PSIBLAST alignment of GI: 254780143 and protein with PDB id: 3lu0

>gi|307776497|pdb|3LU0|C Chain C, Molecular Model Of Escherichia Coli Core Rna Polymerase Length = 1342
 Score = 1668 bits (4320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 716/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%)

Query: 3    KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62
                +    R+RK FGK P+++D+P L+ +Q  S+  F+  +         GL+AAF+SV
Sbjct: 1    MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56

Query: 63   FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122
            FPI ++SG + L++VSY    P FDV +C  R +TY+ PL++ LRL++++ +   G  ++
Sbjct: 57   FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114

Query: 123  KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182
            KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+   SGK+LY  
Sbjct: 115  KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174

Query: 183  RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242
            RIIP +G W+D EFD KD + VRIDRRRK+P T  L AL   +E+IL  F+ K+++  R 
Sbjct: 175  RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234

Query: 243  DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302
            +     L    L  G   S  +     G+  +E G+++T+  ++ L++  VK + +  + 
Sbjct: 235  NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291

Query: 303  LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362
            + G  VA+D ++  TGE+   A   +    L ++  S  + I  L+ + +++  YI  TL
Sbjct: 292  IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351

Query: 363  VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422
              D   DR  AL++IYR+MRPG+  T   AES+F  LFF  D+YDLS VGR+K N  L  
Sbjct: 352  RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411

Query: 423  DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482
            +  +    + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+
Sbjct: 412  EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471

Query: 483  ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542
            ER++KER+S  D+D++MPQD+INAKP+ +AV EFF SSQLSQ     N LS ITH RR+S
Sbjct: 472  ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMVQNNPLSEITHKRRIS 531

Query: 543  ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602
            ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY
Sbjct: 532  ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591

Query: 603  RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662
            RKV DG VT+++ YLSA+EE N  IAQANS+LDE+G F E+LV CR  GE  L  R+++D
Sbjct: 592  RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651

Query: 663  FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722
            ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME  VA  
Sbjct: 652  YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711

Query: 723  SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782
            SG   VAKR G+V+ VDA RIVI+  E ++ P  +G+DIY L K+ RSNQNTC+NQ P V
Sbjct: 712  SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771

Query: 783  KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842
             +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I
Sbjct: 772  SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831

Query: 843  HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902
            HI+E   ++RDTKLGPEEIT DIPNV E  L  +DE GI+ +GAEV  GDILVGK+TPKG
Sbjct: 832  HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891

Query: 903  ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962
            E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E  
Sbjct: 892  ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951

Query: 963  QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022
            Q++   +D  +E  IL+  ++SR+  +L                   ++ + + PR +W 
Sbjct: 952  QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998

Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082
            +  + DE+ Q  +E L  QY+  K   E + + K  KI  GDD+ PGVL++VKV++A+KR
Sbjct: 999  ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058

Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142
             IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG
Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118

Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202
             A  G+G KI +++   +    +         +         +S + D+ V+R+AE  + 
Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178

Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262
            G+P++TPVFDGA E  I  +L++ DL  SGQ  LYDG TGE F+RPVTVGY+YMLKLNH+
Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238

Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322
            V DK++ARSTGSYSLVTQQPLGGK+  GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV
Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298

Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366
             GRT++Y++IV GN   E G PESFNVL+KE+++LG++I+LE+ 
Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342