BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (1386 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|298291428|ref|YP_003693367.1| DNA-directed RNA polymerase subunit beta [Starkeya novella DSM 506] gi|296927939|gb|ADH88748.1| DNA-directed RNA polymerase, beta subunit [Starkeya novella DSM 506] Length = 1376 Score = 1783 bits (4618), Expect = 0.0, Method: Composition-based stats. Identities = 909/1366 (66%), Positives = 1114/1366 (81%), Gaps = 5/1366 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G RVRKFFGK E+ ++P+LIEVQKASYD FL ++ R ++G+QA FKSV Sbjct: 1 MAQTFTGRKRVRKFFGKITEVAEMPNLIEVQKASYDQFLQIDEPKGGRADDGIQAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+ FSGAAMLEFV YEF+PPK+DVD+C R +T+A PLK+TLRLIVFDVD TG+KS+ Sbjct: 61 FPISDFSGAAMLEFVRYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPDTGSKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYMGDIPLMTSNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+DIEFD+KDI++ RIDRRRK+PVTS L ALG+D EEIL+TFY I +++ Sbjct: 181 RIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLFALGLDGEEILNTFYETIAFTRTK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D W P M G K + LVD DTGE VIE+GKK+T + L EKG+K L I+ + Sbjct: 241 DGWRMPFDP-KRMKGYKAVADLVDADTGEVVIEAGKKVTVRQARQLAEKGLKALKISDEE 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G YVAED+VN TGEIY+EAG+ + EK L+++ ++PIL +D VN AYIRNTL Sbjct: 300 MVGQYVAEDLVNPSTGEIYVEAGEEVTEKMLKQLAELGYDELPILDIDHVNVGAYIRNTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN R+DAL DIYRVMRPG+ T A++MF+ LFFDS++YDLS VGRVKMNMRL+L Sbjct: 360 AIDKNLTREDALFDIYRVMRPGEPPTLDSAQAMFHSLFFDSERYDLSAVGRVKMNMRLDL 419 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D D VR +R+EDI+A+IK LV+LR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLLRM Sbjct: 420 DAEDTVRVLRREDILAVIKTLVELRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRM 479 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+SSVDID+VMPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RRLS Sbjct: 480 ERAIKERMSSVDIDTVMPQDLINAKPVAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS 539 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE PY Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIEAPY 599 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V D +V ++VVYLSAMEE Y+AQAN LD +G FTE+L+ CR AG+ +LV +++D Sbjct: 600 RRVKDSQVQDEVVYLSAMEEGKYYVAQANIPLDAEGRFTEDLIVCRHAGDVLLVTPDRVD 659 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++A+APFVGTGMESVVA+ Sbjct: 660 FMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMESVVARD 719 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGAAI A+R GI++QVDA RIVIR+ E + DPS SGVDIYRL KFQRSNQ+TC+NQRPLV Sbjct: 720 SGAAIAARRTGIIDQVDATRIVIRATEEN-DPSKSGVDIYRLQKFQRSNQSTCINQRPLV 778 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +VGD V++ DIIADGPSTDLGDLALGRN+LVAFMPW+GYNFEDS+L+SE + DVF+SI Sbjct: 779 RVGDRVKKGDIIADGPSTDLGDLALGRNILVAFMPWNGYNFEDSILLSENISKGDVFSSI 838 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDIL GKITPKG Sbjct: 839 HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQAGDILCGKITPKG 898 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV+GTVV+VR+FNRHG+DK+ER+ ++ERE Sbjct: 899 ESPMTPEEKLLRAIFGEKAADVRDTSLRVPPGVTGTVVEVRVFNRHGVDKDERAQAIERE 958 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE LA+D+DDEQ ILDRN++ RL E+L G+ V+GPKGFKK T ++ +++EYPRSQWW Sbjct: 959 EIERLAKDRDDEQAILDRNVFGRLAEMLDGKTGVAGPKGFKKDTAITRSVLAEYPRSQWW 1018 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 QFAV D+++ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVF+A+KR Sbjct: 1019 QFAVADDQLMGELEAIRNQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFIAVKR 1078 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1079 KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTPVDMVLNPLGVPSRMNVGQILETHLG 1138 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WAC GLG+ I I Y+ D++PL+ K+ G E I+ D+D ++ + + Sbjct: 1139 WACAGLGRVIDRAIESYRQTNDVAPLKDAFGKIYGKD---ETIASLDEDGLVELGSNLRR 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E I ML +A LD S QS L+DG TGE FDR VTVGYIYMLKL+H+ Sbjct: 1196 GVPIATPVFDGAREADIEHMLELAGLDSSAQSTLFDGRTGEQFDRKVTVGYIYMLKLHHL 1255 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1256 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L NS+T Sbjct: 1316 AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELMNSKT 1361 >gi|161619199|ref|YP_001593086.1| DNA-directed RNA polymerase subunit beta [Brucella canis ATCC 23365] gi|260566231|ref|ZP_05836701.1| DNA-directed RNA polymerase subunit beta [Brucella suis bv. 4 str. 40] gi|189043848|sp|A9M5R0|RPOB_BRUC2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|161336010|gb|ABX62315.1| DNA-directed RNA polymerase, beta subunit [Brucella canis ATCC 23365] gi|260155749|gb|EEW90829.1| DNA-directed RNA polymerase subunit beta [Brucella suis bv. 4 str. 40] Length = 1377 Score = 1780 bits (4609), Expect = 0.0, Method: Composition-based stats. Identities = 944/1376 (68%), Positives = 1137/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE IAQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSIAQANVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1374 >gi|256113798|ref|ZP_05454598.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis bv. 3 str. Ether] gi|265995155|ref|ZP_06107712.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis bv. 3 str. Ether] gi|262766268|gb|EEZ12057.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis bv. 3 str. Ether] Length = 1377 Score = 1780 bits (4609), Expect = 0.0, Method: Composition-based stats. Identities = 943/1376 (68%), Positives = 1137/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTIGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1374 >gi|306840291|ref|ZP_07473064.1| DNA-directed RNA polymerase, beta subunit [Brucella sp. BO2] gi|306289746|gb|EFM60932.1| DNA-directed RNA polymerase, beta subunit [Brucella sp. BO2] Length = 1377 Score = 1779 bits (4608), Expect = 0.0, Method: Composition-based stats. Identities = 944/1376 (68%), Positives = 1137/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY I Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYNTITYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1374 >gi|256061322|ref|ZP_05451470.1| DNA-directed RNA polymerase subunit beta [Brucella neotomae 5K33] gi|261325327|ref|ZP_05964524.1| DNA-directed RNA polymerase subunit beta [Brucella neotomae 5K33] gi|261301307|gb|EEY04804.1| DNA-directed RNA polymerase subunit beta [Brucella neotomae 5K33] Length = 1377 Score = 1779 bits (4607), Expect = 0.0, Method: Composition-based stats. Identities = 943/1376 (68%), Positives = 1137/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERVSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1374 >gi|17987032|ref|NP_539666.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis bv. 1 str. 16M] gi|62290154|ref|YP_221947.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 1 str. 9-941] gi|82700076|ref|YP_414650.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis biovar Abortus 2308] gi|148559302|ref|YP_001259162.1| DNA-directed RNA polymerase subunit beta [Brucella ovis ATCC 25840] gi|163843508|ref|YP_001627912.1| DNA-directed RNA polymerase subunit beta [Brucella suis ATCC 23445] gi|189024390|ref|YP_001935158.1| DNA-directed RNA polymerase beta subunit [Brucella abortus S19] gi|237815661|ref|ZP_04594658.1| DNA-directed RNA polymerase, beta subunit [Brucella abortus str. 2308 A] gi|254693945|ref|ZP_05155773.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 3 str. Tulya] gi|254701982|ref|ZP_05163810.1| DNA-directed RNA polymerase subunit beta [Brucella suis bv. 5 str. 513] gi|254710311|ref|ZP_05172122.1| DNA-directed RNA polymerase subunit beta [Brucella pinnipedialis B2/94] gi|254714308|ref|ZP_05176119.1| DNA-directed RNA polymerase subunit beta [Brucella ceti M644/93/1] gi|254717745|ref|ZP_05179556.1| DNA-directed RNA polymerase subunit beta [Brucella ceti M13/05/1] gi|254730489|ref|ZP_05189067.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 4 str. 292] gi|256031805|ref|ZP_05445419.1| DNA-directed RNA polymerase subunit beta [Brucella pinnipedialis M292/94/1] gi|256044890|ref|ZP_05447794.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|256159978|ref|ZP_05457693.1| DNA-directed RNA polymerase subunit beta [Brucella ceti M490/95/1] gi|256255206|ref|ZP_05460742.1| DNA-directed RNA polymerase subunit beta [Brucella ceti B1/94] gi|256369666|ref|YP_003107176.1| DNA-directed RNA polymerase beta subunit [Brucella microti CCM 4915] gi|260546699|ref|ZP_05822438.1| DNA-directed RNA polymerase subunit beta [Brucella abortus NCTC 8038] gi|260565508|ref|ZP_05835992.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis bv. 1 str. 16M] gi|260758200|ref|ZP_05870548.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 4 str. 292] gi|261214238|ref|ZP_05928519.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 3 str. Tulya] gi|261219589|ref|ZP_05933870.1| DNA-directed RNA polymerase subunit beta [Brucella ceti M13/05/1] gi|261222402|ref|ZP_05936683.1| DNA-directed RNA polymerase subunit beta [Brucella ceti B1/94] gi|261317875|ref|ZP_05957072.1| DNA-directed RNA polymerase subunit beta [Brucella pinnipedialis B2/94] gi|261322084|ref|ZP_05961281.1| DNA-directed RNA polymerase subunit beta [Brucella ceti M644/93/1] gi|261752550|ref|ZP_05996259.1| DNA-directed RNA polymerase subunit beta [Brucella suis bv. 5 str. 513] gi|265988904|ref|ZP_06101461.1| DNA-directed RNA polymerase subunit beta [Brucella pinnipedialis M292/94/1] gi|265991318|ref|ZP_06103875.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|265998368|ref|ZP_06110925.1| DNA-directed RNA polymerase subunit beta [Brucella ceti M490/95/1] gi|306844147|ref|ZP_07476741.1| DNA-directed RNA polymerase, beta subunit [Brucella sp. BO1] gi|41017775|sp|Q8YHP8|RPOB_BRUME RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|75496674|sp|Q57CP8|RPOB_BRUAB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|88909124|sp|Q2YM15|RPOB_BRUA2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166229285|sp|A5VR15|RPOB_BRUO2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|189043849|sp|B0CH41|RPOB_BRUSI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699377|sp|B2S687|RPOB_BRUA1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|17982686|gb|AAL51930.1| DNA-directed RNA polymerase beta chain [Brucella melitensis bv. 1 str. 16M] gi|62196286|gb|AAX74586.1| RpoB, DNA-directed RNA polymerase [Brucella abortus bv. 1 str. 9-941] gi|82616177|emb|CAJ11220.1| RNA polymerase Rpb2, domain 6:RNA polymerase, beta subunit:RNA polymerase Rpb2, domain 7:RNA polymerase Rpb2, domain 2:RNA po [Brucella melitensis biovar Abortus 2308] gi|148370559|gb|ABQ60538.1| DNA-directed RNA polymerase, beta subunit [Brucella ovis ATCC 25840] gi|163674231|gb|ABY38342.1| DNA-directed RNA polymerase, beta subunit [Brucella suis ATCC 23445] gi|189019962|gb|ACD72684.1| DNA-directed RNA polymerase beta subunit [Brucella abortus S19] gi|237788959|gb|EEP63170.1| DNA-directed RNA polymerase, beta subunit [Brucella abortus str. 2308 A] gi|255999828|gb|ACU48227.1| DNA-directed RNA polymerase beta subunit [Brucella microti CCM 4915] gi|260095749|gb|EEW79626.1| DNA-directed RNA polymerase subunit beta [Brucella abortus NCTC 8038] gi|260151576|gb|EEW86670.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis bv. 1 str. 16M] gi|260668518|gb|EEX55458.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 4 str. 292] gi|260915845|gb|EEX82706.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 3 str. Tulya] gi|260920986|gb|EEX87639.1| DNA-directed RNA polymerase subunit beta [Brucella ceti B1/94] gi|260924678|gb|EEX91246.1| DNA-directed RNA polymerase subunit beta [Brucella ceti M13/05/1] gi|261294774|gb|EEX98270.1| DNA-directed RNA polymerase subunit beta [Brucella ceti M644/93/1] gi|261297098|gb|EEY00595.1| DNA-directed RNA polymerase subunit beta [Brucella pinnipedialis B2/94] gi|261742303|gb|EEY30229.1| DNA-directed RNA polymerase subunit beta [Brucella suis bv. 5 str. 513] gi|262552836|gb|EEZ08826.1| DNA-directed RNA polymerase subunit beta [Brucella ceti M490/95/1] gi|263002102|gb|EEZ14677.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|264661101|gb|EEZ31362.1| DNA-directed RNA polymerase subunit beta [Brucella pinnipedialis M292/94/1] gi|306275590|gb|EFM57322.1| DNA-directed RNA polymerase, beta subunit [Brucella sp. BO1] Length = 1377 Score = 1779 bits (4607), Expect = 0.0, Method: Composition-based stats. Identities = 943/1376 (68%), Positives = 1137/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1374 >gi|254689460|ref|ZP_05152714.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 6 str. 870] gi|256257706|ref|ZP_05463242.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 9 str. C68] gi|260754984|ref|ZP_05867332.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 6 str. 870] gi|260883992|ref|ZP_05895606.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 9 str. C68] gi|297248548|ref|ZP_06932266.1| DNA-directed RNA polymerase, beta subunit [Brucella abortus bv. 5 str. B3196] gi|260675092|gb|EEX61913.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 6 str. 870] gi|260873520|gb|EEX80589.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 9 str. C68] gi|297175717|gb|EFH35064.1| DNA-directed RNA polymerase, beta subunit [Brucella abortus bv. 5 str. B3196] Length = 1377 Score = 1779 bits (4607), Expect = 0.0, Method: Composition-based stats. Identities = 942/1376 (68%), Positives = 1137/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K+ S LVD DTG+ V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSAE-RFKGMKIISDLVDADTGKVVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1374 >gi|254704525|ref|ZP_05166353.1| DNA-directed RNA polymerase subunit beta [Brucella suis bv. 3 str. 686] gi|261755209|ref|ZP_05998918.1| DNA-directed RNA polymerase subunit beta [Brucella suis bv. 3 str. 686] gi|261744962|gb|EEY32888.1| DNA-directed RNA polymerase subunit beta [Brucella suis bv. 3 str. 686] Length = 1377 Score = 1778 bits (4606), Expect = 0.0, Method: Composition-based stats. Identities = 942/1376 (68%), Positives = 1137/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDV++C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVNECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1374 >gi|254719298|ref|ZP_05181109.1| DNA-directed RNA polymerase subunit beta [Brucella sp. 83/13] gi|265984299|ref|ZP_06097034.1| DNA-directed RNA polymerase subunit beta [Brucella sp. 83/13] gi|306838942|ref|ZP_07471767.1| DNA-directed RNA polymerase, beta subunit [Brucella sp. NF 2653] gi|264662891|gb|EEZ33152.1| DNA-directed RNA polymerase subunit beta [Brucella sp. 83/13] gi|306405975|gb|EFM62229.1| DNA-directed RNA polymerase, beta subunit [Brucella sp. NF 2653] Length = 1377 Score = 1778 bits (4606), Expect = 0.0, Method: Composition-based stats. Identities = 942/1376 (68%), Positives = 1136/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+L +LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLEELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1374 >gi|23502120|ref|NP_698247.1| DNA-directed RNA polymerase subunit beta [Brucella suis 1330] gi|41017741|sp|Q8G069|RPOB_BRUSU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|23348081|gb|AAN30162.1| DNA-directed RNA polymerase, beta subunit [Brucella suis 1330] Length = 1377 Score = 1778 bits (4605), Expect = 0.0, Method: Composition-based stats. Identities = 943/1376 (68%), Positives = 1137/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSAE-RFKGMKIISDLVDADTGEAVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1374 >gi|225852740|ref|YP_002732973.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis ATCC 23457] gi|256263773|ref|ZP_05466305.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis bv. 2 str. 63/9] gi|254765276|sp|C0RJL1|RPOB_BRUMB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|225641105|gb|ACO01019.1| DNA-directed RNA polymerase, beta subunit [Brucella melitensis ATCC 23457] gi|263093884|gb|EEZ17835.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis bv. 2 str. 63/9] gi|326409265|gb|ADZ66330.1| DNA-directed RNA polymerase subunit beta [Brucella melitensis M28] gi|326538972|gb|ADZ87187.1| DNA-directed RNA polymerase, beta subunit [Brucella melitensis M5-90] Length = 1377 Score = 1776 bits (4601), Expect = 0.0, Method: Composition-based stats. Identities = 942/1376 (68%), Positives = 1137/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQ N LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQVNVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL++++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLVDMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1374 >gi|294852579|ref|ZP_06793252.1| DNA-directed RNA polymerase [Brucella sp. NVSL 07-0026] gi|294821168|gb|EFG38167.1| DNA-directed RNA polymerase [Brucella sp. NVSL 07-0026] Length = 1377 Score = 1775 bits (4598), Expect = 0.0, Method: Composition-based stats. Identities = 940/1376 (68%), Positives = 1135/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+ LRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVALRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P A G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYFAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFA++DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAIEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1374 >gi|225627712|ref|ZP_03785749.1| DNA-directed RNA polymerase, beta subunit [Brucella ceti str. Cudo] gi|260168939|ref|ZP_05755750.1| DNA-directed RNA polymerase subunit beta [Brucella sp. F5/99] gi|261758432|ref|ZP_06002141.1| DNA-directed RNA polymerase subunit beta [Brucella sp. F5/99] gi|225617717|gb|EEH14762.1| DNA-directed RNA polymerase, beta subunit [Brucella ceti str. Cudo] gi|261738416|gb|EEY26412.1| DNA-directed RNA polymerase subunit beta [Brucella sp. F5/99] Length = 1377 Score = 1774 bits (4595), Expect = 0.0, Method: Composition-based stats. Identities = 942/1376 (68%), Positives = 1136/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGV SRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVLSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1374 >gi|153009277|ref|YP_001370492.1| DNA-directed RNA polymerase subunit beta [Ochrobactrum anthropi ATCC 49188] gi|166229296|sp|A6X0A9|RPOB_OCHA4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|151561165|gb|ABS14663.1| DNA-directed RNA polymerase, beta subunit [Ochrobactrum anthropi ATCC 49188] Length = 1377 Score = 1774 bits (4595), Expect = 0.0, Method: Composition-based stats. Identities = 942/1376 (68%), Positives = 1138/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ R +EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRSDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFD PKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDAPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD E+ILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEDILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA D G K+ S L+D DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSA-DRFKGMKIISDLIDADTGEVVLEAGKKLTARSAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D +N YIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHINIGGYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDERGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME+VVA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEAVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E LDPS SGVDIYRLMKFQRSNQNTC+NQRP Sbjct: 720 RDSGAAIAARRGGVVDQVDATRIVIRATED-LDPSKSGVDIYRLMKFQRSNQNTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD +++ DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDPIQKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK + ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGSTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVDDEKLQGELEALRGQYDESKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI LI+ Y+ +I PLR LE + E + YDDDSVL +A Q Sbjct: 1139 LGWACAGMGKKIGELIDVYRKTANIEPLRDTLEHIYPDNDRNEPVRSYDDDSVLMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTRDEQQQALPD 1374 >gi|110634169|ref|YP_674377.1| DNA-directed RNA polymerase subunit beta [Mesorhizobium sp. BNC1] gi|122965927|sp|Q11HB3|RPOB_MESSB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|110285153|gb|ABG63212.1| DNA-directed RNA polymerase subunit beta [Chelativorans sp. BNC1] Length = 1379 Score = 1773 bits (4593), Expect = 0.0, Method: Composition-based stats. Identities = 934/1372 (68%), Positives = 1141/1372 (83%), Gaps = 2/1372 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTQTFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPQGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ F+G AMLEFV YEF+ PKFD ++C RDLTYA PLK+TLRLIVFD+DE TG+K Sbjct: 61 SVFPISDFAGTAMLEFVKYEFEAPKFDTEECRQRDLTYAAPLKVTLRLIVFDIDEDTGSK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS LMALGMD EEILSTFY K+ + + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILSTFYNKLTFIR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K ++ ++D DTGE V+E+GKK+T+ + + L +KG+K + T Sbjct: 241 DGDNWRVPFSAE-RFRGMKATADIIDADTGEVVLEAGKKMTARMARQLADKGLKAIRATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AEDIVN +TGEI++EAGD IDEK+L+ + + ++ L +D VN YIRN Sbjct: 300 DDLLGNYLAEDIVNMKTGEIFLEAGDEIDEKTLKILLETAGNEVKFLDIDHVNIGGYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLV DKN+ R+DAL DIYRVMRPG+ T AE+MF+ LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLVADKNESRQDALFDIYRVMRPGEPPTLETAEAMFHSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD PD VR +R ED++A+++ LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 ELDCPDTVRVLRSEDMVAVVRTLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIET Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIET 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DGKVT +VVYLSAMEE Y+AQAN+++DE+G F +E V CR AGE I+ PRE Sbjct: 600 PYRKIVDGKVTEEVVYLSAMEEAKHYVAQANATIDENGGFADEFVVCRHAGEVIMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VVA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E +D S SGVDIYRL KFQRSNQNTC+NQRP Sbjct: 720 RDSGAAIAARRTGVVDQVDATRIVIRATED-VDASQSGVDIYRLQKFQRSNQNTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V +D+FT Sbjct: 779 LVRVGDLINKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVRDDIFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y+RL E+L G+ A++GPKGFKK L+ +L+ EYPRSQ Sbjct: 959 REEIERLAKDRDDEQSILDRNVYARLSEMLIGKEAIAGPKGFKKGGALTKELLGEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK+ L+ RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQSELEALRAQYDESKNALQQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VDIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKMQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+G++I LI+ YK GDI PLR+ +E +I E + YDD+SV+R++EQ Sbjct: 1139 LGWACAGMGRQIGELIDAYKEAGDIKPLRAKIESLIPDNDRNEPVRQYDDESVVRLSEQL 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GV ++TPVFDGA E IN ML A L+ SGQ LYDG TGE FDR VTVGYIYMLKL+ Sbjct: 1199 RRGVSIATPVFDGAHESDINEMLEEAGLNSSGQVTLYDGRTGEEFDRKVTVGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++LENS ++ Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENSSRFDTP 1370 >gi|254706579|ref|ZP_05168407.1| DNA-directed RNA polymerase subunit beta [Brucella pinnipedialis M163/99/10] gi|261314038|ref|ZP_05953235.1| DNA-directed RNA polymerase subunit beta [Brucella pinnipedialis M163/99/10] gi|261303064|gb|EEY06561.1| DNA-directed RNA polymerase subunit beta [Brucella pinnipedialis M163/99/10] Length = 1377 Score = 1773 bits (4592), Expect = 0.0, Method: Composition-based stats. Identities = 942/1376 (68%), Positives = 1136/1376 (82%), Gaps = 2/1376 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFV YEFDPPKFDVD+C RDL Y+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIQDFSGASMLEFVRYEFDPPKFDVDECRQRDLIYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ Sbjct: 181 AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T Sbjct: 241 DGDNWRIPYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRN Sbjct: 300 DDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE Sbjct: 600 PYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITP Sbjct: 839 SIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q Sbjct: 1139 LGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQV 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 KRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTRKAEQPALPD 1374 >gi|150396199|ref|YP_001326666.1| DNA-directed RNA polymerase subunit beta [Sinorhizobium medicae WSM419] gi|166229307|sp|A6U851|RPOB_SINMW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|150027714|gb|ABR59831.1| DNA-directed RNA polymerase, beta subunit [Sinorhizobium medicae WSM419] Length = 1380 Score = 1773 bits (4591), Expect = 0.0, Method: Composition-based stats. Identities = 967/1382 (69%), Positives = 1158/1382 (83%), Gaps = 2/1382 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM++ RP+EGLQA FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPQGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFVSYEF+ PKFDV++C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIKDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ++YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+H RIDRRRK+PVTS LMALGMD EEIL TFY K +Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYQR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G+ W P D + G K + L+D DTGE V+E GKKLT LL+ L++KG+K L T Sbjct: 241 DGEGWRVPFQP-DALKGQKALADLIDADTGEVVVEGGKKLTPRLLRQLQDKGLKALKATD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN ETGEIY+EAGD IDEK+L I + +IP+L +D +N AYIRN Sbjct: 300 DDLYGNYLAEDVVNFETGEIYLEAGDEIDEKTLPVILSAGFDEIPVLDIDHINIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R+DAL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLAADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD VR +RKEDI+A++K+LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLDVPDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DGKVT+DVVYLSAMEE ++AQANS LDEDGSF+EE V CR AGE +L PR+ Sbjct: 600 PYRKIVDGKVTSDVVYLSAMEEAKYHVAQANSVLDEDGSFSEEFVVCRHAGEVMLAPRDN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 I+ +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGME VVA Sbjct: 660 INLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATED-LDPSKSGVDIYRLQKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD + + DIIADGPSTDLGDLALGRN LVAFMPW+GYN+EDS+L+SER+V +DVFT Sbjct: 779 LVTVGDVLNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y+RL+++L G AV+GPKGFKK T LS+ +ISEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYARLVDMLRGHVAVAGPKGFKKGTELSNAVISEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FA++DEK Q +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAIEDEKAQGEIEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VD+VLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI ++++ YKA DI PLR ++ VIG+G E I YDD+S++R+AEQ Sbjct: 1139 LGWACAGMGKKIGAMLDAYKAGADIQPLRDTIDSVIGSGPKGEPIKQYDDESIVRLAEQT 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GV ++TPVFDGA E +N ML A L +GQS LYDG TGE FDR VTVGYIYMLKLN Sbjct: 1199 RRGVSIATPVFDGAVEADVNEMLEQAGLKVTGQSTLYDGRTGETFDRQVTVGYIYMLKLN 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LENS+ ++PD Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVDEVGASAQLPDA 1378 Query: 1381 NK 1382 + Sbjct: 1379 AE 1380 >gi|15965101|ref|NP_385454.1| DNA-directed RNA polymerase subunit beta [Sinorhizobium meliloti 1021] gi|307314836|ref|ZP_07594429.1| DNA-directed RNA polymerase, beta subunit [Sinorhizobium meliloti BL225C] gi|307322135|ref|ZP_07601509.1| DNA-directed RNA polymerase, beta subunit [Sinorhizobium meliloti AK83] gi|41018106|sp|Q92QH7|RPOB_RHIME RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|15074281|emb|CAC45927.1| Probable DNA-directed RNA polymerase beta chain [Sinorhizobium meliloti 1021] gi|306892220|gb|EFN23032.1| DNA-directed RNA polymerase, beta subunit [Sinorhizobium meliloti AK83] gi|306898950|gb|EFN29597.1| DNA-directed RNA polymerase, beta subunit [Sinorhizobium meliloti BL225C] Length = 1380 Score = 1771 bits (4587), Expect = 0.0, Method: Composition-based stats. Identities = 968/1382 (70%), Positives = 1160/1382 (83%), Gaps = 2/1382 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM++ RP+EGLQA FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPQGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFVSYEF+ PKFDV++C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIKDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ++YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+H RIDRRRK+PVTS LMALGMD EEIL TFY K +Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYQR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G+ W P D + G K + ++D DTGE V+ESGKKLT LL+ L+EKG+K L T Sbjct: 241 DGEGWRVPFQP-DALKGQKTLADMIDADTGEVVVESGKKLTPRLLRQLQEKGLKALKATD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN ETGEIY+EAGD IDEK+L I + +IP+L +D +N AYIRN Sbjct: 300 DDLYGNYLAEDVVNFETGEIYLEAGDEIDEKTLPVILSAGFDEIPVLDIDHINIGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R+DAL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLSADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD VR +RKEDI+A++K+LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLDVPDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DGKVTNDVVYLSAMEE ++AQANS LD+DGSF+EE V CR AGE +L PR+ Sbjct: 600 PYRKIVDGKVTNDVVYLSAMEEAKYHVAQANSVLDDDGSFSEEFVVCRHAGEVMLAPRDN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 I+ +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGME VVA Sbjct: 660 INLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIAARRGGIVDQVDATRIVIRATED-LDPSKSGVDIYRLQKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD + + DIIADGPSTDLGDLALGRN LVAFMPW+GYN+EDS+L+SER+V +DVFT Sbjct: 779 LVTVGDVINKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y+RL+++L G AV+GPKGFKK T LS+ +ISEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYARLVDMLRGHVAVAGPKGFKKGTELSNVVISEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FA++DEK Q +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAIEDEKAQGEIEALRAQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VD+VLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI ++++ YKA DI PLR ++ VIG+G E I YDD+S++R+AEQ Sbjct: 1139 LGWACAGMGKKIGAMLDAYKAGADIQPLRDTIDSVIGSGPKGEPIKQYDDESIVRLAEQT 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GV ++TPVFDGA E +N ML A L +GQS LYDG TGE FDR VTVGYIYMLKLN Sbjct: 1199 RRGVSIATPVFDGAVEADVNEMLEQAGLKVTGQSTLYDGRTGETFDRQVTVGYIYMLKLN 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LENS+ + ++PD Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVDDVGSTAQLPDA 1378 Query: 1381 NK 1382 + Sbjct: 1379 AE 1380 >gi|27380521|ref|NP_772050.1| DNA-directed RNA polymerase subunit beta [Bradyrhizobium japonicum USDA 110] gi|41017724|sp|Q89J74|RPOB_BRAJA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|27353685|dbj|BAC50675.1| DNA-directed RNA polymerase beta chain [Bradyrhizobium japonicum USDA 110] Length = 1372 Score = 1769 bits (4583), Expect = 0.0, Method: Composition-based stats. Identities = 905/1378 (65%), Positives = 1122/1378 (81%), Gaps = 6/1378 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPQGGRLDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG +MLEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGAK Sbjct: 60 SVFPISDFSGTSMLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAK 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS + ALG+D E ILSTFY KI+Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLMFALGLDGEAILSTFYKKILYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P A + G + L+D DTG+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 TKEGWRVPFDA-NRFRGYSTINDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRLSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEI+ EAG+ I +K+++ + +++P+L +D VN AYIRN Sbjct: 299 EELVGNYLAEDLVNPKTGEIHAEAGEEITDKNMKALNEQGYKELPLLDIDHVNVGAYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNMRL Sbjct: 359 TLSADKNMTREDALFDIYRVMRPGEPPTLDSAQAMFQSLFFDAERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD R +RKEDI+++IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 DLDAPDTQRTLRKEDILSVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DG+VT++VVYLSAMEE +AQAN LD G FTE+LV CR AGE + V +K Sbjct: 599 PYRKVKDGRVTDEVVYLSAMEEGRYTVAQANVPLDPKGRFTEDLVVCRHAGEVLPVTPDK 658 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VVA Sbjct: 659 VDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVA 718 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R+G+++Q+DA R+VIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQRP Sbjct: 719 RDSGAAIAARRSGVIDQIDATRVVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQRP 777 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDVFT Sbjct: 778 LVKVGDIVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFT 837 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITP Sbjct: 838 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITP 897 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++E Sbjct: 898 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIE 957 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y+RL E+L G+ ++GPKGFKK T ++ ++ EYP+SQ Sbjct: 958 REEIERLAKDRDDEQAILDRNVYNRLAELLEGRQGIAGPKGFKKDTKITRAVLEEYPKSQ 1017 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1018 WWLFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1077 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1078 KRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1137 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC GLGK+I ++ Y + DI PL+ L+KV G E I +D+ ++ + Sbjct: 1138 LGWACAGLGKRIGQTVDAYLSKQDIKPLKETLKKVYGED---ETIKSLNDNELIELGHNL 1194 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 GVP++TPVFDGA E I ML++A LD SGQS +YDG TG+PFDR VTVGYIYMLKL+ Sbjct: 1195 SRGVPIATPVFDGAKEADIEEMLKLAGLDASGQSTVYDGRTGDPFDRKVTVGYIYMLKLH 1254 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1255 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1314 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ + E Sbjct: 1315 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKMGPAPTSEAAE 1372 >gi|220921892|ref|YP_002497193.1| DNA-directed RNA polymerase subunit beta [Methylobacterium nodulans ORS 2060] gi|254765296|sp|B8IS78|RPOB_METNO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|219946498|gb|ACL56890.1| DNA-directed RNA polymerase, beta subunit [Methylobacterium nodulans ORS 2060] Length = 1374 Score = 1769 bits (4581), Expect = 0.0, Method: Composition-based stats. Identities = 899/1382 (65%), Positives = 1124/1382 (81%), Gaps = 8/1382 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R+RKFFGK E+ ++P+LIEVQKASYD FLM++ RP+EGLQ+ FK Sbjct: 1 MANTLV--GRKRIRKFFGKIREVAEMPNLIEVQKASYDQFLMVDEPEGGRPDEGLQSVFK 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FS A+LEFV Y F+ PK+DVD+C R +T+A PLK+TLRLIVFDVD TGAK Sbjct: 59 SVFPISDFSSTALLEFVKYTFEAPKYDVDECRQRGITFAAPLKVTLRLIVFDVDPDTGAK 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT++GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 119 SVKDIKEQDVYMGDMPLMTENGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A RIIP +G W+D+EFD+KDI++ RIDR+RK+PVTS L ALG+D EEILSTFY +I Y++ Sbjct: 179 AARIIPYRGSWLDVEFDAKDIVYARIDRKRKIPVTSLLFALGLDGEEILSTFYNRISYTR 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G W P A L G K S+ L+D D+GE V+E+GKKLT+ + + EKGV L T Sbjct: 239 DGADWRVPYDAERL-KGFKASTDLIDADSGEVVLEAGKKLTARSARQIAEKGVTALRATD 297 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEIY EAGD I EK L+ + I +IP+L +D VN YIRN Sbjct: 298 EDLIGQYIAEDMVNYKTGEIYAEAGDEISEKLLKGLADVGIEEIPVLDIDHVNVGPYIRN 357 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN +R+ AL DIYRVMRPG+ T AE+MF+ LFFD+++YDLS VGRVKMNMRL Sbjct: 358 TLAVDKNSNREGALFDIYRVMRPGEPPTLDTAEAMFHSLFFDAERYDLSAVGRVKMNMRL 417 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD +R +R++D++A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYRLGLL Sbjct: 418 DLDAPDTMRTLRRDDMLAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLL 477 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RR Sbjct: 478 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRR 537 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIET Sbjct: 538 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIET 597 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 P+R+V +G VT++VVYLSAMEE Y+AQA++++DE+ TE+LV CR AGE I+V ++ Sbjct: 598 PFRRVKNGVVTDEVVYLSAMEEARYYVAQASAAMDENRRLTEDLVVCRRAGEVIVVAPDR 657 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++A+APFVGTGMESVVA Sbjct: 658 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMESVVA 717 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R+GIV+QVDA RIVIR+ E DP+ GVDIYRL KFQRSNQ+TC+ Q+P Sbjct: 718 RDSGAAIAARRSGIVDQVDATRIVIRATEET-DPTKPGVDIYRLQKFQRSNQSTCITQKP 776 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VG++V + DIIADGPST+ G+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVFT Sbjct: 777 LVRVGEQVGKGDIIADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFT 836 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+ GDILVGKITP Sbjct: 837 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHAGDILVGKITP 896 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV+GT+V+VR+FNRHG+DK+ER+ ++E Sbjct: 897 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDERAQAIE 956 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN Y+RL ++L GQ V+GPKGFKK TVL+ + +++YPRSQ Sbjct: 957 REEIERLAKDRDDEQAILDRNTYARLADVLVGQAPVAGPKGFKKDTVLTREGLADYPRSQ 1016 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV D+++ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1017 WWQFAVVDDRLMTEIEAMQKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1076 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1077 KRKIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1136 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG+++ ++ Y + D +PLR + ++ + D + + Sbjct: 1137 LGWAAAGLGRQVAQAVDAYLRSHDATPLREQMRRIYSEAE----LDGLSDQDLAEIGNNL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++TPVF+GA E I +ML MA LD SGQS LYDG TGEPFDR VTVGYIYMLKL+ Sbjct: 1193 RRGVPMATPVFNGAKEADIEAMLEMAGLDRSGQSTLYDGRTGEPFDRKVTVGYIYMLKLH 1252 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1253 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1312 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L +S+ + ++E P+ Sbjct: 1313 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELISSKRAANDQLEAPPEA 1372 Query: 1381 NK 1382 + Sbjct: 1373 AE 1374 >gi|222085668|ref|YP_002544198.1| DNA-directed RNA polymerase, beta subunit [Agrobacterium radiobacter K84] gi|254765265|sp|B9JDS1|RPOB_AGRRK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|221723116|gb|ACM26272.1| DNA-directed RNA polymerase, beta subunit [Agrobacterium radiobacter K84] Length = 1380 Score = 1768 bits (4580), Expect = 0.0, Method: Composition-based stats. Identities = 969/1382 (70%), Positives = 1166/1382 (84%), Gaps = 2/1382 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQ+ FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQSVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPIT FSGA+MLEFVSYEF+PPKFDVD+C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQS+YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS LMALGMD EEILSTFY K +Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILSTFYTKSLYER 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P +A L GAK + ++D DTGE V+E GKKLT LL+ L++KG+K L T Sbjct: 241 SGDGWRIPFNAETL-KGAKTVTDMIDADTGEVVVEGGKKLTPRLLRQLQDKGLKALKATD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L GL++AEDIVN +TGEIY+EAGD IDEK+L I + +IP+L +D +N AYIRN Sbjct: 300 EDLYGLFLAEDIVNFQTGEIYLEAGDEIDEKTLPVILKAGFDEIPVLGIDHINVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R+DAL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLSADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +L+ D VR +RK+DI+A++K+LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLEVADTVRVLRKDDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR++ DGKVT DV+YLSAMEE Y+AQAN+ LD +GSF EE V CR AGE +L PR+ Sbjct: 600 PYRRIIDGKVTTDVLYLSAMEEAKYYVAQANAELDAEGSFIEEFVVCRHAGEVMLAPRDN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 I+ +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGME VVA Sbjct: 660 INLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E LDPS SGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIGARRGGVVDQVDATRIVIRATED-LDPSKSGVDIYRLMKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD V + DI+ADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 779 LVTVGDFVNKGDILADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL+E+L GQ A++GPK FKK T LS+ ++SEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLIEMLRGQVALAGPKNFKKGTELSNAVVSEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEKVQ +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAVEDEKVQGELEALRGQYDESKSHLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VDIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+G++I LI YKANG+I PLR ++ V+G G ++ + +YDD SVLR+A+QW Sbjct: 1139 LGWACAGMGRQIGELIEAYKANGNIEPLRKTIDMVVGDGPKSDDVHNYDDASVLRLADQW 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E +N ML MA L E+GQS LYDG TGE FDR VTVGYIYMLKLN Sbjct: 1199 KRGVSIATPVFDGAGEADVNEMLAMAGLKETGQSTLYDGRTGEQFDRQVTVGYIYMLKLN 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LENS+ + ++PD Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVDDLQAAGQLPDA 1378 Query: 1381 NK 1382 + Sbjct: 1379 AE 1380 >gi|227821748|ref|YP_002825718.1| DNA-directed RNA polymerase subunit beta [Sinorhizobium fredii NGR234] gi|254765299|sp|C3MAX2|RPOB_RHISN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|227340747|gb|ACP24965.1| DNA-directed RNA polymerase, beta subunit [Sinorhizobium fredii NGR234] Length = 1380 Score = 1768 bits (4579), Expect = 0.0, Method: Composition-based stats. Identities = 963/1382 (69%), Positives = 1161/1382 (84%), Gaps = 2/1382 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPAGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSGA+MLEFVSYEF+PPKFDV++C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPIKDFSGASMLEFVSYEFEPPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ++YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+H RIDRRRK+PVTS LMALGMD EEILSTFY + +Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILSTFYTQSLYQR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P D + G K + ++D DTGE V+E+GKKLT LL+ L+EKG+K L T Sbjct: 241 DGDGWRVPFQP-DALKGQKAIAEMIDADTGEVVVEAGKKLTPRLLRQLQEKGLKALKSTD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AED+VN ETGEIY+EAGD IDEK+L I + +IP+L +D +N AYIRN Sbjct: 300 DELYGNYLAEDVVNYETGEIYLEAGDEIDEKTLPVILSAGFDEIPVLDIDHINVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R+DAL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLAADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD VR +RKEDI+A++K+LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLDVPDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLS+ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSRFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DG VT+DVVYLSAME+ ++AQANS L++DGSF EE V CR AGE +L PR+ Sbjct: 600 PYRKIVDGNVTSDVVYLSAMEDAKYHVAQANSVLNDDGSFAEEFVVCRHAGEVMLAPRDN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 I+ +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGMESVVA Sbjct: 660 INLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMESVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIAARRGGVVDQVDATRIVIRATED-LDPSKSGVDIYRLQKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD V + DIIADGPSTDLGDLALGRN LVAFMPW+GYN+EDS+L+SER+V +DVFT Sbjct: 779 LVTVGDLVNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GT+V+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y+RL+++L G AV+GPKGFKK T LS+ +ISEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYARLIDMLRGHVAVAGPKGFKKGTELSNAVISEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEK Q +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAVEDEKAQGEIEALRAQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VD+VLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI ++++ Y +GDI PLR+ ++ VIG+G E I YDD+S++R+AEQ Sbjct: 1139 LGWACAGMGKKIGAMLDAYHESGDIKPLRTTIDDVIGSGPKGEPIKQYDDESIVRLAEQT 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GV ++TPVFDGA E +N ML A L +GQS LYDG TG+ FDR VTVGYIYMLKLN Sbjct: 1199 RRGVSIATPVFDGAVEADVNEMLEKAGLKVTGQSTLYDGRTGDAFDRQVTVGYIYMLKLN 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LENS+ + ++PD Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVDDLGTTAQLPDA 1378 Query: 1381 NK 1382 + Sbjct: 1379 AE 1380 >gi|316933512|ref|YP_004108494.1| DNA-directed RNA polymerase subunit beta [Rhodopseudomonas palustris DX-1] gi|315601226|gb|ADU43761.1| DNA-directed RNA polymerase, beta subunit [Rhodopseudomonas palustris DX-1] Length = 1374 Score = 1768 bits (4579), Expect = 0.0, Method: Composition-based stats. Identities = 905/1380 (65%), Positives = 1117/1380 (80%), Gaps = 8/1380 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM+ P RP+EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVAEPPGGRPDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FS A+MLEFV YEF+PPK+DVD+C R +TYA PLK+TLRLIVFD+DE TGA+ Sbjct: 60 SVFPISDFSNASMLEFVRYEFEPPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETGAR 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A RIIP +G W+DIEFD+KDI++ RIDRRRK+PVTS + ALG+D EEILSTFY KI+Y + Sbjct: 180 AARIIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLMFALGLDGEEILSTFYNKILYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 D W P + G + L+D DTG+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 TKDGWRVPFDV-NRFRGYSTVNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRMSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEIY EAG+ I +K+L+ + +++P+L +D VN YIRN Sbjct: 299 EELVGNYLAEDLVNPKTGEIYAEAGEEITDKALKMLNEQGYKELPLLDIDHVNVGPYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNMRL Sbjct: 359 TLNVDKNMTREDALFDIYRVMRPGEPPTLESAQNMFQSLFFDAERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD R +RKEDI+A+IK LV LR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 DLDAPDTHRTLRKEDILAVIKTLVGLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPR 658 PYR+V DG VT++VVYLSAMEE +AQAN LD G FT++L+ CR + +L+P Sbjct: 599 PYRRVKDGHVTDEVVYLSAMEEGRYAVAQANVPLDAKGRFTDDLIVCRAGGTRDVVLIPA 658 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +++D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME V Sbjct: 659 DQVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGV 718 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R GI++Q+DA R+VIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQ Sbjct: 719 VARDSGAAIAARRTGIIDQIDATRVVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQ 777 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDV Sbjct: 778 RPLVKVGDHVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDV 837 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEE+TRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 838 FTSIHIEEFEVMARDTKLGPEEVTRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKI 897 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+++ Sbjct: 898 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALA 957 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDEQ ILDRN+Y RL ++L G+ ++GPKGFKK T ++ ++ EYP+ Sbjct: 958 IEREEIERLAKDRDDEQAILDRNVYGRLADLLDGRQGIAGPKGFKKDTKITRAVLEEYPK 1017 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1018 SQWWLFAAPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFV 1077 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI E Sbjct: 1078 AVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE 1137 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC GLGK+I I+ Y + D+ PLR L K+ G E I DD +L + Sbjct: 1138 THLGWACAGLGKRIGQTIDTYYQSQDLKPLRETLRKIYGED---ETIKSLDDGELLELGR 1194 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 + GVP++TPVFDGA E I ML++A D SGQS +YDG TG+ FDR VTVGYIYMLK Sbjct: 1195 NLRHGVPIATPVFDGAKEADIEEMLKLAGFDASGQSTVYDGRTGDQFDRRVTVGYIYMLK 1254 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1255 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1314 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 SDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ N+ E Sbjct: 1315 SDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKLGNTPPAEAAE 1374 >gi|158422511|ref|YP_001523803.1| DNA-directed RNA polymerase subunit beta [Azorhizobium caulinodans ORS 571] gi|182676552|sp|A8HTY8|RPOB_AZOC5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158329400|dbj|BAF86885.1| DNA-directed RNA polymerase beta subunit [Azorhizobium caulinodans ORS 571] Length = 1376 Score = 1768 bits (4578), Expect = 0.0, Method: Composition-based stats. Identities = 907/1382 (65%), Positives = 1115/1382 (80%), Gaps = 6/1382 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RKFFGK E+ ++P+LIEVQKASYD FL + R ++GLQA FKSV Sbjct: 1 MAQTFTGRKRIRKFFGKIKEVAEMPNLIEVQKASYDQFLQIEEPKGGRADDGLQAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+ FSGAAMLEFV YEF+PPK+DVD+C R +T+A PLK+TLRLIVFDVD TGAKS+ Sbjct: 61 FPISDFSGAAMLEFVRYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +Y GD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYTGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+DIEFD+KDI++ RIDRRRK+PVTS L ALG+DSEEIL+TFY KI+Y++ Sbjct: 181 RIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLFALGLDSEEILNTFYEKILYTRAK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D W P M G K + L+D DTGE V+E+GKKLT + L EKG+K L I+ D Sbjct: 241 DGWRMPFDP-KRMKGYKAVADLIDADTGEVVVEAGKKLTVRAARQLVEKGLKALKISDDE 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y+ EDIVN TGEIY EAG+ I EK L+ + + +IP+L +D +N AYIRNTL Sbjct: 300 MVGQYIGEDIVNVHTGEIYAEAGEEITEKVLKTLGDAGFDEIPVLDIDHINTGAYIRNTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN R++AL DIYRVMRPG+ T A++MF+ LFFD+++YDLS VGRVKMNMRL+L Sbjct: 360 SADKNSSREEALFDIYRVMRPGEPPTLDSAQAMFHSLFFDAERYDLSAVGRVKMNMRLDL 419 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D D VR +R+EDI+A+IK LV+LR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLLRM Sbjct: 420 DAEDTVRILRREDILAVIKTLVELRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRM 479 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+SSVDID+VMPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RRLS Sbjct: 480 ERAIKERMSSVDIDTVMPQDLINAKPVAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS 539 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE PY Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIEAPY 599 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG+VT++VVYLSAMEE Y+AQAN LD DG F E+LV CR AG+ ++V +++D Sbjct: 600 RRVVDGRVTDEVVYLSAMEEGKYYVAQANVPLDTDGRFQEDLVICRHAGDVLVVSPDRVD 659 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++++AP VGTGME+VVA+ Sbjct: 660 FMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRSQAPLVGTGMEAVVARD 719 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGAAI A+RAG+++QVDA RIVIR+ G+ DPS SGVDIYRLMKFQRSNQ+TC+NQRPLV Sbjct: 720 SGAAIAARRAGVIDQVDATRIVIRAT-GETDPSKSGVDIYRLMKFQRSNQSTCINQRPLV 778 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +VGD V++ DIIADGPST+LG+LALGRN+LVAFMPW+GYN+EDS+L+SE +V EDVFTSI Sbjct: 779 RVGDVVKKGDIIADGPSTELGELALGRNVLVAFMPWNGYNYEDSILLSENIVKEDVFTSI 838 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFE MARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITPKG Sbjct: 839 HIEEFEAMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKG 898 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P G +GT+V+VR+FNRHG+DK+ER++++ERE Sbjct: 899 ESPMTPEEKLLRAIFGEKAADVRDTSLRLPPGTTGTIVEVRVFNRHGVDKDERALAIERE 958 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE LA+D+DDEQ ILDRN+Y RL E+L G+ A++GPK FKK T ++ D + EYPRSQWW Sbjct: 959 EIERLAKDRDDEQAILDRNVYGRLSEMLVGKVAIAGPKAFKKDTEITKDALGEYPRSQWW 1018 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 FAV D+ + +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+KR Sbjct: 1019 LFAVADDALMSELEAIRAQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKR 1078 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1079 KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTNVDIVLNPLGVPSRMNVGQILETHLG 1138 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WAC GLG+++ + ++ Y + D LR+ L KV G + I D+ + + E + Sbjct: 1139 WACAGLGRQVAAAVDAYYGSKDQQVLRNALVKVYG----PDDIEVLDEKQITELGENLRK 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E I L A L+ SGQS L+DG TGEPFDR VTVGYIYMLKL+H+ Sbjct: 1195 GVPMATPVFDGAHEADIEEHLEKAGLNPSGQSTLFDGRTGEPFDRKVTVGYIYMLKLHHL 1254 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1255 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 GRT+VYE+IV G DTFE+G PESFNVLVKEM++LGL+++L NS+T + Sbjct: 1315 AGRTKVYEAIVRGEDTFESGIPESFNVLVKEMRSLGLNVELLNSKTGRQTNPGTRENLPA 1374 Query: 1383 CE 1384 E Sbjct: 1375 AE 1376 >gi|148256402|ref|YP_001240987.1| DNA-directed RNA polymerase subunit beta [Bradyrhizobium sp. BTAi1] gi|158513289|sp|A5ELN7|RPOB_BRASB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|146408575|gb|ABQ37081.1| DNA-directed RNA polymerase subunit beta [Bradyrhizobium sp. BTAi1] Length = 1372 Score = 1767 bits (4577), Expect = 0.0, Method: Composition-based stats. Identities = 907/1378 (65%), Positives = 1120/1378 (81%), Gaps = 6/1378 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ RP+EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPTGGRPDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG +MLEFV YEF+PPK+DVD+C R +T+A PLK+TLRLIVFD+DE TGAK Sbjct: 60 SVFPISDFSGTSMLEFVRYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAK 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D E+ILSTFY K++Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEQILSTFYKKLIYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P A + G + L+D DTG+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 IKEGWRVPFDA-NRFRGYSTVNDLIDADTGKVVLEAGKKLTVRTARQLQEKGLKALRMSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEIY EAG+ I +K + + +D+P+L +D VN YIRN Sbjct: 299 EELLGNYIAEDLVNPKTGEIYAEAGEEITDKLFKVLNEQGYKDLPLLDIDHVNVGPYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNMRL Sbjct: 359 TLSADKNMTREDALFDIYRVMRPGEPPTLDSAQAMFQSLFFDAERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD PD R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 ELDAPDTQRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DG+VT++VVYLSAMEE +AQAN LD G FTE+LV CR AGE + + +K Sbjct: 599 PYRKVRDGRVTDEVVYLSAMEEGRYRVAQANVPLDAKGRFTEDLVVCRHAGEVVPMTPDK 658 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VVA Sbjct: 659 VDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVA 718 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R+G+V+Q+DA R+VIR+ E LDP+ SGVDIYRLMKFQRSNQ+TC+NQRP Sbjct: 719 RDSGAAIAARRSGVVDQIDATRVVIRATED-LDPTKSGVDIYRLMKFQRSNQSTCINQRP 777 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDVFT Sbjct: 778 LVKVGDIVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFT 837 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITP Sbjct: 838 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITP 897 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++E Sbjct: 898 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIE 957 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+YSRL ++L G+ +SGPKGFKK T ++ ++ EYP+SQ Sbjct: 958 REEIERLAKDRDDEQAILDRNVYSRLADMLDGRQGISGPKGFKKDTKITRAVLDEYPKSQ 1017 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1018 WWLFASANDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1077 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1078 KRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1137 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC GLGK+I ++ Y + D+ PL+ L+++ G E I +D+ +L + Sbjct: 1138 LGWACAGLGKRIAQTVDAYLSKQDVKPLKETLKRIYGED---ETIKSLNDNELLELGHNL 1194 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 GVP++TPVFDGA E I ML++A +D SGQS +YDG TG+PFDR VTVGYIYMLKL+ Sbjct: 1195 SRGVPIATPVFDGAKEADIEEMLKLAGMDASGQSTVYDGRTGDPFDRKVTVGYIYMLKLH 1254 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1255 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1314 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ + E Sbjct: 1315 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKLGPAPTSEAAE 1372 >gi|163759407|ref|ZP_02166493.1| DNA-directed RNA polymerase beta subunit [Hoeflea phototrophica DFL-43] gi|162283811|gb|EDQ34096.1| DNA-directed RNA polymerase beta subunit [Hoeflea phototrophica DFL-43] Length = 1380 Score = 1767 bits (4576), Expect = 0.0, Method: Composition-based stats. Identities = 939/1382 (67%), Positives = 1146/1382 (82%), Gaps = 2/1382 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRK FGK PE+ ++P+LIEVQKASYD FLM+ R +EGLQA FK Sbjct: 1 MAQTLSFNGRRRVRKIFGKIPEVAEMPNLIEVQKASYDQFLMVEEPQGGRTDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG+AMLEFVSYEF+ PKFDV++C RDLTY+ PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPISDFSGSAMLEFVSYEFEHPKFDVEECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ++YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+H RIDRRRK+PV+S LMALGMD+EEILSTFY VYS+ Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVSSLLMALGMDAEEILSTFYTHSVYSR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G+ W P L G K ++D D+ E V+E+GKKLT LL+ L EKGVK + T Sbjct: 241 DGEGWRIPFQPETL-KGQKTIVDMIDADSNEVVVEAGKKLTPRLLRQLTEKGVKSIKATD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AEDIVN ETGE+++EAGD IDEK+L + + + +IP+L +D +N AYIRN Sbjct: 300 EDLYGSYLAEDIVNPETGEVFLEAGDEIDEKTLPVLAEAGLDEIPVLDIDHINVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R+DAL DIYRVMRPG+ T AE+MF LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAADKNESRQDALFDIYRVMRPGEPPTMESAEAMFQSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RK+DI+A++K LV LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLDAEDTVRVLRKDDILAVVKTLVSLRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DGKVT +VVYLSAMEE ++AQAN+ L EDGS +E + R AG+ ++ PRE Sbjct: 600 PYRKIKDGKVTEEVVYLSAMEEAKYHVAQANAELSEDGSLVDEFIVSRHAGDVMMTPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ID +D SP+Q+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 IDLMDVSPRQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E + S SGVDIYRL KFQRSNQNTC+NQRP Sbjct: 720 RDSGAAIAARRGGVVDQVDATRIVIRATEDM-EASRSGVDIYRLQKFQRSNQNTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+VS+DVFT Sbjct: 779 LVTVGDVINKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHI+EFEVMARDTKLGPEEITRDIPNVSEE L+N+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIDEFEVMARDTKLGPEEITRDIPNVSEEALRNLDEAGIVYIGAEVAPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL ++L G+ A++GPKGFKK ++ + I+EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLSDMLKGKAAIAGPKGFKKGAEVTEEAIAEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1019 WWMFAVEDEKLQGEIEALRAQYDDSKKLLESRFMDKVEKVQRGDELPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILPCEDMPFL+DGT VDIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRILPCEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GK+I +++ Y A G+I PLR ++ VIGTG E YDD S++R+AEQ Sbjct: 1139 LGWACAGMGKQIGEMLDAYNAGGEIQPLRDTIDSVIGTGPKGEPTKQYDDPSIVRLAEQT 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GV ++TPVFDGA E IN ML A L+ SGQS LYDG TGE FDRPVTVGYIYMLKLN Sbjct: 1199 RRGVSIATPVFDGAVEADINIMLEQAGLNVSGQSTLYDGRTGETFDRPVTVGYIYMLKLN 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++LE+++ A +E+PD Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELESAKIDGIADQDELPDA 1378 Query: 1381 NK 1382 + Sbjct: 1379 AE 1380 >gi|36333357|gb|AAP75736.1| RNA polymerase beta subunit [Bradyrhizobium japonicum] Length = 1372 Score = 1767 bits (4576), Expect = 0.0, Method: Composition-based stats. Identities = 904/1378 (65%), Positives = 1121/1378 (81%), Gaps = 6/1378 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPAGGRLDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG +MLEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGAK Sbjct: 60 SVFPISDFSGTSMLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAK 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS + ALG+D E ILSTFY KI+Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLMFALGLDGEAILSTFYKKILYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P A + G + L+D DTG+ V+E+GKKLT + ++EKG+K L ++ Sbjct: 240 TKEGWRVPFDA-NRFRGYSTINDLIDADTGKVVLEAGKKLTVRGARQMQEKGLKALRLSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEI+ EAG+ I +KS++ + +++P+L +D VN AYIRN Sbjct: 299 EELVGNYLAEDLVNPKTGEIHAEAGEEITDKSMKALNEQGYKELPLLDIDHVNVGAYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNMRL Sbjct: 359 TLSADKNMTREDALFDIYRVMRPGEPPTLDSAQAMFQSLFFDAERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD R +RKEDI+++IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 DLDAPDTQRTLRKEDILSVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DG+VT++VVYLSAMEE +AQAN LD G FTE+LV CR AGE + V +K Sbjct: 599 PYRKVKDGRVTDEVVYLSAMEEGRYTVAQANVPLDPKGRFTEDLVVCRHAGEVLPVTPDK 658 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VVA Sbjct: 659 VDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVA 718 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R+G+++Q+DA R+VIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQRP Sbjct: 719 RDSGAAIAARRSGVIDQIDATRVVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQRP 777 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDVFT Sbjct: 778 LVKVGDIVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFT 837 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITP Sbjct: 838 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITP 897 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++E Sbjct: 898 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIE 957 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y+RL E+L G+ ++GPKGFKK T ++ ++ EYP+SQ Sbjct: 958 REEIERLAKDRDDEQAILDRNVYNRLAELLEGRQGIAGPKGFKKDTKITRAVLEEYPKSQ 1017 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1018 WWLFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1077 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1078 KRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1137 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC GLGK+I ++ Y + DI PL+ L+KV G E I +D+ ++ + Sbjct: 1138 LGWACAGLGKRIGQTVDAYLSKQDIKPLKETLKKVYGED---ETIKTLNDNELIELGHNL 1194 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 GVP++TPVFDGA E I ML++A LD SGQS +YDG TG+ FDR VTVGYIYMLKL+ Sbjct: 1195 SRGVPIATPVFDGAKEADIEEMLKLAGLDASGQSTVYDGRTGDAFDRKVTVGYIYMLKLH 1254 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1255 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1314 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ + E Sbjct: 1315 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKVGPAPTSEAAE 1372 >gi|146340046|ref|YP_001205094.1| DNA-directed RNA polymerase subunit beta [Bradyrhizobium sp. ORS278] gi|158514299|sp|A4YSI1|RPOB_BRASO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|146192852|emb|CAL76857.1| RNA polymerase, beta subunit [Bradyrhizobium sp. ORS278] Length = 1372 Score = 1766 bits (4574), Expect = 0.0, Method: Composition-based stats. Identities = 905/1378 (65%), Positives = 1120/1378 (81%), Gaps = 6/1378 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ RP+EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPTGGRPDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG +MLEFV YEF+PPK+DVD+C R +T+A PLK+TLRLIVFD+DE TGAK Sbjct: 60 SVFPISDFSGTSMLEFVRYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAK 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D E+IL+TFY K++Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVFARIDRRRKLPVTSLMFALGLDGEQILATFYKKLIYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P A + G + L+D DTG+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 IKEGWRVPFDA-NRFRGYSTVNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRMSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEIY EAG+ I +K + + +D+P+L +D VN YIRN Sbjct: 299 EELLGNYIAEDLVNPKTGEIYAEAGEEITDKLFKVLNEQGYKDLPLLDIDHVNVGPYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNMRL Sbjct: 359 TLSADKNMTREDALFDIYRVMRPGEPPTLDSAQAMFQSLFFDAERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD PD R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 ELDAPDTQRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DG+VT++VVYLSAMEE +AQAN LD G FTE+LV CR AGE + + +K Sbjct: 599 PYRKVKDGRVTDEVVYLSAMEEGRYRVAQANVPLDAKGRFTEDLVVCRHAGEVVPMTPDK 658 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VVA Sbjct: 659 VDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVA 718 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R+G+++Q+DA R+VIR+ E LDP+ SGVDIYRLMKFQRSNQ+TC+NQRP Sbjct: 719 RDSGAAIAARRSGVIDQIDATRVVIRATED-LDPTKSGVDIYRLMKFQRSNQSTCINQRP 777 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDVFT Sbjct: 778 LVKVGDIVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFT 837 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITP Sbjct: 838 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITP 897 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++E Sbjct: 898 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIE 957 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+YSRL ++L G+ +SGPKGFKK T ++ ++ EYP+SQ Sbjct: 958 REEIERLAKDRDDEQAILDRNVYSRLADMLDGRQGISGPKGFKKDTKITRAVLDEYPKSQ 1017 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1018 WWLFAASNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1077 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1078 KRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1137 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC GLGK+I ++ Y + D+ PL+ L+++ G E I +D+ +L + Sbjct: 1138 LGWACAGLGKRIAQTVDAYLSKQDVKPLKETLKRIYGED---ETIKTLNDNELLELGHNL 1194 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 GVP++TPVFDGA E I ML++A +D SGQS +YDG TG+PFDR VTVGYIYMLKL+ Sbjct: 1195 SRGVPIATPVFDGAKESDIEEMLKLAGMDASGQSTVYDGRTGDPFDRKVTVGYIYMLKLH 1254 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1255 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1314 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ + E Sbjct: 1315 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKLGPAPTSEAAE 1372 >gi|71390282|gb|AAZ31528.1| DNA-dependent RNA polymerase beta chain [Brucella suis] gi|71390288|gb|AAZ31531.1| DNA-dependent RNA polymerase beta chain [Brucella canis] Length = 1364 Score = 1766 bits (4574), Expect = 0.0, Method: Composition-based stats. Identities = 941/1365 (68%), Positives = 1131/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE IAQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSIAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|36333341|gb|AAP75728.1| RNA polymerase beta subunit [Afipia broomeae ATCC 49717] Length = 1372 Score = 1766 bits (4573), Expect = 0.0, Method: Composition-based stats. Identities = 907/1378 (65%), Positives = 1116/1378 (80%), Gaps = 6/1378 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPTGGRLDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSG + LEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGAK Sbjct: 60 SVFPINDFSGTSQLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAK 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKIQYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 D W P A D G + L+D D+G+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 IKDGWRVPFVA-DRFRGYSTINDLIDADSGKVVLEAGKKLTVRSARQLQEKGLKALRLSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G+Y+AED+VN +TGEI+ EAG+ I EK L+ + +++P+L +D VN YIRN Sbjct: 299 DELVGMYLAEDLVNPKTGEIHAEAGEEITEKLLKALNEQGYKELPLLDIDHVNIGPYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFDS++YDLS VGRVKMNMRL Sbjct: 359 TLAADKNMTREDALFDIYRVMRPGEPPTLDSAQAMFQSLFFDSERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD PD +R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 ELDAPDTMRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DG+VT+DVVYLSAMEE +AQAN LD G FT++LV CR AGE + + +K Sbjct: 599 PYRKVKDGRVTDDVVYLSAMEEGRYRVAQANVPLDNKGRFTDDLVICRHAGEVLQITPDK 658 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VVA Sbjct: 659 VDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVA 718 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQRP Sbjct: 719 RDSGAAIAARRTGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQRP 777 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGD+VR+ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVFT Sbjct: 778 LVKVGDQVRKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFT 837 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDIL GKITP Sbjct: 838 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILCGKITP 897 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++E Sbjct: 898 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIE 957 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN++ RL ++L + ++GPKGFKK T ++ ++ EYP+SQ Sbjct: 958 REEIERLAKDRDDEQAILDRNVFGRLADLLENRQGIAGPKGFKKDTKITRAVLEEYPKSQ 1017 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1018 WWQFASPNDKLMAEIEAMRXQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1077 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1078 KRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1137 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC GLGK+I Y + D+ PL+ L+KV G E I +D +L +A Sbjct: 1138 LGWACAGLGKRIGQAAEAYWSKQDLKPLKETLKKVYGDD---ETIKSLNDSELLELARNL 1194 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA E+ I ML +A +++SGQS++YDG TG+ FDR VTVGYIYMLKL+ Sbjct: 1195 KPGVPIATPVFDGAKEKDIEDMLELAGMNKSGQSVVYDGRTGDQFDRNVTVGYIYMLKLH 1254 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1255 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1314 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ + E Sbjct: 1315 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKLGPTPTSEAAE 1372 >gi|46982188|gb|AAT08134.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] gi|71390276|gb|AAZ31525.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] Length = 1364 Score = 1765 bits (4572), Expect = 0.0, Method: Composition-based stats. Identities = 940/1365 (68%), Positives = 1131/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTIGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|71390300|gb|AAZ31537.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] Length = 1364 Score = 1765 bits (4571), Expect = 0.0, Method: Composition-based stats. Identities = 940/1365 (68%), Positives = 1131/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEIDVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|71390290|gb|AAZ31532.1| DNA-dependent RNA polymerase beta chain [Brucella neotomae] Length = 1364 Score = 1765 bits (4571), Expect = 0.0, Method: Composition-based stats. Identities = 940/1365 (68%), Positives = 1131/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRLSALG G Sbjct: 480 ERVSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|49089813|gb|AAT51864.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] gi|49089815|gb|AAT51865.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] gi|71390270|gb|AAZ31522.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] gi|71390272|gb|AAZ31523.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] gi|71390278|gb|AAZ31526.1| DNA-dependent RNA polymerase beta chain [Brucella suis ATCC 23445] gi|71390284|gb|AAZ31529.1| DNA-dependent RNA polymerase beta chain [Brucella suis] gi|71390286|gb|AAZ31530.1| DNA-dependent RNA polymerase beta chain [Brucella ovis] gi|71390292|gb|AAZ31533.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] gi|71390294|gb|AAZ31534.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] gi|71390296|gb|AAZ31535.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] gi|71390298|gb|AAZ31536.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] gi|71390302|gb|AAZ31538.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] gi|71390308|gb|AAZ31541.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] Length = 1364 Score = 1765 bits (4571), Expect = 0.0, Method: Composition-based stats. Identities = 940/1365 (68%), Positives = 1131/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|86357297|ref|YP_469189.1| DNA-directed RNA polymerase subunit beta [Rhizobium etli CFN 42] gi|123512272|sp|Q2K9M4|RPOB_RHIEC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|86281399|gb|ABC90462.1| DNA-directed RNA polymerase beta chain protein [Rhizobium etli CFN 42] Length = 1379 Score = 1765 bits (4571), Expect = 0.0, Method: Composition-based stats. Identities = 958/1375 (69%), Positives = 1155/1375 (84%), Gaps = 2/1375 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPIT FSGA+MLEFVSYEF+PPKFDVD+C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQS+YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS LMALGMD EEIL TFY K +Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYKR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G+ W P L GAK + +VD DTGE V+E+GKKLT LL+ L +KG+K L Sbjct: 241 DGEGWRIPFKPETL-KGAKAITEMVDADTGEVVVEAGKKLTPRLLRQLSDKGLKALKAGD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AEDIVN TGEIY+EAGD IDEK+L I + +IP+L +D +N AYIRN Sbjct: 300 DDLYGNYLAEDIVNYSTGEIYLEAGDEIDEKTLAVILANGFDEIPVLGIDHINVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R+DAL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLSADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +L D VR +RK+DI+A++K+LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLSVEDTVRTLRKDDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR++ DGKVTNDV+YLSAMEE Y+AQAN+ L+ DGSF +E V CR AGE +L PR+ Sbjct: 600 PYRRIVDGKVTNDVLYLSAMEEAKYYVAQANAELNADGSFVDEFVVCRHAGEVMLAPRDS 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++ +D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGME VVA Sbjct: 660 MNLMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E L+ SGVDIYRL KFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIGARRGGVVDQVDATRIVIRATED-LEAGKSGVDIYRLQKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD V R DI+ADGPSTDLGDLALGRN LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 779 LVTVGDVVNRGDILADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVADDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GT+V+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTIVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL+++L GQ +++GPKGFKK T LS+ ++SEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLIDMLRGQVSIAGPKGFKKGTELSNAVVSEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEKVQ +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VD+VLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+G++I LI YKANG+I PLR + V+G G E++ ++DD+SVLR+A+QW Sbjct: 1139 LGWACAGMGRQIGELIEAYKANGNIEPLRKTIGDVVGAGPKAEQVHEFDDESVLRLADQW 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA+E +N MLR+A L ++GQS LYDG TGE FDR VTVGYIYMLKLN Sbjct: 1199 KRGVSIATPVFDGANEGDVNDMLRLAGLKDTGQSTLYDGRTGEQFDRQVTVGYIYMLKLN 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LEN++ + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENTKLDEAQATQ 1373 >gi|71390304|gb|AAZ31539.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] gi|71390306|gb|AAZ31540.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] gi|71390310|gb|AAZ31542.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] Length = 1364 Score = 1764 bits (4570), Expect = 0.0, Method: Composition-based stats. Identities = 939/1365 (68%), Positives = 1131/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTG+ V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGKVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|71390280|gb|AAZ31527.1| DNA-dependent RNA polymerase beta chain [Brucella suis] Length = 1364 Score = 1764 bits (4570), Expect = 0.0, Method: Composition-based stats. Identities = 939/1365 (68%), Positives = 1131/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDV++C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVNECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|154253170|ref|YP_001413994.1| DNA-directed RNA polymerase subunit beta [Parvibaculum lavamentivorans DS-1] gi|171769622|sp|A7HWQ4|RPOB_PARL1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|154157120|gb|ABS64337.1| DNA-directed RNA polymerase, beta subunit [Parvibaculum lavamentivorans DS-1] Length = 1362 Score = 1764 bits (4570), Expect = 0.0, Method: Composition-based stats. Identities = 876/1363 (64%), Positives = 1084/1363 (79%), Gaps = 5/1363 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G RVRK FG P+I ++P+LIEVQK SYD FL ++ R +GLQA FKSV Sbjct: 1 MTQSFTGRKRVRKVFGHIPQIAEMPNLIEVQKYSYDQFLQVDEPTGGREEQGLQAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+ FS ++ LEFV+YEF+ PK+DV++C R +T+A PLK+TLRLIVF+VDE TGAKS+ Sbjct: 61 FPISDFSESSTLEFVNYEFETPKYDVEECQQRGMTFAAPLKVTLRLIVFEVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT++GTFVI G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYMGDMPLMTENGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KDI+ VRIDRRRK+PVT+ L ALG+DSEEILSTFY + +++ Sbjct: 181 RVIPYRGSWLDFEFDAKDIVFVRIDRRRKLPVTTLLYALGLDSEEILSTFYNSVTFTKVK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W P +A D GAK L+D TG+ V+E+G+K+T L K L E+G+K L + + Sbjct: 241 QGWRVPFNA-DRYRGAKPERDLIDAKTGKVVVEAGRKVTPRLAKKLAEEGLKELLVQDED 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + Y+A++IVN ETGEI+ EAGD I + LE + + DI L +D VN A+IRNTL Sbjct: 300 IHTRYLAQEIVNMETGEIFAEAGDEITPELLEALVEAGHTDIITLDIDHVNTGAFIRNTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DK +R+ AL+DIYRVMRPG+ T AE++F LFFD+++YDLS VGRVKMNMRL+L Sbjct: 360 AVDKCTNREQALIDIYRVMRPGEPPTADTAEALFKSLFFDAERYDLSAVGRVKMNMRLDL 419 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D D VR +RKEDI+A+IK LV LR+GKG IDDIDNLGNRRVRSVGE+++NQYR+GLLRM Sbjct: 420 DVSDTVRVLRKEDILAVIKTLVGLRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLRM 479 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+SSVDID+VMP DLINAKP +AV EFF SSQLSQ + N LS ITH RRLS Sbjct: 480 ERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS 539 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PY Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPY 599 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V GK+ +D+VYLSAMEE IAQAN ++ + G ELV CR G+ +VP +++D Sbjct: 600 RRVKGGKLADDIVYLSAMEESRYRIAQANVAIGKKGEIEGELVNCRIDGDFEMVPPDQVD 659 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL+++EAP VGTGME VVA+ Sbjct: 660 FVDVSPKQIVSVAAALIPFLENDDANRALMGSNMQRQAVPLIRSEAPLVGTGMEEVVARD 719 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGAAI A+R G+V+QVDA RIVIR+ E D S SGVDIY L KFQRSNQNTC+NQRPLV Sbjct: 720 SGAAIGARRTGVVDQVDATRIVIRATEEV-DSSKSGVDIYNLRKFQRSNQNTCINQRPLV 778 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +VGD+V++ DIIADGPST+LGDLALGRN+LVAFMPW+GYNFEDS+LISER+V +DVFTSI Sbjct: 779 RVGDQVKKGDIIADGPSTELGDLALGRNVLVAFMPWNGYNFEDSILISERIVRDDVFTSI 838 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFEVMARDTKLGPEEITRDIPNV EE LKN+DE GI+ +GAEVNPGDIL GKITPKG Sbjct: 839 HIEEFEVMARDTKLGPEEITRDIPNVGEEALKNLDEAGIVYIGAEVNPGDILCGKITPKG 898 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV GTVV+VR+FNRHGIDK+ER++++ERE Sbjct: 899 ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVQGTVVEVRVFNRHGIDKDERAMAIERE 958 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE LA+D+DDE ILDRN+Y RL EIL G+ SGPKG + ++ + + QWW Sbjct: 959 EIERLAKDRDDEFGILDRNVYGRLSEILLGKQIASGPKGMEADAKVTQANLDDLSHGQWW 1018 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 Q A+++EK Q +E+LK QY+ SK LE RF +K++K+Q GD++PPGV+++VKVFVA+KR Sbjct: 1019 QIALKNEKAQSEIEALKKQYDESKERLEARFADKVDKLQRGDELPPGVMKMVKVFVAVKR 1078 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q+GDKMAGRHGNKG++SRI+P EDMP+L DG PVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1079 KLQTGDKMAGRHGNKGVISRIVPMEDMPYLDDGQPVDIVLNPLGVPSRMNVGQILETHLG 1138 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WAC GLGKKI+ ++ Y L+ ++++ G ++ D++ ++ +A + Sbjct: 1139 WACAGLGKKIEVALDAYHRENKPKELKDLVKQIYGDD---PTVASLDEEQLVEMAGNLTN 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E I ML +A LD SGQ L+DG TGEPFDR VTVGYIYMLKL+H+ Sbjct: 1196 GVPIATPVFDGAREPEIVEMLELAGLDRSGQVTLHDGRTGEPFDRKVTVGYIYMLKLHHL 1255 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1256 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L Sbjct: 1316 AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELLT 1358 >gi|52082903|gb|AAU26031.1| RNA polymerase beta subunit [Afipia sp. SP3302452] Length = 1372 Score = 1764 bits (4568), Expect = 0.0, Method: Composition-based stats. Identities = 905/1378 (65%), Positives = 1117/1378 (81%), Gaps = 6/1378 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPQGGRLDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSG + LEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGAK Sbjct: 60 SVFPINDFSGTSQLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAK 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKIQYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P A D G + L+D D+G+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 IKEGWRVPFVA-DRFRGYSTINDLIDADSGKVVLEAGKKLTVRTARQLQEKGLKALRLSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G+Y+AED+VN +TGEI+ EAG+ I EK L+ + +++P+L +D VN YIRN Sbjct: 299 DELVGMYLAEDLVNPKTGEIHAEAGEEITEKLLKALNEQGYKELPLLDIDHVNIGPYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNMRL Sbjct: 359 TLSADKNMTREDALFDIYRVMRPGEPPTLDSAQAMFQSLFFDAERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD PD +R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 ELDAPDTMRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DG+VT+DVVYLSAMEE +AQAN LD G FT++LV CR AGE + +P ++ Sbjct: 599 PYRKVKDGRVTDDVVYLSAMEEGRYRVAQANVPLDNKGRFTDDLVICRHAGEVLQLPPDR 658 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VVA Sbjct: 659 VDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVA 718 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQRP Sbjct: 719 RDSGAAIAARRTGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQRP 777 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGD+V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVFT Sbjct: 778 LVKVGDQVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFT 837 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDIL GKITP Sbjct: 838 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILCGKITP 897 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++E Sbjct: 898 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIE 957 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL ++L + ++GPKGFKK T ++ ++ EYP+SQ Sbjct: 958 REEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKGFKKDTKITRAVLEEYPKSQ 1017 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1018 WWQFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1077 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1078 KRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1137 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC GLGK+I Y + D+ PL+ L+KV G E I +D +L +A Sbjct: 1138 LGWACAGLGKRIGQAAEAYWSKQDLKPLKETLKKVYGDD---ETIKTLNDQELLELARNL 1194 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA E+ I ML +A +++SGQS++YDG TG+ FDR VTVGYIYMLKL+ Sbjct: 1195 KPGVPIATPVFDGAKEKDIEDMLDLAGMNKSGQSVVYDGRTGDQFDRNVTVGYIYMLKLH 1254 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1255 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1314 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ + E Sbjct: 1315 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKLGPTPTSEAAE 1372 >gi|46982198|gb|AAT08139.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] Length = 1364 Score = 1764 bits (4568), Expect = 0.0, Method: Composition-based stats. Identities = 940/1365 (68%), Positives = 1130/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ N LS ITH RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMNQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETLEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTIGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|46982196|gb|AAT08138.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] Length = 1364 Score = 1763 bits (4567), Expect = 0.0, Method: Composition-based stats. Identities = 940/1365 (68%), Positives = 1130/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ N LS ITH RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMGQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETLEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTIGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|46982204|gb|AAT08142.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] Length = 1364 Score = 1763 bits (4567), Expect = 0.0, Method: Composition-based stats. Identities = 939/1365 (68%), Positives = 1130/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRL ALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLLALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTIGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|154247292|ref|YP_001418250.1| DNA-directed RNA polymerase subunit beta [Xanthobacter autotrophicus Py2] gi|226699461|sp|A7IKQ0|RPOB_XANP2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|154161377|gb|ABS68593.1| DNA-directed RNA polymerase, beta subunit [Xanthobacter autotrophicus Py2] Length = 1358 Score = 1763 bits (4567), Expect = 0.0, Method: Composition-based stats. Identities = 903/1364 (66%), Positives = 1114/1364 (81%), Gaps = 6/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RKFFGK E+ ++P+LIEVQKASYD FL + R ++GLQA FKSV Sbjct: 1 MAQTFTGRKRIRKFFGKIKEVAEMPNLIEVQKASYDQFLQIEEPKGGRDDDGLQAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+ FSGA+MLEFV YEF+PPK+DVD+C R +T+A PLK+TLRLIVFDVD TGAKS+ Sbjct: 61 FPISDFSGASMLEFVRYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPETGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +Y GD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYTGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+DIEFD+KDI+ RIDRRRK+PVTS L ALG+D+EEILSTFY KI +++ Sbjct: 181 RIIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLLYALGLDNEEILSTFYEKIPFTREK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W P M G K + L+D DTGE V+E+GKKLT + L EKG+K L I+ + Sbjct: 241 GGWRMPFDP-KRMKGYKAVADLIDADTGEVVLEAGKKLTVRAGRQLAEKGLKALKISDEE 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y+AED+V+ +GEI+ EAG+ I EK+L+ + + +IP+L +D VN AYIRNTL Sbjct: 300 MIGQYIAEDLVDLTSGEIHAEAGEEITEKTLKLLEETGYNEIPVLDIDHVNTGAYIRNTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN R+DAL DIYRVMRPG+ T A++MF+ LFFDS++YDLS VGRVKMNMRL+L Sbjct: 360 TADKNVTREDALFDIYRVMRPGEPPTLDSAQAMFHSLFFDSERYDLSAVGRVKMNMRLDL 419 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D PD VR +R++DI+++I+ LV+LR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLLRM Sbjct: 420 DCPDTVRVLRRDDILSVIRTLVELRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRM 479 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+SSVDID+VMPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RRLS Sbjct: 480 ERAIKERMSSVDIDTVMPQDLINAKPVAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS 539 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE PY Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIEAPY 599 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V D KVT++VVYLSAMEE Y+AQAN LD+DG F E+L+ CR AG+ +LV +++D Sbjct: 600 RRVVDSKVTDEVVYLSAMEEGKYYVAQANIPLDKDGRFEEDLIVCRHAGDVLLVAPDRVD 659 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++++AP VGTGME+VVA+ Sbjct: 660 FMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRSQAPLVGTGMEAVVARD 719 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGAAI A+R G+++QVDA RIVIR+ E DPS SGVDIYRLMKFQRSNQ+TC+NQRPLV Sbjct: 720 SGAAIAARRTGVIDQVDATRIVIRATEEA-DPSKSGVDIYRLMKFQRSNQSTCINQRPLV 778 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +VGD+V++ DIIADGPST+LG+LALGRN+LVAFMPW+GYNFEDS+L+SE + EDVFTSI Sbjct: 779 RVGDQVKKGDIIADGPSTELGELALGRNVLVAFMPWNGYNFEDSILLSENIAKEDVFTSI 838 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFE MARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITPKG Sbjct: 839 HIEEFEAMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKG 898 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P G +GT+V+VR+FNRHG+DK+ER++++ERE Sbjct: 899 ESPMTPEEKLLRAIFGEKAADVRDTSLRLPPGTTGTIVEVRVFNRHGVDKDERALAIERE 958 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE LA+D+DDEQ ILDRN+Y RL+EIL G+ A++GPKGF+K TV++ ++++EYPRSQWW Sbjct: 959 EIERLAKDRDDEQAILDRNVYGRLIEILDGKTAIAGPKGFRKETVVTREILTEYPRSQWW 1018 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 FAV D+ + +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+KR Sbjct: 1019 LFAVADDAIMAELEAIRAQYDDSKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKR 1078 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1079 KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTNVDIVLNPLGVPSRMNVGQILETHLG 1138 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WAC GLG+++ + + Y D+ PLR LE + G ++I D + + E + Sbjct: 1139 WACAGLGRQVAAAMEAYYGKQDLKPLRDRLETIYG----KDEIEQLKDGELPELGENLRK 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E I L A LD SGQS LYDG TGEPFDR VTVGYIYMLKL+H+ Sbjct: 1195 GVPMATPVFDGAHEADIEQQLEKAGLDASGQSTLYDGRTGEPFDRKVTVGYIYMLKLHHL 1254 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1255 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT+VYE+IV G DTFE+G PESFNVLVKEM++LGL++DLENS Sbjct: 1315 AGRTKVYEAIVRGEDTFESGIPESFNVLVKEMRSLGLNVDLENS 1358 >gi|71390274|gb|AAZ31524.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] Length = 1364 Score = 1763 bits (4566), Expect = 0.0, Method: Composition-based stats. Identities = 939/1365 (68%), Positives = 1131/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQ N LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQVNVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL++++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLVDMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|209548927|ref|YP_002280844.1| DNA-directed RNA polymerase subunit beta [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226699436|sp|B5ZYS7|RPOB_RHILW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|209534683|gb|ACI54618.1| DNA-directed RNA polymerase, beta subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1379 Score = 1763 bits (4565), Expect = 0.0, Method: Composition-based stats. Identities = 957/1370 (69%), Positives = 1154/1370 (84%), Gaps = 2/1370 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPIT FSGA+MLEFVSYEF+PPKFDVD+C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQS+YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS LMALGMD EEIL TFY K +Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYKR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G+ W P L GAK + +VD DTGE V+E+GKKLT LL+ L +KG+K L Sbjct: 241 DGEGWRIPFKPETL-KGAKAITEMVDADTGEVVVEAGKKLTPRLLRQLSDKGLKALKAAD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+A DIVN TGEIY+EAGD IDEK+L I + +IP+L +D +N AYIRN Sbjct: 300 DDLYGNYLAGDIVNYSTGEIYLEAGDEIDEKTLGIILANGFDEIPVLGIDHINVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R+DAL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLSADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +L D VR +RK+DI+A++++LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLTVEDTVRILRKDDILAVVRMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR++ DG+VT+DV+YLSAMEE Y+AQAN+ ++ DGSF +E V CR AGE +L PR+ Sbjct: 600 PYRRIVDGRVTSDVLYLSAMEEAKYYVAQANAEMNADGSFVDEFVVCRHAGEVMLAPRDS 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++ +D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGME VVA Sbjct: 660 MNLMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E L+ SGVDIYRL KFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIGARRGGVVDQVDATRIVIRATED-LEAGKSGVDIYRLQKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGDEV R DI+ADGPSTDLGDLALGRN LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 779 LVTVGDEVNRGDILADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVADDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GT+V+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTIVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL+E+L GQ +++GPKGFKK T LS+ ++SEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLIEMLRGQASIAGPKGFKKGTELSNAVVSEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEKVQ +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VD+VLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+G++I LI+ YKANG+I PLR + V+G G E++ D+DDDSVLR+A+QW Sbjct: 1139 LGWACAGMGRQIGELIDAYKANGNIEPLRKTIGDVVGDGPKAEQVQDFDDDSVLRLADQW 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA+E +N MLR+A L ++GQS LYDG TGE FDR VTVGYIYMLKLN Sbjct: 1199 KRGVSIATPVFDGANEADVNDMLRLAGLKDTGQSTLYDGRTGEQFDRQVTVGYIYMLKLN 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LEN++ Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENTKLDE 1368 >gi|46982202|gb|AAT08141.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] Length = 1364 Score = 1762 bits (4564), Expect = 0.0, Method: Composition-based stats. Identities = 939/1365 (68%), Positives = 1131/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS IT+ RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITYKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTIGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|46982200|gb|AAT08140.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] Length = 1364 Score = 1762 bits (4564), Expect = 0.0, Method: Composition-based stats. Identities = 939/1365 (68%), Positives = 1130/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS IT RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITLKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTIGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|46982192|gb|AAT08136.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] Length = 1364 Score = 1762 bits (4564), Expect = 0.0, Method: Composition-based stats. Identities = 940/1365 (68%), Positives = 1130/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ N LS ITH RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMYQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTIGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|49089817|gb|AAT51866.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] Length = 1364 Score = 1762 bits (4563), Expect = 0.0, Method: Composition-based stats. Identities = 939/1365 (68%), Positives = 1131/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS IT+ RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITYKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|46982194|gb|AAT08137.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] Length = 1364 Score = 1762 bits (4563), Expect = 0.0, Method: Composition-based stats. Identities = 939/1365 (68%), Positives = 1129/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ N LS ITH R LSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMNQTNPLSEITHKRSLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTIGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|36333353|gb|AAP75734.1| RNA polymerase beta subunit [Afipia sp. B-91-007287] Length = 1372 Score = 1762 bits (4563), Expect = 0.0, Method: Composition-based stats. Identities = 908/1378 (65%), Positives = 1115/1378 (80%), Gaps = 6/1378 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG+ E+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQQ-TFTGRKRVRKFFGQIKEVAEMPNLIEVQKASYDQFLMVEEPAGGRPDEGLQAVFK 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FS +MLEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGA+ Sbjct: 60 SVFPISDFSNTSMLEFVRYEFEAPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAR 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI+Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMYALGLDGEEILSTFYKKILYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P AA G + LVD DTG+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 TKEGWRVPFDAA-RFRGYTTINDLVDADTGKVVLEAGKKLTVRTARQLQEKGLKALRMSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G ++AED+VN +TGEI+ EAGD I EKSL+ + +++PIL +D VN YIRN Sbjct: 299 EELVGNFLAEDLVNPKTGEIHAEAGDEITEKSLKVLNEIGYKELPILDIDHVNVGPYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFDS++YDLS VGRVKMNMRL Sbjct: 359 TLSADKNMTREDALFDIYRVMRPGEPPTLDSAQNMFQSLFFDSERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD PD R +R+EDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 ELDAPDTHRTLRREDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DG+VT++VVYLSAMEE Y+AQAN LD G FTE+LV R AG+ + V +K Sbjct: 599 PYRKVKDGRVTDEVVYLSAMEEGRHYVAQANVPLDAKGRFTEDLVVARHAGDVLQVTPDK 658 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VVA Sbjct: 659 VDYMDVSPKQTVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVA 718 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R+G+++Q+DA R+VIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQRP Sbjct: 719 RDSGAAIAARRSGVIDQIDATRVVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQRP 777 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDVFT Sbjct: 778 LVKVGDVVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFT 837 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITP Sbjct: 838 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITP 897 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++E Sbjct: 898 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIE 957 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL E+L ++ ++GPKGFKK T ++ ++ EYPRSQ Sbjct: 958 REEIERLAKDRDDEQAILDRNVYGRLAELLNNRDGLAGPKGFKKDTRITKAVLEEYPRSQ 1017 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1018 WWLFATSNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1077 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1078 KRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1137 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC GLG++I ++ Y + D PLR L+KV G E I + ++ + Sbjct: 1138 LGWACAGLGRRIAQTVDAYYSKQDSKPLREMLKKVYGED---ETIKSLGEGELVELGHNL 1194 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 GVP++TPVFDGA E I ML +A +D SGQS +YDG TG+PFDR VTVGYIYMLKL+ Sbjct: 1195 SRGVPIATPVFDGAKETDIEEMLTLAGVDGSGQSTVYDGRTGDPFDRKVTVGYIYMLKLH 1254 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1255 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1314 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ ++ E Sbjct: 1315 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKLGSTPPAEAAD 1372 >gi|36333355|gb|AAP75735.1| RNA polymerase beta subunit [Afipia genosp. 