PSIBLAST alignment of GI: 254780143 and protein with PDB id: 3h0g

gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1210
>gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1210
 Score =  363 bits (931), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 193/1210 (15%), Positives = 362/1210 (29%), Gaps = 204/1210 (16%)

Query: 211  KVPVTSFLMALGMDSEEILSTFYPKIVYSQR------GDFWCFPLSAADLMVGAKVSSSL 264
            K+P    L      +  IL+      +Y         G ++    S   ++   + ++++
Sbjct: 154  KIP--IMLR----STFCILNGVSDSELYDLNECPYDQGGYFIINGSEKVIIAQERSAANI 207

Query: 265  VDIDTGEQ--------VIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGE 316
            V +              I S  +  S L+ S++ K +      S       +     +  
Sbjct: 208  VQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQTIRATLPYIRSDIP 267

Query: 317  TGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLD 376
               ++   G V D   LE I +       +  +      A++         +D+  AL  
Sbjct: 268  IVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFV--------IQDKDIALDY 319

Query: 377  IYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDI 436
            I +              S          +Y    + +  +       T +     +   +
Sbjct: 320  IGKR------------GSTTGVTREKRLRYAHDILQKELLPHIT---TMEGFETRKAFFL 364

Query: 437  IAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK--ERISSVD 494
              +I  ++     +   DD D+ G +R+   G +L + +R+   +M R +    +     
Sbjct: 365  GYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVET 424

Query: 495  IDSVMPQDLINAKPVVSAVCEFFCSSQ-------------LSQLEEHVNSLSRITHTRRL 541
                     + +  + + +     +               +SQ+       S ++H RR 
Sbjct: 425  NREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRT 484

Query: 542  SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601
            +      + R     + R +H TH+G +CPAET EG   GLV +L+  + V+  G    P
Sbjct: 485  NT----PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVS-VGSPSAP 539

Query: 602  YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF----TEELVFCRCAGEEILVP 657
              +  +      +   +     N      N             TE L   R   +     
Sbjct: 540  IIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEV 599

Query: 658  REKIDFIDASPKQVVSIAASLIPFLENDDSNRV--LMGCNMQRQAVPLLKAEAPFVGTGM 715
                D  +   +          P    D++          ++++ +  L  +        
Sbjct: 600  SIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDP 659

Query: 716  ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC 775
            E        A + +     ++  +   ++I     DL+ S      Y + +     Q   
Sbjct: 660  EQRFGW--TALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVK 717

Query: 776  VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835
                P V               P+  LG LA       + +P+  +N          M  
Sbjct: 718  PAPNPHVH------AWTHCEIHPAMILGILA-------SIIPFPDHNQSPRNTYQSAMGK 764

Query: 836  EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895
            + +   +++  ++V                               +  +           
Sbjct: 765  QAMG--VYLTNYQVRM---------------------------DTMANILYYPQKPLATT 795

Query: 896  GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNER 955
              +       +   +  + AI      +  D+ +   + +   +    IF R   D+ ++
Sbjct: 796  RSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLF-RSIFYRTYTDQEKK 854

Query: 956  SISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISE 1015
                  E+ E   R           +       I  G           K+  +  D    
Sbjct: 855  IGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEEL 914

Query: 1016 YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075
              R+Q          ++     +  Q                             L+ VK
Sbjct: 915  GQRTQLHAKRDVSTPLRSTESGIVDQ--------------------VMVTTNQEGLKFVK 954

Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135
            V +   R  Q GDK A RHG KG +      EDMPF   G   DI++NP  +PSRM V  
Sbjct: 955  VRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAH 1014

Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195
            + E  L       G +  +          +S L                 S         
Sbjct: 1015 LVECQLSKVSALSGFEGDATPFTDVTVEAVSKLLR---------------SHGFQSRGFE 1059

Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255
            V     +G  +   VF G                                         Y
Sbjct: 1060 VMYHGHTGRKLVAQVFLG---------------------------------------PTY 1080

Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315
              +L H+V DK++AR+ G   ++T+QP+ G+S  GG R GEME  C  ++G + VL+E L
Sbjct: 1081 YQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERL 1140

Query: 1316 TIKSD-------DVVGRTRV-------YE--SIVAGNDTFETGTPESFNVLVKEMQALGL 1359
               SD       D+ G   +       YE  S        +   P +  +L +E+ ++ +
Sbjct: 1141 FDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200

Query: 1360 SIDLENSRTK 1369
            +  L     K
Sbjct: 1201 APRLFTKNHK 1210