PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1iw7

gi|21730339|pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119
>gi|21730345|pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119
 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 291/590 (49%), Positives = 399/590 (67%), Gaps = 16/590 (2%)

Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD- 426
              ++AL+ ++ ++RPGD      A +    L  D  +YDL   GR K   +L +     
Sbjct: 229 MRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGR 288

Query: 427 -----DVRHIRKEDIIAIIKILVDLRNGKG--TIDDIDNLGNRRVRSVGEMLKNQYRLGL 479
                +    + E  +  ++ L  L  G     +DDID+LGNRR+R+VGE++ +Q+R+GL
Sbjct: 289 TLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGL 348

Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539
            R+ R ++ER+     DS+ P  L+N++P+ +A+ EFF  SQLSQ ++  N LS + H R
Sbjct: 349 ARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRHKR 408

Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599
           R+SALG GG+ R RAG ++RDVH THYGRICP ET EG NIGL++SL ++ARV+  GFI 
Sbjct: 409 RISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIR 468

Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659
           TPYR+V  G VT++VVY++A EE+   IAQAN+ L E      E V  R  GE ++V  E
Sbjct: 469 TPYRRVVGGVVTDEVVYMTATEEDRYTIAQANTPL-EGNRIAAERVVARRKGEPVIVSPE 527

Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719
           +++F+D SPKQV S+  +LIPFLE+DD+NR LMG NMQ QAVPL++A+AP V TG+E  V
Sbjct: 528 EVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERV 587

Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779
            + S AA+ A+  G V +VD  RIV+R  +G L         Y L +F RSNQ T ++QR
Sbjct: 588 VRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVE-------YPLRRFYRSNQGTALDQR 640

Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839
           P V VG  VR+ D++ADGP+++ G LALG+N+LVA MP+ GYNFED+++ISE ++  D +
Sbjct: 641 PRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFY 700

Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899
           TSIHIE +E+ ARDTKLGPE ITRDIP++SE  L+++DE G++ +GAEV PGDILVG+ +
Sbjct: 701 TSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTS 760

Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949
            KGES  TPEE+LLR+IFGEKA DV+DTSLRVP G  G VV      R  
Sbjct: 761 FKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGD 810