2] Length = 1373 Score = 1761 bits (4562), Expect = 0.0, Method: Composition-based stats. Identities = 906/1367 (66%), Positives = 1111/1367 (81%), Gaps = 6/1367 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG+ E+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQQ-TFTGRKRVRKFFGQIKEVAEMPNLIEVQKASYDQFLMVEEPAGGRPDEGLQAVFK 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FS +MLEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGA+ Sbjct: 60 SVFPISDFSNTSMLEFVRYEFEAPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAR 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI+Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMYALGLDGEEILSTFYKKILYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P AA G + L+D DTG+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 TKEGWRVPFDAA-RFRGYTTINDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRMSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G ++AED+VN +TGEI+ EAGD I EKSL+ + +++PIL +D VN YIRN Sbjct: 299 EELVGNFLAEDLVNPKTGEIHAEAGDEITEKSLKALNEIGYKELPILDIDHVNVGPYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFDS++YDLS VGRVKMNMRL Sbjct: 359 TLAADKNMTREDALFDIYRVMRPGEPPTLESAQNMFQSLFFDSERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD PD R +R+EDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 ELDAPDTHRTLRREDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DG+VT++VVYLSAMEE Y+AQAN LD G FTE+LV R AG+ + V +K Sbjct: 599 PYRKVKDGRVTDEVVYLSAMEEGRHYVAQANVPLDAKGRFTEDLVVARHAGDVLQVTPDK 658 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VVA Sbjct: 659 VDYMDVSPKQTVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVA 718 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R+G+++Q+DA R+VIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQRP Sbjct: 719 RDSGAAIAARRSGVIDQIDATRVVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQRP 777 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDVFT Sbjct: 778 LVKVGDVVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFT 837 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITP Sbjct: 838 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITP 897 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++E Sbjct: 898 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIE 957 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL E+L + ++GPKGFKK T ++ ++ EYPRSQ Sbjct: 958 REEIERLAKDRDDEQAILDRNVYGRLAELLNNREGIAGPKGFKKDTRITKAVLEEYPRSQ 1017 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1018 WWLFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1077 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1078 KRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1137 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC GLG++I ++ Y + D PLR L+KV G E I + ++ + Sbjct: 1138 LGWACAGLGRRIAQTVDAYYSKQDSKPLREMLKKVYGED---ETIKSLGEGELVELGHNL 1194 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 GVP++TPVFDGA E I ML +A +D SGQS +YDG TG+PFDR VTVGYIYMLKL+ Sbjct: 1195 SRGVPIATPVFDGAKETDIEEMLTLAGVDGSGQSTVYDGRTGDPFDRKVTVGYIYMLKLH 1254 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1255 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1314 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ Sbjct: 1315 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSK 1361 >gi|46982206|gb|AAT08143.1| DNA-dependent RNA polymerase beta chain [Brucella abortus] Length = 1364 Score = 1761 bits (4562), Expect = 0.0, Method: Composition-based stats. Identities = 940/1365 (68%), Positives = 1130/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ N LS ITH RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMYQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|36333345|gb|AAP75730.1| RNA polymerase beta subunit [Afipia felis ATCC 53690] Length = 1378 Score = 1761 bits (4562), Expect = 0.0, Method: Composition-based stats. Identities = 906/1383 (65%), Positives = 1111/1383 (80%), Gaps = 10/1383 (0%) Query: 1 MAKGV-VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA F Sbjct: 1 MAQSQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPQGGRLDEGLQAVF 60 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 +SVFPI FSG + LEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGA Sbjct: 61 RSVFPINDFSGTSQLEFVRYEFEAPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGA 120 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 KS+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL Sbjct: 121 KSVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLL 180 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS 239 +A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS ++ALG+D EEILSTFY KI Y Sbjct: 181 FAARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMLALGLDGEEILSTFYKKIQYK 240 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 + D W P SA D G + L+D D+G+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 241 RTKDGWRVPFSA-DRFRGYSAVTDLIDADSGKVVLEAGKKLTVRQARLLQEKGLKALRMS 299 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 L G ++AED+VN +TGEIY EAG+ I EKSL+ + +D+PIL +D VN YIR Sbjct: 300 DADLVGTFLAEDLVNPKTGEIYAEAGEEITEKSLKALIEQGYKDLPILDIDHVNVGPYIR 359 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 NTL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNMR Sbjct: 360 NTLSADKNMTREDALFDIYRVMRPGEPPTLDSAQNMFQSLFFDAERYDLSAVGRVKMNMR 419 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 L LD PD R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GL Sbjct: 420 LELDAPDTHRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGL 479 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 LRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH R Sbjct: 480 LRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKR 539 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+E Sbjct: 540 RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVE 599 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 TPYRKV DG+VT++VVYLSAMEE +AQAN LD G FTE+LV CR AGE I + + Sbjct: 600 TPYRKVKDGRVTDEVVYLSAMEEGRYRVAQANVPLDNKGRFTEDLVICRHAGEVIQLTPD 659 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 ++D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VV Sbjct: 660 RVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVV 719 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A+ SGAAI A+R G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMKFQRSNQ+TC+NQR Sbjct: 720 ARDSGAAIAARRTGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKFQRSNQSTCINQR 778 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 PLVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVF Sbjct: 779 PLVKVGDVVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVF 838 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKIT Sbjct: 839 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKIT 898 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++ Sbjct: 899 PKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAI 958 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ERE+IE LA+D+DDEQ ILDRN+Y RL ++L + ++GPKGFKK T ++ ++ EYPRS Sbjct: 959 EREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKGFKKDTKITRAVLEEYPRS 1018 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 QWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA Sbjct: 1019 QWWAFASPNDKLMGEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVA 1078 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ET Sbjct: 1079 VKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILET 1138 Query: 1140 HLGWACVGLGKKI----KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 HLGWAC GLGK+I + + D L+ L++V G E + +D+ +L Sbjct: 1139 HLGWACAGLGKRIGQAVDAYLAKGDGKSDTKALKGTLKEVYGDD---EVVKSLNDNELLE 1195 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 + K GVP++TPVFDGA E I ML +A +D+SGQS +YDG TG+ FDR VTVGYIY Sbjct: 1196 LGRNLKPGVPIATPVFDGAKEADIEQMLELAGVDKSGQSTVYDGRTGDQFDRKVTVGYIY 1255 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEML Sbjct: 1256 MLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1315 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 T+KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ + E Sbjct: 1316 TVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKMGPAPTSE 1375 Query: 1376 EIP 1378 Sbjct: 1376 AAE 1378 >gi|241204157|ref|YP_002975253.1| DNA-directed RNA polymerase subunit beta [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858047|gb|ACS55714.1| DNA-directed RNA polymerase, beta subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1379 Score = 1761 bits (4562), Expect = 0.0, Method: Composition-based stats. Identities = 957/1370 (69%), Positives = 1154/1370 (84%), Gaps = 2/1370 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPIT FSGA+MLEFVSYEF+PPKFDVD+C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQS+YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS LMALGMD EEIL TFY K +Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYKR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G+ W P L GAK + +VD DTGE V+E+GKKLT LL++L +KG+K L Sbjct: 241 DGEGWRIPFKPETL-KGAKAITEMVDADTGEVVVEAGKKLTPRLLRTLSDKGLKALKAAD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+A DIVN TGEIY+EAGD IDEK+L I + +IP+L +D +N AYIRN Sbjct: 300 DDLYGNYLAGDIVNYSTGEIYLEAGDEIDEKTLGIILANGFDEIPVLGIDHINVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R+DAL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLTADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +L D VR +RK+DI+A++++LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLTVEDTVRILRKDDILAVVRMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR++ DGKVT+DV+YLSAMEE Y+AQAN+ ++ DGSF +E V CR AGE +L PR+ Sbjct: 600 PYRRIVDGKVTSDVLYLSAMEEAKYYVAQANAEMNADGSFVDEFVVCRHAGEVMLAPRDS 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++ +D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGME VVA Sbjct: 660 MNLMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E L+ SGVDIYRL KFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIGARRGGVVDQVDATRIVIRATED-LEAGKSGVDIYRLQKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGDEV R DI+ADGPSTDLGDLALGRN LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 779 LVTVGDEVNRGDILADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVADDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GT+V+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTIVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL+E+L GQ +++GPKGFKK LS+ ++SEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLIEMLRGQASIAGPKGFKKGAELSNAVVSEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEKVQ +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VD+VLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+G++I LI+ YKANG+I PLR + V+G G E++ ++DDDSVLR+A+QW Sbjct: 1139 LGWACAGMGRQIGELIDAYKANGNIEPLRKTIGDVVGDGPKAEQVHEFDDDSVLRLADQW 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA+E +N MLR+A L +SGQS LYDG TGE FDR VTVGYIYMLKLN Sbjct: 1199 KRGVSIATPVFDGANEADVNDMLRLAGLKDSGQSTLYDGRTGEQFDRQVTVGYIYMLKLN 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LEN++ Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENTKLDE 1368 >gi|299135268|ref|ZP_07028459.1| DNA-directed RNA polymerase, beta subunit [Afipia sp. 1NLS2] gi|50982576|gb|AAP75731.2| RNA polymerase beta subunit [Afipia felis genospecies A] gi|298590245|gb|EFI50449.1| DNA-directed RNA polymerase, beta subunit [Afipia sp. 1NLS2] Length = 1378 Score = 1761 bits (4561), Expect = 0.0, Method: Composition-based stats. Identities = 908/1383 (65%), Positives = 1114/1383 (80%), Gaps = 10/1383 (0%) Query: 1 MAKGV-VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA F Sbjct: 1 MAQSQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPQGGRLDEGLQAVF 60 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 +SVFPI FSG + LEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGA Sbjct: 61 RSVFPINDFSGTSQLEFVRYEFEAPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGA 120 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 KS+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL Sbjct: 121 KSVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLL 180 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS 239 +A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS ++ALG+D EEILSTFY KI Y Sbjct: 181 FAARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMLALGLDGEEILSTFYKKIQYK 240 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 + D W P SA D G ++ LVD D+G+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 241 RAKDGWRVPFSA-DRFRGYSAATDLVDADSGKVVLEAGKKLTVRQARLLQEKGLKALRMS 299 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 L G ++AED+VN +TGEIY EAG+ I EKSL+ + +D+PIL +D VN YIR Sbjct: 300 DADLVGTFLAEDLVNPKTGEIYAEAGEEITEKSLKALIEQGYKDLPILDIDHVNVGPYIR 359 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 NTL DKN R+DAL DIYRVMRPG+ T A++MF LFFDS++YDLS VGRVKMNMR Sbjct: 360 NTLSADKNVTREDALFDIYRVMRPGEPPTLESAQNMFQSLFFDSERYDLSAVGRVKMNMR 419 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 L LD PD R +RKEDI+++IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GL Sbjct: 420 LELDAPDTHRTLRKEDILSVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGL 479 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 LRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH R Sbjct: 480 LRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKR 539 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+E Sbjct: 540 RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVE 599 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 TPYRKV DG+VT++VVYLSAMEE +AQAN LD G FTE+LV CR AGE I + + Sbjct: 600 TPYRKVKDGRVTDEVVYLSAMEEGRYRVAQANVPLDNRGRFTEDLVICRHAGEVIQLTPD 659 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 ++D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VV Sbjct: 660 RVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVV 719 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A+ SGAAI A+R G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMKFQRSNQ+TC+NQR Sbjct: 720 ARDSGAAIAARRTGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKFQRSNQSTCINQR 778 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 PLVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVF Sbjct: 779 PLVKVGDVVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVF 838 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKIT Sbjct: 839 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKIT 898 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++ Sbjct: 899 PKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAI 958 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ERE+IE LA+D+DDEQ ILDRN+Y RL ++L + ++GPKGFKK T ++ ++ EYPRS Sbjct: 959 EREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKGFKKDTKITRAVLEEYPRS 1018 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 QWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA Sbjct: 1019 QWWAFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVA 1078 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ET Sbjct: 1079 VKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILET 1138 Query: 1140 HLGWACVGLGKKI----KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 HLGWAC GLGK+I + + D L+S L++V G E + +D+ +L Sbjct: 1139 HLGWACAGLGKRIGQAVDAYLAKGDGKSDTKALKSTLKEVYGDD---EVVKSLNDNELLE 1195 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 + K GVP++TPVFDGA E+ I ML +A +D+SGQS +YDG TG+ FDR VTVGYIY Sbjct: 1196 LGRNLKPGVPIATPVFDGAKEKDIEDMLELAGVDKSGQSTVYDGRTGDQFDRKVTVGYIY 1255 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEML Sbjct: 1256 MLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1315 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 T+KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ + E Sbjct: 1316 TVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKMGPAPTSE 1375 Query: 1376 EIP 1378 Sbjct: 1376 AAE 1378 >gi|116251532|ref|YP_767370.1| DNA-directed RNA polymerase subunit beta [Rhizobium leguminosarum bv. viciae 3841] gi|158564213|sp|Q1MIE9|RPOB_RHIL3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|115256180|emb|CAK07261.1| putative DNA-directed RNA polymerase beta chain [Rhizobium leguminosarum bv. viciae 3841] Length = 1379 Score = 1761 bits (4561), Expect = 0.0, Method: Composition-based stats. Identities = 957/1370 (69%), Positives = 1154/1370 (84%), Gaps = 2/1370 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPIT FSGA+MLEFVSYEF+PPKFDVD+C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQS+YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS LMALGMD EEIL TFY K +Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYKR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G+ W P L GAK + +VD DTGE V+E+GKKLT LL++L +KG+K L Sbjct: 241 DGEGWRIPFKPETL-KGAKAITEMVDADTGEVVVEAGKKLTPRLLRTLSDKGLKALKAAD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+A DIVN TGEIY+EAGD IDEK+L I + +IP+L +D +N AYIRN Sbjct: 300 DDLYGNYLAGDIVNYSTGEIYLEAGDEIDEKTLGIILANGFDEIPVLGIDHINVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R+DAL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLTADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +L D VR +RK+DI+A++++LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLTVEDTVRILRKDDILAVVRMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR++ DGKVT+DV+YLSAMEE Y+AQAN+ ++ DGSF +E V CR AGE +L PR+ Sbjct: 600 PYRRIVDGKVTSDVLYLSAMEEAKYYVAQANAEMNADGSFVDEFVVCRHAGEVMLAPRDS 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++ +D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGME VVA Sbjct: 660 MNLMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E L+ SGVDIYRL KFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIGARRGGVVDQVDATRIVIRATED-LEAGKSGVDIYRLQKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGDEV R DI+ADGPSTDLGDLALGRN LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 779 LVTVGDEVNRGDILADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVADDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GT+V+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTIVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL+E+L GQ +++GPKGFKK + LS+ ++SEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLIEMLRGQASIAGPKGFKKGSELSNAVVSEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEKVQ +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VD+VLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+G++I LI YKANG+I PLR + V+G G E++ ++DDDSVLR+A+QW Sbjct: 1139 LGWACAGMGRQIGELIEAYKANGNIEPLRKTIGDVVGDGPKAEQVHEFDDDSVLRLADQW 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA+E +N MLR+A L +SGQS LYDG TGE FDR VTVGYIYMLKLN Sbjct: 1199 KRGVSIATPVFDGANEADVNDMLRLAGLKDSGQSTLYDGRTGEQFDRQVTVGYIYMLKLN 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LEN++ Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENTKLDE 1368 >gi|46982190|gb|AAT08135.1| DNA-dependent RNA polymerase beta chain [Brucella melitensis] Length = 1364 Score = 1760 bits (4559), Expect = 0.0, Method: Composition-based stats. Identities = 939/1365 (68%), Positives = 1130/1365 (82%), Gaps = 2/1365 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 NG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKSVFPI Sbjct: 1 NGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRPDEGLQAVFKSVFPIQD 60 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 FSGA+MLEFV YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKE Sbjct: 61 FSGASMLEFVRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKE 120 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF++ G +R++ SQ+HRSPG+ FDHDKG+ SGKLL+A R+IP Sbjct: 121 QDVYMGDMPLMTDNGTFIVNGTERVIFSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPY 180 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W Sbjct: 181 RGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRI 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P SA G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y Sbjct: 241 PYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSY 299 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+VN TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN Sbjct: 300 LAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHVNIGAYIRNTLAVDKN 359 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D Sbjct: 360 ESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDT 419 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IK Sbjct: 420 VRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIK 479 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRLSALG G Sbjct: 480 ERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPG 539 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV D Sbjct: 540 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVD 599 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKVTNDVVYLSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D S Sbjct: 600 GKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVS 659 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI Sbjct: 660 PKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAI 719 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD Sbjct: 720 AARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDR 778 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEF Sbjct: 779 IHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEF 838 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 839 EVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 898 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE L Sbjct: 899 PEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERL 958 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+ Sbjct: 959 AKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVE 1018 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ G Sbjct: 1019 DEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPG 1078 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G Sbjct: 1079 DKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAG 1138 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +GKKI L++ Y+ +I PLR LE + E + YDDD++L +A Q K GV ++ Sbjct: 1139 MGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIA 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK+ Sbjct: 1199 TPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTIGYIYMLKLHHLVDDKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+ Sbjct: 1259 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQP 1363 >gi|39936331|ref|NP_948607.1| DNA-directed RNA polymerase subunit beta [Rhodopseudomonas palustris CGA009] gi|192292057|ref|YP_001992662.1| DNA-directed RNA polymerase subunit beta [Rhodopseudomonas palustris TIE-1] gi|81562131|sp|Q6N4R9|RPOB_RHOPA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699438|sp|B3QC00|RPOB_RHOPT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|39650186|emb|CAE28709.1| RNA polymerase beta subunit [Rhodopseudomonas palustris CGA009] gi|192285806|gb|ACF02187.1| DNA-directed RNA polymerase, beta subunit [Rhodopseudomonas palustris TIE-1] Length = 1374 Score = 1760 bits (4559), Expect = 0.0, Method: Composition-based stats. Identities = 905/1369 (66%), Positives = 1114/1369 (81%), Gaps = 8/1369 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM+ P RP+EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVAEPPGGRPDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FS A+MLEFV YEF+PPK+DVD+C R +TYA PLK+TLRLIVFD+DE TGA+ Sbjct: 60 SVFPISDFSNASMLEFVRYEFEPPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETGAR 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A RIIP +G W+DIEFD+KDI++ RIDRRRK+PVTS + ALG+D EEILSTFY KI+Y + Sbjct: 180 AARIIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLMFALGLDGEEILSTFYNKILYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P + G + L+D DTG+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 TKEGWRVPFDV-NRFRGYSTVNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRMSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEIY EAG+ I +K+L+ + +++P+L +D VN YIRN Sbjct: 299 EELVGNYLAEDLVNPKTGEIYAEAGEEITDKTLKMLNEQGYKELPLLDIDHVNVGPYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNMRL Sbjct: 359 TLNADKNMTREDALFDIYRVMRPGEPPTLDSAQNMFQSLFFDAERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD R +RKEDI+A+IK LV LR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 DLDAPDTHRTLRKEDILAVIKTLVGLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPR 658 PYRKV +G+VT++VVYLSAMEE +AQAN SLD G FT++LV CR + + +P Sbjct: 599 PYRKVKEGRVTDEVVYLSAMEEGRYAVAQANVSLDAKGKFTDDLVVCRAGGTRDVVPMPA 658 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +++D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME V Sbjct: 659 DQVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGV 718 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R GI++Q+DA RIVIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQ Sbjct: 719 VARDSGAAIAARRTGIIDQIDATRIVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQ 777 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDV Sbjct: 778 RPLVKVGDHVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDV 837 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 838 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKI 897 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+++ Sbjct: 898 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALA 957 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDEQ ILDRN+Y RL ++L G+ ++GPKGFKK T ++ ++ EYP+ Sbjct: 958 IEREEIERLAKDRDDEQAILDRNVYGRLADLLDGRQGIAGPKGFKKDTKITRAVLEEYPK 1017 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1018 SQWWLFAAPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFV 1077 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI E Sbjct: 1078 AVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE 1137 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC GLGK+I I+ Y + D+ PLR L K+ G E I DD +L + Sbjct: 1138 THLGWACAGLGKRIGETIDAYYQSQDLKPLRETLRKIYGED---ETIKSLDDGELLELGR 1194 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 GVP++TPVFDGA E I ML++A D SGQS +YDG TG+ FDR VTVGYIYMLK Sbjct: 1195 NLSHGVPIATPVFDGAKEADIEEMLKLAGFDASGQSTVYDGRTGDQFDRRVTVGYIYMLK 1254 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1255 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1314 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 SDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ Sbjct: 1315 SDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSK 1363 >gi|327194525|gb|EGE61383.1| DNA-directed RNA polymerase protein, beta subunit [Rhizobium etli CNPAF512] Length = 1379 Score = 1760 bits (4559), Expect = 0.0, Method: Composition-based stats. Identities = 957/1375 (69%), Positives = 1155/1375 (84%), Gaps = 2/1375 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPIT FSGA+MLEFVSYEF+PPKFDVD+C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQS+YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS LMALGMD EEIL TFY K +Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYKR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G+ W P L GAK + +VD DTGE V+E+GKKLT LL+ L +KG+K L Sbjct: 241 DGEGWRIPFKPETL-KGAKAITEMVDADTGEVVVEAGKKLTPRLLRQLSDKGLKALKAGD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AEDIVN TGEIY+EAGD IDEK+L I + +IP+L +D +N AYIRN Sbjct: 300 DDLYGNYLAEDIVNYSTGEIYLEAGDEIDEKTLGIILSNGFDEIPVLGIDHINVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R+DAL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLSADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +L D VR +RK+DI+A++K+LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLTVEDTVRILRKDDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR++ DGKVTNDV+YLSAMEE Y+AQAN+ ++ DGSF +E V CR AGE +L PR+ Sbjct: 600 PYRRIVDGKVTNDVLYLSAMEEAKYYVAQANAEMNPDGSFVDEFVVCRHAGEVMLAPRDS 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++ +D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGME VVA Sbjct: 660 MNLMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E L+ SGVDIYRL KFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIGARRGGVVDQVDATRIVIRATED-LEAGKSGVDIYRLQKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD V R DI+ADGPSTDLGDLALGRN LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 779 LVTVGDVVNRGDILADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVADDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GT+V+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTIVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL+++L GQ +++GPKGFKK T LS+ ++SEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLIDMLRGQVSIAGPKGFKKGTELSNAVVSEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEKVQ +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VD+VLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+G++I LI YKANG+I PLR + V+G G E++ ++DD+SVLR+A+QW Sbjct: 1139 LGWACAGMGRQIGELIEAYKANGNIEPLRKTIGDVVGAGPKAEQVHEFDDESVLRLADQW 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA+E +N MLR+A L ++GQS LYDG TGE FDR VTVGYIYMLKLN Sbjct: 1199 KRGVSIATPVFDGANEGDVNDMLRLAGLKDTGQSTLYDGRTGEQFDRQVTVGYIYMLKLN 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LEN++ + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENTKLDEAQATQ 1373 >gi|190891347|ref|YP_001977889.1| DNA-directed RNA polymerase protein, beta subunit [Rhizobium etli CIAT 652] gi|226699435|sp|B3PW59|RPOB_RHIE6 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|190696626|gb|ACE90711.1| DNA-directed RNA polymerase protein, beta subunit [Rhizobium etli CIAT 652] Length = 1379 Score = 1760 bits (4558), Expect = 0.0, Method: Composition-based stats. Identities = 958/1375 (69%), Positives = 1155/1375 (84%), Gaps = 2/1375 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPIT FSGA+MLEFVSYEF+PPKFDVD+C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQS+YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS LMALGMD EEIL TFY K +Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYKR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G+ W P L GAK + +VD DTGE V+E+GKKLT LL+ L +KG+K L Sbjct: 241 DGEGWRIPFKPETL-KGAKAITEMVDADTGEVVVEAGKKLTPRLLRQLSDKGLKALKAGD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AEDIVN TGEIY+EAGD IDEK+L I + +IP+L +D +N AYIRN Sbjct: 300 DDLYGNYLAEDIVNYSTGEIYLEAGDEIDEKTLGIILSNGFDEIPVLGIDHINVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R+DAL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLSADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +L D VR +RK+DI+A++K+LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLTVEDTVRILRKDDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR++ DGKVTNDV+YLSAMEE Y+AQAN+ ++ DGSF +E V CR AGE +L PR+ Sbjct: 600 PYRRIVDGKVTNDVLYLSAMEEAKYYVAQANAEMNPDGSFVDEFVVCRHAGEVMLAPRDS 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++ +D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGME VVA Sbjct: 660 MNLMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E L+ SGVDIYRL KFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIGARRGGVVDQVDATRIVIRATED-LEAGKSGVDIYRLQKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD V R DI+ADGPSTDLGDLALGRN LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 779 LVTVGDVVNRGDILADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVADDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GT+V+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTIVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL+++L GQ +++GPKGFKK T LS+ ++SEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLIDMLRGQVSIAGPKGFKKGTELSNAVVSEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEKVQ +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VD+VLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+G++I LI YKANG+I PLR + V+G G E++ ++DDDSVLR+A+QW Sbjct: 1139 LGWACAGMGRQIGELIEAYKANGNIEPLRKTIGDVVGAGPKAEQVHEFDDDSVLRLADQW 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA+E +N MLR+A L ++GQS LYDG TGE FDR VTVGYIYMLKLN Sbjct: 1199 KRGVSIATPVFDGANEGDVNDMLRLAGLKDTGQSTLYDGRTGEQFDRQVTVGYIYMLKLN 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LEN++ + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENTKLDEAQANQ 1373 >gi|36333349|gb|AAP75732.1| RNA polymerase beta subunit [Afipia genosp. 3] Length = 1372 Score = 1758 bits (4553), Expect = 0.0, Method: Composition-based stats. Identities = 902/1366 (66%), Positives = 1111/1366 (81%), Gaps = 6/1366 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA F+SV Sbjct: 2 GQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPTGGRLDEGLQAVFRSV 61 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+ F+G +MLEFV YEF+PPK+DVD+C R +TYA PLK+TLRLIVFD+DE TGAKS+ Sbjct: 62 FPISDFAGTSMLEFVRYEFEPPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETGAKSV 121 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 122 KDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA 181 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI+Y Q Sbjct: 182 RVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMYALGLDGEEILSTFYQKIIYKQIK 241 Query: 243 D-FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 + W P + G + L+D DTG+ +E+GKKLT + L EKG+K L +T + Sbjct: 242 EGGWRVPFDPS-RFRGYSTVNDLIDADTGKVALEAGKKLTVRAARQLAEKGLKALQLTDE 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G Y+A+D+VN +TGEIY EAG+ I EK L+ + +++P+L +D VN AYIRNT Sbjct: 301 DLIGSYLADDLVNAKTGEIYAEAGEEITEKLLKALDEEGYKELPLLDIDHVNIGAYIRNT 360 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNMRL Sbjct: 361 LAADKNVTREDALFDIYRVMRPGEPPTLESAQNMFQSLFFDAERYDLSAVGRVKMNMRLE 420 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 LD PD R +RKEDI+++IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLLR Sbjct: 421 LDAPDTHRTLRKEDILSVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLR 480 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 MER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRL Sbjct: 481 MERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRL 540 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ETP Sbjct: 541 SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVETP 600 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV +G+VT++VVYLSAMEE +AQAN LD G FT+E+V CR AG+ + +P +K+ Sbjct: 601 YRKVKEGRVTDEVVYLSAMEEGRYSVAQANVPLDAKGHFTDEMVICRHAGDVMPLPADKV 660 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME+VVA+ Sbjct: 661 DYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEAVVAR 720 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGAAI A+R+G+++Q+DA R+VIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQRPL Sbjct: 721 DSGAAIAARRSGVIDQIDATRVVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQRPL 779 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VKVGD VR+ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDVFTS Sbjct: 780 VKVGDVVRKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFTS 839 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITPK Sbjct: 840 IHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPK 899 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++ER Sbjct: 900 GESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIER 959 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E+IE LA+D+DDEQ ILDRN+Y RL ++L + ++GPKGFKK + ++ ++ E PRSQW Sbjct: 960 EEIERLAKDRDDEQAILDRNVYGRLADLLENKVGIAGPKGFKKDSKITRAVLDENPRSQW 1019 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 W FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+K Sbjct: 1020 WMFATANDKLMTEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVK 1079 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHL Sbjct: 1080 RKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHL 1139 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWAC G+GKKI I+ + D+ PLR L+ V G E I +DD ++ +A K Sbjct: 1140 GWACAGMGKKIGETIDAFYQRQDLKPLRETLKNVYGDD---EVIKSLNDDELIELARNLK 1196 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I ML++A D+SGQS +YDG TG+ FDR VTVGYIYMLKL+H Sbjct: 1197 PGVPIATPVFDGAKEADIEDMLKLAGFDKSGQSTVYDGRTGDQFDRKVTVGYIYMLKLHH 1256 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1257 LVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1316 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 V GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ Sbjct: 1317 VAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSK 1362 >gi|36333359|gb|AAP75737.1| RNA polymerase beta subunit [Bradyrhizobium liaoningense] Length = 1374 Score = 1758 bits (4553), Expect = 0.0, Method: Composition-based stats. Identities = 900/1380 (65%), Positives = 1118/1380 (81%), Gaps = 8/1380 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ P R +EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPPGGRLDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG +MLEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGAK Sbjct: 60 SVFPISDFSGTSMLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAK 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS + ALG+D E ILSTFY KI+Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLMFALGLDGEAILSTFYKKILYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P A + G + L+D DTG+ V+E+GKKLT + L+EKG+K L + Sbjct: 240 TKEGWRVPFDA-NRFRGYSTVNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRMAD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G YVAED+VN +TGEI+ EAG+ I +K ++ + +++P+L +D VN YIRN Sbjct: 299 EELVGNYVAEDLVNPKTGEIHAEAGEEITDKLMKALNEQGYKELPLLDIDHVNVGPYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNMRL Sbjct: 359 TLSADKNMTREDALFDIYRVMRPGEPPTLESAQAMFQSLFFDAERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD R +RKEDI+++IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 DLDAPDTQRTLRKEDILSVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPR 658 PYRK+ DG+VT++VVYLSAMEE +AQAN +D G FTE+LV CR + + + + Sbjct: 599 PYRKIKDGRVTDEVVYLSAMEEGRYSVAQANVPVDAKGRFTEDLVVCRSSGTRDVVPMTP 658 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +K+D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME V Sbjct: 659 DKVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGV 718 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R+G+++Q+DA R+VIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQ Sbjct: 719 VARDSGAAIAARRSGVIDQIDATRVVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQ 777 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDV Sbjct: 778 RPLVKVGDIVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDV 837 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 838 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKI 897 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+++ Sbjct: 898 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALA 957 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDEQ ILDRN+Y+RL E+L G+ ++GPKGFKK T ++ ++ EYP+ Sbjct: 958 IEREEIERLAKDRDDEQAILDRNVYNRLAELLEGRQGIAGPKGFKKDTKITRAVLEEYPK 1017 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA ++K+ +E+++ Q + SK LE RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1018 SQWWLFASPNDKLMAEIEAMRKQSDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFV 1077 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI E Sbjct: 1078 AVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE 1137 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC GLGK+I ++ Y + DI PL+ L+KV G E I +D+ +L + Sbjct: 1138 THLGWACAGLGKRIGQTVDAYLSKQDIKPLKETLKKVYGED---ETIKSLNDNELLELGH 1194 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 GVP++TPVFDGA E I ML++A LD SGQS +YDG TG+PFDR VTVGYIYMLK Sbjct: 1195 NLSRGVPIATPVFDGAKEADIEEMLKLAGLDASGQSTVYDGRTGDPFDRKVTVGYIYMLK 1254 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1255 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1314 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 SDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ + E Sbjct: 1315 SDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKMGPAPTSEAAE 1374 >gi|323137105|ref|ZP_08072184.1| DNA-directed RNA polymerase, beta subunit [Methylocystis sp. ATCC 49242] gi|322397463|gb|EFX99985.1| DNA-directed RNA polymerase, beta subunit [Methylocystis sp. ATCC 49242] Length = 1383 Score = 1757 bits (4551), Expect = 0.0, Method: Composition-based stats. Identities = 893/1378 (64%), Positives = 1114/1378 (80%), Gaps = 7/1378 (0%) Query: 1 MAKGVV--FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAA 58 MA+ F G R RKFFG E +P+LIEVQKASYD FL+++ RP+EGLQ+ Sbjct: 1 MAQTSARKFTGRKRTRKFFGHIREAAAMPNLIEVQKASYDQFLLVDEPKGGRPDEGLQSV 60 Query: 59 FKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 FKSVFPI+ FS A+LEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFDVD T Sbjct: 61 FKSVFPISDFSQVALLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPDTQ 120 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 AKS+KDIKEQ +YMGD+P MT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKL Sbjct: 121 AKSVKDIKEQDVYMGDMPFMTSNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKL 180 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 L+A RIIP +G W+DIEFD+KDI++ RIDRRRK+PVTS L ALG+D EEIL+TFY I Y Sbjct: 181 LFAARIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLFALGLDGEEILTTFYKTITY 240 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + G+ W P A L G K + ++D DTG+ ++E+GKKL + L +KGVK + + Sbjct: 241 TADGENWRMPFDAERL-KGLKAVADMIDADTGDVILEAGKKLAVRAARQLADKGVKAIRV 299 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 +++ L G Y+A+D+ + +TGEI+ EAGD I K+L + ++PIL +D +N YI Sbjct: 300 SAEDLYGQYLAQDLYDPKTGEIFAEAGDEITAKTLPLLLEKGFDELPILDIDHINVGPYI 359 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL DKN +R++AL DIYRVMRPG+ T AE+MF+ LFFD+++YDLS VGRVKMNM Sbjct: 360 RNTLAVDKNSNREEALFDIYRVMRPGEPPTMDTAEAMFHSLFFDAERYDLSAVGRVKMNM 419 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 RL+LD PD R +R+EDI+A++K LVDLR+G+G IDDID+LGNRRVRSVGE+++NQYRLG Sbjct: 420 RLDLDAPDTTRTLRREDILAVVKALVDLRDGRGEIDDIDHLGNRRVRSVGELMENQYRLG 479 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LLRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH Sbjct: 480 LLRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHK 539 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFI Sbjct: 540 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFI 599 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E PYR+V DGKVTN+V YLSAMEE ++AQAN+ +D DG+ TE+LV CR AG+ +LVPR Sbjct: 600 EAPYRRVRDGKVTNEVAYLSAMEEAKYHVAQANAPIDADGNLTEDLVLCRHAGDVMLVPR 659 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 EK+D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL+KA+AP VGTGME+V Sbjct: 660 EKVDAMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKADAPLVGTGMEAV 719 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA SGAAI A+R G+V+Q+DA RIVIR+ E LDP+ GVDIYRLMKFQRSNQ+TC+NQ Sbjct: 720 VAADSGAAISARRTGVVDQIDATRIVIRATEE-LDPAKPGVDIYRLMKFQRSNQSTCINQ 778 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 +PLV+VGD V++ DIIADGPSTDLGDLALGRN+LVAFMPW+GYNFEDS+L++ER+V EDV Sbjct: 779 KPLVRVGDIVKKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLNERIVKEDV 838 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHI+EFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 839 FTSIHIDEFEVMARDTKLGPEEITRDIPNVSEETLKNLDEAGIVYIGAEVQAGDILVGKI 898 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG++K+ER+ + Sbjct: 899 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVEKDERAQA 958 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDE ILDRN+Y+RL E L G+ A++GPK FKK VL+ ++ EYPR Sbjct: 959 IEREEIERLAKDRDDELAILDRNVYARLSETLIGKKAIAGPKSFKKEQVLTQAILDEYPR 1018 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW F ++D+ + ++E+++ QY+ SK LE+RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1019 SQWWTFVIEDDALMSSIEAVRKQYDESKKGLENRFLDKVEKLQRGDELPPGVMKMVKVFV 1078 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGTPVDIVLNPLGVPSRMNVGQI E Sbjct: 1079 AVKRKIQPGDKMAGRHGNKGVVSRIVPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQILE 1138 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC GLGK++ ++ Y + D +P+R+ L+ V G E+I + D+ +++ + + Sbjct: 1139 THLGWACAGLGKQVGKAVDAYMKSRDTTPIRAALKDVYG---PDEEIDNLDETTLVEIGK 1195 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K GVP++TPVFDGA E+ I ML A L SGQ L+DG TGE FDR VTVGYIYMLK Sbjct: 1196 DLKRGVPIATPVFDGAREKDIVDMLTKAGLSSSGQVTLFDGRTGEAFDRKVTVGYIYMLK 1255 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1256 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1315 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 SDDV GRT+VYESIV G+DTFE+G PESFNVL+KEM++L L+++L N+ + E Sbjct: 1316 SDDVAGRTKVYESIVRGDDTFESGIPESFNVLIKEMRSLALNVELTNAEPPEGHEEIE 1373 >gi|209884799|ref|YP_002288656.1| DNA-directed RNA polymerase, beta subunit [Oligotropha carboxidovorans OM5] gi|209872995|gb|ACI92791.1| DNA-directed RNA polymerase, beta subunit [Oligotropha carboxidovorans OM5] Length = 1377 Score = 1757 bits (4551), Expect = 0.0, Method: Composition-based stats. Identities = 906/1372 (66%), Positives = 1114/1372 (81%), Gaps = 10/1372 (0%) Query: 1 MAKGV-VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM+ R +EGLQA F Sbjct: 1 MAQSQQTFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVEEPEGGRLDEGLQAVF 60 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 +SVFPI+ FSG + LEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGA Sbjct: 61 RSVFPISDFSGTSQLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGA 120 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 KS+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL Sbjct: 121 KSVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLL 180 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS 239 +A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS ++ALG+D EEILSTFY KI Y Sbjct: 181 FAARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMLALGLDGEEILSTFYKKIQYK 240 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 + + W P SA D G ++ L+D D+G+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 241 RAKEGWRVPFSA-DRFRGYSAATDLIDADSGKVVLEAGKKLTVRQARQLQEKGLKALRMS 299 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 L G+++AED+VN +TGEIY EAG+ I EKSL+ + +D+PIL +D VN YIR Sbjct: 300 DADLVGMFLAEDLVNLKTGEIYAEAGEEITEKSLKALIEQGYKDLPILDIDHVNVGPYIR 359 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 NTL DKN R+DAL DIYRVMRPG+ T A++MF LFFDS++YDLS VGRVKMNMR Sbjct: 360 NTLSADKNVTREDALFDIYRVMRPGEPPTLESAQNMFQSLFFDSERYDLSAVGRVKMNMR 419 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 L LD PD R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GL Sbjct: 420 LELDAPDTHRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGL 479 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 LRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH R Sbjct: 480 LRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKR 539 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+E Sbjct: 540 RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVE 599 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 TPYRKV DG+VT++VVYLSAMEE +AQAN LD G FTE+LV CR AGE I + + Sbjct: 600 TPYRKVKDGRVTDEVVYLSAMEEGRYRVAQANVPLDNRGRFTEDLVVCRHAGEVIQLTPD 659 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 ++D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VV Sbjct: 660 RVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVV 719 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A+ SGAAI A+R+G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMKFQRSNQ+TC+NQR Sbjct: 720 ARDSGAAIAARRSGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKFQRSNQSTCINQR 778 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 PLVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVF Sbjct: 779 PLVKVGDVVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVF 838 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKIT Sbjct: 839 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKIT 898 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++ Sbjct: 899 PKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAI 958 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ERE+IE LA+D+DDEQ ILDRN+Y RL ++L + ++GPKGFKK T ++ ++ EYPRS Sbjct: 959 EREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKGFKKDTKITRAVLDEYPRS 1018 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 QWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA Sbjct: 1019 QWWAFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVA 1078 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ET Sbjct: 1079 VKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILET 1138 Query: 1140 HLGWACVGLGKKI----KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 HLGWAC GLGK+I + + D L+S L++V G E + +D+ +L Sbjct: 1139 HLGWACAGLGKRIGQAVDAYLAKGDGKSDTKALKSTLKEVYGDD---EVVKSLNDNELLE 1195 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 + K GVP++TPVFDGA E I ML +A +D+SGQS++YDG TG+ FDR VTVGYIY Sbjct: 1196 LGRNLKPGVPIATPVFDGAKEGDIEQMLELAGVDKSGQSVVYDGRTGDRFDRKVTVGYIY 1255 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEML Sbjct: 1256 MLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1315 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 T+KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ Sbjct: 1316 TVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSK 1367 >gi|36333343|gb|AAP75729.1| RNA polymerase beta subunit [Afipia clevelandensis ATCC 49720] Length = 1376 Score = 1757 bits (4550), Expect = 0.0, Method: Composition-based stats. Identities = 906/1381 (65%), Positives = 1113/1381 (80%), Gaps = 8/1381 (0%) Query: 1 MAKGV-VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA F Sbjct: 1 MAQSQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPAGGRLDEGLQAVF 60 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 +SVFPI FSG + LEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGA Sbjct: 61 RSVFPINDFSGTSQLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGA 120 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 KS+KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL Sbjct: 121 KSVKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLL 180 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS 239 +A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI Y Sbjct: 181 FAARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKIQYK 240 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 + D W P A D G + L+D D+G+ V+E+GKKLT + L+EKG+K L + Sbjct: 241 RIKDGWRVPFVA-DRFRGYSTINDLIDADSGKVVLEAGKKLTVRTARQLQEKGLKALRFS 299 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + L G Y+AED+VN +TGEI+ EAG+ I EK L+ + +++PIL +D VN YIR Sbjct: 300 DEELVGSYLAEDLVNPKTGEIHAEAGEEITEKLLKALNEQGYKELPILDIDHVNIGPYIR 359 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 NTL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNMR Sbjct: 360 NTLSADKNMTREDALFDIYRVMRPGEPPTLDSAQAMFQSLFFDAERYDLSAVGRVKMNMR 419 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 L LD PD +R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GL Sbjct: 420 LELDAPDTMRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGL 479 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 LRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH R Sbjct: 480 LRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKR 539 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+E Sbjct: 540 RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVE 599 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 TPYRKV DG+VT+DVVYLSAMEE Y+AQAN LD G FT++LV CR AGE + + + Sbjct: 600 TPYRKVKDGRVTDDVVYLSAMEEGRHYVAQANVPLDNKGRFTDDLVICRHAGEVLQLSPD 659 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 K+D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VV Sbjct: 660 KVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVV 719 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A+ SGAAI A+R G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQR Sbjct: 720 ARDSGAAIAARRTGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQR 778 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 PLVKVGD+VR+ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVF Sbjct: 779 PLVKVGDQVRKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVF 838 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDIL GKIT Sbjct: 839 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILCGKIT 898 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++ Sbjct: 899 PKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAI 958 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ERE+IE LA+D+DDEQ ILDRN+Y RL ++L + ++GPKGFKK T ++ ++ EYP+S Sbjct: 959 EREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKGFKKDTKITRAVLEEYPKS 1018 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 QWWQFA ++K+ +E++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA Sbjct: 1019 QWWQFASPNDKLMAEIEAMHKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVA 1078 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ET Sbjct: 1079 VKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILET 1138 Query: 1140 HLGWACVGLGKKIKSLINDYK--ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 HLGWAC GLGK+I ++ Y DI PL+S L++V G E I +D ++ + Sbjct: 1139 HLGWACAGLGKRIGQAVDAYYGHGKSDIKPLKSTLKEVYGDD---EVIKTLNDQELMELG 1195 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 ++GVP++TPVFDGA E I ML +A ++SGQS +YDG TG+ FDR VTVGYIYML Sbjct: 1196 RNLRAGVPIATPVFDGAKEADIEQMLELAGQNKSGQSTVYDGRTGDQFDRNVTVGYIYML 1255 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+ Sbjct: 1256 KLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1315 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEI 1377 KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ + E Sbjct: 1316 KSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKMGPAPTSEAA 1375 Query: 1378 P 1378 Sbjct: 1376 E 1376 >gi|182678330|ref|YP_001832476.1| DNA-directed RNA polymerase subunit beta [Beijerinckia indica subsp. indica ATCC 9039] gi|182634213|gb|ACB94987.1| DNA-directed RNA polymerase, beta subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 1387 Score = 1756 bits (4548), Expect = 0.0, Method: Composition-based stats. Identities = 898/1365 (65%), Positives = 1110/1365 (81%), Gaps = 5/1365 (0%) Query: 1 MAKGV--VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAA 58 MA+ + F G RVRKFFG E+ ++P+LIEVQKASYD FL+++ RP+EGLQ+ Sbjct: 1 MAQSLAQTFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLLVDEPKGGRPDEGLQSV 60 Query: 59 FKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 FKSVFPI+ FSG A+LEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFDVD TG Sbjct: 61 FKSVFPISDFSGTALLEFVKYEFELPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPDTG 120 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 AKS+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKL Sbjct: 121 AKSVKDIKEQDVYMGDMPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKL 180 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 L+A RIIP +G W+DIEFD+KDI++ RIDRRRK+P TS L ALGMD EEILSTFY IVY Sbjct: 181 LFAARIIPYRGSWLDIEFDAKDIVYARIDRRRKIPATSVLYALGMDGEEILSTFYKTIVY 240 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 ++ D W P A M G K + L+D ++GE V+E+GKKLT + L E+G+KF+ Sbjct: 241 TRDKDGWRIPFDAE-RMKGMKAAIDLIDAESGEVVLEAGKKLTVRTARQLAERGLKFIKA 299 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + L G Y+A D+ N +TGEI+ EAG+ I K+L + S +IP+L +D +N YI Sbjct: 300 QDEDLHGQYIASDLYNPQTGEIFAEAGEEISAKTLTTLVDSGFEEIPVLDIDHINIGPYI 359 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL DKN R+DAL DIYRVMRPG+ T AE+MF+ LFFD ++YDLS VGRVKMNM Sbjct: 360 RNTLAVDKNNSREDALFDIYRVMRPGEPPTLETAEAMFHSLFFDPERYDLSAVGRVKMNM 419 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R++LD D VR +RK DI+A+++ LVDLR+G+G IDDID+LGNRRVRSVGE+++NQYRLG Sbjct: 420 RMDLDAADTVRILRKADIVAVMRALVDLRDGRGEIDDIDHLGNRRVRSVGELMENQYRLG 479 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LLRMER+IKER+SSVDID+VMPQDLINAKP ++V EFF SSQLSQ + N LS ITH Sbjct: 480 LLRMERAIKERMSSVDIDTVMPQDLINAKPAAASVREFFGSSQLSQFMDQTNPLSEITHK 539 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFI Sbjct: 540 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFI 599 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E PYR+V D VT+DVVYLSAMEE Y+AQA++ +D D E+L+ CR AG+ I+VPR Sbjct: 600 EAPYRRVRDNHVTDDVVYLSAMEESKYYVAQADAKVDADRGLVEDLIVCRHAGDVIMVPR 659 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 E++DF+D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL+KA+AP VGTGME+V Sbjct: 660 ERVDFMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKADAPLVGTGMEAV 719 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R G ++Q+DA RIVIR+ E D GVDIYRLMKFQRSNQ+TCVNQ Sbjct: 720 VARDSGAAIAARRTGYIDQIDATRIVIRATEET-DAGKPGVDIYRLMKFQRSNQSTCVNQ 778 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 +PLV+VGD VR+ DIIADGPSTDLGDLALGRN+LVAFMPW+GYNFEDS+L++ER+V +DV Sbjct: 779 KPLVRVGDFVRKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLNERIVKDDV 838 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHI+EFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 839 FTSIHIDEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQAGDILVGKI 898 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+ + Sbjct: 899 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERAQA 958 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDE ILDRN+Y+RL+++L G+ A++GPKGFKK TVLS +I EYPR Sbjct: 959 IEREEIERLAKDRDDELAILDRNVYTRLIDLLDGKKAIAGPKGFKKETVLSRSVIEEYPR 1018 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA++ +++ +E+++ QY+ +K LE+RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1019 SQWWTFAIESDQLMAEIEAMRKQYDEAKKGLENRFLDKVEKLQRGDELPPGVMKMVKVFV 1078 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL DG PVDIVLNPLGVPSRMNVGQI E Sbjct: 1079 AIKRKIQPGDKMAGRHGNKGVVSKIVPQEDMPFLADGQPVDIVLNPLGVPSRMNVGQILE 1138 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC GLGK++ +N Y D P+R L ++ G G E+IS D+++++ V E Sbjct: 1139 THLGWACAGLGKQVSEAVNAYLRQQDTQPIRDKLIEIYGEGQ-REQISALDEETLVEVGE 1197 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 + GVP++TPVFDGA E+ I +ML A LD SGQ LYDG +GE FDR VTVGYIYMLK Sbjct: 1198 NLRRGVPIATPVFDGAREKDIVAMLEEAGLDHSGQVTLYDGRSGEAFDRKVTVGYIYMLK 1257 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1258 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1317 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 SDDV GRT+VYESIV G+D FE+G PESFNVLVKEM++LGL+++L Sbjct: 1318 SDDVAGRTKVYESIVRGDDAFESGIPESFNVLVKEMRSLGLNVEL 1362 >gi|170738710|ref|YP_001767365.1| DNA-directed RNA polymerase subunit beta [Methylobacterium sp. 4-46] gi|226699423|sp|B0UHX6|RPOB_METS4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|168192984|gb|ACA14931.1| DNA-directed RNA polymerase, beta subunit [Methylobacterium sp. 4-46] Length = 1374 Score = 1756 bits (4547), Expect = 0.0, Method: Composition-based stats. Identities = 897/1382 (64%), Positives = 1122/1382 (81%), Gaps = 8/1382 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R+RKFFGK E+ ++P+LIEVQKASYD FLM++ RP+EGLQ+ FK Sbjct: 1 MANTLV--GRKRIRKFFGKIREVAEMPNLIEVQKASYDQFLMVDEPEGGRPDEGLQSVFK 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FS A+LEFV Y F+ PK+DVD+C R +T+A PLK+TLRLIVFDVD TGAK Sbjct: 59 SVFPISDFSSTALLEFVKYTFEAPKYDVDECRQRGITFAAPLKVTLRLIVFDVDPDTGAK 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT++GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 119 SVKDIKEQDVYMGDMPLMTENGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A RIIP +G W+D+EFD+KDI++ RIDR+RK+PVTS L ALG+D EEILSTFY +I Y++ Sbjct: 179 AARIIPYRGSWLDVEFDAKDIVYARIDRKRKIPVTSLLFALGLDGEEILSTFYNRITYAR 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G W P A L G K ++ L+D D+GE V+E+GKKLT+ + + EKG K L T Sbjct: 239 DGRDWRVPYDAERL-KGFKATTDLIDADSGEVVLEAGKKLTARAARQIAEKGTKALRATD 297 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEIY EAGD I EK L+ + I +IP+L +D VN YIRN Sbjct: 298 EDLVGQYIAEDMVNYKTGEIYAEAGDEISEKLLKGLSDVGIEEIPVLDIDHVNVGPYIRN 357 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+ AL DIYRVMRPG+ T AE+MF+ LFFD+++YDLS VGRVKMNMRL Sbjct: 358 TLAVDKNSAREGALFDIYRVMRPGEPPTLDTAEAMFHSLFFDAERYDLSAVGRVKMNMRL 417 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD +R +R+ED++A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYRLGLL Sbjct: 418 DLDAPDTMRTLRREDMLAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLL 477 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RR Sbjct: 478 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRR 537 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIET Sbjct: 538 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIET 597 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 P+R+V G VT++VVYLSAMEE Y+AQA++++D + TE+LV CR AGE I+V ++ Sbjct: 598 PFRRVRGGVVTDEVVYLSAMEEAKYYVAQASAAMDAERRLTEDLVVCRRAGEVIVVAPDR 657 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++A+APFVGTGME+VVA Sbjct: 658 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAVVA 717 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+RAG+++QVDA RIVIR+ E DP+ GVDIYRL KFQRSNQ+TC+ Q+P Sbjct: 718 RDSGAAIAARRAGVIDQVDATRIVIRATEET-DPTKPGVDIYRLQKFQRSNQSTCITQKP 776 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VG+ V++ DIIADGPST+ G+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVFT Sbjct: 777 LVRVGEVVKKGDIIADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFT 836 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+ GDILVGKITP Sbjct: 837 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHAGDILVGKITP 896 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV+GT+V+VR+FNRHG+DK+ER+ ++E Sbjct: 897 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDERAQAIE 956 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN Y+RL ++L GQ+ V+GPKGFKK T+L+ +++++YPRSQ Sbjct: 957 REEIERLAKDRDDEQAILDRNTYARLADVLVGQSPVAGPKGFKKDTLLTREVLADYPRSQ 1016 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV D+++ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1017 WWQFAVVDDRMMTEIEAMQKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1076 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1077 KRKIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1136 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG+++ ++ Y N D PLR + ++ + D + V Sbjct: 1137 LGWAAAGLGRQVAQAVDAYLRNQDAQPLREQMSRIYSPSE----LEGLSDRELAEVGNNL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++TPVF+GA E I +ML MA LD SGQS LYDG TGEPFDR VTVGYIYMLKL+ Sbjct: 1193 RRGVPMATPVFNGAKEADIEAMLEMAGLDRSGQSTLYDGRTGEPFDRKVTVGYIYMLKLH 1252 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1253 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1312 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L +S+ + ++E P+ Sbjct: 1313 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELISSKRAANDQLEAPPEA 1372 Query: 1381 NK 1382 + Sbjct: 1373 AE 1374 >gi|115525596|ref|YP_782507.1| DNA-directed RNA polymerase subunit beta [Rhodopseudomonas palustris BisA53] gi|122295399|sp|Q07KK7|RPOB_RHOP5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|115519543|gb|ABJ07527.1| DNA-directed RNA polymerase, beta subunit [Rhodopseudomonas palustris BisA53] Length = 1373 Score = 1756 bits (4547), Expect = 0.0, Method: Composition-based stats. Identities = 904/1369 (66%), Positives = 1110/1369 (81%), Gaps = 8/1369 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM+ R +EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVEEPVGGRLDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FS +MLEFV YEF+PPK+DVD+C R +TYA PLK+TLRLIVFD+DE TGA+ Sbjct: 60 SVFPISDFSNTSMLEFVRYEFEPPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETGAR 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI+Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVFARIDRRRKLPVTSLMFALGLDGEEILSTFYKKIIYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P A + G ++ ++D DTG+ V+E+GKKLT + L+EKG+K L +T Sbjct: 240 TKEGWRVPFDA-NRFRGYTTTNDVIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRMTD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + + G Y+AED+VN +TGEIY EAG+ I EKSL+ + +D+ +L +D VN YIRN Sbjct: 299 EDIVGNYLAEDLVNPKTGEIYAEAGEEITEKSLKALNEQGYKDLTLLDIDHVNIGPYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFDS++YDLS VGRVKMNMRL Sbjct: 359 TLAADKNMTREDALFDIYRVMRPGEPPTLDSAQNMFQSLFFDSERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD PD R +RKEDI+A+IK LV LR+G+G IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 ELDAPDTHRTLRKEDILAVIKTLVGLRDGRGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPR 658 PYR+V DG+VT++VVYLSAMEE +AQAN LD G F E+L+ CR + +L+P Sbjct: 599 PYRRVKDGRVTDEVVYLSAMEEGRYAVAQANVQLDPKGRFVEDLIVCRDGGTRDVVLIPA 658 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +K+DF+D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME V Sbjct: 659 DKVDFMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGV 718 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R G+V+Q+DA RIVIR+ E LDP+ SGVDIYRLMKFQRSNQ+TC+NQ Sbjct: 719 VARDSGAAIAARRTGVVDQIDATRIVIRATED-LDPTKSGVDIYRLMKFQRSNQSTCINQ 777 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD+V + DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DV Sbjct: 778 RPLVKVGDQVAKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDV 837 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 838 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKI 897 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+++ Sbjct: 898 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALA 957 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDEQ ILDRN+Y RL ++L + ++GPKGFKK T ++ ++ EYP+ Sbjct: 958 IEREEIERLAKDRDDEQAILDRNVYGRLADLLDNRQGIAGPKGFKKDTKITRAVLEEYPK 1017 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1018 SQWWMFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFV 1077 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI E Sbjct: 1078 AVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE 1137 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC GLGK+I I+ Y D+ P+R L+K+ G E I +D ++ +A Sbjct: 1138 THLGWACAGLGKRIGQTIDAYYQKQDLKPMRETLKKIYGDD---ETIKSLNDAELIELAR 1194 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K GVP++TPVFDGA E I ML +A LD SGQS +YDG TG+ FDR VTVGYIYMLK Sbjct: 1195 NLKPGVPIATPVFDGAKEADIEEMLHLAGLDASGQSTVYDGRTGDSFDRKVTVGYIYMLK 1254 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1255 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1314 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 SDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ Sbjct: 1315 SDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSK 1363 >gi|328543349|ref|YP_004303458.1| DNA-directed RNA polymerase subunit beta [Polymorphum gilvum SL003B-26A1] gi|326413094|gb|ADZ70157.1| DNA-directed RNA polymerase subunit beta [Polymorphum gilvum SL003B-26A1] Length = 1378 Score = 1755 bits (4546), Expect = 0.0, Method: Composition-based stats. Identities = 914/1376 (66%), Positives = 1127/1376 (81%), Gaps = 1/1376 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 FNG RVRKFFG ++ +P+LIEVQKASYD FL ++ R +EGLQA F+SV Sbjct: 1 MTHTFNGRKRVRKFFGSIRDVTAMPNLIEVQKASYDQFLQVDEPKGGRSDEGLQAVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+ F+G A+LEFV +EF+ PK+DV++C R +TYA PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPISDFAGTALLEFVRFEFEAPKYDVEECRQRGMTYAAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+P MT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYMGDMPFMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS LMALG+D EEIL+TFY +I YS+ G Sbjct: 181 RVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGLDGEEILNTFYKRIEYSRSG 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + G K S LVD D+GE VIE+G+K+T+ +K L EKGVK L +T + Sbjct: 241 KGAWRMPFDGDRLKGTKASYDLVDADSGEVVIEAGRKITARTIKQLTEKGVKALKVTDED 300 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G Y+AED+V+ TGEIY EAGD I+ K L+E+ DI +L +D VN AYIRNTL Sbjct: 301 LHGQYLAEDMVDPSTGEIYAEAGDEINAKILDELVQRGYEDISVLDIDHVNTGAYIRNTL 360 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN+ R+DAL DIYRVMRPG+ T AE+MF LFFD+++YDLS VGRVKMNMRL+L Sbjct: 361 AVDKNESREDALFDIYRVMRPGEPPTIDSAEAMFQSLFFDAERYDLSAVGRVKMNMRLDL 420 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + D VR +RKEDI+A+I++L++LR+GKG IDDIDNLGNRRVRSVGE+++NQYR+GLLRM Sbjct: 421 ECEDTVRTLRKEDILAVIRLLLELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLRM 480 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RRLS Sbjct: 481 ERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLS 540 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PY Sbjct: 541 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPY 600 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG V+N+VVYLSAMEE Y+AQ+N+ +DE G F E+LV CR AGE +LVP +++D Sbjct: 601 RKVKDGVVSNEVVYLSAMEEAKHYVAQSNAEMDESGRFVEDLVTCRHAGENMLVPSDRVD 660 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGMES+VA+ Sbjct: 661 LMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMESIVARD 720 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGAAI A+R G+V+QVDA RIVIR+ E LDPS SGVDIYRLMKFQRSNQNTC+NQRPLV Sbjct: 721 SGAAIAARRGGVVDQVDATRIVIRATED-LDPSKSGVDIYRLMKFQRSNQNTCINQRPLV 779 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVFTSI Sbjct: 780 RVGDVISKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLSERIVRDDVFTSI 839 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 H+EEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAE+ PGDILVGKITPKG Sbjct: 840 HLEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAELKPGDILVGKITPKG 899 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GTVV+VR+FNRHG++K+ER++++ERE Sbjct: 900 ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVTGTVVEVRVFNRHGVEKDERAMAIERE 959 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE LA+D+DDEQ ILDRN+Y RL E+L G+ A+ GPKG KK V+S D+++E+PRSQWW Sbjct: 960 EIERLAKDRDDEQAILDRNVYGRLAEMLIGKTAIGGPKGSKKDVVISGDVLNEFPRSQWW 1019 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 QFA DEK VE+L+ QY+ S+ LE RF +K+EK+Q GD++PPGV+++VKVFVA+KR Sbjct: 1020 QFAADDEKFMSEVEALRGQYDESRKRLEQRFIDKVEKLQRGDELPPGVMKMVKVFVAVKR 1079 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS+I P EDMPFL+DGT VDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1080 KIQPGDKMAGRHGNKGVVSKINPNEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETHLG 1139 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WAC G+G+KI L + Y+ +G+IS L+ + ++ G + + ++DD+S++R+A+Q K Sbjct: 1140 WACAGMGRKIGELYDQYRKSGEISALKGQIVEIYGDNLKGDPVKEFDDESIVRLADQLKK 1199 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GV ++TPVFDGA E I ML++ADLD SGQS+LYDG TGEPFDR VTVGYIYMLKL+H+ Sbjct: 1200 GVSIATPVFDGAHEPDIVDMLKVADLDPSGQSVLYDGRTGEPFDRKVTVGYIYMLKLHHL 1259 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1260 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1319 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+ + Sbjct: 1320 AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELQQTEVPQITDEPAAD 1375 >gi|217979965|ref|YP_002364112.1| DNA-directed RNA polymerase subunit beta [Methylocella silvestris BL2] gi|217505341|gb|ACK52750.1| DNA-directed RNA polymerase, beta subunit [Methylocella silvestris BL2] Length = 1376 Score = 1755 bits (4545), Expect = 0.0, Method: Composition-based stats. Identities = 892/1370 (65%), Positives = 1108/1370 (80%), Gaps = 7/1370 (0%) Query: 1 MAK--GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAA 58 MA+ FNG R+RKFFG E+ ++P+LIEVQKASYD FL+++ RP+EGLQ+ Sbjct: 1 MAQFSAQTFNGRKRIRKFFGHIREVAEMPNLIEVQKASYDQFLLVDEPQGGRPDEGLQSV 60 Query: 59 FKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 FKSVFPI+ FS A+LEFV YEF+PPK+DVD+C R +T+A PLK+TLRLIVFDVD T Sbjct: 61 FKSVFPISDFSNTALLEFVKYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPDTA 120 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 A+S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKL Sbjct: 121 ARSVKDIKEQDVYMGDMPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKL 180 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 L+A RIIP +G W+DIEFD+KDI++ RIDRRRK+P TS L ALGMD EEILSTFY I+ Sbjct: 181 LFAARIIPYRGSWLDIEFDAKDIVYARIDRRRKIPATSVLYALGMDGEEILSTFYKTILV 240 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 ++ + W P A L G K L+D +TGE V+E+GKKLT + L E+G+KFL + Sbjct: 241 TRDKEGWRQPFDAERL-KGLKAVVDLLDAETGEVVLEAGKKLTVRTARQLAERGLKFLRM 299 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + L G Y+A D+ + TGEI+ EAG+ I K+L + + ++P+L +D +N YI Sbjct: 300 QDEDLHGQYIATDLYDSATGEIFAEAGEEITVKTLPLLIEAGFDELPLLDIDHINIGPYI 359 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL DKNK R++AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNM Sbjct: 360 RNTLHVDKNKAREEALFDIYRVMRPGEPPTLDSAEAMFHSLFFDSERYDLSAVGRVKMNM 419 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R++LD D VR +RKEDIIA+++ LVDLR+G+G IDDID+LGNRRVRSVGE+++NQYRLG Sbjct: 420 RMDLDAADTVRTLRKEDIIAVMRALVDLRDGRGEIDDIDHLGNRRVRSVGELMENQYRLG 479 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LLRMER+IKER+SSVDID+VMPQDLINAKP ++V EFF SSQLSQ + N LS ITH Sbjct: 480 LLRMERAIKERMSSVDIDTVMPQDLINAKPAAASVREFFGSSQLSQFMDQTNPLSEITHK 539 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFI Sbjct: 540 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFI 599 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E PYR+V + V+++VVYLSAMEE Y+AQAN+ LD D TE+LV CR AG+ ++VPR Sbjct: 600 EAPYRRVKENHVSDEVVYLSAMEESKYYVAQANAPLDADSRLTEDLVVCRHAGDVVMVPR 659 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 E++DF+D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++A+AP VGTGME+V Sbjct: 660 ERVDFMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPLVGTGMEAV 719 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R G ++Q+DA RIV+R+ E D S GVDIYRLMKFQRSNQ+TCVNQ Sbjct: 720 VARDSGAAIAARRTGYIDQIDATRIVVRATEES-DASKPGVDIYRLMKFQRSNQSTCVNQ 778 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 +PLV+VGD VR+ DIIADGPSTDLGDLALGRN+LVAFMPW+GYNFEDS+L++ER+V +DV Sbjct: 779 KPLVRVGDFVRKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLNERIVKDDV 838 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHI+EFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 839 FTSIHIDEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQAGDILVGKI 898 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV+GT+V+VR+FNRHG++K+ER+ + Sbjct: 899 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVEKDERAQA 958 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDE ILDRN+Y+RL+++L G+ A++GPKGFKK TVL+ ++I EYPR Sbjct: 959 IEREEIERLAKDRDDELAILDRNVYARLLDVLAGKKAIAGPKGFKKDTVLTREIIEEYPR 1018 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA+++++ +E+++ QY+ SK LE RF +K+EK+Q GD++ PGV+++VKVFV Sbjct: 1019 SQWWIFAIENDQTMAELEAMRKQYDESKKGLESRFLDKVEKLQRGDELSPGVMKMVKVFV 1078 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL DGTPVDIVLNPLGVPSRMNVGQI E Sbjct: 1079 AVKRKIQPGDKMAGRHGNKGVVSKIVPQEDMPFLADGTPVDIVLNPLGVPSRMNVGQILE 1138 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC GLG+++ +N Y N D PLR L ++ +I DD+ V+ + E Sbjct: 1139 THLGWACAGLGRQVAETVNAYMRNQDSGPLREKLGQIYDA---KAEIDALDDNVVVEIGE 1195 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 + GVP++TPVFDGA E I ML A LD SGQS +YDG TGE FDR VTVGYIYMLK Sbjct: 1196 NLRRGVPIATPVFDGAHEADIVVMLEQAGLDPSGQSTVYDGRTGEAFDRKVTVGYIYMLK 1255 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1256 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1315 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 SDDV GRT+VYESIV G+D FE+G PESFNVLVKEM++L L+++L S Sbjct: 1316 SDDVAGRTKVYESIVRGDDAFESGIPESFNVLVKEMRSLCLNVELTMSNK 1365 >gi|91977663|ref|YP_570322.1| DNA-directed RNA polymerase subunit beta [Rhodopseudomonas palustris BisB5] gi|123721725|sp|Q134R8|RPOB_RHOPS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|91684119|gb|ABE40421.1| DNA-directed RNA polymerase, beta subunit [Rhodopseudomonas palustris BisB5] Length = 1374 Score = 1754 bits (4544), Expect = 0.0, Method: Composition-based stats. Identities = 906/1369 (66%), Positives = 1112/1369 (81%), Gaps = 8/1369 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM+ P R +EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVAEPPGGRDDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FS A+MLEFV YEF+PPK+DVD+C R +TYA PLK+TLRLIVFD+DE TGA+ Sbjct: 60 SVFPISDFSNASMLEFVRYEFEPPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETGAR 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI+Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKILYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P A + G + L+D DTG+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 IKEGWRVPFDA-NRFRGYSTVNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRLSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEIY EAG+ I EKSL+ + +++P+L +D VN YIRN Sbjct: 299 EELVGNYLAEDLVNPKTGEIYAEAGEEITEKSLKALNEEGYKELPLLDIDHVNIGPYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFDS++YDLS VGRVKMNMRL Sbjct: 359 TLSADKNMTREDALFDIYRVMRPGEPPTLDSAQNMFQSLFFDSERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD R +RKEDI+A+IK LV LR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 DLDAPDTHRTLRKEDILAVIKTLVGLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPR 658 PYRKV +G+VT++VVYLSAMEE +AQAN SLD G FT++L+ CR + +L+P Sbjct: 599 PYRKVKEGRVTDEVVYLSAMEEGRYAVAQANISLDAKGRFTDDLIVCRAGGTRDVVLIPA 658 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +++D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME V Sbjct: 659 DQVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGV 718 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQ Sbjct: 719 VARDSGAAIAARRTGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQ 777 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD V + DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDV Sbjct: 778 RPLVKVGDSVAKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDV 837 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 838 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKI 897 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+++ Sbjct: 898 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALA 957 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDEQ ILDRN+Y RL ++L + VSGPKGFKK T ++ ++ EYP+ Sbjct: 958 IEREEIERLAKDRDDEQAILDRNVYGRLADLLDNRQGVSGPKGFKKDTKITRAVLEEYPK 1017 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1018 SQWWLFAAPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFV 1077 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI E Sbjct: 1078 AVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE 1137 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC G+GKKI I+ Y D+ PLR L+K+ G E I +D ++ + Sbjct: 1138 THLGWACAGMGKKIGQTIDAYYQRQDLKPLRETLKKIYGDD---ETIKSLNDGELIELGR 1194 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 GVP++TPVFDGA E I ML++A D SGQS +YDG TG+ FDR VTVGYIYMLK Sbjct: 1195 NLSHGVPIATPVFDGAKEADIEEMLKLAGFDASGQSTVYDGRTGDEFDRKVTVGYIYMLK 1254 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1255 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1314 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 SDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ Sbjct: 1315 SDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSK 1363 >gi|36333339|gb|AAP75727.1| RNA polymerase beta subunit [Afipia birgiae] Length = 1376 Score = 1754 bits (4543), Expect = 0.0, Method: Composition-based stats. Identities = 904/1370 (65%), Positives = 1111/1370 (81%), Gaps = 8/1370 (0%) Query: 1 MAKGV-VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA F Sbjct: 1 MAQSQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPTGGRLDEGLQAVF 60 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 +SVFPI FSG + LEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGA Sbjct: 61 RSVFPINDFSGTSQLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGA 120 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 KS+KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL Sbjct: 121 KSVKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLL 180 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS 239 +A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI Y Sbjct: 181 FAARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKIQYK 240 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 + + W P A D G + L+D D+G+ V+E+GKKLT + L+EKG+K L + Sbjct: 241 RIKEGWRVPFVA-DRFRGYSTINDLIDADSGKVVLEAGKKLTVRTARQLQEKGLKALRFS 299 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 D L G Y+AED+VN +TGEI+ EAG+ I EK L+ + +++P+L +D VN YIR Sbjct: 300 DDELVGNYLAEDLVNPKTGEIHAEAGEEITEKLLKALNEQGYKELPLLDIDHVNIGPYIR 359 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 NTL DKN R+DAL DIYRVMRPG+ T A++MF LFFDS++YDLS VGRVKMNMR Sbjct: 360 NTLNADKNMTREDALFDIYRVMRPGEPPTIDSAQAMFQSLFFDSERYDLSAVGRVKMNMR 419 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 L LD PD +R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GL Sbjct: 420 LELDAPDTMRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGL 479 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 LRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH R Sbjct: 480 LRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKR 539 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+E Sbjct: 540 RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVE 599 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 TPYRKV DG+VT+DVVYLSAMEE +AQAN LD G FT++LV CR AGE + + + Sbjct: 600 TPYRKVKDGRVTDDVVYLSAMEEGRYRVAQANVPLDNKGRFTDDLVICRHAGEVLQITPD 659 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 K+D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VV Sbjct: 660 KVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVV 719 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A+ SGAAI A+R G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQR Sbjct: 720 ARDSGAAIAARRTGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQR 778 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 PLVKVGD+V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVF Sbjct: 779 PLVKVGDQVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVF 838 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDIL GKIT Sbjct: 839 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILCGKIT 898 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++ Sbjct: 899 PKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAI 958 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ERE+IE LA+D+DDEQ ILDRN+Y RL E+L + ++GPKGFKK T ++ ++ EYP+S Sbjct: 959 EREEIERLAKDRDDEQAILDRNVYGRLAELLENRQGIAGPKGFKKDTKITRAVLEEYPKS 1018 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 QWWQFA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA Sbjct: 1019 QWWQFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVA 1078 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ET Sbjct: 1079 VKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILET 1138 Query: 1140 HLGWACVGLGKKIKSLINDYK--ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 HLGWAC GLGK+I ++ Y DI PL+ L+KV G E I +D ++ + Sbjct: 1139 HLGWACAGLGKRIGQAVDAYYGHGKSDIKPLKETLKKVYGDD---EVIKTLNDTELMELG 1195 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 ++GVP++TPVFDGA E I ML +A +++SGQS +YDG TG+ FDR VTVGYIYML Sbjct: 1196 RNLRAGVPIATPVFDGAKEADIEQMLELAGMNKSGQSTVYDGRTGDQFDRNVTVGYIYML 1255 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+ Sbjct: 1256 KLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1315 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ Sbjct: 1316 KSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSK 1365 >gi|260469682|ref|ZP_05813844.1| DNA-directed RNA polymerase, beta subunit [Mesorhizobium opportunistum WSM2075] gi|259028541|gb|EEW29855.1| DNA-directed RNA polymerase, beta subunit [Mesorhizobium opportunistum WSM2075] Length = 1378 Score = 1754 bits (4542), Expect = 0.0, Method: Composition-based stats. Identities = 940/1374 (68%), Positives = 1142/1374 (83%), Gaps = 2/1374 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM++ RP+EGLQA FK Sbjct: 1 MAQTQTFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG++MLEFV YEF+ PKFDVD+C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPISDFSGSSMLEFVKYEFEGPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTLNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKD++H RIDRRRK+PVTS LMALGMD EEILSTFY KI Y + Sbjct: 181 AARVIPYRGSWLDIEFDSKDVVHARIDRRRKIPVTSLLMALGMDGEEILSTFYNKITYKR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P + G K LVD DTGE V+E+GKK+T+ ++L EKG+K + T Sbjct: 241 AGDHWRIPFNVE-RFRGLKAVGDLVDADTGEVVVEAGKKITARQARALGEKGLKAIKATD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AEDIVN TGEI++EAGD IDEK+L+ + + +I +L +D VN AYIRN Sbjct: 300 EDLLGNYLAEDIVNYATGEIFLEAGDEIDEKTLKVLLGTGENEIKVLDIDHVNVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R+DAL DIYRVMRPG+ T AE+MFN LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLNVDKNESRQDALFDIYRVMRPGEPPTLETAEAMFNSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 L D VR +RK+DI+A+++ LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 ELKAEDTVRVLRKDDILAVVRTLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DGK+TNDVVYLSAMEE ++AQAN+ LD++G F +E V CR AGE ++ PRE Sbjct: 600 PYRKIVDGKLTNDVVYLSAMEEAKHHVAQANAELDKNGGFVDEFVICRSAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQMVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDP SGVDIYRLMKFQRSNQNTC+NQRP Sbjct: 720 RDSGAAIGARRGGIVDQVDATRIVIRATED-LDPGKSGVDIYRLMKFQRSNQNTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV++GD V + DIIADGPST+LGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 779 LVRMGDRVNKGDIIADGPSTELGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y+RL ++L G+ A++GPKGFKK + LS D + EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYARLSDVLVGKEAIAGPKGFKKGSTLSKDTLDEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV++EK+Q +E+L+ QY+ SK LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVENEKLQSELEALRGQYDDSKKALEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKMQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+G+KI LI+ YKA GDI PLR LE + E + +YDD+S++R++EQ Sbjct: 1139 LGWACAGMGRKIGELIDTYKAAGDIKPLRKTLESFMPANDRNEPVREYDDESIVRLSEQM 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GV ++TPVFDGA E IN ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 RRGVSIATPVFDGAHEADINIMLEQAGLHTSGQSQLYDGRTGEPFDRKVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++LEN++ ++ Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENTKLDDNPIR 1372 >gi|159184990|ref|NP_354931.2| DNA-directed RNA polymerase subunit beta [Agrobacterium tumefaciens str. C58] gi|41017768|sp|Q8UE08|RPOB_AGRT5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|159140264|gb|AAK87716.2| DNA-directed RNA polymerase beta chain [Agrobacterium tumefaciens str. C58] Length = 1378 Score = 1754 bits (4542), Expect = 0.0, Method: Composition-based stats. Identities = 950/1382 (68%), Positives = 1155/1382 (83%), Gaps = 4/1382 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM++ RP+EGL A FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPIT FSGA+MLEFVSYEF+ PKFDV++C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPITDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQS+YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS LMALGMD EEILSTFY K Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEEILSTFYTKATYER 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P L AKV + ++D DTGE V+E GKKLT L++ L +KG+K L T Sbjct: 241 SGDGWRIPFQPEAL-KNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLVDKGLKALKATD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AEDIVN TGEIY+EAGD IDEK+L I S +IP+L +D VN AYIRN Sbjct: 300 EDLYGNYLAEDIVNYSTGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R++AL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLSADKNQNRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLDAEDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DGKVT DV+YLSAMEE Y+AQAN+ LD +G+FTEE V CR +GE +L PR+ Sbjct: 600 PYRKIIDGKVTTDVIYLSAMEEAKYYVAQANAELDGEGAFTEEFVVCRHSGEVMLAPRDN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 I+ +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGME +VA Sbjct: 660 INLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E LD SGVDIYRL KFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIAARRGGVVDQVDATRIVIRATED-LDAGKSGVDIYRLQKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD + + DIIADGPSTDLGDLALGRN LVAFMPW+GYN+EDS+L+SER+VS+DVFT Sbjct: 779 LVSVGDAISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GT+V+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL+++L G +++GPKGFKK LS+ ++SEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEK Q +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAVEDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VDI LNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 L WAC G+GKKI ++ +Y+ DIS LRS L ++ + ++ E + +DDDS++++AE+ Sbjct: 1139 LAWACAGMGKKIGEMLEEYRKTMDISELRSELTEIYASEANDE-VQRFDDDSLVKLAEEA 1197 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E + +ML+ A L ESGQS+LYDG TGEPFDR VTVGY+YM+KLN Sbjct: 1198 KRGVSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLN 1257 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1258 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1317 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LENS+ +N ++ +++PD Sbjct: 1318 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKIENQSE-DQLPDA 1376 Query: 1381 NK 1382 + Sbjct: 1377 AE 1378 >gi|319783308|ref|YP_004142784.1| DNA-directed RNA polymerase, subunit beta [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169196|gb|ADV12734.1| DNA-directed RNA polymerase, beta subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1378 Score = 1754 bits (4542), Expect = 0.0, Method: Composition-based stats. Identities = 942/1374 (68%), Positives = 1141/1374 (83%), Gaps = 2/1374 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 1 MAQTQTFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVAEPKGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG++MLEFV YEF+ PKFDVD+C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPISDFSGSSMLEFVKYEFEGPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTLNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKD++H RIDRRRK+PVTS LMALGMD EEILSTFY KI Y + Sbjct: 181 AARVIPYRGSWLDIEFDSKDVVHARIDRRRKIPVTSLLMALGMDGEEILSTFYNKITYKR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P + G K LVD DTGE V+E+GKK+T+ ++L EKG+K + T Sbjct: 241 AGDHWRIPFNVE-RFRGLKAVGDLVDADTGEVVVEAGKKITARQARALGEKGLKAIKATD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AEDIVN TGEI++EAGD IDEK+L+ + + +I +L +D VN AYIRN Sbjct: 300 EDLLGNYLAEDIVNYATGEIFLEAGDEIDEKTLKVLLGTGEEEIKVLDIDHVNVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R+DAL DIYRVMRPG+ T AE+MFN LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLNVDKNESRQDALFDIYRVMRPGEPPTLETAEAMFNSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 L D VR +RK+DI+A+++ LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 ELKAEDTVRVLRKDDILAVVRTLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DGK+TNDVVYLSAMEE ++AQAN+ LD++G F +E V CR AGE ++ PRE Sbjct: 600 PYRKIVDGKLTNDVVYLSAMEEAKHHVAQANAELDKNGGFVDEFVICRSAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQMVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDP SGVDIYRLMKFQRSNQNTC+NQRP Sbjct: 720 RDSGAAIGARRGGIVDQVDATRIVIRATED-LDPGKSGVDIYRLMKFQRSNQNTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV++GD V + DIIADGPST+LGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 779 LVRMGDRVNKGDIIADGPSTELGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y+RL ++L G+ A++GPKGFKK + LS D + EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYARLSDVLVGKEAIAGPKGFKKGSTLSKDTLDEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV++EK+Q +E+L+ QY+ SK LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVENEKLQSELEALRGQYDDSKKALEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKMQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+G+KI LI+ YKA GDI PLR LE I E + DYDD+S++R++EQ Sbjct: 1139 LGWACAGMGRKIGELIDTYKAAGDIKPLRKTLESFIPANDRNEPVRDYDDESIVRLSEQM 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GV ++TPVFDGA E IN ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 RRGVSIATPVFDGAHEADINIMLEQAGLHSSGQSQLYDGRTGEPFDRKVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++LEN++ ++ Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENTKLDDNPVR 1372 >gi|222148357|ref|YP_002549314.1| DNA-directed RNA polymerase subunit beta [Agrobacterium vitis S4] gi|254765266|sp|B9JVM8|RPOB_AGRVS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|221735345|gb|ACM36308.1| DNA-directed RNA polymerase beta subunit [Agrobacterium vitis S4] Length = 1379 Score = 1753 bits (4541), Expect = 0.0, Method: Composition-based stats. Identities = 950/1382 (68%), Positives = 1152/1382 (83%), Gaps = 3/1382 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM++ RP+EGLQ FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPEGGRPDEGLQTVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPIT FSGA+MLEFVSYEF+PPKFDVD+C RDLTYA PLK+TLRLIVFD+DE TGA+ Sbjct: 61 SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAR 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQS+YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+H RIDRRRK+PVTS LMALGMD EEILSTFY K Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILSTFYSKSDYKR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G W P A L G+K +VD D+GE V+E+GKKLT LL+ L++KG+K L T Sbjct: 241 DGKGWRVPFQAETL-KGSKTLVDMVDADSGEVVVEAGKKLTPRLLRQLQDKGLKALKATD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AEDIVN TGEIY+EAGD IDEK+L I + +IP+L +D +N AYIRN Sbjct: 300 EDLYGNYLAEDIVNFATGEIYLEAGDEIDEKTLPIILDAGFEEIPVLGIDHINVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R+DAL DIYRVMRPG+ T AE+MFN LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLAADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +L+ D VR +RKEDI+A++K+LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLEVADTVRVLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DG VT DV+YLSAMEE Y+AQAN+ L+ +G F EE V CR AGE +L PR+ Sbjct: 600 PYRKIIDGVVTKDVIYLSAMEEAKYYVAQANAELNAEGKFVEEFVVCRHAGEVMLSPRDT 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 I+ +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGME +VA Sbjct: 660 INLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E LD SGVDIYRL KFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIGARRGGVVDQVDATRIVIRATED-LDAGKSGVDIYRLQKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD + + DIIADGPSTDLGDLALGRN LVAFMPW+GYN+EDS+L+SER+VSEDVFT Sbjct: 779 LVAVGDILNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSEDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE L+N+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALRNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GT+V+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL++ L GQ +++GPKGFKK L++ +ISEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLLDTLRGQVSIAGPKGFKKGVELNNAVISEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEKVQ +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VDIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 L WAC G+G+KI ++ DY+ + DI+ LR+ L + + SH E ++ +DD+S+LR+A+Q Sbjct: 1139 LAWACAGMGRKIGQMLEDYQKHLDITELRTELVDLYASESHDE-VARFDDESLLRLADQA 1197 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 KSG+ ++TPVFDGA E ++ ML A L SGQS+LYDG TGE FDR VTVGY+YM+KLN Sbjct: 1198 KSGLSIATPVFDGAHESDVSEMLTRAGLHTSGQSVLYDGRTGETFDRKVTVGYMYMIKLN 1257 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1258 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1317 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LENS+ + + + +PD Sbjct: 1318 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKLETADTVNPLPDA 1377 Query: 1381 NK 1382 + Sbjct: 1378 AE 1379 >gi|114704476|ref|ZP_01437384.1| DNA-directed RNA polymerase beta subunit [Fulvimarina pelagi HTCC2506] gi|114539261|gb|EAU42381.1| DNA-directed RNA polymerase beta subunit [Fulvimarina pelagi HTCC2506] Length = 1380 Score = 1753 bits (4541), Expect = 0.0, Method: Composition-based stats. Identities = 912/1382 (65%), Positives = 1123/1382 (81%), Gaps = 2/1382 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M++ F+G RVRK FG PE+ ++P+LIEVQKASYD FLM+ R ++GLQA FK Sbjct: 1 MSQTTTFSGRRRVRKVFGHIPEVAEMPNLIEVQKASYDQFLMIEEPEGGRTDDGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI FSG AMLEFV YEF+PPKFDV++C RDLTYAVPLK+TLRLIVFDVDE TG+K Sbjct: 61 SVFPIQDFSGQAMLEFVKYEFEPPKFDVEECRQRDLTYAVPLKVTLRLIVFDVDEDTGSK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+P+MT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPVMTGNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KD++H RIDRRRK+P TS LMALGMD EEILSTFY + + + Sbjct: 181 AGRVIPYRGSWLDIEFDAKDVVHARIDRRRKIPATSLLMALGMDGEEILSTFYNFVEFKK 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W P S + + + LVD D+GE ++E+GKK+T+ + L E+GVK ++ Sbjct: 241 DKKGWRAPFSVE-RVRNQGMITDLVDADSGEVLVEAGKKVTARQARKLAEQGVKAFRVSE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + + G Y+AEDIVN ETGE+Y+EAGD +DEK+L+ + + +L VD VN +YIRN Sbjct: 300 EDIYGNYLAEDIVNFETGEVYLEAGDELDEKTLQVLIDAGYESFQVLDVDHVNIGSYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R+DAL DIYRVMRPG+ T AE+MF LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLAVDKNESRQDALFDIYRVMRPGEPPTMETAEAMFQSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 ++ D VR +RKEDIIA++K LVDLR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DVQAEDTVRTLRKEDIIAVVKTLVDLRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR+V +GKVTN+VVYLSAMEE ++AQAN+ L +D +F E V CR AG+ + PRE Sbjct: 600 PYRRVVEGKVTNEVVYLSAMEESKHHVAQANAILTDDNTFQNEFVVCRHAGDVFMTPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E L+ SGVDIYRLMKFQRSNQNTC+NQRP Sbjct: 720 RDSGAAIGARRTGIVDQVDATRIVIRATED-LEAGKSGVDIYRLMKFQRSNQNTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD V + DI+ADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+VS+DVFT Sbjct: 779 LVAVGDRVEKGDILADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE L+N+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALRNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSSRMPPGTYGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL+E+L G+ ++GPKGFK+ T ++ +++ EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLVEMLSGKQGIAGPKGFKRGTEINQEVMEEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEK+Q +E L+ Y+ +K LE RF +K+EK+Q GD++PPGV++ VKVFVA+ Sbjct: 1019 WWMFAVEDEKLQGELEDLRKVYDEAKKTLEARFMDKVEKVQRGDELPPGVMKQVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPF +DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFTEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI +++ Y+ N D++PLR + ++G EK+ DYDDDSV+ +A+Q Sbjct: 1139 LGWACSGMGKKIGAMLEAYQENNDVAPLRQEISGLLGDNDRNEKVKDYDDDSVITLAKQM 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 GV ++TPVFDGA+E+ I L A L+ SGQ LYDG TGEPFDR VTVGYIYMLKL+ Sbjct: 1199 SKGVSIATPVFDGANEKDIVEWLEGAGLNGSGQVTLYDGRTGEPFDRQVTVGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+D FE+G PESFNVLVKEM++LGL +DL N+ +EE+PD Sbjct: 1319 DVAGRTKVYEAIVRGDDAFESGIPESFNVLVKEMRSLGLDVDLANNPENAGGGVEELPDA 1378 Query: 1381 NK 1382 + Sbjct: 1379 AE 1380 >gi|13470542|ref|NP_102110.1| DNA-directed RNA polymerase subunit beta [Mesorhizobium loti MAFF303099] gi|41017783|sp|Q98N66|RPOB_RHILO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|14021283|dbj|BAB47896.1| RNA polymerase beta subunit [Mesorhizobium loti MAFF303099] Length = 1378 Score = 1753 bits (4540), Expect = 0.0, Method: Composition-based stats. Identities = 944/1374 (68%), Positives = 1142/1374 (83%), Gaps = 2/1374 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM++ RP+EGLQA FK Sbjct: 1 MAQTQTFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG++MLEFV YEF+ PKFDVD+C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPISDFSGSSMLEFVKYEFEGPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTLNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFDSKD++H RIDRRRK+PVTS LMALGMD EEILSTFY KI Y + Sbjct: 181 AARVIPYRGSWLDIEFDSKDVVHARIDRRRKIPVTSLLMALGMDGEEILSTFYNKITYVR 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P + G K LVD DTGE V+E+GKK+T+ + L EKG+K + T Sbjct: 241 AGDHWRIPFNVE-RFRGLKAVGDLVDADTGEIVVEAGKKITARQARQLGEKGLKAIKATD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AEDIVN TGEI++EAGD IDEK+L+ + + ++I +L +D VN AYIRN Sbjct: 300 EDLLGNYLAEDIVNYATGEIFLEAGDEIDEKTLKVLLGTGEQEIKVLDIDHVNVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R+DAL DIYRVMRPG+ T AE+MFN LFFDS++YDLS VGRVKMNMRL Sbjct: 360 TLNVDKNESRQDALFDIYRVMRPGEPPTLETAEAMFNSLFFDSERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 L D VR +RKEDI+A++K LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 ELKAEDTVRVLRKEDILAVVKTLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DGK+TNDVVYLSAMEE ++AQAN+ LD++G F +E V CR AGE ++ PRE Sbjct: 600 PYRKIVDGKLTNDVVYLSAMEEAKHHVAQANAELDKNGGFVDEFVICRSAGEVMMAPREN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQMVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R GIV+QVDA RIVIR+ E LDP SGVDIYRLMKFQRSNQNTC+NQRP Sbjct: 720 RDSGAAIGARRGGIVDQVDATRIVIRATED-LDPGKSGVDIYRLMKFQRSNQNTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV++GD V + DIIADGPST+LGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 779 LVRMGDRVNKGDIIADGPSTELGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y+RL ++L G+ A++GPKGFKK + LS D + EYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYARLSDVLVGKEAIAGPKGFKKGSTLSKDTLDEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV++EK+Q +E+L+ QY+ SK LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWQFAVENEKLQSELEALRGQYDDSKKALEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKMQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI LI+ YKA GDI PLR LE + E I +YDD+S++R++EQ Sbjct: 1139 LGWACAGMGKKIGELIDTYKAAGDIKPLRKTLESFMPANDRNEPIREYDDESIVRLSEQM 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GV ++TPVFDGA E IN ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1199 RRGVSIATPVFDGAHEADINIMLEQAGLHTSGQSQLYDGRTGEPFDRKVTMGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++LEN++ ++ Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENTKLDDAPVR 1372 >gi|85715144|ref|ZP_01046128.1| DNA-directed RNA polymerase beta subunit [Nitrobacter sp. Nb-311A] gi|85698059|gb|EAQ35932.1| DNA-directed RNA polymerase beta subunit [Nitrobacter sp. Nb-311A] Length = 1380 Score = 1753 bits (4539), Expect = 0.0, Method: Composition-based stats. Identities = 907/1371 (66%), Positives = 1108/1371 (80%), Gaps = 12/1371 (0%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F G RVRKFFG E+ +P+LIEVQKASYD FLM++ R +EGLQA FKSVF Sbjct: 3 QQTFTGRKRVRKFFGHIREVAAMPNLIEVQKASYDQFLMVDEPEGGRLDEGLQAVFKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI FSG + LEFV YEF+ PK+DVD+C R +TYA PLK+TLRLIVFD+DE TGAKS+K Sbjct: 63 PINDFSGTSQLEFVRYEFEAPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETGAKSVK 122 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 DIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R Sbjct: 123 DIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAAR 182 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG- 242 +IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+DSEEILSTFY KIVY + Sbjct: 183 VIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDSEEILSTFYKKIVYKRAKS 242 Query: 243 ----DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 D W P G + L+D DTG+ V+E+GKKLT + L+EKG+K L + Sbjct: 243 GGHSDGWRVPYDPV-RFRGYSTLNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRM 301 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + + L G+Y+AED+VN +TGEIY EAG+ I EKSL+ + +++P+L +D VN YI Sbjct: 302 SDEELVGMYLAEDLVNPKTGEIYAEAGEEITEKSLKALNEEGYKELPLLDIDHVNVGPYI 361 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNM Sbjct: 362 RNTLAADKNMTREDALFDIYRVMRPGEPPTLESAQNMFQSLFFDAERYDLSAVGRVKMNM 421 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 RL+LD PD R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+G Sbjct: 422 RLDLDAPDTYRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRVG 481 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LLRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH Sbjct: 482 LLRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHK 541 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ Sbjct: 542 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFV 601 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV DG+VT++VVYLSAMEE ++AQAN LD G FTE+LV CR AGE + V Sbjct: 602 ETPYRKVKDGRVTDEVVYLSAMEEGRYHVAQANLPLDNRGRFTEDLVVCRHAGEVLPVTP 661 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +K+DF+D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME V Sbjct: 662 DKVDFMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGV 721 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R+G+++Q+DA R+VIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQ Sbjct: 722 VARDSGAAIAARRSGVIDQIDATRVVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQ 780 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD VR+ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDV Sbjct: 781 RPLVKVGDTVRKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDV 840 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 841 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKI 900 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+++ Sbjct: 901 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALA 960 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDEQ ILDRN+Y RL ++L + ++GPKGFKK T ++ ++ EYP+ Sbjct: 961 IEREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKGFKKDTKITRSVLEEYPK 1020 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1021 SQWWLFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFV 1080 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI E Sbjct: 1081 AVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE 1140 Query: 1139 THLGWACVGLGKKIKSLINDY--KANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 THLGWAC GLG++I ++ Y + PL+ L+KV G E I +D ++ + Sbjct: 1141 THLGWACAGLGRRIGQAVDAYLASTKQETKPLKETLKKVYGDN---ETIKSLNDHELVEL 1197 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 GVP++TPVFDGA E I ML +A +D SGQS +YDG TG+PFDR VTVGYIYM Sbjct: 1198 GRNLSRGVPIATPVFDGAKETDIEQMLELAGMDRSGQSTVYDGRTGDPFDRKVTVGYIYM 1257 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1258 LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1317 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 +KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ Sbjct: 1318 VKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSK 1368 >gi|325293346|ref|YP_004279210.1| DNA-directed RNA polymerase beta chain protein [Agrobacterium sp. H13-3] gi|325061199|gb|ADY64890.1| DNA-directed RNA polymerase beta chain protein [Agrobacterium sp. H13-3] Length = 1378 Score = 1752 bits (4537), Expect = 0.0, Method: Composition-based stats. Identities = 949/1382 (68%), Positives = 1152/1382 (83%), Gaps = 4/1382 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM++ RP+EGL A FK Sbjct: 1 MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPIT FSGA+MLEFVSYEF+ PKFDV++C RDLTYA PLK+TLRLIVFD+DE TGAK Sbjct: 61 SVFPITDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQS+YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS LMALGMD EEILSTFY K Y + Sbjct: 181 AARVIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEEILSTFYSKASYER 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P L AKV + ++D DTGE V+E GKKLT L++ L +KG+K L T Sbjct: 241 SGDGWRIPFQPETL-KNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLVDKGLKALKATD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G ++AEDIVN TGEIY+EAGD IDEK+L I S +IP+L +D VN AYIRN Sbjct: 300 EDLYGNFLAEDIVNYSTGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN++R++AL DIYRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLHADKNQNRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKEDI+A++K+LV+LR+GKG IDDIDNLGNRRVRSVGE+++NQYRLGLL Sbjct: 420 DLDAEDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ + VN LS ITH RR Sbjct: 480 RMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DGKVT DV+YLSAMEE Y+AQAN+ LD +G+FTEE V CR +GE +L PR+ Sbjct: 600 PYRKIIDGKVTTDVIYLSAMEEAKYYVAQANAELDGEGAFTEEFVVCRHSGEVMLAPRDN 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 I+ +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAPFVGTGME +VA Sbjct: 660 INLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R G+V+QVDA RIVIR+ E LD SGVDIYRL KFQRSNQNTCVNQRP Sbjct: 720 RDSGAAIAARRGGVVDQVDATRIVIRATEE-LDAGKSGVDIYRLQKFQRSNQNTCVNQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD + + DIIADGPSTDLGDLALGRN LVAFMPW+GYN+EDS+L+SER+VS+DVFT Sbjct: 779 LVAVGDIISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITP Sbjct: 839 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL+++L G +++GPKGFKK LS+ ++SEYPRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW FAV+DEK Q +E+L+ QY+ SKS LE RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1019 WWMFAVEDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VDI LNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 L WAC G+GKKI ++ +Y+ DIS LR+ L ++ + SH E + +DD+S++++AE+ Sbjct: 1139 LAWACAGMGKKIGEMLEEYRKTMDISELRTELTEIYASESHDE-VKRFDDESLVKLAEEA 1197 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E + +ML+ A L ESGQS+LYDG TGEPFDR VTVGY+YM+KLN Sbjct: 1198 KRGVSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLN 1257 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1258 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1317 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGLS++LENS+ + +++PD Sbjct: 1318 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKV-ETQPEDQLPDA 1376 Query: 1381 NK 1382 + Sbjct: 1377 AE 1378 >gi|36333337|gb|AAP75726.1| RNA polymerase beta subunit [Afipia massiliensis] Length = 1375 Score = 1751 bits (4535), Expect = 0.0, Method: Composition-based stats. Identities = 905/1370 (66%), Positives = 1113/1370 (81%), Gaps = 8/1370 (0%) Query: 1 MAKGV-VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA F Sbjct: 1 MAQSQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPTGGRLDEGLQAVF 60 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 +SVFPI FSG + LEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGA Sbjct: 61 RSVFPINDFSGTSQLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGA 120 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 KS+KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL Sbjct: 121 KSVKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLL 180 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS 239 +A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI Y Sbjct: 181 FAARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKIQYK 240 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 + + W P A D G + L+D D+G+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 241 RIKEGWRVPFVA-DRFRGYSTINDLIDADSGKVVLEAGKKLTVRTARQLQEKGLKALRLS 299 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 D L Y+AED+VN +TGEI+ EAG+ I EK L+ + +++PIL +D VN YIR Sbjct: 300 DDELITNYLAEDLVNPKTGEIHAEAGEEITEKLLKALNEQGYKELPILDIDHVNIGPYIR 359 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 NTL DKN R+DAL DIYRVMRPG+ T A++MF LFFDS++YDLS VGRVKMNMR Sbjct: 360 NTLNADKNMTREDALFDIYRVMRPGEPPTIDSAQAMFQSLFFDSERYDLSAVGRVKMNMR 419 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 L LD PD +R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GL Sbjct: 420 LELDAPDTMRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGL 479 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 LRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH R Sbjct: 480 LRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKR 539 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+E Sbjct: 540 RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVE 599 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 TPYRKV DG+VT+DVVYLSAMEE +AQAN LD G FT++LV CR AGE + + + Sbjct: 600 TPYRKVKDGRVTDDVVYLSAMEEGRYRVAQANVPLDNKGRFTDDLVICRHAGEVLQITPD 659 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 K+D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VV Sbjct: 660 KVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVV 719 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A+ SGAAI A+R G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQR Sbjct: 720 ARDSGAAIAARRTGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQR 778 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 PLVKVGD+VR+ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVF Sbjct: 779 PLVKVGDQVRKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVF 838 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDIL GKIT Sbjct: 839 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILCGKIT 898 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++ Sbjct: 899 PKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAI 958 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ERE+IE LA+D+DDEQ ILDRN+Y RL E+L + ++GPKGFKK T ++ ++ EYP+S Sbjct: 959 EREEIERLAKDRDDEQAILDRNVYGRLAELLENRQGIAGPKGFKKDTKITRAVLEEYPKS 1018 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 QWWQFA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA Sbjct: 1019 QWWQFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVA 1078 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ET Sbjct: 1079 VKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILET 1138 Query: 1140 HLGWACVGLGKKIKSLINDYK--ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 HLGWAC GLGK+I ++ Y DI PL+ L+KV G E I +D ++ + Sbjct: 1139 HLGWACAGLGKRIGQAVDAYYGHGKSDIKPLKETLKKVYGDD---EVIKTLNDAELMELG 1195 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 + ++GVP++TPVFDGA E+ I ML +A +++SGQS +YDG TG+ FDR VTVGYIYML Sbjct: 1196 KNLRAGVPIATPVFDGAKEKDIEDMLELAGMNKSGQSTVYDGRTGDQFDRNVTVGYIYML 1255 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+ Sbjct: 1256 KLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1315 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ Sbjct: 1316 KSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSK 1365 >gi|52082901|gb|AAU26030.1| RNA polymerase beta subunit [Afipia sp. SP17] Length = 1376 Score = 1751 bits (4535), Expect = 0.0, Method: Composition-based stats. Identities = 902/1381 (65%), Positives = 1111/1381 (80%), Gaps = 8/1381 (0%) Query: 1 MAKGV-VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA F Sbjct: 1 MAQSQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPAGGRLDEGLQAVF 60 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 +SVFPI FSG + LEFV YEF+ PK+DVD+C R +T+A PLK+TLRLIVFD+DE TGA Sbjct: 61 RSVFPINDFSGTSQLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGA 120 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 KS+KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL Sbjct: 121 KSVKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLL 180 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS 239 +A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI Y Sbjct: 181 FAARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKIQYK 240 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 + + W P A D G + L+D D+G+ V+E+GKKLT + L+EKG+K L + Sbjct: 241 RIKEGWRVPFVA-DRFRGYSTINDLIDADSGKVVLEAGKKLTVRTARQLQEKGLKALRFS 299 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + + Y+AED+VN +TGEI+ EAG+ I EK L+ + +++PIL +D VN YIR Sbjct: 300 DEEVVSNYLAEDLVNPKTGEIHAEAGEEITEKLLKALNEQGYKELPILDIDHVNIGPYIR 359 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 NTL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNMR Sbjct: 360 NTLSADKNMTREDALFDIYRVMRPGEPPTIDSAQAMFQSLFFDAERYDLSAVGRVKMNMR 419 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 L LD PD +R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GL Sbjct: 420 LELDAPDTMRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGL 479 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 LRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH R Sbjct: 480 LRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKR 539 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+E Sbjct: 540 RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVE 599 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 TPYRKV DG+VT+DVVYLSAMEE +AQAN LD G FT++LV CR AGE + +P + Sbjct: 600 TPYRKVKDGRVTDDVVYLSAMEEGRYRVAQANVPLDAKGRFTDDLVICRHAGEVLQLPPD 659 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 ++D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VV Sbjct: 660 RVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVV 719 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A+ SGAAI A+R G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQR Sbjct: 720 ARDSGAAIAARRTGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQR 778 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 PLVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVF Sbjct: 779 PLVKVGDSVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVF 838 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDIL GKIT Sbjct: 839 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILCGKIT 898 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER++++ Sbjct: 899 PKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAI 958 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ERE+IE LA+D+DDEQ ILDRN+Y RL ++L + ++GPKGFKK T ++ ++ EYP+S Sbjct: 959 EREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKGFKKDTKITRAVLEEYPKS 1018 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 QWWQFA ++K+ +E++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA Sbjct: 1019 QWWQFASPNDKLMAEIEAMHKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVA 1078 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ET Sbjct: 1079 VKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILET 1138 Query: 1140 HLGWACVGLGKKIKSLINDYK--ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 HLGWAC GLGK+I ++ Y DI PL+ L+KV G E I +D ++ + Sbjct: 1139 HLGWACAGLGKRIGQAVDAYYGHGKSDIKPLKETLKKVYGDD---EVIKTLNDTELMELG 1195 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 ++GVP++TPVFDGA E I ML MA +++SGQS +YDG TG+ FDR VTVGYIYML Sbjct: 1196 RNLRAGVPIATPVFDGAKEADIEQMLEMAGMNKSGQSTVYDGRTGDQFDRNVTVGYIYML 1255 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+ Sbjct: 1256 KLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1315 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEI 1377 KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ + E Sbjct: 1316 KSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKLGPTPTSEAA 1375 Query: 1378 P 1378 Sbjct: 1376 E 1376 >gi|188583688|ref|YP_001927133.1| DNA-directed RNA polymerase subunit beta [Methylobacterium populi BJ001] gi|226699421|sp|B1ZGS0|RPOB_METPB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|179347186|gb|ACB82598.1| DNA-directed RNA polymerase, beta subunit [Methylobacterium populi BJ001] Length = 1375 Score = 1751 bits (4535), Expect = 0.0, Method: Composition-based stats. Identities = 898/1378 (65%), Positives = 1114/1378 (80%), Gaps = 8/1378 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R+RKFFGK E+ ++P+LIEVQKASYD FLM++ R +EGLQ+ FK Sbjct: 1 MANTLV--GRKRIRKFFGKIREVAEMPNLIEVQKASYDQFLMVDEPEGGRADEGLQSVFK 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ F+ A+LEFV Y F+ PK+DVD+C R +T+A PLK+TLRLIVFDVD TGAK Sbjct: 59 SVFPISDFASTALLEFVRYTFEQPKYDVDECRQRGITFAAPLKVTLRLIVFDVDPDTGAK 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 119 SVKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A RIIP +G W+D+EFD+KDI+HVRIDR+RK+PVTS L ALG+D EEILSTFY ++ Y + Sbjct: 179 AARIIPYRGSWLDVEFDAKDIVHVRIDRKRKLPVTSLLFALGLDGEEILSTFYNRVSYER 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G W P A L G K S L+D D+GE V+E+GKKL + + + EKG KFL T Sbjct: 239 DGADWRVPFDAERL-KGFKASVDLIDADSGEVVLEAGKKLNARNARLIGEKGTKFLKATD 297 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEI+ EAGD I EK L+ + + +IP+L +D VN YIRN Sbjct: 298 EDLVGQYIAEDLVNAKTGEIWAEAGDEISEKLLKALDDVGVTEIPVLDIDHVNVGPYIRN 357 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+ AL DIYRVMRPG+ T AE+MF+ LFFD+++YDLS VGRVKMNMRL Sbjct: 358 TLAVDKNSAREGALFDIYRVMRPGEPPTLDTAEAMFHSLFFDAERYDLSAVGRVKMNMRL 417 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +R+ED++A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYRLGLL Sbjct: 418 DLDAADTVRTLRREDMLAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLL 477 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RR Sbjct: 478 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRR 537 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIET Sbjct: 538 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIET 597 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 P+R+V DG VT++V YLSAMEE Y+AQAN+ +D T++LV CR AGE I+V ++ Sbjct: 598 PFRRVKDGVVTDEVAYLSAMEEAKYYVAQANAGMDAARKLTDDLVVCRRAGEVIVVAPDR 657 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++A+APFVGTGME+VVA Sbjct: 658 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAVVA 717 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R+GIV+QVDA RIVIR+ E DP+ GVDIYRL KFQRSNQ+TC+ Q+P Sbjct: 718 RDSGAAIAARRSGIVDQVDATRIVIRATEET-DPTKPGVDIYRLQKFQRSNQSTCITQKP 776 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VG+ V++ +IIADGPST+ G+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVFT Sbjct: 777 LVRVGEPVKKGEIIADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFT 836 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+ GDILVGKITP Sbjct: 837 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHAGDILVGKITP 896 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV+GT+V+VR+FNRHG+DK+ER+ ++E Sbjct: 897 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDERAQAIE 956 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN Y+RL E+L GQ+ ++GPKGF+K T L+ + ISEYPRSQ Sbjct: 957 REEIERLAKDRDDEQTILDRNTYARLAEVLIGQSPIAGPKGFRKDTTLTREGISEYPRSQ 1016 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV D+++ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1017 WWQFAVVDDRLMTEIEAMQKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1076 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1077 KRKIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1136 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG+K+ ++ Y N DI+PLR+ +E + + D+++ Sbjct: 1137 LGWAAAGLGRKVSKAVDAYLKNQDIAPLRAEMEAIYSPSE----LEGLSDEALAEAGNNV 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++TPVF+GA E I +ML MA LD S QS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1193 RRGVPMATPVFNGAKEADIETMLEMAGLDRSAQSTLYDGRTGEPFDRKVTMGYIYMLKLH 1252 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1253 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1312 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L NS+ + + E P Sbjct: 1313 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELTNSKQQAANDQIEPP 1370 >gi|163853415|ref|YP_001641458.1| DNA-directed RNA polymerase subunit beta [Methylobacterium extorquens PA1] gi|218532274|ref|YP_002423090.1| DNA-directed RNA polymerase subunit beta [Methylobacterium chloromethanicum CM4] gi|254563344|ref|YP_003070439.1| RNA polymerase subunit beta [Methylobacterium extorquens DM4] gi|226699419|sp|A9W8N8|RPOB_METEP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765295|sp|B7KN45|RPOB_METC4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|163665020|gb|ABY32387.1| DNA-directed RNA polymerase, beta subunit [Methylobacterium extorquens PA1] gi|218524577|gb|ACK85162.1| DNA-directed RNA polymerase, beta subunit [Methylobacterium chloromethanicum CM4] gi|254270622|emb|CAX26625.1| RNA polymerase, beta subunit [Methylobacterium extorquens DM4] Length = 1376 Score = 1749 bits (4531), Expect = 0.0, Method: Composition-based stats. Identities = 898/1384 (64%), Positives = 1118/1384 (80%), Gaps = 8/1384 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R+RKFFGK E+ ++P+LIEVQKASYD FLM++ R +EGLQ+ FK Sbjct: 1 MANTLV--GRKRIRKFFGKIREVAEMPNLIEVQKASYDQFLMVDEPEGGRADEGLQSVFK 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ F+ A+LEFV Y F+ PK+DVD+C R +T+A PLK+TLRLIVFDVD TGAK Sbjct: 59 SVFPISDFASTALLEFVRYTFEQPKYDVDECRQRGITFAAPLKVTLRLIVFDVDPDTGAK 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 119 SVKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A RIIP +G W+D+EFD+KDI+HVRIDR+RK+PVTS L ALG+D EEILSTFY ++ Y + Sbjct: 179 AARIIPYRGSWLDVEFDAKDIVHVRIDRKRKLPVTSLLFALGLDGEEILSTFYNRVAYQR 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G W P A L G K S L+D D+GE V+E+GKKL + + + EKG KFL Sbjct: 239 DGADWRVPFDAERL-KGFKASVDLIDADSGEVVLEAGKKLNARNARLIGEKGTKFLRAAD 297 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEI+ EAGD I EK L+ + + ++P+L +D VN YIRN Sbjct: 298 EDLIGQYIAEDLVNMKTGEIWAEAGDEISEKLLKSLDDVGVTELPVLDIDHVNVGPYIRN 357 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+ AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 358 TLAVDKNSAREGALFDIYRVMRPGEPPTLDTAEAMFHSLFFDSERYDLSAVGRVKMNMRL 417 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +R+ED++A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYRLGLL Sbjct: 418 DLDAADTVRTLRREDMLAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLL 477 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RR Sbjct: 478 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRR 537 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIET Sbjct: 538 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIET 597 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 P+R+V DG VT++V YLSAMEE Y+AQAN+ +DE T++LV CR AGE I+V ++ Sbjct: 598 PFRRVKDGVVTDEVAYLSAMEEAKYYVAQANAGMDEGRKLTDDLVVCRRAGEVIVVAPDR 657 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++A+APFVGTGME+VVA Sbjct: 658 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAVVA 717 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R+GIV+QVDA RIVIR+ E DP+ GVDIYRL KFQRSNQ+TC+ Q+P Sbjct: 718 RDSGAAIAARRSGIVDQVDATRIVIRASEET-DPTKPGVDIYRLQKFQRSNQSTCITQKP 776 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VG+ V++ +IIADGPST+ G+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVFT Sbjct: 777 LVRVGEPVKKGEIIADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFT 836 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+ GDILVGKITP Sbjct: 837 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHAGDILVGKITP 896 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV+GT+V+VR+FNRHG+DK+ER+ ++E Sbjct: 897 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDERAQAIE 956 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN Y+RL E+L GQ+ ++GPKGF+K T L+ ++ISEYPRSQ Sbjct: 957 REEIERLAKDRDDEQTILDRNTYARLAEVLIGQSPIAGPKGFRKDTTLTREIISEYPRSQ 1016 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV D+++ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1017 WWQFAVVDDRMMTEIEAMQKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1076 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1077 KRKIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1136 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG+K+ ++ Y N DI+PLR+ +E + + D+++ Sbjct: 1137 LGWAAAGLGRKVSKAVDAYLKNQDIAPLRAEMEAIYSPSE----LEGLSDEALAEAGNNV 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++TPVF+GA E I +ML MA LD S QS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1193 RRGVPMATPVFNGAKEADIETMLEMAGLDRSAQSTLYDGRTGEPFDRKVTMGYIYMLKLH 1252 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1253 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1312 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L +S+ + +A + P Sbjct: 1313 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELTSSKQQQAANDQIEPPA 1372 Query: 1381 NKCE 1384 + E Sbjct: 1373 DAAE 1376 >gi|75675542|ref|YP_317963.1| DNA-directed RNA polymerase subunit beta [Nitrobacter winogradskyi Nb-255] gi|88909623|sp|Q3SSY0|RPOB_NITWN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|74420412|gb|ABA04611.1| DNA-directed RNA polymerase subunit beta [Nitrobacter winogradskyi Nb-255] Length = 1380 Score = 1749 bits (4530), Expect = 0.0, Method: Composition-based stats. Identities = 906/1371 (66%), Positives = 1112/1371 (81%), Gaps = 12/1371 (0%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA FKSVF Sbjct: 3 QQTFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVDEPEGGRLDEGLQAVFKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI FSGA+ LEFV YEF+ PK+DVD+C R +TYA PLK+TLRLIVFD+DE TGAKS+K Sbjct: 63 PINDFSGASQLEFVRYEFEAPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETGAKSVK 122 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 DIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R Sbjct: 123 DIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAAR 182 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG- 242 +IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI+Y + Sbjct: 183 VIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKIIYKRAKS 242 Query: 243 ----DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 D W P G + L+D DTG+ V+E+GKKLT + L+EKG+K L + Sbjct: 243 GGGSDGWRVPYDPV-RFRGYSTLNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRM 301 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + + L G+Y+AED+VN +TGEIY EAG+ I EKSL+ + +++P+L +D VN YI Sbjct: 302 SDEELVGMYLAEDLVNPKTGEIYAEAGEEITEKSLKALNEEGYKELPLLDIDHVNVGPYI 361 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL DKN R+DAL DIYRVMRPG+ T A++MF LFFD+++YDLS VGRVKMNM Sbjct: 362 RNTLAADKNMTREDALFDIYRVMRPGEPPTLESAQNMFQSLFFDAERYDLSAVGRVKMNM 421 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 RL+LD PD R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+G Sbjct: 422 RLDLDAPDTYRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRVG 481 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LLRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH Sbjct: 482 LLRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHK 541 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ Sbjct: 542 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFV 601 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV DG+VT++VVYLSAMEE ++AQAN LD G FTE+LV CR AGE + V Sbjct: 602 ETPYRKVKDGRVTDEVVYLSAMEEGRYHVAQANLPLDARGRFTEDLVVCRHAGEVLPVTP 661 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +K+DF+D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME V Sbjct: 662 DKVDFMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGV 721 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R+G+++Q+DA R+VIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQ Sbjct: 722 VARDSGAAIAARRSGVIDQIDATRVVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQ 780 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD VR+ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDV Sbjct: 781 RPLVKVGDIVRKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDV 840 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LK++DE GI+ +GAEV GDILVGKI Sbjct: 841 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKSLDEAGIVYIGAEVRAGDILVGKI 900 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+++ Sbjct: 901 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALA 960 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDEQ ILDRN+Y RL ++L + ++GPKGFKK T ++ ++ EYP+ Sbjct: 961 IEREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKGFKKDTKITRAVLDEYPK 1020 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1021 SQWWLFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFV 1080 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI E Sbjct: 1081 AVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE 1140 Query: 1139 THLGWACVGLGKKIKSLINDY--KANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 THLGWAC GLG++I ++ Y A + PL+ L+KV G E I +D ++ + Sbjct: 1141 THLGWACAGLGRRIGQAVDAYLASAKQETKPLKETLKKVYGDN---ETIKSLEDHELVEL 1197 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 + GVP++TPVFDGA E I ML +A +D+SGQS +YDG TG+PFDR VTVGYIYM Sbjct: 1198 GRNLRRGVPIATPVFDGAKEADIEQMLELAGMDKSGQSTVYDGRTGDPFDRKVTVGYIYM 1257 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1258 LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1317 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 +KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ Sbjct: 1318 VKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSK 1368 >gi|288957413|ref|YP_003447754.1| DNA-directed RNA polymerase subunit beta [Azospirillum sp. B510] gi|288909721|dbj|BAI71210.1| DNA-directed RNA polymerase subunit beta [Azospirillum sp. B510] Length = 1397 Score = 1748 bits (4527), Expect = 0.0, Method: Composition-based stats. Identities = 853/1394 (61%), Positives = 1070/1394 (76%), Gaps = 35/1394 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G RVRK FG+ PE+ +P+LIEVQ++SYDHFL M++AP++R N GLQ FKSV Sbjct: 1 MAKSFTGRKRVRKSFGRIPEVTQMPNLIEVQRSSYDHFLQMDVAPEKRANLGLQEVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI FS A+L+FV YE + PK+DV++C R +T+A PLK+TLRL VFDV+E TG +SI Sbjct: 61 FPIKDFSDRAVLDFVKYELEQPKYDVEECQQRGMTFAAPLKVTLRLSVFDVEEDTGLRSI 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DIKEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 121 RDIKEQDVYMGDMPLMTANGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHASGKYLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL--------------------- 221 R+IP +G W+D EFD+KD+++VRIDRRRK+P T+ L AL Sbjct: 181 RVIPYRGSWLDFEFDAKDLVYVRIDRRRKLPATTLLFALDGADTEALRAERKANRKDLLP 240 Query: 222 ----GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESG 277 GM EEIL+ FY I YS+ W P SA M G K+ S LVD TG V E+G Sbjct: 241 YEAQGMSKEEILNYFYDTITYSRSAGGWKTPFSAE-RMKGVKLVSDLVDAATGAIVAEAG 299 Query: 278 KKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIF 337 K+T +K L E G+ ++++ L G Y+A DI+N TGE+ EAGD + L+++ Sbjct: 300 AKMTPRAIKKLVEAGLTEQQVSTEELTGRYLAVDIINERTGEVLFEAGDELSASDLDKLE 359 Query: 338 HSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFN 397 + + ++P+L +D +N AYIRNT+ D+N R+DAL+DIYRVMRPG+ T AE++F+ Sbjct: 360 KTGVDELPVLAIDHLNVGAYIRNTMNADRNASREDALIDIYRVMRPGEPPTLESAEALFS 419 Query: 398 FLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDID 457 LFFDS++YDLS VGRVKMN RLN T D +R +RKEDI+ I+K+LV+L++G+G IDDID Sbjct: 420 GLFFDSERYDLSAVGRVKMNARLNFQTDDQMRVLRKEDILEILKVLVNLKDGRGEIDDID 479 Query: 458 NLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFF 517 +LGNRRVRSVGE+++NQYR+GLLRMER+I+ER+SSV+ID+VMP DLINAKP +AV EFF Sbjct: 480 HLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVEIDTVMPHDLINAKPAAAAVREFF 539 Query: 518 CSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEG 577 SSQLSQ + N LS ITH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG Sbjct: 540 GSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEG 599 Query: 578 HNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDED 637 NIGL++SL ++ARVN YGFIE+PYRKV DGKVTN+VVYLSAMEE +AQAN+ L+ D Sbjct: 600 PNIGLINSLATYARVNQYGFIESPYRKVIDGKVTNEVVYLSAMEEGRYVVAQANAELNPD 659 Query: 638 GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQ 697 F +LV CR GE ++ E ID ID SPKQ+VS+AA+LIPFLENDD+NR LMG NMQ Sbjct: 660 NGFAADLVSCRQGGEYLMFRPEAIDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQ 719 Query: 698 RQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTS 757 RQAVPL+KA+AP VGTGME+ VA+ SG IVAKR+GIV+QVDA RIV+R+ + D + Sbjct: 720 RQAVPLVKADAPLVGTGMEATVARDSGVTIVAKRSGIVDQVDATRIVVRATD-SSDSTAP 778 Query: 758 GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMP 817 GVDIY L+KFQRSNQNTC+ QRPLVKVGD V DI+ADGPSTDLG+LALGRN+LVAFMP Sbjct: 779 GVDIYNLLKFQRSNQNTCITQRPLVKVGDRVNAGDIVADGPSTDLGELALGRNVLVAFMP 838 Query: 818 WHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNID 877 W+GYNFEDS+LI+ER+V +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE LKN+D Sbjct: 839 WNGYNFEDSILINERIVKDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNLD 898 Query: 878 ECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSG 937 E GI+ +GAEV PGDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV G Sbjct: 899 EAGIVYIGAEVRPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVVG 958 Query: 938 TVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 T+V+VR+F+R G+DK+ER++++ER +IE LA+D+DDE+ IL+R+ Y+RL E+L GQ A S Sbjct: 959 TIVEVRVFSRRGVDKDERALAIERAEIEKLAKDRDDERGILERSFYTRLKEVLIGQTAQS 1018 Query: 998 GPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKI 1057 GPKG K TVL+ ++++ + W Q A+ DE+V VE+L ++ S L+DRF+NK+ Sbjct: 1019 GPKGMKGGTVLTDEVLAGLSKGLWRQIAIADEQVMETVENLAKVFDDSIKALQDRFENKV 1078 Query: 1058 EKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTP 1117 +K+Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG+VSRI+P EDMP+L+DGTP Sbjct: 1079 DKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRIIPQEDMPYLEDGTP 1138 Query: 1118 VDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK--------ANGDISPLR 1169 VD+VLNPLGVPSRMNVGQI ETHLGWA GLGK+I ++ Y+ + LR Sbjct: 1139 VDLVLNPLGVPSRMNVGQILETHLGWAASGLGKQIGRAVDQYRLAIRQKAEGAPQLEALR 1198 Query: 1170 SFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLD 1229 L+ G ++ E I+D D +L + + GVP +TPVFDGA EE I L A D Sbjct: 1199 GTLKSAYGEVTYNEDIADMTDGELLELGGNLRKGVPFATPVFDGAREEDICVHLERAGFD 1258 Query: 1230 ESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNR 1289 SGQS L DG TGE FDR VTVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ Sbjct: 1259 RSGQSTLVDGRTGETFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQF 1318 Query: 1290 GGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV G+D FE G PESFNV Sbjct: 1319 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDNFEAGIPESFNV 1378 Query: 1350 LVKEMQALGLSIDL 1363 LVKE+++LGL+++L Sbjct: 1379 LVKELRSLGLNVEL 1392 >gi|90417770|ref|ZP_01225682.1| DNA-directed RNA polymerase beta chain [Aurantimonas manganoxydans SI85-9A1] gi|90337442|gb|EAS51093.1| DNA-directed RNA polymerase beta chain [Aurantimonas manganoxydans SI85-9A1] Length = 1389 Score = 1747 bits (4525), Expect = 0.0, Method: Composition-based stats. Identities = 919/1392 (66%), Positives = 1118/1392 (80%), Gaps = 13/1392 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M++ F+G RVRKFFG PE+ ++P+LIEVQKASYD FLM++ + R +EGLQA FK Sbjct: 1 MSQTTTFSGRRRVRKFFGSIPEVAEMPNLIEVQKASYDQFLMVDEPVNGRLDEGLQAVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG AMLEFV YEF+ PKFDV++C RDLTYA PLK+TLRLIVFDVDE TG+K Sbjct: 61 SVFPISDFSGQAMLEFVKYEFEQPKFDVEECRQRDLTYAAPLKVTLRLIVFDVDEDTGSK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+ Sbjct: 121 SIKDIKEQDVYMGDMPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KD++H RIDRRRK+PVTS LMALGMD EEILSTFY + + + Sbjct: 181 AARVIPYRGSWLDIEFDAKDVVHARIDRRRKIPVTSLLMALGMDGEEILSTFYGTVKFEK 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P S + G L+D D+GE ++E+GKK+T+ + ++EKGVK L T Sbjct: 241 DKNGWRVPFSVE-RVRGQGAVVDLIDADSGEVLVEAGKKVTARQARQMQEKGVKALRATE 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDV----------IDEKSLEEIFHSEIRDIPILYVD 350 D L G Y+AEDIVN ETGEIY+EAG + SL ++ ++ + +L +D Sbjct: 300 DDLVGSYIAEDIVNPETGEIYLEAGQELEMTVDAKTGERKGSLIDLINAGYDEFTVLDID 359 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 VN YIRNTL DKN+ R+DAL DIYRVMRPG+ T AE+MF LFFDS++YDLS Sbjct: 360 HVNVGGYIRNTLAVDKNEGRQDALFDIYRVMRPGEPPTMETAEAMFQSLFFDSERYDLSA 419 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VGRVKMNMRL++D D VR +RKEDI+A+++ LVDLR+GKG IDDIDNLGNRRVRSVGE+ Sbjct: 420 VGRVKMNMRLDVDAEDTVRVLRKEDILAVVRTLVDLRDGKGEIDDIDNLGNRRVRSVGEL 479 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 ++NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 480 MENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTN 539 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ITH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FA Sbjct: 540 PLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFA 599 Query: 591 RVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA 650 RVN YGFIE+PYRKV DG VT+DVVYLSAMEE ++AQAN+ L +D F E V CR Sbjct: 600 RVNKYGFIESPYRKVVDGVVTHDVVYLSAMEESKHHVAQANAILTDDNQFQNEFVVCRHQ 659 Query: 651 GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF 710 G+ + PR+ +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPF Sbjct: 660 GDVFMTPRDNVDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPF 719 Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRS 770 VGTGME +VA+ SGAAI A+R GIV+QVDA RIVIR+ E L+ SGVDIYRLMKFQRS Sbjct: 720 VGTGMEPIVARDSGAAIGARRTGIVDQVDATRIVIRATED-LEAGKSGVDIYRLMKFQRS 778 Query: 771 NQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS 830 NQNTC+NQRPLV VGD V + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+S Sbjct: 779 NQNTCINQRPLVAVGDRVEKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLS 838 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 ER+V++DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV P Sbjct: 839 ERIVADDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQP 898 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 GDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTS R+P G GTVV+VR+FNRHG+ Sbjct: 899 GDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSNRMPPGAYGTVVEVRVFNRHGV 958 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSS 1010 +K+ER++++ERE+IE LA+D+DDEQ ILDRN+Y RL+E+L G+ AV+ PKGFKK +V+++ Sbjct: 959 EKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLVEMLDGKAAVAAPKGFKKGSVITA 1018 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 + + EYPRSQWW FAV+DEK Q +E L+ Y+ +K LE RF +K+EK+Q GD++PPGV Sbjct: 1019 EAMGEYPRSQWWMFAVEDEKTQAALEDLRNVYDEAKKTLEQRFMDKVEKVQRGDELPPGV 1078 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 ++ VKVFVA+KR IQ GDKMAGRHGNKG+VSRILP EDMPF DGT VDIVLNPLGVPSR Sbjct: 1079 MKQVKVFVAVKRKIQPGDKMAGRHGNKGVVSRILPVEDMPFNADGTHVDIVLNPLGVPSR 1138 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MNVGQI ETHLGWAC G+G+KI ++ Y+ + D+SPLR + ++G EK+ YDD Sbjct: 1139 MNVGQILETHLGWACAGMGRKIGDMLEAYQTSQDVSPLRDEIAGLLGDSDRNEKVKTYDD 1198 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 SVL +A+Q K GV ++TPVFDGA E+ I ML A L+ SGQ LYDG TGE FDR VT Sbjct: 1199 ASVLTLAKQMKRGVSIATPVFDGAVEQDIVEMLERAGLNGSGQVTLYDGRTGEAFDRQVT 1258 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1259 VGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1318 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQEMLT+KSDDV GRT+VYESIV G+D FE+G PESFNVLVKEM++LGL +DL NS Sbjct: 1319 LQEMLTVKSDDVAGRTKVYESIVRGDDAFESGIPESFNVLVKEMRSLGLDVDLANS-AAE 1377 Query: 1371 SAKMEEIPDFNK 1382 ++PD + Sbjct: 1378 LPAPADLPDAAE 1389 >gi|36333363|gb|AAP75739.1| RNA polymerase beta subunit [Bosea minatitlanensis] Length = 1373 Score = 1746 bits (4523), Expect = 0.0, Method: Composition-based stats. Identities = 895/1365 (65%), Positives = 1103/1365 (80%), Gaps = 5/1365 (0%) Query: 9 GLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF 68 G RVRKFFGK E+ ++P+LIEVQKASYD FLM++ RP+EGLQ+ FKSVFPI F Sbjct: 7 GRRRVRKFFGKLKEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLQSVFKSVFPIGDF 66 Query: 69 SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 SGA++LEFV Y F+PPK+DVD+C R +T++ PLK+TLRLIVFD+D T AKS+KDIKEQ Sbjct: 67 SGASLLEFVKYTFEPPKYDVDECRQRGMTFSAPLKVTLRLIVFDIDPDTQAKSVKDIKEQ 126 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A RIIP + Sbjct: 127 DVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARIIPYR 186 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+DIEFD+KDI++ RIDR+RK+PVTS L ALGMD EEILS FY I Y++ W P Sbjct: 187 GSWLDIEFDAKDIVYARIDRKRKIPVTSLLFALGMDGEEILSRFYNTITYTKDAKGWRVP 246 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 A M G K + L+D DTGE V+E+GKKL + + L EKG+KFL + L Y+ Sbjct: 247 YDAE-RMKGFKATEDLIDADTGEVVVEAGKKLVARTARQLAEKGLKFLRAQDEDLYTQYI 305 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AED+VN TGE+Y EAG+ I EK L+++ +IP+L +D + YIRNTL DKN Sbjct: 306 AEDLVNPATGEVYAEAGEEITEKLLKQLVDDGFDEIPVLDIDHITVGPYIRNTLNVDKNS 365 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 R++AL DIYRVMRPG+ T AE+MF LFFD ++YDLS VGRVKMNMRL+LD D V Sbjct: 366 RREEALFDIYRVMRPGEPPTLETAENMFQSLFFDPERYDLSAVGRVKMNMRLDLDAEDTV 425 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 R +RKEDI A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYRLGLLRMER+IKE Sbjct: 426 RILRKEDIFAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLLRMERAIKE 485 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RRLSALG GG Sbjct: 486 RMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGG 545 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 + R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYR++ DG Sbjct: 546 LTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRRIRDG 605 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 KVT++V+YLSAMEE +AQAN+++D+DG T++LV CR AGE ++ P +K+DF D SP Sbjct: 606 KVTDEVIYLSAMEEAKYNVAQANAAVDKDGRLTDDLVVCRRAGEVVVTPVDKVDFQDVSP 665 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 KQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VVA+ SGAAI Sbjct: 666 KQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVARDSGAAIA 725 Query: 729 AKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEV 788 A+R G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQRPLVKVGD V Sbjct: 726 ARRTGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQRPLVKVGDSV 784 Query: 789 RRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFE 848 ++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVFTSIHIEEFE Sbjct: 785 KKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFTSIHIEEFE 844 Query: 849 VMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTP 908 VMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITPKGESPMTP Sbjct: 845 VMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVAAGDILVGKITPKGESPMTP 904 Query: 909 EEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLA 968 EEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+ ++ERE+IE LA Sbjct: 905 EEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERAQAIEREEIERLA 964 Query: 969 RDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQD 1028 +D+DDEQ ILDRN ++RL EIL G+ ++GPKGFKK TV++ +++SE+PRSQWW FA + Sbjct: 965 KDRDDEQAILDRNTFARLAEILTGKTGLAGPKGFKKDTVITREVMSEFPRSQWWLFATAE 1024 Query: 1029 EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGD 1088 + + +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+KR IQ GD Sbjct: 1025 DSLMTEIEAMRKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKIQPGD 1084 Query: 1089 KMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGL 1148 KMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWA GL Sbjct: 1085 KMAGRHGNKGVVSRIVPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWAAAGL 1144 Query: 1149 GKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVST 1208 GK+I + ++ YK D L++ + V E I+ D++ ++ + + + GVPV+T Sbjct: 1145 GKQIGAALDAYKKTNDFKALKASFDAVYEDN---EIIASMDENELVEMGQNLRRGVPVAT 1201 Query: 1209 PVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVY 1268 PVF+GA E I +L A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK++ Sbjct: 1202 PVFNGAKEADIERLLEQAGLHSSGQSTLYDGRTGEPFDRKVTMGYIYMLKLHHLVDDKIH 1261 Query: 1269 ARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRV 1328 ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+V Sbjct: 1262 ARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKV 1321 Query: 1329 YESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAK 1373 YESIV G D FE G PESFNVLVKEM++LGL+++L N++ K Sbjct: 1322 YESIVRGEDNFEAGIPESFNVLVKEMRSLGLNVELVNNKVKPGEL 1366 >gi|92117084|ref|YP_576813.1| DNA-directed RNA polymerase subunit beta [Nitrobacter hamburgensis X14] gi|122418099|sp|Q1QN44|RPOB_NITHX RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|91799978|gb|ABE62353.1| DNA-directed RNA polymerase subunit beta [Nitrobacter hamburgensis X14] Length = 1380 Score = 1746 bits (4523), Expect = 0.0, Method: Composition-based stats. Identities = 905/1371 (66%), Positives = 1108/1371 (80%), Gaps = 12/1371 (0%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA FKSVF Sbjct: 3 QQTFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVDEPEGGRLDEGLQAVFKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI FSG + LEFV YEF+ PK+DVD+C R +TYA PLK+TLRLIVFD+DE T AKS+K Sbjct: 63 PINDFSGTSQLEFVRYEFEAPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETAAKSVK 122 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 DIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R Sbjct: 123 DIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAAR 182 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG- 242 +IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI+Y + Sbjct: 183 VIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKIIYKRAKS 242 Query: 243 ----DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 D W P G + L+D D+G+ V+E+GKKLT + L+EKG+K L + Sbjct: 243 GSNADGWRVPYDPV-RFRGYSTLNDLIDADSGKVVLEAGKKLTVRAARQLQEKGLKALRM 301 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + + L G+Y+AED+VN +TGEIY EAG+ I EKSL+ + +++P+L +D VN YI Sbjct: 302 SDEELVGMYLAEDLVNPKTGEIYAEAGEEITEKSLKALNEHGYKELPLLDIDHVNVGPYI 361 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL DKN R+DAL DIYRVMRPG+ T A++MF LFFDS++YDLS VGRVKMNM Sbjct: 362 RNTLSADKNLTREDALFDIYRVMRPGEPPTLESAQNMFQSLFFDSERYDLSAVGRVKMNM 421 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 RL+LD PD R +RKEDI+A+IK LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+G Sbjct: 422 RLDLDAPDTYRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRVG 481 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LLRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH Sbjct: 482 LLRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHK 541 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ Sbjct: 542 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFV 601 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV DG+VT++VVYLSAMEE ++AQAN LD G FTE+LV CR AGE + V Sbjct: 602 ETPYRKVKDGRVTDEVVYLSAMEEGRYHVAQANLPLDNRGRFTEDLVVCRHAGEVLPVTS 661 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +K+DF+D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME V Sbjct: 662 DKVDFMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGV 721 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R+GI++Q+DA R+VIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQ Sbjct: 722 VARDSGAAIAARRSGIIDQIDATRVVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQ 780 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDV Sbjct: 781 RPLVKVGDVVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDV 840 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 841 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKI 900 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+++ Sbjct: 901 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALA 960 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDEQ ILDRN+Y RL ++L + ++GPKGFKK T ++ +I EYP+ Sbjct: 961 IEREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKGFKKDTKITRSVIEEYPK 1020 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1021 SQWWLFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFV 1080 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI E Sbjct: 1081 AVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE 1140 Query: 1139 THLGWACVGLGKKIKSLINDY--KANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 THLGWAC GLG++I ++ Y A + PL+ L+KV G E I +D ++ + Sbjct: 1141 THLGWACAGLGRRIGQAVDAYLASAKQETKPLKETLKKVYGDN---ETIKSLNDHELVEL 1197 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 GVP++TPVFDGA E I ML +A +D+SGQS +YDG TG+ FDR VTVGYIYM Sbjct: 1198 GRNLSRGVPIATPVFDGAKEADIEQMLELAGMDKSGQSTVYDGRTGDTFDRKVTVGYIYM 1257 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1258 LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1317 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 +KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ Sbjct: 1318 VKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSK 1368 >gi|296444412|ref|ZP_06886377.1| DNA-directed RNA polymerase, beta subunit [Methylosinus trichosporium OB3b] gi|296258059|gb|EFH05121.1| DNA-directed RNA polymerase, beta subunit [Methylosinus trichosporium OB3b] Length = 1383 Score = 1746 bits (4521), Expect = 0.0, Method: Composition-based stats. Identities = 892/1375 (64%), Positives = 1111/1375 (80%), Gaps = 7/1375 (0%) Query: 1 MAKG--VVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAA 58 MA+ F+G RVRKFFG E ++P+LIEVQKASYD FL+++ RP+EGLQ+ Sbjct: 1 MAQTSAQTFSGRKRVRKFFGHIREAAEMPNLIEVQKASYDQFLLVDEPQGGRPDEGLQSV 60 Query: 59 FKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 FKSVFPI+ FS ++LEFV YEF+PPK+DVD+C R +T+A PLK+TLRLIVFDVD T Sbjct: 61 FKSVFPISDFSQVSLLEFVRYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPDTQ 120 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 AKS+KDIKEQ +YMGD+P MT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKL Sbjct: 121 AKSVKDIKEQDVYMGDMPFMTANGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKL 180 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 L+A RIIP +G W+DIEFD+KDI++ RIDRRRK+PVTS L ALG+D EEILSTFY +VY Sbjct: 181 LFAARIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLFALGLDGEEILSTFYKTVVY 240 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 GD W P L G K + +VD D+GE ++E+GKKLT + L EKGVK + + Sbjct: 241 KASGDSWRQPFDPERL-KGVKAVNDIVDADSGEVLVEAGKKLTVRAARQLAEKGVKAIKV 299 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 S+ L G Y+A+D+ + TGEI+ EAGD I K+L + ++PIL +D +N YI Sbjct: 300 QSEDLYGQYLAQDLYDPSTGEIFAEAGDEITIKTLPMLVEKGFDELPILDIDHINIGPYI 359 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL DKN R+DAL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNM Sbjct: 360 RNTLAIDKNSSREDALFDIYRVMRPGEPPTMDTAEAMFHSLFFDSERYDLSAVGRVKMNM 419 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 RL+LD PD +R +R+EDI+A+++ LVDLR+G+G IDDID+LGNRRVRSVGE+++NQYRLG Sbjct: 420 RLDLDAPDTMRVLRREDIVAVVRALVDLRDGRGEIDDIDHLGNRRVRSVGELMENQYRLG 479 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LLRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH Sbjct: 480 LLRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHK 539 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFI Sbjct: 540 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFI 599 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E PYR+V DGKVT++V YLSAMEE+ ++AQAN+ +D +G+ TE+LV CR AG+ +LVPR Sbjct: 600 EGPYRRVRDGKVTDEVAYLSAMEEQKYHVAQANAPIDAEGNLTEDLVLCRHAGDVVLVPR 659 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 E++D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL+KA+APFVGTGME + Sbjct: 660 ERVDAMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKADAPFVGTGMEPI 719 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA SGAAI A+R G+V+Q+DA RIV+R+ E DP+ GVDIYRLMKFQRSNQ+TC+NQ Sbjct: 720 VAADSGAAIAARRTGVVDQIDATRIVVRATEEQ-DPAKPGVDIYRLMKFQRSNQSTCINQ 778 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 +PLVKVGD VR+ DIIADGPSTD+GDLALGRN+LVAFMPW+GYNFEDS+L++ER+V EDV Sbjct: 779 KPLVKVGDFVRKGDIIADGPSTDMGDLALGRNVLVAFMPWNGYNFEDSILLNERIVKEDV 838 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHI+EFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 839 FTSIHIDEFEVMARDTKLGPEEITRDIPNVSEETLKNLDEAGIVYIGAEVQAGDILVGKI 898 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG++K+ER+ + Sbjct: 899 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVEKDERAQA 958 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDE ILDRN+Y+RL E+L G+ A++GPK FKK L+ ++ EYPR Sbjct: 959 IEREEIERLAKDRDDELAILDRNVYARLHEMLLGKVAIAGPKSFKKDQPLTQAILDEYPR 1018 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW F V+D+ + +E+++ QY+ SK LE+RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1019 SQWWTFVVEDDNLMAGIEAVRKQYDESKKGLENRFLDKVEKLQRGDELPPGVMKMVKVFV 1078 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGTPVDIVLNPLGVPSRMNVGQI E Sbjct: 1079 AVKRKIQPGDKMAGRHGNKGVVSRIVPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQILE 1138 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC GLGK++ + ++ Y + +PL+ L ++ G E + D+ ++L V + Sbjct: 1139 THLGWACAGLGKQVSAAVDAYMRTKNAAPLKEKLVEIYG---PNESLESLDEPTLLEVGK 1195 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 + GVP++TPVFDGA E+ I ML A L SGQ L+DG TGEPFDR VTVGYIY+LK Sbjct: 1196 NLRRGVPIATPVFDGAREKDICDMLGRAGLASSGQVTLFDGRTGEPFDRKVTVGYIYILK 1255 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1256 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1315 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAK 1373 SDDV GRT+VYESIV G+DTFE+G PESFNVL+KEM++L L+++L + + Sbjct: 1316 SDDVAGRTKVYESIVRGDDTFESGIPESFNVLIKEMRSLALNVELTTAEEGEDEE 1370 >gi|240140835|ref|YP_002965315.1| RNA polymerase, beta subunit [Methylobacterium extorquens AM1] gi|240010812|gb|ACS42038.1| RNA polymerase, beta subunit [Methylobacterium extorquens AM1] Length = 1376 Score = 1744 bits (4517), Expect = 0.0, Method: Composition-based stats. Identities = 896/1384 (64%), Positives = 1117/1384 (80%), Gaps = 8/1384 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R+RKFFGK E+ ++P+LIEVQKASYD FLM+ R +EGLQ+ FK Sbjct: 1 MANTLV--GRKRIRKFFGKIREVAEMPNLIEVQKASYDQFLMVGEPEGGRADEGLQSVFK 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ F+ A+LEFV Y F+ PK+DVD+C R +T+A PLK+TLRLIVFDVD TGAK Sbjct: 59 SVFPISDFASTALLEFVRYTFEQPKYDVDECRQRGITFAAPLKVTLRLIVFDVDPDTGAK 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 119 SVKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A RIIP +G W+D+EFD+KDI+HVRIDR+RK+PVTS L ALG+D EEILSTFY ++ Y + Sbjct: 179 AARIIPYRGSWLDVEFDAKDIVHVRIDRKRKLPVTSLLFALGLDGEEILSTFYNRVAYQR 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G W P A L G K S L+D D+GE V+E+GKKL + + + EKG KFL Sbjct: 239 DGADWRVPFDAERL-KGFKASVDLIDADSGEVVLEAGKKLNARNARLIGEKGTKFLRAAD 297 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEI+ EAGD I EK L+ + + ++P+L +D VN YIRN Sbjct: 298 EDLIGQYIAEDLVNMKTGEIWAEAGDEISEKLLKSLDDVGVTELPVLDIDHVNVGPYIRN 357 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+ AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 358 TLAVDKNSAREGALFDIYRVMRPGEPPTLDTAEAMFHSLFFDSERYDLSAVGRVKMNMRL 417 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +R+ED++A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYRLGLL Sbjct: 418 DLDAADTVRTLRREDMLAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLL 477 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLS+ + N LS +TH RR Sbjct: 478 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSRFMDQTNPLSEVTHKRR 537 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIET Sbjct: 538 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIET 597 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 P+R+V DG VT++V YLSAMEE Y+AQAN+ +DE T++LV CR AGE I+V ++ Sbjct: 598 PFRRVKDGVVTDEVAYLSAMEEAKYYVAQANAGMDEGRKLTDDLVVCRRAGEVIVVAPDR 657 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++A+APFVGTGME+VVA Sbjct: 658 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAVVA 717 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+R+GIV+QVDA RIVIR+ E DP+ GVDIYRL KFQRSNQ+TC+ Q+P Sbjct: 718 RDSGAAIAARRSGIVDQVDATRIVIRASEET-DPTKPGVDIYRLQKFQRSNQSTCITQKP 776 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VG+ V++ +IIADGPST+ G+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVFT Sbjct: 777 LVRVGEPVKKGEIIADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFT 836 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+ GDILVGKITP Sbjct: 837 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHAGDILVGKITP 896 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV+GT+V+VR+FNRHG+DK+ER+ ++E Sbjct: 897 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDERAQAIE 956 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN Y+RL E+L GQ+ ++GPKGF+K T L+ ++ISEYPRSQ Sbjct: 957 REEIERLAKDRDDEQTILDRNTYARLAEVLIGQSPIAGPKGFRKDTTLTREIISEYPRSQ 1016 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV D+++ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1017 WWQFAVVDDRMMTEIEAMQKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1076 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR I+ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1077 KRKIRPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1136 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG+K+ ++ Y N DI+PLR+ +E + + D+++ Sbjct: 1137 LGWAAAGLGRKVSKAVDAYLKNQDIAPLRAEMEAIYSPSE----LEGLSDEALAEAGNNV 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++TPVF+GA E I +ML MA LD S QS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1193 RRGVPMATPVFNGAKEADIETMLEMAGLDRSAQSTLYDGRTGEPFDRKVTMGYIYMLKLH 1252 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1253 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1312 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L +S+ + +A + P Sbjct: 1313 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELTSSKQQQAANDQIEPPA 1372 Query: 1381 NKCE 1384 + E Sbjct: 1373 DAAE 1376 >gi|36333365|gb|AAP75740.1| RNA polymerase beta subunit [Bosea vestrisii] Length = 1372 Score = 1744 bits (4517), Expect = 0.0, Method: Composition-based stats. Identities = 898/1374 (65%), Positives = 1106/1374 (80%), Gaps = 5/1374 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G RVRKFFGK E+ ++P+LIEVQKASYD FLM+ R +EGLQ+ FKSV Sbjct: 1 MVTSLQGRRRVRKFFGKLKEVAEMPNLIEVQKASYDQFLMVEEPKGGRSDEGLQSVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI FSGA++LEFV Y F+PPK+DVD+C R +T++ PLK+TLRLIVFD+D T AKS+ Sbjct: 61 FPIGDFSGASLLEFVKYTFEPPKYDVDECRQRGMTFSAPLKVTLRLIVFDIDPDTQAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYMGEMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+DIEFD+KDI++ RIDR+RK+PVTS L ALGMD EEIL+ FY + Y + Sbjct: 181 RIIPYRGSWLDIEFDAKDIVYARIDRKRKIPVTSLLFALGMDGEEILARFYNHLSYVRDK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D W P A M G K + ++D DTGE VIE+GKKL + + L EKG+KFL T + Sbjct: 241 DGWRVPYDAE-RMKGFKATVDMIDADTGEVVIEAGKKLVARTARQLAEKGLKFLRATDED 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G Y+AED+VN TGE++ EAGD IDEKSL+ + + ++P+L +D + YIRNTL Sbjct: 300 LYGQYIAEDLVNPATGEVFAEAGDEIDEKSLKALLDAGFDELPVLDIDHITVGPYIRNTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN R++AL DIYRVMRPG+ T AE+MF LFFDS++YDLS VGRVKMNMRL+L Sbjct: 360 KVDKNSRREEALFDIYRVMRPGEPPTLETAENMFQSLFFDSERYDLSAVGRVKMNMRLDL 419 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D D VR +RKEDI A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYRLGLLRM Sbjct: 420 DAADTVRILRKEDIFAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLLRM 479 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RRLS Sbjct: 480 ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLS 539 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGRICP ET EG NIGL++SL +FARVN YGFIE+PY Sbjct: 540 ALGPGGLTRERAGFEVRDVHTTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPY 599 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R++ DGK T++++YLSAMEE +AQAN+++D++G T++L+ CR AGE I+VP +K+D Sbjct: 600 RRIRDGKQTDEIIYLSAMEEAKYNVAQANAAVDKEGRLTDDLIVCRRAGEVIVVPVDKVD 659 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VVA+ Sbjct: 660 FMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVARD 719 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGAAI A+R G+++Q+DA RIVIR++E LDP+ SGVDIYRLMKFQRSNQ+TC+NQRPLV Sbjct: 720 SGAAIAARRTGVIDQIDATRIVIRALED-LDPTKSGVDIYRLMKFQRSNQSTCINQRPLV 778 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD V++ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVFTSI Sbjct: 779 KVGDVVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFTSI 838 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITPKG Sbjct: 839 HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVAAGDILVGKITPKG 898 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+ ++ERE Sbjct: 899 ESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERAQAIERE 958 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE LA+D+DDEQ ILDRN ++RL EIL G+ ++GPKGFKK TV++ +++SE+PRSQWW Sbjct: 959 EIERLAKDRDDEQAILDRNTFARLAEILTGKTGLAGPKGFKKDTVITREVMSEFPRSQWW 1018 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 FA D+ + +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+KR Sbjct: 1019 LFATADDALMTEIEAMRKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKR 1078 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1079 KIQPGDKMAGRHGNKGVVSRIVPAEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLG 1138 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLGK+I I+ Y+ D LR+ + V E I+ DD ++ + + + Sbjct: 1139 WAAAGLGKQIGKAIDAYRKAHDSKALRASFDAVYEDN---EIIASMDDAELIEMGQNLRR 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVF+GA E I +L A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+ Sbjct: 1196 GVPIATPVFNGAKESDIERLLEQAGLHSSGQSTLYDGRTGEPFDRKVTMGYIYMLKLHHL 1255 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1256 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 GRT+VYESIV G D FE G PESFNVLVKEM++LGL+++L N++ K E Sbjct: 1316 AGRTKVYESIVRGEDNFEAGIPESFNVLVKEMRSLGLNVELVNTKPKQGDVPAE 1369 >gi|86749405|ref|YP_485901.1| DNA-directed RNA polymerase subunit beta [Rhodopseudomonas palustris HaA2] gi|123292712|sp|Q2IXS0|RPOB_RHOP2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|86572433|gb|ABD06990.1| DNA-directed RNA polymerase, beta subunit [Rhodopseudomonas palustris HaA2] Length = 1390 Score = 1744 bits (4516), Expect = 0.0, Method: Composition-based stats. Identities = 902/1385 (65%), Positives = 1110/1385 (80%), Gaps = 24/1385 (1%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM+ P R +EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVAEPPGGRDDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FS A+MLEFV YEF+PPK+DVD+C R +TYA PLK+TLRLIVFD+DE TGA+ Sbjct: 60 SVFPISDFSNASMLEFVRYEFEPPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETGAR 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI+Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYNKILYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P A+ G + L+D DTG+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 TKEGWRVPFDAS-RFRGYSTVNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRLSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLE----------------EIFHSEIRDI 344 L G Y+AED+VN +TGEI+ EAGD + K ++ I +++ Sbjct: 299 SELVGNYLAEDLVNPKTGEIFAEAGDELTGKPIKGDDKEIELFVGATPMKAILEQGYKEL 358 Query: 345 PILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSD 404 P+L +D VN YIRNTL DKN R+DAL DIYRVMRPG+ T A++MF LFFD++ Sbjct: 359 PLLDIDHVNVGPYIRNTLSADKNMTREDALFDIYRVMRPGEPPTLDSAQNMFQSLFFDAE 418 Query: 405 KYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRV 464 +YDLS VGRVKMNMRL+LD PD R +RKEDI+A+IK LV LR+GKG IDDID+LGNRRV Sbjct: 419 RYDLSAVGRVKMNMRLDLDAPDTHRTLRKEDILAVIKTLVGLRDGKGEIDDIDHLGNRRV 478 Query: 465 RSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQ 524 RSVGE+++NQYR+GLLRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ Sbjct: 479 RSVGELMENQYRIGLLRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQ 538 Query: 525 LEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + N LS ITH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++ Sbjct: 539 FMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIN 598 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 SL +FARVN YGF+ETPYRKV +G+VT++VVYLSAMEE +AQAN SLD G FT++L Sbjct: 599 SLATFARVNKYGFVETPYRKVKEGRVTDEVVYLSAMEEGRYAVAQANISLDAKGRFTDDL 658 Query: 645 VFCRCA--GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP 702 + CR + +L+P +++D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVP Sbjct: 659 IVCRAGGTRDVVLIPADQVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVP 718 Query: 703 LLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 L++AEAPFVGTGME VVA+ SGAAI A+R G+++Q+DA RIVIR+ E LDP+ SGVDIY Sbjct: 719 LVRAEAPFVGTGMEGVVARDSGAAIAARRTGVIDQIDATRIVIRATED-LDPTKSGVDIY 777 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 RLMK+QRSNQ+TC+NQRPLVKVGD+V + DIIADGPSTDLG+LALGRN+LVAFMPW+GYN Sbjct: 778 RLMKYQRSNQSTCINQRPLVKVGDKVAKGDIIADGPSTDLGELALGRNVLVAFMPWNGYN 837 Query: 823 FEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGII 882 FEDS+L+SER+V EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ Sbjct: 838 FEDSILLSERIVKEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIV 897 Query: 883 CVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDV 942 +GAEV GDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+V Sbjct: 898 YIGAEVRAGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEV 957 Query: 943 RIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 R+FNRHG+DK+ER++++ERE+IE LA+D+DDEQ ILDRN+Y RL ++L + V+GPKGF Sbjct: 958 RVFNRHGVDKDERALAIEREEIERLAKDRDDEQAILDRNVYGRLADLLDNRQGVAGPKGF 1017 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 KK T ++ ++ EYP+SQWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q Sbjct: 1018 KKDTKITRAVLEEYPKSQWWLFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQR 1077 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++PPGV+++VKVFVA+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVL Sbjct: 1078 GDELPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVL 1137 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182 NPLGVPSRMNVGQI ETHLGWAC G+GKKI I+ Y D+ PLR L+K+ G Sbjct: 1138 NPLGVPSRMNVGQILETHLGWACAGMGKKIGQTIDAYYQRQDLKPLRETLKKIYGDD--- 1194 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242 E I DD ++ + GVP++TPVFDGA E I ML++A D SGQS +YDG TG Sbjct: 1195 ETIKSLDDGELIELGRNLSHGVPIATPVFDGAKEADIEEMLKLAGFDASGQSTVYDGRTG 1254 Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302 + FDR VTVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW + Sbjct: 1255 DEFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1314 Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +AYGAAY LQEMLT+KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++D Sbjct: 1315 EAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVD 1374 Query: 1363 LENSR 1367 L NS+ Sbjct: 1375 LHNSK 1379 >gi|240850292|ref|YP_002971685.1| DNA-directed RNA polymerase subunit beta [Bartonella grahamii as4aup] gi|240267415|gb|ACS51003.1| DNA-directed RNA polymerase subunit beta [Bartonella grahamii as4aup] Length = 1382 Score = 1744 bits (4516), Expect = 0.0, Method: Composition-based stats. Identities = 935/1367 (68%), Positives = 1130/1367 (82%), Gaps = 2/1367 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 A FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKS Sbjct: 6 AMMSQFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFKS 65 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI+ FSG AMLEFV YEFD PKFDV++C RDLTYA PLK+ LRLIVFDVDE TG+K Sbjct: 66 VFPISDFSGTAMLEFVGYEFDLPKFDVEECRQRDLTYAAPLKVILRLIVFDVDEDTGSKD 125 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 IKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+A Sbjct: 126 IKDIKEQGVYMGDMPLMTTNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFA 185 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 R+IP +G W+DIEFD+KDII+ RIDRRRK+PVTS LMALGMD+ +ILSTFY K+ Y + Sbjct: 186 ARVIPYRGSWLDIEFDAKDIIYARIDRRRKIPVTSLLMALGMDASDILSTFYDKVTYERD 245 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 G+ W P S D G K+ S L+D D+GE V E+GKKLT KSL EKG+K + ++ D Sbjct: 246 GEGWRVPYSV-DRFKGMKLISDLIDADSGEVVAEAGKKLTVRTAKSLAEKGLKAVKVSED 304 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G Y+AEDIVN ETGEIY+EAGD IDEK L+ + I IL +D +N AYIRNT Sbjct: 305 DLLGCYLAEDIVNYETGEIYLEAGDEIDEKVLKVLLDVSADQINILDIDHMNIGAYIRNT 364 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L DKN+ R+DAL DIYRVMRPG+ T AE+MF+ LFFD ++YDLS VGRVKMN+R++ Sbjct: 365 LKVDKNESRQDALFDIYRVMRPGEPPTIDTAEAMFHSLFFDPERYDLSAVGRVKMNLRMD 424 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 LD PD VR +R+EDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLR Sbjct: 425 LDCPDTVRILRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRIGLLR 484 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 MER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRL Sbjct: 485 MERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRL 544 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+P Sbjct: 545 SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP 604 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DGKVT +V+YLSAMEE Y+AQANSSLD +G FTEE V CR AGE ++ PR+ + Sbjct: 605 YRKIVDGKVTKEVIYLSAMEEAKHYVAQANSSLDSEGRFTEEFVVCRHAGEVLMAPRDHV 664 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME++VA+ Sbjct: 665 DLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEAIVAR 724 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGAA+ AKR+G+V+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPL Sbjct: 725 DSGAAVSAKRSGVVDQVDATRIVIRATED-LDPSKSGVDIYRLQKFQRSNQSTCINQRPL 783 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD V + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++DVFTS Sbjct: 784 VHVGDRVEKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFTS 843 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEFEV ARDTKLGPEEITRDIPNV+EE L+N+DE GII +GAEV PGDILVGKITPK Sbjct: 844 IHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIIYIGAEVQPGDILVGKITPK 903 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ER Sbjct: 904 GESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIER 963 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E+IE LA+D+DDEQ ILDRN+Y+RL ++L G+ AV GPKGF S L S ++ YPRSQW Sbjct: 964 EEIERLAKDRDDEQSILDRNVYARLTDMLTGKVAVEGPKGFSGSKKLDSTVMGHYPRSQW 1023 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 WQFAV+DEK+Q +E+L+ QY+ SK L+ RF +K+EK+Q GD+MPPGV+++VKVFVA+K Sbjct: 1024 WQFAVEDEKLQNEIEALRKQYDESKEALQRRFMDKVEKVQRGDEMPPGVMKMVKVFVAVK 1083 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHL Sbjct: 1084 RKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHL 1143 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWAC G+GKKI L+ Y+ GDI PLR +E ++ + E + YD++S+ ++A Q K Sbjct: 1144 GWACAGMGKKIGDLLELYQETGDILPLRQRIENLMPDDNQNEPVRQYDNESLYKLALQMK 1203 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GV ++TPVFDGA E IN ML A LD SGQ LYDG TGEPFDRPVTVGYIYMLKL+H Sbjct: 1204 KGVSIATPVFDGAHESDINIMLEDAGLDSSGQVTLYDGRTGEPFDRPVTVGYIYMLKLHH 1263 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1264 LVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1323 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 V GRT+VYE+IV G+DTFE G PESFNVLVKEM++L L+++L+++R Sbjct: 1324 VAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLALNVELDDARE 1370 >gi|170750237|ref|YP_001756497.1| DNA-directed RNA polymerase subunit beta [Methylobacterium radiotolerans JCM 2831] gi|226699422|sp|B1LY43|RPOB_METRJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|170656759|gb|ACB25814.1| DNA-directed RNA polymerase, beta subunit [Methylobacterium radiotolerans JCM 2831] Length = 1374 Score = 1743 bits (4514), Expect = 0.0, Method: Composition-based stats. Identities = 894/1382 (64%), Positives = 1114/1382 (80%), Gaps = 8/1382 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R+RKFFGK E+ ++P+LIEVQKASYD FLM++ R +EGLQ+ FK Sbjct: 1 MANTLV--GRKRIRKFFGKIKEVAEMPNLIEVQKASYDQFLMVDEPEGGRADEGLQSVFK 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ F+ A+LEFV Y F+ PK+DVD+C R +T+A PLK+TLRLIVFDVD T AK Sbjct: 59 SVFPISDFASTALLEFVRYTFEAPKYDVDECRQRGITFAAPLKVTLRLIVFDVDPDTQAK 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT++GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 119 SVKDIKEQDVYMGDMPLMTENGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A RIIP +G W+D+EFD+KDI+HVRIDR+RK+P TS L ALG+D EEILSTFY K+VY + Sbjct: 179 AARIIPYRGSWLDVEFDAKDIVHVRIDRKRKLPATSLLYALGLDGEEILSTFYNKVVYDR 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G W P A M G K + L+D D+GE V+E+GKKL + + + EKG KFL T Sbjct: 239 DGADWRVPFDAE-RMKGMKATVDLIDADSGEVVLEAGKKLNARNARQITEKGTKFLKATD 297 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G YVAED+VN +TGEI+ EAG+ + +K L+ + I ++P+L +D VN YIRN Sbjct: 298 EDLVGQYVAEDLVNAQTGEIWAEAGEEVTDKLLKSLEEVGITELPVLDIDHVNIGPYIRN 357 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN +R+ AL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL Sbjct: 358 TLAVDKNSNREGALFDIYRVMRPGEPPTLETAEAMFHSLFFDSERYDLSAVGRVKMNMRL 417 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD D VR +RKED++A++K LV+LR+GKG +DDID+LGNRRVRSVGE+++NQYRLGLL Sbjct: 418 DLDAADTVRTLRKEDMLAVVKALVELRDGKGEVDDIDHLGNRRVRSVGELMENQYRLGLL 477 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+I+ER+S VDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RR Sbjct: 478 RMERAIRERMSQVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRR 537 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIET Sbjct: 538 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIET 597 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 P+R+V DG VT++V YLSAMEE Y+AQAN+ +DE+ TE+LV CR AGE I+V E+ Sbjct: 598 PFRRVRDGVVTDEVAYLSAMEEAKYYVAQANAQMDENRKLTEDLVVCRRAGEVIVVGPER 657 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++A+APFVGTGME+VVA Sbjct: 658 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAVVA 717 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+RAGI++QVDA RIVIR+ E D + GVDIYRL KFQRSNQ+TC+ Q+P Sbjct: 718 RDSGAAIAARRAGIIDQVDATRIVIRATEEA-DANKPGVDIYRLQKFQRSNQSTCITQKP 776 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VG+ V++ +IIADGPST+ G+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DVFT Sbjct: 777 LVRVGEFVKKGEIIADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFT 836 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEVN GDILVGKITP Sbjct: 837 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVNAGDILVGKITP 896 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV+GT+V+VR+FNRHG+DK+ER+ ++E Sbjct: 897 KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDERAQAIE 956 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN Y+RL ++L GQ V+GPKGFKK T L+ +LI++YPRSQ Sbjct: 957 REEIERLAKDRDDEQAILDRNTYARLADVLIGQAPVAGPKGFKKDTTLTRELINDYPRSQ 1016 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAV D+++ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1017 WWQFAVIDDRLMTEMEAMQKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAV 1076 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1077 KRKIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1136 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG+K+ ++ Y DI+PLR ++ + G + D+ + Sbjct: 1137 LGWAAAGLGRKVSKAVDAYLKTQDIAPLREEMKAIYSPGE----LDGLTDEELAEAGNNV 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++TPVF+GA E I ML MA LD S QS LYDG TGEPFDR VT+GYIYMLKL+ Sbjct: 1193 RRGVPMATPVFNGAKEADIEQMLEMAGLDRSAQSTLYDGRTGEPFDRKVTMGYIYMLKLH 1252 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1253 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1312 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L +S+ + ++E D Sbjct: 1313 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELTSSKKAANDQLEPPADA 1372 Query: 1381 NK 1382 + Sbjct: 1373 AE 1374 >gi|90424947|ref|YP_533317.1| DNA-directed RNA polymerase subunit beta [Rhodopseudomonas palustris BisB18] gi|122475728|sp|Q211D8|RPOB_RHOPB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|90106961|gb|ABD88998.1| DNA-directed RNA polymerase, beta subunit [Rhodopseudomonas palustris BisB18] Length = 1373 Score = 1743 bits (4514), Expect = 0.0, Method: Composition-based stats. Identities = 903/1369 (65%), Positives = 1109/1369 (81%), Gaps = 8/1369 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM++ R +EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVDEPVGGRLDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FS +MLEFV YEF+PPK+DVD+C R +TYA PLK+TLRLIVFD+DE TGA+ Sbjct: 60 SVFPISDFSNTSMLEFVRYEFEPPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETGAR 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKIQYKK 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P + + G + L+D DTG+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 IKEGWRVPFDS-NRFRGYSTINDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRLSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEIY EAG+ I EKSL+ + +++P+L +D VN AYIRN Sbjct: 299 EELVGNYLAEDLVNPKTGEIYAEAGEEITEKSLKGLNEQGYKELPLLDIDHVNIGAYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFDS++YDLS VGRVKMNMRL Sbjct: 359 TLAADKNMTREDALFDIYRVMRPGEPPTIDSAQNMFQSLFFDSERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD PD R +RKEDI+A+IK LV LR+G+G IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 ELDAPDTHRTLRKEDILAVIKTLVGLRDGRGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPR 658 PYR+ DG+VT++VVYLSAMEE +AQAN LD G F E+L+ CR + +L+P Sbjct: 599 PYRRCKDGRVTDEVVYLSAMEEGRYSVAQANVQLDPKGRFVEDLIVCRDGGTRDVVLIPA 658 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +K+DF+D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME V Sbjct: 659 DKVDFMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGV 718 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R G+++Q+DA RIVIR+ + LDP+ SGVDIYRLMK+QRSNQ+TC+NQ Sbjct: 719 VARDSGAAIAARRTGVIDQIDATRIVIRATDD-LDPTKSGVDIYRLMKYQRSNQSTCINQ 777 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD V + DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V +DV Sbjct: 778 RPLVKVGDMVAKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDV 837 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 838 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKI 897 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+++ Sbjct: 898 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALA 957 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDEQ ILDRN+Y RL ++L + ++GPKGFKK T ++ +I EYP+ Sbjct: 958 IEREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKGFKKDTKITRAVIEEYPK 1017 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1018 SQWWLFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFV 1077 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI E Sbjct: 1078 AVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE 1137 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC GLGK+I I+ Y D+ P+R L K+ G E I +D +L +A Sbjct: 1138 THLGWACAGLGKRIGQTIDAYYQKQDLKPMRETLRKIYGED---ETIKSLNDAELLELAR 1194 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K GVP++TPVFDGA E I ML++A LD SGQS +YDG TG+ FDR VTVGYIYMLK Sbjct: 1195 NLKPGVPIATPVFDGAKEADIEEMLKLAGLDASGQSTVYDGRTGDTFDRKVTVGYIYMLK 1254 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1255 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1314 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 SDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL NS+ Sbjct: 1315 SDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSK 1363 >gi|49475398|ref|YP_033439.1| DNA-directed RNA polymerase subunit beta [Bartonella henselae str. Houston-1] gi|41017805|sp|Q9KJG4|RPOB_BARHE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|9309387|gb|AAF87049.1|AF171070_1 RNA polymerase beta subunit [Bartonella henselae str. Houston-1] gi|49238204|emb|CAF27414.1| DNA-directed RNA polymerase beta chain [Bartonella henselae str. Houston-1] Length = 1383 Score = 1743 bits (4513), Expect = 0.0, Method: Composition-based stats. Identities = 929/1368 (67%), Positives = 1131/1368 (82%), Gaps = 2/1368 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 5 LAMTSQFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMIEEPKGGRPDEGLQAVFK 64 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG AMLEFV Y+FD PKFDV++C RDLTYA PLK+ LRLIVFDVDE TG+K Sbjct: 65 SVFPISDFSGTAMLEFVGYQFDSPKFDVEECRQRDLTYAAPLKVILRLIVFDVDEDTGSK 124 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 IKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGK L+ Sbjct: 125 DIKDIKEQGVYMGDMPLMTTNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKFLF 184 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDII+ RIDRRRK+PVTS LMALGMD+ +ILSTFY K+ Y + Sbjct: 185 AARVIPYRGSWLDIEFDAKDIIYARIDRRRKIPVTSLLMALGMDASDILSTFYNKVTYER 244 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P S D G K+ S L+D D+GE V E+GKKLT K+L EKG+K + ++ Sbjct: 245 DGDGWRIPYSV-DRFKGMKLVSDLIDADSGEVVAEAGKKLTVRAAKALAEKGLKAVKVSE 303 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AEDIVN +TGEIY+EAGD IDEK+L +F I IL +D +N AYIRN Sbjct: 304 DDLLGSYLAEDIVNYQTGEIYLEAGDEIDEKTLRVLFDVNADQIDILDIDHMNIGAYIRN 363 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R+DAL DIYRVMRPG+ T AE+MF+ LFFD ++YDLS VGRVKMN+R+ Sbjct: 364 TLKVDKNESRQDALFDIYRVMRPGEPPTMDTAEAMFHSLFFDPERYDLSAVGRVKMNLRM 423 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD VR +R+EDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 424 DLDCPDTVRVLRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRIGLL 483 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 484 RMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 543 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 544 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 603 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DGKVT +V+YLSAMEE Y+AQANSSLD +G +EE V CR AGE ++ PR+ Sbjct: 604 PYRKIIDGKVTTEVIYLSAMEESKHYVAQANSSLDAEGRLSEEFVVCRHAGEVLMAPRDH 663 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGMES+VA Sbjct: 664 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMESIVA 723 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAA+ A+R+GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 724 RDSGAAVAARRSGIVDQVDATRIVIRATED-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 782 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD V + +IIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 783 LVHVGDRVEKGNIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFT 842 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNV+EE L+N+DE GII +GAEV PGDILVGKITP Sbjct: 843 SIHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIIYIGAEVQPGDILVGKITP 902 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 903 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGAFGTVVEVRVFNRHGVEKDERAMAIE 962 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y+RL ++L G+ AV GPKGF K+ L + ++ YPRSQ Sbjct: 963 REEIERLAKDRDDEQSILDRNVYARLTDMLVGKVAVEGPKGFSKNKKLDTTIMGHYPRSQ 1022 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQF V+DEK+Q +E+L+ QY+ SK L+ RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1023 WWQFTVEDEKLQNEIEALRNQYDESKEALQRRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1082 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1083 KRKIQPGDKMAGRHGNKGVVSRILPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1142 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ GDI PLR +E ++ H E + YD++S+ ++A Q Sbjct: 1143 LGWACAGMGKKIGDLVDLYQETGDILPLRQRIENLMPDDDHNEPVRQYDNESLYKLALQM 1202 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GV ++TPVFDGA E IN ML A LD SGQ LYDG TGEPFDRPVTVGYIYMLKL+ Sbjct: 1203 RKGVSIATPVFDGAHEADINMMLEDAGLDSSGQVTLYDGRTGEPFDRPVTVGYIYMLKLH 1262 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1263 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1322 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++L L+++L+++R Sbjct: 1323 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLALNVELDDARE 1370 >gi|319404381|emb|CBI77984.1| DNA-directed RNA polymerase, beta chain [Bartonella rochalimae ATCC BAA-1498] Length = 1382 Score = 1742 bits (4512), Expect = 0.0, Method: Composition-based stats. Identities = 933/1372 (68%), Positives = 1129/1372 (82%), Gaps = 6/1372 (0%) Query: 1 MAKGVV----FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQ 56 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ R +EGLQ Sbjct: 1 MAQTLAMMSQFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMIEEPEGGRLDEGLQ 60 Query: 57 AAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEF 116 A FKSVFPI+ FSG AMLEFV YEFDPPKFDV++C RDLTYA PLK+ LRLIVFDVDE Sbjct: 61 AVFKSVFPISDFSGTAMLEFVRYEFDPPKFDVEECHQRDLTYAAPLKVILRLIVFDVDED 120 Query: 117 TGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSG 176 TG+K IKDIKEQ +YMGD+PLMT +GTFVI G +R++VSQ+HRSPG+ FDHDKG+ SG Sbjct: 121 TGSKDIKDIKEQGVYMGDMPLMTDNGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSG 180 Query: 177 KLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKI 236 K L+A R+IP +G W+DIEFD+KDI++VRIDRRRK+PVTS LMALGMD+ +ILSTFY K+ Sbjct: 181 KFLFAARVIPYRGSWLDIEFDAKDIVYVRIDRRRKIPVTSLLMALGMDASDILSTFYNKV 240 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFL 296 Y + + W P S D G K+ S LVD D+GE V E+GKKLT K L+EKG+K + Sbjct: 241 SYERTKNGWRTPYSV-DRFRGMKLVSDLVDADSGEVVAEAGKKLTVRAAKLLEEKGLKAI 299 Query: 297 GITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 ++ D L G Y+AEDIVN +TGEIY+EAGD IDEK+L+ + I IL +D +N A Sbjct: 300 EVSEDDLLGSYLAEDIVNYQTGEIYLEAGDEIDEKTLKILSDVGADQINILDIDHMNVGA 359 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 YIRNTL DKN+ R+DAL DIYRVMRPG+ T + AE+MF+ LFFD ++YDLS VGRVKM Sbjct: 360 YIRNTLKVDKNESRQDALFDIYRVMRPGEPPTINTAEAMFHSLFFDPERYDLSAVGRVKM 419 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N+R+ LD PD VR +R+EDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR Sbjct: 420 NLRMGLDCPDTVRILRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYR 479 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GLLRMER+IKER+S V+ID++MPQDLINAKP +AV EFF SSQLSQ + N LS IT Sbjct: 480 IGLLRMERAIKERMSLVEIDTIMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEIT 539 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YG Sbjct: 540 HKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG 599 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE+PYRK+ DGKVT +V+YLSAMEE Y+AQANSSLD +G FTEE V CR AGE ++ Sbjct: 600 FIESPYRKIIDGKVTKEVIYLSAMEESKHYVAQANSSLDAEGRFTEEFVVCRHAGEVLMA 659 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 PR+ ID +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAP VGTGME Sbjct: 660 PRDHIDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPLVGTGME 719 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++VA SGAAI AKR GIV+QVDA+RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+ Sbjct: 720 AIVACDSGAAIGAKRGGIVDQVDAMRIVIRATED-LDPSKSGVDIYRLQKFQRSNQSTCI 778 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRPLV VGD + + DIIADG STDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++ Sbjct: 779 NQRPLVHVGDRIEKGDIIADGSSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVAD 838 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV+EE L+N+DE GI+ +GAEV+PGDILVG Sbjct: 839 DVFTSIHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIVYIGAEVHPGDILVG 898 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 KITPKGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER+ Sbjct: 899 KITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERA 958 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEY 1016 +++ERE+IE LA+D+DDEQ ILDR++Y+RL +IL G+ A+ GPKGF K L S ++ +Y Sbjct: 959 MAIEREEIERLAKDRDDEQSILDRSVYARLADILTGKVAIEGPKGFSKGKTLDSTVMEQY 1018 Query: 1017 PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 PR QWWQFAV+DEK+Q +E+L QY+ SK L+ RF +K+EK+Q GD+MPPGV+++VKV Sbjct: 1019 PRYQWWQFAVEDEKLQNEIEALHKQYDESKKALQRRFMDKVEKVQRGDEMPPGVMKIVKV 1078 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 FVA+KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI Sbjct: 1079 FVAVKRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQI 1138 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 ETHLGWAC G+GKKI LI Y+ GDI PLR +E +I E + YD++S++++ Sbjct: 1139 LETHLGWACAGMGKKIGDLIKLYQETGDILPLRQRIENLIPDDDRNEPVRHYDNESLIKL 1198 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A Q K GV ++TPVFDGA E IN ML A LD SGQ LYDG TGEPFDRPVTVGYIYM Sbjct: 1199 ALQMKQGVSIATPVFDGAHEADINMMLEDAGLDSSGQVTLYDGRTGEPFDRPVTVGYIYM 1258 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1259 LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1318 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 +KSDDV GRT+VYE++V G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VKSDDVAGRTKVYEAVVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDARE 1370 >gi|319408383|emb|CBI82038.1| DNA-directed RNA polymerase, beta chain [Bartonella schoenbuchensis R1] Length = 1382 Score = 1741 bits (4509), Expect = 0.0, Method: Composition-based stats. Identities = 931/1372 (67%), Positives = 1127/1372 (82%), Gaps = 6/1372 (0%) Query: 1 MAKGVV----FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQ 56 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ + RP+EGLQ Sbjct: 1 MAQTLAMMSQFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMIEESEGGRPDEGLQ 60 Query: 57 AAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEF 116 A FKSVFPI+ FSG AMLEFV YEFD PKFDV++C RDLTYA PLK+ LRLIVFD+DE Sbjct: 61 AVFKSVFPISDFSGTAMLEFVRYEFDLPKFDVEECRQRDLTYAAPLKVILRLIVFDIDED 120 Query: 117 TGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSG 176 TG+K IKDIKEQ +YMGD+PLMT +GTFVI G +R++VSQ+HRSPG+ FDHDKG++ SG Sbjct: 121 TGSKDIKDIKEQGVYMGDMPLMTSNGTFVINGTERVIVSQMHRSPGVFFDHDKGKSHSSG 180 Query: 177 KLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKI 236 KLL+A R+IP +G W+DIEFD+KDII+ RIDRRRK+PVTS LMALGMD+ +ILSTFY KI Sbjct: 181 KLLFAARVIPYRGSWLDIEFDAKDIIYARIDRRRKIPVTSLLMALGMDASDILSTFYNKI 240 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFL 296 Y + + W P S D G K+ S L+D D+GE V E+GKKLT K L EKG+K + Sbjct: 241 TYERVENGWRVPYSI-DRFKGMKLVSDLIDADSGEVVAEAGKKLTVRTAKLLAEKGLKAI 299 Query: 297 GITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 ++ D L G Y+AEDIVN +TGEIY+EAGD ID+K+L+ +F I +L +D +N A Sbjct: 300 RVSEDDLLGSYLAEDIVNYQTGEIYLEAGDEIDDKALKILFDINADQIDVLDIDHMNVGA 359 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 YIRNTL DKN+ R+DAL DIYRVMRPG+ T AE+MF LFFD ++YDLS VGRVKM Sbjct: 360 YIRNTLKVDKNESRQDALFDIYRVMRPGEPPTIDTAEAMFLSLFFDPERYDLSAVGRVKM 419 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N+R+ LD PD VR +R+EDI+ ++K+LV+LR+G G IDDIDNLGNRRVRSVGE+++NQYR Sbjct: 420 NLRMGLDCPDTVRTLRQEDILGVVKMLVELRDGHGEIDDIDNLGNRRVRSVGELMENQYR 479 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS IT Sbjct: 480 IGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEIT 539 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YG Sbjct: 540 HKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG 599 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE+PYRK+ DGKVT +V+YLSAMEE Y+AQANSSLD +G FTEE V CR AGE ++ Sbjct: 600 FIESPYRKIIDGKVTTEVIYLSAMEESKHYVAQANSSLDSEGRFTEEFVVCRHAGEVLMA 659 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 PR+ +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME Sbjct: 660 PRDHVDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLIRAEAPFVGTGME 719 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 S+VA+ SGAAI AKR+GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+ Sbjct: 720 SIVARDSGAAIGAKRSGIVDQVDATRIVIRATED-LDPSKSGVDIYRLQKFQRSNQSTCI 778 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRPLV VGD V + DIIADGPST+LGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++ Sbjct: 779 NQRPLVHVGDRVEKGDIIADGPSTNLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVAD 838 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV+EE L+N+DE GI+ +GAEV PGDILVG Sbjct: 839 DVFTSIHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIVYIGAEVQPGDILVG 898 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 KITPKGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER+ Sbjct: 899 KITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERA 958 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEY 1016 +++ERE+IE LA+D+DDEQ ILDRN+Y+RL ++L + A+ GPKGF K L S ++ Y Sbjct: 959 MAIEREEIERLAKDRDDEQSILDRNVYARLADMLKDKVAIEGPKGFSKGKKLDSAIMDSY 1018 Query: 1017 PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 PRSQWWQFA+ DEK+Q +E+L+ QY+ SK L+ F +K+EK+Q GD+MPPGV+++VKV Sbjct: 1019 PRSQWWQFAIDDEKIQNEIEALRKQYDESKETLQRCFMDKVEKVQRGDEMPPGVMKMVKV 1078 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 FVA+KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI Sbjct: 1079 FVAVKRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQI 1138 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 ETHLGWAC G+GKKI L+ Y+ GDI PLR +E +I E + Y+++S+ ++ Sbjct: 1139 LETHLGWACAGMGKKIGDLVELYQGTGDILPLRQCIENLIPDNDRNEPVRQYNNESLFKL 1198 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A Q K GV ++TPVFDGA E IN ML A LD SGQ LYDG TGEPFDRPVTVGYIYM Sbjct: 1199 ALQMKDGVSIATPVFDGAHEADINMMLEDAGLDSSGQVTLYDGRTGEPFDRPVTVGYIYM 1258 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1259 LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1318 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 +KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDARG 1370 >gi|36333367|gb|AAP75741.1| RNA polymerase beta subunit [Bosea eneae] Length = 1372 Score = 1741 bits (4509), Expect = 0.0, Method: Composition-based stats. Identities = 896/1374 (65%), Positives = 1105/1374 (80%), Gaps = 5/1374 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G RVRKFFGK E+ ++P+LIEVQKASYD FLM+ R +EGLQ+ FKSV Sbjct: 1 MVTSLQGRRRVRKFFGKLKEVAEMPNLIEVQKASYDQFLMVEEPKGGRGDEGLQSVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI FSGA++LEFV Y F+PPK+DVD+C R +T++ PLK+TLRLIVFD+D T AKS+ Sbjct: 61 FPIGDFSGASLLEFVKYTFEPPKYDVDECRQRGMTFSAPLKVTLRLIVFDIDPDTQAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYMGEMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+DIEFD+KDI++ RIDR+RK+PVTS L ALGMD EEIL+ FY + Y + Sbjct: 181 RIIPYRGSWLDIEFDAKDIVYARIDRKRKIPVTSLLFALGMDGEEILARFYNHLSYVRDK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D W P A M G K + ++D DTGE VIE+GKKL + + L EKG+KFL T + Sbjct: 241 DGWRVPYDAE-RMKGFKATVDMIDADTGEVVIEAGKKLVARTARQLAEKGLKFLRATDED 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G Y+AED+VN +TGE++ EAGD IDEKSL+ + + ++P+L +D + YIRNTL Sbjct: 300 LYGQYIAEDLVNPQTGEVFAEAGDEIDEKSLKALLDAGFDELPVLDIDHITVGPYIRNTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN R++AL DIYRVMRPG+ T AE+MF LFFD+++YDLS VGRVKMNMRL+L Sbjct: 360 KVDKNSRREEALFDIYRVMRPGEPPTLETAENMFQSLFFDAERYDLSAVGRVKMNMRLDL 419 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D D VR +RKEDI A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYRLGLLRM Sbjct: 420 DAEDTVRILRKEDIFAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLLRM 479 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RRLS Sbjct: 480 ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLS 539 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGRICP ET EG NIGL++SL +FARVN YGFIE+PY Sbjct: 540 ALGPGGLTRERAGFEVRDVHTTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPY 599 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R++ DGK T++++YLSAMEE +AQAN+++D++G T++L+ CR AGE I+VP +K+D Sbjct: 600 RRIRDGKQTDEIIYLSAMEEAKYNVAQANAAVDKEGRLTDDLIVCRRAGEVIVVPVDKVD 659 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VVA+ Sbjct: 660 FMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVARD 719 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGAAI A+R G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQRPLV Sbjct: 720 SGAAIAARRTGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQRPLV 778 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD+VR+ DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SE +V DVFTSI Sbjct: 779 KVGDQVRKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSEXIVXXDVFTSI 838 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITPKG Sbjct: 839 HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVAAGDILVGKITPKG 898 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+ ++ERE Sbjct: 899 ESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERAQAIERE 958 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE LA+D+DDEQ ILDRN ++RL EIL G+ ++GPKGFKK TV++ +++SE+PRSQWW Sbjct: 959 EIERLAKDRDDEQAILDRNTFARLAEILTGKTGLAGPKGFKKDTVITREVMSEFPRSQWW 1018 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 FA D+ + +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+KR Sbjct: 1019 LFATSDDALMTEIEAMRKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKR 1078 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1079 KIQPGDKMAGRHGNKGVVSRIVPAEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLG 1138 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLGK+I I+ Y+ D LR+ + V E I+ DD ++ + + + Sbjct: 1139 WAAAGLGKQIGKAIDAYRKAHDSKALRASFDAVYEDN---EIIASMDDAELIEMGQNLRR 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVF+GA E I +L A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+ Sbjct: 1196 GVPIATPVFNGAKESDIERLLEQAGLHSSGQSTLYDGRTGEPFDRKVTMGYIYMLKLHHL 1255 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1256 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 GRT+VYESIV G D FE G PESFNVLVKEM++LGL+++L N++ K E Sbjct: 1316 AGRTKVYESIVRGEDNFEAGIPESFNVLVKEMRSLGLNVELVNTKPKPGEVPAE 1369 >gi|83312239|ref|YP_422503.1| DNA-directed RNA polymerase subunit beta [Magnetospirillum magneticum AMB-1] gi|109904152|sp|Q2W2I1|RPOB_MAGSA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|82947080|dbj|BAE51944.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Magnetospirillum magneticum AMB-1] Length = 1391 Score = 1740 bits (4507), Expect = 0.0, Method: Composition-based stats. Identities = 857/1392 (61%), Positives = 1077/1392 (77%), Gaps = 29/1392 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + G RVRK FG+ P + +P+LIEVQK+SYDHFL M+ AP++R N GLQ FKSV Sbjct: 1 MAKSYTGRKRVRKSFGRIPTVAPMPNLIEVQKSSYDHFLQMDTAPEQRGNVGLQEVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI FS LEFV YE + PK+DV++C R +T+A PLK+TLRL+V+D+DE TG++SI Sbjct: 61 FPIKDFSERGTLEFVRYELEQPKYDVEECQQRGMTFAAPLKVTLRLVVWDIDEDTGSRSI 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DIKEQ +YMGD+PLMT +GTFVI G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 121 RDIKEQDVYMGDMPLMTSNGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL--------------------- 221 R+IP +G W+D EFD+KD+++VRIDRRRK+PVT+ L AL Sbjct: 181 RVIPYRGSWLDFEFDAKDLVYVRIDRRRKLPVTTLLYALDGMNTAALRAQRAAEGRGLEQ 240 Query: 222 ----GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESG 277 GM SEEILS FY K+VY++ W P A L G K+ S L+D +GE+V ++G Sbjct: 241 SEIKGMTSEEILSYFYGKVVYTRGPKGWKTPFDAERL-KGVKLVSDLIDAKSGEKVADAG 299 Query: 278 KKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIF 337 K+T L K L+E G+ + + + + G YVAEDI+N +TGEI+ EAGD + + E+ Sbjct: 300 SKMTPRLGKKLREAGLTDIVVFPEDMIGQYVAEDIINEQTGEIFTEAGDELTANLVAELE 359 Query: 338 HSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFN 397 + I ++P+L +D +N Y+RNTL DKN R++AL+DIYRVMRPG+ T AE++F Sbjct: 360 KAGISELPVLAIDHINVGPYMRNTLAIDKNSSREEALIDIYRVMRPGEPPTLETAEALFT 419 Query: 398 FLFFDSDKYDLSTVGRVKMNMRLN-LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 LFFDS++YDLS VGRVKMN RLN + D VR +RKEDI+ +IK+LV+L++GKG IDDI Sbjct: 420 GLFFDSERYDLSAVGRVKMNSRLNTPEVADTVRVLRKEDILGVIKVLVELKDGKGEIDDI 479 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEF 516 D+LGNRRVRSVGE+++NQYR+GLLRMER+I+ER+SSVDIDSVMP DLINAKP +AV EF Sbjct: 480 DHLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDSVMPHDLINAKPAAAAVREF 539 Query: 517 FCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSE 576 F SSQLSQ + N LS ITH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET E Sbjct: 540 FGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPE 599 Query: 577 GHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDE 636 G NIGL++SL ++ARVN YGFIE PYRKV DG+VT+DVVYLSAMEE +AQANS LD Sbjct: 600 GPNIGLINSLATYARVNQYGFIEAPYRKVFDGRVTSDVVYLSAMEEGRYTVAQANSILDA 659 Query: 637 DGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNM 696 DG FTE+LV CR AG+ ++VP +I+ ID SPKQ+VS+AA+LIPFLENDD+NR LMG NM Sbjct: 660 DGRFTEDLVSCRRAGDFVMVPPNEINMIDVSPKQLVSVAAALIPFLENDDANRALMGSNM 719 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPST 756 QRQAVPL++AEAP VGTGME VA+ SGAAI AKR G+V+QVDA R+VIR+ E + Sbjct: 720 QRQAVPLIRAEAPLVGTGMEQAVARDSGAAITAKRTGVVDQVDATRVVIRATEETQASA- 778 Query: 757 SGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 SGVDIY L+KFQRSNQNTC+ QRPLVKVGD +++ DIIADGPST LG+LALGRN+LVAFM Sbjct: 779 SGVDIYNLLKFQRSNQNTCITQRPLVKVGDLIQKGDIIADGPSTQLGELALGRNVLVAFM 838 Query: 817 PWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNI 876 PW+GYNFEDS+LISER+V +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE LKN+ Sbjct: 839 PWNGYNFEDSILISERIVRDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNL 898 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 DE GI+ +GAEV PGDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GVS Sbjct: 899 DEAGIVYIGAEVKPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVS 958 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 GT+V+VR+F+R G++K+ER++++ER +IE LA+D+DDE+ IL+R+ ++RL ++ G+ V Sbjct: 959 GTIVEVRVFSRRGVEKDERALAIERAEIERLAKDRDDERHILERSFFARLKALIIGKKVV 1018 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 SGPKG K TVL+ + E S W A+ D+ V + E+LK ++ L++RF+NK Sbjct: 1019 SGPKGIKAGTVLADANMDELHPSTWRNIAIDDDAVMADAEALKRAFDQQVDKLQERFENK 1078 Query: 1057 IEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGT 1116 +EK+Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG++SRI+P EDMP+L+DG Sbjct: 1079 VEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRIVPLEDMPYLEDGQ 1138 Query: 1117 PVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK-ANGDISPLRSFLEKV 1175 VDIVLNPLGVPSRMNVGQI ETHLGWAC GLG++I +++ YK I L+S L+ V Sbjct: 1139 QVDIVLNPLGVPSRMNVGQILETHLGWACAGLGQQIGGMLDKYKRNAATIIDLKSKLKDV 1198 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 G + ++I+ D+ + +A GVP++TPVFDGA E I +ML A SGQ Sbjct: 1199 YGDAIYEDEIAGLADNEITELAHNLTPGVPIATPVFDGARESDIVAMLTKAGRSSSGQVT 1258 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 L DG TGEPFDR VTVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1259 LVDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG 1318 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKE++ Sbjct: 1319 EMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDTFEAGIPESFNVLVKELR 1378 Query: 1356 ALGLSIDLENSR 1367 +LGL+++L Sbjct: 1379 SLGLNVELTQRN 1390 >gi|163868089|ref|YP_001609293.1| DNA-directed RNA polymerase subunit beta [Bartonella tribocorum CIP 105476] gi|189043847|sp|A9ISG1|RPOB_BART1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|161017740|emb|CAK01298.1| DNA-directed RNA polymerase, beta chain [Bartonella tribocorum CIP 105476] Length = 1383 Score = 1740 bits (4506), Expect = 0.0, Method: Composition-based stats. Identities = 937/1367 (68%), Positives = 1131/1367 (82%), Gaps = 2/1367 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 A FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FKS Sbjct: 6 AMMSQFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMIEEPKGGRPDEGLQAVFKS 65 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI+ FSG AMLEFV YEFD PKFDV++C RDLTYA PLK+ LRLIVFD+DE TG+K Sbjct: 66 VFPISDFSGTAMLEFVGYEFDLPKFDVEECRQRDLTYAAPLKVILRLIVFDIDEDTGSKD 125 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 IKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+A Sbjct: 126 IKDIKEQGVYMGDMPLMTTNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFA 185 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 R+IP +G W+DIEFD+KDII+ RIDRRRK+PVTS LMALGMD +ILSTFY K+ Y + Sbjct: 186 ARVIPYRGSWLDIEFDAKDIIYARIDRRRKIPVTSLLMALGMDGSDILSTFYDKVTYERD 245 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 G+ W P S D G K+ S L+D D+GE V E+GKKLT KSL EKG+K + ++ D Sbjct: 246 GEGWRVPYSV-DRFKGMKLISDLIDADSGEVVAEAGKKLTVRTAKSLAEKGLKAVKVSED 304 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G Y+AEDIVN ETGEIY+EAGD IDEK L+ + I IL +D +N AYIRNT Sbjct: 305 DLLGCYLAEDIVNYETGEIYLEAGDEIDEKVLKILLDVRADQINILDIDHMNIGAYIRNT 364 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L DKN+ R+DAL DIYRVMRPG+ T AE+MF+ LFFD ++YDLS VGRVKMN+R++ Sbjct: 365 LKVDKNESRQDALFDIYRVMRPGEPPTIDTAEAMFHSLFFDPERYDLSAVGRVKMNLRMD 424 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 LD PD VR +R+EDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLR Sbjct: 425 LDCPDTVRVLRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRIGLLR 484 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 MER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRL Sbjct: 485 MERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRL 544 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+P Sbjct: 545 SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP 604 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DGKVT +V+YLSAMEE Y+AQANSSLD +G FTEE V CR AGE ++ PR+ + Sbjct: 605 YRKIIDGKVTKEVIYLSAMEEAKHYVAQANSSLDSEGRFTEEFVVCRHAGEVLMAPRDHV 664 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME+VVA+ Sbjct: 665 DLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEAVVAR 724 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGAA+ AKR+GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPL Sbjct: 725 DSGAAVSAKRSGIVDQVDATRIVIRATED-LDPSKSGVDIYRLQKFQRSNQSTCINQRPL 783 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD V + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++DVFTS Sbjct: 784 VHVGDRVEKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFTS 843 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEFEV ARDTKLGPEEITRDIPNV+EE L+N+DE GII +GAEV PGDILVGKITPK Sbjct: 844 IHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIIYIGAEVQPGDILVGKITPK 903 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ER Sbjct: 904 GESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIER 963 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E+IE LA+D+DDEQ ILDRN+Y+RL ++L G+ AV GPKGF +S L S ++ YPRSQW Sbjct: 964 EEIERLAKDRDDEQSILDRNVYARLTDMLTGKVAVEGPKGFSESKKLDSTVMGRYPRSQW 1023 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 WQFAV+DEK+Q +E+L+ QY+ SK L+ RF +K+EK+Q GD+MPPGV+++VKVFVA+K Sbjct: 1024 WQFAVEDEKLQNEIEALRKQYDESKEALQRRFMDKVEKVQRGDEMPPGVMKMVKVFVAVK 1083 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHL Sbjct: 1084 RKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHL 1143 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWAC G+GKKI L+ Y+ GDI PLR +E ++ +H E + YD++S+ ++A Q K Sbjct: 1144 GWACAGMGKKIGDLLELYQETGDILPLRQRIENLMPDDNHNEPVRQYDNESLYKLALQMK 1203 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GV ++TPVFDGA E IN ML A LD SGQ LYDG TGEPFDRPVTVGYIYMLKL+H Sbjct: 1204 KGVSIATPVFDGAHESDINMMLEDAGLDSSGQVTLYDGRTGEPFDRPVTVGYIYMLKLHH 1263 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1264 LVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1323 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 V GRT+VYE+IV G+DTFE G PESFNVLVKEM++L L+++L+++R Sbjct: 1324 VAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLALNVELDDARE 1370 >gi|36333361|gb|AAP75738.1| RNA polymerase beta subunit [Bosea thiooxidans] Length = 1373 Score = 1739 bits (4505), Expect = 0.0, Method: Composition-based stats. Identities = 886/1365 (64%), Positives = 1097/1365 (80%), Gaps = 5/1365 (0%) Query: 9 GLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF 68 G RVRKFFGK E+ +P+LIEVQKASYD FLM++ RP+EGLQ+ FKSVFPI F Sbjct: 7 GRRRVRKFFGKLKEVAQMPNLIEVQKASYDQFLMVDEPKGGRPDEGLQSVFKSVFPIGDF 66 Query: 69 SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 SGA++LEFV Y F+PPK+DVD+C R +T++ PLK+TLRLIVFD+D T AKS+KDIKEQ Sbjct: 67 SGASLLEFVKYTFEPPKYDVDECRQRGMTFSAPLKVTLRLIVFDIDPDTQAKSVKDIKEQ 126 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A RIIP + Sbjct: 127 DVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARIIPYR 186 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+DIEFD+KDI++ RIDR+RK+PVTS L ALGMD EEIL+ FY I Y++ W P Sbjct: 187 GSWLDIEFDAKDIVYARIDRKRKIPVTSLLFALGMDGEEILNRFYNHINYTKDAKGWRVP 246 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 A M G K + ++D DTGE V+E+GKKL + + L EKG+KFL + L Y+ Sbjct: 247 YDAE-RMKGFKATEDMIDADTGEVVVEAGKKLVARTARQLAEKGLKFLRAQDEDLYTQYI 305 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AED+VN TGE+Y EAG+ I EK L+++ +IP+L +D + YIRNTL DKN Sbjct: 306 AEDLVNPATGEVYAEAGEEITEKLLKQLTDDGFDEIPVLDIDHITVGPYIRNTLNVDKNS 365 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 R++AL DIYRVMRPG+ T AE+MF LFFD ++YDLS VGRVKMNMRL+LD D V Sbjct: 366 RREEALFDIYRVMRPGEPPTLETAENMFQSLFFDPERYDLSAVGRVKMNMRLDLDAEDTV 425 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 R +RKEDI A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYRLGLLRMER+IKE Sbjct: 426 RILRKEDIFAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLLRMERAIKE 485 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RRLSALG GG Sbjct: 486 RMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGG 545 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 + R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYR++ DG Sbjct: 546 LTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRRIRDG 605 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 KVT++V+YLSAMEE +AQAN+++D +G T++L+ CR AGE I+ P +K+DF D SP Sbjct: 606 KVTDEVIYLSAMEEAKYNVAQANAAVDGEGRLTDDLIVCRRAGEVIVTPVDKVDFQDVSP 665 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 KQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++A+APFVGTGME+VVA+ SGAAI Sbjct: 666 KQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAVVARDSGAAIA 725 Query: 729 AKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEV 788 A+R GIV+QVDA RIVIR+ + DP+ GVDIYRL KFQRSNQ+TC+ QRPLV+VGD V Sbjct: 726 ARRGGIVDQVDATRIVIRASDEM-DPTKPGVDIYRLQKFQRSNQSTCITQRPLVRVGDVV 784 Query: 789 RRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFE 848 ++ DI+ADGPST+ G+LALGRN+LVAFMPW+GYNFEDS+L+SE++VSEDVFTSIHIEEFE Sbjct: 785 KKGDIVADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSEKIVSEDVFTSIHIEEFE 844 Query: 849 VMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTP 908 VMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITPKGESPMTP Sbjct: 845 VMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVAAGDILVGKITPKGESPMTP 904 Query: 909 EEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLA 968 EEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+ ++ERE+IE LA Sbjct: 905 EEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERAQAIEREEIERLA 964 Query: 969 RDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQD 1028 +D+DDEQ ILDRN ++RL EIL G+ ++GPKGFKK TV++ +++SE+PRSQWW FA + Sbjct: 965 KDRDDEQAILDRNTFARLAEILTGKTGLAGPKGFKKDTVITREVMSEFPRSQWWLFATAE 1024 Query: 1029 EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGD 1088 + + +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFVA+KR IQ GD Sbjct: 1025 DSLMTEIEAMRKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKIQPGD 1084 Query: 1089 KMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGL 1148 KMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWA GL Sbjct: 1085 KMAGRHGNKGVVSRIVPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWAAAGL 1144 Query: 1149 GKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVST 1208 G++I ++ YK D L++ + V E I+ D++ ++ + + + GVPV+T Sbjct: 1145 GRQISQALDAYKKTNDFKALKASFDAVYEDN---EIIASMDENELVEMGQNLRRGVPVAT 1201 Query: 1209 PVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVY 1268 PVF+GA E I +L A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK++ Sbjct: 1202 PVFNGAKEADIERLLEQAGLHSSGQSTLYDGRTGEPFDRKVTMGYIYMLKLHHLVDDKIH 1261 Query: 1269 ARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRV 1328 ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+V Sbjct: 1262 ARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKV 1321 Query: 1329 YESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAK 1373 YESIV G D FE G PESFNVLVKEM++LGL+++L N++ K Sbjct: 1322 YESIVRGEDNFEAGIPESFNVLVKEMRSLGLNVELINNKVKPGEL 1366 >gi|319407383|emb|CBI81034.1| DNA-directed RNA polymerase, beta chain [Bartonella sp. 1-1C] Length = 1382 Score = 1739 bits (4505), Expect = 0.0, Method: Composition-based stats. Identities = 933/1372 (68%), Positives = 1128/1372 (82%), Gaps = 6/1372 (0%) Query: 1 MAKGVV----FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQ 56 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ R +EGLQ Sbjct: 1 MAQTLAMMSQFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMIEEPEGGRLDEGLQ 60 Query: 57 AAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEF 116 A FKSVFPI+ FSG AMLEFV YEFDPPKFDV++C RDLTYA PLK+ LRLIVFDVDE Sbjct: 61 AVFKSVFPISDFSGTAMLEFVRYEFDPPKFDVEECHQRDLTYAAPLKVILRLIVFDVDED 120 Query: 117 TGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSG 176 TG+K IKDIKEQ +YMGD+PLMT +GTFVI G +R++VSQ+HRSPG+ FDHDKG+ SG Sbjct: 121 TGSKDIKDIKEQGVYMGDMPLMTDNGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSG 180 Query: 177 KLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKI 236 K L+A R+IP +G W+DIEFD+KDI++VRIDRRRK+PVTS LMALGMD+ +ILSTFY K+ Sbjct: 181 KFLFAARVIPYRGSWLDIEFDAKDIVYVRIDRRRKIPVTSLLMALGMDASDILSTFYNKV 240 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFL 296 Y + + W P S D G K+ S LVD D+GE V E+GKKLT K L+EKG+K + Sbjct: 241 SYERTKNGWRIPYSV-DRFRGMKLVSDLVDADSGEVVAEAGKKLTVRAAKLLEEKGLKAI 299 Query: 297 GITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 I+ D L G Y+AEDIVN +TGEIY+EAGD IDEK+L+ + I IL +D +N A Sbjct: 300 EISEDDLLGSYLAEDIVNYQTGEIYLEAGDEIDEKTLKILSDVGADQINILDIDHMNVGA 359 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 YIRNTL DKN+ R+DAL DIYRVMRPG+ T + AE+MF+ LFFD ++YDLS VGRVKM Sbjct: 360 YIRNTLKVDKNESRQDALFDIYRVMRPGEPPTINTAEAMFHSLFFDPERYDLSAVGRVKM 419 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N+R+ LD PD VR +R+EDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR Sbjct: 420 NLRMGLDCPDTVRILRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYR 479 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GLLRMER+IKER+S V+ID++MPQDLINAKP +AV EFF SSQLSQ + N LS IT Sbjct: 480 IGLLRMERAIKERMSLVEIDTIMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEIT 539 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YG Sbjct: 540 HKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG 599 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE+PYRK+ DGKVT +V+YLSAMEE Y+AQANSSLD +G FTEE V CR AGE ++ Sbjct: 600 FIESPYRKIIDGKVTKEVIYLSAMEESKHYVAQANSSLDAEGRFTEEFVVCRHAGEVLMA 659 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 PR+ ID +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAP VGTGME Sbjct: 660 PRDHIDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPLVGTGME 719 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++VA SGAAI AKR GIV+QVDA+RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+ Sbjct: 720 AIVACDSGAAIGAKRGGIVDQVDAMRIVIRATED-LDPSKSGVDIYRLQKFQRSNQSTCI 