RPSBLAST alignment for GI: 254780142 and conserved domain: KOG0260
>gnl|CDD|35481 KOG0260, KOG0260, KOG0260, RNA polymerase II, large subunit [Transcription]. Length = 1605
Score = 55.4 bits (133), Expect = 1e-07
Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 49/205 (23%)
Query: 1161 RNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYILDGNPV---PQDILR 1217
R + +V + P EDG F P ++ DG ++ + D +P D++
Sbjct: 1253 RGIPDIFKVYMSPTEDG-----EFKPVDEWDLETDGVNLRRVLSEPDVDPARTTSNDLVE 1307
Query: 1218 I---KGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILGDN 1274
I G+EA+ L+ E+ V +G +N++H+ ++ M + + I
Sbjct: 1308 IAEVLGIEAVRKALLRELLNVISFDGSYVNYRHLALLCDVMTARGHLMA------ITRHG 1361
Query: 1275 VDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAIAG 1334
++R + L R SF+ET +L +AA
Sbjct: 1362 INRQDTGALMRC--------------------------------SFEETVDILMDAAAHA 1389
Query: 1335 KVDTLDGFKENVIVGRSIPAGTGAI 1359
+ D G EN+++G+ P GTG
Sbjct: 1390 EKDPCRGVSENIMLGQLAPMGTGCF 1414