>TIGR02013 rpoB DNA-directed RNA polymerase, beta subunit; InterPro: IPR010243 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry describes orthologues of the beta subunit of bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.

Probab=100.00 E-value=0 Score=3744.77 Aligned_cols=1352 Identities=55% Similarity=0.889 Sum_probs=1264.3 Q ss_pred CEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHCC---------CCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEE-E Q ss_conf 63321013104666788708899999999986246---------6522111225899976637807679858999997-8 Q gi|254780143|r 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMN---------IAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVS-Y 79 (1386) Q Consensus 10 ~~~~R~~f~k~~~~~~~P~Li~iQ~~Sf~~Flq~~---------~~~~~r~~~GL~~v~~~~fPI~d~~~~~~Lef~~-y 79 (1386) T Consensus 1 k~~~R~~f~ki~~~l~~P~Lle~Q~~Sy~~FL~~~~~~~~~A~~~~~~~R~~~GLe~vF~~~FPI~d~~g~~~LEY~sDY 80 (1449) T TIGR02013 1 KKRERIDFAKIPEILELPNLLEVQLDSYDWFLQSDRNKASGADETPPEERKEEGLEEVFKSIFPIEDYNGNITLEYLSDY 80 (1449) T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCC T ss_conf 98720143435543568618899999999875201246421344778874234699997522884024687688870201 Q ss_pred EECCCCCCHH-HHHHCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEECCCCCEEECCEEEEEEEEEC Q ss_conf 9809858899-999839975335899999999317876655200012236787510000268962898682146866512 Q gi|254780143|r 80 EFDPPKFDVD-DCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLH 158 (1386) Q Consensus 80 ~l~~Pk~tp~-ECRlR~lTYsapL~V~i~l~v~~~~~~~~~k~~~~ike~~V~lG~IPiMt~~GyFIING~ERVIVsQl~ 158 (1386) T Consensus 81 ~l~ePky~v~~EC~~RG~TYs~pLkvk~rL~~~e~~~e~g~~~~~eIk~q~VymG~iP~MTd~GTFIINGaERVvVSQlH 160 (1449) T TIGR02013 81 ELGEPKYSVEEECKERGLTYSAPLKVKLRLINKEKDEETGEKNTKEIKEQDVYMGDIPLMTDRGTFIINGAERVVVSQLH 160 (1449) T ss_pred CCCCCCCCHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEECEEEEEEEEEE T ss_conf 16898878789986258950202348898877477787777353563464566437676457854688041888887778 Q ss_pred CCCCEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEEEC-CCCEEEEEECCCC---CHHHHHHHHHCCCCHHHHHHHHCC Q ss_conf 278521202346515778567999981188723689975-8982999971878---703998998809984799997387 Q gi|254780143|r 159 RSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFD-SKDIIHVRIDRRR---KVPVTSFLMALGMDSEEILSTFYP 234 (1386) Q Consensus 159 RSPGVyf~~~k~k~~~s~k~~ysa~IIP~RGSwLe~e~d-~kd~iyvrIdr~r---KIPi~ilLrALG~ssdeIl~~f~~ 234 (1386) T Consensus 161 RSPGV~F~~~~~K~~~~Gk~~fsa~IIP~RGSWLeFe~Dq~kD~~yvrIDrkrrrrK~~aTvlLrAlg~~~~~~i~~~f~ 240 (1449) T TIGR02013 161 RSPGVFFSSEKDKHTKKGKKLFSARIIPYRGSWLEFETDQKKDLLYVRIDRKRRRRKLPATVLLRALGYEKDEDIIEFFD 240 (1449) T ss_pred ECCCEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHC T ss_conf 55857616644565766756788888078687010100452475899976600354660413332508302478874103 Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCC Q ss_conf 40577306731023545666421012232112445845440221020799887876360001026677347410000136 Q gi|254780143|r 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 (1386) Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~d 314 (1386) T Consensus 241 ~v~~~~~~~~~~~~~~~~~~-r-~~~eFdl~d~~~g~~~~~~g~~itar~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1449) T TIGR02013 241 LVEKEKVSKKLLKKYVPERL-R-ERAEFDLKDADGGKILLAKGKKITARIKKKLENKSLKRELLLEELLAEDLVDEDAGE 318 (1449) T ss_pred EEEEEEECCHHHHHHHHHHC-C-CCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 02355403202345533302-4-666776324888879842785004899998731313446666888866653333145 Q ss_pred CCCCEEEE---ECCCCCCHHHHHHHHHCCCCCEEEEEECC---CCCCCCCCHHHHCCCCCCHHH---HHHHHHHHHCCCC Q ss_conf 66776999---62345998999999865654102442024---445520000011023458899---9999887605776 Q