PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1iw7
gi|21730339|pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119
>gi|21730345|pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119
Score = 442 bits (1138), Expect = e-121, Method: Composition-based stats.
Identities = 291/590 (49%), Positives = 399/590 (67%), Gaps = 16/590 (2%)
Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD- 426
++AL+ ++ ++RPGD A + L D +YDL GR K +L +
Sbjct: 229 MRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGR 288
Query: 427 -----DVRHIRKEDIIAIIKILVDLRNGKG--TIDDIDNLGNRRVRSVGEMLKNQYRLGL 479
+ + E + ++ L L G +DDID+LGNRR+R+VGE++ +Q+R+GL
Sbjct: 289 TLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGL 348
Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539
R+ R ++ER+ DS+ P L+N++P+ +A+ EFF SQLSQ ++ N LS + H R
Sbjct: 349 ARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRHKR 408
Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599
R+SALG GG+ R RAG ++RDVH THYGRICP ET EG NIGL++SL ++ARV+ GFI
Sbjct: 409 RISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIR 468
Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659
TPYR+V G VT++VVY++A EE+ IAQAN+ L E E V R GE ++V E
Sbjct: 469 TPYRRVVGGVVTDEVVYMTATEEDRYTIAQANTPL-EGNRIAAERVVARRKGEPVIVSPE 527
Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719
+++F+D SPKQV S+ +LIPFLE+DD+NR LMG NMQ QAVPL++A+AP V TG+E V
Sbjct: 528 EVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERV 587
Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779
+ S AA+ A+ G V +VD RIV+R +G L Y L +F RSNQ T ++QR
Sbjct: 588 VRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVE-------YPLRRFYRSNQGTALDQR 640
Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839
P V VG VR+ D++ADGP+++ G LALG+N+LVA MP+ GYNFED+++ISE ++ D +
Sbjct: 641 PRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFY 700
Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899
TSIHIE +E+ ARDTKLGPE ITRDIP++SE L+++DE G++ +GAEV PGDILVG+ +
Sbjct: 701 TSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTS 760
Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949
KGES TPEE+LLR+IFGEKA DV+DTSLRVP G G VV R
Sbjct: 761 FKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGD 810