RPSBLAST alignment for GI: 254780142 and conserved domain: KOG0260

>gnl|CDD|35481 KOG0260, KOG0260, KOG0260, RNA polymerase II, large subunit [Transcription]. Length = 1605
 Score = 55.4 bits (133), Expect = 1e-07
 Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 49/205 (23%)

Query: 1161 RNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYILDGNPV---PQDILR 1217
            R   +  +V + P EDG      F P ++     DG ++ +     D +P      D++ 
Sbjct: 1253 RGIPDIFKVYMSPTEDG-----EFKPVDEWDLETDGVNLRRVLSEPDVDPARTTSNDLVE 1307

Query: 1218 I---KGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILGDN 1274
            I    G+EA+   L+ E+  V   +G  +N++H+ ++   M  +  +        I    
Sbjct: 1308 IAEVLGIEAVRKALLRELLNVISFDGSYVNYRHLALLCDVMTARGHLMA------ITRHG 1361

Query: 1275 VDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAIAG 1334
            ++R +   L R                                 SF+ET  +L +AA   
Sbjct: 1362 INRQDTGALMRC--------------------------------SFEETVDILMDAAAHA 1389

Query: 1335 KVDTLDGFKENVIVGRSIPAGTGAI 1359
            + D   G  EN+++G+  P GTG  
Sbjct: 1390 EKDPCRGVSENIMLGQLAPMGTGCF 1414