PSIBLAST alignment of GI: 254780143 and protein with PDB id: 3h0g
gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1210
>gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1210
Score = 363 bits (931), Expect = 2e-97, Method: Composition-based stats.
Identities = 193/1210 (15%), Positives = 362/1210 (29%), Gaps = 204/1210 (16%)
Query: 211 KVPVTSFLMALGMDSEEILSTFYPKIVYSQR------GDFWCFPLSAADLMVGAKVSSSL 264
K+P L + IL+ +Y G ++ S ++ + ++++
Sbjct: 154 KIP--IMLR----STFCILNGVSDSELYDLNECPYDQGGYFIINGSEKVIIAQERSAANI 207
Query: 265 VDIDTGEQ--------VIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGE 316
V + I S + S L+ S++ K + S + +
Sbjct: 208 VQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQTIRATLPYIRSDIP 267
Query: 317 TGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLD 376
++ G V D LE I + + + A++ +D+ AL
Sbjct: 268 IVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFV--------IQDKDIALDY 319
Query: 377 IYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDI 436
I + S +Y + + + T + + +
Sbjct: 320 IGKR------------GSTTGVTREKRLRYAHDILQKELLPHIT---TMEGFETRKAFFL 364
Query: 437 IAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK--ERISSVD 494
+I ++ + DD D+ G +R+ G +L + +R+ +M R + +
Sbjct: 365 GYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVET 424
Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQ-------------LSQLEEHVNSLSRITHTRRL 541
+ + + + + + +SQ+ S ++H RR
Sbjct: 425 NREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRT 484
Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601
+ + R + R +H TH+G +CPAET EG GLV +L+ + V+ G P
Sbjct: 485 NT----PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVS-VGSPSAP 539
Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF----TEELVFCRCAGEEILVP 657
+ + + + N N TE L R +
Sbjct: 540 IIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEV 599
Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRV--LMGCNMQRQAVPLLKAEAPFVGTGM 715
D + + P D++ ++++ + L +
Sbjct: 600 SIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDP 659
Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC 775
E A + + ++ + ++I DL+ S Y + + Q
Sbjct: 660 EQRFGW--TALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVK 717
Query: 776 VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835
P V P+ LG LA + +P+ +N M
Sbjct: 718 PAPNPHVH------AWTHCEIHPAMILGILA-------SIIPFPDHNQSPRNTYQSAMGK 764
Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895
+ + +++ ++V + +
Sbjct: 765 QAMG--VYLTNYQVRM---------------------------DTMANILYYPQKPLATT 795
Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNER 955
+ + + + AI + D+ + + + + IF R D+ ++
Sbjct: 796 RSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLF-RSIFYRTYTDQEKK 854
Query: 956 SISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISE 1015
E+ E R + I G K+ + D
Sbjct: 855 IGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEEL 914
Query: 1016 YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075
R+Q ++ + Q L+ VK
Sbjct: 915 GQRTQLHAKRDVSTPLRSTESGIVDQ--------------------VMVTTNQEGLKFVK 954
Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135
V + R Q GDK A RHG KG + EDMPF G DI++NP +PSRM V
Sbjct: 955 VRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAH 1014
Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195
+ E L G + + +S L S
Sbjct: 1015 LVECQLSKVSALSGFEGDATPFTDVTVEAVSKLLR---------------SHGFQSRGFE 1059
Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255
V +G + VF G Y
Sbjct: 1060 VMYHGHTGRKLVAQVFLG---------------------------------------PTY 1080
Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315
+L H+V DK++AR+ G ++T+QP+ G+S GG R GEME C ++G + VL+E L
Sbjct: 1081 YQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERL 1140
Query: 1316 TIKSD-------DVVGRTRV-------YE--SIVAGNDTFETGTPESFNVLVKEMQALGL 1359
SD D+ G + YE S + P + +L +E+ ++ +
Sbjct: 1141 FDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200
Query: 1360 SIDLENSRTK 1369
+ L K
Sbjct: 1201 APRLFTKNHK 1210