778 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRPLV VGD + + DIIADG STDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++ Sbjct: 779 NQRPLVHVGDRIEKGDIIADGSSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVAD 838 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV+EE L+N+DE GI+ +GAEV+PGDILVG Sbjct: 839 DVFTSIHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIVYIGAEVHPGDILVG 898 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 KITPKGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER+ Sbjct: 899 KITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERA 958 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEY 1016 +++ERE+IE LA+D+DDEQ ILDR++Y+RL +IL G+ + GPKGF K L S ++ +Y Sbjct: 959 MAIEREEIERLAKDRDDEQSILDRSVYARLADILTGKVTIEGPKGFPKGKTLDSTVMEKY 1018 Query: 1017 PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 PR QWWQFAV+DEK+Q +E+L QY+ SK L+ RF +K+EK+Q GD+MPPGV+++VKV Sbjct: 1019 PRYQWWQFAVEDEKLQNEIEALHKQYDESKKALQRRFMDKVEKVQRGDEMPPGVMKIVKV 1078 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 FVA+KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI Sbjct: 1079 FVAVKRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQI 1138 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 ETHLGWAC G+GKKI LI Y+ GDI PLR +E +I E + YD++S++++ Sbjct: 1139 LETHLGWACAGMGKKIGDLIKLYQETGDILPLRQRIENLIPDDDRNEPVRHYDNESLIKL 1198 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A Q K GV ++TPVFDGA E IN ML A LD SGQ LYDG TGEPFDRPVTVGYIYM Sbjct: 1199 ALQMKQGVSIATPVFDGAHEADINMMLEDAGLDSSGQVTLYDGRTGEPFDRPVTVGYIYM 1258 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1259 LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1318 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 +KSDDV GRT+VYE++V G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VKSDDVAGRTKVYEAVVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDARE 1370 >gi|49474307|ref|YP_032349.1| DNA-directed RNA polymerase subunit beta [Bartonella quintana str. Toulouse] gi|51338825|sp|Q9KJM5|RPOB_BARQU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|49239811|emb|CAF26202.1| DNA-directed RNA polymerase beta chain [Bartonella quintana str. Toulouse] Length = 1383 Score = 1737 bits (4498), Expect = 0.0, Method: Composition-based stats. Identities = 932/1368 (68%), Positives = 1131/1368 (82%), Gaps = 2/1368 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 5 LAMTSQFNGRKRVRKFFGKIPEVTEMPNLIEVQKASYDQFLMIEEPKGGRPDEGLQAVFK 64 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG AMLEFV YEFD PKFDV++C RDLTYA PLK+ LRLIVFDVDE TG+K Sbjct: 65 SVFPISDFSGTAMLEFVGYEFDLPKFDVEECRQRDLTYAAPLKVILRLIVFDVDEDTGSK 124 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 IKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGK L+ Sbjct: 125 DIKDIKEQGVYMGDMPLMTTNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKFLF 184 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDII+ RIDRRRK+P+TS LMALGMD+ +ILSTFY K+ Y + Sbjct: 185 AARVIPYRGSWLDIEFDAKDIIYARIDRRRKIPITSLLMALGMDASDILSTFYNKVTYER 244 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P S G K+ S LVD D+GE V E+GKKLT K+L EKG+K + IT Sbjct: 245 DGDGWRIPYSV-GRFKGVKLISDLVDADSGEVVAEAGKKLTVRAAKALAEKGLKAVKITE 303 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AEDIVN +TGEIY+EAGD IDEK+L+ +F I IL +D +N AYIRN Sbjct: 304 DDLLGSYLAEDIVNYQTGEIYLEAGDEIDEKALKILFDVSADQINILDIDHMNIGAYIRN 363 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ ++DAL DIYRVMRPG+ T A +MF+ LFFD ++YDLS VGRVKMN+R+ Sbjct: 364 TLKVDKNESQQDALFDIYRVMRPGEPPTMDTAAAMFHSLFFDPERYDLSAVGRVKMNLRM 423 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD VR +R+EDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 424 DLDCPDTVRILRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRIGLL 483 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 484 RMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 543 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 544 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 603 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DGKVT +V+YLSAMEE Y+AQANSSLD +G FT+E V CR AGE ++ PR+ Sbjct: 604 PYRKIIDGKVTTEVIYLSAMEESKHYVAQANSSLDAEGRFTDEFVVCRHAGEVLMAPRDH 663 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGMES+VA Sbjct: 664 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMESIVA 723 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAA+ AKR GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 724 RDSGAAVSAKRGGIVDQVDATRIVIRATED-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 782 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD V + +IIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 783 LVHVGDRVEKGNIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFT 842 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNV+EE L+N+DE GII +GAEV PGDILVGKITP Sbjct: 843 SIHIEEFEVAARDTKLGPEEITRDIPNVAEESLRNLDEAGIIYIGAEVQPGDILVGKITP 902 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 903 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGAFGTVVEVRVFNRHGVEKDERAMAIE 962 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y+RL ++L G+ AV GPKGF K L + ++ YPRSQ Sbjct: 963 REEIERLAKDRDDEQSILDRNVYARLTDMLTGKIAVEGPKGFSKGKKLDNTIMGHYPRSQ 1022 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQF V+DEK+Q +E+L+ QY+ SK L+ RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1023 WWQFTVEDEKLQSEIEALRRQYDESKEALQRRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1082 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1083 KRKIQPGDKMAGRHGNKGVVSRILPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1142 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ GDI PLR +E ++ H E + YD++S+ ++A Q Sbjct: 1143 LGWACAGMGKKIGDLVDLYQETGDIFPLRQRIENLMPDNDHNEPVRQYDNESLYKLALQM 1202 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GV ++TPVFDGA E IN ML ADLD SGQ +LYDG TGEPFDRPVTVGYIYMLKL+ Sbjct: 1203 RKGVSIATPVFDGAHEADINMMLEDADLDSSGQVVLYDGRTGEPFDRPVTVGYIYMLKLH 1262 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1263 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1322 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++L L+++L+++R Sbjct: 1323 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLALNVELDDARE 1370 >gi|8895200|gb|AAF80850.1|AF165994_1 RNA polymerase beta subunit [Bartonella quintana] Length = 1383 Score = 1736 bits (4497), Expect = 0.0, Method: Composition-based stats. Identities = 932/1368 (68%), Positives = 1132/1368 (82%), Gaps = 2/1368 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQA FK Sbjct: 5 LAMTSQFNGRKRVRKFFGKIPEVTEMPNLIEVQKASYDQFLMIEEPKGGRPDEGLQAVFK 64 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FSG AMLEFV YEFD PKFDV++C RDLTYA PLK+ LRLIVFDVDE TG+K Sbjct: 65 SVFPISDFSGTAMLEFVGYEFDLPKFDVEECRQRDLTYAAPLKVILRLIVFDVDEDTGSK 124 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 IKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG++ SGK L+ Sbjct: 125 DIKDIKEQGVYMGDMPLMTTNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKFLF 184 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP++G W+DIEFD+KDII+ RIDRRRK+P+TS LMALGMD+ +ILSTFY K+ Y + Sbjct: 185 AARVIPNRGSWLDIEFDAKDIIYARIDRRRKIPITSLLMALGMDASDILSTFYNKVTYER 244 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 GD W P S G K+ S LVD D+GE V E+GKKLT K+L EKG+K + IT Sbjct: 245 DGDGWRIPYSV-GRFKGVKLISDLVDADSGEVVAEAGKKLTVRAAKALAEKGLKAVKITE 303 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G Y+AEDIVN +TGEIY+EAGD IDEK+L+ +F I IL +D +N AYIRN Sbjct: 304 DDLLGSYLAEDIVNYQTGEIYLEAGDEIDEKALKILFDVSADQINILDIDHMNIGAYIRN 363 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ ++DAL DIYRVMRPG+ T A +MF+ LFFD ++YDLS VGRVKMN+R+ Sbjct: 364 TLKVDKNESQQDALFDIYRVMRPGEPPTMDTAAAMFHSLFFDPERYDLSAVGRVKMNLRM 423 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD VR +R+EDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 424 DLDCPDTVRILRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRIGLL 483 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 484 RMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 543 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 544 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 603 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRK+ DGKVT +V+YLSAMEE Y+AQANSSLD +G FT+E V CR AGE ++ PR+ Sbjct: 604 PYRKIIDGKVTTEVIYLSAMEESKHYVAQANSSLDAEGRFTDEFVVCRHAGEVLMAPRDH 663 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGMES+VA Sbjct: 664 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMESIVA 723 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAA+ AKR GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRP Sbjct: 724 RDSGAAVSAKRGGIVDQVDATRIVIRATED-LDPSKSGVDIYRLQKFQRSNQSTCINQRP 782 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV VGD V + +IIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++DVFT Sbjct: 783 LVHVGDRVEKGNIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFT 842 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEV ARDTKLGPEEITRDIPNV+EE L+N+DE GII +GAEV PGDILVGKITP Sbjct: 843 SIHIEEFEVAARDTKLGPEEITRDIPNVAEESLRNLDEAGIIYIGAEVQPGDILVGKITP 902 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++E Sbjct: 903 KGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGAFGTVVEVRVFNRHGVEKDERAMAIE 962 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y+RL ++L G+ AV GPKGF K L + ++ YPRSQ Sbjct: 963 REEIERLAKDRDDEQSILDRNVYARLTDMLTGKIAVEGPKGFSKGKKLDNTIMGHYPRSQ 1022 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQF V+DEK+Q +E+L+ QY+ SK L+ RF +K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1023 WWQFTVEDEKLQSEIEALRRQYDESKEALQRRFMDKVEKVQRGDEMPPGVMKMVKVFVAV 1082 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETH Sbjct: 1083 KRKIQPGDKMAGRHGNKGVVSRILPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETH 1142 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+GKKI L++ Y+ GDI PLR +E ++ H E + YD++S+ ++A Q Sbjct: 1143 LGWACAGMGKKIGDLVDLYQETGDIFPLRQRIENLMPDNDHNEPVRQYDNESLYKLALQM 1202 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GV ++TPVFDGA E IN ML ADLD SGQ +LYDG TGEPFDRPVTVGYIYMLKL+ Sbjct: 1203 RKGVSIATPVFDGAHEADINMMLEDADLDSSGQVVLYDGRTGEPFDRPVTVGYIYMLKLH 1262 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1263 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1322 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++L L+++L+++R Sbjct: 1323 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLALNVELDDARE 1370 >gi|319405856|emb|CBI79488.1| DNA-directed RNA polymerase, beta chain [Bartonella sp. AR 15-3] Length = 1382 Score = 1736 bits (4496), Expect = 0.0, Method: Composition-based stats. Identities = 932/1372 (67%), Positives = 1127/1372 (82%), Gaps = 6/1372 (0%) Query: 1 MAKGVV----FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQ 56 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ R +EGLQ Sbjct: 1 MAQTLAMMSQFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMIEEPEGGRLDEGLQ 60 Query: 57 AAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEF 116 A FKSVFPI+ FSG AMLEFV YEFDPPKFDV++C RDLTYA PLK+ LRLIVFDVDE Sbjct: 61 AVFKSVFPISDFSGTAMLEFVRYEFDPPKFDVEECHQRDLTYAAPLKVILRLIVFDVDED 120 Query: 117 TGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSG 176 TG+K IKDIKEQ +YMGD+PLMT +GTFVI G +R++VSQ+HRSPG+ FDHDKG+ SG Sbjct: 121 TGSKDIKDIKEQGVYMGDMPLMTHNGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSG 180 Query: 177 KLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKI 236 K L+A R+IP +G W+DIEFD+KDI++VRIDRRRK+PVTS LMALGMD+ +ILSTFY KI Sbjct: 181 KFLFAARVIPYRGSWLDIEFDAKDIVYVRIDRRRKIPVTSLLMALGMDASDILSTFYNKI 240 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFL 296 Y + + W S D G K+ S LVD D+GE V E+GKKLT K L+EKG+K + Sbjct: 241 SYERTKNGWRISYSV-DRFKGMKLVSDLVDADSGEVVAEAGKKLTVRAAKLLEEKGLKAI 299 Query: 297 GITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 I+ D L G Y+AEDIVN +TGEIY+EAGD IDEK+L+ + I IL +D +N A Sbjct: 300 EISEDDLLGAYLAEDIVNYQTGEIYLEAGDEIDEKTLKILSDVGADQINILDIDHMNIGA 359 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 YIRNTL DKN+ R+DAL DIYRVMRPG+ T + AE+MF+ LFFD ++YDLS VGRVKM Sbjct: 360 YIRNTLKIDKNESRQDALFDIYRVMRPGEPPTINTAEAMFHSLFFDPERYDLSAVGRVKM 419 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N+R+ LD PD VR +R+EDI+A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR Sbjct: 420 NLRMGLDCPDTVRVLRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYR 479 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GLLRMER+IKER+S V+ID++MPQDLINAKP +AV EFF SSQLSQ + N LS IT Sbjct: 480 IGLLRMERAIKERMSLVEIDTIMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEIT 539 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YG Sbjct: 540 HKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG 599 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE+PYRK+ DGKVT +V+YLSAMEE Y+AQANSSLD +G FTEE V CR AGE ++ Sbjct: 600 FIESPYRKIIDGKVTKEVIYLSAMEESKHYVAQANSSLDTEGRFTEEFVVCRHAGEVLMA 659 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 PR+ ID +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAP VGTGME Sbjct: 660 PRDHIDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPLVGTGME 719 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++VA SGAAI AKR GIV+QVDA+RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+ Sbjct: 720 AIVACDSGAAIGAKRGGIVDQVDAMRIVIRATED-LDPSKSGVDIYRLQKFQRSNQSTCI 778 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRPLV VGD + + DIIADG STDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++ Sbjct: 779 NQRPLVHVGDRIEKGDIIADGSSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVAD 838 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV+EE L+N+DE GI+ +GAEV+PGDILVG Sbjct: 839 DVFTSIHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIVYIGAEVHPGDILVG 898 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 KITPKGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER+ Sbjct: 899 KITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERA 958 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEY 1016 +++ERE+IE LA+D+DDEQ ILDR++Y+RL +IL G+ + GPKGF K L S ++ +Y Sbjct: 959 MAIEREEIERLAKDRDDEQSILDRSVYARLADILTGKVVIEGPKGFPKGKTLDSTVMEQY 1018 Query: 1017 PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 PR QWWQFAV+DEK+Q +E+L QY+ SK L+ RF +K+EK+Q GD+MPPGV+++VKV Sbjct: 1019 PRYQWWQFAVEDEKLQSEIEALHKQYDESKKALQRRFMDKVEKVQRGDEMPPGVMKIVKV 1078 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 FVA+KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI Sbjct: 1079 FVAVKRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQI 1138 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 ETHLGWAC G+GKKI LI Y+ GDISPLR +E +I E + YD++S+ ++ Sbjct: 1139 LETHLGWACAGMGKKIGDLIELYQKTGDISPLRQRIENIIPDDDRNEPVRHYDNESIFKL 1198 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A Q ++GV ++TPVFDGA E IN ML A LD SGQ LYDG TGE FDRPVTVGYIYM Sbjct: 1199 ALQMRNGVSIATPVFDGAHEADINMMLEDAGLDSSGQVTLYDGRTGEAFDRPVTVGYIYM 1258 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1259 LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1318 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 +KSDDV GRT+VYE++V G+DTFE G PESFNVLVKEM++LGL+++L+++R Sbjct: 1319 VKSDDVAGRTKVYEAVVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDARE 1370 >gi|144900874|emb|CAM77738.1| DNA-directed RNA polymerase beta chain [Magnetospirillum gryphiswaldense MSR-1] Length = 1393 Score = 1736 bits (4496), Expect = 0.0, Method: Composition-based stats. Identities = 851/1394 (61%), Positives = 1069/1394 (76%), Gaps = 31/1394 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + G RVRK FG+ P + +P+LIEVQK+SYDHFL M P++R N GLQ FKSV Sbjct: 1 MAKSYTGRKRVRKSFGRIPTVAPMPNLIEVQKSSYDHFLQMETLPEKRTNVGLQEVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI FS LEFV YE + PK+DV++C R +T+A PLK+TLRL+V+D+DE TGA+SI Sbjct: 61 FPIKDFSERGTLEFVKYELEQPKYDVEECQQRGMTFAAPLKVTLRLVVWDIDEDTGARSI 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DIKEQ +YMGD+PLMT +GTFVI G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 121 RDIKEQDVYMGDMPLMTANGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL--------------------- 221 R+IP +G W+D EFD+KD+++VRIDRRRK+PVT+ L AL Sbjct: 181 RVIPYRGSWLDFEFDAKDLVYVRIDRRRKLPVTTLLYALDNNATQDLRASRKADSRPVDL 240 Query: 222 ----GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESG 277 GM SE+IL+ FY VY++ W A + M G K+ L+D TGE+V E+G Sbjct: 241 TELKGMTSEDILNYFYETTVYTRGPKGWKTAF-APERMKGIKLVYDLIDAKTGEKVAEAG 299 Query: 278 KKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIF 337 K+T L K L+E+GV+ + + + L G Y AED++N +TGEIYIEAG + L ++ Sbjct: 300 AKMTPRLGKKLREQGVEDILVLPEDLVGQYAAEDLINEKTGEIYIEAGHELTAAVLADLE 359 Query: 338 HSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFN 397 + ++P L +D +N YIRNTL DKN R++AL+DIYRVMRPG+ T AE++F Sbjct: 360 KLGVTELPCLAIDHINVGPYIRNTLSVDKNSSREEALIDIYRVMRPGEPPTLETAEALFQ 419 Query: 398 FLFFDSDKYDLSTVGRVKMNMRLN---LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTID 454 LFFD ++YDLS VGRVKMN RLN D PD VR +R++DI+A+IKILV+L++GKG ID Sbjct: 420 GLFFDEERYDLSAVGRVKMNSRLNFTEKDVPDTVRVLRRDDILAVIKILVELKDGKGEID 479 Query: 455 DIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVC 514 DID+LGNRRVRSVGE+++NQYR+GLLRMER+I+ER+SSVDIDSVMP DLINAKP +AV Sbjct: 480 DIDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDSVMPHDLINAKPAAAAVR 539 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 EFF SSQLSQ + N LS ITH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET Sbjct: 540 EFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIET 599 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSL 634 EG NIGL++SL ++ARVN YGFIE PYRKV DGKVT++V Y+SA EE IAQANS+L Sbjct: 600 PEGPNIGLINSLATYARVNQYGFIEAPYRKVIDGKVTDEVQYMSANEEGRYTIAQANSTL 659 Query: 635 DEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 D +G F +LV CR AGE ++VP +I ID SPKQ+VS+AA+LIPFLENDD+NR LMG Sbjct: 660 DAEGRFVHDLVSCRQAGEFVMVPPGEITMIDVSPKQLVSVAAALIPFLENDDANRALMGS 719 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDP 754 NMQRQAVPL++AEAP VGTGME VA+ SGAAI AKR GIV+QVDA R+VIR+ E Sbjct: 720 NMQRQAVPLIRAEAPLVGTGMEQAVARDSGAAITAKRTGIVDQVDATRVVIRATEDMA-A 778 Query: 755 STSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVA 814 + SGVDIY L+KFQRSNQNTC+ Q+PLVKVGD +R+ DIIADGPST LG+LALGRN+LVA Sbjct: 779 TESGVDIYNLLKFQRSNQNTCITQKPLVKVGDIIRKGDIIADGPSTQLGELALGRNVLVA 838 Query: 815 FMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLK 874 FMPW+GYNFEDS+LISER+V +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE LK Sbjct: 839 FMPWNGYNFEDSILISERIVRDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALK 898 Query: 875 NIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSG 934 N+DE GI+ +GAEV PGDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G Sbjct: 899 NLDEAGIVYIGAEVKPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPG 958 Query: 935 VSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 V+GT+V+VR+F+R G++K+ER++++ER +IE LA+D+DDE+ IL+R+ +RL ++L GQ Sbjct: 959 VAGTIVEVRVFSRRGVEKDERALAIERSEIERLAKDRDDERGILERSFMARLRQLLIGQK 1018 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 VSGPKG K + L+ ++++E S W AV+D+ V +VE LK ++ + L+DRF+ Sbjct: 1019 VVSGPKGVKANAALTEEMLAELHLSAWRNIAVEDDAVMSDVEQLKRAFDMAVERLQDRFE 1078 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 NK+EK+Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG++SRI+P EDMP+L+D Sbjct: 1079 NKVEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRIMPLEDMPYLED 1138 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK-ANGDISPLRSFLE 1173 G VDIVLNPLGVPSRMNVGQI ETHLGWA GLG++I ++ Y+ + LR L+ Sbjct: 1139 GQQVDIVLNPLGVPSRMNVGQILETHLGWASAGLGQQIGRVLEGYRHNTATVEDLRGTLK 1198 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 G ++++I+D DD VL + + G+P +TPVFDGA E I ML A SGQ Sbjct: 1199 NFYGDDIYSDEIADLKDDEVLELGNNLRPGIPFATPVFDGARESDICDMLDKAGRHRSGQ 1258 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 L+DG TG+PFDR VTVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1259 VTLFDGRTGDPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQR 1318 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV G+D FE G PESFNVLVKE Sbjct: 1319 FGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDNFEAGIPESFNVLVKE 1378 Query: 1354 MQALGLSIDLENSR 1367 +++LGL+++L Sbjct: 1379 LRSLGLNVELTQRD 1392 >gi|197104684|ref|YP_002130061.1| DNA-directed RNA polymerase, beta subunit [Phenylobacterium zucineum HLK1] gi|226699426|sp|B4R8K5|RPOB_PHEZH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|196478104|gb|ACG77632.1| DNA-directed RNA polymerase, beta subunit [Phenylobacterium zucineum HLK1] Length = 1356 Score = 1735 bits (4493), Expect = 0.0, Method: Composition-based stats. Identities = 854/1364 (62%), Positives = 1071/1364 (78%), Gaps = 8/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK FG+ PE + +P+LIEVQ++SY+ FL + ER +EG++A FKSV Sbjct: 1 MAQSFTGKKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQREVRAGERRDEGIEAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LE+VSYEF+ PK+DV++C+ RD+TYA PLK+ LRLIVF+ DE TGA+S+ Sbjct: 61 FPIKDFNERAVLEYVSYEFEEPKYDVEECVQRDMTYAAPLKVKLRLIVFETDEETGARSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT+ GTF++ G QR++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYMGDIPLMTEKGTFIVNGTQRVIVSQMHRSPGVFFDHDKGKTHASGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KDI++VRIDRRRK+P T+FLMALGMD EEILSTFY + Y ++G Sbjct: 181 RVIPYRGSWLDFEFDAKDIVYVRIDRRRKLPATTFLMALGMDGEEILSTFYETVPYEKKG 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D W P G K L+D DTGE++ +G+K+++ K + G+K L + + Sbjct: 241 DGWATPYKPE-RWRGVKPEFPLIDADTGEEIAPAGQKISARNAKKFADNGLKTLLLAPEA 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G Y+A+D+VN ETGEIY EAGD +D L + + +L +D V AYIRNTL Sbjct: 300 LTGRYLAKDLVNFETGEIYAEAGDELDPTLLAALEEQGFTTLDVLDIDEVTVGAYIRNTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN R+DAL DIYRVMRPG+ T AE+MF LFFDS++YDLS+VGRVKMNMRL L Sbjct: 360 RVDKNTAREDALFDIYRVMRPGEPPTVEAAEAMFKSLFFDSERYDLSSVGRVKMNMRLEL 419 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D PDDVR IRKED+IA++ LV LR+G+G IDDIDNLGNRRVRSVGE+L+NQYR+GLLRM Sbjct: 420 DCPDDVRVIRKEDVIAVLLTLVGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRM 479 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+SSVDID+VMP DLINAKP +AV EFF SSQLSQ + N LS ITH RRLS Sbjct: 480 ERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS 539 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + A VN YGFIE+PY Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHAVVNKYGFIESPY 599 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R++ DGK T++VVY+SAMEE IAQAN L E+G E+LV R GE L+P+ +D Sbjct: 600 RRIRDGKTTDEVVYMSAMEEAKHVIAQANIKL-ENGEIVEDLVPGRINGEPSLLPKADVD 658 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLENDD+NR LMG NMQ+QAVPL++++AP VGTGMES+VA Sbjct: 659 LMDVSPKQVVSVAASLIPFLENDDANRALMGSNMQKQAVPLIQSDAPLVGTGMESIVAVD 718 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA +VA+R G+VEQ+D RIV+R+ E DPS GVDIYRL KFQRSN +TC+NQRPLV Sbjct: 719 SGAVVVARRTGVVEQIDGTRIVVRATEE-TDPSKPGVDIYRLQKFQRSNTSTCINQRPLV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +VGD++ D+IADGPST+LG+LALGRN LVAFMPW+GYNFEDS+LISER+V +DVFTSI Sbjct: 778 RVGDKINAGDVIADGPSTELGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVFTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFEVMARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 838 HIEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P GVSGT+V+VR+FNRHG+DK+ER++++ER Sbjct: 898 ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTIVEVRVFNRHGVDKDERALAIERA 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +I+ L +D+DDE IL+RN+ RL ++L G+ AVSGPKG + ++++ + E WW Sbjct: 958 EIDRLGKDRDDEFAILNRNMQGRLRQLLVGKTAVSGPKGLGRGE-ITAEKLEEIAPGLWW 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 Q A+ DEK +E+L+ Q++ ++ L+ RF++K++K+Q GD++PPGV+++VKVFVA+KR Sbjct: 1017 QIALDDEKAMGELEALRKQFDDARKRLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++S+ILP EDMP+L+DGT VDIVLNPLGVPSRMNVGQIFETHLG Sbjct: 1077 KLQPGDKMAGRHGNKGVISKILPIEDMPYLEDGTSVDIVLNPLGVPSRMNVGQIFETHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLGK+++ L+ D++ G L L V G ++ ++ +A Sbjct: 1137 WAAAGLGKQVQRLLEDWQHGGQKQALIEHLRDVYGPDEELPD----TEEELVELARNLSK 1192 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P +TPVFDGA + I ++L A LD SGQS LYDG +GE F RPVTVGYIYMLKL+H+ Sbjct: 1193 GIPFATPVFDGAHIDDIENLLEKAGLDRSGQSYLYDGQSGERFKRPVTVGYIYMLKLHHL 1252 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1253 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1312 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT+VYESIV G+DTFE G PESFNVLVKEM++LGL+++LENS Sbjct: 1313 AGRTKVYESIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENS 1356 >gi|209964030|ref|YP_002296945.1| DNA-directed RNA polymerase subunit beta [Rhodospirillum centenum SW] gi|226699437|sp|B6IRP6|RPOB_RHOCS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|209957496|gb|ACI98132.1| DNA-directed RNA polymerase, beta subunit [Rhodospirillum centenum SW] Length = 1397 Score = 1733 bits (4489), Expect = 0.0, Method: Composition-based stats. Identities = 834/1394 (59%), Positives = 1063/1394 (76%), Gaps = 35/1394 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK FG+ PE+ +P+LIEVQ++SYDHFL M++ P++R N GLQ F+SV Sbjct: 1 MAKSFTGRKRIRKSFGRIPEVTRMPNLIEVQRSSYDHFLQMDVPPEKRANVGLQEVFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI FS A+L+FV YE + PK+DV++C R +T+A PLK+TLRL VFDVDE TG +SI Sbjct: 61 FPIKDFSERAVLDFVRYELEQPKYDVEECQQRGMTFAAPLKVTLRLTVFDVDEDTGLRSI 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DIKEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 121 RDIKEQDVYMGDMPLMTANGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL--------------------- 221 R+IP +G W+D EFD+KDI++VRIDRRRK+P T+ L AL Sbjct: 181 RVIPYRGSWLDFEFDAKDIVYVRIDRRRKLPATTLLYALDGADSAELRAERRALGKDLLP 240 Query: 222 ----GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESG 277 GM EEIL FY I Y + D W A M G K+ + LVD TGE + Sbjct: 241 YEAQGMAKEEILGYFYETITYQRAADGWKTGFDAE-RMKGQKLLTDLVDARTGEVLASRD 299 Query: 278 KKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIF 337 KLT L++ L+++G++ + + + + G Y+A DI++ +TGE+ EAGD + +LE + Sbjct: 300 TKLTPRLIRKLQDQGLQEIKVAIEDIIGRYLAIDIIDEKTGEVIYEAGDELSATALERLE 359 Query: 338 HSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFN 397 + ++P+L VD +N AYIRNT+ D+N R+DAL+DIYRVMRPG+ T AE++F Sbjct: 360 KMGVEELPVLNVDHLNIGAYIRNTMAADRNASREDALIDIYRVMRPGEPPTLESAEALFA 419 Query: 398 FLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDID 457 LFFD ++YDLS VGRVKMN RL +T D +R +RKEDI+ I+KILV+L++G+G IDDID Sbjct: 420 GLFFDQERYDLSAVGRVKMNARLGFETDDQMRVLRKEDILKILKILVELKDGRGEIDDID 479 Query: 458 NLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFF 517 +LGNRRVRSVGE+++NQYR+GLLRMER+I+ER+SSV+ID+VMP DLINAKP +AV EFF Sbjct: 480 HLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVEIDTVMPHDLINAKPAAAAVREFF 539 Query: 518 CSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEG 577 SSQLSQ + N LS ITH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG Sbjct: 540 GSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEG 599 Query: 578 HNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDED 637 NIGL++SL ++ARVN YGFIE+PYRKV DG+VT++VVYLSAMEE +A+AN+ LD Sbjct: 600 PNIGLINSLATYARVNQYGFIESPYRKVIDGRVTDEVVYLSAMEEGRYTVAEANAPLDAG 659 Query: 638 GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQ 697 F + LV CR GE +LV + ID ID SPKQ+VS+AA+LIPFLENDD+NR LMG NMQ Sbjct: 660 NRFADPLVSCRKGGEYLLVRPDMIDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQ 719 Query: 698 RQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTS 757 RQAVPL+KA++P VGTGME+ VA+ SG IV +RAGIV+QVDA RIVIR+ E DP+ Sbjct: 720 RQAVPLIKADSPLVGTGMEATVARDSGVTIVTRRAGIVDQVDATRIVIRATEDT-DPAAP 778 Query: 758 GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMP 817 GVDIY L+KFQRSNQNTC+NQ+PLVKVGD V++ DIIADGPSTDLG+LALGRN+LVAFMP Sbjct: 779 GVDIYNLLKFQRSNQNTCINQKPLVKVGDRVQKGDIIADGPSTDLGELALGRNVLVAFMP 838 Query: 818 WHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNID 877 W+GYNFEDS+LISER+V +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE LKN+D Sbjct: 839 WNGYNFEDSILISERIVRDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNLD 898 Query: 878 ECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSG 937 E GI+ +GAEV PGDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+G Sbjct: 899 EAGIVYIGAEVRPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAG 958 Query: 938 TVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 TVV+VR+F+R G+DK+ER++++ER +IE LA+D+DDE+ IL+R+ Y+RL E+L GQ +VS Sbjct: 959 TVVEVRVFSRRGVDKDERALAIERAEIEKLAKDRDDEKAILERSFYTRLKELLLGQTSVS 1018 Query: 998 GPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKI 1057 GPKG K ++ + ++ R QW +V++++V +E ++ S L++RF+NK+ Sbjct: 1019 GPKGMKGGETITDETLAGLTRGQWRHISVENDQVMEIIEQTGKVFDDSVQRLQERFENKV 1078 Query: 1058 EKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTP 1117 EK+Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG++SRI P EDMP+L+DG Sbjct: 1079 EKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRITPIEDMPYLEDGRN 1138 Query: 1118 VDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK--------ANGDISPLR 1169 VDIVLNPLGVPSRMNVGQI ETHLGWA G+G++I +++ + L+ Sbjct: 1139 VDIVLNPLGVPSRMNVGQILETHLGWAAAGIGRQIGEMLDRMRAATVEAADKARTAEDLK 1198 Query: 1170 SFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLD 1229 L + G + I+ + ++ +A + G+P +TPVFDGA E+ I ML A LD Sbjct: 1199 ERLRSIYGEAVYESDIAPMSEAQLMELAGNLRRGIPFATPVFDGAREDDICRMLEAAGLD 1258 Query: 1230 ESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNR 1289 SGQS L DG TGEPFDR VTVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ Sbjct: 1259 RSGQSTLIDGRTGEPFDRRVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQF 1318 Query: 1290 GGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV G+D FE G PESFNV Sbjct: 1319 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDNFEAGIPESFNV 1378 Query: 1350 LVKEMQALGLSIDL 1363 LVKE+++LGL+++L Sbjct: 1379 LVKELRSLGLNVEL 1392 >gi|319899056|ref|YP_004159149.1| DNA-directed RNA polymerase, beta chain [Bartonella clarridgeiae 73] gi|319403020|emb|CBI76575.1| DNA-directed RNA polymerase, beta chain [Bartonella clarridgeiae 73] Length = 1382 Score = 1732 bits (4486), Expect = 0.0, Method: Composition-based stats. Identities = 928/1370 (67%), Positives = 1124/1370 (82%), Gaps = 6/1370 (0%) Query: 1 MAKGVV----FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQ 56 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ R +EGLQ Sbjct: 1 MAQTLAMMSQFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMIEEPEGGRLDEGLQ 60 Query: 57 AAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEF 116 A FKSVFPI+ FSG AMLEFV YEFD PKFDV++C RDLTYA PLK+ LRLIVFDVDE Sbjct: 61 AVFKSVFPISDFSGTAMLEFVRYEFDSPKFDVEECRQRDLTYAAPLKVILRLIVFDVDED 120 Query: 117 TGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSG 176 TG+K IKDIKEQ +YMGD+PLMT +GTFVI G +R++VSQ+HRSPG+ FDHDKG+ SG Sbjct: 121 TGSKDIKDIKEQGVYMGDMPLMTHNGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSG 180 Query: 177 KLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKI 236 K L+A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTS LMALGMD+ +ILSTFY K+ Sbjct: 181 KFLFAARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDASDILSTFYNKV 240 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFL 296 Y + W P S D G K+ S LVD D+GE V E+GKKLT + L+EKG+K + Sbjct: 241 TYECAKNGWRIPYSV-DRFKGMKLISDLVDADSGEVVAEAGKKLTVRTARLLEEKGLKAI 299 Query: 297 GITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 I+ D L G Y+AEDIVN +TGEIY+EAGD IDEK+L+ + I IL +D +N A Sbjct: 300 EISEDDLLGSYLAEDIVNYQTGEIYLEAGDEIDEKALKILSDVGADQINILDIDHMNVGA 359 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 YIRNTL DKN+ R+DAL DIYRVMRPG+ T + AE+MF+ LFFD ++YDLS VGRVKM Sbjct: 360 YIRNTLKMDKNESRQDALFDIYRVMRPGEPPTINTAEAMFHSLFFDPERYDLSAVGRVKM 419 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N+R+ LD PD VR +R+EDIIA++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR Sbjct: 420 NLRMGLDCPDTVRILRQEDIIAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYR 479 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GLLRMER+IKER+S V+ID++MPQDLINAKP +AV EFF SSQLSQ + N LS IT Sbjct: 480 IGLLRMERAIKERMSLVEIDTIMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEIT 539 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YG Sbjct: 540 HKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG 599 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE+PYRK+ DG+VT +V+YLSAMEE Y+AQANSSLD +G FTEE V CR AGE ++ Sbjct: 600 FIESPYRKIVDGRVTKEVIYLSAMEESKHYVAQANSSLDVEGRFTEEFVVCRHAGEVLMA 659 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 PR+ ID +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAP VGTGME Sbjct: 660 PRDHIDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPLVGTGME 719 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++VA SGAAI AKR GIV+QVDA+RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+ Sbjct: 720 AIVACDSGAAIGAKRGGIVDQVDAMRIVIRATED-LDPSKSGVDIYRLQKFQRSNQSTCI 778 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRPLV VGD + + DIIADG STDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++ Sbjct: 779 NQRPLVHVGDRIEKGDIIADGSSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVAD 838 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV+EE L+N+DE GI+ +GAEV+PGDILVG Sbjct: 839 DVFTSIHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIVYIGAEVHPGDILVG 898 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 KITPKGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER+ Sbjct: 899 KITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERA 958 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEY 1016 +++ERE+IE LA+D+DDEQ ILDR++Y+RL +IL G+ A+ GPKGF K L S ++ +Y Sbjct: 959 MAIEREEIERLAKDRDDEQSILDRSVYARLADILTGKIAIEGPKGFSKGKTLDSTIMEQY 1018 Query: 1017 PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 PR QWWQF ++DEK+Q +E+L QY+ SK L+ RF +K+EK+Q GD+MPPGV+++VKV Sbjct: 1019 PRYQWWQFVIEDEKIQSEIEALHKQYDESKKALQCRFMDKVEKVQRGDEMPPGVMKIVKV 1078 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 FVA+KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI Sbjct: 1079 FVAVKRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQI 1138 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 ETHLGWAC G+GKKI LI Y+ +GDI PLR +E +I E + YD++S+ ++ Sbjct: 1139 LETHLGWACAGMGKKIGDLIELYQESGDILPLRQRIENLIPDDERNEPVRHYDNESIFKL 1198 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A Q K GV ++TPVFDGA E IN ML A LD SGQ LYDG TGEPFDRPVTVGYIYM Sbjct: 1199 ALQMKKGVSIATPVFDGAHEADINMMLEDAGLDSSGQVTLYDGRTGEPFDRPVTVGYIYM 1258 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1259 LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1318 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +KSDDV GRT+VYE++V G+DTFE G PESFNVLVKEM++LGL+++L+++ Sbjct: 1319 VKSDDVAGRTKVYEAVVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDA 1368 >gi|36333373|gb|AAP75744.1| RNA polymerase beta subunit [Bosea sp. 7F] Length = 1373 Score = 1731 bits (4482), Expect = 0.0, Method: Composition-based stats. Identities = 880/1365 (64%), Positives = 1100/1365 (80%), Gaps = 5/1365 (0%) Query: 9 GLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF 68 G RVRKFFGK E+ ++P+LIEVQKASYD FLM+ R +EGLQ+ FKSVFPI F Sbjct: 7 GRRRVRKFFGKLKEVAEMPNLIEVQKASYDQFLMVEEPKGGRGDEGLQSVFKSVFPIGDF 66 Query: 69 SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +GA++LEFV Y F+ PK+DVD+C R LT++ PLK+TLRLIVFD+D T AKS+KDIKEQ Sbjct: 67 AGASLLEFVKYTFEAPKYDVDECRQRGLTFSAPLKVTLRLIVFDIDPDTQAKSVKDIKEQ 126 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A RIIP + Sbjct: 127 DVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFASRIIPYR 186 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+DIEFD+KDI++ RIDR+RK+PVTS L ALGMD EEIL+ FY +++Y++ D W P Sbjct: 187 GSWLDIEFDAKDIVYARIDRKRKIPVTSLLFALGMDGEEILNRFYDRVLYTRDKDGWRVP 246 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 A M G K + L++ DTGE V+E+GKKL + + L EKG+KFL T + L Y+ Sbjct: 247 YDAE-RMKGFKANEDLINADTGEVVLEAGKKLVARTARQLAEKGLKFLRATDEDLYTQYI 305 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AED+VN TGE++ EAG+ I+EK L+ + +IP+L +D +N YIRNTL DKN Sbjct: 306 AEDLVNPATGEVFAEAGEEINEKLLKLLVDEGFDEIPVLDIDHINVGPYIRNTLNVDKNS 365 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 R++AL DIYRVMRPG+ T AE+MF LFFD ++YDLS VGRVKMNMRL+LD D V Sbjct: 366 RREEALFDIYRVMRPGEPPTLETAENMFQSLFFDPERYDLSAVGRVKMNMRLDLDAEDTV 425 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 R +RKEDI A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYRLGLLRMER+IKE Sbjct: 426 RVLRKEDIFAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLLRMERAIKE 485 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RRLSALG GG Sbjct: 486 RMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGG 545 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 + R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYR++ DG Sbjct: 546 LTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRRIRDG 605 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 K T++++YLSAMEE +AQAN+++D +G T++L+ CR AGE I+ P +K+DF D SP Sbjct: 606 KQTDEIIYLSAMEEAKYNVAQANAAVDAEGRLTDDLIVCRRAGEVIVTPVDKVDFQDVSP 665 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 KQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++A+APFVGTGME+VVA+ SGAAI Sbjct: 666 KQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAVVARDSGAAIA 725 Query: 729 AKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEV 788 A+RAG+V+QVDA RIVIR+ + DP+ GVDIYRL KFQRSNQ+TC+ QRPLV+ GD + Sbjct: 726 ARRAGVVDQVDATRIVIRATDE-KDPTKPGVDIYRLQKFQRSNQSTCITQRPLVRAGDVI 784 Query: 789 RRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFE 848 ++ DI+ADGPST+ G+LALGRN+LVAFMPW+GYNFEDS+L+SE++VSEDVFTSIHIEEFE Sbjct: 785 KKGDIVADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSEKIVSEDVFTSIHIEEFE 844 Query: 849 VMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTP 908 VMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKITPKGESPMTP Sbjct: 845 VMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVAAGDILVGKITPKGESPMTP 904 Query: 909 EEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLA 968 EEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+ ++ERE+IE LA Sbjct: 905 EEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERAQAIEREEIERLA 964 Query: 969 RDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQD 1028 +D+DDEQ ILDRN ++RL EIL G+ V+GPKGFKK TV+S +++SE+PRSQWW FA D Sbjct: 965 KDRDDEQAILDRNTFARLAEILTGKTGVAGPKGFKKDTVISREVMSEFPRSQWWLFATAD 1024 Query: 1029 EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGD 1088 + + +E+++ QY+ SK LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ GD Sbjct: 1025 DALMTEIEAMRKQYDESKKRLEQRFLDKVEKLQRGDEMPPGVMKMVKVFVAVKRKIQPGD 1084 Query: 1089 KMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGL 1148 KMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWA GL Sbjct: 1085 KMAGRHGNKGVVSRIVPAEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWAAAGL 1144 Query: 1149 GKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVST 1208 GK+I ++ Y+ + D + L++ + + G + + ++ + + + GVP++T Sbjct: 1145 GKQISQALDAYRKSSDFTALKNSFDAIYGDND---IVGSMSETELVEMGQNLRRGVPIAT 1201 Query: 1209 PVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVY 1268 PVF+GA E I ++L A L++SGQ LYDG TGEPFDR VTVGYIYMLKL+H+V DK++ Sbjct: 1202 PVFNGAKEADIENLLEQAGLNKSGQVTLYDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIH 1261 Query: 1269 ARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRV 1328 ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+V Sbjct: 1262 ARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKV 1321 Query: 1329 YESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAK 1373 YESIV G D FE G PESFNVLVKEM++LGL+++L +++ K Sbjct: 1322 YESIVRGEDNFEAGIPESFNVLVKEMRSLGLNVELVSNKPKPGEL 1366 >gi|300022534|ref|YP_003755145.1| DNA-directed RNA polymerase subunit beta [Hyphomicrobium denitrificans ATCC 51888] gi|299524355|gb|ADJ22824.1| DNA-directed RNA polymerase, beta subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 1383 Score = 1730 bits (4480), Expect = 0.0, Method: Composition-based stats. Identities = 870/1386 (62%), Positives = 1093/1386 (78%), Gaps = 9/1386 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNE-GLQAAF 59 MA+ + R+RK FG E+ ++P+LIEVQKASYD FLM+ P R ++ GLQ+ F Sbjct: 1 MAQTL--TSRKRLRKQFGSIGEVAEMPNLIEVQKASYDDFLMVKEPPGGRSDDFGLQSVF 58 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 K VFPI+ F+G + LEFVSYEF+PPKFD D+C+ RD+TYA PLK+ LRLIVFD++E TG+ Sbjct: 59 KGVFPISDFAGKSTLEFVSYEFEPPKFDTDECMQRDMTYAAPLKVKLRLIVFDINEETGS 118 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 KSIKD+KEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHD+G+ SGKLL Sbjct: 119 KSIKDVKEQDVYMGDMPLMTLNGTFIINGTERVIVSQMHRSPGVFFDHDRGKTHSSGKLL 178 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS 239 +A RIIP +G W+D EFD+KDI++VRIDRRRK+PVT+ L ALG+D E+IL+ FY I Sbjct: 179 FAARIIPYRGSWLDFEFDAKDIVYVRIDRRRKLPVTTMLYALGLDDEQILAHFYKHIPIK 238 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 + W P G S + D TGE + G+K+T+ + L E GVK + I+ Sbjct: 239 ESKRGWKMPYIPEK-FRGITPQSDIADAKTGEVIARQGEKITARRARELAESGVKEILIS 297 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 ++ L G ++AEDIV+ ETG+I+ EAGD +D L E+ ++++ IL +D VN A+IR Sbjct: 298 AEDLAGRFIAEDIVDLETGKIFAEAGDELDANLLAELKEQKVKEFHILDIDYVNVGAFIR 357 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 NTL DKN ++++AL+DIYRVMRPG+ T A ++F+ LFFD +++DLS VGRVKMNMR Sbjct: 358 NTLNIDKNANQQEALMDIYRVMRPGEPPTIEAATALFHGLFFDPERFDLSAVGRVKMNMR 417 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 L LD PD +R +R+EDI+A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYR+GL Sbjct: 418 LELDAPDTMRVLRREDILAVVKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGL 477 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 LRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH R Sbjct: 478 LRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKR 537 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE Sbjct: 538 RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIE 597 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 +PYRKV +G+VTN+VVYLSAMEE ++AQAN+ +D G TE+LV R G+ LVP + Sbjct: 598 SPYRKVINGRVTNEVVYLSAMEEMRHHVAQANAEIDAKGKMTEDLVTIRHNGDVTLVPTD 657 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 K+D+ID SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL+KAEAP VGTGME V Sbjct: 658 KVDYIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLIKAEAPLVGTGMEERV 717 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SGAAI A+R GIV+QVDA RIVIR+ E DPS GVDIYRL KFQRSNQNTC+NQR Sbjct: 718 AHDSGAAIAARRTGIVDQVDATRIVIRATEEQ-DPSKPGVDIYRLRKFQRSNQNTCINQR 776 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 PL+ VGD V DIIADGPST+LG+LALG+N+LVAFMPW GYNFEDS+L++ER+VSEDVF Sbjct: 777 PLINVGDHVHAGDIIADGPSTELGELALGKNVLVAFMPWMGYNFEDSILMNERVVSEDVF 836 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKIT Sbjct: 837 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKIT 896 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GT+V+VR+FNRHG++K+ER++++ Sbjct: 897 PKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGVEKDERAMAI 956 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ERE+IE LA+D+DDE ILDRN+Y+RL + L G+ GPKG +K T + + ++ + PRS Sbjct: 957 EREEIERLAKDRDDELQILDRNVYARLKDALMGKEVAKGPKGARKGTTIDTAILDDIPRS 1016 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 QWW+ + +EK Q VE+++ QYE +K L RF +K++K+Q GD++PPGV+++VKVFVA Sbjct: 1017 QWWEIGLANEKAQAEVEAIQKQYEDAKKGLGLRFADKVDKLQRGDELPPGVMKMVKVFVA 1076 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR IQ GDKMAGRHGNKG+VS I+P EDMPFL+DGTPVD+VLNPLGVPSRMNVGQI ET Sbjct: 1077 VKRKIQPGDKMAGRHGNKGVVSMIVPSEDMPFLEDGTPVDVVLNPLGVPSRMNVGQILET 1136 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 H+GWAC GLG+ I ++ + +G LR + KV G DD ++ +AE Sbjct: 1137 HMGWACRGLGRLIDDALHQFHESGQAKALRDQMAKVYGDEIKP----TMKDDELVGIAEN 1192 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 ++GVP++TPVFDGA E+ I ML++A D SGQ L+DG +GEPFDR VTVGY Y+LKL Sbjct: 1193 LRNGVPIATPVFDGAREKDIVEMLQLAGFDTSGQVTLFDGRSGEPFDRKVTVGYKYVLKL 1252 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1253 HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1312 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 DDV GRT+VYE+IV G+D FE G PESFNVLVKEM+ALGL+++L NS + E P+ Sbjct: 1313 DDVAGRTKVYEAIVRGDDAFEAGVPESFNVLVKEMRALGLNVELVNSEAQPPEVEEAEPE 1372 Query: 1380 FNKCEL 1385 + +L Sbjct: 1373 APQAQL 1378 >gi|167644760|ref|YP_001682423.1| DNA-directed RNA polymerase subunit beta [Caulobacter sp. K31] gi|189043850|sp|B0SUP7|RPOB_CAUSK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|167347190|gb|ABZ69925.1| DNA-directed RNA polymerase, beta subunit [Caulobacter sp. K31] Length = 1360 Score = 1728 bits (4476), Expect = 0.0, Method: Composition-based stats. Identities = 850/1368 (62%), Positives = 1073/1368 (78%), Gaps = 12/1368 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK FG+ PE + +P+LIEVQ++SY+ FL + P R +EG++A FKSV Sbjct: 1 MAQSFTGKKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQREVRPGVRKDEGIEAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LE+VSYEF+ PK+DV++C+ RD+T+A PLK+ LRLIVF+ +E TGA+S+ Sbjct: 61 FPIKDFNERAVLEYVSYEFEEPKYDVEECIQRDMTFAAPLKVKLRLIVFETEEETGARSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR- 241 R+IP +G W+D EFD+KD+++VRIDRRRK+P T+FL ALGMD EEIL+TFY + + +R Sbjct: 181 RVIPYRGSWLDFEFDAKDVVYVRIDRRRKLPATTFLYALGMDGEEILTTFYDVVPFEKRT 240 Query: 242 ---GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + W P G K +L+D D+GE+V +G K+T+ K L + G+K L + Sbjct: 241 AAGAEGWATPYKPE-RWRGVKPEFALIDADSGEEVAAAGTKITARQAKKLADNGLKTLLL 299 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + L G Y+A D VN ETGEIY EAGD +D S+E + I +L +D V AY+ Sbjct: 300 APEALTGRYLARDAVNFETGEIYAEAGDELDVTSIEALAAQGFSTIDVLDIDHVTVGAYM 359 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL DKN R+DAL DIYRVMRPG+ T AE+MF LFFD+++YDLS VGRVKMNM Sbjct: 360 RNTLRVDKNAVREDALFDIYRVMRPGEPPTVEAAEAMFKSLFFDAERYDLSAVGRVKMNM 419 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 RL LD D++R +RKED++A++K+LV LR+G+G IDDIDNLGNRRVRSVGE+L+NQYR+G Sbjct: 420 RLELDASDEMRVLRKEDVLAVLKLLVGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVG 479 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LLRMER+IKER+SSVDID+VMP DLINAKP ++V EFF SSQLSQ + N LS ITH Sbjct: 480 LLRMERAIKERMSSVDIDTVMPHDLINAKPAAASVREFFGSSQLSQFMDQTNPLSEITHK 539 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + ARVN YGFI Sbjct: 540 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFI 599 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E+PYR+V DGK +VVY+SAMEE IAQ+N + +G ++LV R GE L+ + Sbjct: 600 ESPYRRVADGKPLEEVVYMSAMEESKHVIAQSNIKVL-NGEIVDDLVPGRINGEPTLLQK 658 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 E++D +D SP+QVVS+AA+LIPFLENDD+NR LMG NMQRQAVPL++++AP VGTGME+V Sbjct: 659 EQVDLMDVSPRQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVQSDAPLVGTGMEAV 718 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGA ++AKR G+VEQ+D RIV+R+ E D + SGVDIYRL KFQRSNQ+TC+NQ Sbjct: 719 VARDSGAVVIAKRTGVVEQIDGTRIVVRATEE-TDAARSGVDIYRLSKFQRSNQSTCINQ 777 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD++ DIIADGPST+LG+LALGRN LVAFMPW+GYNFEDS+LISER+V +DV Sbjct: 778 RPLVKVGDKISAGDIIADGPSTELGELALGRNALVAFMPWNGYNFEDSILISERIVRDDV 837 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PGDILVGK+ Sbjct: 838 FTSIHIEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKV 897 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GT+VDVR+FNRHG+DK+ER+++ Sbjct: 898 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERALA 957 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ER +I+ L +D+DDE IL+RNI RL E+L G A+SGPKG + ++++ ++E Sbjct: 958 IERAEIDRLGKDRDDEFAILNRNISGRLRELLIGNVALSGPKGLSRGQ-ITAEGLAEVQP 1016 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 WWQ A++DEK +ESL+ ++ ++ L+ RF++K++K+Q GD++PPGV+++VKVFV Sbjct: 1017 GLWWQIALEDEKAMGELESLRRLFDENRKRLDRRFEDKVDKLQRGDELPPGVMKMVKVFV 1076 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR +Q GDKMAGRHGNKG++SRILP EDMPFL DGT VD+VLNPLGVPSRMNVGQIFE Sbjct: 1077 AVKRKLQPGDKMAGRHGNKGVISRILPIEDMPFLADGTHVDVVLNPLGVPSRMNVGQIFE 1136 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC GLGK+I +L+ D++A G L L ++ G + + ++ +A Sbjct: 1137 THLGWACAGLGKQITTLLEDWQAGGQKQALIDRLTEIYGPDEELPETE----EELVELAR 1192 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 GVP++TPVFDGA I LRMA LD SGQSILYDG TGE F RPVTVGYIYMLK Sbjct: 1193 NLGKGVPIATPVFDGARIGDIEDHLRMAGLDPSGQSILYDGQTGEQFKRPVTVGYIYMLK 1252 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1253 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1312 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 SDDV GRT+VYESIV G+DTFE G PESFNVLVKEM++LGL+++LENS Sbjct: 1313 SDDVAGRTKVYESIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENS 1360 >gi|114319612|ref|YP_741295.1| DNA-directed RNA polymerase subunit beta [Alkalilimnicola ehrlichii MLHE-1] gi|122312461|sp|Q0ABI2|RPOB_ALHEH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|114226006|gb|ABI55805.1| DNA-directed RNA polymerase subunit beta [Alkalilimnicola ehrlichii MLHE-1] Length = 1355 Score = 1728 bits (4476), Expect = 0.0, Method: Composition-based stats. Identities = 720/1364 (52%), Positives = 986/1364 (72%), Gaps = 9/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK P I+++P L+ Q SY FL A + R + GL AF+SV Sbjct: 1 MAYSFTEKKRIRKDFGKLPNILEVPYLLATQIDSYRQFLQEERAAESREDVGLHGAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPIT+ SG A LE+VSY P FDV +C R LTYA PL++ +RL+++D D +S+ Sbjct: 61 FPITSHSGTAALEYVSYRIGDPGFDVKECQSRGLTYAAPLRMLVRLVIYDKDG----QSV 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG+LPLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLL++ Sbjct: 117 KDIKEQEVYMGELPLMTRNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD I+VRIDRRRK+P T L ALG D+++IL F+ K + R Sbjct: 177 RVIPYRGSWLDFEFDPKDNIYVRIDRRRKLPATILLRALGFDTQQILDLFFDKNAFHFRD 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + + G + + G+ ++E+G+++T+ ++ L + GV L + ++ Sbjct: 237 DGSVVLDLVPERLRGETAAFDIK--ANGQVLVEAGRRVTARHIRELGKAGVDTLEVPAEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G VA D+V+ TGEI EA + + ++ I + ++ + L+V+ ++ Y+ TL Sbjct: 295 LEGKIVAHDVVDTGTGEIICEANTELTAELVQAIQDAGVKQLDTLFVNDLDRGPYMSQTL 354 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + + +AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N+R+ Sbjct: 355 AIDPTRTQLEALVEIYRMMRPGEPPTKEAAENLFQNLFFSPDRYDLSPVGRMKFNLRVGR 414 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + +DI+A+++ L+++RNG G +DDID+LGNRRVR VGEM +N +R+GL+R+ Sbjct: 415 DEVTGPGVLDNDDILAVLRELINIRNGDGQVDDIDHLGNRRVRCVGEMAENVFRVGLVRV 474 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + + +MPQ+LINAKPV +A+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 475 ERAVRERLSLAESEGLMPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 534 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+ETPY Sbjct: 535 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNRYGFLETPY 594 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT+ V YLSA+EE IAQAN+ + EDG +EL+ R E + +K+ Sbjct: 595 RRVENGVVTDKVDYLSAIEEARYVIAQANARVGEDGRLMDELISIRHGNEFGMATPDKVQ 654 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SPKQ+VS+AASL+PFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 655 YMDVSPKQIVSVAASLVPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVARD 714 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A+R G+VEQVDA RIV+R + + + GVDIY L+K+ RSNQNTC+NQ+PLV Sbjct: 715 SGVIVTAERGGVVEQVDAGRIVVRVNDDETEAGEPGVDIYNLVKYLRSNQNTCMNQKPLV 774 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD V R D +ADGPSTD+G+LALG+NMLVAFMPW+GYNFEDS+LISER+V ED +T+I Sbjct: 775 RPGDVVARGDALADGPSTDMGELALGQNMLVAFMPWNGYNFEDSILISERVVKEDRYTTI 834 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE +ARDTKLG EEIT DIPNVSE L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 835 HIEELTCVARDTKLGTEEITADIPNVSESALNRLDEAGIVHIGAEVKAGDILVGKVTPKG 894 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G+ G V+DV++F R G++K+ R++++E+ Sbjct: 895 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGMDGKVIDVQVFTRDGVEKDSRALAIEQA 954 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ + +D D++ I + + +SRL L GQ A GP G + +++D ++ R +W+ Sbjct: 955 ELAAIRKDLRDQERIFEDDAFSRLERALVGQVAEGGPSGLARGAEVTADYLANLDRKRWF 1014 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++DE+ R +E+++ Q E + LE F+ K KI GDD+ PGV+++VKV++A++R Sbjct: 1015 EIRMRDEEANRQLEAVRAQLEAQRDSLERHFEEKKGKITAGDDLAPGVVKMVKVYLAVRR 1074 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++S I+P EDMPF +DG PVD+VL+PLGVPSRMNVGQ+ ETHLG Sbjct: 1075 RLQPGDKMAGRHGNKGVISMIVPEEDMPFTEDGEPVDVVLSPLGVPSRMNVGQVLETHLG 1134 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLGK+I ++ + + LR+FL++V + DD+ + +A + Sbjct: 1135 WAARGLGKRIGEMLEQH---TKMQELRAFLDQVYNASGQKVDLDSLDDEEIKGLAFNLRE 1191 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E I +ML +A L ESGQ+ LYDG TGE FDRPVT+GY+YMLKLNH+ Sbjct: 1192 GVPMATPVFDGAQEPEIKNMLELAGLPESGQATLYDGRTGEAFDRPVTIGYMYMLKLNHL 1251 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DKV+ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1252 VDDKVHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1311 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVLVKE+++LG++I+LE Sbjct: 1312 AGRTKMYKNIVDGDHRMEAGMPESFNVLVKEIRSLGINIELEQD 1355 >gi|121602831|ref|YP_988881.1| DNA-directed RNA polymerase subunit beta [Bartonella bacilliformis KC583] gi|158513078|sp|A1USC8|RPOB_BARBK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|120615008|gb|ABM45609.1| DNA-directed RNA polymerase, beta subunit [Bartonella bacilliformis KC583] Length = 1383 Score = 1728 bits (4476), Expect = 0.0, Method: Composition-based stats. Identities = 932/1373 (67%), Positives = 1128/1373 (82%), Gaps = 6/1373 (0%) Query: 1 MAKGVV----FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQ 56 MA+ + FNG RVRKFFGK PE+ ++P+LIEVQKASYD FLM+ RP+EGLQ Sbjct: 1 MAQTLAMMSQFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMIKEPKGGRPDEGLQ 60 Query: 57 AAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEF 116 A FKSVFPI+ FSG AMLEFV YEFD PKFDV++C RDLTYA PLK+ LRLIVFD+DE Sbjct: 61 AVFKSVFPISDFSGTAMLEFVRYEFDAPKFDVEECRQRDLTYAAPLKVILRLIVFDIDED 120 Query: 117 TGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSG 176 TG+K IKDIKEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG++ SG Sbjct: 121 TGSKDIKDIKEQGVYMGDMPLMTSNGTFIINGTERVIVSQMHRSPGVFFDHDKGKSHSSG 180 Query: 177 KLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKI 236 K+L+A R+IP +G W+DIEFD+KDI++ RIDRRRK+PVTSFLMALGMD+ +ILSTFY K+ Sbjct: 181 KVLFAARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSFLMALGMDASDILSTFYNKV 240 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFL 296 Y + W P S D G K+ S LVD ++GE V E+GKKLT+ K L EKG+K + Sbjct: 241 TYERVESGWRIPYSV-DRFKGVKLVSDLVDAESGEVVAEAGKKLTARTAKLLVEKGLKAI 299 Query: 297 GITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 ++ D L G Y+A+DIVN ETGEIY+EAGD IDEK L+ +F I IL +D ++ A Sbjct: 300 RVSEDELLGSYLADDIVNYETGEIYLEAGDEIDEKVLKVLFDVGANQINILDIDHMSVGA 359 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 YIRNTL DKN+ R+DAL DIYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKM Sbjct: 360 YIRNTLKVDKNESRQDALFDIYRVMRPGEPPTIDTAEAMFHSLFFDSERYDLSAVGRVKM 419 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N+R+ LD PD VR +R+EDII ++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR Sbjct: 420 NLRMGLDCPDTVRVLRQEDIIGVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYR 479 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS IT Sbjct: 480 VGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEIT 539 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YG Sbjct: 540 HKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG 599 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE+PYRK+ DGKVT +VVYLSAMEE Y+AQANSSLD +G FTEE V CR AGE ++V Sbjct: 600 FIESPYRKITDGKVTTEVVYLSAMEEAKHYVAQANSSLDSEGRFTEEFVVCRHAGEVLMV 659 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 PR+ ID +D SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPL+++EAPFVGTGME Sbjct: 660 PRDHIDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLIRSEAPFVGTGME 719 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++VA+ SGAAI AKR GIV+QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+ Sbjct: 720 AIVARDSGAAISAKRGGIVDQVDATRIVIRATED-LDPSKSGVDIYRLQKFQRSNQSTCI 778 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRPLV VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SER+V++ Sbjct: 779 NQRPLVHVGDRIEKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVAD 838 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEEFEV ARD KLGPEEITRDIPNV+EE L+N+DE GI+ +GAEV PGDILVG Sbjct: 839 DVFTSIHIEEFEVAARDMKLGPEEITRDIPNVAEEALRNLDEAGIVYIGAEVQPGDILVG 898 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 KITPKGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER+ Sbjct: 899 KITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERA 958 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEY 1016 + +ERE+IE LA+D+DDEQ ILDRN+Y+RL +L ++A+ GPKGF+K + S +++ Y Sbjct: 959 MEIEREEIERLAKDRDDEQSILDRNVYARLAGMLKDKSAIRGPKGFEKGQKIDSTVLNNY 1018 Query: 1017 PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 PRSQWWQFAV DEKVQ +E+L QY+ SK L+ RF +K+EK+Q GD+MPPGV+++VKV Sbjct: 1019 PRSQWWQFAVDDEKVQNKIEALCNQYDESKEALQRRFMDKVEKVQRGDEMPPGVMKMVKV 1078 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 FVA+KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI Sbjct: 1079 FVAVKRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQI 1138 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 ETHLGWAC G+GKKI L++ Y+ GDI PLR +E +I E + YDD+S++++ Sbjct: 1139 LETHLGWACAGMGKKIGDLVDFYQETGDILPLRQRIENLIPDNDRNEPVRQYDDESLVKL 1198 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A Q + GV ++TPVFDGA E IN+ML A LD SGQ LYDG TGEPFDR VTVGYIYM Sbjct: 1199 AHQMRKGVSIATPVFDGAHEADINAMLEDAGLDSSGQVTLYDGRTGEPFDRQVTVGYIYM 1258 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1259 LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1318 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 +KSDDV GRT+VYE+IV G+DTFE PESFNVL+KEM++LGL++ L ++R Sbjct: 1319 VKSDDVAGRTKVYEAIVRGDDTFEASIPESFNVLIKEMRSLGLNVKLGDAREF 1371 >gi|220935499|ref|YP_002514398.1| DNA-directed RNA polymerase, beta subunit [Thioalkalivibrio sp. HL-EbGR7] gi|254765315|sp|B8GV65|RPOB_THISH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|219996809|gb|ACL73411.1| DNA-directed RNA polymerase, beta subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 1358 Score = 1728 bits (4475), Expect = 0.0, Method: Composition-based stats. Identities = 742/1364 (54%), Positives = 999/1364 (73%), Gaps = 6/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+I+D+P L+ Q SY FL + + D R + GL AAFK+V Sbjct: 1 MAYSYTEKKRIRKDFGKRPQILDVPYLLTTQLDSYRQFLQADRSEDNRQDVGLHAAFKTV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG LE+VSY P FDV +C R +TYA PL++ LRL+++D D G++ + Sbjct: 61 FPIVSYSGTVELEYVSYRLGKPVFDVKECQLRGMTYAAPLRVLLRLVIYDKDAPAGSRVV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG+LPLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 KDIKEQEVYMGELPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFNA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L ALGM++EEIL+TF+ S Sbjct: 181 RVIPYRGSWLDFEFDPKDSVFVRIDRRRKLPATVLLRALGMETEEILATFFETNTVSITK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + L L G + + ++ESG+++T+ ++ L+ G+K L + ++ Sbjct: 241 DGFDMELIPERL-RGEVAAFDFKVK--NKVLVESGRRITARHVRELEAAGIKSLEVPAEY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A +++ ++GE+ A D I ++ L+++ + I+ LY + +++ YI TL Sbjct: 298 LVGKVLAHAVIDEDSGELVANANDEITDELLKKLRAAGIKSFKTLYTNDLDHGPYISTTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + + +A ++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 358 NIDTCRSQLEAQVEIYRMMRPGEPPTKEAAENLFNNLFFTEERYDLSAVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + K+DI+A++K L+D+RNG G +DDID+LGNRRVRSVGEM +N +R+GL+R+ Sbjct: 418 EEITGPGVLDKDDILAVLKTLIDIRNGNGQVDDIDHLGNRRVRSVGEMAENVFRVGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQ+LINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 478 ERAVKERLSVAESEGLMPQELINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +GKVTN++VYLSA+EE IAQAN+SLD G+ +ELV CR A E + +KI+ Sbjct: 598 RKVENGKVTNEIVYLSAIEEGQYVIAQANASLDAKGNLVDELVSCRHANEFTMSTPDKIE 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SPKQ+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+AE VGTG+E VA Sbjct: 658 FMDISPKQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPCLRAETAVVGTGIERTVAID 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG++IVA+R G+V+ VDA RIV+R + + + GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 718 SGSSIVARRGGVVDSVDAARIVVRVNDDETEAGEPGVDIYNLTKYTRSNQNTCINQRPLV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD + R D++ADG STDLG++ALG+NM+VAFMPW+GYNFEDS+LISER+V ED FTSI Sbjct: 778 NVGDVLARGDVLADGSSTDLGEMALGQNMMVAFMPWNGYNFEDSILISERVVQEDRFTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE +ARDTKLGPEEI+ DIPNVSE L +DE GI+ VGAEV P DILVGK+TPKG Sbjct: 838 HIEELTCVARDTKLGPEEISADIPNVSESLLSKLDESGIVYVGAEVKPNDILVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DVR+F R G+DK++R++ +E Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMEGTVIDVRVFTRDGVDKDKRALQIEEA 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 + + +D D+ I + +IY R+ ++L G+ A GP K T ++ ++E PR +W+ Sbjct: 958 ALAAVRKDLKDQLRIYEDDIYDRVEKLLVGKLAAGGPNKLKDGTKVTKTYLTEVPREKWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++ E+V +E + + E RFK + EK+ GDD+ PGVL++VKV++A+KR Sbjct: 1018 EVRMRTEEVNEQLEKMAASLKEQHEAFETRFKEQKEKLTQGDDLAPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS I+P EDMP+L+DGTPVDIVLNPLGVPSRMNVGQ+ ETHLG Sbjct: 1078 RMQPGDKMAGRHGNKGVVSMIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNVGQVLETHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG+KI ++ +A I LR FL+K+ + +SD+ D+ +L++ K Sbjct: 1138 WAAKGLGQKIGRMV---EAKAKIDELRKFLDKIYNHSAKKVDLSDFSDEEILKLCANLKK 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA+EE I +ML++ADL ESGQ+ L+DG TGE FDRPVTVGY++MLKLNH+ Sbjct: 1195 GVPMATPVFDGAEEEEIKAMLKLADLPESGQTTLFDGRTGESFDRPVTVGYMHMLKLNHL 1254 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1255 VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GR ++Y++IV G+ E PESFNVL+KE+++L ++I+LE Sbjct: 1315 QGRNKMYKNIVDGDHRMEANIPESFNVLMKEIRSLAINIELEQD 1358 >gi|83594027|ref|YP_427779.1| DNA-directed RNA polymerase subunit beta [Rhodospirillum rubrum ATCC 11170] gi|109914389|sp|Q2RQV3|RPOB_RHORT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|83576941|gb|ABC23492.1| DNA-directed RNA polymerase, beta subunit [Rhodospirillum rubrum ATCC 11170] Length = 1393 Score = 1726 bits (4471), Expect = 0.0, Method: Composition-based stats. Identities = 849/1390 (61%), Positives = 1065/1390 (76%), Gaps = 31/1390 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 R+RK FG+ P + +P+LIEVQK+SYD FL + + D+R + GLQ FKSV Sbjct: 1 MTKSLTSRKRIRKDFGRIPTVAPMPNLIEVQKSSYDQFLQIGVPVDKRTDSGLQEVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI FSG LEFV+YE + PK+D D+C R +T+A PLK+TLRL+V+DVDE TGA+SI Sbjct: 61 FPIRDFSGKGELEFVAYELEEPKYDTDECQQRGMTFAAPLKVTLRLLVWDVDEETGARSI 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DIKEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 121 RDIKEQDVYMGDMPLMTSNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL--------------------- 221 R+IP +G W+D EFD+KD+++VRIDRRRK+PVT+ L AL Sbjct: 181 RVIPYRGSWLDFEFDAKDMVYVRIDRRRKLPVTTLLYALEGAAATALREARTAEGRSVDP 240 Query: 222 ----GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESG 277 GM SEEIL FY K+ Y + W D + G K+ LVD TGE IE+G Sbjct: 241 SEIAGMTSEEILDFFYQKLSYKRDDKGWKVDFKP-DHLRGVKLMFDLVDAATGEVKIEAG 299 Query: 278 KKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIF 337 K+T + L E G+ + + ++ L G Y AED++N +GEIY EAG+ + E L ++ Sbjct: 300 TKVTPRAARKLAEDGMTEMRVFTEELVGRYAAEDMINEASGEIYAEAGEELTEAMLADME 359 Query: 338 HSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFN 397 + ++ +L++D VN Y+RNTL DKN R++AL+DIYRVMRPG+ T A+++F Sbjct: 360 KAGFTELRVLHIDHVNVGPYVRNTLAMDKNTTREEALIDIYRVMRPGEPPTLETADALFK 419 Query: 398 FLFFDSDKYDLSTVGRVKMNMRL---NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTID 454 LFFDS++YDLS VGRVKMN RL + PD +R +RKED++ II+ LV+L++GKG ID Sbjct: 420 GLFFDSERYDLSAVGRVKMNARLGFTMQEAPDTMRVLRKEDVLHIIRQLVELKDGKGEID 479 Query: 455 DIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVC 514 DID+LGNRRVRSVGE+++NQYR+GLLRMER+I+ER+SSVDID+VMP DLINAKP +AV Sbjct: 480 DIDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDTVMPHDLINAKPAAAAVR 539 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 EFF SSQLSQ + N LS ITH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET Sbjct: 540 EFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIET 599 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSL 634 EG NIGL++SL +FARVN YGFIE+PYRKV +G VT++V Y+SAMEE IAQAN++L Sbjct: 600 PEGPNIGLINSLATFARVNQYGFIESPYRKVVEGTVTDEVTYMSAMEEGKYVIAQANAAL 659 Query: 635 DEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 EDG F ++L+ CR A + +V + ID+ID SPKQ+VS+AA+LIPFLENDD+NR LMG Sbjct: 660 TEDGHFADDLISCRKASDFEMVQPQDIDYIDVSPKQLVSVAAALIPFLENDDANRALMGS 719 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDP 754 NMQRQAVPL+KAEAP+VGTGME+ VA+ SGA I AKRAG+V+QVDA RIVIR+ E L Sbjct: 720 NMQRQAVPLVKAEAPYVGTGMEAAVARDSGATIAAKRAGVVQQVDATRIVIRATED-LKI 778 Query: 755 STSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVA 814 + SGVDIYRL KFQRSNQ+TC+NQRPLVKVGD V R +I+ADGP T++G+LALGRN+LVA Sbjct: 779 AESGVDIYRLQKFQRSNQSTCINQRPLVKVGDLVGRGEILADGPLTEMGELALGRNVLVA 838 Query: 815 FMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLK 874 FMPW+GYNFEDS+LISER+VS+DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE LK Sbjct: 839 FMPWNGYNFEDSILISERIVSDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALK 898 Query: 875 NIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSG 934 N+DE GI+ +GAEV GDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G Sbjct: 899 NLDEAGIVYIGAEVQAGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRIPPG 958 Query: 935 VSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 V+GTVV+VR+FNR G++K+ER++++ER++IE LA+D+DDE+ IL+ + RL E+L GQ Sbjct: 959 VTGTVVEVRVFNRRGVEKDERALAIERQEIESLAKDRDDERAILEGSFARRLKELLIGQK 1018 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 V GP+G V+S DL+S Y +QW Q AV++++ +E LK YE S + +++RF+ Sbjct: 1019 VVGGPRGMATGGVISEDLLSGYTAAQWRQIAVENDETATEIEGLKKAYEESIAKIQERFE 1078 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 NK+EK+Q GD++PPGVL++VKVFVA+KR +Q GDKMAGRHGNKG++S+I P EDMP+L+D Sbjct: 1079 NKVEKLQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLED 1138 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKAN-GDISPLRSFLE 1173 GT VDIVLNPLGVPSRMNVGQI ETHLGWAC GLG +I +L+ K I+ LR L+ Sbjct: 1139 GTYVDIVLNPLGVPSRMNVGQILETHLGWACRGLGAQIGALLEQVKRGLIPINDLREKLD 1198 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 V G E ++ DD + +A +SGVP++TPVFDGA E I MLR A LD SGQ Sbjct: 1199 DVYGPRHAKEDLAPMGDDQIKELAFNLRSGVPIATPVFDGARESDIVDMLRKAGLDSSGQ 1258 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 L DG TGEPFDR VTVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1259 VTLSDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQR 1318 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKE Sbjct: 1319 FGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVKGDDTFEAGIPESFNVLVKE 1378 Query: 1354 MQALGLSIDL 1363 M++LGL ++L Sbjct: 1379 MRSLGLDVEL 1388 >gi|329890196|ref|ZP_08268539.1| DNA-directed RNA polymerase, beta subunit [Brevundimonas diminuta ATCC 11568] gi|328845497|gb|EGF95061.1| DNA-directed RNA polymerase, beta subunit [Brevundimonas diminuta ATCC 11568] Length = 1371 Score = 1726 bits (4471), Expect = 0.0, Method: Composition-based stats. Identities = 848/1367 (62%), Positives = 1075/1367 (78%), Gaps = 9/1367 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A F G R+R FG+ PE + +P+LIEVQ+ASY+ FL P R +EG++A FK Sbjct: 13 IAAATSFTGKKRIRYSFGRIPEAVQMPNLIEVQRASYEQFLQRESRPGLRNDEGIEAVFK 72 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI F+ A+LE+VSYEF+ PK+DV++C+ RD+TYA PLK+ LRLIVF+ +E TGA+ Sbjct: 73 SVFPIKDFNERAVLEYVSYEFEDPKYDVEECIQRDMTYAAPLKVKLRLIVFETEEETGAR 132 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 133 SVKDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 192 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+D EFD+KDI++VRIDRRRK+P ++FL ALGMD EEIL TFY + Y + Sbjct: 193 AARVIPYRGSWLDFEFDAKDIVYVRIDRRRKLPASTFLYALGMDGEEILKTFYETVPYEK 252 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RG+ W P G K LVD DTGE V +G+K+++ K L + G+K L + + Sbjct: 253 RGEGWVTPYKPE-RWRGVKPEFDLVDADTGEVVAPAGQKISARAAKKLADGGLKSLSLAA 311 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L Y+A D VN +TGEIY EAGD +D ++E + + I +L +D V AY+RN Sbjct: 312 DALLTKYLAADAVNYQTGEIYAEAGDELDAAAIELLEANGFTTIDVLDIDHVTVGAYMRN 371 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL D+YRVMRPG+ T AE+MFN LFFD+++YDLS VGRVKMNMRL Sbjct: 372 TLRVDKNTGREDALFDVYRVMRPGEPPTPEAAEAMFNSLFFDAERYDLSAVGRVKMNMRL 431 Query: 421 N-LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 + D++R ++K+D++ +++ILV L++G+G IDDIDNLGNRRVRSVGE+L+NQYR+GL Sbjct: 432 ETPEVSDEIRVLQKDDVLKVLQILVGLKDGRGEIDDIDNLGNRRVRSVGELLENQYRVGL 491 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 LRMER+IKER+SSVDID+VMP DLINAKP +AV EFF SSQLSQ + N LS ITH R Sbjct: 492 LRMERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKR 551 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + ARVN YGFIE Sbjct: 552 RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIE 611 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 +PYR+V +GK T++VVY+SAMEE IAQAN L +DG EELV R G+ L+ +E Sbjct: 612 SPYRRVVEGKATDEVVYISAMEEAKHVIAQANIDL-KDGEIVEELVPGRINGDSQLLTKE 670 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 +D +D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPL++++AP VGTGME+VV Sbjct: 671 TVDMMDVSPKQVVSVAAALIPFLENDDANRALMGANMQRQAVPLVQSDAPLVGTGMEAVV 730 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SGA ++A+R G+VEQ+D RIV+R+ GD+D SGVDIYRL KFQRSNQ+TC+NQR Sbjct: 731 AVDSGAVVIARRDGVVEQIDGTRIVVRAT-GDVDAGRSGVDIYRLSKFQRSNQSTCINQR 789 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P+V+VGDEV+ D+IADGPSTDLG+LALGRN+LVA+MPW+GYNFEDS+LISER+V +D+F Sbjct: 790 PIVRVGDEVKAGDVIADGPSTDLGELALGRNVLVAYMPWNGYNFEDSILISERIVRDDIF 849 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIH+EEFEVMARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PGDILVGK+T Sbjct: 850 TSIHLEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVT 909 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GT+VDVR+FNRHGIDK+ER++++ Sbjct: 910 PKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIDKDERAVAI 969 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ER +IE L +D+DDE IL+RN+Y R+ +L G+ AVSGPKG + V + + ++E + Sbjct: 970 ERAEIERLGKDRDDELKILERNVYGRVKPLLLGKTAVSGPKGMGRGEV-TEEKLAEVSKG 1028 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 WWQ A+ DEK +E++K Q+E ++ L+ RF++K+EK+Q GD+MPPGV+++VKVFVA Sbjct: 1029 LWWQVALDDEKAMGELEAMKKQFEDARKALDRRFEDKVEKLQRGDEMPPGVMKMVKVFVA 1088 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR +Q GDKMAGRHGNKG++S+ILP EDMP L DGT VDIVLNPLGVPSRMN+GQIFET Sbjct: 1089 VKRKLQPGDKMAGRHGNKGVISKILPIEDMPHLDDGTHVDIVLNPLGVPSRMNIGQIFET 1148 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 HLGWA GLGK+IK L+ + G L S L ++ G + + D+ ++ +A+ Sbjct: 1149 HLGWAAAGLGKQIKGLLEQWMDGGMRDALVSRLTQIYGADTPLPQ----SDEELIELAQN 1204 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 GVP +TPVFDGA I +L ADLD SGQSIL+DG TGE F RPVTVGY+YMLKL Sbjct: 1205 LSKGVPFATPVFDGARISDIEDLLESADLDRSGQSILFDGQTGEQFKRPVTVGYVYMLKL 1264 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1265 HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1324 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT+VYE+IV G+D+FE G PESFNVLVKEM++LGL+++LENS Sbjct: 1325 DDVAGRTKVYEAIVRGDDSFEAGIPESFNVLVKEMRSLGLNVELENS 1371 >gi|83858573|ref|ZP_00952095.1| DNA-directed RNA polymerase beta subunit [Oceanicaulis alexandrii HTCC2633] gi|83853396|gb|EAP91248.1| DNA-directed RNA polymerase beta subunit [Oceanicaulis alexandrii HTCC2633] Length = 1359 Score = 1726 bits (4469), Expect = 0.0, Method: Composition-based stats. Identities = 858/1365 (62%), Positives = 1079/1365 (79%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G+ F G R+RK FG+ P +++P+LIEVQK SY+ FLM + A +RP+EGLQA FKSV Sbjct: 1 MGLSFTGKKRIRKSFGRIPGAVEMPNLIEVQKHSYEQFLMKDTAIADRPDEGLQAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ FS A+LEFVSYEF+PPK+DV++C+ RD+TYA PLK+ +RLIVFDVDE TG+KS+ Sbjct: 61 FPVKDFSERALLEFVSYEFEPPKYDVEECVQRDMTYAAPLKVKMRLIVFDVDEETGSKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT GTF++ G +R++VSQ+HRSPG+ FDHD+G+ SGK L+A Sbjct: 121 KDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDRGKTHASGKYLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+HVRIDRRRK+P T+ L ALG+D EEILSTFY ++ Y Sbjct: 181 RIIPYRGSWLDFEFDAKDILHVRIDRRRKLPATTLLYALGLDKEEILSTFYGRVTYEAGK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D W P + G K L+D +GE V +GKK+++ + E G++ L ++S+ Sbjct: 241 DGWTMPFV-KERWRGIKPQRDLIDAKSGEVVAAAGKKISARAANKMAEDGLEKLLVSSEE 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G + AED+VN ETGEI+ EAGD + E+ + I + + + +L +D ++ ++R TL Sbjct: 300 LMGKFAAEDLVNAETGEIFAEAGDELTEEVINAINEAGVDSLDVLDIDGLSIGGHMRTTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN R+ AL+DIYRVMRPG+ T AE++F LFFD ++YDLS VGRVKMNMRL+L Sbjct: 360 AADKNDTREQALIDIYRVMRPGEPPTPETAEALFAGLFFDPERYDLSPVGRVKMNMRLDL 419 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + PDDVR +R+EDII ++++L+DLR+GKG IDDIDNLGNRRVRSVGE+++NQYR+GLLRM Sbjct: 420 ECPDDVRVLRQEDIIEVLRVLLDLRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLRM 479 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+ SVDI++VMP DL+NAKP +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 480 ERAIKERMGSVDIETVMPHDLVNAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRMS 539 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL+++ARVN YGFIE+PY Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYARVNKYGFIESPY 599 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG--EEILVPREK 660 RKV +GK+T+ V YLSAM+E IAQAN+ +DE+G E V CR + LVPRE Sbjct: 600 RKVENGKLTDQVDYLSAMQESRYSIAQANAGVDENGMLANEFVNCRVGPGRDATLVPRED 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D+ID SPKQVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+KAEAP VGTGME+VVA Sbjct: 660 VDYIDVSPKQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPLVGTGMEAVVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAA+ A+R G+VEQVDA RIV+R+ G++ + SGVDIYRL KFQRSNQ+T +NQRP Sbjct: 720 RDSGAAVAARRDGVVEQVDAQRIVVRAT-GEIGAAESGVDIYRLSKFQRSNQSTAINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V+VGD VR DIIADGPSTDLGDLALGRN+LVAFMPW+GYNFEDS+LISER+V +DVFT Sbjct: 779 IVRVGDNVRAGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILISERIVRDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 S+H+EEFEVMARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV GDILVGK+TP Sbjct: 839 SVHLEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVEAGDILVGKVTP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G +GT+V+VR+FNRHG+DK+ER+I++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGTTGTIVEVRVFNRHGVDKDERAIAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE L D+DDE IL+R+IY RL EIL G++AVSGPKGFKK V +++ + E P SQ Sbjct: 959 REEIERLGEDRDDELAILERDIYGRLREILIGKSAVSGPKGFKKGEV-TAEALEEVPASQ 1017 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW+ ++DE VE+LK QY+ SK+ L+ RF++K+EK+Q GD+MPPGV+++VKVFVA+ Sbjct: 1018 WWKIGLEDEAAMAGVEALKKQYDESKARLDRRFEDKVEKLQRGDEMPPGVMKMVKVFVAV 1077 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG++S+I P EDMPFL+DGT VDIVLNPLGVPSRMNVGQI ETH Sbjct: 1078 KRKLQPGDKMAGRHGNKGVISKINPIEDMPFLEDGTSVDIVLNPLGVPSRMNVGQILETH 1137 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC GLG++I YK NGD L L K G + ++ + Sbjct: 1138 LGWACKGLGRQIGEAYEAYKRNGDQGDLNKMLIKAYGDDQELPE----TEEERAELGRNL 1193 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 +GVP++TPVFDGA E+ I L+ A D+SGQS+LYDG TG+ F RPVTVG Y+LKL+ Sbjct: 1194 ANGVPIATPVFDGAREDDIVDHLQRAGFDKSGQSVLYDGRTGDQFKRPVTVGIKYLLKLH 1253 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEMLT+KSD Sbjct: 1254 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSD 1313 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV GRT+VYE+IV G++ FE G PESFNVLVKEM++LGL+++L N Sbjct: 1314 DVAGRTKVYEAIVRGDNAFEAGIPESFNVLVKEMRSLGLNVELVN 1358 >gi|312115365|ref|YP_004012961.1| DNA-directed RNA polymerase subunit beta [Rhodomicrobium vannielii ATCC 17100] gi|311220494|gb|ADP71862.1| DNA-directed RNA polymerase, beta subunit [Rhodomicrobium vannielii ATCC 17100] Length = 1388 Score = 1725 bits (4468), Expect = 0.0, Method: Composition-based stats. Identities = 871/1373 (63%), Positives = 1082/1373 (78%), Gaps = 6/1373 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK FG + ++P+LIEVQK SYD FLM+ R N GLQA F S+ Sbjct: 1 MAQTFIGRKRIRKRFGNIADAAEMPNLIEVQKQSYDQFLMVQDPVGGRANTGLQAVFASI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI FS A LEFV Y+F+PPK+DVD+C R +T+A PLK+ LRLI FDV+E TG++S+ Sbjct: 61 FPIKDFSDKAQLEFVRYDFEPPKYDVDECQQRSMTFAAPLKVKLRLITFDVNEETGSRSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DIKEQ +YMGD+P MT +GTFVI G +R++VSQ+HRSPG+ F HD G++ SGKLL+A Sbjct: 121 RDIKEQDVYMGDIPFMTSNGTFVINGTERVIVSQMHRSPGVFFHHDGGKSHSSGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI++ RIDR+RK+P T+ L ALGM++EEIL TFY +I + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVYARIDRKRKLPATTLLYALGMNNEEILETFYNRISFEATK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W M G K + + D DTGE VIE+GKKL + L++ L E VKF+ + + Sbjct: 241 QGWRTAFVPE-RMRGLKATQDIYDADTGEVVIEAGKKLNARLVRQLAE-RVKFIAVPDEA 298 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G Y+AEDIVN TG IY EAGD +D K L+++ + ++P+L +D VN ++IRNTL Sbjct: 299 LFGRYLAEDIVNMTTGVIYAEAGDELDTKMLDKLRDVGVEELPVLDIDHVNTGSFIRNTL 358 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN+++++AL DIYRVMRPG+ T A ++F LFFD ++YDLS+VGRVKMN+RL++ Sbjct: 359 HLDKNQNQQEALFDIYRVMRPGEPPTEDAARALFKSLFFDEERYDLSSVGRVKMNIRLDI 418 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D++R + K+DII++I+ LVDLR+G+G +DDIDNLGNRRVRSVGE+++NQYRLGLLRM Sbjct: 419 KQSDEMRILTKDDIISVIRTLVDLRDGRGEVDDIDNLGNRRVRSVGELMENQYRLGLLRM 478 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+I+ER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRLS Sbjct: 479 ERAIRERMSSVDIDTVMPQDLINAKPASAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS 538 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PY Sbjct: 539 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPY 598 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT++V+YLSAMEE +IAQAN L++D SF E+L+ CR G+ LV +EK D Sbjct: 599 RKVVDGKVTDEVIYLSAMEEARCHIAQANVKLNDDNSFAEDLIICRHQGDVSLVAKEKAD 658 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 FID SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAP VGTGMESVVA+ Sbjct: 659 FIDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLIRAEAPLVGTGMESVVARD 718 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGAAI AKR+G+++QVDA RIVIR+ + DPS SGVDIY L KFQRSNQNTC+NQRPLV Sbjct: 719 SGAAIGAKRSGVIDQVDATRIVIRATDEM-DPSKSGVDIYNLRKFQRSNQNTCINQRPLV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +VGD V + DIIADGPST+LGDLALG+N+L+AFMPW GYNFEDS+L+SER+VS DVFTSI Sbjct: 778 RVGDRVEQGDIIADGPSTELGDLALGKNVLLAFMPWQGYNFEDSILLSERIVSTDVFTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV PGDILVGKITPKG Sbjct: 838 HIEEFEVSARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GTVV+VR+FNRHG++K+ER++++ERE Sbjct: 898 ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGVEKDERAMAIERE 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE LA+D+DDE ILDRN+Y RL +IL G+ GPKG +K T + +L+SE PRSQWW Sbjct: 958 EIERLAKDRDDELHILDRNVYGRLRDILIGKEVARGPKGLRKGTEANEELLSEVPRSQWW 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 A++DE+ +E+++ QY+ +K LE RF +KI+K++ GD++PPGV+++VKVFVA+KR Sbjct: 1018 DIALKDEQAMSGIEAIRRQYDEAKKRLEQRFVDKIDKLKRGDELPPGVMKMVKVFVAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT VDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1078 KIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG I + Y+ I LR +E + ++ DD ++ +AE Sbjct: 1138 WASRGLGNMINKGLAVYREQHRIDELRQAVEISYKGD---PSVPNFTDDQLVELAENLGK 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVPV+TPVFDGA E IN+ML A LD SGQ LYDG +GEPFDR VTVGY Y+LKL+H+ Sbjct: 1195 GVPVATPVFDGAREADINAMLTAAGLDTSGQVTLYDGRSGEPFDRKVTVGYKYLLKLHHL 1254 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1255 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 GRT+VYE+IV G+DTFE G PESFNVLVKEM+ALG++++L+ +R N E Sbjct: 1315 AGRTKVYEAIVRGDDTFEAGVPESFNVLVKEMRALGMNVELKQTRGANEPAPE 1367 >gi|118591193|ref|ZP_01548592.1| DNA-directed RNA polymerase subunit beta [Stappia aggregata IAM 12614] gi|118436269|gb|EAV42911.1| DNA-directed RNA polymerase subunit beta [Stappia aggregata IAM 12614] Length = 1379 Score = 1724 bits (4465), Expect = 0.0, Method: Composition-based stats. Identities = 909/1378 (65%), Positives = 1129/1378 (81%), Gaps = 4/1378 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMN-IAPDERPNEGLQAAFKS 61 FNG +VRK+FG ++ +P+LIEVQKASYD FL ++ + R NEGL+A F+S Sbjct: 1 MTQTFNGRKKVRKYFGSIRDVAAMPNLIEVQKASYDQFLQVDEMPGGGRKNEGLEAVFQS 60 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI+ F+G ++LEFVSYEF+ PK+DVD+C RD+T+A PLK+TLRLIVFDVDE TGAKS Sbjct: 61 VFPISDFAGTSLLEFVSYEFEAPKYDVDECRQRDMTFAAPLKVTLRLIVFDVDEDTGAKS 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +KDIKEQ +YMGD+P MT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 VKDIKEQDVYMGDMPFMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 R+IP +G W+DIEFD+KDI+H RIDRRRK+PVTS LMALG+D EEIL+TFY +I Y+++ Sbjct: 181 ARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGLDGEEILNTFYKRIDYTRQ 240 Query: 242 GDF-WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 D W P A L G K S L+D D+GE VIE G+K+T +K L+EKGV L +T Sbjct: 241 KDGSWRMPFDGARL-KGTKASYDLIDADSGEVVIEGGRKITQRTIKQLEEKGVTALKVTD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AEDIV+ ++GEIY EAGD I K LEE+ D+ +L +D VN YIRN Sbjct: 300 EDLHGQYLAEDIVDMKSGEIYAEAGDEISGKLLEELVDRGYHDLTMLDIDHVNTGPYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R+DAL DIYRVMRPG+ T AE+MF LFFD ++YDLS VGRVKMNMRL Sbjct: 360 TLSVDKNESREDALFDIYRVMRPGEPPTIDTAEAMFQSLFFDEERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +++ D VR +RK+DI+ +I++L++LR+GKG IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DVECADTVRTLRKDDILEVIRVLLELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RR Sbjct: 480 RMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DG VTN+VVYLSAMEE Y+AQ+N+ D++G FTEEL+ CR AGE ++VP +K Sbjct: 600 PYRKVKDGTVTNEVVYLSAMEEAKHYVAQSNAVYDDEGRFTEELITCRHAGENMMVPSDK 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI A+RAGIV+QVDA RIVIR+ E LDP SGVDIYRL KFQRSNQNTC+NQRP Sbjct: 720 RDSGAAIGARRAGIVDQVDATRIVIRATED-LDPGKSGVDIYRLQKFQRSNQNTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYNFEDS+L+SER+VS+DVFT Sbjct: 779 LVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLSERIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIH+EEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAE+NPGDILVGKITP Sbjct: 839 SIHLEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAELNPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GVSGTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL E+L + A++GPKGFKK TVL+ D+++++PRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLAEMLMDKTAIAGPKGFKKDTVLTGDVLNDFPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFA +DEK +E+L+ QY+ S+ LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1019 WWQFATEDEKFMSEIEALRGQYDDSRKRLEQRFIDKVEKLQRGDELPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I PCEDMPFL+DGT VDIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKLQPGDKMAGRHGNKGVVSKINPCEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWAC G+G +I + ++Y+ +G+I LR + ++ G + + +YDD+ ++R+AEQ Sbjct: 1139 LGWACRGMGNRIGEMYDEYRKSGEIEQLRGKIVEIYGDNMKGDNVKEYDDEGIVRLAEQL 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E + L +A D SGQS+LYDG TGE FDR VTVGYIYMLKL+ Sbjct: 1199 KKGVSIATPVFDGAREPDVVEALNIAGYDPSGQSVLYDGRTGEEFDRKVTVGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+ + + E Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELQRTDVPVIGEEETAD 1376 >gi|260432421|ref|ZP_05786392.1| DNA-directed RNA polymerase, beta subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260416249|gb|EEX09508.1| DNA-directed RNA polymerase, beta subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 1382 Score = 1724 bits (4464), Expect = 0.0, Method: Composition-based stats. Identities = 845/1379 (61%), Positives = 1074/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL A EG+Q F+SV Sbjct: 5 MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDADQPTDGEGIQGVFQSV 64 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV YE + PK+DV++C+ RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 65 FPIKDFNETSVLEFVKYELEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 124 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 125 KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 184 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + Y Sbjct: 185 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYDTVSYKLDK 244 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + L+D TGE + E+GKK+T +K L ++G V L + D Sbjct: 245 KKGWITPFFPERVRGTRPTYDLIDAKTGEVIAEAGKKVTPRAVKQLIDEGKVTELLVPFD 304 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA+DI+N ETG IY+EAGD + + +++E+ + I DIP+L +D+ Sbjct: 305 HIVGKFVAKDIINEETGAIYVEAGDELTLEYDKDGELIGGTVKELIDAGITDIPVLDIDN 364 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 +N YIRNT+ DKN +R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 365 INVGPYIRNTMAQDKNMNRETALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV 424 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD PD R + +EDI+A IK LV+LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 425 GRVKMNMRLALDKPDTQRTLDREDIVACIKALVELRDGKGDIDDIDHLGNRRVRSVGELM 484 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 485 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 544 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 545 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 604 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V DG+VT++V Y+SA EE +AQAN++LDE+G F +LV R AG Sbjct: 605 VNKYGFIETPYRVVKDGQVTDEVHYMSATEEMRHTVAQANATLDENGKFINDLVSTRQAG 664 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L PRE +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 665 DYTLAPRENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 724 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VA SGAAI AKRAGI++QVDA RIVIR+ E L+ +GVDIYRL KFQRSN Sbjct: 725 GTGIEEKVAIDSGAAIQAKRAGIIDQVDAQRIVIRATED-LELGDAGVDIYRLRKFQRSN 783 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVGD V++ ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 784 QNTCINQRPLVKVGDTVQKGEVIADGPSTDMGELALGKNVIVAFMPWNGYNYEDSILISE 843 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTS+HIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 844 RIARDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 903 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 904 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 963 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ AV GPKG K + ++ + Sbjct: 964 KDERALQIEREEVERLARDRDDELAILDRNIYARLKSMILGKTAVKGPKGVKAGSEITEE 1023 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ R QWWQ A++DEK + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1024 LLDSLTRGQWWQLALEDEKDAQIVEALNEQYEVQKRALDARFEDKVEKVRRGDDLPPGVM 1083 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1084 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1143 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG KI + +Y+ +GD++P+R ++ G + E IS+ D++ Sbjct: 1144 NVGQILETHMGWAARGLGLKIDEALQEYRRSGDLTPVREAMKHAYGEDVYAEGISNMDEN 1203 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 ++ A GVP++TPVFDGA E +N L A D SGQSIL+DG TGE F RPVTV Sbjct: 1204 ELVEAASNVTRGVPIATPVFDGAKEADVNDALVRAGFDTSGQSILFDGRTGEQFARPVTV 1263 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1264 GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1323 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1324 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVEE 1382 >gi|255019480|ref|ZP_05291576.1| DNA-directed RNA polymerase beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254971075|gb|EET28541.1| DNA-directed RNA polymerase beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 1362 Score = 1724 bits (4464), Expect = 0.0, Method: Composition-based stats. Identities = 729/1366 (53%), Positives = 986/1366 (72%), Gaps = 5/1366 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK+ I+ +P L+ Q SY FL ++ R GLQ F+S+ Sbjct: 1 MAYSFTEKKRIRKDFGKSQSILQVPYLLATQMDSYRDFLQADVPAAARKEVGLQEVFRSL 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ ++SG A L+FVSY + P FDV +C R LTY L++ LRL +++ D+ TGAK I Sbjct: 61 FPMESYSGNASLDFVSYRLEKPVFDVVECRQRGLTYCAGLRVRLRLALYEKDDSTGAKRI 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD+KEQ +YMG+LPLMT G FVI G +R++VSQLHRSPG+ FDHD+G+ SGKLL+ Sbjct: 121 KDVKEQDVYMGELPLMTDHGAFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFNA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD I+ RIDRRRK+P T+ L ALG +E+IL+ F+ + G Sbjct: 181 RIIPYRGSWLDFEFDPKDHIYARIDRRRKLPATTLLRALGYSTEDILAMFFETDTFRIDG 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK-FLGITSD 301 + L L G +V TGE V+ +GK++T+ ++ L E G + + + Sbjct: 241 KRIFYHLIPQRL-QGETAVFDIVHPKTGEVVVAAGKRVTARHVRQLSELGGEQEVEVPEA 299 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G +A+D+V+ TGE+ + A + +D + L ++ R + LY + ++ AYI T Sbjct: 300 FLLGKVLAQDLVDEATGEVIVAANEALDAEILARLYALPARSLRTLYTNELDRGAYISET 359 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D +D +A L+IYR+MRPG+ + A+++F LFF D+YDLS VGR+K N R+ Sbjct: 360 LRIDTARDAHEAQLEIYRLMRPGEPPSKDAAQNLFQGLFFSPDRYDLSAVGRMKFNRRVG 419 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + + EDII ++K+LV LRNG+G IDDID+LGNRRVRSVGE+++NQ+RLGL+R Sbjct: 420 REEITGPGVLSNEDIIDVLKVLVALRNGQGDIDDIDHLGNRRVRSVGELMENQFRLGLVR 479 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++K+R++ + + + PQDLINAKP+ + V EFF SSQLSQ + N LS +TH RR+ Sbjct: 480 VERAVKDRLALAESEGLTPQDLINAKPIAAVVNEFFGSSQLSQFMDQTNPLSEVTHKRRV 539 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL+ +AR NAYGF+ETP Sbjct: 540 SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSCYARTNAYGFLETP 599 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V G+ T++VVYLSA++E N IAQANS+LD+D +ELV CR E +L +++ Sbjct: 600 YRRVIAGRATDEVVYLSAIDEGNYVIAQANSTLDDDNRLVDELVSCRHRNETVLANPDQV 659 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 F+D SP+Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP ++++AP VGTGME VVA Sbjct: 660 QFMDISPRQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTVRSQAPLVGTGMERVVAI 719 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGAAI A R G+V+ VD RIV+R + + P GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 720 DSGAAIKAVRGGVVDSVDGARIVVRVNDEETLPGEPGVDIYNLVKYARSNQNTTLNQRPI 779 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VKVGD V R D++ADGPST++G+LALG+N+LVAFMPW+GYNFEDS+LISER+V+ED +T+ Sbjct: 780 VKVGDVVARGDVLADGPSTEMGELALGQNILVAFMPWNGYNFEDSILISERVVAEDRYTT 839 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF V ARDTKLGPEEITRDIPNV+E L+++DE GI+ +GAE+ PGDILVGK+TPK Sbjct: 840 IHIEEFSVFARDTKLGPEEITRDIPNVAEGALRHLDESGIVVIGAELAPGDILVGKVTPK 899 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D S+R+P+G+ GTV+DV++F R GI+K+ R+ ++E Sbjct: 900 GETQLTPEEKLLRAIFGEKASDVKDNSMRMPAGMYGTVIDVQVFTRDGIEKDARAKAIEE 959 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 EQ+ + +D DE I +++ + R+ +L + A GP G ++ + + PRSQW Sbjct: 960 EQLRKIRKDVHDEYRIFEQDSFQRIERLLLNKVAEGGPNGLAAGAKITKAYLKDLPRSQW 1019 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + ++ E+ +E ++ Q E + L+ + K K+ GDD+ PGVL++VKV VA+K Sbjct: 1020 FDIRLRSEESNAALEQIRAQLEQQRERLDAVLEEKRRKLTQGDDLSPGVLKMVKVHVAVK 1079 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I+P EDMP+L DGTPVDIVLNPLGVPSRMNVGQI ETHL Sbjct: 1080 RQLQPGDKMAGRHGNKGVVSKIVPVEDMPYLADGTPVDIVLNPLGVPSRMNVGQILETHL 1139 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA GLG++I+ ++ + +S +R+FL+++ E + +D+ +L +A + Sbjct: 1140 GWAAKGLGRRIEEML---ENQRQVSEIRAFLKEIYNRAGKKEDLDQLNDEDILELARNLR 1196 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA EE I ML +A L SGQ LYDG +GE FDRPVTVGY+YMLKL+H Sbjct: 1197 GGVPMATPVFDGASEEEIRDMLELAGLPRSGQVTLYDGRSGEAFDRPVTVGYMYMLKLHH 1256 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1257 LVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1316 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 V GR+++YESIV G+ + G PESFNVL+KE+++L + I+LE S Sbjct: 1317 VSGRSKMYESIVKGDFRMDAGMPESFNVLLKELRSLAIDIELEQSN 1362 >gi|16124757|ref|NP_419321.1| DNA-directed RNA polymerase subunit beta [Caulobacter crescentus CB15] gi|221233473|ref|YP_002515909.1| DNA-directed RNA polymerase subunit beta [Caulobacter crescentus NA1000] gi|41017786|sp|Q9AAU2|RPOB_CAUCR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765280|sp|B8GZW7|RPOB_CAUCN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|13421681|gb|AAK22489.1| DNA-directed RNA polymerase, beta subunit [Caulobacter crescentus CB15] gi|220962645|gb|ACL94001.1| DNA-directed RNA polymerase beta chain [Caulobacter crescentus NA1000] Length = 1356 Score = 1724 bits (4464), Expect = 0.0, Method: Composition-based stats. Identities = 848/1364 (62%), Positives = 1069/1364 (78%), Gaps = 8/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK FG+ PE + +P+LIEVQ++SY+ FL P R +EG++A FKSV Sbjct: 1 MAQSFTGKKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQRETRPGLRRDEGVEAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LE+VSYEF+ PK+DV++C+ RD+T+A PLK+ LRLIVF+ +E TGA+S+ Sbjct: 61 FPIKDFNERAVLEYVSYEFEEPKYDVEECIQRDMTFAAPLKVKLRLIVFETEEETGARSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KDI++VRIDRRRK+P T+FL ALGMD EEIL+TFY + + +R Sbjct: 181 RVIPYRGSWLDFEFDAKDIVYVRIDRRRKLPATTFLYALGMDGEEILTTFYDVVPFEKRS 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W P G K LVD DTGE+V +G K+T+ K + G+K L + + Sbjct: 241 GGWATPYKPE-RWRGVKPEFPLVDADTGEEVAPAGTKITARQAKKFADGGLKTLLLAPEA 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G Y+A D VN TGEIY EAGD +D S++ + I +L +D V AY+RNTL Sbjct: 300 LTGRYLARDAVNMATGEIYAEAGDELDVTSIQALADQGFSTIDVLDIDHVTVGAYMRNTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN R+DAL DIYRVMRPG+ T AE+MF LFFD+++YDLS+VGRVKMNMRL Sbjct: 360 RVDKNAIREDALFDIYRVMRPGEPPTVEAAEAMFKSLFFDAERYDLSSVGRVKMNMRLEQ 419 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D D+VR +RKED++A++K+LV LR+G+G IDDIDNLGNRRVRSVGE+L+NQYR+GLLRM Sbjct: 420 DVSDEVRILRKEDVLAVLKVLVGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRM 479 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+SSVDID+VMP DLINAKP +AV EFF SSQLSQ + N LS ITH RRLS Sbjct: 480 ERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS 539 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + ARVN YGFIE+PY Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPY 599 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DGK ++VVY+SAMEE IAQ+N + E G E+LV R GE L+ +E +D Sbjct: 600 RRVKDGKPQDEVVYMSAMEESKHVIAQSNIKVAE-GEIVEDLVPGRINGEPTLLQKETVD 658 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SP+QVVS+AA+LIPFLENDD+NR LMG NMQRQAVPL++++AP VGTGME+VVA+ Sbjct: 659 LMDVSPRQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVQSDAPLVGTGMEAVVARD 718 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA ++AKR G+VEQ+D RIVIR+ E DP+ SGVDIYR+ KFQRSNQ+TC+NQRPLV Sbjct: 719 SGAVVIAKRTGVVEQIDGTRIVIRATEE-TDPARSGVDIYRMSKFQRSNQSTCINQRPLV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD + DIIADGPST+LG+LALGRN LVAFMPW+GYNFEDS+LISER+V +DVFTSI Sbjct: 778 KVGDRIVAGDIIADGPSTELGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVFTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFEVMARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 838 HIEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GT+VDVR+FNRHG+DK+ER++++ER Sbjct: 898 ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERALAIERA 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +I+ L +D+DDE IL+RNI RL E+L G+ A+SGPKG + ++++ +++ WW Sbjct: 958 EIDRLGKDRDDEFAILNRNISGRLKELLIGKVALSGPKGLSRGE-ITAEGLAQVASGLWW 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 Q A++DEK +ESL+ ++ ++ L+ RF++K++K+Q GD++PPGV+++VKVFVA+KR Sbjct: 1017 QIALEDEKAMGELESLRRLFDENRKRLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++SRILP EDMPFL DGT VD+VLNPLGVPSRMNVGQIFETHLG Sbjct: 1077 KLQPGDKMAGRHGNKGVISRILPIEDMPFLADGTHVDVVLNPLGVPSRMNVGQIFETHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WAC LGK+I +L+ D++ G L L ++ G ++ ++ +A Sbjct: 1137 WACANLGKQITNLLEDWQQGGQKQALVERLTEIYGPDEELPD----TEEGLVELARNLGK 1192 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA + I L MA +++SGQSIL+DGLTGE F RPVTVGYIYMLKL+H+ Sbjct: 1193 GVPIATPVFDGARMDDIEGHLEMAGVNKSGQSILFDGLTGEQFKRPVTVGYIYMLKLHHL 1252 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1253 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1312 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT+VYESIV G+DTFE G PESFNVLVKEM++LGL+++LENS Sbjct: 1313 AGRTKVYESIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENS 1356 >gi|36333369|gb|AAP75742.1| RNA polymerase beta subunit [Bosea massiliensis] Length = 1370 Score = 1724 bits (4464), Expect = 0.0, Method: Composition-based stats. Identities = 882/1365 (64%), Positives = 1099/1365 (80%), Gaps = 15/1365 (1%) Query: 9 GLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF 68 G RVRKFFGK E+ +P+LIEVQKASYD FLM++ R +EGLQ+ FKSVFPI F Sbjct: 7 GRRRVRKFFGKLKEVAQMPNLIEVQKASYDQFLMVDEPKGGRGDEGLQSVFKSVFPIGDF 66 Query: 69 SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 SGA++LEFV Y F+PPK+DVD+C R +T++ PLK+TLRLIVFD+D T AKS+KDIKEQ Sbjct: 67 SGASLLEFVKYTFEPPKYDVDECRQRGMTFSAPLKVTLRLIVFDIDPDTQAKSVKDIKEQ 126 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A RIIP + Sbjct: 127 DVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARIIPYR 186 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+DIEFD+KDI++ RIDR+RK+PVTS L ALGMD EEILS FY I Y++ W P Sbjct: 187 GSWLDIEFDAKDIVYARIDRKRKIPVTSLLFALGMDGEEILSRFYNTITYTRDAKGWRVP 246 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 A M G K + L+D DTGE V+E+GKKL + + L EKG+KFL T + L G Y+ Sbjct: 247 YDAE-RMKGFKATVDLIDADTGEVVVEAGKKLVARTARQLAEKGLKFLRATDEDLVGQYI 305 Query: 309 AEDIVNGETGEIYIEAGDVID----------EKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 AED+V+ +TGE++ EAG+ + + +L E+ + +IP+L +D + YI Sbjct: 306 AEDLVDFQTGEVHAEAGEELTMSVDAKTGEAKGNLVELINKGYTEIPVLDIDHITVGPYI 365 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL DKN R++AL DIYRVMRPG+ T AE+MF LFFD+++YDLS VGRVKMNM Sbjct: 366 RNTLAVDKNSRREEALFDIYRVMRPGEPPTLETAENMFQSLFFDAERYDLSAVGRVKMNM 425 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 RL+LD D VR +RKEDI A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYRLG Sbjct: 426 RLDLDAEDTVRILRKEDIFAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLG 485 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LLRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH Sbjct: 486 LLRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHK 545 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFI Sbjct: 546 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFI 605 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E+PYR++ DG+ T++++YLSAMEE +AQAN+++D+DG T++L+ CR AGE I+ P Sbjct: 606 ESPYRRIRDGRQTDEIIYLSAMEEAKYNVAQANAAVDKDGRLTDDLIVCRRAGEVIVTPV 665 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +K+DF D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++A+APFVGTGME+V Sbjct: 666 DKVDFQDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAV 725 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+RAGIV+QVDA RIVIR+ + DP+ GVDIYRL KFQRSNQ+TC+ Q Sbjct: 726 VARDSGAAIAARRAGIVDQVDATRIVIRASDEM-DPTKPGVDIYRLQKFQRSNQSTCITQ 784 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLV+VGD +++ DI+ADGPST+ G+LALGRN+LVAFMPW+GYNFEDS+L+SE++VSEDV Sbjct: 785 RPLVRVGDVIKKGDIVADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSEKIVSEDV 844 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 845 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVAAGDILVGKI 904 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+ + Sbjct: 905 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERAQA 964 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDEQ ILDRN ++RL +IL G+ ++GPKGFKK TV++ + +SE+PR Sbjct: 965 IEREEIERLAKDRDDEQAILDRNTFARLADILTGKVGLAGPKGFKKDTVITREGMSEFPR 1024 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA D+ + +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1025 SQWWLFATADDALMTEIEAMRKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFV 1084 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI E Sbjct: 1085 AVKRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE 1144 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWA GLGK+I + ++ Y+ DI LR+ + V E I+ D++ ++ + + Sbjct: 1145 THLGWAAAGLGKQIGAALDAYRKGHDIKALRASFDAVYEDN---EIIASMDENELVEMGQ 1201 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 + GVP++TPVF+GA E I +L A L SGQS LYDG TGEPFDR VTVGYIYMLK Sbjct: 1202 NLRRGVPIATPVFNGAKEADIERLLEQAGLHSSGQSTLYDGRTGEPFDRKVTVGYIYMLK 1261 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1262 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1321 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 SDDV GRT+VYE+IV G DTFE G PE+FNVLVKEM++LGL+++L Sbjct: 1322 SDDVAGRTKVYEAIVRGEDTFEAGIPETFNVLVKEMRSLGLNVEL 1366 >gi|307946277|ref|ZP_07661612.1| DNA-directed RNA polymerase, beta subunit [Roseibium sp. TrichSKD4] gi|307769941|gb|EFO29167.1| DNA-directed RNA polymerase, beta subunit [Roseibium sp. TrichSKD4] Length = 1379 Score = 1723 bits (4463), Expect = 0.0, Method: Composition-based stats. Identities = 909/1378 (65%), Positives = 1127/1378 (81%), Gaps = 4/1378 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMN-IAPDERPNEGLQAAFKS 61 FNG +VRK+FG ++ +P+LIEVQKASYD FL ++ + R N+GL+A F+S Sbjct: 1 MTQTFNGRKKVRKYFGSIRDVAAMPNLIEVQKASYDQFLQVDEMPGGGRINDGLEAVFQS 60 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI+ F+G ++LEFVSYEF+ PK+DVD+C RD+T+A PLK+TLRLIVFDVDE TGAKS Sbjct: 61 VFPISDFAGTSILEFVSYEFEAPKYDVDECRQRDMTFAAPLKVTLRLIVFDVDEDTGAKS 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +KDIKEQ +YMGD+P MT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 VKDIKEQDVYMGDMPFMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 R+IP +G W+DIEFD+KDI+H RIDRRRK+PVTS LMALG+D EEIL+TFY ++ Y+++ Sbjct: 181 ARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGLDGEEILNTFYARVDYTRQ 240 Query: 242 GDF-WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 D W P D + G K S L+D D+GE V+E G+K+T+ +K L EK V L +T Sbjct: 241 KDGGWRMPFDG-DRLKGTKASYDLIDADSGEVVVEGGRKITARTIKQLAEKNVTALKMTD 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AEDIV+ +TGEIY EAG+ I K LEE+ D+P+L +D VN YIRN Sbjct: 300 EDLHGQYLAEDIVDAQTGEIYAEAGEEITGKLLEELVDRGYHDLPVLDIDHVNVGPYIRN 359 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN+ R+DAL DIYRVMRPG+ T AE+MF LFFD+++YDLS VGRVKMNMRL Sbjct: 360 TLSADKNESREDALFDIYRVMRPGEPPTIDTAEAMFQSLFFDAERYDLSAVGRVKMNMRL 419 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 ++D D VR +RKEDI+ +I++L+ LR+GKG IDDIDNLGNRRVRSVGE+++NQYR+GLL Sbjct: 420 DVDAEDTVRVLRKEDILEVIRVLLQLRDGKGDIDDIDNLGNRRVRSVGELMENQYRVGLL 479 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RR Sbjct: 480 RMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRR 539 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+ Sbjct: 540 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIES 599 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DG VTNDVVYLSAMEE Y+AQ+N+ D DG FTEEL+ CR AGE ++VP ++ Sbjct: 600 PYRKVKDGVVTNDVVYLSAMEEAKHYVAQSNAVYDADGRFTEELITCRHAGENMMVPSDR 659 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA Sbjct: 660 VDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVA 719 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SGAAI AKRAG+V+QVDA RIVIR+ E LDP SGVDIYRLMKFQRSNQNTC+NQRP Sbjct: 720 RDSGAAIGAKRAGVVDQVDATRIVIRATED-LDPGKSGVDIYRLMKFQRSNQNTCINQRP 778 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD+V + DIIADGPSTDLGDLALG+N+LVAFMPW+GYNFEDS+L+SER+VS+DVFT Sbjct: 779 LVRVGDKVHKGDIIADGPSTDLGDLALGKNVLVAFMPWNGYNFEDSILLSERIVSDDVFT 838 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIH+EEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAE++PGDILVGKITP Sbjct: 839 SIHLEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAELHPGDILVGKITP 898 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GVSGTVV+VR+FNRHG++K+ER++++E Sbjct: 899 KGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVEVRVFNRHGVEKDERAMAIE 958 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 RE+IE LA+D+DDEQ ILDRN+Y RL E+L G+ AV+GPKGFKK LS D ++E+PRSQ Sbjct: 959 REEIERLAKDRDDEQAILDRNVYGRLAEMLLGKTAVAGPKGFKKGGELSGDALNEFPRSQ 1018 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFA