HHsearch alignment for GI: 254780143 and conserved domain: pfam10385
>pfam10385 RNA_pol_Rpb2_45 RNA polymerase beta subunit external 1 domain. RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between domains 4 and 5 of the yeast protein. It is also known as the external 1 region of the polymerase and is bound in association with the external 2 region.
Probab=98.87 E-value=2.4e-09 Score=84.89 Aligned_cols=66 Identities=58% Similarity=0.922 Sum_probs=64.7
Q ss_pred EEEEECCCCCCCEEECCHHHHCCEEEECCCCEECCCCCCCCCCEEECCCCCCCCCCHHHEEECCCC
Q ss_conf 698622553481664296773763796165341146840222000000233332257872202367
Q gi|254780143|r 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 (1386)
Q Consensus 602 y~~v~~~~~~~~i~~l~~~~e~~~~Ia~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~v~~~~i~ 667 (1386)
T Consensus 1 YrkV~~G~Vt~~i~YLsA~eE~~~~IAqa~~~~d~~g~i~~~~V~~R~~ge~~~~~~~~VdyiDVS 66 (66)
T pfam10385 1 YRKVKNGKVTDEIVYLTADEEEGYVIAQANAPLDEDGKFVDDLVIARYRGEFVLVPPEEVDYMDVS 66 (66)
T ss_pred CEEECCCEECCCEEEECHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCEEEECHHHCEEEECC
T ss_conf 969738998696699677983886799657569899979345175888582016897674179629