PSIBLAST alignment of GI: 254780143 and protein with PDB id: 3lu0
>gi|307776497|pdb|3LU0|C Chain C, Molecular Model Of Escherichia Coli Core Rna Polymerase Length = 1342
Score = 1668 bits (4320), Expect = 0.0, Method: Composition-based stats.
Identities = 716/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%)
Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62
+ R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV
Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56
Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122
FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++
Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114
Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182
KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY
Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174
Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242
RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R
Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234
Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302
+ L L G S + G+ +E G+++T+ ++ L++ VK + + +
Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291
Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362
+ G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL
Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351
Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422
D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L
Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411
Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482
+ + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+
Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471
Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542
ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ N LS ITH RR+S
Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMVQNNPLSEITHKRRIS 531
Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602
ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY
Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591
Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662
RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D
Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651
Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722
++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA
Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711
Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782
SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V
Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771
Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842
+G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I
Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831
Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902
HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG
Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891
Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962
E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E
Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951
Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022
Q++ +D +E IL+ ++SR+ +L ++ + + PR +W
Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998
Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082
+ + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR
Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058
Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142
IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG
Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118
Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202
A G+G KI +++ + + + +S + D+ V+R+AE +
Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178
Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262
G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+
Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238
Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322
V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV
Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298
Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366
GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+
Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342