HHsearch alignment for GI: 254780143 and conserved domain: PRK09606
>PRK09606 DNA-directed RNA polymerase subunit beta''; Validated.
Probab=100.00 E-value=0 Score=678.91 Aligned_cols=417 Identities=23% Similarity=0.439 Sum_probs=335.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC-CCCCCEEEEEEEEEECCCC----------CCHHHHHHC
Q ss_conf 87088999999999862466522111225899976637807-6798589999978980985----------889999983
Q gi|254780143|r 26 IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPIT-AFSGAAMLEFVSYEFDPPK----------FDVDDCLWR 94 (1386)
Q Consensus 26 ~P~Li~iQ~~Sf~~Flq~~~~~~~r~~~GL~~v~~~~fPI~-d~~~~~~Lef~~y~l~~Pk----------~tp~ECRlR 94 (1386)
T Consensus 15 ~~~Lv~~qidSfn~Fi----------~~gl~~ii~~~~pi~~~~~~~~~l~~~~~~i~~P~~~e~~~~~~~l~P~ecR~r 84 (491)
T PRK09606 15 EEPLVRHHIDSYNDFI----------DNGLQKIIDEQEPIETEIEGGYYVELGKIRVGKPIVKEADGSVREIYPMEARLR 84 (491)
T ss_pred CCCCHHHHHHHHHHHH----------HHHHHHHHHHCCCEEECCCCCEEEEEEEEEECCCCEECCCCCCCCCCHHHHHHC
T ss_conf 8997089999999999----------974799998529758757996899997899848824337787564698999963
Q ss_pred CCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEECCC------------------------CCEEECCEE
Q ss_conf 99753358999999993178766552000122367875100002689------------------------628986821
Q gi|254780143|r 95 DLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKD------------------------GTFVIKGIQ 150 (1386)
Q Consensus 95 ~lTYsapL~V~i~l~v~~~~~~~~~k~~~~ike~~V~lG~IPiMt~~------------------------GyFIING~E 150 (1386)
T Consensus 85 ~lTYs~~l~v~i~~~~~~~~----------~~~~~v~iG~iPIMv~S~~C~L~~~~~~~~~~~gE~~~d~GGYFIInG~E 154 (491)
T PRK09606 85 NLTYSAPLYLEMTLVEGGEE----------EEPEEVYIGELPVMVGSKICNLYGLSEEELIEVGEDPLDPGGYFIVNGSE 154 (491)
T ss_pred CCCCCCEEEEEEEEEECCCC----------CEEEEEEECCCCEECCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCEE
T ss_conf 99643148999999989940----------20578996115457257754589979799986187766798679997878
Q ss_pred EEEEEEECCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCE---EEEEECCCCEEEEEECC-CCCHHHHHHHHHCCCCHH
Q ss_conf 46866512278521202346515778567999981188723---68997589829999718-787039989988099847
Q gi|254780143|r 151 RIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW---MDIEFDSKDIIHVRIDR-RRKVPVTSFLMALGMDSE 226 (1386)
Q Consensus 151 RVIVsQl~RSPGVyf~~~k~k~~~s~k~~ysa~IIP~RGSw---Le~e~d~kd~iyvrIdr-~rKIPi~ilLrALG~ssd 226 (1386)
T Consensus 155 rVIi~Qe~~~~n~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~v~~~~~~~~IPl~illrALG~~sD 231 (491)
T PRK09606 155 RVLMTLEDLAPNKILVEKI---ERYNDRIYVAKVFSQRRGYRALVTVERNRDGLLEVSFPSVPGKIPFVILMRALGLETD 231 (491)
T ss_pred EEEEEEHHCCCCEEEEEEC---CCCCCEEEEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEHHHHHHHHCCCCH
T ss_conf 8998611207983899753---6799547999999358874368999986896799998143757669999998568868
Q ss_pred -HHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHCC
Q ss_conf -9999738740577306731023545666421012232112445845440221020799887876360001026677347
Q gi|254780143|r 227 -EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCG 305 (1386)
Q Consensus 227 -eIl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~ 305 (1386)
T Consensus 232 ~eI~~~i~~d~----------------~~------------------------------~~------------------- 246 (491)
