gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution Length = 1224
>gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution Length = 1224
>gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex Length = 1224
>gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With The Inhibitor Alpha Amanitin Length = 1224

Score = 243 bits (621), Expect = 1e-61, Method: Composition-based stats. Identities = 131/1004 (13%), Positives = 290/1004 (28%), Gaps = 164/1004 (16%) Query: 29 LIEVQKASYDHFLMMNIAPDERPNEGL--QAAFKSVFPITAFSGAAMLEFVSYEFDPPKF 86 L+ Q S++ F+ + + L + + S + F P Sbjct: 43 LVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMV 102 Query: 87 D----------VDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS------- 129 + + R+LTY+ L + ++ ++ + G + ++ + Sbjct: 103 NESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSES 162 Query: 130 --IYMGDLPLMTKD------------------------GTFVIKGIQRIVVSQLHRSPGI 163 +++G LP+M + G F+I G ++++++Q RS G Sbjct: 163 GKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQE-RSAGN 221 Query: 164 HFDHDKGRASLSGKLLYACRIIP--DQGLWMDIEFDSKDIIHVR---IDRRRK------- 211 + + + + I ++G K ++ R R K Sbjct: 222 I--VQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVK--LYGREGSSARTIKATLPYIK 277 Query: 212 --VPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDID 268 +P+ ALG+ + EIL + Q + + ++ + + + Sbjct: 278 QDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRR 337 Query: 269 TGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVI 328 I+ K++ L+++ + + + + + A D Sbjct: 338 GTALGIKKEKRIQYAK-DILQKEFLPHITQLEGFESRKAFF---LGYMINRLLLCALDRK 393 Query: 329 DEKSLEEIFHSEIRDI-PILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVS 387 D+ + + P+L + + + ++A ++ Sbjct: 394 DQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTI 453 Query: 388 TFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV--RHIRKEDIIAIIKILVD 445 T + ++ + + K S G ++ R + R + Sbjct: 454 TSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQ 513 Query: 446 LRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLIN 505 L N + + ++KN + + + I+ + + P + Sbjct: 514 LHNTHWGLVCPAETPEGQACG---LVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYV 570 Query: 506 AKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTH 565 A F + + RR + + + Sbjct: 571 PHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDA 630 Query: 566 YGRICPAETSEG------HNIGLVSSLTSFARVNAYGFIETPYRKVCDGK-----VTNDV 614 P E + + + Y IE + V + V Sbjct: 631 GRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLV 690 Query: 615 VYLSAMEEENRYIAQANSSL-DEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVS 673 Y+ A EEE+ IA L + + +L + + P ++ Sbjct: 691 EYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILG 750 Query: 674 IAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAG 733 +AAS+IPF +++ S R M +QA+ + Sbjct: 751 VAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNV----------------------- 787 Query: 734 IVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDI 793 + + + Y + + R Sbjct: 788 ------------------RMDTMANILYYPQKPLGTTRAMEYLKFR-------------- 815 Query: 794 IADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARD 853 +L G+N +VA + GYN EDSM++++ + +F S+ + + Sbjct: 816 ----------ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKK 865 Query: 854 TKLGPEEITR-----DIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTP 908 + E + + +D+ G+I G V+ D+++GK TP +P Sbjct: 866 YGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPI-----SP 920 Query: 909 EEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDK 952 +E+ L + RD S + S +G V V + K Sbjct: 921 DEEELGQRTAYHSK--RDASTPLRSTENGIVDQVLVTTNQDGLK 962

PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1i3q