PSIBLAST alignment of GI: 254780143 and protein with PDB id: 3h0g
gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1210
>gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1210
Score = 246 bits (627), Expect = 3e-62, Method: Composition-based stats.
Identities = 141/1020 (13%), Positives = 289/1020 (28%), Gaps = 194/1020 (19%)
Query: 29 LIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPIT------------AFSGAAMLEF 76
L Q S+D F+ + Q +T + + F
Sbjct: 30 LARQQLFSFDEFVQNTM----------QEIVDDDSTLTLDQYAQHTGAQGDVTRRYEINF 79
Query: 77 VSYEFDPPKFD----------VDDCLWRDLTYAVPLKITLRLIVFD-------VDEFTGA 119
P + R+LTY+ PL + +R V + E
Sbjct: 80 GQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWL 139
Query: 120 KSIKDIKEQSIYMGDLPLMTKD------------------------GTFVIKGIQRIVVS 155
+D + +++G +P+M + G F+I G ++++++
Sbjct: 140 VEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKVIIA 199
Query: 156 QLHRSPGIHFDHDKGRASLSGKLLYACRIIP--DQGLWMDIEFDSKDII----------- 202
Q RS + + + Y I ++G + K +
Sbjct: 200 QE-RSAANI--VQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQTIR 256
Query: 203 ----HVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVG 257
++R D +P+ ALG+ + +IL Q + + A ++
Sbjct: 257 ATLPYIRSD----IPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQD 312
Query: 258 AKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGET 317
++ + + K+L L+++ + + +
Sbjct: 313 KDIALDYIGKRGSTTGVTREKRLRYAH-DILQKELLPHITTMEGFETRKAFFLGYMIH-- 369
Query: 318 GEIYIEAGDVIDEKSLEEIFHSEIRDI-PILYVDSVNNNAYIRNTLVTDKNKDRKDALLD 376
+ + A + + + + P+L + + K +
Sbjct: 370 -RMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNREF 428
Query: 377 IYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV--RHIRKE 434
+ ++ T + S+ + D + ++ VG ++ R + R
Sbjct: 429 NLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPI 488
Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494
+ L N + + ++KN + + + I ++
Sbjct: 489 GRDGKLAKPRQLHNTHWGMVCPAETPEGQACG---LVKNLSLMSYVSVGSPSAPIIEFLE 545
Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG-QGGVARAR 553
+ + N +A F L + + + RR + + + R
Sbjct: 546 EWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDI 605
Query: 554 AGVEMRDVHPTHYGRIC---------PAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604
E+R T GRIC P G + I+ R
Sbjct: 606 REKELR--LFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRF 663
Query: 605 -VCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF------TEELVFCRCAGEEILVP 657
+ + YL A EEE IA + L+ EEL +
Sbjct: 664 GWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPH 723
Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717
+ P ++ I AS+IPF +++ S R M +QA+ +
Sbjct: 724 VHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQV------- 776
Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777
+ + + Y + +
Sbjct: 777 ----------------------------------RMDTMANILYYPQKPLATTRSMEYLK 802
Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837
R +L G+N +VA + + GYN EDS+++++ +
Sbjct: 803 FR------------------------ELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRG 838
Query: 838 VFTSIHIEEFEVMARDTKLG-PEEITRD----IPNVSEEGLKNIDECGIICVGAEVNPGD 892
+F SI + + + EE R + +++ G+I G V+ D
Sbjct: 839 LFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGED 898
Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDK 952
I++GK P ++ + RD S + S SG V V + K
Sbjct: 899 IIIGKTAPIPLDHEELGQRT-------QLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLK 951