PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1iw7

gi|21730339|pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119
>gi|21730345|pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119
 Score =  262 bits (669), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 106/457 (23%), Positives = 186/457 (40%), Gaps = 38/457 (8%)

Query: 15  KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS---GA 71
           K FG+  E+I +P L E+Q  SY   L  ++ P++R N G+QAAF+  FPI       G 
Sbjct: 4   KRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGG 63

Query: 72  AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131
            +L+F+ Y    P F  D+C  +DLTY  PL   L+LI  D            IKE  ++
Sbjct: 64  LVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKD---------TGLIKEDEVF 114

Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD--QG 189
           +G +PLMT+DG+F+I G  R++VSQ+HRSPG++F  D  R        Y   IIP   +G
Sbjct: 115 LGHIPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGR-----YIASIIPLPKRG 169

Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTF--YPKIVYSQRGDFWCF 247
            W+D+E +   ++ ++++ +RK P+   L  LG D E +      Y ++V     +    
Sbjct: 170 PWIDLEVEPNGVVSMKVN-KRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFA 228

Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGV-KFLGITSDCLCGL 306
                 L+    +          + V      +       L E G  K        L G 
Sbjct: 229 MRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGR 288

Query: 307 YVAEDIVNGETGEIYIEAGDVI----------DEKSLEEIFHSEIRDIPILYVDSVNNNA 356
            +A         E+++     +          +   ++ + +  IR +  L  D      
Sbjct: 289 TLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGL 348

Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416
                 V ++     +  L   +++        +     F+       K + + +  ++ 
Sbjct: 349 ARLARGVRERMLMGSEDSLTPAKLVNS--RPLEAAIREFFSRSQLSQFKDETNPLSSLRH 406

Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTI 453
             R++   P     + +E     ++ +     G+   
Sbjct: 407 KRRISALGPGG---LTRERAGFDVRDVHRTHYGRICP 440