gi|254780143|r 315 GETGEIYI---EAGDVIDEKSLEEIFHSEIRDIPILYVDS---VNNNAYIRNTLVTDKNKDRKD---ALLDIYRVMRPGD 385 (1386) Q Consensus 315 ~~~gei~~---~~~~~~~~~~l~~~~~~~~~~~~~l~~~~---~~~~~~i~~~~~~d~~~~~~e---Al~~I~k~lr~~~ 385 (1386) T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~kD~~~~~~enalAL~~iY~~LRPGE 398 (1449) T TIGR02013 319 VVDAEVILVALDEEALESEEILKQILFSGIDTLILERLGSIIKSVENEYIRNTLEKDPTASEEENALALVEIYRKLRPGE 398 (1449) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 11377899998532046799999986111114442026640015642799998622787583676789999998627778 Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC------------------------------------CC Q ss_conf 310456888862024530233345555777654203667767------------------------------------70 Q gi|254780143|r 386 VSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD------------------------------------VR 429 (1386) Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~y~l~~vgr~~~n~~l~~~~~~~------------------------------------~~ 429 (1386) T Consensus 399 PpT~~aA~~~l~~lFFdpkRYDL~~VGRYK~NkKL~~~~~~~~~~L~~~~~~~E~~~~~~E~~~~~~~~~~~~~~~~~~~ 478 (1449) T TIGR02013 399 PPTVEAARSLLESLFFDPKRYDLGRVGRYKLNKKLGLDVPDESAYLEKRLELKELSDILYERLLQLISTLDLEEIDPDIG 478 (1449) T ss_pred CCCHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCE T ss_conf 40268999999862788214277656602231543457731357887403561047899988877650588664577611 Q ss_pred EECHHHHHHHHHHHHHHHCC------------CCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-- Q ss_conf 66189988889888763048------------7643440101533233335787898888889999887653113443-- Q gi|254780143|r 430 HIRKEDIIAIIKILVDLRNG------------KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDI-- 495 (1386) Q Consensus 430 ~Lt~~d~~~~i~~L~~l~~g------------~~~~DdiDhlgnkRvr~vgeLl~~~fr~~l~rl~r~i~~~~~~~~~-- 495 (1386) T Consensus 479 ~Lt~eDii~~iKyLi~l~~g~~~~~~~~G~~~~g~~DDIDHLgNRRvRsVGELl~Nq~r~GL~RMer~vrERM~~~D~~~ 558 (1449) T TIGR02013 479 VLTKEDIIATIKYLIKLRNGEEEVVNVIGLEIKGEIDDIDHLGNRRVRSVGELLQNQFRVGLARMERIVRERMTTQDTAF 558 (1449) T ss_pred EECCHHHHHHHHHHEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC T ss_conf 61313563310322220278702401016642223564105767614117899888788766652101100267332110 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC Q ss_conf 34352112220234655542026675035415542102322001122344444322346655432211110444303566 Q gi|254780143|r 496 DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETS 575 (1386) Q Consensus 496 ~~~~~~~~in~~~i~~~i~~ff~t~~lsq~ld~~n~ls~lth~RR~s~lgpggl~r~~~~~evR~ih~s~~GriCPieTP 575 (1386) T Consensus 559 dt~tP~dLiN~kp~~a~ikeFFG~SQLSQFMDQtNPLaElTHKRRLSALGPGGL~RERAGFEVRDVH~tHYGRiCPIETP 638 (1449) T TIGR02013 559 DTLTPQDLINAKPIVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETP 638 (1449) T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHCHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC T ss_conf 23277431130024323223222786540004777532120011003437778870116505631178888740775788 Q ss_pred CCCCCEEEECEEEEEEECCCCCCCCEEEEEECCCCC--CCEEECCHHHHCCEEEECCCCEECCCCCCCCCCEEECCCC-C Q ss_conf 765210210001224424687644106986225534--8166429677376379616534114684022200000023-3 Q gi|254780143|r 576 EGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT--NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG-E 652 (1386) Q Consensus 576 EG~n~GLv~~la~~a~in~~g~ie~py~~v~~~~~~--~~i~~l~~~~e~~~~Ia~~~~~l~~~~~~~~~~~~~r~~~-~ 652 (1386) T Consensus 639 EGPNIGLI~SLs~yArvN~yGFIETPYr~V~~g~v~~~~~v~YLtA~eEd~~~iAQa~~~lDe~g~i~~d~V~~R~~G~e 718 (1449) T TIGR02013 639 EGPNIGLINSLSTYARVNEYGFIETPYRKVKDGKVVVDDEVDYLTADEEDNYVIAQANAPLDENGRIVEDLVVARYRGDE 718 (1449) T ss_pred CCCCHHHHHHHHHCEEECCCCCCCCCCEEEECCEEEECCCCEECCHHHHCCEEEECCCCCCCCCCCCCCCEEEEEECCCC