gi|167744883|pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 1124
>gi|167744894|pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 1124
>gi|239782145|pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 1124
>gi|239782158|pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 1124

Score = 219 bits (557), Expect = 4e-54, Method: Composition-based stats. Identities = 176/1161 (15%), Positives = 347/1161 (29%), Gaps = 234/1161 (20%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA + + RV + + K+ L+ SY+ F+ LQ Sbjct: 1 MASNLTIDERWRVIEAYFKSKG------LVRQHLDSYNDFVRNK----------LQEIID 44 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPK----------FDVDDCLWRDLTYAVPLKITLRLIV 110 I + P+ + R+LTYA PL +T+ + Sbjct: 45 EQGEIPTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVE 104 Query: 111 FDVDEFTGAKSIKDIKEQSIYMGDLPLMTKD------------------------GTFVI 146 +++ + +Y+GDLP+M K G F++ Sbjct: 105 NNIEAEP----------EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIV 154 Query: 147 KGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIP----DQGLWMDIEFDSKDII 202 G +R++V+Q +P D G+ + + + +II + + + IE Sbjct: 155 NGSERVIVTQEDLAPNRVLV-DTGKTGSN--ITHTAKIISSTAGYR-VPVTIERLKDGTF 210 Query: 203 HVRIDRRR-KVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVS 261 HV K+P + ALG+ ++ IVY+ D L + ++ Sbjct: 211 HVSFPAVPGKIPFVILMRALGILTD-------RDIVYAVSLDPEVQNELFPSLEQASSIA 263 Query: 262 SSLVDIDTGEQVIESGKKLTSGLLK---SLKEKGVKFLGITSDCLCGLYVAEDIVNGETG 318 + +D + G+K + + K + + + LG +++ + Sbjct: 264 NVDDALDFIGSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKVI 323 Query: 319 EIYIEAGDVIDEKS-----LEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDA 373 E+Y+ + D+ L + + V + Y K A Sbjct: 324 ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKA 383 Query: 374 LLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRK 433 L+ RP D+ T + ++ + + R L+ + + + Sbjct: 384 LV------RP-DIVTERIRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRV-ISSLAR 435 Query: 434 EDIIAIIKILVDLRNGK-GTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 + L + G+ + + + V+++ M + + +E+++ E Sbjct: 436 GQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVV 495 Query: 493 VDIDSV-MPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 + + + + + + +L + L+ RR V Sbjct: 496 PVEEVIRRVTEGGEDQNEYLKWSKVILNGRLIGYYQDGGELANKIRERRRKGEISDEVNV 555 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT 611 + C + I + + + +E+ D Sbjct: 556 GHIVTD----FINEVHVNCDSGRVRRPLIIVSNG-NPLVTIEDIEKLESGAITFDDLVRQ 610 Query: 612 NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQV 671 + YL A EEEN Y+A + L D ++ + Sbjct: 611 GKIEYLDAEEEENAYVALEPNDLTPDH-----------------------THLEIWSPAI 647 Query: 672 VSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR 731 + I AS+IP+ E++ S R M +QA+ L A Sbjct: 648 LGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQL--------------------- 686 Query: 732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRN 791 + + + Y QRPLV + R Sbjct: 687 --------------------RTDTRAHLLHYP--------------QRPLV----QTRAL 708 Query: 792 DIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMA 851 DII G N ++A M + GYN EDS++++ V ++ S + Sbjct: 709 DIIGYTN------RPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEE 762 Query: 852 RDTKLGPEEITRDIP-----NVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPM 906 G E+ +E + +++ G++ EV GD+L+GK++P Sbjct: 763 VKYPGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQE 822 Query: 907 TPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 E +A RDTS+ G G V + + E + Sbjct: 823 FKELSPEQAK--------RDTSIVTRHGEMGIV--------------DLVLITETAEGNK 860 Query: 967 LARDKDDEQVI--LDRNIYSRLM-EILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 L + + + I + SR + + G + V+ +++ + Sbjct: 861 LVKVRVRDLRIPTIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMT 920 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 E + +L + + + +I +P Sbjct: 921 LGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILRYGYLPDATE------------ 968 Query: 1084 IQSGDKMAGRHGNKGIVSRIL 1104 D GR G K I SRI Sbjct: 969 -VVYD---GRTGQK-IKSRIY 984

PSIBLAST alignment of GI: 254780143 and protein with PDB id: 2pmz