DEK +E+L+ QY+ S+ LE RF +K+EK+Q GD++PPGV+++VKVFVA+ Sbjct: 1019 WWQFATDDEKFMSEIEALRGQYDDSRKRLEQRFIDKVEKLQRGDELPPGVMKMVKVFVAV 1078 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I PCEDMPFL+DGT VDIVLNPLGVPSRMNVGQI ETH Sbjct: 1079 KRKLQPGDKMAGRHGNKGVVSKINPCEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETH 1138 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 +GWAC G+G +I + ++Y+ +G+I LR + ++ G + + +YDD+ V+R+AEQ Sbjct: 1139 MGWACRGMGLRIGEMYDEYRKSGEIEQLRGKIVEIYGDNMKGDNVKEYDDEGVVRLAEQL 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GV ++TPVFDGA E + L++AD SGQS+LYDG TGE FDR VTVGYIYMLKL+ Sbjct: 1199 KKGVSIATPVFDGAREPDVVEALKIADYHPSGQSVLYDGRTGEEFDRRVTVGYIYMLKLH 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 DV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+ + + Sbjct: 1319 DVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELQRTDQPQISDEPAAD 1376 >gi|84499871|ref|ZP_00998137.1| DNA-directed RNA polymerase beta subunit [Oceanicola batsensis HTCC2597] gi|84391805|gb|EAQ04073.1| DNA-directed RNA polymerase beta subunit [Oceanicola batsensis HTCC2597] Length = 1408 Score = 1721 bits (4457), Expect = 0.0, Method: Composition-based stats. Identities = 846/1379 (61%), Positives = 1079/1379 (78%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQKASYD FL P+ EG++ F+SV Sbjct: 31 MAQTFLGQKRLRKYYGKIREVLEMPNLIEVQKASYDLFLKSGDEPEPLDGEGIKGVFQSV 90 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LEFV YE + PK+DV++C RD+TY+ PLK+TLRLIVFD+DE TGAKS+ Sbjct: 91 FPIKDFNETAILEFVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDMDEDTGAKSV 150 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 151 KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 210 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + Y R Sbjct: 211 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYETVDYKLRK 270 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + LVD D+GE + E+ KK+T +K L ++G V+ L + D Sbjct: 271 GQGWVTKFFPERVRGTRPTYDLVDADSGEVIAEATKKITPRAVKKLIDEGNVQNLLVPFD 330 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA+DI+N ETG IY+EAGD + + +L+++ + I DIP+L +D+ Sbjct: 331 RIVGKFVAKDIINEETGAIYVEAGDELTLEYDKDGEITGGTLQDLLDAGITDIPVLDIDN 390 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 V+ Y+RNT+ DKN DR AL+DIYRVMRPG+ T A S+F+ LFFDS++YDLS V Sbjct: 391 VSVGPYMRNTMAQDKNMDRNSALMDIYRVMRPGEPPTVEAASSLFDSLFFDSERYDLSAV 450 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +RKEDI+A IK LV+LR+GKG +DDID+LGNRRVRSVGE++ Sbjct: 451 GRVKMNMRLALDAEDTQRTLRKEDIVACIKALVELRDGKGEVDDIDHLGNRRVRSVGELM 510 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 511 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 570 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 571 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 630 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR+V +G+VT++V Y+SA EE +AQAN++LDE+G F +LV R +G Sbjct: 631 VNKYGFIETPYRRVENGQVTDEVKYMSATEEMRHTVAQANANLDENGKFVNDLVNTRQSG 690 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 691 EYTLAPNETVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 750 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGAAI+AKR G+++QVDA RIV+R+ E L+ +GVDIYRL KFQRSN Sbjct: 751 GTGIEGVVARDSGAAIMAKRGGVIDQVDAQRIVVRATED-LELGDAGVDIYRLRKFQRSN 809 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVGD V + ++IADGPSTDLG+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 810 QNTCINQRPLVKVGDTVEKGEVIADGPSTDLGELALGKNVVVAFMPWNGYNYEDSILISE 869 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTS+HIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 870 RIARDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 929 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 930 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 989 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE+I L RD+DDE ILDRNIY+RL +++ G+ AV GPKG K ++ ++ D Sbjct: 990 KDERALQIEREEIARLGRDRDDELAILDRNIYARLRDLIIGKTAVKGPKGVKANSEITED 1049 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+S PRS WWQ A+ +++ + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1050 LLSSLPRSHWWQLALAEDQDAQIVEALNEQYEVQKRALDARFEDKVEKVRRGDDLPPGVM 1109 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++SR++P EDMPFL+DGTPVD LNPLGVPSRM Sbjct: 1110 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPQEDMPFLQDGTPVDFCLNPLGVPSRM 1169 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG K+ +++Y+ +GD++P+R L+ V G + E S D++ Sbjct: 1170 NVGQILETHMGWASRGLGLKVDEALDEYRRSGDMTPVRDALKIVYGDDVYDEGFSPMDEE 1229 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 +L A GVP++TPVFDGA E +N L A +ESGQSILYDG TGE F RPVTV Sbjct: 1230 RLLEAAGNVTRGVPIATPVFDGAKEHDVNDALVRAGFNESGQSILYDGRTGEQFARPVTV 1289 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1290 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1349 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1350 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEGEE 1408 >gi|254509921|ref|ZP_05121988.1| DNA-directed RNA polymerase, beta subunit [Rhodobacteraceae bacterium KLH11] gi|221533632|gb|EEE36620.1| DNA-directed RNA polymerase, beta subunit [Rhodobacteraceae bacterium KLH11] Length = 1382 Score = 1720 bits (4455), Expect = 0.0, Method: Composition-based stats. Identities = 837/1379 (60%), Positives = 1068/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL A EG++ F+SV Sbjct: 5 MAQTFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDAEQPADGEGIKGVFQSV 64 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV Y+ + PK+DV++C+ RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 65 FPIKDFNETSVLEFVKYDLEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 124 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 125 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 184 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + Y Sbjct: 185 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYNTVSYKLDK 244 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + L+D +GE + E+GKK+T +K L ++G V L + D Sbjct: 245 KKGWVTPFFPERVRGTRPTYDLIDAKSGEVIAEAGKKVTPRAVKKLIDEGNVTDLLVPFD 304 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G YVA+DI+N ETG IY+EAGD + + + +E+ + I DIP+L +D+ Sbjct: 305 NIVGKYVAKDIINEETGAIYVEAGDELTLEYDKDGDLIGGTAKELIDAGITDIPVLDIDN 364 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNT+ DKN R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 365 VNVGPYMRNTMAQDKNMSRETALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV 424 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD PD R + +EDI+A IK LV+LR+GKG +DDID+LGNRRVRSVGE++ Sbjct: 425 GRVKMNMRLALDKPDTQRTLDREDIVACIKALVELRDGKGDVDDIDHLGNRRVRSVGELM 484 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 485 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 544 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 545 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 604 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V D +VT++V Y+SA EE +AQAN++LD DG F +LV R AG Sbjct: 605 VNKYGFIETPYRVVKDAEVTDEVHYMSATEEMRHTVAQANATLDADGKFINDLVSTRQAG 664 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L PRE +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 665 DYTLAPRENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 724 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VA SGAAI AKRAGI++QVDA RIVIR+ E L+ +GVDIYRL KFQRSN Sbjct: 725 GTGIEEKVAIDSGAAIQAKRAGIIDQVDAQRIVIRATED-LELGDAGVDIYRLRKFQRSN 783 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPL+KVGD V++ ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 784 QNTCINQRPLIKVGDTVQKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 843 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTS+HIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 844 RIARDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 903 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 904 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 963 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ AV GPKG K +V++ + Sbjct: 964 KDERALQIEREEVERLARDRDDELAILDRNIYARLQGLILGKTAVKGPKGVKAGSVITEE 1023 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ R QWWQ A++ E+ + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1024 LLETLTRGQWWQLALEGEQDAQIVEALNEQYEVQKRALDARFEDKVEKVRRGDDLPPGVM 1083 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1084 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1143 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG I + +Y+ +GD++P+R ++ G + E ++ D+D Sbjct: 1144 NVGQILETHMGWAARGLGLNIDDALGEYRRSGDLTPVREAMKLAYGENVYEEGVAGMDED 1203 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 ++ A GVP++TPVFDGA E +N L A ESGQS+L+DG TGE F RPVTV Sbjct: 1204 HLIEAAGNVTRGVPIATPVFDGAKEADVNDALVRAGFSESGQSVLFDGRTGEQFARPVTV 1263 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1264 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1323 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1324 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVEE 1382 >gi|254419061|ref|ZP_05032785.1| DNA-directed RNA polymerase, beta subunit [Brevundimonas sp. BAL3] gi|196185238|gb|EDX80214.1| DNA-directed RNA polymerase, beta subunit [Brevundimonas sp. BAL3] Length = 1371 Score = 1719 bits (4453), Expect = 0.0, Method: Composition-based stats. Identities = 845/1367 (61%), Positives = 1075/1367 (78%), Gaps = 10/1367 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A F G R+RK FG+ PE + +P+LIEVQ+ASY+ FL + P +R +G++A FK Sbjct: 14 IASATSFTGKKRIRKSFGRIPEAVAMPNLIEVQRASYEQFLQREVRPGQRKEQGIEAVFK 73 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI F+ A+LE+VSYEF+ PK+DV++C+ RD+TYA PLK+ LRLIVF+ DE TGA+ Sbjct: 74 SVFPIKDFNERAILEYVSYEFEDPKYDVEECIQRDMTYAAPLKVKLRLIVFETDEETGAR 133 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 134 SVKDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 193 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+D EFD+KD+++VRIDRRRK+P T+FLM LGMD EEIL TFY + Y + Sbjct: 194 AARVIPYRGSWLDFEFDAKDVVYVRIDRRRKLPATTFLMGLGMDGEEILKTFYETVPYEK 253 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RG+ W P A G K LVD DTGE + ++G+K+++ K L + L + + Sbjct: 254 RGEGWVTPYKAE-RWRGVKPEFDLVDADTGEVIAQAGQKISARAAKKLGDT-TTSLSLAA 311 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L Y+A D VN ETGEI+ EAGD +D ++E + + I +L +D V AY+RN Sbjct: 312 DALVTKYLANDAVNFETGEIFAEAGDELDAPTIEVLEQNGFTTIEVLDIDHVTVGAYMRN 371 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL D+YRVMRPG+ T A++MFN LFFDS++YDLS VGRVKMNMRL Sbjct: 372 TLRIDKNDTREDALFDVYRVMRPGEPPTPEAADNMFNSLFFDSERYDLSAVGRVKMNMRL 431 Query: 421 N-LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 + D++R +RK+D++ +++ILV L++G+G IDDIDNLGNRRVRSVGE+L+NQYR+GL Sbjct: 432 ETPEVSDEIRVLRKDDVLKVLQILVGLKDGRGEIDDIDNLGNRRVRSVGELLENQYRVGL 491 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 LRMER+IKER+SSVDID+VMP DLINAKP +AV EFF SSQLSQ + N LS ITH R Sbjct: 492 LRMERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKR 551 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + ARVN YGFIE Sbjct: 552 RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIE 611 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 +PYR+V DG N+VVY+SAMEE IAQAN L ++GS E+LV R GE L+ R+ Sbjct: 612 SPYRRVKDGVAQNEVVYISAMEESKYTIAQANIEL-KNGSIVEDLVPGRINGESQLLNRD 670 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 +D +D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPL++++AP VGTGME+VV Sbjct: 671 AVDMMDVSPKQVVSVAAALIPFLENDDANRALMGANMQRQAVPLVQSDAPLVGTGMEAVV 730 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SGA +VA+R G+VEQ+D RIV+R+ GD+D + SGVDIYRL KFQRSNQ+TC+NQR Sbjct: 731 AVDSGAVVVARREGVVEQIDGTRIVVRAT-GDVDAARSGVDIYRLSKFQRSNQSTCINQR 789 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P+V+VGD+V+ D+IADGPSTDLG+LALGRN LVAFMPW+GYNFEDS+LISER+V +DVF Sbjct: 790 PIVRVGDQVKAGDVIADGPSTDLGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVF 849 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIH+EEFEVMARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PGDILVGK+T Sbjct: 850 TSIHLEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVT 909 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GT+VDVR+FNRHG+DK+ER++++ Sbjct: 910 PKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERAMAI 969 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ER +IE L +D+DDE IL+RN+Y RL ++ G+NAVSGPKG + L+ + ++E R Sbjct: 970 ERAEIERLGKDRDDELKILERNVYGRLKPLILGKNAVSGPKGIGRGE-LTEEKLAEVSRG 1028 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 WWQ A+ DEK +E++K Q+E ++ L+ RF++K+EK+Q GD++PPGV+++VKVFVA Sbjct: 1029 LWWQIALDDEKAMGELEAMKRQFEDARKQLDRRFEDKVEKLQRGDELPPGVMKMVKVFVA 1088 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR +Q GDKMAGRHGNKG++S+ILP EDMP L+DGT VD+VLNPLGVPSRMN+GQIFET Sbjct: 1089 VKRKLQPGDKMAGRHGNKGVISKILPIEDMPHLEDGTHVDVVLNPLGVPSRMNIGQIFET 1148 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 HLGWA GLGK+I L+ ++ G L L + G + + D++ ++ +A+ Sbjct: 1149 HLGWAAAGLGKQISGLLEAWQQGGQKQALIDRLTHIYGPETPLPQ----DEEELIELAKN 1204 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 GVP +TPVFDGA I +L A L++S QSILYDG TGE F RPVTVGYIYMLKL Sbjct: 1205 LSKGVPFATPVFDGAHIGDIERLLEEAGLNKSAQSILYDGQTGEQFKRPVTVGYIYMLKL 1264 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1265 HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1324 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT+VYE+IV G+D+FE G PESFNVL+KEM++LGL+++LENS Sbjct: 1325 DDVAGRTKVYEAIVRGDDSFEAGIPESFNVLIKEMRSLGLNVELENS 1371 >gi|53804616|ref|YP_113541.1| DNA-directed RNA polymerase subunit beta [Methylococcus capsulatus str. Bath] gi|81682419|sp|Q60A06|RPOB_METCA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|53758377|gb|AAU92668.1| DNA-directed RNA polymerase, beta subunit [Methylococcus capsulatus str. Bath] Length = 1358 Score = 1719 bits (4452), Expect = 0.0, Method: Composition-based stats. Identities = 744/1364 (54%), Positives = 985/1364 (72%), Gaps = 6/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK +++++P L+ Q SY FL ++ P R +EGL AA KSV Sbjct: 1 MAYSFTEKKRIRKSFGKRQDVLEVPYLLATQVDSYRRFLQLDKQPAARSDEGLHAALKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG +LE+VSY P FDV +C R TYA PL++ +RL+V+D D GAK + Sbjct: 61 FPIKSHSGNIVLEYVSYRLGDPVFDVKECQQRGTTYAAPLRVLVRLVVYDKDAPVGAKVV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DIKEQ IYMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLL+ Sbjct: 121 RDIKEQEIYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFNA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P T L ALG D+E+I++ F+ + Sbjct: 181 RIIPYRGSWLDFEFDHKDCVYVRIDRRRKLPATVLLRALGYDNEQIIAEFFDTNRFLLSS 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G S + D + V+E ++T+ ++ L+++ V L + D Sbjct: 241 AGIQLELIPERL-RGDIASFDIRLGD--QIVVEKDHRITARHIRMLQKENVNLLDVPKDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A ++V+ TGE+ + I E + + I +I LYV+ ++ YI NT+ Sbjct: 298 LYGKILAHNVVDTSTGELIAKVNQEITEDVYARLVAAAIPEIRTLYVNDLDRGPYISNTM 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + + DAL++IYR+MRPG+ T A+++F LFF +++YDLS VGR+K N RL Sbjct: 358 RIDLTETQLDALVEIYRMMRPGEPPTKEAAQTLFENLFFSAERYDLSAVGRMKFNRRLGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 P + +DIIA++K L+++RNG GT+DDID+LGNRRVRSVGEM++NQ+RLGL+R+ Sbjct: 418 TDPTGPGVLENDDIIAVLKELINIRNGGGTVDDIDHLGNRRVRSVGEMVENQFRLGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D D +MPQ++INAKPV +++ EFF SSQLSQ + N LS +TH RR+S Sbjct: 478 ERAVKERLSLPDADGLMPQEIINAKPVAASIKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+AR RAG E+RDVH THYGR+CP ET EG NIGL++SL ++R N YGF+ETPY Sbjct: 538 ALGPGGLARERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLAVYSRTNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG+VT+ + YLSA+EE YIAQA++S+DE+G +ELV CR E L RE I+ Sbjct: 598 RKVIDGRVTDQIEYLSAIEEGQYYIAQASASVDENGMLKDELVSCRHKDEFTLASRENIN 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S KQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTGME +VA+ Sbjct: 658 YMDVSSKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRTEKPLVGTGMERIVARD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG A+VAKR G VE VDA RIV+R + + + GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 718 SGVAVVAKRGGTVEFVDASRIVVRVNDEETEAGVPGVDIYNLTKYTRSNQNTCINQRPLV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V RND++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V +D FT+I Sbjct: 778 KPGDVVARNDVLADGPSTDMGELALGQNLLVAFMPWNGYNFEDSILISERVVQDDRFTTI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE +ARDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 838 HIEEKTCVARDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKAGDILVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R G+ K+ER+ +E Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMDGTVIDVQVFTRDGVKKDERARQIEEA 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE + +D +D+ I++++ Y R +++ G+ A GP G K+ ++ + + +QW Sbjct: 958 EIERVRKDLNDQLRIIEKDFYQRAEQMVLGKVADMGPGGLKRGATITREYLDSIKPAQWL 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +QDE V +E++ Q + + R + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1018 EIRLQDEDVNLQIEAIAEQIAQQREEIAKRLEEKRRKITMGDDLAPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++SRI+P EDMP+ DGTPVDIVLNPLGVPSRMNVGQ+ ETHLG Sbjct: 1078 RIQPGDKMAGRHGNKGVISRIVPVEDMPYSADGTPVDIVLNPLGVPSRMNVGQVLETHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA G+G KI ++ +A I +RSFL +V E I+ D VL +A + Sbjct: 1138 WAAKGVGLKIGRML---EAKAKIEEIRSFLTQVYNVSGRQEDIASLSDAEVLELAGNLQD 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA EE I +MLR+ADL ESGQ+ L+DG TG+ FDRPVTVGY+YMLKLNH+ Sbjct: 1195 GVPMATPVFDGATEEDIKAMLRLADLPESGQATLFDGRTGDVFDRPVTVGYMYMLKLNHL 1254 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1255 VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E PESFNVL+KE+++LG++I+LE Sbjct: 1315 NGRTKMYKNIVDGDHRMEAAMPESFNVLIKEIRSLGINIELEQD 1358 >gi|302382706|ref|YP_003818529.1| DNA-directed RNA polymerase subunit beta [Brevundimonas subvibrioides ATCC 15264] gi|302193334|gb|ADL00906.1| DNA-directed RNA polymerase, beta subunit [Brevundimonas subvibrioides ATCC 15264] Length = 1371 Score = 1718 bits (4450), Expect = 0.0, Method: Composition-based stats. Identities = 848/1367 (62%), Positives = 1067/1367 (78%), Gaps = 10/1367 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A F G R+RK FG+ PE + +P+LIEVQ+ SY+ FL + P R +G++A FK Sbjct: 14 IASATTFTGKKRIRKSFGRIPEAVQMPNLIEVQRESYEQFLQREVRPGVRKEQGIEAVFK 73 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI F+ A+LE+VSYEF+ PK+DV++C+ RD+TYA PLK+ LRLIVF+ DE TGA+ Sbjct: 74 SVFPIKDFNERAVLEYVSYEFEDPKYDVEECIQRDMTYAAPLKVKLRLIVFEADEETGAR 133 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 134 SVKDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 193 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+D EFD+KDI+ VRIDRRRK+P ++FLMALGMD EEIL TFY + Y + Sbjct: 194 AARVIPYRGSWLDFEFDAKDIVFVRIDRRRKLPASTFLMALGMDGEEILRTFYETVPYEK 253 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RGD W P A G K LVD DTGE V ++G+K+++ K L + K L + + Sbjct: 254 RGDGWVTPYKAE-RWRGVKPEFDLVDADTGEIVAQAGQKISARAAKKLGDT-TKSLSLAA 311 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L Y+A D VN ETGEIY EAGD +D ++E + I +L +D V AY+RN Sbjct: 312 DALVTRYLAADAVNYETGEIYAEAGDELDAPTIELLEERGFTTIDVLDIDHVTVGAYMRN 371 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DK+ R+DAL DIYRVMRPG+ T AE+MFN LFFD ++YDLS VGRVKMNMRL Sbjct: 372 TLRVDKSTGREDALFDIYRVMRPGEPPTPEAAEAMFNSLFFDGERYDLSAVGRVKMNMRL 431 Query: 421 N-LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 + D++R ++K+D++ +++ILV L++G+G IDDIDNLGNRRVRSVGE+L+NQYR+GL Sbjct: 432 ETPEVSDEIRVLQKDDVLKVLQILVGLKDGRGEIDDIDNLGNRRVRSVGELLENQYRVGL 491 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 LRMER+IKER+SSVDID+VMP DLINAKP ++V EFF SSQLSQ + N LS ITH R Sbjct: 492 LRMERAIKERMSSVDIDTVMPHDLINAKPAAASVREFFGSSQLSQFMDQTNPLSEITHKR 551 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + ARVN YGFIE Sbjct: 552 RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIE 611 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 +PYR+V DGK ++VVY+SAMEE IAQAN +L +DG +ELV R G+ L+ R Sbjct: 612 SPYRRVKDGKALDEVVYISAMEESKYTIAQANIAL-KDGMIVDELVPGRINGDSQLLIRA 670 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 +D +D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPL++++AP VGTGME+VV Sbjct: 671 DVDMMDVSPKQVVSVAAALIPFLENDDANRALMGANMQRQAVPLVQSDAPLVGTGMEAVV 730 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A+ SGA +VA+R G+VEQ+D RIV+R+ GDLD SGVDIYRL KFQRSNQ+TC+NQR Sbjct: 731 ARDSGAVVVARRDGVVEQIDGTRIVVRAT-GDLDAGRSGVDIYRLSKFQRSNQSTCINQR 789 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P+V+VGDEV+ D+IADGPSTDLG+LALGRN LVAFMPW+GYNFEDS+LISER+V +DVF Sbjct: 790 PIVRVGDEVKTGDVIADGPSTDLGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVF 849 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIH+EEFEVMARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PGDIL GK+T Sbjct: 850 TSIHLEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILCGKVT 909 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GT+VDVR+FNRHG+DK+ER++S+ Sbjct: 910 PKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERAMSI 969 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ER++IE L +D+DDE IL+RN Y RL +L G+NAVSGPKG + V + + E R Sbjct: 970 ERDEIERLGKDRDDELAILERNTYGRLKPLLLGKNAVSGPKGLGRGEV-TDAKLGELSRG 1028 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 WWQ A+ DEK +E +K +E ++ L+ RF++K+EK+Q GD++PPGV+++VKVFVA Sbjct: 1029 LWWQIALDDEKAMGELEQMKKSFEDARKALDRRFEDKVEKLQRGDELPPGVMKMVKVFVA 1088 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR +Q GDKMAGRHGNKG++S+ILP EDMP L+DGT VD+VLNPLGVPSRMN+GQIFET Sbjct: 1089 VKRKLQPGDKMAGRHGNKGVISKILPIEDMPHLEDGTSVDVVLNPLGVPSRMNIGQIFET 1148 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 HLGWA GLGK+I+ L+ ++ G L L + G + + D+ ++ +A+ Sbjct: 1149 HLGWASAGLGKQIQGLLEAWQGGGQKQALIDHLTGIYGEDTPLPQ----DEHELVELAQN 1204 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 GVP +TPVFDGA I +L A L+ SGQSI+YDG TGE F RPVTVGYIYMLKL Sbjct: 1205 LSKGVPFATPVFDGAHISDIEDLLEKAGLERSGQSIVYDGTTGEQFKRPVTVGYIYMLKL 1264 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1265 HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1324 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT+VYE+IV G+D+FE G PESFNVL+KEM++LGL+++LENS Sbjct: 1325 DDVAGRTKVYEAIVRGDDSFEAGIPESFNVLIKEMRSLGLNVELENS 1371 >gi|295688173|ref|YP_003591866.1| DNA-directed RNA polymerase subunit beta [Caulobacter segnis ATCC 21756] gi|295430076|gb|ADG09248.1| DNA-directed RNA polymerase, beta subunit [Caulobacter segnis ATCC 21756] Length = 1356 Score = 1718 bits (4450), Expect = 0.0, Method: Composition-based stats. Identities = 850/1364 (62%), Positives = 1070/1364 (78%), Gaps = 8/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK FG+ PE + +P+LIEVQ++SY+ FL + P +R +EG++A FKSV Sbjct: 1 MAQSFTGKKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQREVRPGQRRDEGVEAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LE+VSYEF+ PK+DV++C+ RD+T+A PLK+ LRLIVF+ +E TGA+S+ Sbjct: 61 FPIKDFNERAVLEYVSYEFEEPKYDVEECIQRDMTFAAPLKVKLRLIVFETEEETGARSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KDI++VRIDRRRK+P T+FL ALGMD EEIL+TFY + + +R Sbjct: 181 RVIPYRGSWLDFEFDAKDIVYVRIDRRRKLPATTFLYALGMDGEEILTTFYDVVPFEKRA 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W P G K LVD DTGE+V +G K+T+ K + G+K L + + Sbjct: 241 GGWATPYKPE-RWRGVKPEFPLVDADTGEEVAPAGTKITARQAKKFADGGLKTLLLAPEA 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G Y+A D VN TGEIY EAGD +D +++ + I +L +D V AY+RNTL Sbjct: 300 LTGRYLARDAVNVGTGEIYAEAGDELDVPTIQALADQGFSTIDVLDIDHVTVGAYMRNTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN R+DAL DIYRVMRPG+ T AE+MF LFFDS++YDLS+VGRVKMNMRL Sbjct: 360 RVDKNAIREDALFDIYRVMRPGEPPTVEAAEAMFKSLFFDSERYDLSSVGRVKMNMRLEQ 419 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D D+VR +RKED++A++K+LV LR+G+G IDDIDNLGNRRVRSVGE+L+NQYR+GLLRM Sbjct: 420 DVSDEVRILRKEDVLAVLKVLVGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRM 479 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+SSVDID+VMP DLINAKP +AV EFF SSQLSQ + N LS ITH RRLS Sbjct: 480 ERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS 539 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + ARVN YGFIE+PY Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPY 599 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DGK ++VVY+SAMEE IAQ+N + + G E+LV R GE L+ +E +D Sbjct: 600 RRVKDGKPLDEVVYMSAMEESKHVIAQSNIKV-DAGEIVEDLVPGRINGEPTLLQKETVD 658 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SP+QVVS+AA+LIPFLENDD+NR LMG NMQRQAVPL++++AP VGTGME+VVA+ Sbjct: 659 LMDVSPRQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVQSDAPLVGTGMEAVVARD 718 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA ++AKR G+VEQ+D RIVIR+ E D + SGVDIYR+ KFQRSNQ+TC+NQRPLV Sbjct: 719 SGAVVIAKRTGVVEQIDGTRIVIRATEE-TDAARSGVDIYRMSKFQRSNQSTCINQRPLV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD++ DIIADGPST+LG+LALGRN LVAFMPW+GYNFEDS+LISER+V +DVFTSI Sbjct: 778 KVGDKIVAGDIIADGPSTELGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVFTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFEVMARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 838 HIEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GT+VDVR+FNRHG+DK+ER++++ER Sbjct: 898 ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERALAIERA 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +I+ L +D+DDE IL+RNI RL E+L G A+SGPKG + +++D +S+ WW Sbjct: 958 EIDRLGKDRDDEFAILNRNISGRLRELLIGNVALSGPKGLSRGE-ITADALSQIQPGLWW 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 Q A++DEK +ESL+ ++ ++ L+ RF++K++K+Q GD++PPGV+++VKVFVA+KR Sbjct: 1017 QIALEDEKAMGELESLRRLFDENRKRLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++SRILP EDMPFL DGT VD+VLNPLGVPSRMNVGQIFETHLG Sbjct: 1077 KLQPGDKMAGRHGNKGVISRILPIEDMPFLADGTHVDVVLNPLGVPSRMNVGQIFETHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WAC LGK+I +L+ D++A G L L + G + + ++ +A+ Sbjct: 1137 WACANLGKQITNLMEDWQAGGQKQALIDRLRDIYGPDEELPETE----EELIELAKNLGK 1192 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA I L MA +++SGQSILYDGLTGE F RPVTVGYIYMLKL+H+ Sbjct: 1193 GVPIATPVFDGARMSDIEDHLEMAGVNKSGQSILYDGLTGEQFKRPVTVGYIYMLKLHHL 1252 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1253 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1312 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT+VYESIV G+DTFE G PESFNVLVKEM++LGL+++LENS Sbjct: 1313 AGRTKVYESIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENS 1356 >gi|254504227|ref|ZP_05116378.1| DNA-directed RNA polymerase, beta subunit [Labrenzia alexandrii DFL-11] gi|222440298|gb|EEE46977.1| DNA-directed RNA polymerase, beta subunit [Labrenzia alexandrii DFL-11] Length = 1409 Score = 1718 bits (4450), Expect = 0.0, Method: Composition-based stats. Identities = 903/1379 (65%), Positives = 1126/1379 (81%), Gaps = 4/1379 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMN-IAPDERPNEGLQAAFK 60 FNG +VRK+FG ++ +P+LIEVQKASYD FL ++ + R +EGL+A F+ Sbjct: 30 TMTQTFNGRKKVRKYFGSIRDVAAMPNLIEVQKASYDQFLQVDEMPGGGRKDEGLEAVFQ 89 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ F+G ++LEFVSYEF+ PK+DVD+C RD+T+A PLK+TLRLIVFDVDE TGAK Sbjct: 90 SVFPISDFAGTSLLEFVSYEFEAPKYDVDECRQRDMTFAAPLKVTLRLIVFDVDEDTGAK 149 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+P MT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 150 SVKDIKEQDVYMGDMPFMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 209 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+H RIDRRRK+PVTS LMALG+D EE+L+TFY ++ Y++ Sbjct: 210 AARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGLDGEEVLNTFYKQVEYTR 269 Query: 241 RGDF-WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 + D W P L G K S L+D D+G+ V+E G+K+T+ +K L EKGV L +T Sbjct: 270 QKDGSWRMPFDGERL-KGTKASYDLIDADSGDVVVEGGRKITARTIKQLGEKGVTALKVT 328 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + L G Y+AEDIV+ ++GEIY EAG I K LEE+ D+ IL +D VN YIR Sbjct: 329 DEDLHGQYLAEDIVDAQSGEIYAEAGGEITGKLLEELVDRGYHDLTILDIDHVNTGPYIR 388 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 NTL DKN+ R+DAL DIYRVMRPG+ T AE+MF LFFD ++YDLS VGRVKMNMR Sbjct: 389 NTLNVDKNESREDALFDIYRVMRPGEPPTIDTAEAMFQSLFFDDERYDLSAVGRVKMNMR 448 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 L++D D VR +RKEDI+ +I++L++LR+GKG IDDIDNLGNRRVRSVGE+++NQYR+GL Sbjct: 449 LDVDAEDTVRVLRKEDILEVIRVLLELRDGKGDIDDIDNLGNRRVRSVGELMENQYRVGL 508 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 LRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH R Sbjct: 509 LRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKR 568 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE Sbjct: 569 RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIE 628 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 +PYRKV DG VTN+VVYLSAMEE Y+AQ+N+ D++G FT EL+ CR AGE ++VP E Sbjct: 629 SPYRKVKDGTVTNEVVYLSAMEEAKHYVAQSNAEYDDEGRFTTELITCRHAGENMMVPSE 688 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 K+D +D SPKQ+VS+AASLIPFLENDD+NR LMG NM RQAVPL++AEAPFVGTGMESVV Sbjct: 689 KVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQAVPLVRAEAPFVGTGMESVV 748 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A+ SGAAI A+RAG+V+QVDA RIVIR+ E LDP SGVDIYRL K+QRSNQNTC+NQR Sbjct: 749 ARDSGAAIGARRAGVVDQVDATRIVIRATEE-LDPGRSGVDIYRLQKYQRSNQNTCINQR 807 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 PLV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYNFEDS+L+SER+VS+DVF Sbjct: 808 PLVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLSERIVSDDVF 867 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIH+EEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAE++PGDILVGKIT Sbjct: 868 TSIHLEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAELHPGDILVGKIT 927 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GVSGTVV+VR+FNRHG++K+ER++++ Sbjct: 928 PKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVEVRVFNRHGVEKDERAMAI 987 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ERE+IE LA+D+DDEQ ILDRN+Y RL E+L + AV+GPKGFKK TVL+ D+++++PRS Sbjct: 988 EREEIERLAKDRDDEQAILDRNVYGRLAEMLMDKTAVAGPKGFKKDTVLTGDVLNDFPRS 1047 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 QWWQFA +DEK +E+L+ QY+ S+ LE RF +K+EK+Q GD++PPGV+++VKVFVA Sbjct: 1048 QWWQFASEDEKFMSEIEALRGQYDDSRKRLEQRFIDKVEKLQRGDELPPGVMKMVKVFVA 1107 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR +Q GDKMAGRHGNKG+VS+I PCEDMPFL+DGT VDIVLNPLGVPSRMNVGQI ET Sbjct: 1108 VKRKLQPGDKMAGRHGNKGVVSKINPCEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILET 1167 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 H+GWAC G+G +I + ++Y+ G+I LR + ++ G + + ++DD+ V+++AEQ Sbjct: 1168 HMGWACRGMGLRIGEMYDEYRKTGEIEKLRGKVIEIYGDNMKGDAVKEFDDEGVVKLAEQ 1227 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 K GV ++TPVFDGA E + L++AD D SGQS L+DG TGE FDR VTVGYIYMLKL Sbjct: 1228 LKKGVSIATPVFDGAREPDVVDALKIADFDTSGQSTLFDGRTGEEFDRKVTVGYIYMLKL 1287 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1288 HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1347 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 DDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+ + + E Sbjct: 1348 DDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELQRTDVPAIGEEETAD 1406 >gi|315499974|ref|YP_004088777.1| DNA-directed RNA polymerase, beta subunit [Asticcacaulis excentricus CB 48] gi|315417986|gb|ADU14626.1| DNA-directed RNA polymerase, beta subunit [Asticcacaulis excentricus CB 48] Length = 1357 Score = 1718 bits (4449), Expect = 0.0, Method: Composition-based stats. Identities = 854/1366 (62%), Positives = 1070/1366 (78%), Gaps = 9/1366 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + F R+RK FG+ PE I +P+LIEVQ++SY+ FL + ER ++GL+A FKSV Sbjct: 1 MALSFTEKKRIRKSFGRIPEAIRMPNLIEVQRSSYEQFLQRFVRASERVDDGLEAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ F+ A LE+VSYEF+ PK+DV++C+ RD+TYA PLK+ LRLIVF+ DE TGA+S+ Sbjct: 61 FPVKDFNERATLEYVSYEFEEPKYDVEECIQRDITYAAPLKVKLRLIVFETDEDTGARSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 KDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFGA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI++VRIDRRRK+P T+FL ALGMD EEIL+TFY + Y +R Sbjct: 181 RIIPYRGSWLDFEFDAKDIVYVRIDRRRKLPATTFLSALGMDGEEILTTFYDVVPYEKRD 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W P + G K L+D D+GE V ++G K+++ K L + VK L ++ D Sbjct: 241 AGWVTPY-KFERWRGVKPEFDLIDADSGEVVAQAGTKISARTAKKLGDT-VKALLLSPDA 298 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G Y+A D VN ETGEIY EAGD +D +++ + I +L +D V AY+RNTL Sbjct: 299 LNGKYLARDAVNFETGEIYAEAGDELDPAAIKVLEEQGFTTIDVLDIDHVTVGAYLRNTL 358 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN R+DAL DIYRVMRPG+ T AE+MF LFF+ ++YDLS VGRVKMNMRL Sbjct: 359 RVDKNTSREDALFDIYRVMRPGEPPTIEAAEAMFQGLFFELERYDLSAVGRVKMNMRLEQ 418 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D D R +RK+DI+ I++IL+ LR+G+G IDDIDNLGNRRVRSVGE+L+NQYR+GLLRM Sbjct: 419 DVADSERTLRKDDILKILRILIGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRM 478 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+SSVDID+VMP DLINAKP +AV EFF SSQLSQ + N LS ITH RRLS Sbjct: 479 ERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS 538 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + ARVN YGFIE+PY Sbjct: 539 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPY 598 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGK ++VVY+SAMEE IAQAN L ++G E+LV R GE L P +D Sbjct: 599 RKVIDGKPQDEVVYMSAMEESKHVIAQANIKLGDEGI-VEDLVPGRVNGEPGLQPAPTVD 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPL+KA+APFVGTGMESVVA+ Sbjct: 658 YMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKADAPFVGTGMESVVARD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA I A+R G++EQVDA RIV+R+ + LDP+ GVDIYRL KFQRSNQNTC+NQRP+V Sbjct: 718 SGATIAARRTGVIEQVDATRIVVRATDE-LDPTKPGVDIYRLSKFQRSNQNTCINQRPIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD+V DIIADGPSTDLGDLALGRN+LVAFMPW+GYNFEDS+LISER+V +D+FTSI Sbjct: 777 NVGDKVSAGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILISERIVRDDIFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 H+EEFEVMARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 837 HLEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GT+V+VR+FNRHG+DK+ER++++ER Sbjct: 897 ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGVDKDERAMAIERA 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE L +D+DDE IL+RNIY RL E++ GQ AVSGPKG + ++ + +SE + WW Sbjct: 957 EIERLGKDRDDELSILERNIYGRLKEVILGQTAVSGPKGLGRGE-ITEEKLSEISKGLWW 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 Q A++DEK+ +E++K Q+E ++ L+ RF++K+EK+Q GD++PPGV+++VKVFVA+KR Sbjct: 1016 QIALEDEKLMGELEAMKRQFEEARKRLDRRFEDKVEKLQRGDELPPGVMKMVKVFVAVKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++S+ILP EDMPFL DG VDIVLNPLGVPSRMNVGQIFETHLG Sbjct: 1076 KLQPGDKMAGRHGNKGVISKILPVEDMPFLADGEHVDIVLNPLGVPSRMNVGQIFETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WAC +GK+I +L+ +++ G L L+ G + ++ ++++A+ Sbjct: 1136 WACANIGKQITNLLEEWQNGGQKQALIDHLKGAYGADQELPE----TEEELIQLAKNLAR 1191 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA I +ML A LD SGQSILYDGLTGE F RPVTVG IYMLKL+H+ Sbjct: 1192 GVPIATPVFDGAHINDIENMLEFAGLDRSGQSILYDGLTGEQFKRPVTVGIIYMLKLHHL 1251 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1252 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1311 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 GRT+VYE+IV G+D+FE G PESFNVL+KEM++LGL+++LEN + Sbjct: 1312 AGRTKVYEAIVRGDDSFEAGIPESFNVLIKEMRSLGLNVELENGQG 1357 >gi|254470475|ref|ZP_05083879.1| DNA-directed RNA polymerase, beta subunit [Pseudovibrio sp. JE062] gi|211960786|gb|EEA95982.1| DNA-directed RNA polymerase, beta subunit [Pseudovibrio sp. JE062] Length = 1380 Score = 1717 bits (4448), Expect = 0.0, Method: Composition-based stats. Identities = 902/1374 (65%), Positives = 1119/1374 (81%), Gaps = 3/1374 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 FNG RVRK+FG ++ +P+LIEVQKASYD FL ++ D R +EGL+A FKSV Sbjct: 1 MTQTFNGRKRVRKYFGSIRDVAAMPNLIEVQKASYDQFLQVDKVEDSRVDEGLEAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+ F+G ++LEFV YEF+ PK+DV++C RD+TYA PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPISDFAGNSLLEFVDYEFEAPKYDVEECRQRDMTYAAPLKLTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+P MT +GTFVI G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYMGDIPFMTDNGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+DIEFD+KDI+H RIDRRRK+PVTS LMALG+DSE+IL+TFY +I Y + G Sbjct: 181 RVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGLDSEDILNTFYKRIDYVRSG 240 Query: 243 DF-WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 + W P A L G K + +VD +GE V+E+GKK+T+ ++ L EKGVK L T + Sbjct: 241 ENSWSVPFDGARL-KGTKAVNDMVDAASGEVVVEAGKKITARTIRQLTEKGVKSLKGTDE 299 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G Y+AEDIV+ TGEIY EAG+ + EK L E+ D+P+L +D VN YIRNT Sbjct: 300 DLYGQYLAEDIVDMGTGEIYAEAGEELTEKLLHELIERGYHDLPVLDIDYVNVGPYIRNT 359 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L DKN R+ AL DIYRVMRPG+ T AE+MF LFFD+++YDLS VGRVKMNMRL+ Sbjct: 360 LAADKNDSREGALFDIYRVMRPGEPPTLETAEAMFQSLFFDAERYDLSAVGRVKMNMRLD 419 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 L+ D VR +RKEDI+++I +L+DLR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLR Sbjct: 420 LECEDTVRVLRKEDILSVIGLLLDLRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLR 479 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 MER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RRL Sbjct: 480 MERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRL 539 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+P Sbjct: 540 SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP 599 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V DGKVT DVVYLSAMEE Y++QAN+ ++EDGSF +LV CR AGE ILV +++ Sbjct: 600 YRRVIDGKVTKDVVYLSAMEESKYYVSQANAEMNEDGSFVNDLVQCRHAGENILVTSDRV 659 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D +D SPKQ+VS+AASLIPFLENDD+NR LMG NM RQAVPL++A+APFVGTGME +VA+ Sbjct: 660 DLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQAVPLVRAQAPFVGTGMEPIVAR 719 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGAAI A+R G+V+QVDA RIVIR+ E LDPS SGVDIYRLMKFQRSNQ+TC+NQRPL Sbjct: 720 DSGAAIGARRGGVVDQVDATRIVIRATED-LDPSKSGVDIYRLMKFQRSNQDTCINQRPL 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD VR+ DIIADGPSTDLGDLALGRN++VAFMPW+GYNFEDS+L+SER+V +DVFTS Sbjct: 779 VNVGDRVRKGDIIADGPSTDLGDLALGRNVMVAFMPWNGYNFEDSILLSERIVRDDVFTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IH+EEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ VGAEV PGDILVGKITPK Sbjct: 839 IHLEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYVGAEVKPGDILVGKITPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GESPMTPEEKLLRAIFGEKA DVRDTSLR+ GV GTVV+VR+FNRHG++K+ER++++ER Sbjct: 899 GESPMTPEEKLLRAIFGEKASDVRDTSLRLSPGVVGTVVEVRVFNRHGVEKDERAMAIER 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E+IE LA+D+DDEQ ILDRN+Y RL E++ G AV GPK F+K + ++++E+PRSQW Sbjct: 959 EEIERLAKDRDDEQAILDRNVYGRLAEMIMGHVAVGGPKNFRKGVEIDGNVLNEFPRSQW 1018 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 WQFAV+DE++ +E+L+ Y+ S+ LE RF +K+EK+Q GD++PPGV+++VKVFVA+K Sbjct: 1019 WQFAVEDEQLMSELEALRGSYDESRKRLEQRFIDKVEKLQRGDELPPGVMKMVKVFVAVK 1078 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG+VS+I PCEDMPFL+DG VDIVLNPLGVPSRMNVGQI ETHL Sbjct: 1079 RKIQPGDKMAGRHGNKGVVSKINPCEDMPFLEDGQHVDIVLNPLGVPSRMNVGQILETHL 1138 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWAC G+G+KI L ++Y+ +G+I LR + ++ G E + +YDD+ + ++ EQ + Sbjct: 1139 GWACAGMGQKIGELYDEYRKSGEIEQLRGKVVEIYGDNLKGEPVKEYDDEGIAKLGEQLR 1198 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GV ++TPVFDGA E + ML +A++ SGQS L+DG TGE FDR VTVGYIYMLKL+H Sbjct: 1199 HGVSIATPVFDGAREPDVVDMLNIAEMKPSGQSTLFDGRTGEQFDRQVTVGYIYMLKLHH 1258 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1259 LVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1318 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 V GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L++ ++S + Sbjct: 1319 VAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELQDKEPRHSTNDD 1372 >gi|89071237|ref|ZP_01158416.1| DNA-directed RNA polymerase beta subunit [Oceanicola granulosus HTCC2516] gi|89043223|gb|EAR49453.1| DNA-directed RNA polymerase beta subunit [Oceanicola granulosus HTCC2516] Length = 1381 Score = 1717 bits (4447), Expect = 0.0, Method: Composition-based stats. Identities = 830/1370 (60%), Positives = 1066/1370 (77%), Gaps = 12/1370 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL P+ EG++ F+SV Sbjct: 1 MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLNSGDQPEPMDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LEFV YE + PK+DV++C RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETAVLEFVRYELERPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++ RIDRRRK+PVT+ L ALGMD E I++ +Y + Y Sbjct: 181 RIIPYRGSWLDFEFDAKDLVYARIDRRRKLPVTTLLYALGMDQEAIMNAYYNTVTYRFEK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + + G + + LVD TGE + ++G+K+T +K L ++G V L + Sbjct: 241 NKGWVTKFFPERVRGTRPAFDLVDAATGEVIAKAGEKVTPRQVKKLIDEGEVTELLVPHS 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA DI+N E G IY+EAGD + + +++++ + + DIP+L +D+ Sbjct: 301 HIAGKFVATDIINEENGAIYVEAGDELTIERDKEGEIIGGTVKDLLDAGVTDIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNT+ DKN +R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 VNVGPYMRNTMAQDKNMNRETALMDIYRVMRPGEPPTVDAASTLFDSLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +RKEDI++ IK LV+LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALDAEDTQRTLRKEDIVSCIKALVELRDGKGEIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V D +VT++V Y+SA EE +AQAN++LD+ G+F +LV R +G Sbjct: 601 VNKYGFIETPYRVVKDAQVTDEVHYMSATEEMRHTVAQANATLDDAGNFLNDLVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E L PRE +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP+V Sbjct: 661 EYTLAPRENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPYV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VA SGAAIVA+RAG+++QVDA RIV+R+ E L+P GVDIYR+ KFQRSN Sbjct: 721 GTGIEGKVALDSGAAIVARRAGVIDQVDAARIVVRATED-LEPGDPGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVGD V + ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGDTVGKGEVIADGPSTDIGELALGKNVIVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+V +DVFTSIHI+EFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PG Sbjct: 840 RIVKDDVFTSIHIDEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G GT+V+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDFGTIVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E L+RD+DDE ILDRNIY+RL +L G+ GP+G K + ++ Sbjct: 960 KDERALQIEREEVERLSRDRDDELAILDRNIYARLRTLLDGKTVAKGPRGIKAGATIDAE 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ PRS WWQ A+++E + +E+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLDSLPRSHWWQIALKEEADAQILEALNEQYEAQKRQLDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD VLNPLGVPSRM Sbjct: 1080 KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPEEDMPFLADGTPVDFVLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG +I + +Y+ +GD++P+R + G + E + D+ Sbjct: 1140 NVGQILETHMGWAARGLGIQIDEALQEYRRSGDLTPVREAMRLAYGDDVYDEGVESMDEQ 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 +L A GVP++TPVFDGA E ++ LR A DESGQS+L+DG TGE F R VTV Sbjct: 1200 LLLEAAGNVTRGVPIATPVFDGAKEADVDDALRRAGFDESGQSVLFDGRTGEQFSRKVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL++ Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNM 1369 >gi|86137185|ref|ZP_01055763.1| DNA-directed RNA polymerase beta subunit [Roseobacter sp. MED193] gi|85826509|gb|EAQ46706.1| DNA-directed RNA polymerase beta subunit [Roseobacter sp. MED193] Length = 1378 Score = 1717 bits (4447), Expect = 0.0, Method: Composition-based stats. Identities = 835/1379 (60%), Positives = 1072/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++D+P+LIEVQK+SYD FL +P+ EG++ F+SV Sbjct: 1 MAQTFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDSPEPLDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV Y F+ PK+DV++C+ RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETSVLEFVKYSFEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + YS Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYNTVNYSLDK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 D + G + + LVD +GE E+GKK+T +K + ++G + L + + Sbjct: 241 SRGWVTPFFPDRVRGTRPTFDLVDAASGEVFAEAGKKVTPRAVKKMIDEGAITNLLVPFE 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA+DI+N E G IY+EAGD + + +++E+ + I DIP+L +D+ Sbjct: 301 NIIGKFVAKDIINEENGAIYVEAGDELTMEYDKGGDIIGGTVKELMDAGITDIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNT+ DKN R AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 VNVGPYMRNTMAADKNMGRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +RKEDI++ IK LVDLR+G+G IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALDAEDTQRTLRKEDIVSCIKALVDLRDGRGGIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V +G+VT++V Y+SA EE +AQAN+SLDE+G FT +LV R +G Sbjct: 601 VNKYGFIETPYRVVNEGQVTDEVHYMSATEEMRHTVAQANASLDENGKFTNDLVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 DYTLAPSESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGAAI+AKR G+++QVDA RIVIR+ L+ +GVDIYR+ KFQRSN Sbjct: 721 GTGIEEVVARDSGAAIMAKRGGVIDQVDAQRIVIRATSD-LELGDAGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLV+VG EVR+ ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVRVGQEVRKGEVIADGPSTDIGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GT+V+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTIVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL +L G+ AV GPKG + + D Sbjct: 960 KDERALQIEREEVERLARDRDDELAILDRNIYARLRSMLLGKTAVKGPKGIRTGAAIDED 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 +S+ R QWW A+++E+ + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 ALSQLSRGQWWMIALEEEQDAKVVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL+DGTPVD LNPLGVPSRM Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLQDGTPVDFCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG ++ + +++ +GD++P+R ++ G + E ++D +D Sbjct: 1140 NVGQILETHMGWAARGLGIQVDDALQEFRRSGDLTPVRDAMKHAYGENVYEEGLADMSED 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 +L A GVP++TPVFDGA E +N L A D SGQS+LYDG TGE F RPVTV Sbjct: 1200 DLLEAAGNVTRGVPIATPVFDGAKEADVNDALVRAGFDTSGQSVLYDGRTGEQFARPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEEE 1378 >gi|114570352|ref|YP_757032.1| DNA-directed RNA polymerase subunit beta [Maricaulis maris MCS10] gi|122315780|sp|Q0ANP3|RPOB_MARMM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|114340814|gb|ABI66094.1| DNA-directed RNA polymerase subunit beta [Maricaulis maris MCS10] Length = 1357 Score = 1716 bits (4445), Expect = 0.0, Method: Composition-based stats. Identities = 858/1364 (62%), Positives = 1075/1364 (78%), Gaps = 9/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G+ F G R+RK FG+ PE + +P+LIEVQK+SY+HFLM + ER + G+QA FKSV Sbjct: 1 MGLSFTGKKRIRKSFGRIPETVAMPNLIEVQKSSYEHFLMKEVPAAERDDTGMQAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ F+ A+L+FVSYEF+PPKFDV++C RD+T+A PLK+ +RLIVFDVDE TGA+S+ Sbjct: 61 FPVKDFAERAVLDFVSYEFEPPKFDVEECQQRDMTFAAPLKVKMRLIVFDVDEETGARSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT GTFV+ G +R++VSQ+HRSPG+ FDHD+G+ SGK L+A Sbjct: 121 KDIKEQDVYMGDIPLMTDKGTFVVNGTERVIVSQMHRSPGVFFDHDRGKTHASGKYLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++H+R+DRRRK+P T+ L ALG+D EEILSTFY + Y Sbjct: 181 RIIPYRGSWLDFEFDAKDVVHMRLDRRRKLPATTLLYALGLDKEEILSTFYDTVTYKASK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W P + G K + LVD TG+ + +GKK+++ + G+ L ++ + Sbjct: 241 KGWTVPYV-KERWRGVKPARDLVDAKTGDIIAPAGKKISARAANKFADDGLAALLVSDEH 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNT 361 L G Y+A+D+VN ETGEI+ EAGD + E+ LE + + ++++ +L +D YIR T Sbjct: 300 LLGGYLADDMVNLETGEIFAEAGDEMSEEILETLKDTGVKELNLLDIDPATGVGPYIRAT 359 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L DKN R+ AL+DIYRVMRPG+ T AE+MF LFFDS++YDLS VGRVKMNMRL+ Sbjct: 360 LAADKNDSREQALVDIYRVMRPGEPPTPETAEAMFQGLFFDSERYDLSAVGRVKMNMRLD 419 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 LD PDD+R +RKEDI+A++K LV LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLR Sbjct: 420 LDAPDDMRTLRKEDILAVLKTLVGLRDGRGEIDDIDNLGNRRVRSVGELMENQYRIGLLR 479 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 MER+IKER+SSVDI++VMP DL+NAKP +AV EFF SSQLSQ + N LS +TH RRL Sbjct: 480 MERAIKERMSSVDIETVMPHDLVNAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRL 539 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL++FARVN YGFIE+P Sbjct: 540 SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIESP 599 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV +GK+T+ V YLSAM+E IAQAN+ + E G E V CR AG+ LVPRE + Sbjct: 600 YRKVENGKLTDQVDYLSAMQESRYSIAQANAHVTESGELDNEFVNCRVAGDVTLVPREDV 659 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++ID SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPL+KAEAP VGTGMES+VA+ Sbjct: 660 EYIDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKAEAPLVGTGMESIVAR 719 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGAAI A+R G++EQVDA RIVIR+ E LD + SGVDIYRL KFQRSNQ+TC+NQRP+ Sbjct: 720 DSGAAIAARRTGVIEQVDATRIVIRATED-LDAAKSGVDIYRLSKFQRSNQSTCINQRPI 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V+VGD+V DIIADGPSTDLG+LALGRN++VAFMPW+GYNFEDS+LISER+V +DVFTS Sbjct: 779 VRVGDQVHAGDIIADGPSTDLGELALGRNVVVAFMPWNGYNFEDSILISERIVRDDVFTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IH+EEFE+ ARDTKLGPEEITRDIPNV EE L+N+DE GI+ VGAEV GDILVGK+TPK Sbjct: 839 IHLEEFEIAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAVGAEVAAGDILVGKVTPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GESPMTPEEKLLRAIFGEKA DVRDTSLR+PSG +GTVV+VR+FNRHG+DK+ER+IS+ER Sbjct: 899 GESPMTPEEKLLRAIFGEKASDVRDTSLRMPSGATGTVVEVRVFNRHGVDKDERAISIER 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E+IE L +D+DDE IL+RNIY RL ++L G+ AVSGP+GF K +S D + E PRS W Sbjct: 959 EEIERLGKDRDDELAILERNIYQRLGDLLLGKTAVSGPRGFAKG-KVSQDALDETPRSGW 1017 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 W+ + DEK VE+L+ QY+ SK+ L+ RF++K++K+Q GD+MPPGV+++VKVFVA+K Sbjct: 1018 WRIGLDDEKAMAEVEALQKQYDDSKARLDRRFEDKVDKLQRGDEMPPGVMKMVKVFVAVK 1077 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG++S+I P EDMPFL +G VDIVLNPLGVPSRMNVGQI ETHL Sbjct: 1078 RKLQPGDKMAGRHGNKGVISKINPIEDMPFLANGEAVDIVLNPLGVPSRMNVGQILETHL 1137 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWAC GLGK++ + YK +G + LRS L++V E D + + Sbjct: 1138 GWACRGLGKQLGEAYDAYKRDGSTATLRSELDRVYEGDELPE-----TDSDIAELGLNLS 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E + L A D SGQS LYDG TGEPF R VTVG ++LKL+H Sbjct: 1193 NGVPIATPVFDGAREPDVAHWLTKAGFDPSGQSTLYDGQTGEPFRRKVTVGVKHLLKLHH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 V GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+N Sbjct: 1313 VAGRTKVYEAIVRGDDTFEAGVPESFNVLVKEMRSLGLNVELKN 1356 >gi|126734767|ref|ZP_01750513.1| DNA-directed RNA polymerase beta subunit [Roseobacter sp. CCS2] gi|126715322|gb|EBA12187.1| DNA-directed RNA polymerase beta subunit [Roseobacter sp. CCS2] Length = 1379 Score = 1716 bits (4444), Expect = 0.0, Method: Composition-based stats. Identities = 843/1381 (61%), Positives = 1079/1381 (78%), Gaps = 15/1381 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL + EG++ F+SV Sbjct: 1 MASTFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDSDTPLDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LEFV YE + PK+DV++C RD+TY+ PLK+TLRLIVF+VDE TGAKS+ Sbjct: 61 FPIKDFNETAVLEFVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFEVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ RIDRRRK+PVT+ L ALG D E I++ +Y + Y Sbjct: 181 RIIPYRGSWLDFEFDAKDLVFCRIDRRRKLPVTTLLYALGFDQEGIMNAYYNTVDYKLDK 240 Query: 243 DF--WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGIT 299 W + G + + LVD TGE + ++G+K+T +K L + G V L + Sbjct: 241 KGAAWTTKFFPE-RVRGTRPAHDLVDAKTGEVIAKAGEKVTPRSVKKLIDAGEVTELLVP 299 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYV 349 D + G +V+EDI+N ETG IY+EAGD + + +L E+ + ++ IP+L + Sbjct: 300 YDNIVGKFVSEDIINEETGAIYVEAGDELTVEVDKAGEVTGGTLTELVAAGVKTIPVLDI 359 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D+V AY+RNT+ DKN +R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS Sbjct: 360 DNVTVGAYMRNTMAADKNMNRETALMDIYRVMRPGEPPTVDSASALFDTLFFDSERYDLS 419 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 VGRVKMNMRL+LD D +R +RKEDI++ IK LV+LR+G+G +DDID+LGNRRVRSVGE Sbjct: 420 AVGRVKMNMRLDLDAEDTMRTLRKEDIVSCIKALVELRDGRGDVDDIDHLGNRRVRSVGE 479 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +++NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + Sbjct: 480 LMENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQT 539 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +F Sbjct: 540 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATF 599 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 ARVN YGFIETPYRKV DGKVT++V Y+SA EE +AQAN++++E+GSF ELV R Sbjct: 600 ARVNKYGFIETPYRKVTDGKVTDEVSYMSATEEMRHTVAQANANVNEEGSFNNELVSTRK 659 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 G+ L PRE +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP Sbjct: 660 NGDYTLSPRENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAP 719 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 VGTG+E VVA+ SGAAI+AKRAGI++QVDA RIVIR+ E L+ +GVDIYR+ KFQR Sbjct: 720 LVGTGIEEVVARDSGAAIMAKRAGIIDQVDAQRIVIRATED-LELGDAGVDIYRMRKFQR 778 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 SNQNTC+NQRPLVKVGD+V++ ++ADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LI Sbjct: 779 SNQNTCINQRPLVKVGDKVQKGQVVADGPSTDIGELALGKNVVVAFMPWNGYNYEDSILI 838 Query: 830 SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 SER+V +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV Sbjct: 839 SERIVRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVG 898 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 P DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G GTVV+VR+FNRHG Sbjct: 899 PADILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDFGTVVEVRVFNRHG 958 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 ++K+ER++ +ERE++E LARD+DDE VILDRNIY+RL +I+ G+ A GPKGFK +V++ Sbjct: 959 VEKDERALQIEREEVERLARDRDDEMVILDRNIYARLWDIIGGKKAAKGPKGFKSGSVVT 1018 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + +SE R QWWQ A+ DE + VE+L QYE K ++ RF++K+EK++ GDD+PPG Sbjct: 1019 EESVSELTRGQWWQLAMADEDDAKIVEALNEQYEIQKRAMDARFEDKVEKVRRGDDLPPG 1078 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V+++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPS Sbjct: 1079 VMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPS 1138 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYD 1189 RMNVGQI ETH+GWA GLG +I + +Y+ +GD++P+R ++ V G + E I+ D Sbjct: 1139 RMNVGQILETHMGWAARGLGIQIDEALGEYRRSGDLTPVRDAMKIVYGDNVYDEGIAGMD 1198 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 +D ++ A GVP++TPVFDGA E +N L A D SGQS+L+DG TGE F R V Sbjct: 1199 EDELVEAAGNVTGGVPIATPVFDGAKEADVNDALTRAGFDTSGQSVLFDGRTGEQFSRKV 1258 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TVG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1259 TVGVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1318 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1319 TLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEDE 1378 Query: 1370 N 1370 Sbjct: 1379 E 1379 >gi|84685445|ref|ZP_01013343.1| DNA-directed RNA polymerase beta subunit [Maritimibacter alkaliphilus HTCC2654] gi|84666602|gb|EAQ13074.1| DNA-directed RNA polymerase beta subunit [Rhodobacterales bacterium HTCC2654] Length = 1380 Score = 1716 bits (4443), Expect = 0.0, Method: Composition-based stats. Identities = 844/1381 (61%), Positives = 1068/1381 (77%), Gaps = 12/1381 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + G R+RK++GK E++++P+LIEVQKASYD FL P+ EG++ F+SV Sbjct: 1 MAQSYLGQKRLRKYYGKIREVLEMPNLIEVQKASYDLFLNSGDQPEPADGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+ F+ A LEFV YE + PK+DV++C RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPISDFNETATLEFVRYELEHPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + Y+ Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVDYTLEK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + + G + + +VD D+GE + E+GKK+T +K L ++G VK + + D Sbjct: 241 NKGWVTKFFPERIRGTRPNMDIVDADSGEILFEAGKKVTPRAVKKLIDEGTVKNILVPFD 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G YVA+DI+N ETG IY+EAGD + + S +E+ + I DIP+L +D+ Sbjct: 301 NIVGRYVAKDIINEETGAIYVEAGDELTLEYDKDGDLIGGSAKELIDAGITDIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN YIRNT+ DKN +R AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 VNVGPYIRNTVAADKNMNRDTALMDIYRVMRPGEPPTVEAASTLFDQLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRLNLD D R +R+EDIIA IK LV+LR+G+G +DDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLNLDAEDTQRTLRREDIIACIKALVELRDGRGEVDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V G+VT++V Y+SA EE +AQAN+SLDE G F E+V R +G Sbjct: 601 VNKYGFIETPYRVVKGGQVTDEVHYMSATEEMRHTVAQANASLDESGKFVNEMVNTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E L P + +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 EYTLAPVDSVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VA SGAAI A+RAG+++QVDA RIV+R+ DL+P GVDIYRL KFQRSN Sbjct: 721 GTGIEGKVAVDSGAAIQARRAGVIDQVDATRIVVRAT-ADLEPGDPGVDIYRLRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNT +NQRPLVKVG +V + ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTAINQRPLVKVGQDVEKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIAQDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL +++ G+ AV GPKG K +V+ Sbjct: 960 KDERALQIEREEVERLARDRDDELAILDRNIYARLRDMIEGKTAVKGPKGVKSGSVIDEA 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ E R QWWQ A++DE + VE+L QYE K LE RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLGELSRGQWWQLALEDEADAQMVEALNAQYEAQKRALEHRFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++SR++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG I + +YK +GD++P+R ++ G + E I D++ Sbjct: 1140 NVGQILETHMGWAARGLGLNIDEALGEYKRSGDLTPVRDAMKHAYGEDVYAEGIEGMDEE 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 ++ A GVP++TPVFDGA E +N L A D SGQS+L+DG TGE F R VTV Sbjct: 1200 RLIEAASNVTRGVPIATPVFDGAKEPEVNDALTRAGFDTSGQSVLFDGRTGEQFARKVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNS 1371 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L +S + Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDSEGEPD 1379 Query: 1372 A 1372 Sbjct: 1380 E 1380 >gi|146278576|ref|YP_001168735.1| DNA-directed RNA polymerase subunit beta [Rhodobacter sphaeroides ATCC 17025] gi|166229300|sp|A4WVL6|RPOB_RHOS5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|145556817|gb|ABP71430.1| DNA-directed RNA polymerase, beta subunit [Rhodobacter sphaeroides ATCC 17025] Length = 1377 Score = 1715 bits (4441), Expect = 0.0, Method: Composition-based stats. Identities = 838/1380 (60%), Positives = 1081/1380 (78%), Gaps = 14/1380 (1%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ V G R+R+++GK E++++P+LIEVQK+SYD FL P EG+Q F+ Sbjct: 1 MAQSYV--GQKRIRRYYGKIREVLEMPNLIEVQKSSYDLFLKSGEGPKAADGEGIQGVFQ 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI F+ A+LEFV YE + PK+DVD+C RD+TYA PLK+TLRLIVFDVDE TGA+ Sbjct: 59 SVFPIKDFNETAVLEFVKYELEKPKYDVDECQQRDMTYAAPLKVTLRLIVFDVDETTGAR 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 119 SVKDIKEQDVYMGDMPLMTANGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALGMD E I+ +Y + + Sbjct: 179 ACRIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGMDQEGIMDAYYDTVDFKY 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEK-GVKFLGIT 299 + + + + G + + LVD TGE ++++G+K T ++K + + L + Sbjct: 239 QKNRGWVTRFFPERVRGTRPTYDLVDAATGEVILKAGEKATPRMVKKWIDDAQITELLVP 298 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYV 349 D + G YVA DI+N ETGEI++EAGD + + +L+ + I DIP+L + Sbjct: 299 FDHIVGRYVARDIINEETGEIWVEAGDELTMEYDRDGEVKGGTLKLLLDQGITDIPVLDI 358 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D+VN YIRNT+ DKN R AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS Sbjct: 359 DNVNVGPYIRNTMAADKNMGRDTALMDIYRVMRPGEPPTVEAAAALFDTLFFDSERYDLS 418 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 VGRVKMNMRL+L PD R + ++DIIA IK L +LR+GKG IDDID+LGNRRVRSVGE Sbjct: 419 AVGRVKMNMRLDLGKPDTQRTLDRDDIIACIKALTELRDGKGEIDDIDHLGNRRVRSVGE 478 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +++NQYR+GLLRMER+IKER+SSV+ID++MPQDLINAKP +AV EFF SSQLSQ + Sbjct: 479 LMENQYRVGLLRMERAIKERMSSVEIDTIMPQDLINAKPAAAAVREFFGSSQLSQFMDQT 538 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +F Sbjct: 539 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGQNIGLINSLATF 598 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 ARVN YGFIETPYRKV +G+VT+DVVY+SA EE +AQAN++LDE+G F +L+ R Sbjct: 599 ARVNKYGFIETPYRKVIEGQVTDDVVYMSATEEMRHTVAQANATLDEEGRFVSDLISSRK 658 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 AGE +L P + ID ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+++AP Sbjct: 659 AGEFMLNPPDAIDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQSDAP 718 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 FVGTG+E+VVA+ SGAAI+A+RAG+++QVDA RIV+R+ E L+P GVDIYRL KF+R Sbjct: 719 FVGTGIEAVVARDSGAAIMARRAGVIDQVDATRIVVRATE-MLEPGEPGVDIYRLRKFKR 777 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 SNQ++C+NQRPLVKVGD V R +++ADGP TD+G+LALGRN++VAFMPW+GYN+EDS+LI Sbjct: 778 SNQSSCINQRPLVKVGDVVHRGEVVADGPCTDMGELALGRNVVVAFMPWNGYNYEDSILI 837 Query: 830 SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 SER++ +DV+TSIHIEE+EV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV Sbjct: 838 SERILRDDVYTSIHIEEYEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVQ 897 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 PGDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G GT+V+VR+FNRHG Sbjct: 898 PGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGAYGTIVEVRVFNRHG 957 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 +DK+ER++ +ERE++E LARD+DDE IL+RNIYSRL ++ G+ AV GPKG K + ++ Sbjct: 958 VDKDERALQIEREEVERLARDRDDELAILERNIYSRLKTLIMGKVAVKGPKGIKAGSEIN 1017 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 +L+S R QWWQ A+ +E + VE+L Q+E K L+ RF++K+EK++ GDD+PPG Sbjct: 1018 DELLSTLSRGQWWQLALGEEADAKEVEALHEQFEAQKRALDHRFEDKVEKVRRGDDLPPG 1077 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V+++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGT VD+VLNPLGVPS Sbjct: 1078 VMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPIEDMPFLADGTHVDLVLNPLGVPS 1137 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYD 1189 RMNVGQI ETH+GWA GLG +I + DY+ +GD++P++ + G ++ +D D Sbjct: 1138 RMNVGQILETHMGWAARGLGIQIDEALQDYRRSGDLTPVKEAMRLAYGDETYEGAFADRD 1197 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 D+ ++ +A + GVP++TPVFDGA E +N LR A D+SGQSI++DG TGE F RPV Sbjct: 1198 DEDLVEMASRVTKGVPIATPVFDGAKEPDVNDALRRAGFDQSGQSIVFDGRTGEQFARPV 1257 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TVG YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY Sbjct: 1258 TVGVKYMLKLHHLVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAY 1317 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 LQEMLT+KSDDV GRT++YESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1318 TLQEMLTVKSDDVAGRTKMYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDADEE 1377 >gi|254464810|ref|ZP_05078221.1| DNA-directed RNA polymerase, beta subunit [Rhodobacterales bacterium Y4I] gi|206685718|gb|EDZ46200.1| DNA-directed RNA polymerase, beta subunit [Rhodobacterales bacterium Y4I] Length = 1382 Score = 1713 bits (4437), Expect = 0.0, Method: Composition-based stats. Identities = 841/1379 (60%), Positives = 1073/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL A + EG++ F+SV Sbjct: 5 MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDAAEPLDGEGIKGVFQSV 64 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV Y F+ PK+DV++C+ RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 65 FPIKDFNETSVLEFVKYSFEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 124 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 125 KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 184 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y I + Sbjct: 185 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTISFKLEK 244 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + LVD TGE + E+GKK+T +K + E+G + L + D Sbjct: 245 SRGWVAPFFPERVRGTRPTYDLVDAATGEIICEAGKKVTPRAVKKMIEEGTITELLVPFD 304 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA+DI+N + G IY+EAGD + + SL+E+ + I DIP+L +D+ Sbjct: 305 HIVGKFVAKDIINEDNGAIYVEAGDELTLEYDKDGDLIGGSLKELLDAGITDIPVLDIDN 364 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNT+ DKN+ R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 365 VNVGPYMRNTMAQDKNRTRESALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV 424 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +RKEDI+A +K LVDLR+G+G IDDID+LGNRRVRSVGE++ Sbjct: 425 GRVKMNMRLALDAEDTQRTLRKEDIVACVKALVDLRDGRGDIDDIDHLGNRRVRSVGELM 484 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 485 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 544 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 545 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 604 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V DG+VT++V Y+SA EE +AQAN+SLDE+G F +LV R +G Sbjct: 605 VNKYGFIETPYRVVKDGQVTDEVHYMSATEEMRHTVAQANASLDENGKFINDLVSTRQSG 664 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 665 DYTLAPNESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 724 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VA SGAAI AKRAGI++QVDA RIVIR+ E L+ +GVDIYR+ KFQRSN Sbjct: 725 GTGIEEKVAIDSGAAIQAKRAGIIDQVDAQRIVIRATED-LELGDAGVDIYRMRKFQRSN 783 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVGD V++ ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 784 QNTCINQRPLVKVGDTVQKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 843 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTS+HIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 844 RIARDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 903 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 904 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 963 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ AV GPKG + T ++ D Sbjct: 964 KDERALQIEREEVERLARDRDDELAILDRNIYARLRGMILGKVAVKGPKGVRAGTEITED 1023 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ R QWW A++DE+ + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1024 LLDSLSRGQWWMLALEDEQDAQVVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVM 1083 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1084 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1143 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG K+ + +Y+ +GD++P+R + G + E I++ D+D Sbjct: 1144 NVGQILETHMGWAARGLGIKVDDALQEYRRSGDLTPVREAMHHAYGDDVYDEGIANMDED 1203 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 S++ A GVP++TPVFDGA E +N L+ A D SGQSIL+DG TGE F RPVTV Sbjct: 1204 SLIEAAGNVTRGVPIATPVFDGAKEGDVNDALKRAGFDTSGQSILFDGRTGEQFARPVTV 1263 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1264 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1323 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1324 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVEE 1382 >gi|36333371|gb|AAP75743.1| RNA polymerase beta subunit [Bosea massiliensis] Length = 1370 Score = 1713 bits (4436), Expect = 0.0, Method: Composition-based stats. Identities = 881/1365 (64%), Positives = 1095/1365 (80%), Gaps = 15/1365 (1%) Query: 9 GLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF 68 G RVRKFFGK E+ +P+LIEVQKASYD FLM++ R +EGLQ+ FKSVFPI F Sbjct: 7 GRRRVRKFFGKLKEVAQMPNLIEVQKASYDQFLMVDEPKGGRGDEGLQSVFKSVFPIGDF 66 Query: 69 SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 SGA++LEFV Y F+PPK+DVD+C R +T++ PLK+TLRLIVFD+D T AKS+KDIKEQ Sbjct: 67 SGASLLEFVKYTFEPPKYDVDECRQRGMTFSAPLKVTLRLIVFDIDPDTQAKSVKDIKEQ 126 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A RIIP + Sbjct: 127 DVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARIIPYR 186 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+DIEFD+KDI++ RIDR+RK+PVTS L ALGMD EEILS FY I Y++ W P Sbjct: 187 GSWLDIEFDAKDIVYARIDRKRKIPVTSLLFALGMDGEEILSRFYNTITYTRDAKGWRVP 246 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 A M G K + L+D DTGE V+E+GKKL + + L EKG+KFL T + L G Y+ Sbjct: 247 YDAE-RMKGFKATVDLIDADTGEVVVEAGKKLVARTARQLAEKGLKFLRATDEDLVGQYI 305 Query: 309 AEDIVNGETGEIYIEAGDVID----------EKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 AED+V+ +TGE++ EAG+ + + +L E+ + +IP+L +D + YI Sbjct: 306 AEDLVDFQTGEVHAEAGEELTMSVDAKTGEAKGNLVELINKGYTEIPVLDIDHITVGPYI 365 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL DKN R++AL DIYRVMRPG+ T AE+MF LFFD+++YDLS VGRVKMNM Sbjct: 366 RNTLAVDKNSRREEALFDIYRVMRPGEPPTLETAENMFQSLFFDAERYDLSAVGRVKMNM 425 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 RL+LD D VR +RKEDI A++K LVDLR+GKG IDDID+LGNRRVRSVGE+++NQYRLG Sbjct: 426 RLDLDAEDTVRILRKEDIFAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLG 485 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LLRMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH Sbjct: 486 LLRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHK 545 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFI Sbjct: 546 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFI 605 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E+PYR++ DG+ T++++YLSAMEE +AQAN+++D+DG T++L+ CR AGE I+ P Sbjct: 606 ESPYRRIRDGRQTDEIIYLSAMEEAKYNVAQANAAVDKDGRLTDDLIVCRRAGEVIVTPV 665 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +K+DF D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++A+APFVGTGME+V Sbjct: 666 DKVDFQDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAV 725 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+RAGIV+QVDA RIVIR+ + DP+ GVDIYRL KFQRSNQ+TC+ Q Sbjct: 726 VARDSGAAIAARRAGIVDQVDATRIVIRASDEM-DPTKPGVDIYRLQKFQRSNQSTCITQ 784 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLV+VGD +++ DI+ADGPST+ G+LALGRN+LVAFMPW+GYNFEDS+L+SE++VSEDV Sbjct: 785 RPLVRVGDVIKKGDIVADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSEKIVSEDV 844 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 845 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVAAGDILVGKI 904 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+ + Sbjct: 905 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERAQA 964 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDEQ ILDRN ++RL +IL G+ ++GPKGFKK TV++ + +SE+PR Sbjct: 965 IEREEIERLAKDRDDEQAILDRNTFARLADILTGKVGLAGPKGFKKDTVITREGMSEFPR 1024 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA D+ + +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1025 SQWWLFATADDALMTEIEAMRKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFV 1084 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VSRI+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI E Sbjct: 1085 AVKRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE 1144 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWA GLGK+I + ++ Y+ DI LR+ + V E I+ D++ ++ + + Sbjct: 1145 THLGWAAAGLGKQISAALDAYRKGHDIKALRASFDAVYEDN---EIIASMDENELVEMGQ 1201 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 + GVP++TPVF+GA E I +L A L SGQS LYDG TGEPFDR VTVGYIYMLK Sbjct: 1202 NLRRGVPIATPVFNGAKEADIERLLEQAGLHSSGQSTLYDGRTGEPFDRKVTVGYIYMLK 1261 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1262 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1321 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 SDDV GRT+VYESIV G D FE G PES VLVKEM++LGL++ L Sbjct: 1322 SDDVAGRTKVYESIVRGEDNFEAGIPESVTVLVKEMRSLGLNVYL 1366 >gi|89095345|ref|ZP_01168262.1| DNA-directed RNA polymerase beta subunit [Oceanospirillum sp. MED92] gi|89080387|gb|EAR59642.1| DNA-directed RNA polymerase beta subunit [Oceanospirillum sp. MED92] Length = 1366 Score = 1712 bits (4434), Expect = 0.0, Method: Composition-based stats. Identities = 714/1371 (52%), Positives = 997/1371 (72%), Gaps = 12/1371 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q SY FL + +R + GL AAF SV Sbjct: 1 MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYKKFLQTGVEAADRLDAGLHAAFNSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C R +TYA PL++ +RL+++D + K++ Sbjct: 61 FPIVSYSGNASLEYVGYRLGEPVFDVKECQIRGITYAAPLRVKVRLVIYDR--ESSNKAV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFV+ G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEMPLMTENGTFVVNGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG ++EEIL F+ ++ Sbjct: 179 RVIPYRGSWLDFEFDPKDSLFVRIDRRRKLPATILLRALGYEAEEILDIFFDNTSWNLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L A D + G +S + D + G ++E+G+++T ++ + + ++ L + + Sbjct: 239 DAINMQLIA-DRLRGETLSFEVKDPE-GNVIVEAGRRITPRHIRQMAKANMEQLEVPMEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A+D+V+ TGE+ I E+ +E++ + I++ LY + ++ +I +TL Sbjct: 297 VAGKAIAKDVVDPSTGELICGCNAEITEELIEQLRAAGIKEFETLYTNDLDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +++ +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL Sbjct: 357 RNDPTRNQLEALVEIYRMMRPGEPPTKESAEALFENLFFTEERYDLSAVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + K+DI++++K L+D+RNGKGT+DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 417 DEVTGSGVLDKDDILSVMKTLIDIRNGKGTVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + D++MPQDLINAKPV +A+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVRERLSMAESDNLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR N YGF+ETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATFARTNDYGFLETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V D KVT+++ YLSA+EE IAQA++++D++G +++V R E ++ EK+ Sbjct: 597 RRVVDSKVTDELDYLSAIEENTFVIAQASATMDDEGRLVDDMVTVRHLNETTVMAPEKVQ 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA+ Sbjct: 657 YMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERNVAQD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G++E VDA RIV+R + ++ +GVDIY L K+ RSNQNTC+NQR +V Sbjct: 717 SGVCVVARRGGLIESVDASRIVVRVNDNEVTAGDAGVDIYNLTKYTRSNQNTCINQRSIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+ D++ADGPS D+G+LALG+NM +AFMPW+GYNFEDS+LISER+V ED FT+I Sbjct: 777 NPGDIVKPGDVMADGPSVDMGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGSEEITSDIPNVGESALAKLDEAGIVHIGAEVGPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ES +TPEEKLLRAIFGEKA DV+DTSLRV +G G V+DV++F R G+ K+ER++S+E+ Sbjct: 897 ESQLTPEEKLLRAIFGEKASDVKDTSLRVKTGTVGKVIDVQVFTRDGVQKDERALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ + +D ++E I+++ + RL ++L G A G G KK +S++ +++ +S W+ Sbjct: 957 ELDAIRKDLNEELRIVEQATFERLEKVLVGLKADGG-AGLKKGEEISAEFLADLNKSDWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 V DE +E + Q E K L+ RF++K K+Q GDD+ PGVL++VKV+VA KR Sbjct: 1016 NIRVSDENAAEQLELAQKQLEDRKESLDKRFEDKKSKLQTGDDLAPGVLKIVKVYVATKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ ++G PVDIVLNPLGVPSRMNVGQI ETH+G Sbjct: 1076 RIQPGDKMAGRHGNKGVISVIMPVEDMPYDQNGEPVDIVLNPLGVPSRMNVGQILETHMG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGD-ISPLRSFLEKVIGTG------SHTEKISDYDDDSVLR 1195 A GLG++I ++ + + + +R FL+K+ S TE + + DD ++ Sbjct: 1136 MAAKGLGRRINEMLEQERERVETVKEVRGFLDKIYNADLGAGMNSRTEDLDSFTDDEIME 1195 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 +A+ GVP++TP FDGA E + ++LR+A LD+SGQ+ L+DG TG+ FDRPVTVGY+Y Sbjct: 1196 LAKNLCGGVPLATPAFDGAKEVELKTLLRLAGLDDSGQTTLFDGRTGDQFDRPVTVGYMY 1255 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEML Sbjct: 1256 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1315 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 T+KSDDV GRT++Y++IV G+ E G PESFNVL+KE+++LG+ I+LE+ Sbjct: 1316 TVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIELESE 1366 >gi|77462251|ref|YP_351755.1| DNA-directed RNA polymerase subunit beta [Rhodobacter sphaeroides 2.4.1] gi|126461113|ref|YP_001042227.1| DNA-directed RNA polymerase subunit beta [Rhodobacter sphaeroides ATCC 17029] gi|126461127|ref|YP_001042241.1| DNA-directed RNA polymerase subunit beta [Rhodobacter sphaeroides ATCC 17029] gi|221638105|ref|YP_002524367.1| DNA-directed RNA polymerase subunit beta [Rhodobacter sphaeroides KD131] gi|88909635|sp|Q3J5T0|RPOB_RHOS4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158513428|sp|A3PGI9|RPOB_RHOS1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765301|sp|B9KL83|RPOB_RHOSK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|77386669|gb|ABA77854.1| DNA-directed RNA polymerase, beta subunit [Rhodobacter sphaeroides 2.4.1] gi|126102777|gb|ABN75455.1| DNA-directed RNA polymerase, beta subunit [Rhodobacter sphaeroides ATCC 17029] gi|126102791|gb|ABN75469.1| DNA-directed RNA polymerase, beta subunit [Rhodobacter sphaeroides ATCC 17029] gi|221158886|gb|ACL99865.1| DNA-directed RNA polymerase subunit beta [Rhodobacter sphaeroides KD131] Length = 1377 Score = 1712 bits (4434), Expect = 0.0, Method: Composition-based stats. Identities = 839/1380 (60%), Positives = 1079/1380 (78%), Gaps = 14/1380 (1%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ V G R+R+++GK E++++P+LIEVQK+SYD FL P EG+Q F+ Sbjct: 1 MAQSYV--GQKRIRRYYGKIREVLEMPNLIEVQKSSYDLFLKSGDGPKAADGEGIQGVFQ 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI F+ A+LEFV YE + PK+DVD+C RD+TYA PLK+TLRLIVFDVDE TGA+ Sbjct: 59 SVFPIKDFNETAVLEFVKYELEKPKYDVDECQQRDMTYAAPLKVTLRLIVFDVDETTGAR 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 119 SVKDIKEQDVYMGDMPLMTANGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALGMD E I+ +Y + + Sbjct: 179 ACRIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGMDQEGIMDAYYETVNFKH 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSL-KEKGVKFLGIT 299 + + + + G + + LVD TGE ++++G+K T ++K E + L + Sbjct: 239 QKNRGWVTRFFPERVRGTRPTYDLVDAATGEVILKAGEKATPRMVKKWIDEAQITELLVP 298 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYV 349 D + G YVA+DI+N ETGEI++EAGD + + +L+ + I DIP+L + Sbjct: 299 FDHIVGRYVAQDIINEETGEIWVEAGDELTMEYDRDGEVKGGTLKLLLDQGITDIPVLDI 358 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D+VN YIRNT+ DKN R AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS Sbjct: 359 DNVNVGPYIRNTMAADKNMGRDTALMDIYRVMRPGEPPTVEAASNLFDTLFFDSERYDLS 418 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 VGRVKMNMRL+L PD R + ++DIIA IK L +LR+GKG IDDID+LGNRRVRSVGE Sbjct: 419 AVGRVKMNMRLDLGKPDTQRTLDRDDIIACIKALTELRDGKGEIDDIDHLGNRRVRSVGE 478 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +++NQYR+GLLRMER+IKER+SSV+ID++MPQDLINAKP +AV EFF SSQLSQ + Sbjct: 479 LMENQYRVGLLRMERAIKERMSSVEIDTIMPQDLINAKPAAAAVREFFGSSQLSQFMDQT 538 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +F Sbjct: 539 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGQNIGLINSLATF 598 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 ARVN YGFIETPYRKV +G VT+DVVY+SA EE +AQAN+ LDE+G F +L+ R Sbjct: 599 ARVNKYGFIETPYRKVVEGAVTDDVVYMSATEEMRHTVAQANAQLDEEGRFVSDLISSRK 658 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 AGE +L P + ID ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+++AP Sbjct: 659 AGEFMLNPPDAIDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQSDAP 718 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 FVGTG+E+VVA+ SGAAI+A+RAG+++QVDA RIV+R+ E L+P GVDIYRL KF+R Sbjct: 719 FVGTGIEAVVARDSGAAIMARRAGVIDQVDATRIVVRATE-MLEPGEPGVDIYRLRKFKR 777 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 SNQ++C+NQRPLVKVGD V R +++ADGP TD+G+LALGRN++VAFMPW+GYN+EDS+LI Sbjct: 778 SNQSSCINQRPLVKVGDVVHRGEVVADGPCTDMGELALGRNVIVAFMPWNGYNYEDSILI 837 Query: 830 SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 SER++ +DV+TSIHIEE+EV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV Sbjct: 838 SERILRDDVYTSIHIEEYEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVQ 897 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 PGDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G GT+V+VR+FNRHG Sbjct: 898 PGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGAYGTIVEVRVFNRHG 957 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 +DK+ER++ +ERE++E LARD+DDE IL+RNIYSRL ++ G+ AV GPKG + + ++ Sbjct: 958 VDKDERALQIEREEVERLARDRDDELAILERNIYSRLRTLIMGKTAVKGPKGIRAGSEIN 1017 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 DL+S R QWWQ A+ +E + VE+L Q+E K L+ RF++K+EK++ GDD+PPG Sbjct: 1018 EDLLSTLSRGQWWQLALGEEADAKEVEALHEQFEAQKRALDHRFEDKVEKVRRGDDLPPG 1077 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V+++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGT VD+VLNPLGVPS Sbjct: 1078 VMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPIEDMPFLADGTHVDLVLNPLGVPS 1137 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYD 1189 RMNVGQI ETH+GWA GLG KI + DY+ +GD++P++ + G ++ D + Sbjct: 1138 RMNVGQILETHMGWAARGLGIKIDEALQDYRRSGDLTPVKEAMRLAYGDETYEGAFGDRE 1197 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 D+ ++ +A + GVP++TPVFDGA E +N LR A D+SGQSI++DG TGE F RPV Sbjct: 1198 DEDLVEMAGRVTKGVPIATPVFDGAKEPDVNDALRRAGFDQSGQSIVFDGRTGEQFARPV 1257 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TVG YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY Sbjct: 1258 TVGVKYMLKLHHLVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAY 1317 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 LQEMLT+KSDDV GRT++YESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1318 TLQEMLTVKSDDVAGRTKMYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDADEE 1377 >gi|88812764|ref|ZP_01128010.1| DNA-directed RNA polymerase, beta subunit [Nitrococcus mobilis Nb-231] gi|88790002|gb|EAR21123.1| DNA-directed RNA polymerase, beta subunit [Nitrococcus mobilis Nb-231] Length = 1354 Score = 1712 bits (4434), Expect = 0.0, Method: Composition-based stats. Identities = 729/1364 (53%), Positives = 989/1364 (72%), Gaps = 10/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK +I+D+P L+ Q SY FL + ++R GL AFKSV Sbjct: 1 MDYSFTEKKRIRKDFGKQSKILDVPYLLATQIESYREFLQFDKRVEDRAEIGLHMAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+++SG+A+LE+VSY P FDV +C R TYA PL++ +RL+++D D T + Sbjct: 61 FPISSYSGSAVLEYVSYRIGEPPFDVKECQLRGQTYAAPLRVRVRLVIYDKDAST----V 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG+LPLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ S KLL++ Sbjct: 117 KDIKEQEVYMGELPLMTRNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSKKLLFSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD I VRIDRRRK+P T L ALG D+E+IL F+ K + R Sbjct: 177 RVIPYRGSWLDFEFDPKDAIFVRIDRRRKLPATILLRALGYDNEQILDRFFEKNTFHIRK 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + D ++ESG+++T+ ++ L+ G+ L ++ D Sbjct: 237 DKAVLELIPERL-RGETASFDIHIDDV--LLVESGQRITARHIRQLERGGLTELDVSDDY 293 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+V+ +GEI A + + ++ I + I++I LYV+ ++ AYI TL Sbjct: 294 LTGKILAHDVVDKSSGEILATANTELTGELVQAIRDAGIKNIETLYVNDLDRGAYISTTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N+R+ Sbjct: 354 RGDPTTTQLEALVEIYRMMRPGEPPTREAAENLFQHLFFSEDRYDLSPVGRMKFNLRVGR 413 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + EDI+ ++ L+++RNGKG +DDID+LGNRRVR VGEM +N +R+GL+R+ Sbjct: 414 QEVTGSGTLSNEDILDVLHELINIRNGKGQVDDIDHLGNRRVRCVGEMAENVFRVGLVRV 473 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + + ++PQ+LINAKPV +A+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 474 ERAVRERLSLAESEGLIPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 533 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGF+ETPY Sbjct: 534 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNRYGFLETPY 593 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG+VT++V YLSA+EE IAQAN+ + EDG ++L+ CR E + E++ Sbjct: 594 RKVVDGRVTSEVEYLSAIEEGRFVIAQANARVSEDGRLLDDLISCRFQNEFGMATPERVQ 653 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +PKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME VA Sbjct: 654 YMDVAPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERAVAID 713 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG ++A+R G VEQVDA RIV+R + + P GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 714 SGVTVIAERGGAVEQVDAARIVVRVNDEEAVPGEPGVDIYNLTKYTRSNQNTCINQRPLV 773 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + G++V R D++ADGPSTD+G+LALG+NMLVAFMPW+GYNFEDS+LISER+V ED +T+I Sbjct: 774 RPGEQVVRGDVLADGPSTDMGELALGQNMLVAFMPWNGYNFEDSILISERVVQEDRYTTI 833 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE +ARDTKLG EE+T DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 834 HIEELTCVARDTKLGSEEVTADIPNVGESALSKLDESGIVYIGAEVKAGDILVGKVTPKG 893 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G+ GTV+DV++F R G+ K++R++S+E Sbjct: 894 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGMDGTVIDVQVFTRDGVKKDQRALSIEAG 953 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ + +D +D+ I + + ++RL +L G+ GP G + +S ++ R +W+ Sbjct: 954 QLADVRKDLNDQYRIFEDDAFTRLERLLEGKAVAGGPGGLRSGAEVSRAYLAGVERERWF 1013 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++DE+V + +E+++ Q + + I + R++ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1014 EIRMRDEEVNQQLEAVQSQLKAQREIFDSRYEEKKAKITAGDDLAPGVLKMVKVYLAVKR 1073 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++S I+P EDMP+LKDGTPVDIVLNPLGVPSRMNVGQ+ ETHLG Sbjct: 1074 RVQPGDKMAGRHGNKGVISTIVPVEDMPYLKDGTPVDIVLNPLGVPSRMNVGQVLETHLG 1133 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA LG+KI L++ + +IS L+ FL+++ + E + + + +A+ +S Sbjct: 1134 WASKALGRKIADLLDTH---TEISELQGFLQQIYNSSGREEDLDSFSSQQFIELADNLRS 1190 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E I +MLR+A L ESG++ILYDG TGE FDRPVT+GY+YMLKLNH+ Sbjct: 1191 GVPMATPVFDGAHENEIKAMLRLAGLPESGKAILYDGRTGEAFDRPVTIGYMYMLKLNHL 1250 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DKV+ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1251 VDDKVHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1310 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LE Sbjct: 1311 SGRTKMYKNIVDGDHRMEAGMPESFNVLVKEIRSLGIDIELEQD 1354 >gi|149203670|ref|ZP_01880639.1| DNA-directed RNA polymerase subunit beta [Roseovarius sp. TM1035] gi|149142787|gb|EDM30829.1| DNA-directed RNA polymerase subunit beta [Roseovarius sp. TM1035] Length = 1378 Score = 1711 bits (4432), Expect = 0.0, Method: Composition-based stats. Identities = 836/1379 (60%), Positives = 1076/1379 (78%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+R+++GK E++++P+LIEVQK+SYD FL P + EG++ F+SV Sbjct: 1 MAQSFLGQKRLRRYYGKIREVLEMPNLIEVQKSSYDLFLKSGDQPQPQDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFVSYE + PK+DVD+C+ RD+TYA PLK+ LRLIVFD+DE TGAKS+ Sbjct: 61 FPIKDFNETSVLEFVSYELEKPKYDVDECMQRDMTYAAPLKVKLRLIVFDIDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ C Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFTC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L +LG+D E I++ +Y + Y + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYSLGLDQEGIMNAYYDTVDYKLKK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + L+D +TGE + E+ KK+T +K L ++G V L + + Sbjct: 241 KKGWVTKFFPERVRGTRPTYDLIDANTGEVIFEASKKITPRAVKQLIDEGNVTELLVPFE 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA DI++ ETG IY+EAGD + + +L+++ + I DIP+L +D Sbjct: 301 HIVGKFVARDIIDEETGAIYVEAGDELTLEYGKDGEISGGTLQDLLDAGITDIPVLDIDG 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 +N AYIRNT+ DKN +R+ AL+DIYRVMRPG+ T + ++F+ LFFD+++YDLS V Sbjct: 361 INVGAYIRNTMAADKNMNRESALMDIYRVMRPGEPPTEEASAALFDTLFFDAERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRLNLD PD R + ++DI+A +K LV+LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLNLDKPDTQRTLDRDDIVACVKALVELRDGKGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYRKV DG+VT++V Y+SA EE +AQAN++LDE G F +LV R +G Sbjct: 601 VNKYGFIETPYRKVIDGQVTDEVQYMSATEEMRHTVAQANANLDEGGRFVNDLVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E +L PRE +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVP L+AEAP V Sbjct: 661 EYMLAPRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPTLRAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGAAI+AKRAG+++QVDA RIVIR+ DL+ GVDIYR+ KFQRSN Sbjct: 721 GTGIEGVVARDSGAAIMAKRAGVIDQVDAQRIVIRAT-ADLEIGDPGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QN+C+NQ+PLVKVGD V++ ++IADGP TD+G+LALG+N++ AFMPW+GYN+EDS+LISE Sbjct: 780 QNSCINQQPLVKVGDTVQKGEVIADGPCTDMGELALGKNVITAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+V +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIVRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ AV GPKG K ++ ++ + Sbjct: 960 KDERALQIEREEVERLARDRDDELAILDRNIYARLRTLIMGKVAVKGPKGVKANSDITEE 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+S + QWWQ A++DE + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLSTLTKGQWWQLALKDEADAKIVEALHDQYEAQKRTLDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG+VS+++P EDMPFL DGTPVDI LNPLGVPSRM Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVVSKVIPIEDMPFLADGTPVDICLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA LG KI + DY+ +GD++P+R + G + E I D+ Sbjct: 1140 NVGQILETHMGWAARSLGLKIDEALQDYRRSGDLTPVREAMRIAYGDDVYAEGIESMDET 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 +++ A SGVP++TPVFDGA E +N LR A D SGQS+L+DG TGE F RPVTV Sbjct: 1200 TLIESAGTVTSGVPIATPVFDGAKEADVNDALRRAGFDTSGQSVLFDGRTGEQFSRPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGIPESFNVLVKEVRGLGLNMELLDAEEDE 1378 >gi|56698330|ref|YP_168703.1| DNA-directed RNA polymerase subunit beta [Ruegeria pomeroyi DSS-3] gi|81348897|sp|Q5LMQ5|RPOB_SILPO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|56680067|gb|AAV96733.1| DNA-directed RNA polymerase, beta subunit [Ruegeria pomeroyi DSS-3] Length = 1378 Score = 1711 bits (4431), Expect = 0.0, Method: Composition-based stats. Identities = 836/1379 (60%), Positives = 1068/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL AP EG+ F+SV Sbjct: 1 MAQTFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLNSGDAPQPLDGEGIMGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV YE + PK+DV++C+ RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETSVLEFVKYELEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ ++ + Y Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYFKTVSYRLEK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + L+D +GE + E+GKK+T +K L E+G V L + D Sbjct: 241 KRGWVTPFFPERVRGTRPTYDLIDAASGEVIAEAGKKVTPRAVKKLIEEGSVTDLLVPFD 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G + A+DI+N ETG IY+EAGD + + +++E+ + + +IP+L +D+ Sbjct: 301 HIVGKFAAKDIINEETGAIYVEAGDELTLEYDKDGDLIGGTVKELIDNGVTNIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 +N YIRNT+ DKN +R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 INVGPYIRNTMAQDKNMNRETALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL+LD D R +R+EDIIA IK LV+LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLDLDAADTQRTLRREDIIACIKALVELRDGKGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V G+VT++V Y+SA EE +AQAN++LDE+G F ELV R AG Sbjct: 601 VNKYGFIETPYRVVKGGQVTDEVHYMSATEEMRHTVAQANATLDENGKFVNELVNTRQAG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 DYTLAPMESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VA SGAAI AKRAGI++Q+DA RIVIR+ E L+ +GVDIYR+ KFQRSN Sbjct: 721 GTGIEEKVAIDSGAAIQAKRAGIIDQIDAQRIVIRATED-LELGDAGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVG +V + ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGQQVSKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PG Sbjct: 840 RIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVQPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG+D Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVD 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ AV GPKG K + ++ + Sbjct: 960 KDERALQIEREEVERLARDRDDELAILDRNIYARLKSLILGKTAVKGPKGIKPGSEITEE 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ R QWW A++ E+ + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLETLTRGQWWMLALEGEQDAQIVEALNEQYELQKRALDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG + + +Y+ +GD++P+R ++ G + E IS D+D Sbjct: 1140 NVGQILETHMGWAARGLGLNVDEALQEYRRSGDLTPVRDAMKHAYGEDVYAEGISGMDED 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 +++ A GVP++TPVFDGA E +N L A D SGQS+L+DG TGE F RPVTV Sbjct: 1200 TLVEAAGNVTRGVPIATPVFDGAKEADVNDALTRAGFDTSGQSVLFDGRTGEQFARPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGIPESFNVLVKEVRGLGLNMELLDAEVEE 1378 >gi|126737165|ref|ZP_01752900.1| DNA-directed RNA polymerase subunit beta [Roseobacter sp. SK209-2-6] gi|126721750|gb|EBA18453.1| DNA-directed RNA polymerase subunit beta [Roseobacter sp. SK209-2-6] Length = 1377 Score = 1711 bits (4431), Expect = 0.0, Method: Composition-based stats. Identities = 835/1378 (60%), Positives = 1073/1378 (77%), Gaps = 12/1378 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++D+P+LIEVQK+SYD FL + + EG++ F+SV Sbjct: 1 MAQTFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDSVEPLDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV Y F+ PK+DV++C+ RD+TY+ PLK+TLRLIVFD+DE TGAKS+ Sbjct: 61 FPIKDFNETSVLEFVKYAFEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDIDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI++ RIDRRRK+PVT+ L ALG+D E I+ +Y + + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVYARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVNFKLEK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 D + G + + LVD TGE E+GKK+T +K + ++G + L + D Sbjct: 241 SRGWVTPFFPDRVRGTRPTYDLVDAATGEIFAEAGKKVTPRAVKKMIDEGAITELLVPFD 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKS----------LEEIFHSEIRDIPILYVDS 351 + G YV++DI+N E G IY+EAGD + + L+E+ + I +IP+L +D+ Sbjct: 301 HIVGKYVSKDIINEENGAIYVEAGDELTLEHDKDGELIGGSLKELMDAGITEIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNT+ DKN R+ AL+DIYRVMRPG+ T A S+F+ LFFDS++YDLS V Sbjct: 361 VNVGPYMRNTMAADKNMGRETALMDIYRVMRPGEPPTVEAASSLFDTLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +RKEDI+A IK LV+LR+GKG +DDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALDAEDTQRTLRKEDIVACIKALVELRDGKGDVDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V +G+VT++V Y+SA EE +AQAN+SLDE+G F +LV R +G Sbjct: 601 VNKYGFIETPYRVVNEGQVTDEVHYMSATEEMRHTVAQANASLDENGKFKNDLVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 DYTLAPSESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGAAI+AKR GI++QVDA RIVIR+ L+ +GVDIYR+ KFQRSN Sbjct: 721 GTGIEEVVARDSGAAIMAKRGGIIDQVDAQRIVIRATSD-LELGDAGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVG EVR+ ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGQEVRKGEVIADGPSTDIGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GT+V+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTIVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ AV GPKG + ++ D Sbjct: 960 KDERALQIEREEVERLARDRDDELTILDRNIYARLKGMILGKTAVKGPKGVRSGVEITED 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L++ R QWW A++DE+ + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLASLSRGQWWMLALEDEQDAQVVEALNQQYEAQKRALDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG ++ + +Y+ +GD++P+R ++ G + E ++D ++ Sbjct: 1140 NVGQILETHMGWAARGLGIQVDDALQEYRRSGDLTPVRDAMQHAYGENVYEEGLADMSEE 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 +L A GVP++TPVFDGA E+ +N+ L A D+SGQSIL+DG TGE F RPVTV Sbjct: 1200 DLLEAAGNVTRGVPIATPVFDGAKEDDVNNALVRAGFDQSGQSILFDGRTGEQFARPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEE 1377 >gi|15599466|ref|NP_252960.1| DNA-directed RNA polymerase subunit beta [Pseudomonas aeruginosa PAO1] gi|12230977|sp|Q51561|RPOB_PSEAE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|9950488|gb|AAG07658.1|AE004842_7 DNA-directed RNA polymerase beta chain [Pseudomonas aeruginosa PAO1] Length = 1357 Score = 1710 bits (4428), Expect = 0.0, Method: Composition-based stats. Identities = 725/1365 (53%), Positives = 985/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL ++ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKEQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDR--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTF+I G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EEIL+ FY V+ +G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEILNAFYATNVFHIKG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + D +G+ ++E G+++T+ + L++ GV L + D Sbjct: 239 ETLNLELVPQRL-RGEVASIDIKDG-SGKVIVEQGRRITARHINQLEKAGVSQLEVPFDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+ IV+ TGEI E + L ++ +++ I LY + ++ +I +TL Sbjct: 297 LIGRTIAKAIVHPATGEIIAECNTELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++F LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDNTSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDII ++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGPGVLSKEDIIDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V D VT+++V+LSA+EE + IAQA+++L+E G +ELV R E + E + Sbjct: 597 RVVKDSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA R+V+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V R DI+ADGPSTD+G+LALG+NM VAFMPW+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDVVARGDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKM 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G A GP KK T ++ D + R QW+ Sbjct: 957 QLDQIRKDLNEEFRIVEGATFERLRAALVGAKAEGGPA-LKKGTEITDDYLDGLERGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + D+ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLRMADDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + + D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ L+DG TG F+RP TVGY+YMLKLNH Sbjct: 1193 GGVPMATPVFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ I+LE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE 1357 >gi|152984487|ref|YP_001346216.1| DNA-directed RNA polymerase subunit beta [Pseudomonas aeruginosa PA7] gi|166229297|sp|A6UZI1|RPOB_PSEA7 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|150959645|gb|ABR81670.1| DNA-directed RNA polymerase, beta subunit [Pseudomonas aeruginosa PA7] Length = 1357 Score = 1710 bits (4428), Expect = 0.0, Method: Composition-based stats. Identities = 725/1365 (53%), Positives = 985/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL ++ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKEQFRDIGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDR--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTF+I G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EEIL+ FY V+ +G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEILNAFYATNVFHIKG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + D +G+ ++E G+++T+ + L++ GV L + D Sbjct: 239 ETLNLELVPQRL-RGEVASIDIKDG-SGKVIVEQGRRITARHINQLEKAGVTQLEVPFDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+ IV+ TGEI E + L ++ +++ I LY + ++ +I +TL Sbjct: 297 LIGRTIAKAIVHPATGEIIAECNTELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++F LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDNTSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDII ++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGPGVLSKEDIIDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V D VT+++V+LSA+EE + IAQA+++L+E G +ELV R E + E + Sbjct: 597 RVVKDSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA R+V+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V R DI+ADGPSTD+G+LALG+NM VAFMPW+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDVVARGDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKM 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G A GP KK T ++ D + R QW+ Sbjct: 957 QLDQIRKDLNEEFRIVEGATFERLRAALVGAKAEGGPA-LKKGTEITDDYLDGLERGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + D+ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLRMADDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + + D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ L+DG TG F+RP TVGY+YMLKLNH Sbjct: 1193 GGVPMATPVFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ I+LE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE 1357 >gi|83949807|ref|ZP_00958540.1| DNA-directed RNA polymerase beta subunit [Roseovarius nubinhibens ISM] gi|83837706|gb|EAP77002.1| DNA-directed RNA polymerase beta subunit [Roseovarius nubinhibens ISM] Length = 1378 Score = 1709 bits (4427), Expect = 0.0, Method: Composition-based stats. Identities = 831/1379 (60%), Positives = 1074/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + G R+R++FGK E++++P+LIEVQK+SYD FL P EG++ F+SV Sbjct: 1 MAQTYLGQKRLRRYFGKIREVLEMPNLIEVQKSSYDLFLNSGDQPQPMDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+ F+ +++EFV YE + PK+DV++C+ RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPISDFNETSVIEFVDYELEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + + + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYDTVEFKLKK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + + G + + LVD +TGE + E+ KK+T +K L ++G V L + + Sbjct: 241 NKGWVTKFFPERVRGTRPTFDLVDANTGEVIAEASKKVTPRAVKKLIDEGQVTELLVPFE 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA DI+N E G IY+EAGD + + +L+E+ + I DIP+L +D+ Sbjct: 301 HIVGKFVARDIINEENGAIYVEAGDELTLERDKDGDIIGGTLKELIDAGITDIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 +N Y+RNT+ DKN +R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 INVGPYMRNTMAQDKNMNRESALMDIYRVMRPGEPPTVDAASALFDTLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD PD R + +EDI+A IK LV+LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALDKPDTQRTLDREDIVACIKALVELRDGKGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHATHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR+V DG+VT++V Y+SA EE+ +AQAN+++DE G F E+V R AG Sbjct: 601 VNKYGFIETPYRRVVDGQVTDNVQYMSATEEQRHVVAQANANIDETGRFVNEMVNTRQAG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NM RQA+PLL+AEAP V Sbjct: 661 EYTLSPIENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQALPLLQAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGAAI+AKRAGI++QVDA RIV+R+ E L+P GVDIYRL KFQRSN Sbjct: 721 GTGIEGVVARDSGAAIMAKRAGIIDQVDAQRIVVRATED-LEPGDPGVDIYRLRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QN+C+NQ+PLVKVGD V + +++ADGP+TD+G+LA+GRN++VAFMPW+GYNFEDS+LISE Sbjct: 780 QNSCINQKPLVKVGDTVIKGEVVADGPATDMGELAVGRNVVVAFMPWNGYNFEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 RM +DVFTS+HIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RMARDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE IL+RNIY+RL ++ G+ AV GPKG K ++ ++ + Sbjct: 960 KDERALQIEREEVERLARDRDDELAILERNIYARLKSMILGKVAVKGPKGVKANSDITEE 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ + QWWQ A++DE+ + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLETLSKGQWWQLALKDEQDAQIVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG+VS+++P EDMPFL DGTPVDI LNPLGVPSRM Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVVSKVVPMEDMPFLADGTPVDICLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA G G +I + DY+ +GD++P+R ++ G + E I+ D+ Sbjct: 1140 NVGQILETHMGWAARGFGVQIDEALQDYRRSGDLTPVREAMKLAYGEEVYDEGIAGMDEG 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 ++ A GVP++TPVFDGA E +N LR A D SGQS+L+DG +GE F RPVTV Sbjct: 1200 QLVEAAGNVTRGVPIATPVFDGAKEADVNDALRRAGFDTSGQSVLFDGRSGEQFARPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEGDE 1378 >gi|218889402|ref|YP_002438266.1| DNA-directed RNA polymerase subunit beta [Pseudomonas aeruginosa LESB58] gi|296387173|ref|ZP_06876672.1| DNA-directed RNA polymerase subunit beta [Pseudomonas aeruginosa PAb1] gi|313111424|ref|ZP_07797228.1| DNA-directed RNA polymerase beta chain [Pseudomonas aeruginosa 39016] gi|226699432|sp|B7V637|RPOB_PSEA8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|218769625|emb|CAW25385.1| DNA-directed RNA polymerase beta chain [Pseudomonas aeruginosa LESB58] gi|310883730|gb|EFQ42324.1| DNA-directed RNA polymerase beta chain [Pseudomonas aeruginosa 39016] Length = 1357 Score = 1709 bits (4427), Expect = 0.0, Method: Composition-based stats. Identities = 725/1365 (53%), Positives = 985/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL ++ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKEQFRDIGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDR--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTF+I G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EEIL+ FY V+ +G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEILNAFYATNVFHIKG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + D +G+ ++E G+++T+ + L++ GV L + D Sbjct: 239 ETLNLELVPQRL-RGEVASIDIKDG-SGKVIVEQGRRITARHINQLEKAGVSQLEVPFDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+ IV+ TGEI E + L ++ +++ I LY + ++ +I +TL Sbjct: 297 LIGRTIAKAIVHPATGEIIAECNTELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++F LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDNTSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDII ++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGPGVLSKEDIIDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V D VT+++V+LSA+EE + IAQA+++L+E G +ELV R E + E + Sbjct: 597 RVVKDSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA R+V+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V R DI+ADGPSTD+G+LALG+NM VAFMPW+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDVVARGDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKM 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G A GP KK T ++ D + R QW+ Sbjct: 957 QLDQIRKDLNEEFRIVEGATFERLRAALVGAKAEGGPA-LKKGTEITDDYLDGLERGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + D+ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLRMADDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + + D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ L+DG TG F+RP TVGY+YMLKLNH Sbjct: 1193 GGVPMATPVFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ I+LE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE 1357 >gi|307543818|ref|YP_003896297.1| DNA-directed RNA polymerase subunit beta [Halomonas elongata DSM 2581] gi|307215842|emb|CBV41112.1| DNA-directed RNA polymerase subunit beta [Halomonas elongata DSM 2581] Length = 1359 Score = 1709 bits (4426), Expect = 0.0, Method: Composition-based stats. Identities = 726/1365 (53%), Positives = 985/1365 (72%), Gaps = 8/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q SY FL + +P+ER + GL AAF+SV Sbjct: 1 MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYDFLQQDRSPEERLDVGLHAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG A LE+VSY F P FDV +C R +TY+ PL++ +RLI++D D + K+I Sbjct: 61 FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDKD--SSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG++ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T + ALGM +EEIL F+ + Sbjct: 179 RVIPYRGSWLDFEFDPKDNVFVRIDRRRKLPATVLMRALGMSAEEILDEFFETSTFHIEK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L + L G + + D D G ++E G+++T ++ L++ G++ L + D Sbjct: 239 SGFSVDLVPSRL-RGETATFDIKDGD-GNVIVEEGRRITQKHIRQLEKSGLERLEVPMDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+D +N TGE+ I + LE + + I I LY + ++ +I +TL Sbjct: 297 LFGKTLAKDQINPNTGELICPCNTAITPELLESLGQAGITTIETLYTNDLDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +AL++IYR+MRPG+ T AE++FN LFF D+YDLS VGR+K N RL Sbjct: 357 KLDTTGSQLEALVEIYRMMRPGEPPTKEAAETLFNNLFFTEDRYDLSGVGRMKFNRRLRR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + DI+ ++ L+++RNG G +DDID+LGNRR+R VGEM +NQ+R+GL+R+ Sbjct: 417 DADTGSGVLDQRDILDVLGELINIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +++ N+YGF+ETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D +VT+DVV+LSA+EE + IAQA++++DE+G ++LV R GE + E++ Sbjct: 597 RKVTDAQVTDDVVHLSAIEEGDFVIAQASATVDENGRLVDDLVQVRHRGETTFMRPEQVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SP+QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+AE P VGTGME VA+ Sbjct: 657 LMDVSPRQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRAEKPLVGTGMERFVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VA+R G+++ VDA RIV+R E ++ +GVDIY L K+ RSNQNTC NQRP+V Sbjct: 717 SGVCAVARRGGVIDSVDAKRIVVRVNEDEIIGGEAGVDIYNLTKYLRSNQNTCQNQRPIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V R DI+ADGPS D+GDLALG+NM +AFMPW+GYNFEDS+L+SER V ED FTSI Sbjct: 777 HTGDVVARGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERAVQEDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLG EEI+ DIPNV E L +DE G++ +GAEV PGDILVGK+TPKG Sbjct: 837 HIQELTCVSRDTKLGAEEISSDIPNVGESALSKLDEAGVVYIGAEVGPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLR P+G+ GTV+DV++F R G++K+ R++S+E++ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVEKDSRALSIEQQ 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D + I + + RL L GQ GPK KK VLS + + E PR QW+ Sbjct: 957 QLDEVRKDLQETYRIAEDATFERLQRTLSGQVVNGGPK-LKKGDVLSDEYLEELPRQQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +QDE + + Q E + +++RF++K K+ GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLRMQDESLNELLAQADEQLENRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYLAVKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++S I+P EDMPF +G +D++LNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RMQPGDKMAGRHGNKGVISAIMPIEDMPFDDNGESIDLILNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG--TGSHTEKISDYDDDSVLRVAEQW 1200 A GLG +I+ ++ D + + +R FL +V + + E++ DD V+ +A+ Sbjct: 1136 MAARGLGVRIEQMLRDAR-EQQVGEIREFLGQVYNTASSTKVEELDSLSDDEVIALAKNL 1194 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K+GVP++TPVFDGA E I +L +A L ESGQ LYDG TGE FDRPVTVGY+YMLKLN Sbjct: 1195 KAGVPMATPVFDGAREHEIKHLLDLAGLPESGQMTLYDGRTGEAFDRPVTVGYMYMLKLN 1254 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1255 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1314 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV GRT++Y+SIV G+ + G PESFNVLVKE+++LG+ I+LE+ Sbjct: 1315 DVEGRTKMYKSIVDGDHAMQAGMPESFNVLVKEIRSLGIDIELES 1359 >gi|99080075|ref|YP_612229.1| DNA-directed RNA polymerase subunit beta [Ruegeria sp. TM1040] gi|122398437|sp|Q1GK49|RPOB_SILST RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|99036355|gb|ABF62967.1| DNA-directed RNA polymerase beta subunit [Ruegeria sp. TM1040] Length = 1379 Score = 1708 bits (4423), Expect = 0.0, Method: Composition-based stats. Identities = 839/1380 (60%), Positives = 1071/1380 (77%), Gaps = 13/1380 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++D+P+LIEVQK+SYD FL AP EG++ F+SV Sbjct: 1 MAQTFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDAPQPLDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV+Y + PK+DVD+C+ RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETSVLEFVNYALERPKYDVDECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVNFKLEK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + LVD TGE + E+GKK+T +K + ++G + L + + Sbjct: 241 SRGWVTPFFPERVRGTRPTYDLVDAATGEIICEAGKKVTPRAVKKMIDEGNITELLVPFE 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G YVA+DI+N E G IY+EAGD + + S++E+ + I DIP+L +D+ Sbjct: 301 HIVGKYVAKDIINEENGAIYVEAGDELTLEYDKDGDIIGGSVKELLDAGITDIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNT+ DKN R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 VNVGPYMRNTMAQDKNMSRETALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +RKEDI+A IK LV+LR+GKG +DDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALDAEDTQRTLRKEDIVACIKALVELRDGKGDVDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V DG+VT++V Y+SA EE +AQAN++LDED F +LV R +G Sbjct: 601 VNKYGFIETPYRVVKDGQVTDEVHYMSATEEMRHTVAQANANLDEDNRFVNDLVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 DYTLAPNESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E +VA+ SGAAI+AKRAG+++Q+DA RIVIR+ L+ +GVDIYR+ KFQRSN Sbjct: 721 GTGIEEIVARDSGAAIMAKRAGVIDQIDAQRIVIRATSD-LELGDAGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVG V + ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGQTVEKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++L G+ AV GPKG + +TV+ D Sbjct: 960 KDERALQIEREEVERLARDRDDELGILDRNIYARLRDLLLGKTAVKGPKGVRGNTVIDED 1019 Query: 1012 LISE-YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 L+ R QWW A+++E+ + +E+L QYE K L+ RF++K+EK++ GDD+PPGV Sbjct: 1020 LLDNQLTRGQWWMLALEEEQDAQILEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGV 1079 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +++VKVF+A+KR +Q GDKMAGRHGNKG++SR++P EDMPFL DGTPVD LNPLGVPSR Sbjct: 1080 MKMVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPMEDMPFLADGTPVDFCLNPLGVPSR 1139 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MNVGQI ETH+GWA GLG KI + DY+ GD++P+R + + G + E IS D+ Sbjct: 1140 MNVGQILETHMGWAARGLGLKIDDALQDYRRTGDLTPVRDAMREAYGEDVYEEGISSMDE 1199 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 ++ A GVP++TPVFDGA E+ +N L A D+SGQSIL+DG TGE F RPVT Sbjct: 1200 TQLIEAAGNVTRGVPIATPVFDGAKEDDVNDALVRAGFDQSGQSILFDGRTGEQFARPVT 1259 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1260 VGIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1319 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1320 LQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVEE 1379 >gi|116052305|ref|YP_788849.1| DNA-directed RNA polymerase subunit beta [Pseudomonas aeruginosa UCBPP-PA14] gi|122261454|sp|Q02T87|RPOB_PSEAB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|115587526|gb|ABJ13541.1| DNA-directed RNA polymerase beta chain [Pseudomonas aeruginosa UCBPP-PA14] Length = 1357 Score = 1708 bits (4423), Expect = 0.0, Method: Composition-based stats. Identities = 725/1365 (53%), Positives = 984/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL ++ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKEQFRDIGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDR--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTF+I G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EEIL+ FY V+ +G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEILNAFYATNVFHIKG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + D +G+ ++E G+++T+ + L++ GV L + D Sbjct: 239 ETLNLELVPQRL-RGEVASIDIKDG-SGKVIVEQGRRITARHINQLEKAGVSQLEVPFDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+ IV+ TGEI E + L ++ +++ I LY + ++ +I +TL Sbjct: 297 LIGRTIAKAIVHPATGEIIAECNTELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++F LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDNTSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDII ++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGPGVLSKEDIIDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +A+ EFF SSQLSQ N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMGQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V D VT+++V+LSA+EE + IAQA+++L+E G +ELV R E + E + Sbjct: 597 RVVKDSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA R+V+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V R DI+ADGPSTD+G+LALG+NM VAFMPW+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDVVARGDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKM 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G A GP KK T ++ D + R QW+ Sbjct: 957 QLDQIRKDLNEEFRIVEGATFERLRAALVGAKAEGGPA-LKKGTEITDDYLDGLERGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + D+ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLRMADDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + + D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ L+DG TG F+RP TVGY+YMLKLNH Sbjct: 1193 GGVPMATPVFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ I+LE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE 1357 >gi|36333351|gb|AAP75733.1| RNA polymerase beta subunit [Afipia genosp. 