PSIBLAST alignment of GI: 254780143 and protein with PDB id: 2pmz

gi|167744883|pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 1124
>gi|167744894|pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 1124
>gi|239782145|pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 1124
>gi|239782158|pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 1124

 Score =  327 bits (837), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 114/587 (19%), Positives = 193/587 (32%), Gaps = 99/587 (16%)

Query: 800  TDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPE 859
             +  D     N  VA  P         + I    +     + I   E     R+T     
Sbjct: 613  IEYLDAEEEENAYVALEPNDLTPDHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSAM 672

Query: 860  EITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGE 919
                     +   L+         +        +    +   G +        + A+   
Sbjct: 673  AKQALGLYAANYQLR---TDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNNAILAVMSF 729

Query: 920  KAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILD 979
               ++ D+ +   S V   +     F         R  S E  +      DK        
Sbjct: 730  TGYNMEDSIIMNRSSVERGMYRSTFF---------RLYSTEEVKYPGGQEDKIVMPEAGV 780

Query: 980  RNIYSR-LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESL 1038
            R    +    +L     VS     K   VL   +       ++ + + +  K   ++  +
Sbjct: 781  RGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSI--V 838

Query: 1039 KVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKG 1098
                E     L    +                 ++VKV V   R    GDK A RHG KG
Sbjct: 839  TRHGEMGIVDLVLITE------------TAEGNKLVKVRVRDLRIPTIGDKFASRHGQKG 886

Query: 1099 IVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLIND 1158
            ++  ++P  DMP+   G   DI+LNP  +PSRM +GQI E   G                
Sbjct: 887  VIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAA------------ 934

Query: 1159 YKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEA 1218
                                                         +  +TP F     E 
Sbjct: 935  -----------------------------------------LSGNIVDATP-FYKTPIEQ 952

Query: 1219 INSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLV 1278
            + + +           ++YDG TG+     +  G +Y  KL+HMV+DK++AR+ G   ++
Sbjct: 953  LQNEILRYGYLPDATEVVYDGRTGQKIKSRIYFGVVYYQKLHHMVADKLHARARGPVQIL 1012

Query: 1279 TQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD-------DVVG------- 1324
            T+QP  G++  GG R GEME  C+  +G A +L++ L   SD       D  G       
Sbjct: 1013 TRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTMIYVCDQCGYIGWYDK 1072

Query: 1325 -RTRVYESIVAGN--DTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368
             + + Y   + G+  + F      +F +L++E+ ++ +S  L     
Sbjct: 1073 NKNK-YVCPIHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLVLEDK 1118