T ss_conf 88861134323020055577751367678745323333641343512236716703544318897052356888654773 Q ss_pred CCCCCHHHEEECCCCCCCEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHCCCEEECCCC Q ss_conf 33225787220236721102311233320110100221122234443210136654111266201110106530102124 Q gi|254780143|r 653 EILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 (1386) Q Consensus 653 ~~~~~~~~v~~~~i~p~~i~sv~aslIPflehdda~R~l~g~nm~rQav~l~~~~~~~v~tg~E~~~~~~s~~~i~a~~~ 732 (1386) T Consensus 719 ~~~~~~~~VdyMDVSP~Q~VSVaAaLIPFLEHDDANRALMGsNMQRQAVPLL~seaP~VGTGmE~~~A~DSG~~i~A~~~ 798 (1449) T TIGR02013 719 ITLVSPDEVDYMDVSPKQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPLLRSEAPLVGTGMEAKVARDSGAVIVAKRA 798 (1449) T ss_pred CCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCC T ss_conf 22116760247651832355665542633235414566541253123677787798823202789886235408997069 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCC------CCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCCCC Q ss_conf 4343356553025215665564446------6301114655544547322445304479772078520355223578602 Q gi|254780143|r 733 GIVEQVDAIRIVIRSVEGDLDPSTS------GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLA 806 (1386) Q Consensus 733 g~v~~vd~~~i~i~~~~~~~~~~~~------~~~~y~~~~~~~~~~~~~~~q~p~V~~g~~~~~~~~l~~~~~~~~~el~ 806 (1386) T Consensus 799 GvV~~Vda~~I~v~~~~~~~~~~~~g~DPd~~~~~Y~L~Ky~RSNQ~TC~nQ~PiV~~GDrV~~GdvlADGPsT~~GELA 878 (1449) T TIGR02013 799 GVVEYVDAKRIVVRYKEKEEEETVSGDDPDAAIDIYRLLKYQRSNQDTCINQRPIVSVGDRVEAGDVLADGPSTDLGELA 878 (1449) T ss_pred CEEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCEEECCCCCEECCCCEEECCCCCCCCCCC T ss_conf 78999847788993147766655577883220257504676314788401453550148681021277347666443201 Q ss_pred CCCCCEEEEEECCCCCCCCCEECCHHHHHCCCCCEEEEEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC Q ss_conf 22375155531355444442000013442587310346665311211478840024666546867841024137413773 Q gi|254780143|r 807 LGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGA 886 (1386) Q Consensus 807 ~G~N~~VA~m~~~GYN~EDaiiin~~~v~rg~~~s~h~~~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~ld~~Giv~~G~ 886 (1386) T Consensus 879 LGrNvlVAFMPW~GYNyEDAIliSERlVkdDvFTSIHI~E~e~~aRdTKLG~EEiTrDIPNVsE~ALrnLDE~GIvrIGA 958 (1449) T TIGR02013 879 LGRNVLVAFMPWNGYNYEDAILISERLVKDDVFTSIHIEEFEVEARDTKLGPEEITRDIPNVSEEALRNLDENGIVRIGA 958 (1449) T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHEECCCCEEEEEEEEEECCEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEE T ss_conf 16710367522788653356355000101376203789999830103478870123457984088882589577588733 Q ss_pred EECCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 31367611101246777767703466543035555443233202278853220012101456542026678888999999 Q gi|254780143|r 887 EVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 (1386) Q Consensus 887 ~V~~gDilvgk~tp~~~~~~~pe~~~l~~i~~~~~~~~~d~~~~~~~g~~g~v~~~~~~~r~~~~~~~~~~~~~~~~~~~ 966 (1386) T Consensus 959 eV~~GDILVGKvTPKGEs~~TPEEkLLRAIFGEKA~dVrD~SL~vP~G~~G~ViDVkvF~R~g~~K~~~~~~~~~~~~~k 1038 (1449) T TIGR02013 959 EVKAGDILVGKVTPKGESELTPEEKLLRAIFGEKARDVRDTSLRVPPGVEGTVIDVKVFSREGKEKDKRDLKIEEEELDK 1038 (1449) T ss_pred EECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHH T ss_conf 87077477721218898888756775420033411455276630579972079986885401233306899999999988 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CH------HHHHCCCHHHHHE-EEECCHHHHHHHHH Q ss_conf 987288899988788898888862585345665555543211--35------7640148543100-14158678999999 Q gi|254780143|r 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL--SS------DLISEYPRSQWWQ-FAVQDEKVQRNVES 1037 (1386) Q Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1037 (1386) T Consensus 1039 