3] Length = 1374 Score = 1707 bits (4422), Expect = 0.0, Method: Composition-based stats. Identities = 888/1346 (65%), Positives = 1088/1346 (80%), Gaps = 8/1346 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ F G RVRKFFG E+ ++P+LIEVQKASYD FLM+ P R +EGLQA F+ Sbjct: 1 MAQQ-TFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVAEPPGGREDEGLQAVFR 59 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI+ FS A+MLEFV YEF+PPK+DVD+C R +TYA PLK+TLRLIVFD+DE TGA+ Sbjct: 60 SVFPISDFSNASMLEFVRYEFEPPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETGAR 119 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 120 SVKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 179 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A R+IP +G W+DIEFD+KDI+ RIDRRRK+PVTS + ALG+D EEILSTFY KI+Y + Sbjct: 180 AARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKILYKR 239 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P A+ G + L+D DTG+ V+E+GKKLT + L+EKG+K L ++ Sbjct: 240 TKEGWRVPFDAS-RFRGYSTVNDLIDADTGKVVLEAGKKLTVRNARQLQEKGLKALRLSD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G Y+AED+VN +TGEIY EAG+ I EKSL+ + +++P+L +D VN YIRN Sbjct: 299 EELVGNYLAEDLVNPKTGEIYAEAGEEITEKSLKALNEEGYKELPLLDIDHVNVGPYIRN 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN R+DAL DIYRVMRPG+ T A++MF LFFDS++YDLS VGRVKMNMRL Sbjct: 359 TLSADKNMTREDALFDIYRVMRPGEPPTLDSAQNMFQSLFFDSERYDLSAVGRVKMNMRL 418 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +LD PD R +RKEDI+A+I+ LV LR+GKG IDDID+LGNRRVRSVGE+++NQYR+GLL Sbjct: 419 DLDAPDTHRTLRKEDILAVIQTLVGLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLL 478 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+SSVDID+VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RR Sbjct: 479 RMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 538 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGF+ET Sbjct: 539 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVET 598 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPR 658 PYRKV DG+VT++VVYLSAMEE +AQAN SLD G FT++LV CR + + +P Sbjct: 599 PYRKVKDGRVTDEVVYLSAMEEGRYAVAQANVSLDAKGKFTDDLVVCRAGGTRDVVPLPA 658 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +++D++D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME V Sbjct: 659 DQVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGV 718 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R G+++Q+DA RIVIR+ E LDP+ SGVDIYRLMK+QRSNQ+TC+NQ Sbjct: 719 VARDSGAAIAARRTGVIDQIDATRIVIRATED-LDPTKSGVDIYRLMKYQRSNQSTCINQ 777 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD+V + DIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+L+SER+V EDV Sbjct: 778 RPLVKVGDKVAKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDV 837 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE LKN+DE GI+ +GAEV GDILVGKI Sbjct: 838 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKI 897 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP GV GT+V+VR+FNRHG+DK+ER+++ Sbjct: 898 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALA 957 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ERE+IE LA+D+DDEQ ILDRN+Y RL ++L G+ AV+GPKGFKK T ++ ++ EYP+ Sbjct: 958 IEREEIERLAKDRDDEQAILDRNVYGRLADLLDGRQAVAGPKGFKKDTKITRAVLEEYPK 1017 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 SQWW FA ++K+ +E+++ QY+ SK LE RF +K+EK+Q GD++PPGV+++VKVFV Sbjct: 1018 SQWWLFAAPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFV 1077 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR IQ GDKMAGRHGNKG+VS+I+P EDMPFL+DGT DIVLNPLGVPSRMNVGQI E Sbjct: 1078 AVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE 1137 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC GLGK+I I+ Y D+ PLR L K+ G E I D+ ++ + Sbjct: 1138 THLGWACAGLGKRIGEAIDSYYQREDLKPLRETLRKIYGDD---ETIKSLDEKELVELGR 1194 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 GVP++TPVFDGA E I ML++A D SGQS +YDG TG+ FDR VTVGYIYMLK Sbjct: 1195 NLSHGVPIATPVFDGAKEADIEEMLKLAGFDASGQSTVYDGRTGDQFDRRVTVGYIYMLK 1254 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1255 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1314 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTP 1344 SDDV GRT+VYESIV G DT +P Sbjct: 1315 SDDVAGRTKVYESIVRGEDTSRPVSP 1340 >gi|110681145|ref|YP_684152.1| DNA-directed RNA polymerase subunit beta [Roseobacter denitrificans OCh 114] gi|123361524|sp|Q160X7|RPOB_ROSDO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|109457261|gb|ABG33466.1| DNA-directed RNA polymerase, beta subunit [Roseobacter denitrificans OCh 114] Length = 1378 Score = 1707 bits (4422), Expect = 0.0, Method: Composition-based stats. Identities = 840/1379 (60%), Positives = 1062/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++D+P+LIEVQK+SYD FL A EG+ F+SV Sbjct: 1 MAQSFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLNSGEAEVPTDGEGIAGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LE+V YE + PK+DV++C RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETSVLEYVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L +LG+D E I+ +Y I Y Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYSLGLDQEAIMDAYYDTITYKLEK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + D + G + + LVD +GE + E GKK+T +K L ++G V L + + Sbjct: 241 NKGWVAPFFPDRVRGTRPTYDLVDAASGEVLFERGKKVTPRAVKKLIDEGKVTELLLPYE 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA+DI+N ETG IY+EAGD + + + +E+ + I +IP+L +D+ Sbjct: 301 HIAGKFVAKDIINEETGAIYVEAGDELTLEYDKDGTLIGGTAKELVDAGITEIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNT+ DKN +R AL+DIYRVMRPG+ T A ++F+ LFFD+++YDLS V Sbjct: 361 VNVGPYMRNTMAQDKNMNRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDAERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +R+EDI+A IK LVDLR+G+G IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALDAEDTQRTLRREDIVACIKALVDLRDGRGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYRKV + VT++V Y+SA EE +AQAN+ LDEDG F +LV R +G Sbjct: 601 VNKYGFIETPYRKVENRMVTDEVQYMSATEEMRHTVAQANAQLDEDGRFKNDLVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 DYTLAPSENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGAAI+AKRAGI++QVDA RIVIR+ L+ +GVDIYR+ KFQRSN Sbjct: 721 GTGIEEVVARDSGAAIMAKRAGIIDQVDAQRIVIRATSD-LELGDAGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVGD V + +IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGDTVLKGQVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL + G+ AV GPKG + ++ D Sbjct: 960 KDERALQIEREEVERLARDRDDEMAILDRNIYARLKSTILGKVAVKGPKGVSANAEITED 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ PR QWWQ A++DE + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLQMLPRVQWWQLALKDEGDAQVVEALNEQYEIQKRTLDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1080 KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG + + +Y+ +GD++P+R L G + E I+ D++ Sbjct: 1140 NVGQILETHMGWAARGLGLNVDEALQEYRRSGDLTPVRDALSHAYGENVYDEGIAGMDEE 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 +++ A GVP++TPVFDGA E +N L A ESGQSIL+DG TGE F RPVTV Sbjct: 1200 TLIEAAGNVTRGVPIATPVFDGAKEGDVNDALVRAGFSESGQSILFDGRTGEQFARPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEDE 1378 >gi|163745526|ref|ZP_02152886.1| DNA-directed RNA polymerase subunit beta [Oceanibulbus indolifex HEL-45] gi|161382344|gb|EDQ06753.1| DNA-directed RNA polymerase subunit beta [Oceanibulbus indolifex HEL-45] Length = 1378 Score = 1707 bits (4421), Expect = 0.0, Method: Composition-based stats. Identities = 838/1379 (60%), Positives = 1071/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL A EG+ F+SV Sbjct: 1 MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLNSGDAETPTDGEGITGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LE+V YE + PK+DV++C RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETSVLEYVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD ++ RIDRRRK+PVT+ L ALG+D E I+ +Y + Y Sbjct: 181 RIIPYRGSWLDFEFDAKDNVYARIDRRRKLPVTTLLYALGLDQEAIMDAYYKTVTYKLEK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + D + G + + LVD DTGE + E+ KK+T +K L ++G VK L + D Sbjct: 241 NKGWVAPFFPDRVRGTRPTYDLVDADTGEILFEATKKVTPRAVKKLLDEGKVKDLLLPFD 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA DI+N ETG IY+EAGD + + + +E+ + I +IP+L +D+ Sbjct: 301 HIVGKFVARDIINEETGAIYVEAGDELTLEYDKDGTLIGGTAKELIDAGITEIPLLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNT+ DKN +R AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 VNVGPYMRNTMAMDKNMNRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL L+ PD R + ++DI+A IK LVDLR+G+G IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALEKPDTQRTLDRDDIVACIKALVDLRDGRGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V D VT++V Y+SA EE +AQAN++LDE+ F E+V R +G Sbjct: 601 VNKYGFIETPYRVVKDSIVTDEVHYMSATEEMRHTVAQANANLDENMKFVNEMVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 DYTLAPTENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGAA +A+RAGI++QVDA RIVIR+ E L+ +GVDIYR+ KFQRSN Sbjct: 721 GTGIEEVVARDSGAAYMARRAGIIDQVDASRIVIRATED-LELGDAGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVG++V + +IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGEKVTKGQVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RISQDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL +++ G+ AV GPKG K ++ ++ + Sbjct: 960 KDERALQIEREEVERLARDRDDELAILDRNIYARLKDMILGKIAVKGPKGVKANSQITEE 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ R QWWQ A++DE + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLETLTRGQWWQLALEDEDDAKIVEALNEQYEIQKRTLDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1080 KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG I + +YK +GD++P+R ++ G + E I+ D+D Sbjct: 1140 NVGQILETHMGWAARGLGINIDEALQEYKRSGDLTPVREAMQLAYGDDVYEEGITGMDED 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 ++L VA+ + GVP++TPVFDGA E +N L+ A D SGQS+L+DG TGE F RPVTV Sbjct: 1200 TLLEVADNVRRGVPIATPVFDGAKEADVNDSLKRAGFDTSGQSVLFDGRTGEQFARPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGIPESFNVLVKEVRGLGLNMELLDAEEDE 1378 >gi|226942770|ref|YP_002797843.1| DNA-directed RNA polymerase subunit beta [Azotobacter vinelandii DJ] gi|259494175|sp|C1DKK5|RPOB_AZOVD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226717697|gb|ACO76868.1| DNA-directed RNA polymerase, beta subunit [Azotobacter vinelandii DJ] Length = 1358 Score = 1707 bits (4420), Expect = 0.0, Method: Composition-based stats. Identities = 721/1366 (52%), Positives = 984/1366 (72%), Gaps = 10/1366 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL ++ D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGVSKDKLRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L FY V+ Sbjct: 179 RIIPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALGYSTEEVLDIFYDTNVFHVTE 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + D +G+ ++E G+++T+ + L++ G+K L + + Sbjct: 239 QGLSLELVPQRL-RGEIAVFDIKDA-SGKVIVEQGRRITARHINQLEKAGIKELDVPLEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E + + L +I +++ I LY + ++ +I +TL Sbjct: 297 VLGRTSAKVIVHPSTGEIIAECNSELTQDLLVKIAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDSTTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + +EDI+ ++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 EEIEGAGVLSREDIVDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G+VT+++V+LSA+EE + IAQA+++LDE+G +ELV R E + E + Sbjct: 597 RVVKEGQVTDEIVFLSAIEEADHVIAQASATLDENGRLIDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVNNDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD+V R DI+ADGPSTD+G+LALG+NM VAFMPW+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDQVARGDIMADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVMAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++++ER Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIERM 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G G G KK T + ++ R QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRAALVGAVCEGG-AGLKKGTEIDDGILDGLERGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + D+ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLRMADDALNEQLEKAQAYLADRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP+ +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPYDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT--GSHTEKISDYDDDSVLRVAEQW 1200 A GLG+KI ++ + + ++ LR FL +V G E + D +L +A Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRQFLGEVYNEIGGRQKEDLDSLSDSEILDLASNL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++TPVFDGA E I +ML++ADL ESGQ L+DG TG F+RP TVGY+YMLKLN Sbjct: 1193 RGGVPMATPVFDGARETEIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLN 1252 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1253 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1312 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG+ I+LE Sbjct: 1313 DVNGRTKMYKNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE 1358 >gi|103486971|ref|YP_616532.1| DNA-directed RNA polymerase subunit beta [Sphingopyxis alaskensis RB2256] gi|123078349|sp|Q1GT23|RPOB_SPHAL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|98977048|gb|ABF53199.1| DNA-directed RNA polymerase, beta subunit [Sphingopyxis alaskensis RB2256] Length = 1392 Score = 1707 bits (4420), Expect = 0.0, Method: Composition-based stats. Identities = 835/1381 (60%), Positives = 1066/1381 (77%), Gaps = 12/1381 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + + R+RK FG E +++P+LIEVQ+ SY+ FL + P GL+ +SV Sbjct: 10 QALEATATKRIRKLFGNIHEAVEMPNLIEVQRESYEQFLRSD--PSIGYVSGLEKTLRSV 67 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+G A L+FV YE + PK+DV++C R +TYA P+K+TLRLIVF+VD T +S+ Sbjct: 68 FPIRDFAGTAELDFVHYELEAPKYDVEECRQRGITYAAPMKVTLRLIVFEVDSETDTRSV 127 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 DIKEQ +YMGD+PLMT++GTF + G +R++VSQ+HRSPG+ FDHD+G+ SGK L+A Sbjct: 128 LDIKEQDVYMGDMPLMTENGTFFVNGTERVIVSQMHRSPGVLFDHDRGKTHSSGKFLFAA 187 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KDI++VRIDR+RK+PVTS L ALGM EEIL+ FY ++V+ + Sbjct: 188 RVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYALGMTGEEILNHFYDRLVFERAE 247 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + W P + G+K + +VD TGE V +G K++ L + G+ L I ++ Sbjct: 248 NGWKVPFMVEN-WRGSKPAFDVVDAKTGEVVFAAGHKISPRLANKAAKDGLDTLLIPTEE 306 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y A D++N TGEIYIEAGD + ++LE++ + I + +L +D N +IRNTL Sbjct: 307 IFGRYSAYDLINESTGEIYIEAGDEVSAENLEKLDAAGIDKLVLLDIDHNNTGPWIRNTL 366 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DK +DR AL DIYRVMRPG+ T AE++F LFFD ++YDLS VGRVK+NMRL L Sbjct: 367 KADKAEDRDQALSDIYRVMRPGEPPTRETAEALFAGLFFDPERYDLSAVGRVKLNMRLGL 426 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D D V +R EDI+A++K LV+L++GKG IDDIDNLGNRRVRSVGE+L+NQYR+GLLRM Sbjct: 427 DAEDTVTTLRSEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVGLLRM 486 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 487 ERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVS 546 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIETPY Sbjct: 547 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIETPY 606 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DGKVTN+VVYLSAMEE +AQAN+ L+ DGSF +EL+ R AGE ++ PRE+I Sbjct: 607 RRVVDGKVTNEVVYLSAMEESKHTVAQANADLNPDGSFIDELISAREAGEFLMAPREQIT 666 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP VGTGME VA+ Sbjct: 667 LMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPVVGTGMEETVARD 726 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGAAI A+R G+++QVDA RIVIR+ + ++P SGVDIYRL KFQRSNQNTC+NQRPLV Sbjct: 727 SGAAIAARRGGVIDQVDATRIVIRATD-MVEPGKSGVDIYRLQKFQRSNQNTCINQRPLV 785 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD VR DIIADGPST+LG+LALG+N+LVAFMPW+GYN+EDS+LISER+V +DVFTSI Sbjct: 786 KVGDVVRAGDIIADGPSTELGELALGKNVLVAFMPWNGYNYEDSILISERIVKDDVFTSI 845 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFEV ARDT+LGPE+ITRDIPNV EE L+N+DE GI+ +GAEV PGDIL GKITPKG Sbjct: 846 HIEEFEVTARDTRLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVGPGDILAGKITPKG 905 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P GVSGTVV+VR+FNRHGIDK+ER+I++ERE Sbjct: 906 ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVEVRVFNRHGIDKDERAIAIERE 965 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE L +D DDE+ IL+R +S L ++L GQ + PKG KK +++ +++ R+ WW Sbjct: 966 EIERLKQDADDERAILNRATFSSLKDLLVGQATSAVPKGLKKGDIVTEEMLVGLDRADWW 1025 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + AV D+K Q +E++K QY+ + + ++++++EK+Q GD++ PGVL++VKVFVA+KR Sbjct: 1026 KLAVVDDKAQTALEAIKAQYDDAIKRINAKYEDRVEKLQRGDELAPGVLKMVKVFVAVKR 1085 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++SRILP EDMPFL+DGTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1086 KLQPGDKMAGRHGNKGVISRILPVEDMPFLEDGTPVDIVLNPLGVPSRMNVGQILETHLG 1145 Query: 1143 WACVGLGKKIKSLINDYKANGD-------ISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 WA GLG+++ + +++ +R LE V G + E I D + ++ Sbjct: 1146 WASRGLGQQVTRALEEWRDANPDATGGEMPEAVREKLEHVYGAE-YVEDIRSRDAEGIIE 1204 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 +A K GVP +TPVFDGA E +++ML +A LDESGQS LYDG TG+ FDR VTVGYIY Sbjct: 1205 LASNLKVGVPFATPVFDGAKEADVSNMLTLAGLDESGQSDLYDGRTGDKFDRKVTVGYIY 1264 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEML Sbjct: 1265 MLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEML 1324 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 T+KSDDV+GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L + ++ + Sbjct: 1325 TVKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSYAEEDPDEGP 1384 Query: 1376 E 1376 E Sbjct: 1385 E 1385 >gi|329850779|ref|ZP_08265624.1| DNA-directed RNA polymerase, beta subunit [Asticcacaulis biprosthecum C19] gi|328841094|gb|EGF90665.1| DNA-directed RNA polymerase, beta subunit [Asticcacaulis biprosthecum C19] Length = 1358 Score = 1706 bits (4419), Expect = 0.0, Method: Composition-based stats. Identities = 850/1366 (62%), Positives = 1060/1366 (77%), Gaps = 8/1366 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + F R+RK FG+ PE I +P+LIEVQ++SY+ FL + +R +GL+A F+SV Sbjct: 1 MPLTFTQKKRIRKSFGRIPEAIQMPNLIEVQRSSYEQFLQRFVRVADRVEDGLEAVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ F+ A LE+VSYEF+ PK+DV++C+ RD+TYA PLK+ LRLIVF+ DE TGA+S+ Sbjct: 61 FPVKDFNERATLEYVSYEFEEPKYDVEECIQRDITYAAPLKVKLRLIVFETDEDTGARSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT+ GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 KDIKEQDVYMGDIPLMTEKGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFGA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI++VRIDRRRK+P TSFL ALGMD EE+L TFY + Y +R Sbjct: 181 RIIPYRGSWLDFEFDAKDILYVRIDRRRKLPATSFLFALGMDGEEVLKTFYEVVPYEKRD 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W P + G K L+D ++GE V +G K+++ K L + VKFL ++ D Sbjct: 241 AGWVTPY-KFERWRGVKPEFDLIDAESGEVVAPAGTKISARNAKKLGDT-VKFLLLSQDA 298 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G Y+A D VN TGEIY EAGD +D S++ + + + +L +D V Y+R+TL Sbjct: 299 LIGRYLAGDAVNFATGEIYAEAGDELDAASVKALEDNGFTTVDVLDIDHVTVGPYMRSTL 358 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN R+DAL DIYRVMRPG+ T AE+MF LFF+ ++YDLS+VGRVKMNMRL Sbjct: 359 RVDKNSSREDALFDIYRVMRPGEPPTIEAAEAMFGSLFFELERYDLSSVGRVKMNMRLEQ 418 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D D R +R++DI+ I+KILV LR+G+G IDDIDNLGNRRVRSVGE+L+NQYR+GLLRM Sbjct: 419 DVADSERVLRRDDILKILKILVGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRM 478 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+SSVDID+VMP DLINAKP +AV EFF SSQLSQ + N LS ITH RRLS Sbjct: 479 ERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS 538 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + ARVN YGFIE+PY Sbjct: 539 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPY 598 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG DVVY+SAMEE IAQAN LD D E+LV R GE L +D Sbjct: 599 RKVVDGVAKEDVVYMSAMEESKHVIAQANIVLDSDKRIVEDLVQGRVNGEPGLQQASTVD 658 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SPKQVVS+AA+LIPFLENDD+NR LMG NMQRQAVPL+K++APFVGTGME VVA+ Sbjct: 659 FMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKSDAPFVGTGMEEVVARD 718 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA + A+R+G+VEQ+D RIV+R+ E + DP+ GVDIYRL KFQRSNQNTC+NQRP+V Sbjct: 719 SGATVGARRSGVVEQIDGTRIVVRATEEN-DPTKPGVDIYRLSKFQRSNQNTCINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD+V DIIADGPSTDLGDLALGRN+LVAFMPW+GYNFEDS+LISER+V +D+FTSI Sbjct: 778 KVGDKVAAGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILISERIVRDDIFTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 H+EEFEVMARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 838 HLEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GTVV+VR+FNRHG++K+ER+ ++ER Sbjct: 898 ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGVEKDERAQAIERA 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE L +D+DDE IL+RNIY RL EIL G+NAVSGPKG + V + D + E R WW Sbjct: 958 EIERLGKDRDDELHILERNIYGRLKEILIGKNAVSGPKGLGRGEV-TEDKLGEISRGLWW 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 Q A++DEK+ +E++ Q++ ++ L+ RF++K+EK+Q GD++PPGV+++VKVFVA+KR Sbjct: 1017 QIALEDEKIMSEIEAMNRQFQDARKRLDRRFEDKVEKLQRGDELPPGVMKMVKVFVAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++S+ILP EDMPFL DG VDIVLNPLGVPSRMNVGQIFETHLG Sbjct: 1077 KLQPGDKMAGRHGNKGVISKILPVEDMPFLADGEHVDIVLNPLGVPSRMNVGQIFETHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WAC +GK+I ++ D++ G L L+ V G + ++ ++ +A Sbjct: 1137 WACANIGKQIGKMLEDWQNGGQKQALIDHLQAVYGKDQELPE----SEEDLIELARNLTR 1192 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA I ML MA L+ SGQSIL+DG TGE F RPVTVG IYMLKL+H+ Sbjct: 1193 GVPIATPVFDGAHINDIEDMLEMAGLNRSGQSILFDGQTGEQFKRPVTVGIIYMLKLHHL 1252 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1253 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1312 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 GRT+VYE+IV G+D+FE G PESFNVL+KEM++LGL+++LEN + Sbjct: 1313 AGRTKVYEAIVRGDDSFEAGIPESFNVLIKEMRSLGLNVELENGQG 1358 >gi|163732880|ref|ZP_02140325.1| DNA-directed RNA polymerase subunit beta [Roseobacter litoralis Och 149] gi|161394240|gb|EDQ18564.1| DNA-directed RNA polymerase subunit beta [Roseobacter litoralis Och 149] Length = 1378 Score = 1706 bits (4419), Expect = 0.0, Method: Composition-based stats. Identities = 840/1379 (60%), Positives = 1061/1379 (76%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++D+P+LIEVQK+SYD FL A EG+ F+SV Sbjct: 1 MAQSFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLNSGEADVPTDGEGITGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LE+V YE + PK+DV++C RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETSVLEYVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L +LG+D E I+ +Y I Y Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYSLGLDQEAIMDAYYNTITYKLEK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + D + G + + LVD +GE + E GKK+T +K L ++G V L + + Sbjct: 241 NKGWVAPFFPDRVRGTRPTYDLVDAASGEILFEKGKKVTPRAVKKLIDEGKVTELLLPYE 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA+DI+N ETG IY+EAGD + + + +E+ + I +IP+L +D+ Sbjct: 301 HIAGKFVAKDIINEETGAIYVEAGDELTLEYDKDGTLIGGTAKELVEAGITEIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNT+ DKN +R AL+DIYRVMRPG+ T A ++F+ LFFD+++YDLS V Sbjct: 361 VNVGPYMRNTMAQDKNMNRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDAERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +R+EDI+A IK LVDLR+G+G IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALDAEDTQRTLRREDIVACIKALVDLRDGRGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYRKV + VT++V Y+SA EE +AQAN+ LDEDG F +LV R +G Sbjct: 601 VNKYGFIETPYRKVENRMVTDEVQYMSATEEMRHTVAQANAQLDEDGRFKNDLVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 DYTLAPSENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGAAI+AKRAGI++QVDA RIVIR+ L+ +GVDIYR+ KFQRSN Sbjct: 721 GTGIEEVVARDSGAAIMAKRAGIIDQVDAQRIVIRATSD-LELGDAGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVGD V + +IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGDTVLKGQVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL + G+ AV GPKG + ++ D Sbjct: 960 KDERALQIEREEVERLARDRDDEMAILDRNIYARLKSTIMGKVAVKGPKGVSSNAEITDD 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ PR QWWQ A++DE + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLQMLPRGQWWQLALKDEADAQVVEALNEQYEIQKRTLDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1080 KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLGDGTPVDFCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG + + +Y+ +GD++P+R L G + E I D+D Sbjct: 1140 NVGQILETHMGWAARGLGVNVDEALQEYRRSGDLTPVRDALSLAYGQDVYDEGIVGMDED 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 +++ A GVP++TPVFDGA E +N L A D SGQS+L+DG TGE F RPVTV Sbjct: 1200 TLIEAAGNVTRGVPIATPVFDGAKEADVNDALTRAGFDTSGQSVLFDGRTGEQFARPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEDE 1378 >gi|114764154|ref|ZP_01443392.1| DNA-directed RNA polymerase beta subunit [Pelagibaca bermudensis HTCC2601] gi|114543306|gb|EAU46322.1| DNA-directed RNA polymerase beta subunit [Roseovarius sp. HTCC2601] Length = 1378 Score = 1706 bits (4419), Expect = 0.0, Method: Composition-based stats. Identities = 835/1380 (60%), Positives = 1070/1380 (77%), Gaps = 14/1380 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK+FGK E++++P+LIEVQK+SY+ FL P EG++ F+SV Sbjct: 1 MAQSFLGQKRLRKYFGKIREVLEMPNLIEVQKSSYELFLKSGDQPQPTDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LEFVSYE + PK+DV++C+ RD+TY+ PLK+TLRLIVFD+DE TGAKS+ Sbjct: 61 FPIKDFNETAVLEFVSYELEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDIDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR- 241 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + Y+ R Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYKTVTYNLRR 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITS 300 G+ W + G + + LVD D+GE + E+ KK+T +K L ++G V+ L + Sbjct: 241 GEGWVTKFFPE-RVRGTRPTYDLVDADSGEIIAEATKKVTPRAVKKLIDEGNVQNLLLPF 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVD 350 D + G YV++DI+N ETG IY+EAGD + +L+E+ + I +IP+L +D Sbjct: 300 DQIVGKYVSKDIINEETGAIYVEAGDELTWTVDKDGDVTGGTLKELVDAGITEIPVLDID 359 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +V Y+RNT+ DKN DR AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS Sbjct: 360 NVTVGPYMRNTMAQDKNMDRNSALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSA 419 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VGRVKMNMRL L+ PD R + ++DI+ IK LV+LR+GKG +DDID+LGNRRVRSVGE+ Sbjct: 420 VGRVKMNMRLALEKPDTQRTLDRDDIVKCIKALVELRDGKGEVDDIDHLGNRRVRSVGEL 479 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 ++NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 480 MENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTN 539 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FA Sbjct: 540 PLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFA 599 Query: 591 RVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA 650 RVN YGFIETPYR V D +VT++V Y+SA EE +AQAN+++DE G F E+V R + Sbjct: 600 RVNKYGFIETPYRVVKDKQVTDEVHYMSATEEMRHTVAQANANIDEGGQFINEMVNTRQS 659 Query: 651 GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF 710 G+ L P E +D ID SPKQ+VS+ ASLIPFLENDD+NR LMG NMQRQAVP L++EAP Sbjct: 660 GDYTLAPAESVDLIDVSPKQLVSVGASLIPFLENDDANRALMGANMQRQAVPTLRSEAPL 719 Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRS 770 VGTG+E VA SGAAI A RAGIV+QVDA RIVIR+ E L+ +GVDIYR+ KFQRS Sbjct: 720 VGTGIEGKVAIDSGAAIQAHRAGIVDQVDAQRIVIRATED-LELGDAGVDIYRMRKFQRS 778 Query: 771 NQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS 830 NQNTC+NQRPL+KVGD+V + ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LIS Sbjct: 779 NQNTCINQRPLIKVGDKVGKGEVIADGPSTDMGELALGKNVIVAFMPWNGYNYEDSILIS 838 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 ER+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V P Sbjct: 839 ERIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEP 898 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 GDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG+ Sbjct: 899 GDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGV 958 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSS 1010 +K+ER++ +ERE++E LARD+DDE ILDRNIY+RL +++ G+ AV GPKG K ++ ++S Sbjct: 959 EKDERALQIEREEVEQLARDRDDELAILDRNIYARLGDLILGKTAVKGPKGVKPNSEITS 1018 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 +L+ R QWWQ A+ +E+ + VE+L QYE K L+ RF++K+EK++ GDD+PPGV Sbjct: 1019 ELLETLSRGQWWQLALAEEQDAQIVEALHEQYEAQKRALDARFEDKVEKVRRGDDLPPGV 1078 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +++VKVFVA+KR +Q GDKMAGRHGNKG++SR++P EDMPFL+DGTPVD LNPLGVPSR Sbjct: 1079 MKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRVVPMEDMPFLEDGTPVDFCLNPLGVPSR 1138 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MNVGQI ETH+GWA GLG KI + DY+ +GD++P+R + G + E I+D ++ Sbjct: 1139 MNVGQILETHMGWASRGLGIKIDDALQDYRRSGDLTPVREAMRIAYGDEVYDEGIADMEE 1198 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 D ++ A GVP++TPVFDGA E +N L A D SGQS L+DG TGE F R VT Sbjct: 1199 DLLVEAAGNVTRGVPIATPVFDGAKEADVNDALSRAGFDTSGQSRLFDGRTGEEFARKVT 1258 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1259 VGVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1318 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQEMLT+KSDDV GRT+VYESIV G D +E G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1319 LQEMLTVKSDDVAGRTKVYESIVKGEDNYEAGVPESFNVLVKEVRGLGLNMELLDAEGEE 1378 >gi|159042824|ref|YP_001531618.1| DNA-directed RNA polymerase subunit beta [Dinoroseobacter shibae DFL 12] gi|189043854|sp|A8LM40|RPOB_DINSH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157910584|gb|ABV92017.1| DNA-directed RNA polymerase, beta subunit [Dinoroseobacter shibae DFL 12] Length = 1378 Score = 1706 bits (4417), Expect = 0.0, Method: Composition-based stats. Identities = 848/1382 (61%), Positives = 1080/1382 (78%), Gaps = 16/1382 (1%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ V+ G R RK++GK E++++P+LIEVQK+SYD FL P EG+ F+ Sbjct: 1 MAQTVL--GQKRFRKYYGKIREVLEMPNLIEVQKSSYDLFLKSGDQPQPMDGEGIMGVFQ 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI F+ A+LEFV YE + PK+DV++C RD+TY+ PLK+TLRLIVFDVDE TGAK Sbjct: 59 SVFPIKDFNETAVLEFVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAK 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 119 SVKDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS- 239 ACRIIP +G W+D EFD+KD++ RIDRRRK+PVT+ L +LGMD ++I+ +Y + Y+ Sbjct: 179 ACRIIPYRGSWLDFEFDAKDLVFARIDRRRKLPVTTLLYSLGMDQQDIMDAYYDTVTYTH 238 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGI 298 ++G+ W + G + + +VD TGE + E+GKK+T +K L ++G V + + Sbjct: 239 RKGEGWVTKFFPE-RIRGTRPTQDVVDAATGEVIAEAGKKVTPRAVKQLIDEGNVSEILV 297 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILY 348 D + G + A+DI+N E G IY+EAGD + + +L+E+ + I +IP+L Sbjct: 298 PFDGIIGKFAAKDIINEENGAIYVEAGDELTWEVDKDGAVTGGTLKELLDAGIEEIPVLD 357 Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D++ AY+RNTL DKN +R AL+DIYRVMRPG+ T A ++F+ LFFDS++YDL Sbjct: 358 IDNITVGAYMRNTLAADKNMNRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDL 417 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 S VGRVKMNMRL LD D VR +RKEDI++ IK LVDLR+G+G IDDID+LGNRRVRSVG Sbjct: 418 SAVGRVKMNMRLALDAEDTVRTLRKEDIVSCIKALVDLRDGRGDIDDIDHLGNRRVRSVG 477 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 E+++NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + Sbjct: 478 ELMENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQ 537 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL + Sbjct: 538 TNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLAT 597 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 FARVN YGFIETPYR+V DGKVT++V Y+SA EE +AQAN++LDE GSF E+V R Sbjct: 598 FARVNKYGFIETPYRRVEDGKVTDEVNYMSATEEMRHTVAQANANLDESGSFVNEMVNTR 657 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 +GE L PRE +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+A+A Sbjct: 658 QSGEYTLAPRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQADA 717 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTG+E VVA+ SGAAI+A+R G ++QVDA RIVIR+ E L+P GVDIYRL KFQ Sbjct: 718 PFVGTGIEGVVARDSGAAIMARRGGFIDQVDATRIVIRATED-LEPGDPGVDIYRLRKFQ 776 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQNTC+NQRPLVKVGD+V ++D+IADGPSTDLG+LALG+N++VAFMPW+GYN+EDS+L Sbjct: 777 RSNQNTCINQRPLVKVGDKVGKDDVIADGPSTDLGELALGKNVVVAFMPWNGYNYEDSIL 836 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 ISER+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V Sbjct: 837 ISERVARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADV 896 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 PGDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+FNRH Sbjct: 897 GPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRLPPGDFGTVVEVRVFNRH 956 Query: 949 GIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL 1008 G++K+ER++ +ERE++E LARD+DDE IL+RNIY+RL +++ G+ AV GPKG K + + Sbjct: 957 GVEKDERALQIEREEVESLARDRDDEMAILERNIYARLKDMILGKTAVKGPKGVKPGSEI 1016 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPP 1068 + DL+ R QWWQ A++DE + VE+L QYE K L RF++K+EK++ GDD+PP Sbjct: 1017 TEDLLGTLSRGQWWQLALEDEAEAQMVEALNQQYEAQKRALTARFEDKVEKVRRGDDLPP 1076 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV+++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD VLNPLGVP Sbjct: 1077 GVMKMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFVLNPLGVP 1136 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDY 1188 SRMNVGQI ETH+GWA G+G KI + +Y+ +GD++P+R + G ++ E IS Sbjct: 1137 SRMNVGQILETHMGWAARGMGLKIDEALGEYRRSGDMTPVREAMRLAYGDEAYEEAISGL 1196 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D D +L A GVP++TPVFDGA E +N L A D SGQS LYDG TGE F R Sbjct: 1197 DQDDLLERAGNVTRGVPIATPVFDGAKEADVNDALTRAGFDTSGQSDLYDGRTGEKFARQ 1256 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 VTVG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA Sbjct: 1257 VTVGVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1316 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 Y LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1317 YTLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEG 1376 Query: 1369 KN 1370 + Sbjct: 1377 EE 1378 >gi|254477218|ref|ZP_05090604.1| DNA-directed RNA polymerase, beta subunit [Ruegeria sp. R11] gi|214031461|gb|EEB72296.1| DNA-directed RNA polymerase, beta subunit [Ruegeria sp. R11] Length = 1382 Score = 1706 bits (4417), Expect = 0.0, Method: Composition-based stats. Identities = 838/1379 (60%), Positives = 1072/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++D+P+LIEVQK+SYD FL A EG+ F+SV Sbjct: 5 MAQSFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDAEQPLDGEGIMGVFQSV 64 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV Y F+ PK+DV++C+ RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 65 FPIKDFNETSVLEFVKYSFERPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 124 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 125 KDIKEQDVYMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 184 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + + Sbjct: 185 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVNFKLEK 244 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + LVD TGE E+GKK+T +K + ++G + L + + Sbjct: 245 SRGWVTPFFPERVRGTRPTYDLVDAATGEIFAEAGKKVTPRAVKKMIDEGTITELLVPFE 304 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G YVA+DI+N E G IY+EAGD + + +++E+ + I DIP+L +D+ Sbjct: 305 HIVGKYVAKDIINEENGAIYVEAGDELTLEYDKGGDIIGGTVKELLDAGITDIPVLDIDN 364 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 +N Y+RNT+ DKN R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 365 INVGPYMRNTMAQDKNMGRETALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV 424 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +RKEDI++ IK LV+LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 425 GRVKMNMRLALDAEDTQRTLRKEDIVSCIKALVELRDGKGDIDDIDHLGNRRVRSVGELM 484 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 485 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 544 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 545 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 604 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V +G+VT++V Y+SA EE +AQAN++LDE+G F +LV R +G Sbjct: 605 VNKYGFIETPYRVVKEGQVTDEVHYMSATEEMRHTVAQANATLDENGKFINDLVSTRQSG 664 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 665 DYTLAPNESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 724 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E +VA+ SGAAI+AKRAGI++Q+DA RIVIR+ E L+ +GVDIYR+ KFQRSN Sbjct: 725 GTGIEEIVARDSGAAIMAKRAGIIDQIDAQRIVIRATED-LELGDAGVDIYRMRKFQRSN 783 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVG +VR+ ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 784 QNTCINQRPLVKVGQQVRKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 843 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 844 RIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 903 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 904 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 963 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL +L G+ AV GPKG K +V++ + Sbjct: 964 KDERALQIEREEVERLARDRDDELGILDRNIYARLRGMLLGKTAVKGPKGIKAGSVITEE 1023 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ R QWW A++DE+ + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1024 LLDSLSRGQWWMLALEDEQDAQVVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVM 1083 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1084 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1143 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG K+ + +Y+ +GD++P+R + G + E I+D ++ Sbjct: 1144 NVGQILETHMGWAARGLGIKVDEALQEYRRSGDLTPVREAMHHAYGDDVYDEGIADMSEE 1203 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 +L A GVP++TPVFDGA E+ +N L A D+SGQSIL+DG TGE F RPVTV Sbjct: 1204 DLLEAAGNVTRGVPIATPVFDGAKEDDVNDALVRAGFDQSGQSILFDGRTGEQFARPVTV 1263 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1264 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1323 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1324 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVEE 1382 >gi|126724853|ref|ZP_01740696.1| DNA-directed RNA polymerase subunit beta [Rhodobacterales bacterium HTCC2150] gi|126706017|gb|EBA05107.1| DNA-directed RNA polymerase subunit beta [Rhodobacterales bacterium HTCC2150] Length = 1378 Score = 1705 bits (4415), Expect = 0.0, Method: Composition-based stats. Identities = 832/1379 (60%), Positives = 1063/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + G R+RK++GK E++++P+LIEVQK+SYD FL EG++ F+SV Sbjct: 1 MATTYLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLKSGDQLQPLDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LEFV YE + PK+DV++C RD+TY+ PLK+TLRLIVF++DE TGAKS+ Sbjct: 61 FPIKDFNETAILEFVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFEIDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + Y Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYETVTYKLDK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + + G + + +VD +GE + E+GKK+T +K L ++G V + + D Sbjct: 241 NKGWVTKFFPERVRGTRPTYDIVDAASGEVIAEAGKKVTPRAVKKLIDEGKVSEVLVPFD 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKS----------LEEIFHSEIRDIPILYVDS 351 + G + A+D++N E G IY+EAGD + + L+E+ + +++IPIL +D+ Sbjct: 301 AIIGKFAAKDMINEENGAIYVEAGDELTWELDKAGEVSGGSLKELVDAGVKEIPILDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNT+ DKN R AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 VNVGPYMRNTMAVDKNMGRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRLNLD D +R +R+EDI++ I LV+LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLNLDAEDTMRTLRREDIVSCIGALVNLRDGKGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYRKV G+VT++V Y+SA EE +AQAN+SLDE G F +LV R +G Sbjct: 601 VNKYGFIETPYRKVEKGQVTDEVKYMSATEEMRHTVAQANASLDEKGRFANDLVSTRRSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E L R+ +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+A AP V Sbjct: 661 EYTLAQRDAVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQATAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGAAI+AKRAGI++QVDA RIV+R+ DL+ +GVDIYR+ KFQRSN Sbjct: 721 GTGIEEVVARDSGAAIMAKRAGIIDQVDATRIVVRAT-ADLEMGDAGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVGD V + ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGDVVTKGEVIADGPSTDIGELALGKNVIVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ GPKG K T++ + Sbjct: 960 KDERALQIEREEVESLARDRDDEFAILDRNIYARLQGMIFGKEVAKGPKGVKSGTIVDDE 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ R WWQ A+ DE +NVE+L QYE+ K LE RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLEMVGRHMWWQLAMADESTAQNVEALNTQYESQKRALEARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++SR++P EDMPFL DGT VD VLNPLGVPSRM Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPMEDMPFLADGTSVDFVLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG KI + +Y+ +GD++P+R L+ G + E +++ + Sbjct: 1140 NVGQILETHMGWAARGLGLKIDDALGEYRRSGDVTPVRDALKIAYGENVYDEGLANMQEA 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 +L A +GVP++TPVFDGA E +N L A ESGQS LYDG TGE F R VTV Sbjct: 1200 DLLEAAGNVVNGVPIATPVFDGAKEADVNDALARAGFSESGQSDLYDGRTGEKFSRQVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVDE 1378 >gi|126732286|ref|ZP_01748086.1| DNA-directed RNA polymerase subunit beta [Sagittula stellata E-37] gi|126707155|gb|EBA06221.1| DNA-directed RNA polymerase subunit beta [Sagittula stellata E-37] Length = 1378 Score = 1705 bits (4415), Expect = 0.0, Method: Composition-based stats. Identities = 842/1380 (61%), Positives = 1073/1380 (77%), Gaps = 14/1380 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+R+++GK E++++P+LIEVQK+SY+ FL P EG++ F+SV Sbjct: 1 MAQSFLGQKRLRRYYGKIREVLEMPNLIEVQKSSYELFLKSGDQPKPMDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LEFV Y+ + PK+DV++C+ RD+TYA PLK+TLRLIVFD+DE TGAKS+ Sbjct: 61 FPIKDFNETAVLEFVDYDLEKPKYDVEECMQRDMTYAAPLKVTLRLIVFDIDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS-QR 241 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I +Y + + +R Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAICDAYYNTVNFEYRR 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITS 300 G+ W + G + + LVD DTGE + E+ KK+T +K L ++G VK L + Sbjct: 241 GEGWATKFFPE-RVRGTRPTFDLVDADTGEIIAEATKKVTPRAVKKLIDEGKVKQLLVPF 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKS----------LEEIFHSEIRDIPILYVD 350 + + G YVA+DI+N ETG IY+EAGD + L+E+ + I +IP+L +D Sbjct: 300 EHIVGKYVAKDIINEETGAIYVEAGDELTWTVDKDGEVSGGSLKELLDAGITEIPVLDID 359 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N YIRNT+ DKN R+ ALLDIYRVMRPG+ T A ++F+ LFFDS++YDLS Sbjct: 360 NINVGPYIRNTMEQDKNVSRETALLDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSA 419 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VGRVKMNMRL LD PD R + ++DI+A IK LVDLR+GKG IDDID+LGNRRVRSVGE+ Sbjct: 420 VGRVKMNMRLALDKPDTQRTLDRDDIVACIKALVDLRDGKGDIDDIDHLGNRRVRSVGEL 479 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 ++NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 480 MENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTN 539 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FA Sbjct: 540 PLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFA 599 Query: 591 RVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA 650 RVN YGFIETPYR V DG VT++V Y+SA EE +AQAN+SLDE+G FT E+V R A Sbjct: 600 RVNKYGFIETPYRVVTDGVVTDEVHYMSATEEMRHTVAQANASLDENGKFTNEMVNTRQA 659 Query: 651 GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF 710 G+ L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVP L+AEAP Sbjct: 660 GDYTLAPSETVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPTLRAEAPL 719 Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRS 770 VGTG+E VVA+ SGAA++AKRAGI++QVDA RIVIR+ E L+ +GVDIYR+ KFQRS Sbjct: 720 VGTGIEEVVARDSGAAVMAKRAGIIDQVDAQRIVIRATED-LELGDAGVDIYRMRKFQRS 778 Query: 771 NQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS 830 NQNTC+NQ+PLVKVGD V + ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LIS Sbjct: 779 NQNTCINQKPLVKVGDTVTKGEVIADGPSTDMGELALGKNVIVAFMPWNGYNYEDSILIS 838 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 ER+ +DVFTS+HIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V P Sbjct: 839 ERIAKDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEP 898 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 GDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG+ Sbjct: 899 GDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGV 958 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSS 1010 +K+ER++ +ERE+IE LARD+DDE ILDRNIY+RL ++ G+ AV GPKG + ++ + Sbjct: 959 EKDERALQIEREEIERLARDRDDELAILDRNIYARLKGMILGKTAVKGPKGVRANSEIDE 1018 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 +L+S R QWWQ A+ +E ++VE+L QYE K L+ RF++K+EK++ GDD+PPGV Sbjct: 1019 ELLSTLTRGQWWQLALGEEDDAKHVEALHEQYEIQKRALDARFEDKVEKVRRGDDLPPGV 1078 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +++VKVF+A+KR +Q GDKMAGRHGNKG+VSR++P EDMPFL DGTPVD LNPLGVPSR Sbjct: 1079 MKMVKVFIAVKRKLQPGDKMAGRHGNKGVVSRVVPQEDMPFLSDGTPVDFCLNPLGVPSR 1138 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MNVGQI ETH+GWA LG ++ + +Y+ +GD++P+R L+ V G + E +D D+ Sbjct: 1139 MNVGQILETHMGWASRALGIQVDEALQEYRRSGDLTPVRDALKIVYGDEVYQEGFADVDE 1198 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 +++ +A GVP++TPVFDGA E +N L+ A D SGQS L+DG TGE F R VT Sbjct: 1199 TALVEMAGNVTRGVPIATPVFDGAKEADVNDALKRAGFDTSGQSRLFDGRTGEEFSRKVT 1258 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1259 VGMKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1318 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1319 LQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEDE 1378 >gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] gi|159177916|gb|EDP62465.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] Length = 1392 Score = 1704 bits (4413), Expect = 0.0, Method: Composition-based stats. Identities = 845/1387 (60%), Positives = 1058/1387 (76%), Gaps = 28/1387 (2%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 F G RVRK FG+ E+ +P+LIEVQK+SYD FL M + P++R + GLQ FKSVFPI Sbjct: 8 SFTGRKRVRKNFGRIAEVAPMPNLIEVQKSSYDAFLQMGVEPEKRTDVGLQEVFKSVFPI 67 Query: 66 TAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDI 125 FS AMLEFV YE D PK+DV++C R LT+A PLK+TLRL+V+DVDE TG+KSI+DI Sbjct: 68 RDFSERAMLEFVGYELDEPKYDVEECQQRGLTFAAPLKVTLRLVVWDVDEETGSKSIRDI 127 Query: 126 KEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRII 185 KEQ +YMGD+PLMT GTFVI G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A R+I Sbjct: 128 KEQDVYMGDMPLMTAHGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAARVI 187 Query: 186 PDQGLWMDIEFDSKDIIHVRIDRRRKV-------------PVTSFL------------MA 220 P +G W+D EFD+KD ++VRIDRRRK+ + Sbjct: 188 PYRGSWLDFEFDAKDNVYVRIDRRRKLPATTLLLALMSDDSIKYLAECHRTGEEAHRDRV 247 Query: 221 LGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKL 280 +GM +EEIL+ FY + Y++ G W A L G+K+ LVD DTGE V ++G K+ Sbjct: 248 VGMGAEEILTNFYGTVTYTREGAGWRTSFDAERL-RGSKLVRDLVDADTGEVVAKAGDKI 306 Query: 281 TSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSE 340 T + L E G+K + + + L G YV D+++ TG ++ +AG+ I + LE++ Sbjct: 307 TPRSSRKLIEAGLKDMWVPDEELIGAYVGSDLIDESTGLVHCDAGEEITTELLEKVGGVG 366 Query: 341 IRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLF 400 I +P+L +D +N AY+RNTL DKN R++AL+DIYRVMRPG+ T AE++F+ LF Sbjct: 367 ITLLPVLAIDHLNIGAYMRNTLALDKNATREEALVDIYRVMRPGEPPTLETAEALFHGLF 426 Query: 401 FDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 FDS++YDLS VGRVKMN RL L+T D +R +RK+DI+AI+K+L++L++GKG IDDID+LG Sbjct: 427 FDSERYDLSAVGRVKMNARLGLETDDQLRVLRKDDILAILKVLMELKDGKGEIDDIDHLG 486 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+++NQYR+GLLRMER+I+ER+SSV+ID+VMP DLINAKP +AV EFF SS Sbjct: 487 NRRVRSVGELMENQYRVGLLRMERAIRERMSSVEIDTVMPHDLINAKPAAAAVREFFGSS 546 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS ITH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NI Sbjct: 547 QLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNI 606 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL ++ARVN YGFIETPYRKV D KVT++V Y+SAMEE +AQAN+ +D DG F Sbjct: 607 GLINSLATYARVNQYGFIETPYRKVTDSKVTDEVRYISAMEEGRYTVAQANAPVDADGKF 666 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 EELV R G+ L E ID ID SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQA Sbjct: 667 VEELVPVRKRGDFGLARPEDIDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQA 726 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VPLL+AEAPFVGTGME VA+ SG IVA+R+G+V+QVDA RIVIR+ E L+ ++S VD Sbjct: 727 VPLLQAEAPFVGTGMEGTVARDSGVTIVARRSGVVDQVDAQRIVIRANED-LEGASSNVD 785 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IYRL+KFQRSNQNTC+ QRPLVKVGD V R DII DGPSTDLG+LALGRN+LVAFMPW+G Sbjct: 786 IYRLLKFQRSNQNTCITQRPLVKVGDVVSRGDIIGDGPSTDLGELALGRNVLVAFMPWNG 845 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+LISER+V +DVFTSIHIEEFE+MARDTKLG EEITRDIPNV EE LKN+DE G Sbjct: 846 YNFEDSILISERIVRDDVFTSIHIEEFEIMARDTKLGQEEITRDIPNVGEEALKNLDEAG 905 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ VGAEVNPGDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSL+VP GV+GT+V Sbjct: 906 IVYVGAEVNPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKVPPGVNGTIV 965 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 +VR+F+R G+DK+ERS ++ER +IE LA+D+DDE+ IL+R + RL E+L G+ A +GPK Sbjct: 966 EVRVFSRRGVDKDERSQAIERAEIERLAKDRDDERAILERGFFDRLRELLMGKTATAGPK 1025 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 GFK VL+ ++ ++Y QW QF D+K+ +E LK ++ S L+ RF NK+EK+ Sbjct: 1026 GFKAG-VLTPEVFAQYTPGQWRQFVSDDDKLMDYLEGLKEHFDRSIDFLKARFDNKVEKL 1084 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG++S+I P EDMP+L DGT VDI Sbjct: 1085 QRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLDDGTAVDI 1144 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMNVGQI ETHLGWA GLG++I+ ++ N + LR LE V Sbjct: 1145 VLNPLGVPSRMNVGQILETHLGWAAAGLGRQIRQMLESMGENPKVPELRVKLENVYSADQ 1204 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGL 1240 ++ DD V+ +A GVP++TPVFDGA E+ I ML A L+ SGQ L+DG Sbjct: 1205 FNAEVKPLGDDEVVELARNLTRGVPMATPVFDGAREDDIVDMLGRAGLNSSGQVDLWDGR 1264 Query: 1241 TGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVW 1300 +GE FDR VTVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1265 SGEQFDRQVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1324 Query: 1301 CIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLS 1360 ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV G+D FE G PESFNVLVKE+++LGL+ Sbjct: 1325 ALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDNFEAGIPESFNVLVKELRSLGLN 1384 Query: 1361 IDLENSR 1367 ++L Sbjct: 1385 VELNQEE 1391 >gi|146308930|ref|YP_001189395.1| DNA-directed RNA polymerase subunit beta [Pseudomonas mendocina ymp] gi|166229298|sp|A4XZ97|RPOB_PSEMY RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|145577131|gb|ABP86663.1| DNA-directed RNA polymerase subunit beta [Pseudomonas mendocina ymp] Length = 1357 Score = 1704 bits (4412), Expect = 0.0, Method: Composition-based stats. Identities = 722/1365 (52%), Positives = 988/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL ++ ++ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQQGVSKEQFRDIGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L FY V+ + Sbjct: 179 RIIPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALGYSTEEVLDAFYDTNVFHVKN 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D +G+ ++E G+++T+ + L + G+K L + D Sbjct: 239 ESLSLELVPQRL-RGEVAVLDIKDA-SGKVIVEQGRRITARHINQLDKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E + L ++ + + LY + ++ +I +TL Sbjct: 297 VIGRTTAKAIVHPATGEIIAECNTELTADLLAKMAKANVVRFETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDSTTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLSKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +GKVT+++V+LSA+EE + IAQA+++L++ G +ELV R E + E + Sbjct: 597 RVVKEGKVTDEIVFLSAIEEADHVIAQASATLNDKGELVDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD+V R DI+ADGPSTD+G+LALG+NM VAFMPW+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDQVARGDIMADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEI+ DIPNV E L +DE GI+ VGAEV PGDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEISSDIPNVGEAALNKLDEAGIVYVGAEVGPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++++E++ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKQ 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G A G G KK T ++ + + R QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGAIAEGG-AGLKKGTAITDEFLDGLERGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + D+ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMADDALNEQLEKAQAYISDRRQMLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + ++ D+ +L +A+ K Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLAEIYNEIGGRQENLDEFSDNEILELAKNLK 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++T VFDGA E I +ML++ADL ESGQ L+DG TG F+RP TVGY+YMLKLNH Sbjct: 1193 GGVPMATAVFDGAKETEIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|330505214|ref|YP_004382083.1| DNA-directed RNA polymerase subunit beta [Pseudomonas mendocina NK-01] gi|328919500|gb|AEB60331.1| DNA-directed RNA polymerase subunit beta [Pseudomonas mendocina NK-01] Length = 1357 Score = 1703 bits (4411), Expect = 0.0, Method: Composition-based stats. Identities = 722/1365 (52%), Positives = 989/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL ++ ++ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQQGVSKEQFRDIGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L FY VY + Sbjct: 179 RIIPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALGYSTEEVLDAFYDTNVYHVKN 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D +G+ ++E G+++T+ + L + G+K L + D Sbjct: 239 ESLSLELVPQRL-RGEVAVLDIKDA-SGKVIVEQGRRITARHINQLDKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E + L ++ +++ LY + ++ +I +TL Sbjct: 297 VIGRTTAKAIVHPATGEIIAECNTELTADLLVKMAKAQVVRFETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDSTTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLSKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G+VT+++V+LSA+EE + IAQA+++L++ G +ELV R E + E + Sbjct: 597 RVVKEGQVTDEIVFLSAIEEADHVIAQASATLNDKGQLIDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD+V R DI+ADGPSTD+G+LALG+NM VAFMPW+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDQVSRGDIMADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEI+ DIPNV E L +DE GI+ VGAEV PGDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEISSDIPNVGEAALNKLDEAGIVYVGAEVGPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++++E++ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKQ 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G A G G KK T ++ + + R QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGAIAEGG-AGLKKGTAITDEFLDGLERGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + D+ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMADDALNEQLEKAQAYISDRRQMLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + ++ D+ +L +A+ K Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLAEIYNEIGGRQENLDEFSDNEILELAKNLK 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++T VFDGA E I +ML++ADL ESGQ L+DG TG F+RP TVGY+YMLKLNH Sbjct: 1193 GGVPMATAVFDGAKETEIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|254487096|ref|ZP_05100301.1| DNA-directed RNA polymerase, beta subunit [Roseobacter sp. GAI101] gi|214043965|gb|EEB84603.1| DNA-directed RNA polymerase, beta subunit [Roseobacter sp. GAI101] Length = 1378 Score = 1702 bits (4409), Expect = 0.0, Method: Composition-based stats. Identities = 837/1380 (60%), Positives = 1066/1380 (77%), Gaps = 14/1380 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL A +G+Q F+SV Sbjct: 1 MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDAETPTDGDGIQGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LE+V YE + PK+DV++C RD+TYA PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETSVLEYVKYELEKPKYDVEECQQRDMTYAAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR- 241 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + Y+ + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYDTVTYTLKA 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITS 300 G+ W P D + G + + L+D TGE + E GKK+T +K L ++G V L + Sbjct: 241 GEGWVAPFYP-DRVRGTRPTYDLIDAATGEVLFEKGKKVTPRAVKQLVDEGKVSELVLPF 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVD 350 + + G + A DI+N ETG IY+EAGD + + + +E+ + I +IP+L +D Sbjct: 300 EHIVGKFAARDIINEETGAIYVEAGDEMTLEYDKDGTLIGGTAKELVDAGITEIPLLDID 359 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N Y+RNT+ DKN +R AL+DIYRVMRPG+ T A ++F+ LFFD ++YDLS Sbjct: 360 NINVGPYMRNTMAMDKNMNRDTALMDIYRVMRPGEPPTVEAASNLFDTLFFDGERYDLSA 419 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VGRVKMNMRL LD D R + ++DI++ IK LVDLR+G+G IDDID+LGNRRVRSVGE+ Sbjct: 420 VGRVKMNMRLALDKEDTQRTLDRDDIVSCIKALVDLRDGRGDIDDIDHLGNRRVRSVGEL 479 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 ++NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 480 MENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTN 539 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FA Sbjct: 540 PLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFA 599 Query: 591 RVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA 650 RVN YGFIETPYRKV +G V++DV Y+SA EE +AQAN++LDE+ F +LV R + Sbjct: 600 RVNKYGFIETPYRKVSNGVVSDDVQYMSATEEMRHTVAQANANLDENMKFVNDLVSTRKS 659 Query: 651 GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF 710 G+ L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP Sbjct: 660 GDYTLSPSENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPL 719 Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRS 770 VGTG+E VVA+ SGAA +AKR GI++QVDA RIV+R+ E L+ +GVDIYR+ KFQRS Sbjct: 720 VGTGIEEVVARDSGAAYMAKRGGIIDQVDASRIVLRATED-LELGDAGVDIYRMRKFQRS 778 Query: 771 NQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS 830 NQNTC+NQRPLVKVGD V + +IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LIS Sbjct: 779 NQNTCINQRPLVKVGDTVVKGQVIADGPSTDMGELALGKNVIVAFMPWNGYNYEDSILIS 838 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 ER+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V P Sbjct: 839 ERVSRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEP 898 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 GDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG+ Sbjct: 899 GDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGV 958 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSS 1010 +K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ AV GPKG K ++ ++ Sbjct: 959 EKDERALQIEREEVERLARDRDDELGILDRNIYARLQSMIIGKTAVKGPKGVKSNSEITE 1018 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 DL++ R QWWQ A+ DE + VE+L QYE K L+ RF++K+EK++ GDD+PPGV Sbjct: 1019 DLLATLSRGQWWQLALADEDDAKIVEALNEQYEIQKRTLDARFEDKVEKVRRGDDLPPGV 1078 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSR Sbjct: 1079 MKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSR 1138 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MNVGQI ETH+GWA GLG I + +YK +GD++P+R + G + E I+ D+ Sbjct: 1139 MNVGQILETHMGWAARGLGINIDEALQEYKRSGDLTPVREAMSHAYGEDVYEEGIAGMDE 1198 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 ++L VA GVP++TPVFDGA E +N L A D SGQS+L+DG TGE F RPVT Sbjct: 1199 ATLLEVAGNVTRGVPIATPVFDGAKEADVNDSLTRAGFDTSGQSVLFDGRTGEQFARPVT 1258 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1259 VGVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1318 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1319 LQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGIPESFNVLVKEVRGLGLNMELLDAEEDE 1378 >gi|254438477|ref|ZP_05051971.1| DNA-directed RNA polymerase, beta subunit [Octadecabacter antarcticus 307] gi|198253923|gb|EDY78237.1| DNA-directed RNA polymerase, beta subunit [Octadecabacter antarcticus 307] Length = 1380 Score = 1702 bits (4407), Expect = 0.0, Method: Composition-based stats. Identities = 830/1382 (60%), Positives = 1064/1382 (76%), Gaps = 15/1382 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL + EG++ F+SV Sbjct: 1 MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDSDTPLDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV YE + PK+DV++C RD+TYA PLK+TLRLIVFD+D+ TG KS+ Sbjct: 61 FPIKDFNETSVLEFVKYELEKPKYDVEECQQRDMTYAAPLKVTLRLIVFDMDDDTGTKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ RIDRRRK+PVT+ L ALG+D E I++ +Y + Y+ Sbjct: 181 RIIPYRGSWLDFEFDAKDLVFCRIDRRRKLPVTTLLYALGLDQETIMNAYYDHVDYTFDK 240 Query: 243 D--FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGIT 299 W + G + LVD TGE + E+GKK+T +K+L ++G VK L + Sbjct: 241 KANGWKTKFFPE-RVRGTRPVFDLVDAKTGEVIAEAGKKVTPRAVKALIDEGNVKDLLVP 299 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKS----------LEEIFHSEIRDIPILYV 349 + + G + A DI+N ETG IY+EAGD + + L+E+ + I+ IP+L + Sbjct: 300 YEQILGKFAANDIINEETGAIYVEAGDELTLEMDKAGDVIGGTLKELVDAGIKTIPVLDI 359 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D++N Y+RNT+ DKN R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS Sbjct: 360 DNINVGPYMRNTMAADKNMGRETALMDIYRVMRPGEPPTVDAASNLFDSLFFDSERYDLS 419 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 VGRVKMNMRL LD D +R +RKEDI++ IK LV LR+GKG IDDID+LGNRRVRSVGE Sbjct: 420 AVGRVKMNMRLALDAEDTIRTLRKEDIVSCIKALVMLRDGKGDIDDIDHLGNRRVRSVGE 479 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +++NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + Sbjct: 480 LMENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQT 539 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +F Sbjct: 540 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATF 599 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 ARVN YGFIETPYR V DG VT++V Y+SA EE +AQAN++LDE+ F +LV R Sbjct: 600 ARVNKYGFIETPYRVVTDGVVTDEVHYMSATEEMRHTVAQANANLDENMRFVNDLVSTRQ 659 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 GE L P E ++ ID SPKQ+VS+AASLIPFLENDD+NR LMG NM RQAVPLL+AEAP Sbjct: 660 NGEYTLAPSENVNLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQAVPLLQAEAP 719 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 VGTG+E VVA+ SGAAI+AKRAGI++QVDA RIV+R+ L+ GVDIYR+ KFQR Sbjct: 720 LVGTGIEEVVARDSGAAIMAKRAGIIDQVDATRIVVRATSD-LEIGDPGVDIYRMRKFQR 778 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 SNQNTC+NQRPLVKVGD V + ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LI Sbjct: 779 SNQNTCINQRPLVKVGDTVLKGEVIADGPSTDIGELALGKNVIVAFMPWNGYNYEDSILI 838 Query: 830 SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 SER+ +DVFTSIHI+EFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV Sbjct: 839 SERITRDDVFTSIHIDEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVE 898 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 PGDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG Sbjct: 899 PGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHG 958 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 ++K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ GPKG K ++ Sbjct: 959 VEKDERALQIEREEVERLARDRDDEMTILDRNIYARLRSMIEGKTVAKGPKGIKTGAIID 1018 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + ++ + PRS WWQ A+++E + VE+L QYE +K +L+ RF++K+EK++ GDD+PPG Sbjct: 1019 AAMLDDMPRSHWWQIALKEEGDAQIVEALNEQYEAAKKLLDARFEDKVEKVRRGDDLPPG 1078 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V+++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPS Sbjct: 1079 VMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPS 1138 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYD 1189 RMNVGQI ETH+GWA GLG +I + Y+ +GD++P+R ++ G + E I+D Sbjct: 1139 RMNVGQILETHMGWAARGLGIEIDEALGAYRRSGDLTPVREAMKIAYGDDVYDEGIADMT 1198 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 +D ++ A GVP++TPVFDGA E +N L A D SGQSIL+DG TGE F R V Sbjct: 1199 EDELVEAAGNVTHGVPIATPVFDGAKEADVNDSLTRAGFDTSGQSILFDGRTGEQFSRKV 1258 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TVG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1259 TVGVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1318 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 LQEMLT+KSDDV GRT+VYESIV G D +E G PESFNVLVKE++ LGL+++L ++ Sbjct: 1319 TLQEMLTVKSDDVAGRTKVYESIVKGEDNYEAGIPESFNVLVKEVRGLGLNMELLDAEED 1378 Query: 1370 NS 1371 + Sbjct: 1379 DE 1380 >gi|119383499|ref|YP_914555.1| DNA-directed RNA polymerase subunit beta [Paracoccus denitrificans PD1222] gi|158512586|sp|A1B015|RPOB_PARDP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|119373266|gb|ABL68859.1| DNA-directed RNA polymerase subunit beta [Paracoccus denitrificans PD1222] Length = 1382 Score = 1701 bits (4406), Expect = 0.0, Method: Composition-based stats. Identities = 850/1386 (61%), Positives = 1074/1386 (77%), Gaps = 20/1386 (1%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ V G R+R+++G E++++P+LIEVQK+SYD FL A + EG+Q F+ Sbjct: 1 MAQAYV--GQKRIRRYYGNIREVLEMPNLIEVQKSSYDLFLRSGDAEGHQDGEGIQGVFQ 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI F+ A LEFV YE + PK+DV++C RD+TYA PLK+TLRLIVFDVDE TGAK Sbjct: 59 SVFPIKDFNETATLEFVKYELEKPKYDVEECQSRDMTYAAPLKVTLRLIVFDVDETTGAK 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT++GTF++ G +R+VVSQ+HRSPG+ FDHD+G+ SGKLL+ Sbjct: 119 SVKDIKEQDVYMGDMPLMTQNGTFIVNGTERVVVSQMHRSPGVFFDHDRGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIP +G W+D EFD+KD++ RIDRRRK+PVT+ L ALGMD E I+ FY + Y Sbjct: 179 ACRIIPYRGSWLDFEFDAKDLVFARIDRRRKLPVTTLLYALGMDQEGIMDAFYNTVDYKL 238 Query: 241 RGDF------WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 + W + G + S LV+ +TGE + ++G K+T L+K L EKG Sbjct: 239 QRAGKGQAAGWVTKFFPE-RVRGTRPSFDLVNAETGEIITKAGDKVTPRLVKQLAEKGDI 297 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDI 344 L + + + G +VA+DI+N +TG IY EAGD I + L+ + + I DI Sbjct: 298 NLLLPFEKIVGRFVAKDIINEQTGLIYAEAGDEITVEYDRDGEISGGLLKVLLDNGIEDI 357 Query: 345 PILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSD 404 P+L +D VN YIRNT+ DKN R AL+DIYRVMRPG+ T A ++F+ LFFDS+ Sbjct: 358 PVLDIDHVNVGPYIRNTMAADKNMSRDGALMDIYRVMRPGEPPTVEAASALFDSLFFDSE 417 Query: 405 KYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRV 464 +YDLS VGRVKMNMRL+LD PD R +RKEDIIA I+ LV+LR+GKG IDDID+LGNRRV Sbjct: 418 RYDLSAVGRVKMNMRLDLDAPDTQRTLRKEDIIACIRGLVELRDGKGEIDDIDHLGNRRV 477 Query: 465 RSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQ 524 RSVGE+++NQYR+GLLRMER+I+ER+S V+ID+VMPQDLINAKP +AV EFF SSQLSQ Sbjct: 478 RSVGELMENQYRIGLLRMERAIRERMSGVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQ 537 Query: 525 LEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + N LS +T RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++ Sbjct: 538 FMDQTNPLSEVTDKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGQNIGLIN 597 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 SL +FARVN YGFIETPYRKV +GKVT++VVY+SA EE IAQAN++LDE G F +EL Sbjct: 598 SLATFARVNKYGFIETPYRKVVEGKVTDEVVYMSATEEMRHTIAQANATLDESGKFVDEL 657 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLL 704 V R AG+ +L P E +D ID SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL Sbjct: 658 VSTRQAGDFMLNPVEAVDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLL 717 Query: 705 KAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRL 764 +AEAPFVGTGME+ VA+ SGAAI+A+R GI++QVDA RIVIR+ E L +GVDIYRL Sbjct: 718 RAEAPFVGTGMEATVARDSGAAIMARRGGIIDQVDAQRIVIRATED-LGAGDAGVDIYRL 776 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 KF+RSNQ++ +NQRPLVKVGD+V + ++ADGPSTD G+LA+GRN++VAFMPW+GYN+E Sbjct: 777 RKFKRSNQSSTINQRPLVKVGDKVVKGQVVADGPSTDQGELAIGRNVVVAFMPWNGYNYE 836 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 DS+LISER+ +DVFTSIHI+E+EV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ + Sbjct: 837 DSILISERIHRDDVFTSIHIDEYEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYI 896 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 GAEV PGDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G GT+V+VR+ Sbjct: 897 GAEVGPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGAYGTIVEVRV 956 Query: 945 FNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKK 1004 FNRHG+DK+ER++ +ERE++E LARD+DDE IL+RNIY+RL ++ G+ V GPKG + Sbjct: 957 FNRHGVDKDERALQIEREEVERLARDRDDELAILERNIYARLKSLIMGKEVVKGPKGIRA 1016 Query: 1005 STVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD 1064 V+ DL+ + R QWWQ AV DE + VE+L Q++ K L++RF +K+EK++ GD Sbjct: 1017 GAVVDEDLLGQLSRGQWWQLAVADEDTAKEVEALNQQFDAQKRALDNRFDDKVEKVRQGD 1076 Query: 1065 DMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNP 1124 D+PPGV+++VKVFVA+KR +Q+GDKMAGRHGNKG+VS+++P EDMPFL DGTPVD+V NP Sbjct: 1077 DLPPGVMKMVKVFVAVKRKLQAGDKMAGRHGNKGVVSKVVPIEDMPFLSDGTPVDLVFNP 1136 Query: 1125 LGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEK 1184 LGVPSRMNVGQI ETH+GWA GLG KI + DY+ NGD++P+R ++ G + E Sbjct: 1137 LGVPSRMNVGQILETHMGWASRGLGIKIDEALQDYRRNGDMTPVREAMQNGYGDDFYAET 1196 Query: 1185 ISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 +D+++L A+ + GVP+STPVFDGA E IN LR A D SGQSI++DG TGE Sbjct: 1197 FEGMEDETLLEHADAVRGGVPISTPVFDGAKEADINDALRRAGFDTSGQSIVFDGRTGEQ 1256 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 F RPVTVG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++A Sbjct: 1257 FARPVTVGMKYVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEA 1316 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAAY LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L Sbjct: 1317 YGAAYTLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELL 1376 Query: 1365 NSRTKN 1370 ++ + Sbjct: 1377 DAEDEE 1382 >gi|163740213|ref|ZP_02147607.1| DNA-directed RNA polymerase subunit beta [Phaeobacter gallaeciensis 2.10] gi|161386071|gb|EDQ10446.1| DNA-directed RNA polymerase subunit beta [Phaeobacter gallaeciensis 2.10] Length = 1378 Score = 1701 bits (4406), Expect = 0.0, Method: Composition-based stats. Identities = 839/1379 (60%), Positives = 1065/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++D+P+LIEVQK+SYD FL A EG+ F+SV Sbjct: 1 MAQSFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDAEQPLDGEGIMGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV Y F+ PK+DV++C+ RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETSVLEFVKYSFERPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVYMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVNFKLEK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + LVD TGE E+GKK+T +K + ++G + L + + Sbjct: 241 SRGWVTPFFPERVRGTRPTYDLVDAATGEIFAEAGKKVTPRAVKKMIDEGNITDLLVPFE 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA+DI+N E G IY+EAGD + + +++E+ + I DIP+L +D+ Sbjct: 301 HIVGKFVAKDIINEENGAIYVEAGDELTLEYDKGGELIGGTVKELIDAGITDIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 +N Y+RNT+ DKN R AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 INVGPYMRNTMAQDKNMGRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +RKEDII+ IK LV+LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALDAEDTQRTLRKEDIISCIKALVELRDGKGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V D KVT++V Y+SA EE +AQAN++LDEDG F +LV R +G Sbjct: 601 VNKYGFIETPYRVVNDAKVTDEVHYMSATEEMRHTVAQANATLDEDGKFINDLVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L PRE +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 DYTLAPRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E +VA+ SGAAI+AKR GI++Q+DA RIVIR+ L+ +GVDIYR+ KFQRSN Sbjct: 721 GTGIEEIVARDSGAAIMAKRGGIIDQIDAQRIVIRATSD-LEMGDAGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVG EVR+ ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGQEVRKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL +L G+ AV GPKG + + ++ + Sbjct: 960 KDERALQIEREEVERLARDRDDEMGILDRNIYARLRGMLLGKTAVKGPKGIRAGSEITEE 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ R QWW A++DE+ + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLDTLSRGQWWMLALEDEQSAQVVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG KI + DY+ +GD++P+R + G + E I+D + Sbjct: 1140 NVGQILETHMGWAARGLGIKIDDALQDYRRSGDLTPVREAMHHAYGDDVYGEGIADMTET 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 ++ A GVP++TPVFDGA E +N L A D SGQSIL+DG TGE F RPVTV Sbjct: 1200 DLVEAAGNVTRGVPIATPVFDGAKEADVNDSLVRAGFDTSGQSILFDGRTGEQFARPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEGEE 1378 >gi|255262039|ref|ZP_05341381.1| DNA-directed RNA polymerase, beta subunit [Thalassiobium sp. R2A62] gi|255104374|gb|EET47048.1| DNA-directed RNA polymerase, beta subunit [Thalassiobium sp. R2A62] Length = 1378 Score = 1701 bits (4405), Expect = 0.0, Method: Composition-based stats. Identities = 839/1379 (60%), Positives = 1071/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LI+VQKASY+ FL EG++ F+SV Sbjct: 1 MAQSFLGQKRLRKYYGKIREVLEMPNLIQVQKASYELFLKSGDQLAPLDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LEFV YE + PK+DV++C+ RD+TY+ PLK+TLRLIVFD+DE TGAKS+ Sbjct: 61 FPIKDFNETAVLEFVKYELEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDIDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ RIDRRRK+PVT+ L ALG+D E I+ +Y + YS + Sbjct: 181 RIIPYRGSWLDFEFDAKDLVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVDYSYQK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + + G + LVD TGE + E+GKK+T +K L ++G V L + D Sbjct: 241 NKGWVTKFFPERVRGTRPIYDLVDAKTGEVIAEAGKKVTPRAVKKLIDEGAVTELLLPYD 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKS----------LEEIFHSEIRDIPILYVDS 351 + G +VA+DI+N E G IY+EAGD + + L+E+ +++ IP+L +D+ Sbjct: 301 QIVGKFVAKDIINEENGAIYVEAGDELTLEMDKDGEVIGGSLKELVDNDVTTIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNT+ DKN R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 VNVGPYMRNTMANDKNMSRETALMDIYRVMRPGEPPTVDAASTLFDSLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +RKEDI++ IK LVDLR+G+G IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALDAEDTQRTLRKEDIVSCIKALVDLRDGRGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYRKV +G VT++V Y+SA EE +AQAN++LDE+G F ELV R +G Sbjct: 601 VNKYGFIETPYRKVENGVVTDEVQYMSATEEMRHTVAQANANLDENGKFVNELVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + +L E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 DYMLAASESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGAAI+AKRAGI++QVDA RIV+R+ L+ GVDIYR+ KFQRSN Sbjct: 721 GTGIEEVVARDSGAAIMAKRAGIIDQVDAARIVVRATHD-LEVGDPGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVGD V++ ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGDTVQKGEVIADGPSTDIGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV P Sbjct: 840 RITRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPA 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G GT+V+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDFGTIVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL + L G+ AV GPKG K +T + +D Sbjct: 960 KDERALQIEREEVERLARDRDDEMAILDRNIYARLRDQLMGKVAVKGPKGMKANTTVDAD 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ E PRS WW FA+++E + VE++ QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLEETPRSHWWMFALKEEGDAQIVEAMNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD VLNPLGVPSRM Sbjct: 1080 KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFVLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG +I + +++ +GD++P+R ++ G + E I+ D Sbjct: 1140 NVGQILETHMGWAARGLGIQIDDALGEFRRSGDLTPVRDAMKIAYGDDVYDEGIAGMDKG 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 +L A GVP++TPVFDGA E +N L A ESGQS+L+DG TGE F RPVTV Sbjct: 1200 QLLEAAGNVARGVPIATPVFDGAKEADVNDALVRAGFSESGQSVLFDGRTGEQFARPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDTVEDE 1378 >gi|163739425|ref|ZP_02146835.1| DNA-directed RNA polymerase subunit beta [Phaeobacter gallaeciensis BS107] gi|161387178|gb|EDQ11537.1| DNA-directed RNA polymerase subunit beta [Phaeobacter gallaeciensis BS107] Length = 1378 Score = 1701 bits (4405), Expect = 0.0, Method: Composition-based stats. Identities = 839/1379 (60%), Positives = 1065/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++D+P+LIEVQK+SYD FL A EG+ F+SV Sbjct: 1 MAQSFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDAEQPLDGEGIMGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV Y F+ PK+DV++C+ RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETSVLEFVKYSFERPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVYMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVNFKLEK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + LVD TGE E+GKK+T +K + ++G + L + + Sbjct: 241 SRGWVTPFFPERVRGTRPTYDLVDAATGEIFAEAGKKVTPRAVKKMIDEGNITDLLVPFE 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA+DI+N E G IY+EAGD + + +++E+ + I DIP+L +D+ Sbjct: 301 HIVGKFVAKDIINEENGAIYVEAGDELTLEYDKGGELIGGTVKELIDAGITDIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 +N Y+RNT+ DKN R AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 INVGPYMRNTMAQDKNMGRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +RKEDII+ IK LV+LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALDAEDTQRTLRKEDIISCIKALVELRDGKGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V D KVT++V Y+SA EE +AQAN++LDEDG F +LV R +G Sbjct: 601 VNKYGFIETPYRVVNDAKVTDEVHYMSATEEMRHTVAQANATLDEDGKFINDLVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L PRE +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 DYTLAPRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E +VA+ SGAAI+AKR GI++Q+DA RIVIR+ L+ +GVDIYR+ KFQRSN Sbjct: 721 GTGIEEIVARDSGAAIMAKRGGIIDQIDAQRIVIRATSD-LEMGDAGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVG EVR+ ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGQEVRKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL +L G+ AV GPKG + + ++ + Sbjct: 960 KDERALQIEREEVERLARDRDDEMGILDRNIYARLRGMLLGKTAVKGPKGIRSGSEITEE 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ R QWW A++DE+ + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLETLSRGQWWMLALEDEQSAQVVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG KI + DY+ +GD++P+R + G + E I+D + Sbjct: 1140 NVGQILETHMGWAARGLGIKIDDALQDYRRSGDLTPVREAMHHAYGDDVYGEGIADMTET 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 ++ A GVP++TPVFDGA E +N L A D SGQSIL+DG TGE F RPVTV Sbjct: 1200 DLVEAAGNVTRGVPIATPVFDGAKEADVNDSLVRAGFDTSGQSILFDGRTGEQFARPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEGEE 1378 >gi|83854989|ref|ZP_00948519.1| DNA-directed RNA polymerase beta subunit [Sulfitobacter sp. NAS-14.1] gi|83941511|ref|ZP_00953973.1| DNA-directed RNA polymerase beta subunit [Sulfitobacter sp. EE-36] gi|83842832|gb|EAP81999.1| DNA-directed RNA polymerase beta subunit [Sulfitobacter sp. NAS-14.1] gi|83847331|gb|EAP85206.1| DNA-directed RNA polymerase beta subunit [Sulfitobacter sp. EE-36] Length = 1378 Score = 1701 bits (4405), Expect = 0.0, Method: Composition-based stats. Identities = 839/1380 (60%), Positives = 1067/1380 (77%), Gaps = 14/1380 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL A +G+Q F+SV Sbjct: 1 MAQTFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDAETPTDGDGIQGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LE+V YE + PK+DV++C RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETSVLEYVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR- 241 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I++ +Y + Y+ + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMNAYYNTVNYTLKD 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITS 300 G+ W P D + G + S LVD TGE + E GKK+T +K L ++G V L + Sbjct: 241 GEGWVAPFFP-DRVRGTRPSYDLVDAATGEILFEKGKKVTPRAVKQLIDEGKVTELLLPF 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKS----------LEEIFHSEIRDIPILYVD 350 + G + A DI+N ETG IY+EAGD + + +E+ + I +IP+L +D Sbjct: 300 GHIAGKFAARDIINEETGAIYVEAGDELTLEHDKDGTLIGGTAKELIDAGITEIPLLDID 359 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N Y+RNT+ DKN +R AL+DIYRVMRPG+ T A ++F+ LFFD+D+YDLS Sbjct: 360 NINVGPYMRNTMAADKNMNRDTALMDIYRVMRPGEPPTVEAASNLFDTLFFDADRYDLSA 419 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VGRVKMNMRL LD D R + ++DI+A IK LVDLR+G+G IDDID+LGNRRVRSVGE+ Sbjct: 420 VGRVKMNMRLALDKEDTQRTLDRDDIVACIKALVDLRDGRGDIDDIDHLGNRRVRSVGEL 479 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 ++NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 480 MENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTN 539 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +FA Sbjct: 540 PLSEVTHKRRLSALGPGGLTRERAGFEVRDVHATHYGRMCPIETPEGPNIGLINSLATFA 599 Query: 591 RVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA 650 RVN YGFIETPYRKV +G V++DV Y+SA EE +AQAN++LDE+ F +LV R + Sbjct: 600 RVNKYGFIETPYRKVTNGVVSDDVQYMSATEEMRHTVAQANANLDENMKFVNDLVSTRKS 659 Query: 651 GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF 710 G+ L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP Sbjct: 660 GDYTLSPSENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPL 719 Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRS 770 VGTG+E VVA+ SGAA +AKR GI++QVDA RIVIR+ E L+ +GVDIYR+ KFQRS Sbjct: 720 VGTGIEEVVARDSGAAYMAKRGGIIDQVDASRIVIRATED-LELGDAGVDIYRMRKFQRS 778 Query: 771 NQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS 830 NQNTC+NQRPLVKVG+ V++ +IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LIS Sbjct: 779 NQNTCINQRPLVKVGETVQKGQVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILIS 838 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 ER+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V P Sbjct: 839 ERVSRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEP 898 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 GDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG+ Sbjct: 899 GDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGV 958 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSS 1010 +K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ AV GPKG K ++ ++ Sbjct: 959 EKDERALQIEREEVERLARDRDDELGILDRNIYARLQSMIIGKTAVKGPKGVKANSEITE 1018 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 DL++ R QWWQ A+ DE + VE+L QYE K L+ RF++K+EK++ GDD+PPGV Sbjct: 1019 DLLASLSRGQWWQLALADEDDAKIVEALNEQYEIQKRTLDARFEDKVEKVRRGDDLPPGV 1078 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSR Sbjct: 1079 MKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSR 1138 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MNVGQI ETH+GWA GLG I + +YK +GD++P+R + G + E IS D+ Sbjct: 1139 MNVGQILETHMGWAARGLGINIDEALQEYKRSGDLTPVREAMHHAYGDDVYEEGISGMDE 1198 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 +++L A+ GVP++TPVFDGA E +N L A D SGQS+L+DG TGE F RPVT Sbjct: 1199 ETLLDAAKNVARGVPIATPVFDGAKEADVNDSLTRAGFDSSGQSVLFDGRTGEQFARPVT 1258 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1259 VGVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1318 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1319 LQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGIPESFNVLVKEVRGLGLNMELLDAEEDE 1378 >gi|310817018|ref|YP_003964982.1| DNA-directed RNA polymerase, beta subunit [Ketogulonicigenium vulgare Y25] gi|308755753|gb|ADO43682.1| DNA-directed RNA polymerase, beta subunit [Ketogulonicigenium vulgare Y25] Length = 1381 Score = 1701 bits (4404), Expect = 0.0, Method: Composition-based stats. Identities = 839/1382 (60%), Positives = 1062/1382 (76%), Gaps = 17/1382 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK +GK E++++P+LIEVQK+SYD FL A + EG+Q F+SV Sbjct: 1 MAQSFLGQKRLRKSYGKIREVLEMPNLIEVQKSSYDLFLKSGDADKPQDGEGIQGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LEFV YE + PK+DV++C RD+TY+ LK+TLRLIVFD+ E TG +S+ Sbjct: 61 FPIKDFNDTAVLEFVKYELEKPKYDVEECQARDMTYSAQLKVTLRLIVFDISEDTGMRSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT++GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVYMGDIPLMTQNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR- 241 RIIP +G W+D EFD+KD++ RIDRRRK+PVT+ L ALGMD E I+ +Y + Y Sbjct: 181 RIIPYRGSWLDFEFDAKDLVFARIDRRRKLPVTTLLYALGMDQEGIMDAYYDTVEYRLEA 240 Query: 242 -GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGIT 299 W + G + + LVD +GE ++E+G+K T ++K ++G V L + Sbjct: 241 KSKGWITKFFPE-RVRGTRPTYDLVDAASGEVILEAGEKATPRMVKKWIDEGKVTDLLVP 299 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYV 349 + + G +VA+DI+N + G IY+EAGD + + SL+E+ + +P+L + Sbjct: 300 FEHILGKFVAKDIINEDNGAIYVEAGDELLLERNRDGEITGGSLQELLEAGFTTVPVLDI 359 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D+VN AYIRNT+ DKN R+ AL+DIYRVMRPG+ T A +F LFFDS++YDLS Sbjct: 360 DNVNVGAYIRNTMAADKNMGREGALMDIYRVMRPGEPPTVEAASDLFETLFFDSERYDLS 419 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 VGRVKMNMRL+LD D VR +R++DII+ IK LV+LR+GKG IDDID+LGNRRVRSVGE Sbjct: 420 AVGRVKMNMRLDLDVADTVRTLRRDDIISCIKALVELRDGKGEIDDIDHLGNRRVRSVGE 479 Query: 470 MLKNQYRLGLLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEE 527 +++NQYR+GLLRMER+IKER+S + ID+ MPQDLINAKP +AV EFF SSQLSQ + Sbjct: 480 LMENQYRVGLLRMERAIKERMSSGTPAIDTAMPQDLINAKPAAAAVREFFGSSQLSQFMD 539 Query: 528 HVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL Sbjct: 540 QTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLA 599 Query: 588 SFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 ++ARVN YGFIETPYRKV +GKVT+DV Y+SA EE IAQAN+ LD++G F +ELV Sbjct: 600 TYARVNKYGFIETPYRKVVEGKVTDDVQYMSATEEMRHTIAQANAILDDEGRFVDELVDT 659 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R AG+ L RE +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AE Sbjct: 660 RQAGDYTLATRETVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAE 719 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 AP +GTG+ESVVA+ SGAAI+A+RAG+V+QVDA R+VIR+ E +GVDIYRL KF Sbjct: 720 APLIGTGIESVVARDSGAAIMARRAGVVDQVDAQRVVIRATEDLSL-GDAGVDIYRLRKF 778 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 QRSNQ+TC+NQRPLVKVGD V + ++IADGPST++G+LALG+N++VAFMPW+GYN+EDS+ Sbjct: 779 QRSNQDTCINQRPLVKVGDLVGKGEVIADGPSTEMGELALGKNIVVAFMPWNGYNYEDSI 838 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 LISER+VSEDV+TSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA Sbjct: 839 LISERIVSEDVYTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAH 898 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V PGDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G GT+V+VR+FNR Sbjct: 899 VGPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGNYGTIVEVRVFNR 958 Query: 948 HGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV 1007 HG+DK+ER++ +ERE+IE L+RD+DDE ILDRNIY+RL ++L G+ AV GPKGFK +T Sbjct: 959 HGVDKDERALQIEREEIESLSRDRDDELAILDRNIYARLKQVLLGKMAVKGPKGFKANTQ 1018 Query: 1008 LSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMP 1067 ++ +++ E+ R QWWQ AV+DE + VE+L QYE K L+ RF++K+EK++ GDD+P Sbjct: 1019 VTEEVLGEFSRGQWWQLAVEDEDDAKIVEALNEQYENQKKQLDARFEDKVEKVRRGDDLP 1078 Query: 1068 PGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV 1127 PGV+++VKVFVA+KR +Q GDKMAGRHGNKG++SR++P EDMPFL DGTPVD LNPLGV Sbjct: 1079 PGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRVVPAEDMPFLADGTPVDFCLNPLGV 1138 Query: 1128 PSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISD 1187 PSRMNVGQI ETH+GWA LG +I + Y+ +GD++P++ L G + E Sbjct: 1139 PSRMNVGQILETHMGWASRALGLQIDEALKGYRRSGDLTPVKDALRFAYGDEVYAEGFET 1198 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 + L AE GVP++TPVFDGA E IN L A D SGQS+L+DG TGE F R Sbjct: 1199 ASEAVFLERAENATRGVPIATPVFDGAKEADINDALARAGFDTSGQSVLFDGRTGEQFAR 1258 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 VTVG YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1259 KVTVGVKYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1318 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 AY LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1319 AYTLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAE 1378 Query: 1368 TK 1369 Sbjct: 1379 DD 1380 >gi|332185540|ref|ZP_08387288.1| DNA-directed RNA polymerase, beta subunit [Sphingomonas sp. S17] gi|332014518|gb|EGI56575.1| DNA-directed RNA polymerase, beta subunit [Sphingomonas sp. S17] Length = 1392 Score = 1701 bits (4404), Expect = 0.0, Method: Composition-based stats. Identities = 831/1376 (60%), Positives = 1065/1376 (77%), Gaps = 12/1376 (0%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 R+RK FG E++ +P+LIEVQ+ SY+ FL + + GL+ +SVFPI Sbjct: 19 TAKRRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSDKSRGHVS--GLEKTLRSVFPIQD 76 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 F+G A L+F Y + PKFDV++C R +TYA P+++TLRL F+VD T AKS+ DIKE Sbjct: 77 FAGTAYLDFDDYVLEDPKFDVEECRQRGITYAAPMRVTLRLTAFEVDPDTEAKSVIDIKE 136 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT++GTF I G +R++VSQ+HRSPG+ FDHD+G+ SGK L+A R+IP Sbjct: 137 QDVYMGDMPLMTENGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLFAARVIPY 196 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+D EFD+KDI++VRIDR+RK+PVT+ L ALGM+SEEIL+ FY ++ + + W Sbjct: 197 RGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGMNSEEILNYFYNRLTFVRGDGGWKI 256 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P A + GAK +VD ++GE V +G+K++ + G+ L I ++ + G Y Sbjct: 257 PFQAEN-WRGAKPMFDIVDANSGEVVFPAGQKISPRAANKAAKDGLTQLLIPTEEIFGRY 315 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 A D++N +TGEIY+EAGD I ++LE + + + I +L +D V +IRNTL DK Sbjct: 316 SAYDLINEQTGEIYVEAGDEISAENLEALDKAGVDTIELLDIDHVATGPWIRNTLKADKA 375 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 ++R+ AL DIYRVMRPG+ T AE++F LFFD D+YDLS VGRVK+NMRL+LD PD Sbjct: 376 EEREQALSDIYRVMRPGEPPTLETAEALFAGLFFDPDRYDLSAVGRVKLNMRLDLDCPDT 435 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 V +R EDI+A++K LVDL++GKG IDDIDNLGNRRVRSVGE+L+NQYR+GLLRMER++K Sbjct: 436 VTTLRTEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVK 495 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH RR+SALG G Sbjct: 496 ERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPG 555 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL++FARVN YGFIETPYRKV D Sbjct: 556 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETPYRKVID 615 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 G+VT++VVYLSAMEE+ +AQA+++ D D FTE+LV R AGE ++ ++I +D S Sbjct: 616 GRVTDEVVYLSAMEEQKHTVAQASAATDADNRFTEDLVSARQAGEFLMALPDQITLMDVS 675 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPL+KAEAPFVGTGME VA+ SGAAI Sbjct: 676 PKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPFVGTGMEETVARDSGAAI 735 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 AKRAGIV+QVDA RIV+R+ G++D SGVDIY LMKFQRSNQ+TC+NQRPLVKVGD Sbjct: 736 AAKRAGIVDQVDAARIVVRAT-GEVDAGKSGVDIYTLMKFQRSNQSTCINQRPLVKVGDV 794 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V+ D+IADGPST+ G+LALGRN LVAFMPW+GYN+EDS+LISER+V +DVFTSIHI+EF Sbjct: 795 VKAGDVIADGPSTEFGELALGRNALVAFMPWNGYNYEDSILISERIVKDDVFTSIHIDEF 854 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EVMARDTKLGPE+ITRDIPNV EE L+N+DE GI+ VGAEV PGDILVGKITPKGESPMT Sbjct: 855 EVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYVGAEVEPGDILVGKITPKGESPMT 914 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTSLR+P GV+GT+VDVR+FNRHGIDK+ER++++ERE+IE L Sbjct: 915 PEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIDKDERAMAIEREEIERL 974 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 +D DDE+ IL+R +SRL E+L Q A + PKG KK V+ ++++ R +WW+FAV Sbjct: 975 KKDADDERTILNRATWSRLREMLLDQTATAAPKGVKKGIVIDAEVLESVDRHEWWKFAVA 1034 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D+ Q ++E++K QY+ + + D+F ++ +K++ GD++PPGVL++VKVFVA+KR +Q G Sbjct: 1035 DDARQSDLEAVKAQYDEAAKRITDKFHDRRDKLERGDELPPGVLKMVKVFVAVKRKLQPG 1094 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRILP EDMPFL DGTPVD+VLNPLGVPSRMNVGQIFETHLGWA Sbjct: 1095 DKMAGRHGNKGVISRILPQEDMPFLADGTPVDLVLNPLGVPSRMNVGQIFETHLGWAARN 1154 Query: 1148 LGKKIKSLINDYKANGDISP-------LRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LG ++ + + D++ + +++ L ++ G + E I DD+ V + + Sbjct: 1155 LGMQVAAQLEDWREANPDAKPGAVPEAVKARLVEIYGD-HYAEDIQARDDEEVAELVQNI 1213 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++GVP+ TPVFDGA E ++ ML +A L SGQS L+DG TG+ FDR VTVG IYMLKL+ Sbjct: 1214 RTGVPMGTPVFDGARESDVSEMLELAGLHTSGQSDLFDGRTGDQFDRKVTVGIIYMLKLH 1273 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEMLT+KSD Sbjct: 1274 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSD 1333 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DVVGRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL++DL++ + E Sbjct: 1334 DVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVDLKSMEEAQDDGLAE 1389 >gi|192360775|ref|YP_001981201.1| DNA-directed RNA polymerase subunit beta [Cellvibrio japonicus Ueda107] gi|226699384|sp|B3PK30|RPOB_CELJU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|190686940|gb|ACE84618.1| DNA-directed RNA polymerase, beta subunit [Cellvibrio japonicus Ueda107] Length = 1361 Score = 1700 bits (4403), Expect = 0.0, Method: Composition-based stats. Identities = 717/1365 (52%), Positives = 980/1365 (71%), Gaps = 4/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D+P L+ +Q SY F +++ ++R + GL AAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPHVMDVPYLLAIQLDSYRKFTQADLSANKREDVGLHAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+VSY FDV++C+ R +TYAVPL++ +RLI++D + K+I Sbjct: 61 FPIVSYSGNAALEYVSYSLGKAAFDVNECILRGVTYAVPLRVKVRLIIYDR--ESANKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++VRIDRRRK+P T L AL S+E+LS F+ ++ Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYVRIDRRRKLPATILLRALNYSSQEMLSMFFETSSFTLGK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + G + + D D G ++E G+++T+ ++ L++ GV + + S+ Sbjct: 239 DGQFSYEVVPSRLRGDVATFDIKD-DKGNIIVEEGRRITARHIRQLEKAGVDQMEVPSEY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+DIV+ TGE+ E I L +I + + + LY + ++ +I TL Sbjct: 298 LLGRSLAKDIVDTRTGELLFECNTEITSDVLSKIVAAGVEKVETLYTNELDCGPFISETL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + + +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL Sbjct: 358 RIDPTRTQLEALVEIYRMMRPGEPPTKESAEALFQNLFFSQERYDLSAVGRMKFNRRLGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 +T + +DI+ ++K L+ +RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 418 ETETGEGTLSNDDIVDVMKTLISIRNGKGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+ Sbjct: 478 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVF 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNNYGFLESPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +GKVT+ + YLSA+ E IAQA++SLD++G TEELV R E L + Sbjct: 598 RKVIEGKVTDQIEYLSAINESEYVIAQASASLDDNGRLTEELVSVRHQNEFTLKAPTDVQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+++ P VGTGME VA Sbjct: 658 YMDVSARQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSQKPLVGTGMERNVAAD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+++ VDA RIV++ + +++ +GVDIY L+K+ RSNQNTC+NQRP+V Sbjct: 718 SGVCVVAKRGGVIDSVDAGRIVVKVHDAEVEAGDAGVDIYNLIKYTRSNQNTCINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +GD V R DI+ADGPS D+G+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 778 SMGDIVSRGDILADGPSVDMGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 838 HIQELTCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVGGGDILVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG GTV+DV++F R G++K++RS+ +E+ Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGTKGTVIDVQVFTRDGLEKDQRSLEIEKA 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L GQ SG KG KK L+ D++ + QW+ Sbjct: 958 QLDEVRKDLNEEFRIVETATFERLRAALVGQIVASG-KGVKKGEALTHDILDGLEKDQWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + ++ + Q + IL++RF++K K+ GDD+ PGVL++VKV++A+KR Sbjct: 1017 KLRMNEDALNEQIDRAEEQLAERRKILDERFEDKKRKLSTGDDLAPGVLKIVKVYLAIKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ ++G VDIVLNPLGVPSRMNVGQ+ E HLG Sbjct: 1077 RIQPGDKMAGRHGNKGVISVIMPVEDMPYDENGETVDIVLNPLGVPSRMNVGQVLEMHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG KI LI + KA DI + G + E + + D V+ +A+ Sbjct: 1137 MAAKGLGVKINKLIQEQKAVADIRSFLEEIYNSTGDVAAKEDLVSFSDREVIDLAKNLVD 1196 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E I ++LR+A L ++GQ+ L+DG TG+ F R VTVGY+YMLKLNH+ Sbjct: 1197 GVPMATPVFDGAKEHEIKALLRLASLSDTGQTTLFDGRTGDQFSRSVTVGYMYMLKLNHL 1256 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1257 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1316 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 GRT++Y++IV G+ E G PESFNVLVKE+++LG++I+LE Sbjct: 1317 AGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGINIELEQED 1361 >gi|198282630|ref|YP_002218951.1| DNA-directed RNA polymerase subunit beta [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666714|ref|YP_002424823.1| DNA-directed RNA polymerase, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|226699362|sp|B7J460|RPOB_ACIF2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699363|sp|B5ELX2|RPOB_ACIF5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|198247151|gb|ACH82744.1| DNA-directed RNA