PSIBLAST alignment of GI: 254780143 and protein with PDB id: 3h0g

gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1210
>gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1210
 Score =  246 bits (627), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 141/1020 (13%), Positives = 289/1020 (28%), Gaps = 194/1020 (19%)

Query: 29  LIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPIT------------AFSGAAMLEF 76
           L   Q  S+D F+   +          Q        +T              +    + F
Sbjct: 30  LARQQLFSFDEFVQNTM----------QEIVDDDSTLTLDQYAQHTGAQGDVTRRYEINF 79

Query: 77  VSYEFDPPKFD----------VDDCLWRDLTYAVPLKITLRLIVFD-------VDEFTGA 119
                  P               +   R+LTY+ PL + +R  V         + E    
Sbjct: 80  GQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWL 139

Query: 120 KSIKDIKEQSIYMGDLPLMTKD------------------------GTFVIKGIQRIVVS 155
              +D +   +++G +P+M +                         G F+I G ++++++
Sbjct: 140 VEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKVIIA 199

Query: 156 QLHRSPGIHFDHDKGRASLSGKLLYACRIIP--DQGLWMDIEFDSKDII----------- 202
           Q  RS          + +    + Y   I    ++G  +      K +            
Sbjct: 200 QE-RSAANI--VQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQTIR 256

Query: 203 ----HVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVG 257
               ++R D    +P+     ALG+  + +IL          Q  +     +  A ++  
Sbjct: 257 ATLPYIRSD----IPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQD 312

Query: 258 AKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGET 317
             ++   +        +   K+L       L+++ +  +                +    
Sbjct: 313 KDIALDYIGKRGSTTGVTREKRLRYAH-DILQKELLPHITTMEGFETRKAFFLGYMIH-- 369

Query: 318 GEIYIEAGDVIDEKSLEEIFHSEIRDI-PILYVDSVNNNAYIRNTLVTDKNKDRKDALLD 376
             + + A +  +    +      +    P+L          +   +     K  +     
Sbjct: 370 -RMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNREF 428

Query: 377 IYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV--RHIRKE 434
              +    ++ T  +  S+    + D  +  ++ VG  ++  R    +      R     
Sbjct: 429 NLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPI 488

Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494
                +     L N    +         +      ++KN   +  + +       I  ++
Sbjct: 489 GRDGKLAKPRQLHNTHWGMVCPAETPEGQACG---LVKNLSLMSYVSVGSPSAPIIEFLE 545

Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG-QGGVARAR 553
              +   +  N     +A   F     L    +  +    +   RR   +  +  + R  
Sbjct: 546 EWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDI 605

Query: 554 AGVEMRDVHPTHYGRIC---------PAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604
              E+R    T  GRIC         P     G        +           I+   R 
Sbjct: 606 REKELR--LFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRF 663

Query: 605 -VCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF------TEELVFCRCAGEEILVP 657
                  +  + YL A EEE   IA +   L+            EEL   +         
Sbjct: 664 GWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPH 723

Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717
                  +  P  ++ I AS+IPF +++ S R      M +QA+ +              
Sbjct: 724 VHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQV------- 776

Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777
                                                + + +  Y       +     + 
Sbjct: 777 ----------------------------------RMDTMANILYYPQKPLATTRSMEYLK 802

Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837
            R                        +L  G+N +VA + + GYN EDS+++++  +   
Sbjct: 803 FR------------------------ELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRG 838

Query: 838 VFTSIHIEEFEVMARDTKLG-PEEITRD----IPNVSEEGLKNIDECGIICVGAEVNPGD 892
           +F SI    +    +   +   EE  R        +       +++ G+I  G  V+  D
Sbjct: 839 LFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGED 898

Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDK 952
           I++GK  P         ++        +    RD S  + S  SG V  V +       K
Sbjct: 899 IIIGKTAPIPLDHEELGQRT-------QLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLK 951