T PRK09606 232 EEIVEAVSDDP----------------EI------------------------------VK------------------- 246 (491)
T ss_pred HHHHHHHCCCH----------------HH------------------------------HH-------------------
T ss_conf 99999864789----------------99------------------------------99-------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 41000013666776999623459989999998656541024420244455200000110234588999999887605776
Q gi|254780143|r 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGD 385 (1386)
Q Consensus 306 ~~~~~~~~d~~~gei~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~d~~~~~~eAl~~I~k~lr~~~ 385 (1386)
T Consensus 247 -------------------------~ll--------------------------~~l~~~~i~t~e~Al~yIg~~~~~~~ 275 (491)
T PRK09606 247 -------------------------FML--------------------------ENLEEAEVDTQEDALEYIGKRVAPGQ 275 (491)
T ss_pred -------------------------HHH--------------------------HHHHHCCCCCHHHHHHHHHHHCCCCC
T ss_conf -------------------------999--------------------------99987589999999999997557998
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCC
Q ss_conf 31045688886202453023334555577765420366776770661899888898887630487643440101533233
Q gi|254780143|r 386 VSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVR 465 (1386)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~y~l~~vgr~~~n~~l~~~~~~~~~~Lt~~d~~~~i~~L~~l~~g~~~~DdiDhlgnkRvr 465 (1386)
T Consensus 276 ~~~~~~~~~~-----~~l~~~~lp-----------Hlg~~~~~~~~K~~~L~~mi~kLl~l~~g~~~~DD~D~l~NkRv~ 339 (491)
T PRK09606 276 TKEYQIKRAE-----YVLDNYLLP-----------HLGVDKEVRIAKAHYLGRMAEACFELALGRREEDDKDHYANKRLK 339 (491)
T ss_pred CHHHHHHHHH-----HHHHHHHCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCEEEE
T ss_conf 8167999999-----999864056-----------679860234678888999999999985699888884132372671
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCC-------CEEECCCCCCHHHHH
Q ss_conf 33578789888888999988765311344--334352112220234655542026675-------035415542102322
Q gi|254780143|r 466 SVGEMLKNQYRLGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQ-------LSQLEEHVNSLSRIT 536 (1386)
Q Consensus 466 ~vgeLl~~~fr~~l~rl~r~i~~~~~~~~--~~~~~~~~~in~~~i~~~i~~ff~t~~-------lsq~ld~~n~ls~lt 536 (1386)
T Consensus 340 ~~G~Ll~~lfr~~~~~~~k~ik~~l~~~~~~~~~~~~~~~~~~~~it~~~~~~~~tGnw~~~~~glsQ~l~r~n~l~~lS 419 (491)
T PRK09606 340 LAGDLMEDLFRVAFNRLARDIKYQLERAAMRNRELSIQTAVRSDVLTERLRHALATGNWVGGRTGVSQLLDRTDYMATLS 419 (491)
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHH
T ss_conf 17789999999999999999999999987508877889962735577889999873775578862678833778878888
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECEEEEEEECCCCCCCCEE
Q ss_conf 001122344444322346655432211110444303566765210210001224424687644106
Q gi|254780143|r 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 (1386)
Q Consensus 537 h~RR~s~lgpggl~r~~~~~evR~ih~s~~GriCPieTPEG~n~GLv~~la~~a~in~~g~ie~py 602 (1386)
T Consensus 420 h~Rrv~~----~~~~~~k~~~~R~lhps~~G~iCPveTPeG~~~GLi~~La~~~~Is~~-~~~~~i 480 (491)
T PRK09606 420 HLRRVVS----PLSRSQPHFEARDLHPTQWGRICPSETPEGPNCGLVKNLAQMVEISTG-EDEEEI 480 (491)
T ss_pred HHHHCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEECC-CCCHHH
T ss_conf 7654067----756567887678478121763055779897003077763352899679-991789