polymerase, beta subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518927|gb|ACK79513.1| DNA-directed RNA polymerase, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 1362 Score = 1700 bits (4403), Expect = 0.0, Method: Composition-based stats. Identities = 725/1366 (53%), Positives = 991/1366 (72%), Gaps = 5/1366 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK+ I+ +P L+ Q SY FL ++ P R GL+A F+SV Sbjct: 1 MAYSFTEKKRIRKDFGKSQSILAVPYLLATQMDSYREFLQESVPPAARKETGLEAVFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ ++SG AML++VSY + P FDV +C R LTY L++ LRL V + D+ TGAK + Sbjct: 61 FPMESYSGNAMLDYVSYRLEKPVFDVVECRQRGLTYCAGLRVRLRLAVMEKDDTTGAKRV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD+KEQ +YMG+LPLMT+ G+FVI G +R++VSQLHRSPG+ FDHD+G+ SGKLL+ Sbjct: 121 KDVKEQDVYMGELPLMTEHGSFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFNA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T+ L ALG +++IL F+ + Sbjct: 181 RIIPYRGSWLDFEFDPKDHVYARIDRRRKLPATTLLRALGYSTQDILEMFFDMETFRLID 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKE-KGVKFLGITSD 301 + L L G + +V +TG+ ++++GK++T K+L E +G+ + + Sbjct: 241 GDLRYVLIPQRL-QGEVAAFDIVSPETGDVLVQAGKRITVRQTKALSEVQGLHEIPVPDS 299 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G VA DIV+ ETGE+ ++A + + + L+ + + LY++ ++ YI T Sbjct: 300 FLLGKVVARDIVHPETGEVVVQANEPVSGELLDALRKMPSLTLHTLYLNELDRGPYISET 359 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D ++D DA ++IYR+MRPG+ T A+++F LFF D+YDLS VGR+K N R+ Sbjct: 360 LRIDTSRDAHDAQMEIYRLMRPGEPPTKDAAQNLFQGLFFSPDRYDLSAVGRMKFNRRVG 419 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + DIIA++K+LV LRNG G IDDID+LGNRRVRSVGE+++NQ+RLGL+R Sbjct: 420 RDEITGPGVLNDADIIAVLKVLVALRNGVGEIDDIDHLGNRRVRSVGELMENQFRLGLVR 479 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++K+R++ + + + PQDLINAKP+ + V EFF SSQLSQ + N LS +TH RR+ Sbjct: 480 VERAVKDRLALAESEGLTPQDLINAKPIAAVVNEFFGSSQLSQFMDQTNPLSEVTHKRRV 539 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL+ +AR N+YGF+ETP Sbjct: 540 SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSCYARTNSYGFLETP 599 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V D + T++V YLSA+EE N IAQANS++DE G T+ELV CR E L +++ Sbjct: 600 YRRVVDRRTTDEVEYLSAIEEGNYMIAQANSTVDEHGVLTDELVSCRFKNEFTLANPDQV 659 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 F+D SP+Q+VS+AAS+IPFLE+DD+NR LMG NMQRQAVP ++++AP VGTGME VVA Sbjct: 660 QFMDISPRQIVSVAASMIPFLEHDDANRALMGSNMQRQAVPTVRSDAPMVGTGMERVVAI 719 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGAA+VA+R G+V+ VD RIVIR + + P GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 720 DSGAAVVARRGGVVDIVDGARIVIRVSDEETLPEEPGVDIYNLVKYARSNQNTTLNQRPV 779 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VKVGD V R D++ADGPST++G+LALG+N+LVAFMPW+GYNFEDS+LISER+V+ED +T+ Sbjct: 780 VKVGDVVSRGDVLADGPSTEMGELALGQNILVAFMPWNGYNFEDSILISERVVAEDRYTT 839 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF V ARDTKLGPEEITRDIPNV+E L+++DE GI+ +GAE+ PGDILVGK+TPK Sbjct: 840 IHIEEFSVFARDTKLGPEEITRDIPNVAEGALRHLDESGIVVIGAELAPGDILVGKVTPK 899 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D S+R+P+G+ GTV+DV++F R GI+K+ R+ S+E Sbjct: 900 GETQLTPEEKLLRAIFGEKASDVKDNSMRMPAGMYGTVIDVQVFTRDGIEKDARAKSIEE 959 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++ + +D +D+ I++ + Y R+ L G+ A GP G ++ + + PR++W Sbjct: 960 HELARIRKDLNDQYRIVEEDSYQRIERQLIGKVAEGGPNGLAAGNKVTKAYLKDLPRAKW 1019 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 ++ ++ E+ ++E ++ Q E + L+ + K K+ GDD+ PGVL++VKV VA+K Sbjct: 1020 FEIRLRTEESNESLEQIRAQLEEQRQRLDAVLEEKRRKLTQGDDLSPGVLKMVKVHVAIK 1079 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I+P EDMP+L DGT VDIVLNPLGVPSRMNVGQI ETHL Sbjct: 1080 RHLQPGDKMAGRHGNKGVVSKIVPVEDMPYLADGTAVDIVLNPLGVPSRMNVGQILETHL 1139 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA GLGKKI ++++ + ++ +R+FL ++ E + D + ++ + Sbjct: 1140 GWAAKGLGKKIGAMLD---SEVAMAEMRAFLAEIYNRSGKKEDLDSLTDQEIRELSANLR 1196 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA EE I ML +A L SGQ LYDG +G+ FDRPVTVGY+YMLKL+H Sbjct: 1197 GGVPMATPVFDGASEEEIGDMLELAGLPRSGQVTLYDGRSGDAFDRPVTVGYLYMLKLHH 1256 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1257 LVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1316 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 V GR+++YESIV G+ + G PESFNVL+KE+++LG+ I+LE S+ Sbjct: 1317 VSGRSKMYESIVKGDFRMDAGMPESFNVLLKELRSLGIDIELEQSK 1362 >gi|149913534|ref|ZP_01902067.1| DNA-directed RNA polymerase subunit beta [Roseobacter sp. AzwK-3b] gi|149812654|gb|EDM72483.1| DNA-directed RNA polymerase subunit beta [Roseobacter sp. AzwK-3b] Length = 1379 Score = 1700 bits (4403), Expect = 0.0, Method: Composition-based stats. Identities = 840/1370 (61%), Positives = 1069/1370 (78%), Gaps = 12/1370 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK+FGK E++D+P+LIEVQK+SYD FL P EG++ F+SV Sbjct: 1 MAQTFLGQKRLRKYFGKIREVLDMPNLIEVQKSSYDLFLKSGDQPKPLDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV Y+ + PK+DV++C+ RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETSVLEFVGYDLERPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD ++ RIDRRRK+PVT+ L ALGMD E I+ +Y + Y + Sbjct: 181 RIIPYRGSWLDFEFDAKDHVYARIDRRRKLPVTTLLYALGMDQEGIMDAYYDTVDYKLKK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + + G + + LVD TGE + E+ KK+T +K L + G V L + + Sbjct: 241 NKGWVSKFFPERVRGTRPTFDLVDAKTGEVIAEASKKITPRAVKKLIDDGNVSELLMPFE 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA DI+N ETG IY+EAGD + + S++E+ + I DIP+L +D+ Sbjct: 301 QIAGKFVARDIINEETGAIYVEAGDELTIERDKDGDIIGGSVKELLDAGITDIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 +N AYIRNT+ DKN +R+ AL+DIYRVMRPG+ T A ++F+ LFFD+++YDLS V Sbjct: 361 INVGAYIRNTVAMDKNMNRETALMDIYRVMRPGEPPTEEAASALFDTLFFDAERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD PD R + +EDI+A IK LV+LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALDKPDTQRTLDREDIVACIKALVELRDGKGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYRKV G+VT+DVVY+SA EE +AQAN+ LD+ G F +LV R +G Sbjct: 601 VNKYGFIETPYRKVNSGQVTDDVVYMSATEEMRHTVAQANAKLDDAGRFVNDLVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E +L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVP L++EAP + Sbjct: 661 EYMLAPNESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPTLRSEAPLI 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGA+I+AKRAGI++QVDA RIV+R+ E L+ GVDIYR+ KFQRSN Sbjct: 721 GTGIEGVVARDSGASIMAKRAGIIDQVDAARIVVRATED-LEIGDPGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVGD V++ ++IADGPSTD+G+LALG+N++ AFMPW+GYNFEDS+LISE Sbjct: 780 QNTCINQRPLVKVGDLVQKGEVIADGPSTDMGELALGKNVVTAFMPWNGYNFEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ AV GPKG K ++ ++ + Sbjct: 960 KDERALQIEREEVERLARDRDDELGILDRNIYARLKSLILGKVAVKGPKGVKSNSEITEE 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ + QWWQ A++DEK + VE+L QYE K LE RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLETLTKGQWWQLALKDEKDAQIVEALNEQYEAQKRTLEARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPIEDMPFLADGTPVDFCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG KI + +Y+ +GD++P+R ++ G + E I D D+ Sbjct: 1140 NVGQILETHMGWAARGLGIKIDEALQEYRRSGDLTPVREAMKIAYGDDVYDEGIVDMDET 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 ++ A GVP++TPVFDGA E +N LR A DESGQS+L+DG TGE F RPVTV Sbjct: 1200 HLVEAAGNVTKGVPIATPVFDGAKEADVNDALRRAGFDESGQSVLFDGRTGEQFSRPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y++KL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GVKYLMKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361 QEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL++ Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNM 1369 >gi|311693264|gb|ADP96137.1| DNA-directed RNA polymerase subunit beta [marine bacterium HP15] Length = 1361 Score = 1700 bits (4402), Expect = 0.0, Method: Composition-based stats. Identities = 717/1367 (52%), Positives = 981/1367 (71%), Gaps = 7/1367 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M + R+RK F K P ++D+P L+ +Q S+ FL M AP++R GL AAFK Sbjct: 1 MQMTYSYTEKKRIRKDFSKLPSVMDVPYLLSIQLDSFRDFLQMEAAPEDRRETGLHAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI ++SG A LE+VSY P FDV +C R +TYA PL++ +RLI++D + K Sbjct: 61 SVFPIVSYSGNAALEYVSYRIGEPVFDVKECQLRGVTYAAPLRVKVRLIIYDK--ESSNK 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IKDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY Sbjct: 119 AIKDIKEQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLY 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + R+IP +G W+D EFD KD + VRIDRRRK+P + L ALG SE++L F+ +S Sbjct: 179 SARVIPYRGSWLDFEFDPKDSVFVRIDRRRKLPASILLRALGYTSEQMLEMFFETSKFSL 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + L + L G + + D D G ++E G+++T+ +K L++ G+ L + + Sbjct: 239 GAEVCKLELVPSRL-RGDIATFDIKDND-GNVIVEEGRRITARHIKQLEKAGINELEVPT 296 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G +A+D+++ +GE+ +E + E+ + +I + ++DI LY + ++ ++ + Sbjct: 297 EYLYGRVLAKDMIDQASGEVLVECNSELTEELVTKILDAGVKDIETLYTNDLDCGPFMSD 356 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D + +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K+N RL Sbjct: 357 TLRIDPTRTPLEALVEIYRMMRPGEPPTKESAENLFNNLFFSEERYDLSAVGRMKLNRRL 416 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 + + EDII ++K L+D+RNG+G +DDIDNLGNRRVR VGEM +NQ+R+GL+ Sbjct: 417 RREESTGEGTLTHEDIIDVLKTLIDIRNGQGNVDDIDNLGNRRVRCVGEMAENQFRVGLV 476 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER+++ER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR Sbjct: 477 RVERAVRERLSLAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRR 536 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N+YGF+E+ Sbjct: 537 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARSNSYGFLES 596 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT-EELVFCRCAGEEILVPRE 659 PYRKV +G VT++VVYLSA+EE N IAQA++++DE +ELV R E + P E Sbjct: 597 PYRKVENGVVTDEVVYLSAIEESNYVIAQASAAMDEKTKRLTDELVTVRHQNEFTVTPPE 656 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 ++F+D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E V Sbjct: 657 SVNFMDVSPRQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLKAQVPLVGTGVERTV 716 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A+ SG + A+R G++E VDA RIV+R + + +GVDIY L K+ RSNQNTC+NQR Sbjct: 717 AQDSGVCVSARRGGVIESVDASRIVVRVNNEETEAGDAGVDIYNLTKYTRSNQNTCINQR 776 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 +V+ GD + R D++ADGPS DLG+LALG+NM +AFMPW+GYNFEDS+LISE++V ED Sbjct: 777 SIVRQGDIIARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISEKVVQEDRL 836 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 T+IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV PGDILVGK+T Sbjct: 837 TTIHIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVGPGDILVGKVT 896 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGE+ +TPEEKLLRAIFGEKA DV+DTS RVP+G GTV+DV++F R GI+K++R+ S+ Sbjct: 897 PKGETQLTPEEKLLRAIFGEKASDVKDTSSRVPTGTRGTVIDVQVFTRDGIEKDQRAQSI 956 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 E+EQ++ +D DE I++ + RL L GQ +SGP G KK L ++E PRS Sbjct: 957 EKEQLDQYRKDLKDEYRIVEGATFERLNSALKGQEVISGP-GLKKGATLEESYLAELPRS 1015 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 W++ ++DE + +E + E K E RF +K K+Q GDD+ PGVL++VKV++A Sbjct: 1016 DWFKLRMKDESLNELLEKSEQGLEDRKKEHEARFDDKKGKLQQGDDLAPGVLKIVKVYLA 1075 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR IQ GDKMAGRHGNKG++S ++P EDMP+ + G VD+VLNPLGVPSRMNVGQ+ ET Sbjct: 1076 IKRRIQPGDKMAGRHGNKGVISSVMPIEDMPYDEHGNTVDVVLNPLGVPSRMNVGQVLET 1135 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 HLG A GLG++I ++++ + ++ L + + D +L + Sbjct: 1136 HLGAAAKGLGERISQMLDEQRKVAELRKLLDEIYN-HSDEVFKVDLDSLSDKEILEMCHN 1194 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + GVP++TPVFDGA E + ML +A L +GQ++LYDG TG+ FDRPVTVGY+Y+LKL Sbjct: 1195 LRGGVPMATPVFDGAKEAEVKRMLELAGLSTTGQTMLYDGRTGDMFDRPVTVGYMYILKL 1254 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH++ DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1255 NHLIDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1314 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LE+ Sbjct: 1315 DDVNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESE 1361 >gi|70732889|ref|YP_262657.1| DNA-directed RNA polymerase subunit beta [Pseudomonas fluorescens Pf-5] gi|88909630|sp|Q4K526|RPOB_PSEF5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|68347188|gb|AAY94794.1| DNA-directed RNA polymerase, beta subunit [Pseudomonas fluorescens Pf-5] Length = 1357 Score = 1700 bits (4402), Expect = 0.0, Method: Composition-based stats. Identities = 721/1365 (52%), Positives = 986/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L FY V+ +G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVKG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ESLSLELVPQRL-RGEIAVLDIQD-DKGKVIVEQGRRITARHINQLEKAGIKELDVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKAIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V D VT+++V+LSA+EE + IAQA++++++ G +ELV R E + E + Sbjct: 597 RVVKDALVTDEIVFLSAIEEADHVIAQASATMNDKGQLVDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G A G G KK ++ +++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGHKAEGG-AGLKKGQEITDEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR+FL+++ G E + + D +L +A + Sbjct: 1136 LAAKGLGEKINRMVEEQR---KVAELRTFLDEIYNQIGGRNEDLDSFSDQEILDLANNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ L DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 GGVPMATPVFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|260577192|ref|ZP_05845168.1| DNA-directed RNA polymerase, beta subunit [Rhodobacter sp. SW2] gi|259020572|gb|EEW23892.1| DNA-directed RNA polymerase, beta subunit [Rhodobacter sp. SW2] Length = 1377 Score = 1699 bits (4400), Expect = 0.0, Method: Composition-based stats. Identities = 834/1380 (60%), Positives = 1075/1380 (77%), Gaps = 14/1380 (1%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ V G R+R++FGK E++++P+LIEVQK+SYD FL P +G+Q F+ Sbjct: 1 MAQSYV--GQKRIRRYFGKIREVLEMPNLIEVQKSSYDLFLKSGDGPKPTDGDGIQGVFQ 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI F+ ++LEFV YE + PK+DVD+C RD+TYA PLK+TLRLIVFD+DE TGA+ Sbjct: 59 SVFPIKDFNETSVLEFVKYELEKPKYDVDECQSRDMTYAAPLKVTLRLIVFDIDEDTGAR 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT++GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ Sbjct: 119 SVKDIKEQDVYMGDMPLMTQNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L A+GMD E I+ +Y + + Sbjct: 179 ACRIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLFAMGMDQEGIMDAYYETVAFKH 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGIT 299 + M G + + LVD TGE ++++G+K+T + S + G + L + Sbjct: 239 EKNKGWVSRFFPKRMSGTRPAFDLVDAATGEVILKAGEKVTPKMANSWMKDGKITDLLLP 298 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYV 349 D + G YVA+DI+N TGEI++EAGD + + SL+ + + I DIP+L + Sbjct: 299 FDQILGRYVAKDIINETTGEIWVEAGDELTMEYDRDGAVKGGSLKVLLDNGITDIPVLDI 358 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D+V Y+RNT+ DKN R AL+DIYRVMRPG+ T A +F+ LFFDS++YDLS Sbjct: 359 DNVTVGPYLRNTMHADKNLGRDTALMDIYRVMRPGEPPTVEAASQLFDTLFFDSERYDLS 418 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 VGRVKMNMRL+L PD R + + DIIA IK L +LR+GKG IDDID+LGNRRVRSVGE Sbjct: 419 AVGRVKMNMRLDLKAPDTQRTLDRADIIACIKALTELRDGKGEIDDIDHLGNRRVRSVGE 478 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +++NQYR+GLLRMER+IKER+SSV+ID++MPQDLINAKP +AV EFF SSQLSQ + Sbjct: 479 LMENQYRVGLLRMERAIKERMSSVEIDTIMPQDLINAKPAAAAVREFFGSSQLSQFMDQT 538 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +F Sbjct: 539 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGQNIGLINSLATF 598 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 ARVN YGFIETPYRKV DGKVT++VVY+SA EE +AQAN++ D +G FT++L+ R Sbjct: 599 ARVNKYGFIETPYRKVIDGKVTDEVVYMSATEEMRHTVAQANAAQDAEGRFTDDLISSRK 658 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 +GE +L P + ID ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+++AP Sbjct: 659 SGEFMLNPPDAIDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQSDAP 718 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 FVGTG+E+VVA+ SGAAI+A+RAG+++QVDA RIV+R+ E LDP+ GVDIYRL KF+R Sbjct: 719 FVGTGIEAVVARDSGAAIMARRAGVIDQVDATRIVVRATE-MLDPAEPGVDIYRLRKFKR 777 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 SNQ++C+NQRPLVKVGD V R +++ADGP TD+G+LALGRN++VAFMPW+GYN+EDS+LI Sbjct: 778 SNQSSCINQRPLVKVGDVVTRGEVVADGPCTDMGELALGRNIVVAFMPWNGYNYEDSILI 837 Query: 830 SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 SER++ +DVFTSIHIEE+EV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV Sbjct: 838 SERILRDDVFTSIHIEEYEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVQ 897 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 PGDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G GT+V+VR+FNRHG Sbjct: 898 PGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGAFGTIVEVRVFNRHG 957 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 +DK+ER++ +ERE++E L+RD+DDE IL+RNIYSRL ++ G+ AV GPKG K + ++ Sbjct: 958 VDKDERALQIEREEVERLSRDRDDELAILERNIYSRLKTLIMGKVAVKGPKGVKAGSEIN 1017 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 +L+S R Q+WQ A+ +E + VE+L Q+E K L++RF +K+EK++ GDD+PPG Sbjct: 1018 DELLSTLSRGQYWQLALGEEADAKEVEALHDQFEAQKRALDNRFDDKVEKVRRGDDLPPG 1077 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V+++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPS Sbjct: 1078 VMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPS 1137 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYD 1189 RMNVGQI ETH+GWA GLG KI + +Y+ +GD++P+R + G ++ +D + Sbjct: 1138 RMNVGQILETHMGWAARGLGIKIDDALKEYRRSGDLTPVREAVRHAYGDETYEAAFADRN 1197 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 + ++ +A GVP+S+PVFDGA E +N LR A D SGQS ++DG TGE F RPV Sbjct: 1198 EADLVELAGNVTRGVPISSPVFDGAKEADVNDALRRAGFDTSGQSEVFDGRTGEKFARPV 1257 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TVG YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY Sbjct: 1258 TVGVKYMLKLHHLVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAY 1317 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1318 TLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEE 1377 >gi|84515197|ref|ZP_01002560.1| DNA-directed RNA polymerase beta subunit [Loktanella vestfoldensis SKA53] gi|84511356|gb|EAQ07810.1| DNA-directed RNA polymerase beta subunit [Loktanella vestfoldensis SKA53] Length = 1379 Score = 1699 bits (4399), Expect = 0.0, Method: Composition-based stats. Identities = 837/1381 (60%), Positives = 1077/1381 (77%), Gaps = 15/1381 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL + EG++ F+SV Sbjct: 1 MASSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDSATPLDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LEFV YE + PK+DV++C+ RD+TYA PLK+TLRLIVF+VDE TG+KS+ Sbjct: 61 FPIKDFNETAVLEFVKYELEKPKYDVEECMQRDMTYAAPLKVTLRLIVFEVDEDTGSKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-- 240 RIIP +G W+D EFD+KD++ RIDRRRK+PVT+ L ALG+D E I++ +Y + Y+ Sbjct: 181 RIIPYRGSWLDFEFDAKDLVFCRIDRRRKLPVTTLLYALGLDQEGIMNAYYNTVDYTLDP 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGIT 299 + + W + G + + LVD DTGE + ++G+K+T +K + ++G VK L + Sbjct: 241 KTNAWTTKFFPE-RVRGTRPTYDLVDADTGEIIAKAGEKVTPRSVKKMIDEGKVKNLLVP 299 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKS----------LEEIFHSEIRDIPILYV 349 + + G YVA DI+N +TG I++EAGD + + L ++ + I IP+L + Sbjct: 300 YEHIVGKYVARDIINEQTGAIHVEAGDELTLEIDKTGAVTGGTLRDLIDAGITSIPVLDI 359 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D+++ YIR+T+ DKN +R+ AL+DIYRVMRPG+ T A ++F+ LFFD ++YDLS Sbjct: 360 DNISVGGYIRSTMAADKNMNRETALMDIYRVMRPGEPPTVDSASALFDTLFFDGERYDLS 419 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 VGRVKMNMRL+LD D +R +R+EDI++ IK L +LR+GKG IDDID+LGNRRVRSVGE Sbjct: 420 AVGRVKMNMRLDLDADDTIRTLRREDIVSCIKALTELRDGKGDIDDIDHLGNRRVRSVGE 479 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +++NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + Sbjct: 480 LMENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQT 539 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +F Sbjct: 540 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATF 599 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 ARVN YGFIETPYRKV DGKVT+DV Y+SA EE +AQAN+S++ DGSF +LV R Sbjct: 600 ARVNKYGFIETPYRKVVDGKVTDDVQYMSATEEMRHTVAQANASMNPDGSFKNDLVSTRV 659 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 G+ L PRE +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP Sbjct: 660 NGDYTLAPRENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAP 719 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 VGTG+E VVA+ SGAAI+AKRAG+++QVDA RIVIR+ L+ +GVDIYR+ KFQR Sbjct: 720 LVGTGIEEVVARDSGAAIMAKRAGVIDQVDAQRIVIRATSD-LELGDAGVDIYRMRKFQR 778 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 SNQNTC+NQRPLVKVGD V++ +IADGPSTDLG+LALG+N++VAFMPW+GYN+EDS+LI Sbjct: 779 SNQNTCINQRPLVKVGDLVQKGQVIADGPSTDLGELALGKNVVVAFMPWNGYNYEDSILI 838 Query: 830 SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 SER+V +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV Sbjct: 839 SERIVRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVG 898 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 P DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G GTVV+VR+FNRHG Sbjct: 899 PADILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDFGTVVEVRVFNRHG 958 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 ++K+ER++ +ERE++E L+RD+DDE+ ILDRNIY+RL +I+ G+ A GPKGFK V++ Sbjct: 959 VEKDERALQIEREEVERLSRDRDDERAILDRNIYARLWDIIGGKTAAKGPKGFKAGAVVT 1018 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + +S+ R QWWQ A++DE + VE+L QYE K ++ RF++K+EK++ GDD+PPG Sbjct: 1019 EESVSDLSRGQWWQLAMEDEDDAKIVEALNQQYEIQKRAMDARFEDKVEKVRRGDDLPPG 1078 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V+++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPS Sbjct: 1079 VMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPS 1138 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYD 1189 RMNVGQI ETH+GWA GLG +I + +Y+ +GD++P+R ++ G + E I D Sbjct: 1139 RMNVGQILETHMGWAARGLGIQIDEALGEYRRSGDLTPVREAMKIAYGDDVYEEGIVGMD 1198 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 + ++ A GVP++TPVFDGA E +N LR A D SGQSIL+DG TGE F R V Sbjct: 1199 EADLVEAAGHVTRGVPIATPVFDGAKEADVNDALRRAGFDTSGQSILFDGRTGEQFSRKV 1258 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TVG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1259 TVGVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1318 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1319 TLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEDE 1378 Query: 1370 N 1370 Sbjct: 1379 E 1379 >gi|114327212|ref|YP_744369.1| DNA-directed RNA polymerase subunit beta [Granulibacter bethesdensis CGDNIH1] gi|122327807|sp|Q0BUQ6|RPOB_GRABC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|114315386|gb|ABI61446.1| DNA-directed RNA polymerase beta chain [Granulibacter bethesdensis CGDNIH1] Length = 1391 Score = 1699 bits (4399), Expect = 0.0, Method: Composition-based stats. Identities = 828/1383 (59%), Positives = 1057/1383 (76%), Gaps = 28/1383 (2%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 F G R+RK F + +++ +P+LI+VQ+ASY+ FL MN+ PD R GLQ F+SVFPI Sbjct: 11 SFTGRKRIRKSFARIGDVVPMPNLIDVQRASYEAFLQMNVHPDNRTPTGLQEVFRSVFPI 70 Query: 66 TAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDI 125 F+G LEFV+YE + PK+DV++C+ R +T+A PLK+ LRLIV+DVDE TG++SI+DI Sbjct: 71 DDFAGRGRLEFVNYELEEPKYDVEECIQRGMTFAAPLKVILRLIVWDVDEDTGSRSIRDI 130 Query: 126 KEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRII 185 KEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A R+I Sbjct: 131 KEQPVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAARVI 190 Query: 186 PDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL----------------------GM 223 P +G W+D EFDSKD+++VRIDRRRK+PVT+ L AL GM Sbjct: 191 PYRGSWLDFEFDSKDLVYVRIDRRRKLPVTTLLYALEGQRTEAAIASGTDPQDLPEIHGM 250 Query: 224 DSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG 283 +EEILS FY ++V++ W P G ++ +L+D DTG V E+G KLT+ Sbjct: 251 TAEEILSYFYTQVVFTSTPKGWARPFDPE-AFRGITLAEALIDADTGTVVAEAGTKLTAR 309 Query: 284 LLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRD 343 + + E+ K + + L G Y+AED+VN +TGEIY EAG+ + E L + + Sbjct: 310 SARKIAEQA-KTVLVGRADLLGRYMAEDLVNDQTGEIYAEAGEELTEARLAALETLGVTS 368 Query: 344 IPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDS 403 +P L VD +IRNTL DKN R DAL+DIYRVMRPG+ T AE++F LFFD Sbjct: 369 LPTLAVDQ-TTGPWIRNTLAIDKNSTRDDALIDIYRVMRPGEPPTPETAEALFRGLFFDM 427 Query: 404 DKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRR 463 D+YDLS+VGRVKMNMRL +D PD VR +RKEDI+ +KIL DL++G+G IDDIDNLGNRR Sbjct: 428 DRYDLSSVGRVKMNMRLGVDAPDTVRTLRKEDILRTVKILCDLKDGRGAIDDIDNLGNRR 487 Query: 464 VRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLS 523 VRSVGE+++NQYRLGLLRMER+I+ER+ SVDID+VMP DLINAKP +AV EFF SSQLS Sbjct: 488 VRSVGELMENQYRLGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREFFGSSQLS 547 Query: 524 QLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLV 583 Q + N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+ Sbjct: 548 QFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLI 607 Query: 584 SSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEE 643 +SL ++A+VN YGFIETPYR V DGKV++ YLSAMEE+ +AQA++ D G TEE Sbjct: 608 NSLATYAKVNKYGFIETPYRMVEDGKVSDQWRYLSAMEEDRLVVAQADAPRDSTGKLTEE 667 Query: 644 LVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPL 703 L+ R G+ LV E + +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL Sbjct: 668 LISVRRQGDFRLVKPEDVTSMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPL 727 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 ++A+AP VGTGME+ VA+ SGA IVA+RAG+V+Q+D RIV+R+ D +T GVDIYR Sbjct: 728 IRADAPLVGTGMEAAVARDSGATIVARRAGVVDQIDGARIVVRASGE--DGATQGVDIYR 785 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 L KF RSNQ+TC+NQRPLVKVGD V DIIADGPST+LG+LALGRN+L AFMPW+GYNF Sbjct: 786 LRKFMRSNQSTCINQRPLVKVGDHVISGDIIADGPSTELGELALGRNVLCAFMPWNGYNF 845 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIIC 883 EDS+LISER+ +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE L+N+DE GI+ Sbjct: 846 EDSILISERIARDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNLDEAGIVY 905 Query: 884 VGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVR 943 +GAEVNPGDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSL++P G +GT+VDVR Sbjct: 906 IGAEVNPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGTTGTIVDVR 965 Query: 944 IFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK 1003 +F+R G+DK+ER++++ER +IE LA+D+DDE+ I +R +RL E L G A G KG K Sbjct: 966 VFSRRGVDKDERAMAIERAEIERLAKDRDDERGIQERAFLNRLREKLMGHPASGGFKGIK 1025 Query: 1004 KSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWG 1063 T+++ ++++E+PR W +VQD+ V ++E LK +++ + + ++ RF+ K+EK+Q G Sbjct: 1026 AGTIITDEVLAEHPRGAWRNISVQDDAVVADIELLKREFDAAVAKIQARFEGKVEKLQRG 1085 Query: 1064 DDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLN 1123 D++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG+VSR++P EDMPFL+DGTPVD+VLN Sbjct: 1086 DELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDGTPVDLVLN 1145 Query: 1124 PLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY-KANGDISPLRSFLEKVIGTGSHT 1182 PLGVPSRMNVGQI ETHLGWAC LG++I L+ DY + L S L ++ G + Sbjct: 1146 PLGVPSRMNVGQILETHLGWACANLGRQIGELVEDYRRNGQQRDELLSRLREIYGENVYN 1205 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242 + I+D ++D ++ +AE + GVP++TPVFDGA I +ML A LD SGQ +L DG TG Sbjct: 1206 DVIADMNNDQLIELAENLRKGVPIATPVFDGARPSDIENMLSRAGLDTSGQVVLTDGRTG 1265 Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302 EPF+R VTVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW + Sbjct: 1266 EPFERKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1325 Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +AYGAAY LQEMLT+KSDDV GRT+VYE+IV D+FE G PESFNVL+KE+++LGL++D Sbjct: 1326 EAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRDQDSFEAGIPESFNVLMKELKSLGLNVD 1385 Query: 1363 LEN 1365 LEN Sbjct: 1386 LEN 1388 >gi|149376693|ref|ZP_01894452.1| DNA-directed RNA polymerase subunit beta [Marinobacter algicola DG893] gi|149359066|gb|EDM47531.1| DNA-directed RNA polymerase subunit beta [Marinobacter algicola DG893] Length = 1358 Score = 1699 bits (4399), Expect = 0.0, Method: Composition-based stats. Identities = 715/1366 (52%), Positives = 989/1366 (72%), Gaps = 10/1366 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P ++D+P L+ +Q S+ FL AP+ R GL AAFKSV Sbjct: 1 MTYSYTEKKRIRKDFSKLPSVMDVPYLLSIQLDSFRDFLQSEAAPENRRETGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+VSY P FDV +C R +TYA PL++ +RLI++D + K+I Sbjct: 61 FPIVSYSGNAALEYVSYRIGEPVFDVKECQLRGVTYAAPLRVKVRLIIYDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD + VRIDRRRK+P + L ALG +SE++L F+ +S Sbjct: 179 RVIPYRGSWLDFEFDAKDSVFVRIDRRRKLPASILLRALGYNSEQMLEMFFDTSKFSIGP 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L + L G + + D G ++E G+++T+ +K L++ G+ L + ++ Sbjct: 239 EVCKLELVPSRL-RGDIATFDIKDKK-GSVIVEEGRRITARHIKQLEKAGLTELEVPTEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +++D+V+ ++GE+ +E + E+ + +I + + +I LY + ++ ++ +TL Sbjct: 297 LHGRVLSKDMVDTKSGEVLVECNTELTEEVVTKILDAGVTEIETLYTNDLDCGPFMSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +AL++IYR+MRPG+ T AE++FN LFF ++YDLS+VGR+K+N RL Sbjct: 357 RIDPTRTPLEALVEIYRMMRPGEPPTKESAENLFNNLFFSEERYDLSSVGRMKLNRRLRR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DII ++K L+D+RNG+G +DDIDNLGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 EESTGEGTLTHDDIIDVLKTLIDIRNGQGNVDDIDNLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVRERLSLAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N+YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARSNSYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +G+VT++VVYLSA+EE N IAQA++++DE+ ++ELV R E + P E ++ Sbjct: 597 RKVVEGEVTDEVVYLSAIEESNYIIAQASAAMDENKRLSDELVTVRHQNEFTVTPPENVN 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+++ P VGTG+E VA+ Sbjct: 657 FMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSQVPLVGTGVERTVAQD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A+R G++E VDA RIV+R + + + +GVDIY L K+ RSNQNTC+NQR +V Sbjct: 717 SGVCVTARRGGVIESVDAARIVVRVNDDETEAGDAGVDIYNLTKYTRSNQNTCINQRSIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GDE+ R D++ADGPS DLG+LALG+NM +AFMPW+GYNFEDS+LISE++V ED T+I Sbjct: 777 NQGDEIARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISEKVVQEDRLTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVGPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTS RVP+G GTV+DV++F R GI+K+ R+ S+E+E Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSSRVPTGTRGTVIDVQVFTRDGIEKDTRAQSIEKE 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D DE I++ + RL L GQ +SGP G KK L ++E PR W+ Sbjct: 957 QLDEYRKDLKDEYRIVEGATFERLTNALKGQEVISGP-GLKKGAKLDESYLAELPRDDWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++DE + +E + E K E RF +K K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLRMKDEALNELLEKSEQGLEDRKKEHEARFDDKKGKLQQGDDLAPGVLKIVKVYLAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S ++P EDMP+ + G VDIVLNPLGVPSRMNVGQ+ ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISAVMPIEDMPYDEYGNTVDIVLNPLGVPSRMNVGQVLETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSH--TEKISDYDDDSVLRVAEQW 1200 A GLG++I ++++ + I+ LR+ L+++ + D +L +A Sbjct: 1136 AAAKGLGERISQMLDEQR---KIAELRNLLDEIYNHSDEVTKVDLDSLSDKEILALANNL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++GVP++TPVFDGA E + ML +A L +GQ++LYDG TG+ FDRPVTVGY+Y+LKLN Sbjct: 1193 RTGVPMATPVFDGAKEAEVKRMLELAGLSTTGQTVLYDGRTGDEFDRPVTVGYMYILKLN 1252 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H++ DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1253 HLIDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1312 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LE+ Sbjct: 1313 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESD 1358 >gi|120553645|ref|YP_957996.1| DNA-directed RNA polymerase subunit beta [Marinobacter aquaeolei VT8] gi|158513041|sp|A1TYJ0|RPOB_MARAV RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|120323494|gb|ABM17809.1| DNA-directed RNA polymerase subunit beta [Marinobacter aquaeolei VT8] Length = 1358 Score = 1698 bits (4398), Expect = 0.0, Method: Composition-based stats. Identities = 713/1364 (52%), Positives = 978/1364 (71%), Gaps = 6/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P ++++P L+ +Q S+ +L M AP++R GL AAFKSV Sbjct: 1 MTYSYTEKKRIRKDFSKLPSVMEVPYLLSIQLDSFRDYLQMETAPEDRRETGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+VSY P FDV +C R +TYA PL++ +RLI++D + K+I Sbjct: 61 FPIVSYSGNAALEYVSYRIGEPVFDVKECQLRGVTYAAPLRVKVRLIIYDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFV+ G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEMPLMTENGTFVVNGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L LG SE++L F+ +S Sbjct: 179 RVIPYRGSWLDFEFDPKDAVFVRIDRRRKLPASILLRGLGYTSEQMLEMFFETSKFSLGA 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L + L G + + D D G ++E G+++T+ +K L++ G+ L + ++ Sbjct: 239 EVCKLELVPSRL-RGDIATFDIKDND-GNVIVEEGRRITARHIKQLEKAGITELEVPTEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+D+++ TGE+ +E + E+ + +I + ++DI LY + ++ ++ +TL Sbjct: 297 LYGRVLAKDMIDQSTGEVLVECNTELTEEVVTKILDAGVKDIETLYTNDLDCGPFMSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K+N RL Sbjct: 357 RIDPTRTPLEALVEIYRMMRPGEPPTKESAENLFNNLFFSEERYDLSAVGRMKLNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DII ++K L+ +RNG+G +DDIDNLGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 EESTGEGTLTHDDIIDVLKTLIAIRNGQGQVDDIDNLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVRERLSLAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N+YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARSNSYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT++VVYLSA+EE N IAQA+++ DE T+ELV R E + P E ++ Sbjct: 597 RKVVDGVVTDEVVYLSAIEESNYVIAQASAATDEGKRLTDELVTVRHQNEFTVAPPEAVN 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP LK++ P VGTG+E VA+ Sbjct: 657 FMDVSPRQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLKSQVPLVGTGVERTVAQD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A+R G++E VDA RIV+R + + +GVDIY L K+ RSNQNTC+NQR +V Sbjct: 717 SGVCVTARRGGVIESVDAARIVVRVNNEETEAGDAGVDIYNLTKYTRSNQNTCINQRSIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD + R D++ADGPS DLG+LALG+NM +AFMPW+GYNFEDS+LISE++V ED T+I Sbjct: 777 RQGDVIARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISEKVVQEDRLTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVGPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTS RVP+G GTV+DV++F R GI+K+ R++S+E+E Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSQRVPTGTRGTVIDVQVFTRDGIEKDARALSIEKE 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D DE I++ + RLM L GQ +SGP G KK L ++E PR+ W+ Sbjct: 957 QLDKYRKDLKDEYRIVEGATFERLMAALKGQEVISGP-GLKKGAKLEEAYLAELPRADWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++DE + +E + E K E RF +K K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLRMKDEALNELLEKSEQGLEDRKKEHEARFDDKKGKLQQGDDLAPGVLKIVKVYLAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S ++P EDMP+ + G VDIVLNPLGVPSRMNVGQ+ ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISAVMPIEDMPYDEFGNTVDIVLNPLGVPSRMNVGQVLETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG++I ++++ + ++ L + + D + + + Sbjct: 1136 AAAKGLGERISRMLDEQRKVAELRKLLDEIYN-HSDEVFKVDLDSLTDKEIFELCNNLRG 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E + ML +A LD +GQ+ LYDG TG+ FDRPVTVGY+Y+LKLNH+ Sbjct: 1195 GVPMATPVFDGAKEAEVKRMLELAGLDTTGQTKLYDGRTGDAFDRPVTVGYMYILKLNHL 1254 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 + DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1255 IDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LE+ Sbjct: 1315 NGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESE 1358 >gi|294675848|ref|YP_003576463.1| DNA-directed RNA polymerase subunit beta [Rhodobacter capsulatus SB 1003] gi|294474668|gb|ADE84056.1| DNA-directed RNA polymerase, beta subunit [Rhodobacter capsulatus SB 1003] Length = 1379 Score = 1698 bits (4397), Expect = 0.0, Method: Composition-based stats. Identities = 835/1382 (60%), Positives = 1069/1382 (77%), Gaps = 16/1382 (1%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ V G R+R+++GK E++++P+LIEVQKASYD FL A EG+Q F+ Sbjct: 1 MAQAYV--GQKRIRRYYGKIREVLEMPNLIEVQKASYDLFLRSGDADRPLDGEGIQGVFQ 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI F+ A+LEFV YE + PK+DVD+C+ RDLTY+ PLK+TLRLIVFDVDE TGA+ Sbjct: 59 SVFPIKDFNDNAILEFVKYELEKPKYDVDECMSRDLTYSAPLKVTLRLIVFDVDETTGAR 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHD+G+ SGKLL+ Sbjct: 119 SVKDIKEQDVYMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDRGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIP +G W+D EFD+KD++ RIDRRRK+PVT+ L ALG+D E I+ +Y + + Sbjct: 179 ACRIIPYRGSWLDFEFDAKDLVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVTFRA 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSL-KEKGVKFLGIT 299 G + + G + + L+D +GE ++++G+K+T ++K E V L + Sbjct: 239 EGKRGWVSKFFPERVRGTRPTYDLIDAASGEVILKAGEKVTPRMVKKWLDEAKVTELLLP 298 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYV 349 D + G Y A+DI+N TG IYIEAGD + + S++ + + I +IP L + Sbjct: 299 FDHILGRYCAKDIINERTGYIYIEAGDELTAEYDRDGQLVGGSVKTLLDNGITEIPCLDI 358 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D++N YIRNT+ DKN R AL+DIYRVMRPG+ T A SMF+ LFFDS++YDLS Sbjct: 359 DNINVGPYIRNTMAADKNMGRDGALMDIYRVMRPGEPPTVEAASSMFDTLFFDSERYDLS 418 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 VGRVKMNMRL+LD PD R +R+ DIIA IK LV+LR+GKG IDDID+LGNRRVRSVGE Sbjct: 419 AVGRVKMNMRLDLDAPDTQRTLRRADIIACIKGLVELRDGKGEIDDIDHLGNRRVRSVGE 478 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +++NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLS + Sbjct: 479 LMENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSLFMDQT 538 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +F Sbjct: 539 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGQNIGLINSLATF 598 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 ARVN YGFIETPYRKV DG+VT++VVY+SA EE IAQAN++LDE+G F +LV R Sbjct: 599 ARVNKYGFIETPYRKVHDGQVTDEVVYMSATEEMRHTIAQANATLDENGKFVNDLVSTRQ 658 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 AGE +L P E +D ID SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+ EAP Sbjct: 659 AGEFMLNPVEAVDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRNEAP 718 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 FVGTGME+ VA+ SGAAI+A+R GIV+QVDA RIVIR+ E +GVDIYRL KF+R Sbjct: 719 FVGTGMEATVARDSGAAIMARRGGIVDQVDASRIVIRANEDIGM-GDAGVDIYRLRKFKR 777 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 SNQ++ +NQRP+VKVGD V + ++ADGPSTD G+LALGRN++VAFMPW+GYN+EDS+LI Sbjct: 778 SNQSSTINQRPIVKVGDIVAKGQVVADGPSTDQGELALGRNVVVAFMPWNGYNYEDSILI 837 Query: 830 SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 SER+ +DVFTSIHIEE+EV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV Sbjct: 838 SERIHRDDVFTSIHIEEYEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVG 897 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 PGDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G GT+V+VR+FNRHG Sbjct: 898 PGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGAYGTIVEVRVFNRHG 957 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG--FKKSTV 1007 +DK+ER++ +ERE+IE LARD+DDE IL+RNIY+RL ++ G+ V GPK K + Sbjct: 958 VDKDERALQIEREEIERLARDRDDEMAILERNIYARLKTLILGKVTVKGPKNTSIKAGSE 1017 Query: 1008 LSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMP 1067 ++ +L++ R QWWQ A+++E + VE+L Q++ K LE RF +K+EK++ GDD+P Sbjct: 1018 ITEELLASLSRGQWWQLALENEADAKEVEALNDQFDAQKRALEHRFDDKVEKVRQGDDLP 1077 Query: 1068 PGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV 1127 PGV+++VKVFVA+KR +Q+GDKMAGRHGNKG+VS+++P EDMPFL DGTPVD+VLNPLGV Sbjct: 1078 PGVMKMVKVFVAVKRKLQAGDKMAGRHGNKGVVSKVVPIEDMPFLADGTPVDLVLNPLGV 1137 Query: 1128 PSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISD 1187 PSRMNVGQI ETH+GWA GLG +I + Y+ GD++P+R + G ++ + ++ Sbjct: 1138 PSRMNVGQILETHMGWASRGLGIRIDEALKAYRRTGDLTPVREEMRHGYGDETYEDVFAE 1197 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 +++ + AE + GVP++TPVFDGA E +N L A ++SGQSI++DG TG+ F R Sbjct: 1198 MENERFIECAEHVRGGVPIATPVFDGAKEADVNDALIRAGFNKSGQSIVFDGRTGDQFAR 1257 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 PVTVG Y LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA Sbjct: 1258 PVTVGVKYFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGA 1317 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 AY LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L +S Sbjct: 1318 AYTLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDSE 1377 Query: 1368 TK 1369 + Sbjct: 1378 EE 1379 >gi|260425426|ref|ZP_05779406.1| DNA-directed RNA polymerase, beta subunit [Citreicella sp. SE45] gi|260423366|gb|EEX16616.1| DNA-directed RNA polymerase, beta subunit [Citreicella sp. SE45] Length = 1378 Score = 1698 bits (4397), Expect = 0.0, Method: Composition-based stats. Identities = 831/1380 (60%), Positives = 1068/1380 (77%), Gaps = 14/1380 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SY+ FL P EG+ F+SV Sbjct: 1 MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYELFLKSGDQPQPSDGEGIMGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LEFV+YE + PK+DV++C+ RD+TY+ PLK+TLRLIVFD+DE TGAKS+ Sbjct: 61 FPIKDFNETAVLEFVNYELEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDIDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR- 241 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + YS R Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYNTVSYSLRR 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITS 300 G+ W + G + + LVD DTGE + E+ KK+T +K L ++G VK L + Sbjct: 241 GEGWVTKFFPE-RVRGTRPTYDLVDADTGEIIAEATKKVTPRAVKKLIDEGKVKQLLLPF 299 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKS----------LEEIFHSEIRDIPILYVD 350 + + G +VA+DI+N +TG IY+EAGD + L+E+ + I +IP+L +D Sbjct: 300 EQIVGKFVAKDIINEDTGAIYVEAGDELTWTVDKDGDVTGGSLKELIDAGITEIPVLDID 359 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++ AY+RNT+ DKN DR AL+DIYRVMRPG+ T A S+F+ LFFDS++YDLS Sbjct: 360 NITVGAYMRNTVAQDKNMDRNSALMDIYRVMRPGEPPTVEAASSLFDTLFFDSERYDLSA 419 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VGRVKMNMRLNL+ PD R + ++DI+ IK LV+LR+GKG +DDID+LGNRRVRSVGE+ Sbjct: 420 VGRVKMNMRLNLEKPDTQRTLDRDDIVKCIKALVELRDGKGEVDDIDHLGNRRVRSVGEL 479 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 ++NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 480 MENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTN 539 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FA Sbjct: 540 PLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFA 599 Query: 591 RVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA 650 RVN YGFIETPYR V + +VT++V Y+SA EE +AQAN+SLD+DG F E+V R + Sbjct: 600 RVNKYGFIETPYRVVRESQVTDEVHYMSATEEMRHTVAQANASLDDDGKFVNEMVNTRQS 659 Query: 651 GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF 710 G+ L PRE +D ID SPKQ+VS+ ASLIPFLENDD+NR LMG NMQRQAVP L++EAP Sbjct: 660 GDYTLAPRESVDLIDVSPKQLVSVGASLIPFLENDDANRALMGANMQRQAVPTLRSEAPL 719 Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRS 770 VGTG+E VA SGAAI A RAGIV+QVDA RIVIR+ E L+ +GVDIYR+ KFQRS Sbjct: 720 VGTGIEGKVAIDSGAAIQAHRAGIVDQVDAQRIVIRATED-LELGDAGVDIYRMRKFQRS 778 Query: 771 NQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS 830 NQNTC+NQ+PLVKVG V + +++ADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LIS Sbjct: 779 NQNTCINQKPLVKVGQLVEKGEVVADGPSTDMGELALGKNVIVAFMPWNGYNYEDSILIS 838 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 ER+ +DVFTS+HIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V P Sbjct: 839 ERIARDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEP 898 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 GDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG+ Sbjct: 899 GDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGV 958 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSS 1010 +K+ER++ +ERE++E LARD+DDE ILDRNIY+RL +++ G+ AV GPKG + ++ + Sbjct: 959 EKDERALQIEREEVERLARDRDDELAILDRNIYARLKDLILGKTAVKGPKGVRPNSEIDE 1018 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 +L++ R QWWQ A+ +E+ + VE+L QYE K L+ RF++K+EK++ GDD+PPGV Sbjct: 1019 ELLNSLSRGQWWQLALAEEQDAQIVEALHEQYEAQKRTLDARFEDKVEKVRRGDDLPPGV 1078 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +++VKVFVA+KR +Q GDKMAGRHGNKG++SR++P EDMPFL+DGTPVD LNPLGVPSR Sbjct: 1079 MKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRVVPMEDMPFLEDGTPVDFCLNPLGVPSR 1138 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MNVGQI ETH+GWA GLG KI + DY+ +GD++P+R + G + E I+ D+ Sbjct: 1139 MNVGQILETHMGWASRGLGIKIDEALQDYRRSGDLTPVREAMRIAYGDDVYEEGIAGMDE 1198 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 + ++ A GVP++TPVFDGA E +N L A D SGQS L+DG +GE F R VT Sbjct: 1199 EHLVEAAGNVTRGVPIATPVFDGAKEADVNDALTRAGFDTSGQSRLFDGRSGEEFARRVT 1258 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1259 VGMKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1318 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQEMLT+KSDDV GRT+VYESIV G D +E G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1319 LQEMLTVKSDDVAGRTKVYESIVKGEDNYEAGVPESFNVLVKEVRGLGLNMELLDAEDEE 1378 >gi|259416869|ref|ZP_05740789.1| DNA-directed RNA polymerase, beta subunit [Silicibacter sp. TrichCH4B] gi|259348308|gb|EEW60085.1| DNA-directed RNA polymerase, beta subunit [Silicibacter sp. TrichCH4B] Length = 1379 Score = 1697 bits (4396), Expect = 0.0, Method: Composition-based stats. Identities = 837/1380 (60%), Positives = 1069/1380 (77%), Gaps = 13/1380 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++D+P+LIEVQK+SYD FL P EG++ F+SV Sbjct: 1 MAQTFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDEPQPLDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV+Y + PK+DVD+C+ RD+TY+ PLK+TLRLIVFDVDE TGAKS+ Sbjct: 61 FPIKDFNETSVLEFVNYALERPKYDVDECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVDFKLEK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + LVD TGE + E+GKK+T +K + ++G + L + + Sbjct: 241 SRGWVTPFFPERVRGTRPTYDLVDAATGEIICEAGKKVTPRAVKKMIDEGTITELLVPFE 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G YVA+DI+N E G IY+EAGD + + +++E+ + I DIP+L +D+ Sbjct: 301 HIVGKYVAKDIINEENGAIYVEAGDELTLEYDKDGDIIGGTVKELLDAGITDIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNT+ DKN R AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 VNVGPYMRNTMAADKNMGRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL LD D R +RKEDI+A IK LV+LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLALDAEDTQRTLRKEDIVACIKALVELRDGKGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V +G+VT++V Y+SA EE +AQAN++LDED F +LV R +G Sbjct: 601 VNKYGFIETPYRVVKEGQVTDEVHYMSATEEMRHTVAQANANLDEDNRFVNDLVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 DYTLAPNESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E +VA+ SGAAI+AKRAG+++Q+DA RIVIR+ L+ +GVDIYR+ KFQRSN Sbjct: 721 GTGIEEIVARDSGAAIMAKRAGVIDQIDAQRIVIRATSD-LELGDAGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVG V + ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGQTVEKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++L G+ AV GPKG + +TV+ D Sbjct: 960 KDERALQIEREEVERLARDRDDELGILDRNIYARLRDLLLGKTAVKGPKGVRGNTVIDED 1019 Query: 1012 LISE-YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 L+ R QWW A+++E+ + +E+L QYE K L+ RF++K+EK++ GDD+PPGV Sbjct: 1020 LLDNQLTRGQWWMLALEEEQDAQILEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGV 1079 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +++VKVF+A+KR +Q GDKMAGRHGNKG++SR++P EDMPFL DGTPVD LNPLGVPSR Sbjct: 1080 MKMVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPMEDMPFLADGTPVDFCLNPLGVPSR 1139 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MNVGQI ETH+GWA GLG KI + DY+ GD++P+R + + G + E IS D+ Sbjct: 1140 MNVGQILETHMGWAARGLGLKIDDALQDYRRTGDLTPVRDAMREAYGENVYEEGISSMDE 1199 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 ++ A GVP++TPVFDGA E+ +N L A D+SGQSIL+DG TGE F RPVT Sbjct: 1200 TQLIEAAGNVTRGVPIATPVFDGAKEDDVNDALVRAGFDQSGQSILFDGRTGEQFARPVT 1259 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1260 VGIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1319 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1320 LQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVEE 1379 >gi|254461493|ref|ZP_05074909.1| DNA-directed RNA polymerase, beta subunit [Rhodobacterales bacterium HTCC2083] gi|206678082|gb|EDZ42569.1| DNA-directed RNA polymerase, beta subunit [Rhodobacteraceae bacterium HTCC2083] Length = 1378 Score = 1697 bits (4396), Expect = 0.0, Method: Composition-based stats. Identities = 837/1379 (60%), Positives = 1070/1379 (77%), Gaps = 12/1379 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL P EG++ F+SV Sbjct: 1 MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLNSGDEPIPLDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV+YE + PK+DV++C RD+TYA PLK+TLRLIVF++DE TGAKS+ Sbjct: 61 FPIKDFNETSILEFVNYELEKPKYDVEECQQRDMTYAAPLKVTLRLIVFEIDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L +LG+D E I+ +Y + + + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYSLGLDQEGIMDAYYDTVEFKLKK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + LVD TGE + E+ KK+T +K L + G V L I D Sbjct: 241 GKGWVTKFFPERVRGTRPTYDLVDAKTGEVIAEANKKVTPRAVKKLIDAGDVTDLLIPYD 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKS----------LEEIFHSEIRDIPILYVDS 351 + G ++A+DI+N ETG IY EAGD + + L+E+ + I D+PIL +D+ Sbjct: 301 AIVGKFIAKDIINEETGAIYAEAGDELTLEMDKDGDVIGGSLKELIDAGITDLPILDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN AY+RNT+ DKN +R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 VNVGAYMRNTMAADKNMNRETALMDIYRVMRPGEPPTVEAASNLFDTLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL+LD D R +RKEDI++ IK LV LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLDLDAEDTQRTLRKEDIVSCIKALVHLRDGKGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR V +G V+++V Y+SA EE +AQAN++LDE+ F +LV R +G Sbjct: 601 VNKYGFIETPYRVVNNGVVSDEVHYMSATEEMRHTVAQANANLDENMKFVNDLVSTRKSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + L P E +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+AEAP V Sbjct: 661 DYTLSPNENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGAAI+AKRAGI++QVDA RIV+R+ L+ +GVDIYR+ KFQRSN Sbjct: 721 GTGIEEVVARDSGAAIMAKRAGIIDQVDAQRIVVRATHD-LELGDAGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNT +NQRPLVKVGD V++ ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTTINQRPLVKVGDTVQKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RVSRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE VILDRNIY+RL ++ G+ AV GPKG K + ++ + Sbjct: 960 KDERALQIEREEVERLARDRDDELVILDRNIYARLKGMIMGKVAVKGPKGVKPNAEITEE 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ R QWWQ A++DEK + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLETLTRGQWWQLALKDEKDAQIVEALNEQYEVQKRTLDSRFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGVPSRM Sbjct: 1080 KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA GLG I + DY+ +GD++P++ + G + E + DDD Sbjct: 1140 NVGQILETHMGWAARGLGLNIDDALGDYRRSGDLTPVKEAMRLAYGDDVYAEGLEGLDDD 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 ++L A +GVP++TPVFDGA E +N L+ A ESGQS+L+DG TGE F RPVTV Sbjct: 1200 ALLETAGNVTNGVPIATPVFDGAKEHDVNDSLKRAGFSESGQSVLFDGRTGEQFARPVTV 1259 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1260 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 QEMLT+KSDDV GRT+VYESIV G D +E G PESFNVLVKE++ LGL+++L ++ + Sbjct: 1320 QEMLTVKSDDVAGRTKVYESIVKGEDNYEAGVPESFNVLVKEVRGLGLNMELLDAEEEE 1378 >gi|88704391|ref|ZP_01102105.1| RNA polymerase, beta-subunit [Congregibacter litoralis KT71] gi|88701442|gb|EAQ98547.1| RNA polymerase, beta-subunit [Congregibacter litoralis KT71] Length = 1357 Score = 1697 bits (4395), Expect = 0.0, Method: Composition-based stats. Identities = 717/1365 (52%), Positives = 978/1365 (71%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P ++D+P L+ +Q SY F ++ +ER + GL AAFKSV Sbjct: 1 MPYSYTEKKRIRKDFGTMPTVMDVPYLLAIQLDSYRKFTQQGVSLEERLDYGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C R +TY+ L++ +RLI++D + K+I Sbjct: 61 FPIVSYSGNAALEYVDYRLGTPVFDVSECQLRGVTYSCSLRVKVRLIIYDK--ESSNKTI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD++ RIDRRRK+P T L ALG +SEEILS FY V++ Sbjct: 179 RIIPYRGSWLDFEFDPKDMVFARIDRRRKLPATILLRALGYESEEILSMFYDFNVFTVDA 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + + G + ++ + ++E G+++T+ ++ L++ G L + + Sbjct: 239 DGGYNMELIPERLRGDVAAFDIMIGK--KVIVEQGRRITARHIRELEKAGATELPVPPEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ ++GE+ E ++E+ L ++ ++I I LY + ++ +I +TL Sbjct: 297 LHGRALAKNIVDEKSGEVLFECNTEVNEEVLSQLAEAKITAIETLYTNELDCGPFISHTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N RL Sbjct: 357 RQDSTRNELEALVEIYRMMRPGEPPTKESAENLFQNLFFSPDRYDLSGVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +EDI+ +++ LV +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 417 EEIVGEGTLSREDIVDVLQTLVGIRNGKGMVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+ E IAQA++ LD F ++L+ R E ++ E+ID Sbjct: 597 RKVIDGVVTDEIEYLSAINEAEHVIAQASAELDSKNRFVDDLIAVRHLNEFTVMDPERID 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME VA Sbjct: 657 YMDVSPQQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERFVAAD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G ++ VDA RIV+R + ++ + VDIY L K+ RSNQNTC+NQRP+V Sbjct: 717 SGVCVVAKRPGFIDSVDASRIVVRVDDSEVGAGEAPVDIYNLTKYTRSNQNTCINQRPIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V R DI+ADGPS DLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 777 SRGDTVARGDILADGPSIDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVKEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEI+ DIPNV E L N+DE GI+ +GAEV+ GDILVGK+TPKG Sbjct: 837 HIQELTCIARDTKLGSEEISGDIPNVGEGALSNLDESGIVYIGAEVDAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPS GTV+DV++F R G++K+ R+ +E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSSTKGTVIDVQVFTRDGLEKDARAKHIEKT 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E I + +S L ++ G VSG G K T L+++++ R QW+ Sbjct: 957 QLDEYRKDLKEEFRIYEEATFSWLGNLISGAKTVSG-GGLSKGTKLTAEVLEGLDREQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + + ++ + S + Q E LE+RF++K K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLKLDNPELNEALASAQNQLEEQNKHLEERFEDKKNKLQSGDDLAPGVLKIVKVYLAVKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ ++G PVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISVIMPVEDMPYDENGEPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG-SHTEKISDYDDDSVLRVAEQWK 1201 A GLG KI ++ + + DI R FLE + G I D+ V+ +A+ + Sbjct: 1136 MAARGLGDKINEMLEEQRKTADI---RKFLESIYNNGAGRAADIKGLKDNEVMDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TP FDGA EE+I ++L +A LD SGQ LYDG +G+ FDRPVTVGY+YMLKLNH Sbjct: 1193 AGVPMATPAFDGAAEESIKALLELAGLDRSGQVTLYDGRSGDAFDRPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LE+ Sbjct: 1313 VAGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESE 1357 >gi|92112547|ref|YP_572475.1| DNA-directed RNA polymerase subunit beta [Chromohalobacter salexigens DSM 3043] gi|122420789|sp|Q1R0I2|RPOB_CHRSD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|91795637|gb|ABE57776.1| DNA-directed RNA polymerase subunit beta [Chromohalobacter salexigens DSM 3043] Length = 1358 Score = 1696 bits (4393), Expect = 0.0, Method: Composition-based stats. Identities = 729/1363 (53%), Positives = 988/1363 (72%), Gaps = 7/1363 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q SY FL + A +ER + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYFDFLQQDRAIEERLDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG A LE+VSY F P FDV +C R +TY+ PL++ +RLI++D D T K+I Sbjct: 61 FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDKDSST--KAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFV+ G +R++VSQLHRSPG+ FDHDKG++ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVVNGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P T L ALGM +EEIL TF+ + Sbjct: 179 RIIPYRGSWLDFEFDPKDNVYVRIDRRRKLPATVLLRALGMSAEEILETFFDTSTFHIEK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L + L G + + D + G ++E G+++T ++ +++ G++ L + + Sbjct: 239 SGFSVELVPSRL-RGETATFDIKDGE-GNLIVEEGRRITQKHIRQMEKAGLERLDVPMEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+D V+ TGE+ E I + LE+I + I + LY + ++ ++ +TL Sbjct: 297 LFGKTLAKDQVDPNTGELVCECNTEITPELLEKIGQAGITTLETLYTNDLDTGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +AL++IYR+MRPG+ T AE++F+ LFF D+YDLS VGR+K N RL Sbjct: 357 KIDTTHSQLEALVEIYRMMRPGEPPTKEAAETLFHNLFFTEDRYDLSGVGRMKFNRRLRR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DI+ +++ L+++RNG G +DDID+LGNRR+R VGEM +NQ+R+GL+R+ Sbjct: 417 EGDTGSGVLDNQDILDVMRELINIRNGFGEVDDIDHLGNRRIRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +++ N+YGF+ETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETLEGPNIGLINSLATYSHTNSYGFLETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D +VT++VV+LSA+EE + IAQA++++DE T++LV R GE + +K+ Sbjct: 597 RKVVDRQVTDEVVHLSAIEEGDFIIAQASATVDESNKLTDDLVQVRHKGETTFMAPDKVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SP+QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP LKAE P VGTGME VA+ Sbjct: 657 LMDVSPRQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLKAEKPLVGTGMERFVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VA+R G+++ VDA RIV+R E ++ +GVDIY L K+ RSNQNTC+NQRP+V Sbjct: 717 SGVCAVARRGGVIDSVDAKRIVVRINEDEIIGGEAGVDIYNLTKYVRSNQNTCMNQRPIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD V R DI+ADGPS D+GDLALG+NM +AFMPW+GYNFEDS+LISER+V ED FTSI Sbjct: 777 RPGDVVARGDILADGPSVDMGDLALGQNMRMAFMPWNGYNFEDSILISERVVEEDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLG EEI+ DIPNV E L +D+ GI+ +GAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVSRDTKLGAEEISSDIPNVGEAALGKLDDAGIVYIGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLR P+G+ GTV+DV++F R G++K+ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVEKDSRALSIEQS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D + I + + RL L GQ GPK KK L + E PRSQW+ Sbjct: 957 QLDEVRKDLQETYRIAEEATFERLKRALIGQPVNGGPK-LKKGDTLDEAYLDELPRSQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +QDE + + Q E + +++RF++K K+ GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLRMQDESLNELLAQADEQLENRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYLAVKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQSGDKMAGRHGNKG++S I+P EDMPF +G PVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQSGDKMAGRHGNKGVISSIMPIEDMPFDDNGEPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG KI ++ D + ++ +R FL +V T + E I DD ++ +A+ + Sbjct: 1136 MAANGLGVKIDRMLRDAR-QQQVAEIRDFLGQVYNTAETRQEDIDSLSDDEIITLAKNLR 1194 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 SGVPV+TPVFDGA E I +L +ADL +SGQ LYDG TG+ FDR VTVGY+YMLKLNH Sbjct: 1195 SGVPVATPVFDGAKEHEIKHLLTLADLPDSGQMTLYDGRTGDAFDRQVTVGYMYMLKLNH 1254 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1255 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1314 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 V GRT++Y++IV G+ + + G PESFNVLVKE+++LG+ I+LE Sbjct: 1315 VEGRTKMYKNIVDGDHSMQAGMPESFNVLVKEIRSLGIDIELE 1357 >gi|254516898|ref|ZP_05128956.1| DNA-directed RNA polymerase, beta subunit [gamma proteobacterium NOR5-3] gi|219674403|gb|EED30771.1| DNA-directed RNA polymerase, beta subunit [gamma proteobacterium NOR5-3] Length = 1357 Score = 1696 bits (4391), Expect = 0.0, Method: Composition-based stats. Identities = 722/1365 (52%), Positives = 979/1365 (71%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P ++D+P L+ +Q SY F ++ +ER + GL AAFKSV Sbjct: 1 MPYSYTEKKRIRKDFGTMPTVMDVPYLLAIQLDSYRKFTQQGVSLEERLDYGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C R +TY+ L++ +RLI++D + K+I Sbjct: 61 FPIVSYSGNAALEYVDYRLGTPVFDVSECQLRGVTYSCSLRVKVRLIIYDK--ESSNKTI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD++ RIDRRRK+P T L ALG +SEEILS FY V++ Sbjct: 179 RIIPYRGSWLDFEFDPKDMVFARIDRRRKLPATILLRALGYESEEILSMFYDFNVFTVDA 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + + G + ++ + ++E G+++T+ ++ L++ G K L + + Sbjct: 239 DGGFNMELIPERLRGDVAAFDIMVGK--KVIVEQGRRITARHIRELEKAGAKELPVPPEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ ++GE+ E + E+ L ++ ++I I LY + ++ +I +TL Sbjct: 297 LHGRALAKNIVDEKSGEVLFECNTEVSEEVLTQLADAKITTIETLYTNELDCGPFISHTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++F LFF SD+YDLS VGR+K N RL Sbjct: 357 RQDSTRNELEALVEIYRMMRPGEPPTKESAENLFQNLFFSSDRYDLSGVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +EDI+ +++ LV +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 417 EEIVGEGTLSREDIVDVLQTLVGIRNGKGMVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+D+ YLSA+ E IAQA++ LD F +EL+ R E ++ +++D Sbjct: 597 RKVVDGVVTDDIEYLSAINEAEHVIAQASAELDSKNRFVDELIAVRHLNEFTVMDPDRVD 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME VA Sbjct: 657 YMDVSPQQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERFVAAD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+++ VDA RIV+R + ++ P + VDIY L K+ RSNQNTC+NQRP+V Sbjct: 717 SGVCVVAKRPGVIDSVDASRIVVRVDDSEVGPGEAPVDIYNLTKYTRSNQNTCINQRPIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V R DI+ADGPS DLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 777 GRGDSVARGDILADGPSIDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVKEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEI+ DIPNV E L N+DE GI+ +GAEV+ GDILVGK+TPKG Sbjct: 837 HIQELTCIARDTKLGSEEISADIPNVGEGALSNLDESGIVYIGAEVDAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPS GTV+DV++F R G++K+ R+ +E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSSTKGTVIDVQVFTRDGLEKDARAKHIEKT 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E I + YS L ++ G VSG G K T L+ +++E R QW+ Sbjct: 957 QLDEYRKDLKEEFRIYEEATYSWLGNLIKGAKTVSG-GGLSKGTQLTDAVLAELDREQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + + ++ + S + Q E LE+RF++K K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLKLDNAELNDALASAQNQLEEQNKHLEERFEDKKNKLQSGDDLAPGVLKIVKVYLAVKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ ++G PVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISVIMPVEDMPYDENGEPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG-SHTEKISDYDDDSVLRVAEQWK 1201 A GLG KI ++ + + DI R FLE + G I +D VL +A+ Sbjct: 1136 MAARGLGNKINEMLEEQRKTADI---RKFLESIYNNGAGRGADIKGLNDGEVLELAKNLT 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TP FDGA EE+I +L +A ++ESGQ LYDG TG+ FDR VTVGY+YMLKLNH Sbjct: 1193 AGVPMATPAFDGAAEESIKELLELAGMNESGQVRLYDGRTGDAFDRDVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LE+ Sbjct: 1313 VAGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESE 1357 >gi|254454470|ref|ZP_05067907.1| DNA-directed RNA polymerase, beta subunit [Octadecabacter antarcticus 238] gi|198268876|gb|EDY93146.1| DNA-directed RNA polymerase, beta subunit [Octadecabacter antarcticus 238] Length = 1379 Score = 1695 bits (4390), Expect = 0.0, Method: Composition-based stats. Identities = 829/1381 (60%), Positives = 1062/1381 (76%), Gaps = 15/1381 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F G R+RK++GK E++++P+LIEVQK+SYD FL + EG++ F+SV Sbjct: 1 MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDSETPLDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFV YE + PK+DV++C RD+TYA PLK+TLRLIVFD+D+ TG+KS+ Sbjct: 61 FPIKDFNETSVLEFVKYELEKPKYDVEECQQRDMTYAAPLKVTLRLIVFDMDDDTGSKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG++ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-- 240 RIIP +G W+D EFD+KD++ RIDRRRK+PVT+ L ALG+D E I++ +Y + Y+ Sbjct: 181 RIIPYRGSWLDFEFDAKDLVFCRIDRRRKLPVTTLLYALGLDQEMIMNAYYDHVDYTFDA 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGIT 299 + W G + LVD TGE V E+GKK+T +K+L ++G VK L + Sbjct: 241 EANSWKTKFFPE-RARGTRPLFDLVDAKTGEVVAEAGKKITPRAVKALIDEGNVKDLLVP 299 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKS----------LEEIFHSEIRDIPILYV 349 D + G + A DI+N ETG IY+EAGD + + L+E+ + I+ IP+L + Sbjct: 300 YDQILGKFAANDIINEETGAIYVEAGDELTLEMDKAGDVIGGTLKELVDAGIKTIPVLDI 359 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D++N Y+RNT+ DKN R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS Sbjct: 360 DNINVGPYMRNTMAADKNMGRETALMDIYRVMRPGEPPTVDAASNLFDSLFFDSERYDLS 419 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 VGRVKMNMRL LD D +R +RKEDI++ IK LV LR+GKG IDDID+LGNRRVRSVGE Sbjct: 420 AVGRVKMNMRLALDAEDTIRTLRKEDIVSCIKALVMLRDGKGDIDDIDHLGNRRVRSVGE 479 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +++NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + Sbjct: 480 LMENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQT 539 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +F Sbjct: 540 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATF 599 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 ARVN YGFIETPYR V DG VT++V Y+SA EE +AQAN++LDE+ F +LV R Sbjct: 600 ARVNKYGFIETPYRVVTDGVVTDEVHYMSATEEMRHTVAQANANLDENMRFVNDLVSTRQ 659 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 GE L P E ++ ID SPKQ+VS+AASLIPFLENDD+NR LMG NM RQAVPLL+AEAP Sbjct: 660 NGEYTLAPSENVNLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQAVPLLQAEAP 719 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 VGTG+E VVA+ SGAAI+AKRAGI++QVDA RIV+R+ L+ GVDIYR+ KFQR Sbjct: 720 LVGTGIEEVVARDSGAAILAKRAGIIDQVDATRIVVRATSD-LEIGDPGVDIYRMRKFQR 778 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 SNQNTC+NQRPLVKVGD V + ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LI Sbjct: 779 SNQNTCINQRPLVKVGDTVLKAEVIADGPSTDIGELALGKNVIVAFMPWNGYNYEDSILI 838 Query: 830 SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 SER+ +DVFTSIHI+EFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV Sbjct: 839 SERITRDDVFTSIHIDEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVE 898 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 PGDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG Sbjct: 899 PGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHG 958 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 ++K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ GP+G K + Sbjct: 959 VEKDERALQIEREEVERLARDRDDEMTILDRNIYARLRSMIEGKTVAKGPRGIKTGANID 1018 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + ++ + PRS WWQ A+++E + VE+L QYE +K +L+ RF++K+EK++ GDD+PPG Sbjct: 1019 AAMLDDMPRSHWWQIALKEEDDAQIVEALNEQYEAAKKLLDARFEDKVEKVRRGDDLPPG 1078 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V+++VKVFVA+KR +Q GDKMAGRHGNKG++S+++P EDMPFL+DGTPVD LNPLGVPS Sbjct: 1079 VMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLEDGTPVDFCLNPLGVPS 1138 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYD 1189 RMNVGQI ETH+GWA GLG +I + Y+ +GD++P+R ++ G + + I D Sbjct: 1139 RMNVGQILETHMGWAARGLGIEIDEALGAYRRSGDLTPVREAMKIAYGDNVYEDGIKDMT 1198 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 + ++ A GVP++TPVFDGA E +N L A D SGQSIL+DG TGE F R V Sbjct: 1199 EAELVEAAGNVIHGVPIATPVFDGAKEADVNDSLTRAGFDTSGQSILFDGRTGEQFSRKV 1258 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TVG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1259 TVGVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1318 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 LQEMLT+KSDDV GRT+VYESIV G D +E G PESFNVLVKE++ LGL+++L ++ Sbjct: 1319 TLQEMLTVKSDDVAGRTKVYESIVKGEDNYEAGVPESFNVLVKEVRGLGLNMELLDAEED 1378 Query: 1370 N 1370 Sbjct: 1379 E 1379 >gi|83648859|ref|YP_437294.1| DNA-directed RNA polymerase subunit beta [Hahella chejuensis KCTC 2396] gi|109903916|sp|Q2S905|RPOB_HAHCH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|83636902|gb|ABC32869.1| DNA-directed RNA polymerase, beta subunit [Hahella chejuensis KCTC 2396] Length = 1357 Score = 1695 bits (4390), Expect = 0.0, Method: Composition-based stats. Identities = 738/1363 (54%), Positives = 992/1363 (72%), Gaps = 9/1363 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D+P L+ +Q SY FL ++A ++R GL AAFKSV Sbjct: 1 MTYSYTEKKRIRKDFGKLPAVMDVPYLLSIQLDSYHDFLQQDVAIEDRQEVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG A LE+VSY P FDV +C R +TYA PL++ +RLI++D + T K+I Sbjct: 61 FPIVSFSGNAALEYVSYRLGQPVFDVAECQLRGVTYAAPLRVKVRLIIYDKESST--KAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEVPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L ALG ++E+L F+ ++ G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPATILLRALGYAADEMLEMFFENSLFEVEG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L + L G + D D G ++E G+++T+ ++ +++ G+K L + S Sbjct: 239 GEYFLDLVPSRL-RGDIAIFEIKD-DEGNLIVEEGRRVTARHIRQMEKAGLKRLRVPSSY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G A +I + TGE+ +E I + ++E+I + I+ I LY + ++ ++ +TL Sbjct: 297 LLGKVTATNIADPSTGEVIVECNTEITDDAIEKIEKAGIKRIETLYTNDLDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + + +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N RL Sbjct: 357 RIDATRSQLEALVEIYRMMRPGEPPTKESAENLFNNLFFSEERYDLSAVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + + DII +++ L+D+RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 417 EETEGLGVLSHSDIIDVLRTLIDIRNGKGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNTYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+D+ YLSA+EE + IAQA++++DE+G +ELV R E ++P EK+ Sbjct: 597 RKVVDGLVTDDIEYLSAIEESDYVIAQASAAVDENGRLIDELVTVRHKNEFTVMPPEKVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP LKAE P VGTGME VA+ Sbjct: 657 LMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKAEKPLVGTGMERYVAQD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+V VDA RIV+R + + + +GVDIY L K+QRSNQNTC+NQR LV Sbjct: 717 SGVCVVARRGGVVVSVDAARIVVRVSDDETEAGDAGVDIYNLTKYQRSNQNTCINQRSLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GDEV R D++ADGPS DLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 777 MEGDEVARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEE+T DIPNV E L +D+ GII +GAEV PGDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEVTADIPNVGESALAKLDDSGIIYIGAEVEPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRV +G+ GTV+DV++F R G++K++R+ +E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVSTGMRGTVIDVQVFTRDGVEKDQRAKEIEQT 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ +D +DE I++ + RL L GQ+ + GP G KK L+ + + + +W+ Sbjct: 957 ELNKFRKDLNDEYKIVEGATFERLRSALLGQSVIGGP-GLKKGDTLTEVHFNAFEKEEWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE++ +E + Q + + +EDR+++K K+Q GDD+ PGVL++VKV+VA+KR Sbjct: 1016 KLNMADEQLNELLEKAEGQLQERRKSIEDRYEDKKRKLQSGDDLAPGVLKIVKVYVAVKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I P EDMP+ + G PVDIVLNPLGVPSRMNVGQ+ ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISAIKPVEDMPYDEQGNPVDIVLNPLGVPSRMNVGQVLETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG KI ++ + K +I R FL ++ G E + D VL +A K Sbjct: 1136 AAAKGLGDKINRMLAEQKQAAEI---RKFLHEIYNGIGGRNEDLDSLSDSEVLVLAANLK 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E+ I MLR+AD+D+SGQ LYDG TGE F+R VTVGY+YMLKLNH Sbjct: 1193 KGVPMATPVFDGAKEKEIKEMLRLADMDDSGQVWLYDGRTGERFERQVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 V GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELE 1355 >gi|296533981|ref|ZP_06896498.1| DNA-directed RNA polymerase subunit beta [Roseomonas cervicalis ATCC 49957] gi|296265694|gb|EFH11802.1| DNA-directed RNA polymerase subunit beta [Roseomonas cervicalis ATCC 49957] Length = 1393 Score = 1695 bits (4389), Expect = 0.0, Method: Composition-based stats. Identities = 835/1391 (60%), Positives = 1053/1391 (75%), Gaps = 30/1391 (2%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 A F G R+RK FG+ PE+ +P+LI+VQ+ASY+ FL M + PD R N GLQ FKS Sbjct: 3 AITKSFTGRKRIRKSFGRLPEVAPMPNLIDVQRASYEAFLQMGVDPDARTNTGLQEVFKS 62 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI F+G LEFV YE + PK+DV++C+ R LT+A PLK+ LRLIV+DVDE TG++S Sbjct: 63 VFPIDDFAGRGRLEFVQYELEEPKYDVEECIQRGLTFAAPLKVRLRLIVWDVDEDTGSRS 122 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 ++DIKEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 123 VRDIKEQDVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFA 182 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL-------------------- 221 R+IP +G W+D EFD+KDI +VR+DR+RK+P T+ L AL Sbjct: 183 ARVIPYRGSWLDFEFDAKDICYVRVDRKRKLPATTLLYALESARTEALRAERGAALEPGE 242 Query: 222 --GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK 279 GMD+EEIL+TFY ++V+S+ W P D G K+ +LVD TGE V E K Sbjct: 243 VRGMDAEEILNTFYGQVVFSRGPKGWSRPFEP-DAFRGVKLIENLVDAATGEVVAERDTK 301 Query: 280 LTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHS 339 LT L + + E G K + + L G YVAED+V+ TGEI+ EAGD + E L I + Sbjct: 302 LTPRLARKIAEAGTKEVLVGRADLLGRYVAEDLVDLTTGEIWAEAGDELTEPKLAAIEQA 361 Query: 340 EIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL 399 I +P L +D ++RNTL DKN R +AL+DIYRVMRPG+ T AE++F L Sbjct: 362 GIDALPTLAIDQ-TVGPWLRNTLAVDKNGSRDEALMDIYRVMRPGEPPTPETAEALFRGL 420 Query: 400 FFDSDKYDLSTVGRVKMNMRLNL---DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 FFD+++YDLSTVGRVKMNMRL + PD +R +RK+DIIA ++ L++L++GKG IDDI Sbjct: 421 FFDAERYDLSTVGRVKMNMRLGFTLDEVPDHIRVLRKQDIIATVRTLLELKDGKGQIDDI 480 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEF 516 DNLGNRRVRSVGE+++NQYR+GLLRMER+IKER+ SVDID+VMP DLINAKP +AV EF Sbjct: 481 DNLGNRRVRSVGELMENQYRVGLLRMERAIKERMGSVDIDTVMPHDLINAKPAAAAVREF 540 Query: 517 FCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSE 576 F SSQLSQ + N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET E Sbjct: 541 FGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPE 600 Query: 577 GHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLD- 635 G NIGL++SL +FA+VN YGFIETPYR V DGK+ + YLSAMEEE +AQA++ ++ Sbjct: 601 GPNIGLINSLATFAKVNKYGFIETPYRLVKDGKIVGEPRYLSAMEEEKLVVAQADAEVNA 660 Query: 636 EDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCN 695 E G F +LV R G+ LV E++ ID SPKQ+VS+AA+LIPFLENDD+NR LMG N Sbjct: 661 ESGEFLSDLVSVRQGGDFRLVKPEEVTAIDVSPKQLVSVAAALIPFLENDDANRALMGSN 720 Query: 696 MQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPS 755 M RQAVPL++++AP VGTGMES VA+ SGA IVA+R G+V+ +D RIV+R+ + D + Sbjct: 721 MMRQAVPLVRSDAPLVGTGMESAVARDSGATIVARRGGVVDSIDGARIVVRAT-NEEDGT 779 Query: 756 TSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAF 815 T GVDIYRL KFQRSNQ+TC+NQRPLVKVGD+V DIIADGPST+LG+LALGRN+LVAF Sbjct: 780 TRGVDIYRLRKFQRSNQSTCINQRPLVKVGDQVAPGDIIADGPSTELGELALGRNVLVAF 839 Query: 816 MPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKN 875 MPW+GYNFEDS+LISER+ +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE L+N Sbjct: 840 MPWNGYNFEDSILISERIAKDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRN 899 Query: 876 IDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGV 935 +DE GI+ VGAEVNPGDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G Sbjct: 900 LDEAGIVYVGAEVNPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGT 959 Query: 936 SGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNA 995 +GTVVDVR+FNR G+DK+ER+++++R +IE LA+D+DDE+ I +R+ +SRL E L Q A Sbjct: 960 TGTVVDVRVFNRRGVDKDERAMAIDRAEIERLAKDRDDEKAIQERSFHSRLREKLLNQKA 1019 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G KG K T+++ +++ ++ R+ W Q VQD+ V +E+LK +++ + L+ RF++ Sbjct: 1020 SGGFKGVKAGTLINDEVLDQFARATWRQIGVQDDAVMVEIEALKREFDAAVEKLQKRFES 1079 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 K+EK+Q GD++PPGV+++VKVF+A+KR +Q GDKMAGRHGNKG+VSR++P EDMPFL+DG Sbjct: 1080 KVEKLQRGDELPPGVMKMVKVFIAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDG 1139 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISP-LRSFLEK 1174 T VD+VLNPLGVPSRMNVGQI ETHLGWAC +GK I L+ DY+ G L L Sbjct: 1140 TSVDLVLNPLGVPSRMNVGQILETHLGWACANIGKSIGELVEDYRRAGAAREALLEKLRD 1199 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 V G + I D +D ++ + E + GVP++TPVFDGA I ML A LD SGQS Sbjct: 1200 VYGDEIYGRDIEDMSEDQLIELGENLRKGVPIATPVFDGARMSDIERMLDKAGLDTSGQS 1259 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 L DG TGE F+R VTVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1260 RLIDGRTGEYFERKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRF 1319 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV D+FE G PESFNVLVKE+ Sbjct: 1320 GEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRDQDSFEAGIPESFNVLVKEL 1379 Query: 1355 QALGLSIDLEN 1365 ++LGL++DLEN Sbjct: 1380 KSLGLNVDLEN 1390 >gi|330812082|ref|YP_004356544.1| DNA-directed RNA polymerase, beta chain [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380190|gb|AEA71540.1| DNA-directed RNA polymerase, beta chain [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1357 Score = 1694 bits (4387), Expect = 0.0, Method: Composition-based stats. Identities = 721/1365 (52%), Positives = 986/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L FY V+ +G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVQG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDIQD-DKGKVIVEQGRRITARHINQLEKAGIKELQVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ +I +TL Sbjct: 297 VLGRTTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTGNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + K+DI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLNKDDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V D VT+++V+LSA+EE + IAQA++++++ +ELV R E + E + Sbjct: 597 RVVKDALVTDEIVFLSAIEEADHVIAQASATMNDKKVLVDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKT 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G A G G KK ++ +++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGHKAEGG-AGLKKGQEITDEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI +I + + ++ LR FL ++ G E++ + D +L +A+ + Sbjct: 1136 LAAKGLGEKINRMIEEQR---KVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 GGVPMATPVFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|304391373|ref|ZP_07373315.1| DNA-directed RNA polymerase, beta subunit [Ahrensia sp. R2A130] gi|303295602|gb|EFL89960.1| DNA-directed RNA polymerase, beta subunit [Ahrensia sp. R2A130] Length = 1405 Score = 1694 bits (4387), Expect = 0.0, Method: Composition-based stats. Identities = 888/1404 (63%), Positives = 1103/1404 (78%), Gaps = 27/1404 (1%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 ++ VFNG RVRK +G E+ ++P+LIEVQ +SYD FLM+ R +EGLQA F S Sbjct: 5 SQTKVFNGRRRVRKVYGNITEVAEMPNLIEVQMSSYDAFLMVAEPEGGRGDEGLQAVFNS 64 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI FSG+A L+FV Y+F+PPK+D ++C RD+TY+ PLK+TLRLIVFD+DE TGAKS Sbjct: 65 VFPIRDFSGSAQLDFVRYDFEPPKYDTEECRQRDMTYSAPLKVTLRLIVFDIDEDTGAKS 124 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +KDIKEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 125 VKDIKEQEVYMGDMPLMTGNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA 184 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 R+IP +G W+DIEFD+KDI++ RIDRRRK+P TS LMALG+ E+IL FY + + Sbjct: 185 SRVIPYRGSWLDIEFDAKDIVYARIDRRRKLPATSVLMALGLTGEDILEHFYNNVKVTFE 244 Query: 242 GDF--WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 GD W PL L G ++D TG+ V E+GKK+T+ + + L EK V+ + + Sbjct: 245 GDKKGWTMPLDVERL-KGTTPIEDIIDAKTGKSVHEAGKKVTARVARDLAEK-VERIRVA 302 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEE-------------------IFHSE 340 + G YVAEDIVN ETGEI++EAGD + + E+ + Sbjct: 303 PSEINGRYVAEDIVNMETGEIFLEAGDELVWELDEKTGEPVANNGKAGTQPTLVDMMELG 362 Query: 341 IRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLF 400 + +L +D VN AY+R+TL DKN R++AL DIYRVMRPG+ T AE+MF LF Sbjct: 363 YTEFDVLDIDHVNIGAYMRSTLAADKNSSRQEALFDIYRVMRPGEPPTLESAEAMFESLF 422 Query: 401 FDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 FD ++YDLS VGRVKMNMRL+LD D VR +RKEDI++++K LV+LR+G+G IDDIDNLG Sbjct: 423 FDRERYDLSAVGRVKMNMRLDLDAEDTVRVLRKEDILSVMKTLVELRDGRGDIDDIDNLG 482 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+++NQYR+GLLRMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SS Sbjct: 483 NRRVRSVGELMENQYRVGLLRMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSS 542 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS ITH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NI Sbjct: 543 QLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNI 602 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL +FAR+N YGFIE+PYRKV DGKVT +VVYLSAMEE +AQAN+ L DG+F Sbjct: 603 GLINSLATFARINKYGFIESPYRKVEDGKVTAEVVYLSAMEEAKYTVAQANAPLGADGTF 662 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 + V R G+ +P +I +D SPKQ+VS+AA+LIPFLENDD+NR LMG NM RQA Sbjct: 663 ENDTVIARRKGDVQRLPVGEITLMDVSPKQLVSVAAALIPFLENDDANRALMGANMMRQA 722 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VPL++AEAPFVGTGMES+VA+ SGAAI AKR G+V+QVDA RIV+R+ E LDP SGVD Sbjct: 723 VPLVRAEAPFVGTGMESIVARDSGAAIGAKRGGVVDQVDATRIVVRATED-LDPGKSGVD 781 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IYRL KFQRSNQ+TC+NQRPLV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+G Sbjct: 782 IYRLQKFQRSNQSTCINQRPLVRVGDILNKGDIIADGPSTDLGDLALGRNVLVAFMPWNG 841 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V +DVFTSIH+EEFEVMARDTKLGPEEITRDIPNVSEE L+N+DE G Sbjct: 842 YNFEDSILLSERIVRDDVFTSIHLEEFEVMARDTKLGPEEITRDIPNVSEEALRNLDEAG 901 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I +GAEV PGDIL GKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+ G GTVV Sbjct: 902 ITYIGAEVGPGDILCGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRMSPGAFGTVV 961 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 +VR+FNRHGI+K+ER++++ERE+IE LA+D+DDEQ ILDRN+YSRL+ +L G++ ++GPK Sbjct: 962 EVRVFNRHGIEKDERAMAIEREEIETLAKDRDDEQAILDRNVYSRLVGMLDGKSGIAGPK 1021 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 G+KK T LS + + YP+SQWW FA+ DEK Q +E+L+ QY+ SK +L+DRF +K+EK+ Sbjct: 1022 GYKKGTALSEEEMDNYPKSQWWMFAIDDEKAQGQIEALRGQYDESKKLLQDRFMDKVEKL 1081 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG+VSRI+P EDMPFL++G DI Sbjct: 1082 QRGDELPPGVMKMVKVFVAIKRKLQPGDKMAGRHGNKGVVSRIMPIEDMPFLENGVHADI 1141 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMNVGQI ETHLGWAC G+G+K+ L+ +Y+ G LR+ +E++ Sbjct: 1142 VLNPLGVPSRMNVGQILETHLGWACAGMGEKVGHLLEEYQKTGKQEALRAEIEQIYPEND 1201 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGL 1240 E + DYDD+SV+R+A+Q KSGV ++TPVFDGA E I ML A LD SGQS LYDG Sbjct: 1202 RNEPVRDYDDESVVRIADQLKSGVRIATPVFDGAHEPDIVDMLEQAGLDGSGQSTLYDGR 1261 Query: 1241 TGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVW 1300 TGE FDRPVT+GYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1262 TGEAFDRPVTMGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1321 Query: 1301 CIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLS 1360 ++AYGAAY LQEMLT+KSDDV GRT+VYESIV G+DTFE+G PESFNVLVKEM++LGLS Sbjct: 1322 ALEAYGAAYTLQEMLTVKSDDVAGRTKVYESIVRGDDTFESGIPESFNVLVKEMRSLGLS 1381 Query: 1361 IDLENSRTKNSAKMEEIPDFNKCE 1384 ++LENS+ EE D+ E Sbjct: 1382 VELENSK---LEIEEEDEDYVMPE 1402 >gi|114771278|ref|ZP_01448698.1| DNA-directed RNA polymerase beta subunit [alpha proteobacterium HTCC2255] gi|114548203|gb|EAU51090.1| DNA-directed RNA polymerase beta subunit [alpha proteobacterium HTCC2255] Length = 1378 Score = 1694 bits (4387), Expect = 0.0, Method: Composition-based stats. Identities = 839/1382 (60%), Positives = 1066/1382 (77%), Gaps = 17/1382 (1%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA+ G+ R+RK++GK E++DIP+LI+VQK+SYD FL EG+ A F+ Sbjct: 1 MAQTHS--GIKRIRKYYGKIREVLDIPNLIQVQKSSYDLFLNSGDQSQPLDGEGINAVFQ 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI F+ A+LE+V Y+ + PK+DV++C+ RD+TY+ PLK+TLRLIVFDVDE TGA+ Sbjct: 59 SVFPIKDFNETAVLEYVKYDLEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAR 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+KDIKEQ ++MGDLPLMT +GTFV+ G +R+VVSQ+HRSPG+ FDHD+G+ SGKLL+ Sbjct: 119 SVKDIKEQDVFMGDLPLMTPNGTFVVNGTERVVVSQMHRSPGVFFDHDRGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 A RIIP +G W+D EFD+KD+++ RIDRRRK+PVT+ L ALG+D E + S +Y + Y Sbjct: 179 ASRIIPYRGSWLDFEFDAKDVVYARIDRRRKLPVTTLLYALGLDQEGVCSAYYDTVDYKF 238 Query: 241 RGDF--WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLG 297 W + G K + ++D TG+ + E+G K+T +K L E+G V + Sbjct: 239 EKKKNAWVTKFFPQ-RVRGTKPTEDIIDAKTGKVIAEAGTKVTPRTVKKLIEEGKVTEIR 297 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPIL 347 + D + G YV++DI+N ETG IY+EAGD + + +L E+ + + +IP L Sbjct: 298 VAFDTIVGRYVSQDIINEETGAIYVEAGDELTLEYDKEGVVNGGTLHELLEAGVTNIPTL 357 Query: 348 YVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYD 407 +D++N YIRNT+ DKN R AL+DIYRVMRPG+ T A ++F+ LFFDS++YD Sbjct: 358 DIDNINVGPYIRNTMSIDKNMGRDTALMDIYRVMRPGEPPTVDAASALFDTLFFDSERYD 417 Query: 408 LSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSV 467 LS VGRVKMNMRL LD D R +RKEDII ++K LV+LR+GKG IDDID+LGNRRVRSV Sbjct: 418 LSAVGRVKMNMRLQLDAEDTQRTLRKEDIIGVVKALVELRDGKGDIDDIDHLGNRRVRSV 477 Query: 468 GEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEE 527 GE+++NQYR+GLLRMER+IKER+SSV+ID++MPQDLINAKP +AV EFF SSQLSQ + Sbjct: 478 GELMENQYRVGLLRMERAIKERMSSVEIDNIMPQDLINAKPAAAAVREFFGSSQLSQFMD 537 Query: 528 HVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL Sbjct: 538 QTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLA 597 Query: 588 SFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 SFARVN YGFIETPYR+V DGKVT++V Y+SA EE +AQAN+ LD+ G F +LV Sbjct: 598 SFARVNKYGFIETPYRRVDDGKVTDEVQYMSATEEMRYTVAQANAKLDDGGKFANDLVST 657 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R AGE +L E ID+ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLLKA+ Sbjct: 658 RQAGEYMLNTPENIDYIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLKAD 717 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 AP+VGTG+E VVA+ SGAAI A R GI++QVDA RIV+R + +D GVDIYRL KF Sbjct: 718 APYVGTGIEEVVARDSGAAITAARGGIIDQVDATRIVVRVTD-AMDAGDPGVDIYRLRKF 776 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 QRSNQNTC+NQRPLVKVGD V +++ADGPSTD+G+LALG+N+LVAFMPW+GYN+EDS+ Sbjct: 777 QRSNQNTCINQRPLVKVGDRVSMGEVVADGPSTDIGELALGKNVLVAFMPWNGYNYEDSI 836 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 LISER+V +DVFTS+HIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAE Sbjct: 837 LISERIVKDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAE 896 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V P DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G GTVV+VR+FNR Sbjct: 897 VGPSDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDYGTVVEVRVFNR 956 Query: 948 HGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV 1007 HGI+K+ER++ +ERE++E LARD+DDE ILDRN Y+RL ++ G+ A+ GPKG K ++ Sbjct: 957 HGIEKDERALQIEREEVERLARDRDDEVGILDRNTYARLKSMIAGKKAIKGPKGVKSGSL 1016 Query: 1008 LSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMP 1067 + DL+ + QWWQ A++DE N+ESL QY+ K L+ RF++K+EK++ GDD+P Sbjct: 1017 IDDDLLESLSKGQWWQLALEDEADVANMESLNKQYDLQKGALDARFEDKVEKVRRGDDLP 1076 Query: 1068 PGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV 1127 PGV+++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD LNPLGV Sbjct: 1077 PGVMKMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPQEDMPFLADGTPVDFCLNPLGV 1136 Query: 1128 PSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISD 1187 PSRMNVGQI ETH+GWA LGK I + +Y+ +GD+SP++ ++ G + E + D Sbjct: 1137 PSRMNVGQILETHMGWAARNLGKSIDLSLQEYRRSGDMSPVQDAMKIAYGDELYDEVLKD 1196 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 D+ L A GVP++TPVFDGA E +N ML A LD SGQSIL+DG TGE F+R Sbjct: 1197 MPKDNFLEAAGNVTKGVPIATPVFDGAKEADVNDMLTRAGLDTSGQSILFDGRTGEQFNR 1256 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 PVTVG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1257 PVTVGMKYILKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1316 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 AY LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVL+KE+++LGL+I L ++ Sbjct: 1317 AYTLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGIPESFNVLIKEIRSLGLNIQLLDAE 1376 Query: 1368 TK 1369 ++ Sbjct: 1377 SE 1378 >gi|229592910|ref|YP_002875029.1| DNA-directed RNA polymerase subunit beta [Pseudomonas fluorescens SBW25] gi|259494189|sp|C3K2Y3|RPOB_PSEFS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|229364776|emb|CAY52777.1| DNA-directed RNA polymerase beta chain [Pseudomonas fluorescens SBW25] Length = 1357 Score = 1694 bits (4387), Expect = 0.0, Method: Composition-based stats. Identities = 720/1365 (52%), Positives = 989/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+S + Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKD 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A+ L G + D G+ ++E+G+++T+ + +++ G+K L + D Sbjct: 239 ETLSLELIASRL-RGEIAVLDIQDEK-GKVIVEAGRRITARHINQIEKAGIKSLDVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ +I +TL Sbjct: 297 VLGRTTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V D VT+++V+LSA+EE + IAQA++++++ +ELV R E + E + Sbjct: 597 RVVKDALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 RKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKT 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G A G G KK ++ +++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGHKAEGG-AGLKKGQDITDEILDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI +I + + ++ LR FL ++ G E++ + D +L +A+ + Sbjct: 1136 LAAKGLGEKINRMIEEQR---KVADLRKFLHEIYNEIGGRKEELDTFSDQEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 GGVPMATPVFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|312963374|ref|ZP_07777857.1| DNA-directed RNA polymerase subunit beta [Pseudomonas fluorescens WH6] gi|311282454|gb|EFQ61052.1| DNA-directed RNA polymerase subunit beta [Pseudomonas fluorescens WH6] Length = 1357 Score = 1694 bits (4386), Expect = 0.0, Method: Composition-based stats. Identities = 719/1365 (52%), Positives = 989/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+S + Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKD 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A+ L G + D + G+ ++E+G+++T+ + +++ G+K L + D Sbjct: 239 ETLKLELIASRL-RGEIAVLDIQD-ENGKVIVEAGRRITARHINQIEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V D VT+++V+LSA+EE + IAQA++++++ +ELV R E + E + Sbjct: 597 RVVKDALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKT 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G A G G KK ++ +++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGHKAEGG-AGLKKGQDITDEILDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI +I + + ++ LR FL ++ G E++ + D +L +A+ + Sbjct: 1136 LAAKGLGEKINRMIEEQR---KVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 GGVPMATPVFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|77461307|ref|YP_350814.1| DNA-directed RNA polymerase subunit beta [Pseudomonas fluorescens Pf0-1] gi|88909632|sp|Q3K5Y1|RPOB_PSEPF RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|77385310|gb|ABA76823.1| DNA-directed RNA polymerase subunit beta [Pseudomonas fluorescens Pf0-1] Length = 1357 Score = 1694 bits (4386), Expect = 0.0, Method: Composition-based stats. Identities = 721/1365 (52%), Positives = 985/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L FY V+ +G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVKG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 EGLSLELVPQRL-RGEVAVLDIQD-DKGKVIVEQGRRITARHINQLEKAGIKELDVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E + + L +I + + I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKAIVHPATGEILAECNTELSTEILAKIAKAGVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT+D+V+LSA+EE + IAQA+++++E +ELV R E + E + Sbjct: 597 RVVKEGVVTDDIVFLSAIEEADHVIAQASATMNEQKVLIDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G A G G KK ++ +++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGHKAEGG-AGLKKGQDITDEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR+FL+++ G E + + D +L +A+ + Sbjct: 1136 LAAKGLGEKINRMVEEQR---KVAELRTFLDEIYNQIGGRNEDLDSFSDQEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ L DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 GGVPMATPVFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|329114222|ref|ZP_08242984.1| DNA-directed RNA polymerase subunit beta [Acetobacter pomorum DM001] gi|326696298|gb|EGE47977.1| DNA-directed RNA polymerase subunit beta [Acetobacter pomorum DM001] Length = 1397 Score = 1693 bits (4384), Expect = 0.0, Method: Composition-based stats. Identities = 825/1390 (59%), Positives = 1061/1390 (76%), Gaps = 31/1390 (2%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 A F G R+RK FG+ PEI +P+LI+VQ+ASY+ FL N++PD R GLQ F+S Sbjct: 10 AITKSFTGRKRIRKSFGRIPEIAPMPNLIDVQRASYETFLQANVSPDARTPTGLQEVFRS 69 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI F+G LEFVSYEF+ PK+DV++C+ R LTYA PLK+ LRLIV+DVDE TG++S Sbjct: 70 VFPINDFAGRGRLEFVSYEFEEPKYDVEECIQRGLTYAAPLKVILRLIVWDVDEDTGSRS 129 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 I+DIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 130 IRDIKEQPVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFA 189 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL-------------------- 221 R+IP +G W+D EFD+KD+++VRIDR+RK+PVT+ L AL Sbjct: 190 ARVIPYRGSWLDFEFDAKDLLYVRIDRKRKLPVTTLLYALEGAASEAARKAKAAEGGDVD 249 Query: 222 -----GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIES 276 GMD+ EILS FY + + + W P A D G K+ + LVD +TGE V E+ Sbjct: 250 SMEIKGMDANEILSYFYNAVTFIKTAKGWARPFDA-DSFRGLKLLAPLVDAETGEVVAEA 308 Query: 277 GKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEI 336 KLT+ +++ + EK + + + L G Y+A DIVN +TGEIY EAG+ I E L + Sbjct: 309 ETKLTARMVRKIAEK-TREVLVGEIDLLGRYIAHDIVNMQTGEIYGEAGEEITEARLAAL 367 Query: 337 FHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMF 396 + I ++P+L +D+ N +IR+TL DKN R +AL+DIYRVMRPG+ T AE+M Sbjct: 368 EEAGITELPLLAIDAAN-GPWIRDTLTVDKNSTRDEALIDIYRVMRPGEPPTAETAEAML 426 Query: 397 NFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 N LFFD D+YDLS VGRVKMNMRL++D PD VR +RKEDI+ IK L DL++G+G IDDI Sbjct: 427 NGLFFDPDRYDLSAVGRVKMNMRLDMDVPDTVRVLRKEDILRTIKTLCDLKDGRGQIDDI 486 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEF 516 DNLGNRRVRSVGE+++NQYR+GLLRMER+I+ER+ SVDID+VMP DLINAKP +AV EF Sbjct: 487 DNLGNRRVRSVGELMENQYRIGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREF 546 Query: 517 FCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSE 576 F SSQLSQ + N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET E Sbjct: 547 FGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPE 606 Query: 577 GHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDE 636 G NIGL++SL ++A+VN YGFIETPYR V DG + + YLSAMEEE +AQA++ +++ Sbjct: 607 GPNIGLINSLATYAKVNKYGFIETPYRLVKDGVLQDGWKYLSAMEEEKLVVAQADAKVND 666 Query: 637 DGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNM 696 G+ T +L+ R G+ LVP ++ D SPKQ+VS+AA+LIPFLENDD+NR LMG NM Sbjct: 667 QGALTSDLISVRRNGDFRLVPPTEVTACDVSPKQLVSVAAALIPFLENDDANRALMGSNM 726 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPST 756 QRQAVPL++++AP VGTGME+ VA+ SGA IVAKR GIV+Q+D RIV+R+ + ST Sbjct: 727 QRQAVPLVRSDAPLVGTGMEAAVARDSGATIVAKREGIVDQIDGARIVVRAT--NAAGST 784 Query: 757 SGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 GVDIYRL K+ RSNQ+TC+NQRPLV VGD VR DIIADGPST+LG+LALGRN+LVAFM Sbjct: 785 QGVDIYRLRKYSRSNQSTCINQRPLVHVGDNVRAGDIIADGPSTELGELALGRNVLVAFM 844 Query: 817 PWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNI 876 PW+GYNFEDS+LISER+ +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE L+N+ Sbjct: 845 PWNGYNFEDSILISERIAKDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNL 904 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 DE GI+ VGAEVNPGDIL+GK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G S Sbjct: 905 DEAGIVYVGAEVNPGDILIGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGTS 964 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 GT+VDVR+F+R G+DK+ER++++ER +IE LA+D+DDE+ I +R+ YSRL E L GQ A Sbjct: 965 GTIVDVRVFSRRGVDKDERAMAIERAEIERLAKDRDDERAIQERSFYSRLREKLLGQVAG 1024 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 +G KG + T ++ ++ E+PR+ W Q V + V +E+L+ +++ + + ++ RF++K Sbjct: 1025 AGFKGIRSGTEITDAVLDEHPRATWRQIVVASDSVMAELETLRREFDAAIARIQARFESK 1084 Query: 1057 IEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGT 1116 +EK+Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG+VSR++P EDMPFL+DGT Sbjct: 1085 VEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDGT 1144 Query: 1117 PVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY-KANGDISPLRSFLEKV 1175 VD+VLNPLGVPSRMNVGQI ETHLGWAC +G+ I ++++Y + L L+ V Sbjct: 1145 AVDLVLNPLGVPSRMNVGQILETHLGWACAKIGRGIGDMVDEYQRNGEKRQELLDRLKDV 1204 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 G ++E I++ +D ++ +A + GVP++TPVFDGA I +ML A +++SGQS Sbjct: 1205 YGDKVYSEDIANMSNDELIELANNLRKGVPIATPVFDGASIPDIEAMLEKAGVNKSGQSQ 1264 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 L DG TGEPF+R TVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1265 LIDGRTGEPFERKTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG 1324 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYESIV D FE G PESFNVL+KE++ Sbjct: 1325 EMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYESIVREQDDFEAGIPESFNVLIKELK 1384 Query: 1356 ALGLSIDLEN 1365 +LGL+++LE Sbjct: 1385 SLGLNVELEQ 1394 >gi|26987188|ref|NP_742613.1| DNA-directed RNA polymerase subunit beta [Pseudomonas putida KT2440] gi|148545732|ref|YP_001265834.1| DNA-directed RNA polymerase subunit beta [Pseudomonas putida F1] gi|41017719|sp|Q88QP2|RPOB_PSEPK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166229299|sp|A5VXP0|RPOB_PSEP1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|24981825|gb|AAN66077.1|AE016237_1 DNA-directed RNA polymerase, beta subunit [Pseudomonas putida KT2440] gi|148509790|gb|ABQ76650.1| DNA-directed RNA polymerase, beta subunit [Pseudomonas putida F1] gi|313496812|gb|ADR58178.1| RpoB [Pseudomonas putida BIRD-1] Length = 1357 Score = 1693 bits (4384), Expect = 0.0, Method: Composition-based stats. Identities = 722/1365 (52%), Positives = 990/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL + D + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L+TFY V+ G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D +TG+ ++E G+++T+ + L++ GVK L + + Sbjct: 239 EKLSLELVPQRL-RGEVAVMDIHD-ETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E + + L ++ +++ I LY + ++ +I +TL Sbjct: 297 VLGRTTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDTTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ ++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G V++D+V+LSA+EE + IAQA++++++ +ELV R E + E + Sbjct: 597 RVVKEGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD+V+R DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDKVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++++E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKM 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L GQ G G KK TV++ +++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALNGQVVDGG-AGLKKGTVITDEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + + LR FL +V G E + ++ D+ +L +A K Sbjct: 1136 LAAKGLGEKIDRMLEEQR---KAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLK 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ +L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 KGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|292492414|ref|YP_003527853.1| DNA-directed RNA polymerase subunit beta [Nitrosococcus halophilus Nc4] gi|291581009|gb|ADE15466.1| DNA-directed RNA polymerase, beta subunit [Nitrosococcus halophilus Nc4] Length = 1361 Score = 1693 bits (4384), Expect = 0.0, Method: Composition-based stats. Identities = 720/1364 (52%), Positives = 992/1364 (72%), Gaps = 3/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 R+RK FGK I+ P L+ Q S+ +FL M+ P++R ++GL AAF+SV Sbjct: 1 MPYSLTEKKRIRKDFGKLYSILKTPFLLATQIDSFRNFLQMDAPPNKREDKGLHAAFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++ A L++VSY P FDV +C R LTYA PL++ LRL+++D + + + Sbjct: 61 FPIKSYTEYAELQYVSYHLGTPSFDVKECQVRGLTYAAPLRVKLRLVIYDKEAPASEQVV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD+KEQ +YMG++PLMT G FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 KDVKEQEVYMGEIPLMTPKGNFVINGTERVIVSQLHRSPGVIFEHDKGKTHSSGKLLFSA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+ T L ALG +EEIL F+ I +G Sbjct: 181 RIIPYRGSWLDFEFDPKDCVYARIDRRRKLLATILLRALGYSTEEILMMFFETITVHHQG 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + +++ D GE ++E+ +++T+ +K +++ G++ L + Sbjct: 241 SAYLLDLLPQRL-RGESLPFDIINPD-GEVIVEAERRVTARHIKQMEKAGMETLSAPKEF 298 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+V+ +TGE+ A D I + +E I ++I+ ++Y + ++ +I +TL Sbjct: 299 LIGKTLARDLVDTDTGEVLARANDEITAELMEAIEGADIQAFDLIYTNDLDRGPFISDTL 358 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +A ++IYRVMRPG+ T A+++F LFF+ ++YDLS VGR+K N RL Sbjct: 359 RLDLTTTPLEAQMEIYRVMRPGEPPTKEAAQNLFQNLFFNPERYDLSPVGRMKFNRRLGK 418 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + KEDI+ +IK L+D+RNG G++DD+D+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 419 EDITGLGVLSKEDIVDVIKTLIDIRNGYGSVDDVDHLGNRRVRSVGEMAENQFRVGLVRV 478 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + + +MPQ+LINAKPV +A+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 479 ERAVRERLSLAESEGLMPQELINAKPVSAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 538 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGFIETPY Sbjct: 539 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNQYGFIETPY 598 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV + KVT +V YLSA+EE IAQAN++ DE+G + LV CR E L+P EK+ Sbjct: 599 RKVVESKVTGEVEYLSAIEEGQYVIAQANATADEEGRLVDMLVSCRHKNEFTLLPPEKVQ 658 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +ID SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+AE P VGTG+E VVA+ Sbjct: 659 YIDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAETPLVGTGIEKVVARD 718 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R GIV+ VDA R+V+R + + GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 719 SGVMVVARRGGIVDSVDAARVVVRVNDEETAADEPGVDIYNLTKYARSNQNTCINQRPLV 778 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K G+ V D++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V E+ FTSI Sbjct: 779 KPGEVVVAGDVLADGPSTDMGELALGQNLLVAFMPWNGYNFEDSILISERVVEEERFTSI 838 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE ARDTKLGPEEI+ DIPNVSE L +DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 839 HIEELSCFARDTKLGPEEISSDIPNVSEAALSKLDEAGIVYIGAEVKPGDILVGKVTPKG 898 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R G++K+ R++ +E Sbjct: 899 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMHGTVIDVQVFTRDGVEKDSRALQIEEM 958 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ + +D DE I++ +IY RL ++L G+ A GP G + ++ + +++ + +W+ Sbjct: 959 ELAKIKKDLRDEFRIVEADIYQRLEKVLVGKIAEGGPAGLGAGSKITKNYLADLSKDRWF 1018 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++ E+ + +E Q + ++ ++++F+ + K+ G D+PPGV ++VKV++A+KR Sbjct: 1019 EIRLRSEEADKQLEWAAGQLKEQRAAMDEKFQQQRAKLTSGHDLPPGVQKMVKVYLAVKR 1078 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++S I+P EDMP+++DGTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1079 RVQPGDKMAGRHGNKGVISTIVPLEDMPYMEDGTPVDIVLNPLGVPSRMNIGQILETHLG 1138 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG+KI +L+ D + + LR+FLE+V T E++S + VL +A ++ Sbjct: 1139 WAAKGLGRKIGALL-DSSSEQQVVELRAFLEQVYNTSGKKEELSSLSNGEVLELANNLRN 1197 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E+ I +ML +ADL +GQ+ LYDG TGE F RPVTVGY++MLKLNH+ Sbjct: 1198 GVPMATPVFDGASEKEIKAMLELADLPTNGQTALYDGRTGEAFARPVTVGYMHMLKLNHL 1257 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 + DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW +++YGAAY LQEMLT+KSDDV Sbjct: 1258 IDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALESYGAAYTLQEMLTVKSDDV 1317 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL KE++ALG+ I+LE Sbjct: 1318 NGRTKMYKNIVDGDYRMEAGMPESFNVLTKEIRALGIDIELEQD 1361 >gi|258542021|ref|YP_003187454.1| DNA-directed RNA polymerase subunit beta [Acetobacter pasteurianus IFO 3283-01] gi|256633099|dbj|BAH99074.1| DNA-directed RNA polymerase beta subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636156|dbj|BAI02125.1| DNA-directed RNA polymerase beta subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639211|dbj|BAI05173.1| DNA-directed RNA polymerase beta subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642265|dbj|BAI08220.1| DNA-directed RNA polymerase beta subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645320|dbj|BAI11268.1| DNA-directed RNA polymerase beta subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648375|dbj|BAI14316.1| DNA-directed RNA polymerase beta subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651428|dbj|BAI17362.1| DNA-directed RNA polymerase beta subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654419|dbj|BAI20346.1| DNA-directed RNA polymerase beta subunit [Acetobacter pasteurianus IFO 3283-12] Length = 1397 Score = 1692 bits (4383), Expect = 0.0, Method: Composition-based stats. Identities = 825/1390 (59%), Positives = 1061/1390 (76%), Gaps = 31/1390 (2%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 A F G R+RK FG+ PEI +P+LI+VQ+ASY+ FL N++PD R GLQ F+S Sbjct: 10 AITKSFTGRKRIRKSFGRIPEIAPMPNLIDVQRASYETFLQANVSPDARTPTGLQEVFRS 69 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI F+G LEFVSYEF+ PK+DV++C+ R LTYA PLK+ LRLIV+DVDE TG++S Sbjct: 70 VFPINDFAGRGRLEFVSYEFEEPKYDVEECIQRGLTYAAPLKVILRLIVWDVDEDTGSRS 129 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 I+DIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 130 IRDIKEQPVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFA 189 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL-------------------- 221 R+IP +G W+D EFD+KD+++VRIDR+RK+PVT+ L AL Sbjct: 190 ARVIPYRGSWLDFEFDAKDLLYVRIDRKRKLPVTTLLYALEGAASEAARKAKAAEGGDVD 249 Query: 222 -----GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIES 276 GMD+ EIL+ FY + + + W P A D G K+ + LVD +TGE V E+ Sbjct: 250 SMEIKGMDANEILAYFYNAVTFVKTPKGWARPFDA-DSFRGLKLLAPLVDAETGEVVAEA 308 