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~~~L~~l~~~~~~~~~~~~~~ 1118 (1449) T TIGR02013 1039 LKKKREDELTILLREELKRLLKLLLLAIVESALSVELRGEGEAEQEAKLEKAEWLELLESISLSDLLKLEAKENENLLEI 1118 (1449) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 76438999999999999888765545321242122235311234145554443466653343566530301566789999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCE Q ss_conf 99989999999999989887631258867747276999999875588552314336678735888630000787935871 Q gi|254780143|r 1038 LKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTP 1117 (1386) Q Consensus 1038 ~~~~~~~~~~~~~~~~~~k~~ki~~~~~~~~gv~~~vKV~ir~~R~p~iGDKfasRHGqKGVis~i~p~eDMPf~~dG~~ 1117 (1386) T Consensus 1119 ~~~~~~~~k~~~~~~~~~k~~~~~~GDeLppGV~~~VkVYiA~KRKiqvGDKMAGRHGNKGvvSkIlP~EDMPfL~DGtP 1198 (1449) T TIGR02013 1119 LREYFLELKKLLDERKEEKKSKLEEGDELPPGVNKLVKVYIAQKRKIQVGDKMAGRHGNKGVVSKILPIEDMPFLEDGTP 1198 (1449) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCE T ss_conf 99999888889887888887652178878765236889988861205888843555578415655245247786954387 Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCH---HHHH Q ss_conf 5698668986750708999999999999871962243334322221024677787763154322100001352---5677 Q gi|254780143|r 1118 VDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD---DSVL 1194 (1386) Q Consensus 1118 pDIIlNPhgvPSRMtIGqllE~~lGka~~~~G~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 1194 (1386) T Consensus 1199 VDivLNPLGVPSRMNiGQilE~hLG~Ag~~~g~~i~~~le~~q~~~~k~~~~~~l~~~~a~~e~~pd~~~~~enCde~~~ 1278 (1449) T TIGR02013 1199 VDIVLNPLGVPSRMNIGQILETHLGWAGKKLGKQIARMLEDKQKDAKKELLVKRLEELNAINEKDPDTIHALENCDEELV 1278 (1449) T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 77897887897657267999999999986206478888898766789999999999716842014135455543025654 Q ss_pred HHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCCCC--CCEEEECCCCCCCCCCCEEEEEEEEEECCCHHHHHCCCCCC Q ss_conf 7665302684002565578899999999998686899--86999868988402685048846454101102110000236 Q gi|254780143|r 1195 RVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES--GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 (1386) Q Consensus 1195 ~~~~~~~~g~~~aTP~F~g~~~~~i~~~L~~aG~~~~--Gke~lydG~TGe~~~~~IfvG~~YyqkL~HMV~DKiHARst 1272 (1386) T Consensus 1279 ~~A~~~~~G~~~atPVFdGa~~~~~~~~l~~ag~p~~~~GK~~LyDGRTGE~F~~pVtVGy~YMLKL~HLVDDK~HARSt 1358 (1449) T TIGR02013 1279 ELAKDLSKGVKIATPVFDGASEEEIKELLEKAGLPRDNSGKVVLYDGRTGEQFDNPVTVGYMYMLKLHHLVDDKIHARST 1358 (1449) T ss_pred CCHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEHHHHCCCHHHCCCCCCC T ss_conf 03011148854525611698879999999846879899831688227888706883166220011102340004243312 Q ss_pred CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 87311030799862331784320789999999869899998611100110159999887638787899786677899999 Q gi|254780143|r 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 (1386) Q Consensus 1273 GP~sllTrQP~eGRsr~GGlRfGEMErwaL~AyGAa~~LqE~Lt~kSDdv~gr~~~~~~iv~g~~~~~~~~pesf~vl~~ 1352 (1386) T Consensus 1359 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAy~LQE~LTVKSDDv~GR~K~YeAIVKGe~~~epGiPESFnVL~k 1438 (1449) T TIGR02013 1359 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKAYEAIVKGENLPEPGIPESFNVLIK 1438 (1449) T ss_pred CCCCCEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHH T ss_conf 88455243687620035884140688999999878999887413230566501565532104688765446841579999 Q ss_pred HHHHCCCCEEE Q ss_conf 99854200276 Q gi|254780143|r 1353 EMQALGLSIDL 1363 (1386) Q Consensus 1353 El~~l~l~~~~ 1363 (1386) T Consensus 1439 ElqsLgLdi~~ 1449 (1449) T TIGR02013 1439 ELQSLGLDIEI 1449 (1449) T ss_pred HHHHHCCCCCC T ss_conf 99760354459

HHsearch alignment for GI: 254780143 and conserved domain: TIGR02013