Query: 277 GKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEI 336 KLT+ +++ + EK + + + L G Y+A DIVN +TGEIY EAG+ I E L + Sbjct: 309 ETKLTARMVRKIAEK-TREVLVGEIDLLGRYIAHDIVNMQTGEIYGEAGEEITEARLAAL 367 Query: 337 FHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMF 396 + I ++P+L +D+ N +IR+TL DKN R +AL+DIYRVMRPG+ T AE+M Sbjct: 368 EEAGITELPLLAIDAAN-GPWIRDTLTVDKNSTRDEALIDIYRVMRPGEPPTAETAEAML 426 Query: 397 NFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 N LFFD D+YDLS VGRVKMNMRL++D PD VR +RKEDI+ IK L DL++G+G IDDI Sbjct: 427 NGLFFDPDRYDLSAVGRVKMNMRLDMDVPDTVRVLRKEDILRTIKTLCDLKDGRGQIDDI 486 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEF 516 DNLGNRRVRSVGE+++NQYR+GLLRMER+I+ER+ SVDID+VMP DLINAKP +AV EF Sbjct: 487 DNLGNRRVRSVGELMENQYRIGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREF 546 Query: 517 FCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSE 576 F SSQLSQ + N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET E Sbjct: 547 FGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPE 606 Query: 577 GHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDE 636 G NIGL++SL ++A+VN YGFIETPYR V DG + + YLSAMEEE +AQA++ +++ Sbjct: 607 GPNIGLINSLATYAKVNKYGFIETPYRLVKDGVLQDGWKYLSAMEEEKLVVAQADAKVND 666 Query: 637 DGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNM 696 G+ T +L+ R G+ LVP ++ D SPKQ+VS+AA+LIPFLENDD+NR LMG NM Sbjct: 667 QGALTSDLISVRRNGDFRLVPPTEVTACDVSPKQLVSVAAALIPFLENDDANRALMGSNM 726 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPST 756 QRQAVPL++++AP VGTGME+ VA+ SGA IVAKR GIV+Q+D RIV+R+ + ST Sbjct: 727 QRQAVPLVRSDAPLVGTGMEAAVARDSGATIVAKRDGIVDQIDGARIVVRAT--NATGST 784 Query: 757 SGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 GVDIYRL K+ RSNQ+TC+NQRPLV VGD VR DIIADGPST+LG+LALGRN+LVAFM Sbjct: 785 QGVDIYRLRKYSRSNQSTCINQRPLVHVGDNVRAGDIIADGPSTELGELALGRNVLVAFM 844 Query: 817 PWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNI 876 PW+GYNFEDS+LISER+ +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE L+N+ Sbjct: 845 PWNGYNFEDSILISERIAKDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNL 904 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 DE GI+ VGAEVNPGDIL+GK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P G S Sbjct: 905 DEAGIVYVGAEVNPGDILIGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGTS 964 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 GT+VDVR+F+R G+DK+ER++++ER +IE LA+D+DDE+ I +R+ YSRL E L GQ A Sbjct: 965 GTIVDVRVFSRRGVDKDERAMAIERAEIERLAKDRDDERAIQERSFYSRLREKLLGQVAG 1024 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 +G KG + T ++ ++ E+PR+ W Q V + V +E+L+ +++ + + ++ RF++K Sbjct: 1025 AGFKGIRSGTEITDAVLDEHPRATWRQIVVASDSVMAELETLRREFDAAIARIQARFESK 1084 Query: 1057 IEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGT 1116 +EK+Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG+VSR++P EDMPFL+DGT Sbjct: 1085 VEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDGT 1144 Query: 1117 PVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY-KANGDISPLRSFLEKV 1175 VD+VLNPLGVPSRMNVGQI ETHLGWAC +G+ I ++++Y + L L+ V Sbjct: 1145 AVDLVLNPLGVPSRMNVGQILETHLGWACAKIGRGIGDMVDEYQRNGEKRQELLDRLKDV 1204 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 G ++E I++ +D ++ +A + GVP++TPVFDGA I +ML A +D+SGQS Sbjct: 1205 YGDKVYSEDIANMSNDELVELANNLRKGVPIATPVFDGASIPDIEAMLEKAGVDKSGQSQ 1264 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 L DG TGEPF+R TVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1265 LIDGRTGEPFERKTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG 1324 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYESIV D FE G PESFNVL+KE++ Sbjct: 1325 EMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYESIVREQDDFEAGIPESFNVLIKELK 1384 Query: 1356 ALGLSIDLEN 1365 +LGL+++LE Sbjct: 1385 SLGLNVELEQ 1394 >gi|161898397|ref|YP_508510.2| DNA-directed RNA polymerase subunit beta [Jannaschia sp. CCS1] gi|158564122|sp|Q28UX7|RPOB_JANSC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1385 Score = 1692 bits (4383), Expect = 0.0, Method: Composition-based stats. Identities = 844/1386 (60%), Positives = 1082/1386 (78%), Gaps = 13/1386 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + G R+RKF+GK E++++P+LIEVQK+SYD FL + EG++ F+SV Sbjct: 1 MPQTYAGQKRIRKFYGKIREVLEMPNLIEVQKSSYDLFLKSGDQLEPMDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ A+LEFV YE + PKFDV++C RDLTYA PLK+TLRLIVFD+DE TGAKS+ Sbjct: 61 FPIKDFNETAILEFVKYELETPKFDVEECQQRDLTYAAPLKVTLRLIVFDIDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+AC Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L ALG+D E I+ +Y + + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFSRIDRRRKLPVTTLLYALGLDQEGIMDAYYDTVTFKMVK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + + G + ++ LVD TGE + E+GKK+T +K ++G ++ L + D Sbjct: 241 NKGWSTKFFPERVRGTRPTTDLVDAKTGEVIAEAGKKVTPRAVKKWIDEGSIENLLVPFD 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G + A+DI+N ETG IY+EAGD + + +L+E+ + I +IP+L +D+ Sbjct: 301 GIVGRFAAKDIINEETGAIYVEAGDELTWELDKAGEVSGGTLKELIDAGITEIPVLDIDN 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 VN Y+RNTL DKN +R+ AL+DIYRVMRPG+ T A ++F+ LFFDS++YDLS V Sbjct: 361 VNVGPYMRNTLAVDKNLNRESALMDIYRVMRPGEPPTVEAASNLFDQLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRL+LD D +R +RKEDII+ IK LV+LR+G+G IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLDLDAEDTMRTLRKEDIISCIKALVELRDGRGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATYAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYR+V D V++DVVY+SA EE +AQAN++LD+DG F ++V R +G Sbjct: 601 VNKYGFIETPYRRVNDAVVSDDVVYMSATEEMRHTVAQANANLDDDGKFVNDMVNTRMSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E L PRE ID ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+A+APFV Sbjct: 661 EYTLNPREAIDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQADAPFV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+ESVVAK SGAAI+AKR G+++QVDA RIVIR+ E L+ +GVDIYRL KFQRSN Sbjct: 721 GTGIESVVAKDSGAAIMAKRGGVIDQVDAQRIVIRATED-LELGDAGVDIYRLRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLVKVGD++ + ++IADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISE Sbjct: 780 QNTCINQRPLVKVGDKIGKGEVIADGPSTDIGELALGKNVIVAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+ +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PG Sbjct: 840 RISRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GT+V+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTIVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE VIL+RNIY+RL ++ G+ AV GPKG K +TV+ D Sbjct: 960 KDERALQIEREEVERLARDRDDELVILERNIYARLRGMIMGKTAVKGPKGVKPNTVIDED 1019 Query: 1012 LISE-YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 L+ R QWWQ A++DEK ++E+L Q++T K L+ RF++K+EK++ GDD+PPGV Sbjct: 1020 LLDGQLSRGQWWQLALEDEKDAAHIEALNQQFDTQKRALDHRFEDKVEKVRRGDDLPPGV 1079 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +++VKVF+A+KR +Q GDKMAGRHGNKG++S+++P EDMPFL DGTPVD VLNPLGVPSR Sbjct: 1080 MKMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFVLNPLGVPSR 1139 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MNVGQI ETH+GWA G+G +I +++Y+ +GD++P+R L+ G + + +D D+ Sbjct: 1140 MNVGQILETHMGWAARGMGLQIDEALDEYRRSGDMTPVRDALKIAYGDDVYDDAFADRDE 1199 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 +S+L A GVP++TPVFDGA E +N L A SGQS L+DG TGE F R VT Sbjct: 1200 ESLLEAAGNVTKGVPIATPVFDGAKEADVNDALIRAGFSTSGQSKLFDGRTGEQFAREVT 1259 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1260 VGVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1319 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQEMLT+KSDDV GRT+VYESIV G D FE G PESFNVLVKE++ LGL+++L ++ Sbjct: 1320 LQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEDDE 1379 Query: 1371 SAKMEE 1376 E Sbjct: 1380 GGIAAE 1385 >gi|170723913|ref|YP_001751601.1| DNA-directed RNA polymerase subunit beta [Pseudomonas putida W619] gi|226699433|sp|B1JDX1|RPOB_PSEPW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|169761916|gb|ACA75232.1| DNA-directed RNA polymerase, beta subunit [Pseudomonas putida W619] Length = 1357 Score = 1692 bits (4383), Expect = 0.0, Method: Composition-based stats. Identities = 722/1365 (52%), Positives = 989/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL + D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L+TFY V+ G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D +TG+ ++E G+++T+ + L++ GV L + + Sbjct: 239 EKLSLELVPQRL-RGEVAVMDIHD-ETGKVIVEQGRRITARHVNQLEKAGVNQLDVPMEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E + + L +I +++ I LY + ++ +I +TL Sbjct: 297 VLGRTTAKAIVHPATGEIIAECNTELTTELLIKIAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDTTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ ++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G V++D+V+LSA+EE + IAQA++++++ +ELV R E + E + Sbjct: 597 RVVKEGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD+V R DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDKVARGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++++E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKM 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L GQ G G KK TV++ +++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALNGQVVDGG-AGLKKGTVITDEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI +I + + + LR FL ++ G E + ++ D+ +L +A K Sbjct: 1136 LAAKGLGEKIDRMIEEQR---KAAELRGFLTEIYNEIGGRQENLEEFTDEEILALAHNLK 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ +L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 KGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|162149180|ref|YP_001603641.1| DNA-directed RNA polymerase subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|161787757|emb|CAP57353.1| DNA-directed RNA polymerase beta chain [Gluconacetobacter diazotrophicus PAl 5] Length = 1390 Score = 1692 bits (4381), Expect = 0.0, Method: Composition-based stats. Identities = 825/1393 (59%), Positives = 1058/1393 (75%), Gaps = 31/1393 (2%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 A F G R+RK FG+ PEI +P+LI+VQ+ASY+ FL MN++PD R GLQ F+S Sbjct: 3 AMTKSFTGRKRIRKSFGRIPEIAPMPNLIDVQRASYEAFLQMNVSPDSRTQTGLQEVFRS 62 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI F+G LEFV+YE + PK+DV++C+ R LT+A PLK+ LRLIV+DVDE TG++S Sbjct: 63 VFPINDFAGRGRLEFVNYELEEPKYDVEECIQRGLTFAAPLKVVLRLIVWDVDEDTGSRS 122 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 I+DIKEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 123 IRDIKEQPVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFA 182 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL-------------------- 221 R+IP +G W+D EFDSKD+I+VRIDR+RK+PVT+ L AL Sbjct: 183 ARVIPYRGSWLDFEFDSKDLIYVRIDRKRKLPVTTLLYALEGASSAAARAAKVAEGGDVD 242 Query: 222 -----GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIES 276 GMD++EIL FY ++V+++ W P A G K+ LVD +GE V E+ Sbjct: 243 ALEIRGMDADEILGYFYNQVVFTKGPKGWARPFDAE-SFRGLKLLEPLVDAQSGEVVAEA 301 Query: 277 GKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEI 336 KLT+ +++ + E K + + L G YVA D+VN ETGEIY EAG+ + E LE + Sbjct: 302 DAKLTARMVRKIAET-TKEVLVGPAGLIGRYVAHDLVNMETGEIYAEAGEELTEARLEAL 360 Query: 337 FHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMF 396 + + +P L VD+ N +IRNTL DKN R+DAL DIYRVMRPG+ T AE+MF Sbjct: 361 EEAGVDQLPTLAVDASN-GPWIRNTLTVDKNTSREDALTDIYRVMRPGEPPTPETAEAMF 419 Query: 397 NFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 + LFFD+D+YDLS VGRVKMNMRL LD PD +R +RKEDI+ +KI+ +L++G+G IDDI Sbjct: 420 SGLFFDADRYDLSAVGRVKMNMRLGLDAPDTIRVLRKEDILRTVKIMCELKDGRGAIDDI 479 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEF 516 DNLGNRRVRSVGE+++NQYR+GLLRMER+I+ER+ SVDID+VMP DLINAKP +AV EF Sbjct: 480 DNLGNRRVRSVGELMENQYRVGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREF 539 Query: 517 FCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSE 576 F SSQLSQ + N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET E Sbjct: 540 FGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPE 599 Query: 577 GHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDE 636 G NIGL++SL ++A+VN YGFIETPYR V +G + + YLSAMEEE +AQA++ D Sbjct: 600 GPNIGLINSLATYAKVNKYGFIETPYRLVREGVLQDGWKYLSAMEEEKLIVAQADAKQDS 659 Query: 637 DGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNM 696 G T+ELV R G+ LV E++ D SPKQ+VS+AA+LIPFLENDD+NR LMG NM Sbjct: 660 HGKLTDELVSVRRGGDFRLVKPEEVTACDVSPKQLVSVAAALIPFLENDDANRALMGSNM 719 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPST 756 QRQAVPL++++AP VGTGME+ VA SGA IVAKR GI++Q+D RIV+R+ + +T Sbjct: 720 QRQAVPLVRSDAPLVGTGMEAAVAHDSGATIVAKRGGIIDQIDGARIVVRATDEAG--AT 777 Query: 757 SGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 GVDIYRL K+ RSNQ+TC+NQRPLV+VGD VR DIIADGPST+LG+LALGRN+LVAFM Sbjct: 778 QGVDIYRLRKYMRSNQSTCINQRPLVRVGDRVRGGDIIADGPSTELGELALGRNVLVAFM 837 Query: 817 PWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNI 876 PW+GYNFEDS+LISER+ +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE L+N+ Sbjct: 838 PWNGYNFEDSILISERIARDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNL 897 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 DE GI+ VGAEVNPGDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSL++P G + Sbjct: 898 DEAGIVYVGAEVNPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGTT 957 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 GT+VDVR+F+R G+DK+ER++++ER +IE LA+D+DDE+ I +R+ Y+RL E L GQ + Sbjct: 958 GTIVDVRVFSRRGVDKDERAMAIERAEIERLAKDRDDERAIQERSFYNRLRERLVGQVSG 1017 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 +G KG + T ++ ++++E+PR W V + V +E L+ +++ + + ++ RF++K Sbjct: 1018 TGFKGLRSGTEITEEVLAEHPRGAWRNITVASDPVMVELEVLRREFDAAVARIQARFESK 1077 Query: 1057 IEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGT 1116 +EK+Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG+VSR++P EDMPFL+DGT Sbjct: 1078 VEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDGT 1137 Query: 1117 PVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY-KANGDISPLRSFLEKV 1175 PVD+VLNPLGVPSRMNVGQI ETHLGWAC +G+ I L++DY + L L+ V Sbjct: 1138 PVDLVLNPLGVPSRMNVGQILETHLGWACANIGRGIGELVDDYQRTGEKKQELLGRLKTV 1197 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 G + + I D +D ++ +A + GVP++TPVFDGA I +ML A +++SGQS Sbjct: 1198 YGDQVYDDAIVDLPNDQLVELANNLRKGVPIATPVFDGASIPDIEAMLESAGVNKSGQSQ 1257 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 L DG TGEPF+R TVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1258 LIDGRTGEPFERRTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG 1317 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV D FE G PESFNVL+KE++ Sbjct: 1318 EMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVREQDDFEAGIPESFNVLIKELK 1377 Query: 1356 ALGLSIDLENSRT 1368 +LGL++DLE S Sbjct: 1378 SLGLNVDLEQSND 1390 >gi|167031493|ref|YP_001666724.1| DNA-directed RNA polymerase subunit beta [Pseudomonas putida GB-1] gi|189043863|sp|B0KK60|RPOB_PSEPG RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166857981|gb|ABY96388.1| DNA-directed RNA polymerase, beta subunit [Pseudomonas putida GB-1] Length = 1357 Score = 1692 bits (4381), Expect = 0.0, Method: Composition-based stats. Identities = 723/1365 (52%), Positives = 991/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL + D + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L+TFY V+ G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D +TG+ ++E G+++T+ + L++ GVK L + + Sbjct: 239 EKLSLELVPQRL-RGEVAVMDIHD-ETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E + + L ++ +++ I LY + ++ +I +TL Sbjct: 297 VLGRTTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDTTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ ++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G V++D+V+LSA+EE + IAQA+++++E +ELV R E + E + Sbjct: 597 RVVKEGVVSDDIVFLSAIEEADHVIAQASAAMNEKKQLIDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD+V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDKVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++++E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKM 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L GQ G G KK TV++ +++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALNGQVVDGG-AGLKKGTVITDEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + + LR FL +V G E + ++ D+ +L +A K Sbjct: 1136 LAAKGLGEKIDRMLEEQR---KAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLK 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ +L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 KGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|237797425|ref|ZP_04585886.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020275|gb|EGI00332.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] Length = 1357 Score = 1692 bits (4381), Expect = 0.0, Method: Composition-based stats. Identities = 720/1365 (52%), Positives = 989/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILGKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT ++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLNEIYNEIGGRQETLEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|330869438|gb|EGH04147.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 1357 Score = 1691 bits (4380), Expect = 0.0, Method: Composition-based stats. Identities = 719/1365 (52%), Positives = 988/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT ++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQVQLFDGRTGNKFERAVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|90020571|ref|YP_526398.1| DNA-directed RNA polymerase subunit beta [Saccharophagus degradans 2-40] gi|123396502|sp|Q21M93|RPOB_SACD2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|89950171|gb|ABD80186.1| DNA-directed RNA polymerase, beta subunit [Saccharophagus degradans 2-40] Length = 1361 Score = 1691 bits (4380), Expect = 0.0, Method: Composition-based stats. Identities = 712/1365 (52%), Positives = 985/1365 (72%), Gaps = 4/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++++P L+ +Q SY F + D+R + GL AAFKS+ Sbjct: 1 MAYSYTEKKRIRKDFGKLPDVMEVPYLLAIQLDSYRKFTQADTPFDQRKDMGLHAAFKSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+VSY P FDV +C+ R TYAVPL++ +RLI++D D + +K+I Sbjct: 61 FPIVSYSGNAALEYVSYALGKPVFDVKECVLRGATYAVPLRVKVRLIIYDKD--SSSKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFV+ G +R++VSQLHRSPG+ F+HDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTDNGTFVVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ VRIDRRRK+P + L ALG +E++L FY + Sbjct: 179 RVIPYRGSWLDFEFDPKDLVFVRIDRRRKLPASILLRALGYTTEQMLDMFYETSKFGLTE 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 C + G + + D D G ++E G+++T+ ++ L++ GV L + + Sbjct: 239 TGECVLELVPSRLRGDVTTFEIKDKD-GNLIVEDGRRITARHIRQLEKAGVTELSVPHEY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A+DI+N E+GE+ E I ++ L E+ S +++ LY + ++ +I +TL Sbjct: 298 MVGRALAKDIINAESGEVLFECNTEITDEVLAELVKSGVKEFETLYTNELDCGPFISDTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 +D + + +AL++IYR+MRPG+ T AE++F LFF S++YDLS VGR+K N RL Sbjct: 358 RSDPARTQLEALVEIYRMMRPGEPPTKESAETLFQNLFFSSERYDLSAVGRMKFNRRLGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D+ + EDI+ ++K L+D+RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 418 DSEVGSGTLSNEDIVDVLKTLIDIRNGKGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 478 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N+YGF+E+P+ Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNSYGFLESPH 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+++ YLSA+ E IAQA+++ +E+G TEELV R E L ++ Sbjct: 598 RKVVDGKVTDEIEYLSAINEAKFVIAQASAAQNENGELTEELVSVRFQNEFTLKGPSEVQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTGME VA Sbjct: 658 YMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKAQKPLVGTGMERNVAAD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G++E+VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQR +V Sbjct: 718 SGVCVVAKRGGVIERVDAARIVVRVADDEVEAGEAGVDIYNLTKYTRSNQNTCINQRSIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + G++V R DI+ADGPS DLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 778 RTGEKVSRGDILADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 838 HIQELTCIARDTKLGSEEITADIPNVGEGALSKLDESGIVYVGAEVASGDILVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPS V GTV+DV++F R G++K++RS +E+ Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSSVKGTVIDVQVFTRDGLEKDQRSRDIEKA 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I+ + RL L G A++G KG K ++ +++ E W+ Sbjct: 958 QLDQIRKDLNEEYRIVQGATFERLRAALVGNTAMTG-KGVVKGQPVTDEMLDELSHDDWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + D+ + +++ +V + L+DRF++K K++ GDD+ PGVL++VKV++A+KR Sbjct: 1017 KIRMNDDVLNEQIDAAEVALAERRKELDDRFEDKKGKLETGDDLAPGVLKIVKVYLAIKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ ++G P+DIVLNPLGVPSRMNVGQ+ E HLG Sbjct: 1077 RIQPGDKMAGRHGNKGVISVIMPVEDMPYDENGNPIDIVLNPLGVPSRMNVGQVLEMHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG+KI ++ KA +I + IG E++ + DD ++ +A + Sbjct: 1137 LAAKSLGEKIDEMLKQQKAVAEIRQFLDQIYNQIGESYKAEELDTFSDDEIIELANNLRD 1196 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++T FDGA E+ I +L + + +SGQ L+DG TG+PF RP TVGY+YMLKLNH+ Sbjct: 1197 GVPMATRAFDGAKEKEIKQLLTLGGMPDSGQMTLFDGRTGDPFQRPTTVGYMYMLKLNHL 1256 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1257 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1316 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 GRT++Y++IV G+ E G PESFNVLVKE+++LG++I+LE Sbjct: 1317 AGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGINIELEQDN 1361 >gi|325271158|ref|ZP_08137714.1| DNA-directed RNA polymerase subunit beta [Pseudomonas sp. TJI-51] gi|324103710|gb|EGC01001.1| DNA-directed RNA polymerase subunit beta [Pseudomonas sp. TJI-51] Length = 1357 Score = 1691 bits (4380), Expect = 0.0, Method: Composition-based stats. Identities = 722/1365 (52%), Positives = 990/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL + D + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDNFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L+TFY V+ G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D +TG+ ++E G+++T+ + +++ GVK L + + Sbjct: 239 EKLSLELVPQRL-RGEVAVMDIHD-ETGKVIVEQGRRITARHINQIEKAGVKQLDVPMEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E + + L ++ +++ I LY + ++ +I +TL Sbjct: 297 VLGRTTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDTTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ ++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G V++D+V+LSA+EE + IAQA++++++ +ELV R E + E + Sbjct: 597 RVVKEGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD+V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDKVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++++E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKM 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L GQ G G KK TV+S +++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALNGQVVDGG-AGLKKGTVISDEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + + LR FL +V G E + ++ D +L +A K Sbjct: 1136 LAAKGLGEKIDRMLEEQR---KAAELRVFLTEVYNEIGGRQENLDEFSDAEILALAHNLK 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ +L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 KGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|209545076|ref|YP_002277305.1| DNA-directed RNA polymerase subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|209532753|gb|ACI52690.1| DNA-directed RNA polymerase, beta subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 1390 Score = 1691 bits (4379), Expect = 0.0, Method: Composition-based stats. Identities = 825/1393 (59%), Positives = 1058/1393 (75%), Gaps = 31/1393 (2%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 A F G R+RK FG+ PEI +P+LI+VQ+ASY+ FL MN++PD R GLQ F+S Sbjct: 3 AMTKSFTGRKRIRKSFGRIPEIAPMPNLIDVQRASYEAFLQMNVSPDSRTQTGLQEVFRS 62 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI F+G LEFV+YE + PK+DV++C+ R LT+A PLK+ LRLIV+DVDE TG++S Sbjct: 63 VFPINDFAGRGRLEFVNYELEEPKYDVEECIQRGLTFAAPLKVVLRLIVWDVDEDTGSRS 122 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 I+DIKEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 123 IRDIKEQPVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFA 182 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL-------------------- 221 R+IP +G W+D EFDSKD+I+VRIDR+RK+PVT+ L AL Sbjct: 183 ARVIPYRGSWLDFEFDSKDLIYVRIDRKRKLPVTTLLYALEGASSAAARAAKVAEGGDVD 242 Query: 222 -----GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIES 276 GMD++EIL FY ++V+++ W P A G K+ LVD +GE V E+ Sbjct: 243 ALEIRGMDADEILGYFYNQVVFTKGPKGWARPFDAE-SFRGLKLLEPLVDAQSGEVVAEA 301 Query: 277 GKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEI 336 KLT+ +++ + E K + + L G YVA D+VN ETGEIY EAG+ + E LE + Sbjct: 302 DAKLTARMVRKIAET-TKEVLVGPAGLIGRYVAHDLVNMETGEIYAEAGEELTEVRLEAL 360 Query: 337 FHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMF 396 + + +P L VD+ N +IRNTL DKN R+DAL DIYRVMRPG+ T AE+MF Sbjct: 361 EEAGVDQLPTLAVDASN-GPWIRNTLTVDKNTSREDALTDIYRVMRPGEPPTPETAEAMF 419 Query: 397 NFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 + LFFD+D+YDLS VGRVKMNMRL LD PD +R +RKEDI+ +KI+ +L++G+G IDDI Sbjct: 420 SGLFFDADRYDLSAVGRVKMNMRLGLDAPDTIRVLRKEDILRTVKIMCELKDGRGAIDDI 479 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEF 516 DNLGNRRVRSVGE+++NQYR+GLLRMER+I+ER+ SVDID+VMP DLINAKP +AV EF Sbjct: 480 DNLGNRRVRSVGELMENQYRVGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREF 539 Query: 517 FCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSE 576 F SSQLSQ + N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET E Sbjct: 540 FGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPE 599 Query: 577 GHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDE 636 G NIGL++SL ++A+VN YGFIETPYR V +G + + YLSAMEEE +AQA++ D Sbjct: 600 GPNIGLINSLATYAKVNKYGFIETPYRLVREGVLQDGWKYLSAMEEEKLIVAQADAKQDS 659 Query: 637 DGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNM 696 G T+ELV R G+ LV E++ D SPKQ+VS+AA+LIPFLENDD+NR LMG NM Sbjct: 660 HGKLTDELVSVRRGGDFRLVKPEEVTACDVSPKQLVSVAAALIPFLENDDANRALMGSNM 719 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPST 756 QRQAVPL++++AP VGTGME+ VA SGA IVAKR GI++Q+D RIV+R+ + +T Sbjct: 720 QRQAVPLVRSDAPLVGTGMEAAVAHDSGATIVAKRGGIIDQIDGARIVVRATDEAG--AT 777 Query: 757 SGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 GVDIYRL K+ RSNQ+TC+NQRPLV+VGD VR DIIADGPST+LG+LALGRN+LVAFM Sbjct: 778 QGVDIYRLRKYMRSNQSTCINQRPLVRVGDRVRGGDIIADGPSTELGELALGRNVLVAFM 837 Query: 817 PWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNI 876 PW+GYNFEDS+LISER+ +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE L+N+ Sbjct: 838 PWNGYNFEDSILISERIARDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNL 897 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 DE GI+ VGAEVNPGDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSL++P G + Sbjct: 898 DEAGIVYVGAEVNPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGTT 957 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 GT+VDVR+F+R G+DK+ER++++ER +IE LA+D+DDE+ I +R+ Y+RL E L GQ + Sbjct: 958 GTIVDVRVFSRRGVDKDERAMAIERAEIERLAKDRDDERAIQERSFYNRLRERLVGQVSG 1017 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 +G KG + T ++ ++++E+PR W V + V +E L+ +++ + + ++ RF++K Sbjct: 1018 TGFKGLRSGTEITEEVLAEHPRGAWRNITVASDPVMVELEVLRREFDAAVARIQARFESK 1077 Query: 1057 IEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGT 1116 +EK+Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG+VSR++P EDMPFL+DGT Sbjct: 1078 VEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDGT 1137 Query: 1117 PVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY-KANGDISPLRSFLEKV 1175 PVD+VLNPLGVPSRMNVGQI ETHLGWAC +G+ I L++DY + L L+ V Sbjct: 1138 PVDLVLNPLGVPSRMNVGQILETHLGWACANIGRGIGELVDDYQRTGEKKQELLGRLKTV 1197 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 G + + I D +D ++ +A + GVP++TPVFDGA I +ML A +++SGQS Sbjct: 1198 YGDQVYDDAIVDLPNDQLVELANNLRKGVPIATPVFDGASIPDIEAMLESAGVNKSGQSQ 1257 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 L DG TGEPF+R TVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1258 LIDGRTGEPFERRTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG 1317 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV D FE G PESFNVL+KE++ Sbjct: 1318 EMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVREQDDFEAGIPESFNVLIKELK 1377 Query: 1356 ALGLSIDLENSRT 1368 +LGL++DLE S Sbjct: 1378 SLGLNVDLEQSND 1390 >gi|301381714|ref|ZP_07230132.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. tomato Max13] gi|302061086|ref|ZP_07252627.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. tomato K40] gi|302130773|ref|ZP_07256763.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 1357 Score = 1691 bits (4379), Expect = 0.0, Method: Composition-based stats. Identities = 720/1365 (52%), Positives = 989/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLNLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILGKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT+++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTDEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + + LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVIELRKFLNEIYNEIGGRQEALEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|294085951|ref|YP_003552711.1| DNA-directed RNA polymerase subunit beta/140 kD subunit [Candidatus Puniceispirillum marinum IMCC1322] gi|292665526|gb|ADE40627.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 1392 Score = 1691 bits (4379), Expect = 0.0, Method: Composition-based stats. Identities = 829/1393 (59%), Positives = 1065/1393 (76%), Gaps = 28/1393 (2%) Query: 1 MAKGVV-FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 MA V + RVR+ FG+ EI +P+LI+VQ++SYD FL M++ +R + GLQ F Sbjct: 1 MASHVSTLDSRKRVRRTFGQLEEITPMPNLIDVQRSSYDTFLQMDVPVPDRIDHGLQETF 60 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 KSVFPI F+G ++LEFVSY+ + PK+DV++C R LT+A PLK+TLRL+V++ DE TGA Sbjct: 61 KSVFPIGDFAGRSILEFVSYDLEKPKYDVEECQQRGLTFASPLKVTLRLVVWEEDEDTGA 120 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 +SI+DIKEQ +YMGDLPLMT +GTF++ G +R++VSQ+HRSPG+ FDHD+G+ SGKLL Sbjct: 121 RSIRDIKEQDVYMGDLPLMTSNGTFIVNGTERVIVSQMHRSPGVFFDHDRGKTHASGKLL 180 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL------------------ 221 +A R+IP +G W+D EFD+KDI++VRIDR+RK+P T+F+MAL Sbjct: 181 FAARVIPYRGSWLDFEFDAKDILNVRIDRKRKLPSTTFMMALPDADSLAYMDACAESGED 240 Query: 222 -------GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVI 274 GM EEIL FY + Y + GD W + L+ L G+++ LVD DT + V Sbjct: 241 VDPTRIVGMSREEILGYFYNAVDYKRDGDGWRYALNPEAL-KGSQLIRDLVDADTKKVVA 299 Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLE 334 ++G K+T LK L E GVK + + + G ++AEDI+N TGE+Y EAG+ I E+ + Sbjct: 300 KAGTKMTPRALKKLVEDGVKDVLVPDTDVLGRFIAEDIINMSTGEVYAEAGEEITEELMA 359 Query: 335 EIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAES 394 + DI IL++D+VN ++RNTL D+N R++AL+DIYRVMRPG+ T + + Sbjct: 360 RFVENGNDDISILFIDNVNYGPHLRNTLAADRNTCREEALVDIYRVMRPGEPPTLESSHA 419 Query: 395 MFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTID 454 +F LFF S++YDLS+VGRVKMN RL LDT D VR +RK+D++AI+K+L L++G+G ID Sbjct: 420 LFQSLFFTSERYDLSSVGRVKMNSRLELDTDDSVRILRKQDVMAILKVLTGLKDGRGDID 479 Query: 455 DIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVC 514 DID+LGNRRVRSVGE+++NQYR+GLLRMER+I+ER+ +V+ID+VMP DLINAKP +AV Sbjct: 480 DIDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMGAVEIDTVMPADLINAKPAAAAVR 539 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 EFF SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGRICP ET Sbjct: 540 EFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIET 599 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSL 634 EG NIGL++SL ++A++N YGFIETPYRKV +GKVT++V Y+SAMEE IAQAN+ L Sbjct: 600 PEGPNIGLINSLATYAQINRYGFIETPYRKVVEGKVTDEVRYISAMEEGRYTIAQANAEL 659 Query: 635 DEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 D G F EL+ R AGE L I+ +D SPKQ+VS+AA+LIPFLENDD+NR LMG Sbjct: 660 DAKGVFVGELIPVRRAGEIGLARPTDIELMDVSPKQLVSVAAALIPFLENDDANRALMGS 719 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDP 754 NMQRQAVPL+KAEAP VGTGME+ VA+ SG IVAKRAG+++QVDA RIV+R+ E + Sbjct: 720 NMQRQAVPLVKAEAPIVGTGMEARVARDSGVTIVAKRAGVIDQVDATRIVVRASEETAED 779 Query: 755 STSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVA 814 S VDIY L+KFQRSNQNT VNQRPLVKVGD VRR DIIADGPST+ G+LALGRN+LVA Sbjct: 780 -VSPVDIYSLLKFQRSNQNTTVNQRPLVKVGDTVRRGDIIADGPSTEDGELALGRNVLVA 838 Query: 815 FMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLK 874 FMPW+GYNFEDS+LISER+V +DVFTSIHIEE+EVMARDTKLG EEITRDIPNV EE LK Sbjct: 839 FMPWNGYNFEDSILISERIVRDDVFTSIHIEEYEVMARDTKLGQEEITRDIPNVGEEALK 898 Query: 875 NIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSG 934 N+DE GI+ VGAEV P DILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSL++P G Sbjct: 899 NLDEAGIVYVGAEVGPSDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPG 958 Query: 935 VSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 SGTVV+VR+F+R G++K+ER+++++R +I+ L +D+DDE+ IL+R Y R+ E+ GQ Sbjct: 959 GSGTVVEVRVFSRRGVEKDERALAIDRAEIDRLGKDRDDERSILERGFYGRMTELFAGQT 1018 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 SGPKG K T + L+ E P+SQW Q AV+D+ VQ+ +E+ +E++ + L+ RF Sbjct: 1019 VASGPKGVKAGTKIDDALLDELPKSQWQQIAVKDDNVQKLIEAQIANFESAVAALQARFN 1078 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 +K++K+Q GD++ PGV+++VKVFVA+KR +Q GDKMAGRHGNKG++SRI+P EDMP+L+D Sbjct: 1079 DKVDKLQGGDELLPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRIVPAEDMPYLED 1138 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDIVLNPLGVPSRMNVGQI ETHLGWA GLGK++ + +AN D S LR L Sbjct: 1139 GTPVDIVLNPLGVPSRMNVGQILETHLGWAARGLGKQVGAAAEAARANADTSKLRDTLSG 1198 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 + + +++ DDD ++ AE GVP+ TPVFDGA E + ++L+ A L E+GQ Sbjct: 1199 MYSAEQYENELAVMDDDQIIEQAEILGRGVPMGTPVFDGAREADVLALLKKAGLSETGQE 1258 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 L DG TGE FDR VTVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1259 WLTDGRTGEVFDRAVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRF 1318 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV G+D FE+G PESFNVLVKE+ Sbjct: 1319 GEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDDFESGIPESFNVLVKEL 1378 Query: 1355 QALGLSIDLENSR 1367 ++LGL++DL + Sbjct: 1379 RSLGLNVDLHEAE 1391 >gi|330879462|gb|EGH13611.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966918|gb|EGH67178.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. actinidiae str. M302091] Length = 1357 Score = 1691 bits (4378), Expect = 0.0, Method: Composition-based stats. Identities = 720/1365 (52%), Positives = 989/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLNLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILGKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT+++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTDEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + + LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVIELRKFLNEIYNEIGGRQETLEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|320322329|gb|EFW78423.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. glycinea str. B076] Length = 1357 Score = 1691 bits (4378), Expect = 0.0, Method: Composition-based stats. Identities = 719/1365 (52%), Positives = 988/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT ++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALLGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|302189270|ref|ZP_07265943.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. syringae 642] gi|330891938|gb|EGH24599.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. mori str. 301020] gi|330899743|gb|EGH31162.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. japonica str. M301072PT] gi|330988289|gb|EGH86392.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1357 Score = 1690 bits (4377), Expect = 0.0, Method: Composition-based stats. Identities = 719/1365 (52%), Positives = 988/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT ++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|254785056|ref|YP_003072484.1| DNA-directed RNA polymerase subunit beta [Teredinibacter turnerae T7901] gi|259494194|sp|C5BQ39|RPOB_TERTT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|237687017|gb|ACR14281.1| DNA-directed RNA polymerase, beta subunit [Teredinibacter turnerae T7901] Length = 1360 Score = 1690 bits (4377), Expect = 0.0, Method: Composition-based stats. Identities = 717/1364 (52%), Positives = 982/1364 (71%), Gaps = 5/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++++P L+ +Q SY F + DER + GLQAAFKSV Sbjct: 1 MAYSYTEKKRIRKDFGKLPNVMEVPYLLAIQLDSYRKFTQADRPADERLDIGLQAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+VSY P FDV +C+ R TYAVPL++ +RLI++D + +K+I Sbjct: 61 FPIVSYSGNAALEYVSYALGKPVFDVSECVLRGATYAVPLRVKVRLIIYDR--ESSSKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ F+HDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD+++VRIDRRRK+P T L ALG +EE+L F+ Sbjct: 179 RVIPYRGSWLDFEFDPKDLVYVRIDRRRKLPATILLRALGYSAEEMLDMFFETSRVFLAE 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L + L G + + D D G ++E G+++T+ ++ L++ V L + ++ Sbjct: 239 DNIKLELVPSRL-RGEVTTFEIKDAD-GNVIVEDGRRITARHIRQLEKSNVTELQVPAEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A ++++ TGE+ E I E+ LE + + + + ILY + ++ ++ +TL Sbjct: 297 VLGKALANNVIDTNTGEVLFECNSEITEEVLEGLRSANVSEFQILYTNDLDCGPFLSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD + +AL++IYR+MRPG+ T AE +F LFF +++YDLS VGR+K N RL Sbjct: 357 RTDPTRTELEALVEIYRMMRPGEPPTKESAEGLFQNLFFSNERYDLSAVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + +EDI+ +++ L+ +RNG+GT+DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 417 DEETGEGTLSREDIVDVLRTLISIRNGQGTVDDIDHLGNRRVRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+P+ Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNNYGFLESPH 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+++ YLSA+ E IAQA+++ D +G T++LV R E L + Sbjct: 597 RKVVDGKVTDEIEYLSAINESQYVIAQASAATDGEGRLTDDLVSVRYQNEFTLKAAADVQ 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTGME VA+ Sbjct: 657 YMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKADKPVVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G +E VDA RIV+R + + +GVDIY L+K+ RSNQNTC+NQRP+V Sbjct: 717 SGVCVVAKRGGKIESVDAGRIVVRVADEETPAGDAGVDIYNLIKYTRSNQNTCINQRPIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD + R DI+ADGPS DLG+LALG+NM +AFM W+GYNFEDS+L+SER+V ED FT+I Sbjct: 777 GPGDSISRGDILADGPSVDLGELALGQNMRIAFMTWNGYNFEDSILVSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCIARDTKLGSEEITADIPNVGEGALAKLDESGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPS V GTV+DV++F R G++K++RS+ +E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSSVKGTVIDVQVFTRDGLEKDQRSLDIEKA 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ ++RL L G A SG KG KK ++ ++++ R W+ Sbjct: 957 QLDQVRKDLNEEYRIVEGATFARLRSSLVGNLASSG-KGVKKGEAVTDEMLNAIDRDDWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + D+ + ++ + Q + L++RF++K K+ GDD+ PGVL++VKV++A+KR Sbjct: 1016 KVRMADDALNEQLDLAEQQLVERRKELDERFEDKKRKLATGDDLAPGVLKIVKVYLAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ ++G P+DIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISVIMPVEDMPYDENGEPIDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG+KI +++ + ++ + IG G E + + D+ +L +A + Sbjct: 1136 LASKGLGRKIDNMVKQQREIAELRKFLGEIYNEIGQGYKIEDLDSFSDEEILELARNLRG 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++T FDGA E I ++L++ADL ESGQ L+DG TG+ F RPVTVGY+YMLKLNH+ Sbjct: 1196 GVPMATRAFDGAAESEIKALLKLADLPESGQMSLFDGRTGDAFMRPVTVGYMYMLKLNHL 1255 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1256 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVLVKE+++LG++I+LE Sbjct: 1316 NGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGINIELEQD 1359 >gi|146281163|ref|YP_001171316.1| DNA-directed RNA polymerase subunit beta [Pseudomonas stutzeri A1501] gi|158514168|sp|A4VHM3|RPOB_PSEU5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|145569368|gb|ABP78474.1| DNA-directed RNA polymerase beta chain [Pseudomonas stutzeri A1501] Length = 1356 Score = 1690 bits (4376), Expect = 0.0, Method: Composition-based stats. Identities = 724/1365 (53%), Positives = 983/1365 (72%), Gaps = 10/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P ++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPHVMDVPYLLAIQLDSYREFLQAGATKDQFRDIGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTF+I G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L AL +EEIL FY V+ +G Sbjct: 179 RIIPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALNYSTEEILDAFYDTNVFHVKG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + D D+G+ ++E G+++T+ + L + G+K L + D Sbjct: 239 ETLALELVPQRL-RGEIATFDIKD-DSGKVIVEQGRRITARHINQLDKSGIKELEMPMDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+ IV+ TGEI E + + +I +++ LY + ++ +I +TL Sbjct: 297 VLGRTVAKAIVHPATGEIIAECNTELTVDVMAKIVKAQVVRFETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDSTTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFAAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +EDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLSREDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG+VT+++V+LSA+EE + IAQA++ L + +ELV R E + E + Sbjct: 597 RVVKDGEVTDEIVFLSAIEEADHVIAQASAKL-DGRKLVDELVAVRHLNEFTVKAPEDVT 655 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+++ P VGTGME VA+ Sbjct: 656 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTGMERNVARD 715 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 716 SGVCVVARRGGVIDSVDASRIVVRVRDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 775 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD V R DI+ADGPSTD+G+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 776 RKGDVVARGDIMADGPSTDMGELALGQNMRVAFMPWNGYNFEDSILLSERVVQEDRFTTI 835 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ VGAEV PGDILVGK+TPKG Sbjct: 836 HIQELTCVSRDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGPGDILVGKVTPKG 895 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++++E+ Sbjct: 896 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFIRDGVERDSRALAIEKM 955 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G A G G KK V++ +++ QW+ Sbjct: 956 QLDEIRKDLNEEFRIVEGATFERLRSALVGATAEGG-AGLKKGVVITDEILDGLEHGQWF 1014 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1015 KLRMAEDALNEQLEKAQAYLSDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKR 1074 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1075 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1134 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + D D VL +A + Sbjct: 1135 LAAKGLGEKINLMLEEQRK---VAELRKFLHEIYNEIGGRQENLDDLSDQEVLDLANNLR 1191 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ L+DG TG F+R TVGY+YMLKLNH Sbjct: 1192 KGVPMATPVFDGAKEREIKAMLKLADLPESGQMQLFDGRTGNAFERTTTVGYMYMLKLNH 1251 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1252 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1311 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1312 VNGRTKMYKNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIDLETE 1356 >gi|329897163|ref|ZP_08271904.1| DNA-directed RNA polymerase beta subunit [gamma proteobacterium IMCC3088] gi|328921380|gb|EGG28773.1| DNA-directed RNA polymerase beta subunit [gamma proteobacterium IMCC3088] Length = 1357 Score = 1689 bits (4375), Expect = 0.0, Method: Composition-based stats. Identities = 732/1365 (53%), Positives = 986/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P ++DIP L+ +Q SY F + D+R + GL AAF+SV Sbjct: 1 MAYSYTEKKRIRKEFGSLPNVMDIPYLLAIQLDSYKKFTQQGVPVDQRGDYGLHAAFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y+ P FDV +C R +TYA L++ +RLI++D D + +K+I Sbjct: 61 FPIASYSGNAALEYVDYQLGVPAFDVAECQLRGVTYACALRVKVRLIIYDKD--SSSKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQDVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L ALG SEEIL F+ + Sbjct: 179 RIIPYRGSWLDFEFDPKDQVFVRIDRRRKLPATVLLRALGYSSEEILDMFFDVNEFRVNN 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + G S + + ++E G+++T+ ++ L++ V L I + Sbjct: 239 ATTLTMALIPERLRGDVASFDIKIGK--KVIVEQGRRITARHIRELEKGEVSELEIPVEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++ V+ +TGE+ +E + +++ + + I LY + ++ ++ +TL Sbjct: 297 LYGRALAKNFVDEKTGEVLVECNTELSADTVKIMLDAGATKIETLYTNDLDCGPFLSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++F LFF D+YDLSTVGR+K N RL Sbjct: 357 RQDATRNELEALVEIYRMMRPGEPPTKESAENLFQNLFFSPDRYDLSTVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + ++DI+ ++K+LV +RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 417 EDVIGSGVLDRDDIVDVLKMLVSIRNGKGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNEYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG+VT+D+ YLSA+ E IAQA++++DE+G FT++LV R E ++P E+ID Sbjct: 597 RRVVDGQVTDDIEYLSAINEAEHVIAQASATVDENGRFTDDLVAVRHMNEFTVMPPERID 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SPKQVVSIAA+LIPFLE+DD+NR LMG NMQRQAVP L ++ P VGTGME VA+ Sbjct: 657 YMDVSPKQVVSIAAALIPFLEHDDANRALMGSNMQRQAVPTLVSDKPLVGTGMERYVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKRAG+V+ VDA RIV+R+ + D + + VDIY L+K+ RSNQNTC+NQR +V Sbjct: 717 SGVCVVAKRAGVVDSVDASRIVVRASAEEADGNEAPVDIYNLVKYTRSNQNTCINQRAIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V R DI+ADGPS D+GDLALG+NM +AFMPW+GYNFEDS+L+SER+V ED FTSI Sbjct: 777 SKGDVVERGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILVSERVVKEDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEI+ DIPNV E L +DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 837 HIQELTCIARDTKLGSEEISADIPNVGESALSKLDESGIVYIGAEVEPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPS GTV+DV++F R G++K+ R+ +E Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSSTKGTVIDVQVFTRDGLEKDSRAREIENH 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + +Y+RL L G+ +SG G K TVLS ++++E R QW+ Sbjct: 957 QLNEFRKDLKEEYRIYEEAVYARLASQLVGKKTLSG-AGLSKGTVLSDEVLAELDREQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D V + S + Q E LE+RF++K K+Q GDD+ PGVL+VVKV++A+KR Sbjct: 1016 KIKTDDADVNALIASAEKQLEEENRQLEERFEDKKRKLQTGDDLAPGVLKVVKVYLAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ +G PVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISVIMPVEDMPYDANGEPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG-SHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++I + + +++ LR FL K+ G +E + DD + +A+ + Sbjct: 1136 MAARGLGEKINTMIEEQR---EVAELREFLHKIYNNGAGRSEDLDSLTDDEIRTLAQNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I ++L +AD+ ESGQ L+DG TG+ F+RPVTVGY+YMLKLNH Sbjct: 1193 KGVPMATPVFDGAAESEIKALLALADMPESGQFTLFDGRTGDQFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LEN Sbjct: 1313 VAGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELEND 1357 >gi|304321431|ref|YP_003855074.1| DNA-directed RNA polymerase subunit beta [Parvularcula bermudensis HTCC2503] gi|303300333|gb|ADM09932.1| DNA-directed RNA polymerase, beta subunit [Parvularcula bermudensis HTCC2503] Length = 1361 Score = 1689 bits (4375), Expect = 0.0, Method: Composition-based stats. Identities = 838/1367 (61%), Positives = 1055/1367 (77%), Gaps = 11/1367 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FG+ + +++P+LI+VQ+ SY+ FL + +R +GL+A FKSV Sbjct: 1 MAQSFVEKKRIRKHFGRIGDAVEMPNLIQVQRESYEAFLQRFVPAMDRRRDGLEAVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+ F+ A L++VSYEF+ PKFDVD+C+ RD+TY+ PLK+ L+L VF+VDE T AKS+ Sbjct: 61 FPISDFTDTARLQYVSYEFEEPKFDVDECMQRDMTYSAPLKVKLQLAVFEVDEDTEAKSL 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG+LPLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQEVYMGELPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDII+VRIDRRRK+P T+ L LG D E+IL FY + + Sbjct: 181 RIIPYRGSWLDFEFDPKDIINVRIDRRRKLPATTLLYGLGYDQEDILDLFYHSVTHDAVE 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G K LVD TGE +E+GKK+T+ +K L+E GVK ++ + Sbjct: 241 GGFSTTFDPEKL-KGTKSERDLVDAATGEVAVEAGKKITARTIKQLEEGGVKRFLLSPEQ 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y+A+D+VN ETGEIY EAGD IDE L E+ I L +D +N YIRNTL Sbjct: 300 MVGRYIAKDLVNRETGEIYAEAGDEIDEDVLAELAERGIDSFETLDIDHINTGGYIRNTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL-N 421 DKN++R AL+DIYRVMRPG+ T AE++F+ LFFD ++YDLS VGRVKMNMRL Sbjct: 360 AADKNRNRDMALIDIYRVMRPGEPPTLETAEALFSGLFFDEERYDLSAVGRVKMNMRLGF 419 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ R +R+EDII ++++L LR+GKG IDDIDNLGNRRVRSVGE+++NQYR+GLLR Sbjct: 420 EDVSDEQRTLRREDIIEVLRVLAGLRDGKGEIDDIDNLGNRRVRSVGELMENQYRIGLLR 479 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 MER+IKER+SSV+ID++MP DLINAKP +AV EFF SSQLSQ + N LS ITH RR+ Sbjct: 480 MERAIKERMSSVEIDNIMPNDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRM 539 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + A+VN YGFIE+P Sbjct: 540 SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHAKVNKYGFIESP 599 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPRE 659 YRKV +G T++VVYLSA+EE IAQAN+ +DEDG E V CR + +LVPRE Sbjct: 600 YRKVENGVPTDEVVYLSAVEESRYNIAQANAEIDEDGRLANEFVNCRAGALRDAMLVPRE 659 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 ++D+ID SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+AEAP+VGTGME VV Sbjct: 660 EVDYIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLQAEAPYVGTGMEKVV 719 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A+ SGAAI A+R+G VEQVDA RIVIR+ E D + GVDIY L KFQRSNQNTC+ QR Sbjct: 720 ARDSGAAIAARRSGFVEQVDAQRIVIRATEE-TDTTKPGVDIYNLRKFQRSNQNTCITQR 778 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 PLVK+GD V DI+ADGPSTDLG+LALG+N+LVAFMPW+GYNFEDS+LISER+V +DVF Sbjct: 779 PLVKIGDIVEAGDIVADGPSTDLGELALGKNVLVAFMPWNGYNFEDSILISERIVRDDVF 838 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIH+EEFE+ ARDTKLGPEEITRDIPNVSEE L+N+DE GI+ +GAEV+PGDILVGKIT Sbjct: 839 TSIHLEEFEIAARDTKLGPEEITRDIPNVSEEALRNLDEAGIVSIGAEVHPGDILVGKIT 898 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGESPMTPEEKLLRAIFGEKA DVRDTSL++P GV+GTVV+VR+FNRHG++K+ER+I++ Sbjct: 899 PKGESPMTPEEKLLRAIFGEKAADVRDTSLKLPPGVAGTVVEVRVFNRHGVEKDERAIAI 958 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ERE+I+ LA+D+DDE IL+RNI+ RL ++L G AVS PKGF K TV + + + E R+ Sbjct: 959 EREEIDRLAKDRDDELAILERNIFGRLEDMLVGAEAVSMPKGFDKGTV-TKEQLKEMGRT 1017 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 WW+ + +E +E L+ QY+ S++ LE RF++K+EK+Q GD++PPGV+++VKVFVA Sbjct: 1018 LWWKIGLANEAAMGEIEGLRKQYDESRARLEARFEDKVEKLQRGDELPPGVMKMVKVFVA 1077 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR +Q GDKMAGRHGNKG++S+I P EDMPFL+DGTPVDIVLNPLGVPSRMNVGQI ET Sbjct: 1078 VKRKLQPGDKMAGRHGNKGVISKIAPMEDMPFLEDGTPVDIVLNPLGVPSRMNVGQILET 1137 Query: 1140 HLGWACVGLGKKI-KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 HLG+AC GLG++I +L + L+ V G D+ + + Sbjct: 1138 HLGFACRGLGRQIGDALEYWERDESKKDEYIQELKTVYGDDQELPT----DEYELKELGR 1193 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 GVP++TPVFDGA E I ML+ A +ESGQ LYDG TG+ F RPVTVGY Y+LK Sbjct: 1194 NLVRGVPIATPVFDGAREAEIIEMLQKAGFNESGQVELYDGRTGDKFARPVTVGYKYLLK 1253 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1254 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1313 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 SDDV GRT+VYE+IV G+D+FE G PESFNVLVKEM++LGL+++L+N Sbjct: 1314 SDDVAGRTKVYEAIVRGDDSFEAGIPESFNVLVKEMRSLGLNVELQN 1360 >gi|288942079|ref|YP_003444319.1| DNA-directed RNA polymerase subunit beta [Allochromatium vinosum DSM 180] gi|288897451|gb|ADC63287.1| DNA-directed RNA polymerase, beta subunit [Allochromatium vinosum DSM 180] Length = 1393 Score = 1689 bits (4375), Expect = 0.0, Method: Composition-based stats. Identities = 737/1399 (52%), Positives = 991/1399 (70%), Gaps = 41/1399 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK P I+D+P L+ Q SY FL +++ +R + GL AAFKSV Sbjct: 1 MAYSFTEKKRIRKDFGKRPSILDVPFLLATQIDSYREFLQADVSVKDRRDLGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A+LE+V Y P FD +C R T+A PL++ LRL+++D + G+K + Sbjct: 61 FPIESYSGNAVLEYVKYRLGDPVFDERECHLRGATFAAPLRVLLRLVIYDKEAPAGSKVV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG+LPLMT+ GTF+I G +R++VSQLHRSPG+ FDHDKG+ SGKLL++ Sbjct: 121 KDVREQEVYMGELPLMTETGTFIINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFSA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG E+IL F+ + +G Sbjct: 181 RVIPYRGSWLDFEFDPKDNVFVRIDRRRKLPATVLLRALGYGVEDILGRFFETDTFRLQG 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G V + D E ++ESG+++T+ ++ L++ GV L + +D Sbjct: 241 QTVTLDLVPERL-RGETVGFDVKIGD--EVLVESGRRVTARHIRELQKAGVDRLEVPADF 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A V+ +TGE++ EA D I + LE +F I + L+V+ ++ YI TL Sbjct: 298 LLGRILAHAQVDSDTGEVFAEANDPITPELLETLFRKGIETLETLFVNDLDQGPYISETL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DA ++IYR+MRPG+ T A+++F+ LFF SD+YDLS VGR+K N RL Sbjct: 358 RIDPTTNDLDAQIEIYRMMRPGEPPTKEAAQNLFHNLFFTSDRYDLSAVGRMKFNRRLGR 417 Query: 423 DTPDDVRHIRKEDIIA-----------------------IIKILVDLRNGKGTIDDIDNL 459 I A +K+LV+LRNG+G +DDID+L Sbjct: 418 ADETGPGVIYDGRYFAGRTDDFSKKLFDQYGEGASDILDSLKVLVELRNGRGMVDDIDHL 477 Query: 460 GNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 GNRR+R VGEM +NQ+R+GL+R+ER++KER+S + + +MPQ+LINAKPV +A+ EFF S Sbjct: 478 GNRRIRCVGEMAENQFRVGLVRVERAVKERLSLAESEGLMPQELINAKPVSAAIKEFFGS 537 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 SQLSQ + N LS +TH RR+SALG GG+AR RAG E+RDVHPTHYGR+CP ET EG N Sbjct: 538 SQLSQFMDQNNPLSEVTHKRRVSALGPGGLARERAGFEVRDVHPTHYGRVCPIETPEGPN 597 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 IGL++SL +AR N+YGF+ETPYRKV DG+VT+ + YLSA+EE N IAQAN++LD DG Sbjct: 598 IGLINSLAVYARTNSYGFLETPYRKVEDGRVTDRIDYLSAIEEGNFVIAQANATLDADGR 657 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQ 699 + LV CR A E + E++ ++D SP+Q+VS+AASLIPFLE+DD+NR LMG NMQRQ Sbjct: 658 LADALVSCRHANEFAMRAPEEVQYMDVSPRQIVSVAASLIPFLEHDDANRALMGSNMQRQ 717 Query: 700 AVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGD--LDPSTS 757 AVP L+AE P VGTGME VVA+ SG +VA+R G++E VDA RIV+R + + P Sbjct: 718 AVPTLRAEKPLVGTGMERVVARDSGVYVVARRGGVIESVDAARIVVRVNDDEAAKTPDVP 777 Query: 758 GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMP 817 GVDIY L K+ RSNQNTC+NQRPLVK+GD + R D++ADGPSTD+G+LALG+N+ VAFMP Sbjct: 778 GVDIYNLTKYTRSNQNTCINQRPLVKLGDAIARGDVLADGPSTDMGELALGQNLRVAFMP 837 Query: 818 WHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNID 877 W+GYNFEDS+LISER+V ED FT+IHIEE +ARDTKLGPEEIT DIPNV E L +D Sbjct: 838 WNGYNFEDSILISERVVQEDRFTTIHIEELSCLARDTKLGPEEITGDIPNVGESALSKLD 897 Query: 878 ECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSG 937 E GI+ VGAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G++G Sbjct: 898 ESGIVYVGAEVRDGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRLPTGMNG 957 Query: 938 TVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 TVVDV++F R G+DK++R+I +E ++E + +D D+Q I++ + + R+ ++L G+ A Sbjct: 958 TVVDVQVFTRDGVDKDKRAIEIEEMELERVRKDFADQQRIMENDTFQRVEKLLVGRVADG 1017 Query: 998 GPKGFKKSTVLSSDLISEY----PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 GP GF+ + ++ D + R W++ V+DE V +E++ Q + + +R+ Sbjct: 1018 GPGGFRPGSEITKDYLDSLKSKGSRDGWFEIRVRDEDVATQLEAVAAQVKQQREEFRERY 1077 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 + K K+ GDD+ PGVL++VKV+VA+KR IQ GDKMAGRHGNKG++S+++P EDMPF Sbjct: 1078 EVKKRKVASGDDLAPGVLKMVKVYVAVKRRIQPGDKMAGRHGNKGVISKVVPVEDMPFSA 1137 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 DG PVDIVLNPLGVPSRMNVGQ+ ETHLGWA GLG+KI ++ + I LR FLE Sbjct: 1138 DGVPVDIVLNPLGVPSRMNVGQVLETHLGWAAQGLGEKIGRML---QRQTAIGELRDFLE 1194 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLD---- 1229 +V T E ++ + DD +L +A GVP++TPVFDGA EE I +ML++AD D Sbjct: 1195 QVYNTSGKQEDLASFSDDEILELARNLTRGVPLATPVFDGATEEEIKAMLKLADRDNTEQ 1254 Query: 1230 --ESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 SGQ+IL+DG +G+ F+RPVTVGY+YM+KLNH+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1255 GVPSGQTILFDGRSGDQFERPVTVGYMYMIKLNHLVDDKMHARSTGPYSLVTQQPLGGKA 1314 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV G+ E G PESF Sbjct: 1315 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEAGMPESF 1374 Query: 1348 NVLVKEMQALGLSIDLENS 1366 NVLVKE+++L ++++L+ Sbjct: 1375 NVLVKEIRSLAINVELQQD 1393 >gi|331012405|gb|EGH92461.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1357 Score = 1689 bits (4374), Expect = 0.0, Method: Composition-based stats. Identities = 719/1365 (52%), Positives = 987/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMGQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT ++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|330953204|gb|EGH53464.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae Cit 7] Length = 1357 Score = 1689 bits (4374), Expect = 0.0, Method: Composition-based stats. Identities = 718/1365 (52%), Positives = 987/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS IT RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITCKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT ++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLNEIYNEIGGRQESLEDLSDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|94497753|ref|ZP_01304320.1| DNA-directed RNA polymerase, beta subunit [Sphingomonas sp. SKA58] gi|94422802|gb|EAT07836.1| DNA-directed RNA polymerase, beta subunit [Sphingomonas sp. SKA58] Length = 1423 Score = 1689 bits (4374), Expect = 0.0, Method: Composition-based stats. Identities = 836/1376 (60%), Positives = 1069/1376 (77%), Gaps = 13/1376 (0%) Query: 5 VVFNG-LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 + G R+RK FG E++ +P+LIEVQ+ SY+ FL + P GL+ +SVF Sbjct: 45 ISNTGAKKRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSD--PKIGYVSGLEKTLRSVF 102 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI F+G A ++FV YE + PK+DV++C R +TYA P+++TLRLIVF+VD+ T +S+ Sbjct: 103 PIRDFAGTAEMDFVHYELEDPKYDVEECRQRGITYAAPMRVTLRLIVFEVDQDTETRSVL 162 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 DIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHD+G+ SGK L+A R Sbjct: 163 DIKEQDVYMGDMPLMTGNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFAAR 222 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 +IP +G W+D EFD+KDI++VRIDR+RK+PVT+ L ALG+++EEIL+ FY K+V+ + Sbjct: 223 VIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLNAEEILAQFYNKVVFLRGEG 282 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 W P A G K + +VD +GE V +G+K++ ++ G++ L I +D + Sbjct: 283 GWQIPYVAE-AWRGMKPAFDIVDAKSGEVVFAAGQKISPRAANKAEKDGLETLLIPTDEV 341 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G Y A D++N TGEIYIEAGD + ++LE++ + I + +L +D V+ +IRNTL Sbjct: 342 YGRYSAYDLINESTGEIYIEAGDEVSPENLEKLDKAGIDRLELLDIDHVSTGPWIRNTLK 401 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 DK +DR AL DIYRVMRPG+ T AE++F LFFD ++YDLS VGRVKMNMRL+LD Sbjct: 402 ADKAEDRDQALSDIYRVMRPGEPPTKETAEALFAGLFFDPERYDLSAVGRVKMNMRLDLD 461 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 D V +R EDI+A++K LV+L++GKG IDDIDNLGNRRVRSVGE+L+NQYR+GLLRME Sbjct: 462 AEDTVTTLRTEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVGLLRME 521 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R++KER+SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH RR+SA Sbjct: 522 RAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSA 581 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +F+RVN YGFIETPYR Sbjct: 582 LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFIETPYR 641 Query: 604 KVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 KV DGKV+ DVVYLSAMEE IAQAN+ L EDG F E+L+ R AGE ++ PR+ I Sbjct: 642 KVVDGKVSGDVVYLSAMEEAKHTIAQANAELTEDGGFAEDLISAREAGEFLMAPRDHITL 701 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VA+ S Sbjct: 702 MDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGTVARDS 761 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 GAAI AKRAGIV+QVDA RIVIR+ GD++P SGVDIY L KFQRSNQ+TC+NQRPLV Sbjct: 762 GAAITAKRAGIVDQVDATRIVIRAT-GDVEPGQSGVDIYTLQKFQRSNQDTCINQRPLVN 820 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 VGD + D+IADGPST+ G+LALGRN LVAFMPW+GYN+EDS+LISER+V +DVFTSIH Sbjct: 821 VGDLIDAGDVIADGPSTEFGELALGRNTLVAFMPWNGYNYEDSILISERIVKDDVFTSIH 880 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 IEEFEVMARDTKLGPE+ITRDIPNV EE L+N+DE GI+ +GAEV PGDILVGKITPKGE Sbjct: 881 IEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPKGE 940 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 SPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GTVV+VR+FNRHGIDK+ER++++ERE+ Sbjct: 941 SPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAIEREE 1000 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 I+ LA+D++DE+ IL+R ++RL E+L GQ A + PKG KK V+ L+ E R +WW+ Sbjct: 1001 IDRLAKDREDERGILNRATFNRLQEMLLGQTASAAPKGVKKGVVIDEALLGEVERHEWWK 1060 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 FAV+D++ Q +E++K QY+ + ++ ++F+++++K+Q GD++PPGVL++VKVFVA+KR Sbjct: 1061 FAVEDDQRQAGIEAVKAQYDEAVKLIVEKFEDRVDKLQRGDELPPGVLKMVKVFVAVKRK 1120 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 +Q GDKMAGRHGNKG++SRILP EDMPFL+DGT VDIVLNPLGVPSRMNVGQIFETHLGW Sbjct: 1121 LQPGDKMAGRHGNKGVISRILPIEDMPFLEDGTHVDIVLNPLGVPSRMNVGQIFETHLGW 1180 Query: 1144 ACVGLGKKIKSLINDYKANGDISP-------LRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 A GLG++IK + D++ + ++ L G + ++I D ++ + Sbjct: 1181 AARGLGEQIKHALEDWREANPNAEAGAMPDAVKQRLLDAYG-EQYVDQIERRDAGQIIDL 1239 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 AE GVP++TPVFDGA E ++ ML +A LD SGQS LYDG TG+ FDR VTVG IYM Sbjct: 1240 AEHLGRGVPMATPVFDGAREADVSRMLEIAGLDSSGQSDLYDGRTGDKFDRKVTVGIIYM 1299 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEMLT Sbjct: 1300 LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLT 1359 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 +KSDDVVGRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L Sbjct: 1360 VKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELAAMDEVEDD 1415 >gi|28867847|ref|NP_790466.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. tomato str. DC3000] gi|41017716|sp|Q889X8|RPOB_PSESM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|28851083|gb|AAO54161.1| DNA-directed RNA polymerase, beta subunit [Pseudomonas syringae pv. tomato str. DC3000] Length = 1357 Score = 1689 bits (4373), Expect = 0.0, Method: Composition-based stats. Identities = 719/1365 (52%), Positives = 988/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLNLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILGKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS IT RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITCKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT+++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTDEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + + LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVIELRKFLNEIYNEIGGRQEALEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|104779748|ref|YP_606246.1| DNA-directed RNA polymerase subunit beta [Pseudomonas entomophila L48] gi|158564149|sp|Q1IFX3|RPOB_PSEE4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|95108735|emb|CAK13429.1| RNA polymerase, beta subunit [Pseudomonas entomophila L48] Length = 1357 Score = 1689 bits (4373), Expect = 0.0, Method: Composition-based stats. Identities = 722/1365 (52%), Positives = 986/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL + D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L+TFY V+ G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHLSG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D +G+ ++E G+++T+ + L++ GVK L + + Sbjct: 239 EKLSLELVPQRL-RGEVAVMDIHDG-SGKVIVEQGRRITARHINQLEKAGVKELDVPLEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E + L +I +++ I LY + ++ +I +TL Sbjct: 297 VLGRTTAKAIVHPATGEILAECNTELTTDLLVKIAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF +++YDLS VGR+K N R+ Sbjct: 357 KIDTTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ ++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMGQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G V++D+V+LSA+EE + IAQA+++++E +ELV R E + E + Sbjct: 597 RVVKEGVVSDDIVFLSAIEEADHVIAQASAAMNEKKQLIDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V R DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDVVARGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++++E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKM 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L GQ G G KK TV++ D+++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRAALNGQVVDGG-AGLKKGTVITDDVLNGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI +I + + + LR+FL ++ G E + ++ D+ ++ +A K Sbjct: 1136 LAAKGLGEKIDRMIEEQR---KAAELRTFLTEIYNEIGGRQENLEEFTDEEIMALANNLK 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ L+DG TG F+R VTVGY+YMLKLNH Sbjct: 1193 KGVPMATPVFDGAKEREIKAMLKLADLPESGQMQLFDGRTGNKFERSVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|260752782|ref|YP_003225675.1| DNA-directed RNA polymerase subunit beta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552145|gb|ACV75091.1| DNA-directed RNA polymerase, beta subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 1390 Score = 1688 bits (4371), Expect = 0.0, Method: Composition-based stats. Identities = 825/1373 (60%), Positives = 1063/1373 (77%), Gaps = 15/1373 (1%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG E++D+P+LIEVQ+ SY++FL P++ GL+ +SVFPI F Sbjct: 14 KKRIRKMFGNIHEVVDMPNLIEVQRDSYENFLRSR--PEDGYVSGLEKTLRSVFPIRDFG 71 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 G A L+FV YE + PKFDVD+C R +TYA P+++TLRLIVF+VD T +S+ DIKEQ Sbjct: 72 GVAELDFVQYELEEPKFDVDECRQRGITYAAPMRVTLRLIVFEVDPDTETRSVLDIKEQD 131 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMT++GTF I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A R+IP +G Sbjct: 132 VYMGDMPLMTRNGTFFINGTERVIVSQMHRSPGVLFDHDKGKTHSSGKFLFAARVIPYRG 191 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 W+D EFD+KDI++VRIDR+RK+PVT+ L ALG+++E+IL FY I + + W P Sbjct: 192 SWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNAEQILHHFYNTITFVRGDGGWKVPY 251 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 A G K +++ DTGE V +G+K++ G++ L I ++ + G Y A Sbjct: 252 VAE-SWRGRKPFFDIINGDTGEVVFPAGQKISPRAANKAGRDGLETLLIPTEEIYGHYAA 310 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 D+++ TG I+IEAGD + ++LE + ++ + + +L +D V+ +IRNTL DK +D Sbjct: 311 YDVIDESTGRIWIEAGDEVTPENLELLDNAGVATLELLDIDHVSTGPWIRNTLKADKAED 370 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 R AL +IYRVMRPG+ T AE++F LFFD ++YDLS VGRVK+NMRL+LD PD V Sbjct: 371 RDHALAEIYRVMRPGEPPTKETAEALFYGLFFDPERYDLSAVGRVKLNMRLDLDCPDTVT 430 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 +R EDI+A++K LVDL++GKG +DDIDNLGNRRVRSVGE+L+NQYR+GLLRMER++KER Sbjct: 431 TLRAEDILAVVKTLVDLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKER 490 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 +SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH RR+SALG GG+ Sbjct: 491 MSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGL 550 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +F+R+N YGFIETPYRKV D K Sbjct: 551 TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRINKYGFIETPYRKVVDHK 610 Query: 610 VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPK 669 VTN+V+YLSAMEE +AQAN+ LD +G F EELV R AGE ++ PRE+I +D SPK Sbjct: 611 VTNEVIYLSAMEESRYTVAQANAELDAEGHFVEELVSAREAGEFLMAPREQITLMDVSPK 670 Query: 670 QVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVA 729 Q+VS+AASLIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VA+ SGAAI A Sbjct: 671 QLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEETVARDSGAAISA 730 Query: 730 KRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVR 789 +RAGIV+QVDA RIVIR+ G+++ GVDIYRLMKFQRSNQ+TC+NQRPLV VGD V Sbjct: 731 RRAGIVDQVDASRIVIRTT-GEIEAGKPGVDIYRLMKFQRSNQSTCINQRPLVSVGDYVN 789 Query: 790 RNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEV 849 D++ADGPST+LG+LALGRN+LVAFMPW+GYN+EDS+LISER+V +DVFTSIHI+EFEV Sbjct: 790 AGDVLADGPSTELGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIDEFEV 849 Query: 850 MARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPE 909 MARDTKLGPE+ITRDIPNV E+ L+N+DE GI+ +GAEV PGDILVGKITPKGESPMTPE Sbjct: 850 MARDTKLGPEDITRDIPNVGEDALRNLDEAGIVYIGAEVQPGDILVGKITPKGESPMTPE 909 Query: 910 EKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLAR 969 EKLLRAIFGEKA DVRDTSLR+P GV+GT+VDVR+FNRHG+DK+ER++++ERE+IE L + Sbjct: 910 EKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERAMAIEREEIERLTK 969 Query: 970 DKDDEQVILDRNIYSRLMEILCGQNAVSGP-KGFKKSTVLSSDLISEYPRSQWWQFAVQD 1028 D++DE+ IL+R Y++L E L GQ + P K K + + ++ +W++FAV+D Sbjct: 970 DREDERAILNRATYAQLQEKLLGQTVAAAPYKHIVKGARIDIETLASVEPHKWFKFAVED 1029 Query: 1029 EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGD 1088 + Q +E++K QY+++ + RF++++EK Q GD++PPGVL++VKVFVA+KR +Q GD Sbjct: 1030 DARQAELEAIKNQYDSADEAIRKRFEDRVEKAQRGDELPPGVLKMVKVFVAVKRKLQPGD 1089 Query: 1089 KMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGL 1148 KMAGRHGNKG++SRILP EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFETHLGWA GL Sbjct: 1090 KMAGRHGNKGVISRILPAEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFETHLGWAARGL 1149 Query: 1149 GKKIKSLINDYKANG---------DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 G K+++ + +++ +R + +V G + E I +D ++ +A Sbjct: 1150 GAKVRTALEEWREANADRYEWDFSPPEVVRERMIEVYGEK-YAEDIKSREDREIVEMAGL 1208 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 ++GVP++TPVFDGA E I+ ML +A LD+SGQ LYDG TGE FDR VTVGYIYMLKL Sbjct: 1209 LRNGVPMATPVFDGAKPEDISEMLNLAGLDDSGQVELYDGRTGEQFDRKVTVGYIYMLKL 1268 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEMLT+KS Sbjct: 1269 HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKS 1328 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 DDVVGRT+VYE+IV G+DTFE G PESFNVLVKEM +LGL+++L+ S+ K+ Sbjct: 1329 DDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMHSLGLNVELKTSKAKDED 1381 >gi|330976633|gb|EGH76677.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1357 Score = 1688 bits (4371), Expect = 0.0, Method: Composition-based stats. Identities = 718/1365 (52%), Positives = 988/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMNQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR+N YGF+++PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARINQYGFLKSPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT ++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|114799111|ref|YP_761536.1| DNA-directed RNA polymerase subunit beta [Hyphomonas neptunium ATCC 15444] gi|122942154|sp|Q0BYA7|RPOB_HYPNA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|114739285|gb|ABI77410.1| DNA-directed RNA polymerase, beta subunit [Hyphomonas neptunium ATCC 15444] Length = 1378 Score = 1687 bits (4370), Expect = 0.0, Method: Composition-based stats. Identities = 840/1372 (61%), Positives = 1061/1372 (77%), Gaps = 13/1372 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + F R+RK FG+ PE I++P+LIEVQ+ SY+ FL MN ++R ++GL FKSV Sbjct: 1 MALSFTEKKRIRKNFGRIPEAIEMPNLIEVQRESYEAFLQMNTPREQRTDDGLGGVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPIT FS A LE+VSYEF+ PKFDV++C+ RDLT+ PLK+ L+L+VFDVDE TGA+S+ Sbjct: 61 FPITDFSERATLEYVSYEFEQPKFDVEECVQRDLTFQAPLKVRLQLVVFDVDEDTGARSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ Y+GD+PLMT GTFVI G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KEVKEQECYLGDIPLMTDKGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++++RIDR+RK+P T+ L ALG D+E+IL FY + +Y Sbjct: 181 RIIPYRGSWLDFEFDAKDVLNIRIDRKRKLPATTMLYALGYDTEQILDQFYTRSIYRLDK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W A D G K L+D TG+ V E+GKK+T+ K + E G + +TS+ Sbjct: 241 KGWITSFRA-DAWKGVKPEFELIDAKTGKSVAEAGKKITALKAKRMAEAGTDEILVTSEA 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G ++A D+VN ETGEI+ EAGD ++E + E+ I I +L +D+ ++RNTL Sbjct: 300 LIGKFLARDVVNLETGEIFGEAGDALEEPIIAEMREYGIDSIEVLDIDAGGRGPWLRNTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL-- 420 DKN+ R +AL DIYRVMRPG+ T A+++F LFFD ++YDLS VGRVKMNMRL Sbjct: 360 KADKNETRFEALSDIYRVMRPGEPPTQEAADALFGQLFFDPERYDLSAVGRVKMNMRLSV 419 Query: 421 ----NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 D++R +R EDII ++K+++DL++GKG +DDIDNLGNRRVRSVGE+++N YR Sbjct: 420 AVREYESAADNMRTLRNEDIIGVMKVILDLKDGKGEVDDIDNLGNRRVRSVGELMENNYR 479 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GL+RMER+IKER+ +VDID+VMP DLINAKPVV+AV EFF SSQLSQ + N LS IT Sbjct: 480 IGLVRMERAIKERMGAVDIDTVMPHDLINAKPVVAAVREFFGSSQLSQFMDQTNPLSEIT 539 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + ARVN YG Sbjct: 540 HKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYG 599 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE+PYR+V D K+T +VVYLSAMEE IAQAN+++++ G E V R AGE ++ Sbjct: 600 FIESPYRRVKDAKLTEEVVYLSAMEESIYSIAQANATVNDKGELVNEFVNARVAGEATMI 659 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 +E++ ++D SPKQVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K+EAPFVGTGME Sbjct: 660 AKEEVQYMDVSPKQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKSEAPFVGTGME 719 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 +VVA+ S AAIVA+RAG+VEQVDA+RIV+R+ E L+ S SGVDIYRL KF+RSNQN+C+ Sbjct: 720 AVVARDSRAAIVARRAGVVEQVDAMRIVVRATED-LEGSKSGVDIYRLAKFRRSNQNSCI 778 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP+ KVGD V +NDIIADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+LISER+V + Sbjct: 779 NQRPIAKVGDVVSKNDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILISERIVRD 838 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ VGAEV GDILVG Sbjct: 839 DVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAVGAEVKAGDILVG 898 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K+TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP G +GTVVDVRIFNRHGIDK++R+ Sbjct: 899 KVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGDAGTVVDVRIFNRHGIDKDQRA 958 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEY 1016 + +EREQIE L DK+DEQ IL+RN YSRL +IL G++A +GPKGFK ++ + E Sbjct: 959 LQIEREQIEKLQEDKEDEQSILERNTYSRLRDILIGKDAATGPKGFKAG-KIAEAALEEL 1017 Query: 1017 PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 + QWW+ ++ EK Q +++L+ Q++ S LE RF +K+EK+Q GDD+PPGV++VVKV Sbjct: 1018 TQRQWWEIELKSEKAQAELQALREQFDASIRELEARFNDKVEKVQRGDDLPPGVMKVVKV 1077 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 F+A+KR +Q GDKMAGRHGNKG++S+I P EDMPFL+DGTPVDIVLNPLGVPSRMNVGQI Sbjct: 1078 FLAVKRKLQPGDKMAGRHGNKGVISKINPLEDMPFLEDGTPVDIVLNPLGVPSRMNVGQI 1137 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 ETH GWAC GLG I + ++ D++ L++ L G + D ++ + Sbjct: 1138 LETHTGWACRGLGNIIDKALEEFHQKHDVAALKASLTHAYGDKQEMPE----TDAEIIEL 1193 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A + GVP++TPVFDGA EE IN +L A LD SGQ L+DG TG F RPVTVGY Y+ Sbjct: 1194 AGNLRGGVPIATPVFDGAREEDINDLLTRAGLDTSGQVRLFDGRTGVAFTRPVTVGYKYL 1253 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V +K++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1254 LKLHHLVDEKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1313 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 +KSDD GR +VYESIV G+D+FE G PESFNVL+KEM++LGL+++L R Sbjct: 1314 VKSDDTAGRAKVYESIVRGDDSFEAGIPESFNVLIKEMRSLGLNVELLEDRG 1365 >gi|213969207|ref|ZP_03397345.1| DNA-directed RNA polymerase, beta subunit [Pseudomonas syringae pv. tomato T1] gi|213925885|gb|EEB59442.1| DNA-directed RNA polymerase, beta subunit [Pseudomonas syringae pv. tomato T1] Length = 1357 Score = 1687 bits (4370), Expect = 0.0, Method: Composition-based stats. Identities = 720/1365 (52%), Positives = 988/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLNLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILGKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFVGQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT+++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTDEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + + LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVIELRKFLNEIYNEIGGRQEALEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|254449101|ref|ZP_05062553.1| DNA-directed RNA polymerase, beta subunit [gamma proteobacterium HTCC5015] gi|198261293|gb|EDY85586.1| DNA-directed RNA polymerase, beta subunit [gamma proteobacterium HTCC5015] Length = 1355 Score = 1687 bits (4370), Expect = 0.0, Method: Composition-based stats. Identities = 726/1364 (53%), Positives = 980/1364 (71%), Gaps = 9/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F RVRK FGK P I+++P L+ Q SY FL ++ A D+R GL AAF SV Sbjct: 1 MAYSFTDKKRVRKDFGKRPTILEVPFLLATQIESYREFLQLDKASDKRDPMGLHAAFSSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG LE+VSY P+FDV +C R TYA PL++ +RL++ D D + I Sbjct: 61 FPIVSYSGHVSLEYVSYRLGEPEFDVRECKVRGSTYASPLRVNVRLVIRDKD---NQEKI 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+IKEQ +YMG++PLMT GTFVI G +R++VSQLHRSPG+ FDHDKG++ SGKLL++ Sbjct: 118 KEIKEQEVYMGEMPLMTDTGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L +LG D+ +IL F+ K Sbjct: 178 RVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPATILLRSLGYDNVQILDMFFEKNNLHVGK 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + + V+E+G+++T ++ L++ GV L + + Sbjct: 238 ENCELELVPERL-RGEIASFDIKSGK--KVVVETGRRITMRHIRELEKDGVNKLEVPDEW 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+V+ TGE+ I A + E+ L +I ++I+D +LY + +++ YI +TL Sbjct: 295 LLGKRLAHDVVDSATGELLIPANGELTEERLTQIRDAKIKDFQVLYTNDLDHGPYISHTL 354 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +A ++IYR+MRPG+ T A+++F LFF D+YDLS VGR+K N RL Sbjct: 355 DIDPSTTELEAQVEIYRMMRPGEPPTKDAAQALFKNLFFSEDRYDLSAVGRMKFNRRLGR 414 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + ED++ ++ ++++RNG G +DDID+LGNRRVR VGEM +N +R+GL+R+ Sbjct: 415 EEVTGAGTLSDEDVLDVMHEIINIRNGNGQVDDIDHLGNRRVRCVGEMAENAFRVGLVRV 474 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S V+ + ++PQD+INAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 475 ERAVKERLSLVESEGLVPQDIINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 534 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR N YGFIETPY Sbjct: 535 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFIETPY 594 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG T++V YLSA+EE IAQAN+ +DE G F +L+ CR E + +K+ Sbjct: 595 RKVVDGVATSEVEYLSAIEENRFVIAQANAPMDEKGRFNNDLISCRHMNEFTMSTPDKVQ 654 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q+VS+AAS+IPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 655 YMDVSPRQIVSVAASIIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERTVAVD 714 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGAA+ A+R G V+ VDA R+VIR + + +GVDIY L K+ RSNQNTCVNQRPLV Sbjct: 715 SGAAVKAERGGFVDSVDAARVVIRVNDDETIAGETGVDIYNLTKYTRSNQNTCVNQRPLV 774 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD + R DI+ADGPSTDLG+LALG+NMLVAFMPWHGYNFEDS+L+SER+V ED FT+I Sbjct: 775 RPGDVIARGDILADGPSTDLGELALGQNMLVAFMPWHGYNFEDSILVSERVVKEDRFTTI 834 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE + RDTKLG EEIT DIPNVSE+ L +DE GI+ VGAEV P DILVGK+TPKG Sbjct: 835 HIEELTCVCRDTKLGAEEITADIPNVSEQLLSKLDESGIVYVGAEVKPNDILVGKVTPKG 894 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLR+ SGV GTV+DVR+F R G++K+ER+ S+ER Sbjct: 895 ETQLTPEEKLLRAIFGEKASDVKDTSLRIGSGVHGTVIDVRVFTRDGVEKDERAKSIERI 954 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++E + +D +D+ I++ ++++R+ +L GQ GP+G KK L+++ +SE +W+ Sbjct: 955 ELEQVRQDLNDQLRIVEGDMFARVERLLVGQTVDGGPRGIKKGDKLTAEQLSEVEHDKWF 1014 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++DE+ +++E +K E + + RF++K K+ GD++ PGV ++VKV+VA+KR Sbjct: 1015 EIRLRDEEASKSLEGMKATLEGFREETDRRFEHKKSKVTAGDELQPGVQKMVKVYVAVKR 1074 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++SR++P EDMP+ +DG PVD+VLNPLGVPSRMN+GQI ETHLG Sbjct: 1075 RLQPGDKMAGRHGNKGVISRVVPVEDMPYGEDGRPVDVVLNPLGVPSRMNIGQILETHLG 1134 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I+ ++ K D LR F +K+ + ++DD + +AE K Sbjct: 1135 WAARGLGHRIEEMLEQQKKAKD---LRDFFDKIYNHRDKKLDLKQFNDDEIFALAENLKG 1191 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA+E + ML++A L ESGQ+ L DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1192 GVPMATPVFDGAEEPEVRQMLKLAGLPESGQTRLIDGRTGEYFERPVTVGYMYMLKLNHL 1251 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1252 VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1311 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GR ++Y++IV G E G PESFNVL+KE+++LGL+I+LEN Sbjct: 1312 NGRNKLYKNIVDGEHRMEPGMPESFNVLLKEIRSLGLNIELEND 1355 >gi|331018153|gb|EGH98209.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 1357 Score = 1687 bits (4370), Expect = 0.0, Method: Composition-based stats. Identities = 719/1365 (52%), Positives = 988/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLNLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILGKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT+++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTDEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D SLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDASLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + + LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVIELRKFLNEIYNEIGGRQEALEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVGDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|71737237|ref|YP_276713.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|88909628|sp|Q48D29|RPOB_PSE14 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|71557790|gb|AAZ37001.1| DNA-directed RNA polymerase, beta subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 1357 Score = 1687 bits (4369), Expect = 0.0, Method: Composition-based stats. Identities = 718/1365 (52%), Positives = 987/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS IT RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITLKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT ++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|330962532|gb|EGH62792.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1357 Score = 1687 bits (4368), Expect = 0.0, Method: Composition-based stats. Identities = 719/1365 (52%), Positives = 988/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILGKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLS++ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSRIMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT ++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + + LR FL ++ G E + D D +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVVELRKFLNEIYNEIGGRQESLEDLSDKEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+RPVTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|298489103|ref|ZP_07007125.1| DNA-directed RNA polymerase beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156415|gb|EFH97513.1| DNA-directed RNA polymerase beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1357 Score = 1687 bits (4368), Expect = 0.0, Method: Composition-based stats. Identities = 719/1365 (52%), Positives = 987/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTIEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT ++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|160872553|ref|ZP_02062685.1| DNA-directed RNA polymerase, beta subunit [Rickettsiella grylli] gi|159121352|gb|EDP46690.1| DNA-directed RNA polymerase, beta subunit [Rickettsiella grylli] Length = 1377 Score = 1686 bits (4367), Expect = 0.0, Method: Composition-based stats. Identities = 728/1365 (53%), Positives = 992/1365 (72%), Gaps = 3/1365 (0%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I++ P L+ Q SY FL ++ +PD ++GL AAFKS+F Sbjct: 15 SYSFTEKKRIRKNFGKQATIMEAPYLLATQIESYHRFLQLDTSPDALEDKGLNAAFKSIF 74 Query: 64 PITAF-SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 PI+++ SG A LE+++Y P FDV +C R LTY PL++ +RL+++D + G+ I Sbjct: 75 PISSYASGEATLEYINYRIGQPSFDVKECQARGLTYGAPLRVKMRLVIYDKEAVPGSTKI 134 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K IKEQ +YMG+LPLMT G+FVI G R+VVSQLHRSPG+ F+HDKG+ SGKLLYA Sbjct: 135 KYIKEQEVYMGELPLMTDTGSFVINGTDRVVVSQLHRSPGVFFEHDKGKTHSSGKLLYAA 194 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+ T L ALG SEEIL+ F+ V+ +G Sbjct: 195 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLAATILLRALGYTSEEILALFFNNNVFYLKG 254 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + + G+ ++E G+++ ++ +++ +K L + D Sbjct: 255 ENAVLDLVPERL-RGEIASFDIKNAA-GKVIVEQGRRIAVRQIREIEKAKIKQLELPIDY 312 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+ +VN ETGEI ++A + ++++ + + I LY + +++ AYI TL Sbjct: 313 LIGKTLAKPVVNTETGEILVDANAELTADIIKKLIEARVEKIETLYTNDLDSGAYISTTL 372 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + ++++AL++IYR+MRPG+ T AE++F LFF SD+YDLS+VGR+K N RL Sbjct: 373 RIDPSHNQQEALVEIYRMMRPGEPPTKEAAEALFKNLFFVSDRYDLSSVGRMKFNRRLGR 432 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + K+DI+ +++ L+++RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 433 EEITGSGTLTKDDIVGVLRELIEIRNGKGDVDDIDHLGNRRVRSVGEMAENQFRIGLVRV 492 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++++R+S + +++MPQDLINAKP+ +A+ EFF SSQLSQ + VN LS ITH RR+S Sbjct: 493 ERAVRDRLSVAESENLMPQDLINAKPISAAIKEFFGSSQLSQFMDQVNPLSEITHKRRVS 552 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGF+ETPY Sbjct: 553 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETPY 612 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +GKVT + YLSA+EE IAQAN+ LD G ++L+ CR E +L +K++ Sbjct: 613 RKVENGKVTQTIQYLSAIEEGKYVIAQANTRLDSHGKLIDDLIPCRHRNESMLTTADKVN 672 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTGME VA Sbjct: 673 YMDISPAQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRTEKPLVGTGMERKVAVD 732 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR GI++ VDA RIV+R + + T+GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 733 SGVVMVAKRGGIIDSVDAGRIVVRVDDEEALAGTAGVDIYNLTKYTRSNQNTCINQRPLV 792 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD+++++D++ADGPSTDLG+LALGRN+LVAFMPW+GYNFEDS+LISER+VSED FT+I Sbjct: 793 KKGDKIKKDDVLADGPSTDLGELALGRNLLVAFMPWNGYNFEDSILISERIVSEDCFTTI 852 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE +ARDTKLG EE++ DIPNV E L +D+ GI+ +GA V GDILVGK+TPKG Sbjct: 853 HIEELTCIARDTKLGSEEVSSDIPNVGESALSKLDKSGIVHLGAWVEAGDILVGKVTPKG 912 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R G++K++R++S+E Sbjct: 913 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMRGTVIDVQVFTRDGLEKDKRALSIEEM 972 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ + +D DE IL+ + Y RL +L G A SGP K + ++ + + QW+ Sbjct: 973 ALDKIKKDLYDEFRILENDCYQRLEVLLVGATASSGPNKLKSGSKITLTYLQSLTKDQWF 1032 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 +++DE V + +E++ Q ++ L+++F+NK +K+ GDD+ PG+L++VKV++A+KR Sbjct: 1033 SISLRDETVNQQLEAVAKQLADARLALDEKFENKRKKLTQGDDLAPGILKIVKVYLAIKR 1092 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+++DGTPVDIVLNPLGVPSRMNVGQ+ ETHLG Sbjct: 1093 CIQPGDKMAGRHGNKGVISTIIPVEDMPYMEDGTPVDIVLNPLGVPSRMNVGQVLETHLG 1152 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG KI +++ K+ +I S + + + D S+L +AE + Sbjct: 1153 WAAKGLGNKIAKMLDAQKSIKEIKHFLSAIYNDNKETAQKVNLDKLSDASILELAENLRQ 1212 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDG E I MLR+AD ESGQ++LYDG TGE F+RPVT+GY+YMLKLNH+ Sbjct: 1213 GVPMATPVFDGVTEAEIKRMLRLADFPESGQTVLYDGRTGERFERPVTLGYMYMLKLNHL 1272 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1273 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1332 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 GRT++Y++IV G+ E G PESFNVLVKE+++L ++ +LE Sbjct: 1333 SGRTKMYKNIVDGDHQMEAGMPESFNVLVKEIRSLAINAELETKD 1377 >gi|320331987|gb|EFW87923.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. glycinea str. race 4] Length = 1357 Score = 1686 bits (4367), Expect = 0.0, Method: Composition-based stats. Identities = 717/1365 (52%), Positives = 986/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++G+FVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGSFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ N LS I H RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMGQNNPLSEIIHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT ++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALLGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|241761250|ref|ZP_04759338.1| DNA-directed RNA polymerase, beta subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374157|gb|EER63654.1| DNA-directed RNA polymerase, beta subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1401 Score = 1686 bits (4365), Expect = 0.0, Method: Composition-based stats. Identities = 825/1373 (60%), Positives = 1063/1373 (77%), Gaps = 15/1373 (1%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG E++D+P+LIEVQ+ SY++FL P++ GL+ +SVFPI F Sbjct: 25 KKRIRKMFGNIHEVVDMPNLIEVQRDSYENFLRSR--PEDGYVSGLEKTLRSVFPIRDFG 82 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 G A L+FV YE + PKFDVD+C R +TYA P+++TLRLIVF+VD T +S+ DIKEQ Sbjct: 83 GVAELDFVQYELEEPKFDVDECRQRGITYAAPMRVTLRLIVFEVDPDTETRSVLDIKEQD 142 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMT++GTF I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A R+IP +G Sbjct: 143 VYMGDMPLMTRNGTFFINGTERVIVSQMHRSPGVLFDHDKGKTHSSGKFLFAARVIPYRG 202 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 W+D EFD+KDI++VRIDR+RK+PVT+ L ALG+++E+IL FY I + + W P Sbjct: 203 SWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNAEQILHHFYNTITFVRGDGGWKVPY 262 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 A G K +++ DTGE V +G+K++ G++ L I ++ + G Y A Sbjct: 263 VAE-SWRGRKPFFDIINGDTGEVVFPAGQKISPRAANKAGRDGLETLLIPTEEIYGHYAA 321 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 D+++ TG I+IEAGD + ++LE + ++ + + +L +D V+ +IRNTL DK +D Sbjct: 322 YDVIDESTGRIWIEAGDEVTPENLELLDNAGVATLELLDIDHVSTGPWIRNTLKADKAED 381 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 R AL +IYRVMRPG+ T AE++F LFFD ++YDLS VGRVK+NMRL+LD PD V Sbjct: 382 RDHALAEIYRVMRPGEPPTKETAEALFYGLFFDPERYDLSAVGRVKLNMRLDLDCPDTVT 441 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 +R EDI+A++K LVDL++GKG +DDIDNLGNRRVRSVGE+L+NQYR+GLLRMER++KER Sbjct: 442 TLRAEDILAVVKTLVDLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKER 501 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 +SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH RR+SALG GG+ Sbjct: 502 MSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGL 561 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +F+R+N YGFIETPYRKV D K Sbjct: 562 TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRINKYGFIETPYRKVVDHK 621 Query: 610 VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPK 669 VTN+V+YLSAMEE +AQAN+ LD +G F EELV R AGE ++ PRE+I +D SPK Sbjct: 622 VTNEVIYLSAMEESRYTVAQANAELDAEGHFVEELVSAREAGEFLMAPREQITLMDVSPK 681 Query: 670 QVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVA 729 Q+VS+AASLIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VA+ SGAAI A Sbjct: 682 QLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEETVARDSGAAISA 741 Query: 730 KRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVR 789 +RAGIV+QVDA RIVIR+ G+++ GVDIYRLMKFQRSNQ+TC+NQRPLV VGD V Sbjct: 742 RRAGIVDQVDASRIVIRTT-GEIEAGKPGVDIYRLMKFQRSNQSTCINQRPLVSVGDYVN 800 Query: 790 RNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEV 849 D++ADGPST+LG+LALGRN+LVAFMPW+GYN+EDS+LISER+V +DVFTSIHI+EFEV Sbjct: 801 AGDVLADGPSTELGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIDEFEV 860 Query: 850 MARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPE 909 MARDTKLGPE+ITRDIPNV E+ L+N+DE GI+ +GAEV PGDILVGKITPKGESPMTPE Sbjct: 861 MARDTKLGPEDITRDIPNVGEDALRNLDEAGIVYIGAEVQPGDILVGKITPKGESPMTPE 920 Query: 910 EKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLAR 969 EKLLRAIFGEKA DVRDTSLR+P GV+GT+VDVR+FNRHG+DK+ER++++ERE+IE L + Sbjct: 921 EKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERAMAIEREEIERLTK 980 Query: 970 DKDDEQVILDRNIYSRLMEILCGQNAVSGP-KGFKKSTVLSSDLISEYPRSQWWQFAVQD 1028 D++DE+ IL+R Y++L E L GQ + P K K + + ++ +W++FAV+D Sbjct: 981 DREDERAILNRATYAQLQEKLLGQTVAAAPYKHIVKGARIDIETLASVEPHKWFKFAVED 1040 Query: 1029 EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGD 1088 + Q +E++K QY+++ + RF++++EK Q GD++PPGVL++VKVFVA+KR +Q GD Sbjct: 1041 DARQAELEAIKNQYDSADEAIRKRFEDRVEKAQRGDELPPGVLKMVKVFVAVKRKLQPGD 1100 Query: 1089 KMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGL 1148 KMAGRHGNKG++SRILP EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFETHLGWA GL Sbjct: 1101 KMAGRHGNKGVISRILPAEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFETHLGWAARGL 1160 Query: 1149 GKKIKSLINDYKANG---------DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 G K+++ + +++ +R + +V G + E I +D ++ +A Sbjct: 1161 GAKVRTALEEWREANVDRYEWDFSPPEVVRERMIEVYGEK-YAEDIKSREDREIVEMAGL 1219 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 ++GVP++TPVFDGA E I+ ML +A LD+SGQ LYDG TGE FDR VTVGYIYMLKL Sbjct: 1220 LRNGVPMATPVFDGAKPEDISEMLNLAGLDDSGQVELYDGRTGEQFDRKVTVGYIYMLKL 1279 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEMLT+KS Sbjct: 1280 HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKS 1339 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 DDVVGRT+VYE+IV G+DTFE G PESFNVLVKEM +LGL+++L+ S+ K+ Sbjct: 1340 DDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMHSLGLNVELKTSKAKDED 1392 >gi|77165794|ref|YP_344319.1| DNA-directed RNA polymerase, beta subunit [Nitrosococcus oceani ATCC 19707] gi|254433213|ref|ZP_05046721.1| DNA-directed RNA polymerase, beta subunit [Nitrosococcus oceani AFC27] gi|88909147|sp|Q3J8Q7|RPOB_NITOC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|76884108|gb|ABA58789.1| DNA-directed RNA polymerase subunit beta [Nitrosococcus oceani ATCC 19707] gi|207089546|gb|EDZ66817.1| DNA-directed RNA polymerase, beta subunit [Nitrosococcus oceani AFC27] Length = 1359 Score = 1685 bits (4364), Expect = 0.0, Method: Composition-based stats. Identities = 722/1364 (52%), Positives = 986/1364 (72%), Gaps = 5/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 R+RK F K I+ P L+ +Q S+ FL M++ P +R ++GL AAFKSV Sbjct: 1 MPYSLTEKKRIRKDFSKLHSILKTPFLLTIQIGSFLDFLQMDVPPGKRKDKGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++ A L++ SY P F+V +C R LTYA PL++ LRL+++D + + + Sbjct: 61 FPIKSYTEYAELQYSSYHLGVPSFEVKECQVRGLTYAAPLRVKLRLVIYDKESPASEQVV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD+KEQ +YMG++PLMT G FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 KDVKEQEVYMGEIPLMTPKGNFVINGTERVIVSQLHRSPGVIFEHDKGKTHSSGKLLFSA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+ T L ALG +EEIL F+ I ++G Sbjct: 181 RIIPYRGSWLDFEFDPKDCVYARIDRRRKLLATILLRALGYSTEEILIMFFETISVKRQG 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + D GE ++E+G+++T+ +K +++ G+K L + Sbjct: 241 SSYLLDLVPQRL-RGESLPFDIASPD-GEVIVEAGRRVTARHIKQMEKAGMKTLPAPKEF 298 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ TGE+ +A D I + + + + I+ ++Y + ++ ++I ++L Sbjct: 299 LIGKTLARDLIDAGTGEVLAKANDEITAELMTALEDANIQAFDLIYTNDLDRGSFISDSL 358 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +A ++IYRVMRPG+ T A+++F LFF+ ++YDLS VGR+K N RL Sbjct: 359 RLDPTTTPLEAQMEIYRVMRPGEPPTKEAAQNLFQNLFFNPERYDLSPVGRMKFNRRLGK 418 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ +IK LVD+RNG G++DD+D+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 419 EDITGPSILSKEDIVDVIKTLVDIRNGYGSVDDVDHLGNRRVRSVGEMAENQFRVGLVRV 478 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + + +MPQ+LINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 479 ERAVRERLSLAESEGLMPQELINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 538 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGFIETPY Sbjct: 539 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARINQYGFIETPY 598 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKV +V YLSA+EE IAQAN++ DE+G + LV CR E L+P EK+ Sbjct: 599 RKVVDGKVAGEVDYLSAIEEGQYVIAQANAAADEEGRLIDMLVSCRHKNEFTLLPPEKVQ 658 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +ID SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+AE P VGTGME VVA+ Sbjct: 659 YIDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAETPLVGTGMEQVVARD 718 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R GIV+ VDA R+V+R + + GVDIY L+K+ RSNQNTC+NQ PLV Sbjct: 719 SGVMVVARRGGIVDSVDAARVVVRVNDEETASDEPGVDIYNLIKYARSNQNTCINQSPLV 778 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V D++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V ED FTSI Sbjct: 779 KPGDTVAIGDVLADGPSTDMGELALGQNLLVAFMPWNGYNFEDSILISERVVEEDRFTSI 838 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE ARDTKLGPEEI+ DIPNVSE L +DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 839 HIEELTCFARDTKLGPEEISSDIPNVSEAALSKLDEAGIVYIGAEVKPGDILVGKVTPKG 898 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRV SG+ GTV+DV++F R G++K+ R++ +E Sbjct: 899 ETQLTPEEKLLRAIFGEKASDVKDTSLRVSSGMQGTVIDVQVFTRDGVEKDTRALEIEEM 958 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ + +D DE I++ +IY RL ++L G+ GP K T ++ + +++ PR +W+ Sbjct: 959 ELAKIKKDLRDEFRIVETDIYQRLEKVLVGKTVEGGPAELKAGTQITQNYLADLPRERWF 1018 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++ E+ R +ES+ Q + + ++++F+ + K+ G D+PPGV ++VKV++A+KR Sbjct: 1019 EIRLRSEEAGRQLESVAGQLKEQRVAMDEKFQQQRAKLTSGHDLPPGVQKMVKVYLAVKR 1078 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++S I+P EDMP+++DGTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1079 RVQPGDKMAGRHGNKGVISTIVPIEDMPYMEDGTPVDIVLNPLGVPSRMNIGQILETHLG 1138 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG+KI +L+ ++ S LR FL+++ E ++ D+ VL +A K Sbjct: 1139 WAAKGLGRKIGALL---ESGEQASELRVFLDRIYNASGKKEDLNSLSDEEVLELANNLKD 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E+ I +ML +ADL +GQ+ LYDG +GE F RPVTVGY++MLKLNH+ Sbjct: 1196 GVPMATPVFDGASEQEIKTMLELADLPTNGQTNLYDGRSGEAFARPVTVGYMHMLKLNHL 1255 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW +++YGAAY LQEMLT+KSDDV Sbjct: 1256 VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALESYGAAYTLQEMLTVKSDDV 1315 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL KE++ALG+ I+LE Sbjct: 1316 NGRTKMYKNIVDGDYRMEAGMPESFNVLTKEIRALGIDIELEQD 1359 >gi|56551627|ref|YP_162466.1| DNA-directed RNA polymerase subunit beta [Zymomonas mobilis subsp. mobilis ZM4] gi|81355250|sp|Q5NPK5|RPOB_ZYMMO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|56543201|gb|AAV89355.1| DNA-directed RNA polymerase, beta subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 1401 Score = 1685 bits (4364), Expect = 0.0, Method: Composition-based stats. Identities = 824/1373 (60%), Positives = 1062/1373 (77%), Gaps = 15/1373 (1%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG E++D+P+LIEVQ+ SY++FL P++ GL+ +SVFPI F Sbjct: 25 KKRIRKMFGNIHEVVDMPNLIEVQRDSYENFLRSR--PEDGYVSGLEKTLRSVFPIRDFG 82 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 G A L+FV YE + PKFDVD+C R +TYA P+++TLRLIVF+VD T +S+ DIKEQ Sbjct: 83 GVAELDFVQYELEEPKFDVDECRQRGITYAAPMRVTLRLIVFEVDPDTETRSVLDIKEQD 142 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMT++GTF I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A R+IP +G Sbjct: 143 VYMGDMPLMTRNGTFFINGTERVIVSQMHRSPGVLFDHDKGKTHSSGKFLFAARVIPYRG 202 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 W+D EFD+KDI++VRIDR+RK+PVT+ L ALG+++E+IL FY I + + W P Sbjct: 203 SWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNAEQILHHFYNTITFVRGDGGWKVPY 262 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 A G K +++ DTGE V +G+K++ G++ L I ++ + G Y A Sbjct: 263 VAE-SWRGRKPFFDIINGDTGEVVFPAGQKISPRAANKAGRDGLETLLIPTEEIYGHYAA 321 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 D+++ TG I+IEAGD + ++LE + ++ + + +L +D V+ +IRNTL DK +D Sbjct: 322 YDVIDESTGRIWIEAGDEVTPENLELLDNAGVATLELLDIDHVSTGPWIRNTLKADKAED 381 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 R AL +IYRVMRPG+ T AE++F LFFD ++YDLS VGRVK+NMRL+LD PD V Sbjct: 382 RDHALAEIYRVMRPGEPPTKETAEALFYGLFFDPERYDLSAVGRVKLNMRLDLDCPDTVT 441 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 +R EDI+A++K LVDL++GKG +DDIDNLGNRRVRSVGE+L+NQYR+GLLRMER++KER Sbjct: 442 TLRAEDILAVVKTLVDLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKER 501 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 +SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH RR+SALG GG+ Sbjct: 502 MSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGL 561 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +F+R+N YGFIETPYRKV D K Sbjct: 562 TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRINKYGFIETPYRKVVDHK 621 Query: 610 VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPK 669 VTN+V+YLSAMEE +AQAN+ LD +G F EELV R AGE ++ PRE+I +D SPK Sbjct: 622 VTNEVIYLSAMEESRYTVAQANAELDAEGHFVEELVSAREAGEFLMAPREQITLMDVSPK 681 Query: 670 QVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVA 729 Q+VS+AASLIPFLENDD+NR LMG NMQRQAV L++AEAPFVGTGME VA+ SGAAI A Sbjct: 682 QLVSVAASLIPFLENDDANRALMGSNMQRQAVSLVRAEAPFVGTGMEETVARDSGAAISA 741 Query: 730 KRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVR 789 +RAGIV+QVDA RIVIR+ G+++ GVDIYRLMKFQRSNQ+TC+NQRPLV VGD V Sbjct: 742 RRAGIVDQVDASRIVIRTT-GEIEAGKPGVDIYRLMKFQRSNQSTCINQRPLVSVGDYVN 800 Query: 790 RNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEV 849 D++ADGPST+LG+LALGRN+LVAFMPW+GYN+EDS+LISER+V +DVFTSIHI+EFEV Sbjct: 801 AGDVLADGPSTELGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIDEFEV 860 Query: 850 MARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPE 909 MARDTKLGPE+ITRDIPNV E+ L+N+DE GI+ +GAEV PGDILVGKITPKGESPMTPE Sbjct: 861 MARDTKLGPEDITRDIPNVGEDALRNLDEAGIVYIGAEVQPGDILVGKITPKGESPMTPE 920 Query: 910 EKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLAR 969 EKLLRAIFGEKA DVRDTSLR+P GV+GT+VDVR+FNRHG+DK+ER++++ERE+IE L + Sbjct: 921 EKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERAMAIEREEIERLTK 980 Query: 970 DKDDEQVILDRNIYSRLMEILCGQNAVSGP-KGFKKSTVLSSDLISEYPRSQWWQFAVQD 1028 D++DE+ IL+R Y++L E L GQ + P K K + + ++ +W++FAV+D Sbjct: 981 DREDERAILNRATYAQLQEKLLGQTVAAAPYKHIVKGARIDIETLASVEPHKWFKFAVED 1040 Query: 1029 EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGD 1088 + Q +E++K QY+++ + RF++++EK Q GD++PPGVL++VKVFVA+KR +Q GD Sbjct: 1041 DARQAELEAIKNQYDSADEAIRKRFEDRVEKAQRGDELPPGVLKMVKVFVAVKRKLQPGD 1100 Query: 1089 KMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGL 1148 KMAGRHGNKG++SRILP EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFETHLGWA GL Sbjct: 1101 KMAGRHGNKGVISRILPAEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFETHLGWAARGL 1160 Query: 1149 GKKIKSLINDYKANG---------DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 G K+++ + +++ +R + +V G + E I +D ++ +A Sbjct: 1161 GAKVRTALEEWREANADRYEWDFSPPEVVRERMIEVYGEK-YAEDIKSREDREIVEMAGL 1219 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 ++GVP++TPVFDGA E I+ ML +A LD+SGQ LYDG TGE FDR VTVGYIYMLKL Sbjct: 1220 LRNGVPMATPVFDGAKPEDISEMLNLAGLDDSGQVELYDGRTGEQFDRKVTVGYIYMLKL 1279 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEMLT+KS Sbjct: 1280 HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKS 1339 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 DDVVGRT+VYE+IV G+DTFE G PESFNVLVKEM +LGL+++L+ S+ K+ Sbjct: 1340 DDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMHSLGLNVELKTSKAKDED 1392 >gi|74316416|ref|YP_314156.1| DNA-directed RNA polymerase subunit beta [Thiobacillus denitrificans ATCC 25259] gi|88909645|sp|Q3SLQ6|RPOB_THIDA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|74055911|gb|AAZ96351.1| DNA-directed RNA polymerase, beta subunit [Thiobacillus denitrificans ATCC 25259] Length = 1359 Score = 1685 bits (4363), Expect = 0.0, Method: Composition-based stats. Identities = 720/1363 (52%), Positives = 953/1363 (69%), Gaps = 5/1363 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F + +P L+ Q SY FL + DER NEGLQAAF S+ Sbjct: 1 MAYTFTEKKRLRKSFASRTNTLPVPFLLATQLESYRAFLQEGRSRDERLNEGLQAAFTSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + S A LE+VSY+ P FD+ +C R LTY PL+ +RL++ D +I Sbjct: 61 FPIESHSKNARLEYVSYQLGEPVFDIKECQQRGLTYCAPLRAKVRLVIMDK--EASKPTI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KDI+ R+DRRRK+PVT L ALG E IL F+ K + Sbjct: 179 RVIPYRGSWLDFEFDAKDILFFRVDRRRKMPVTILLKALGYTPESILDAFFNKDTFYINT 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 F L L G + D + ++ K++T+ ++ L GVK + + Sbjct: 239 LGIQFELVPERL-RGEIARFDICGKDD-KVIVAKDKRITAKHIRELDAAGVKKWAVPGEF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A D+V+ +TGE+ A D I E+ L+++ + I LY + +++ A+I TL Sbjct: 297 VVGRVLAHDVVDKDTGELVARANDEITEELLKKLAAAGIDKFQTLYTNDLDHGAFISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD D A + IYR+MRPG+ T ++F LFF ++YDLS VGR+K N R+ Sbjct: 357 RTDDTTDEYAAKVAIYRMMRPGEPPTEDAVNALFVNLFFSDERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + EDI+A+IKILV+LRNG+G IDDID+LGNRRVRSVGE+ +NQ+R GL+R+ Sbjct: 417 DELTGTGTLSTEDIVAVIKILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + D++MP DLINAKPV +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVRERLSQAESDNLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL FAR N YGFIETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARTNWYGFIETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+++ YLSA+EE IAQAN+ LD G F ++LV CR E L ++I+ Sbjct: 597 RKVVDNKVTDEIEYLSAIEESKYVIAQANAELDAKGKFKDDLVSCRFKNEFTLSAPDRIE 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E PFVGTG+E A Sbjct: 657 YMDVAPAQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPFVGTGIERTAAVD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG ++A R G V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRPLV Sbjct: 717 SGTVVIAHRGGRVDYVDAGRIVIRVHDEEARAGEVGVDIYSLIKYTRSNQNTNINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD + R D+IADG STD+G+LALG+NMLVAFMPW+GYNFEDS+LI+E++V+ED +TSI Sbjct: 777 KVGDVIARGDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILINEKVVAEDRYTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GII +GAEV GD+LVGK+TPKG Sbjct: 837 HIEELSVVARDTKLGPEEITRDISNLAERQLARLDESGIIAIGAEVEAGDVLVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSL+VPSG+SG V+DV++F R GI++++R+ S+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLKVPSGMSGVVIDVQVFTREGIERDKRAQSIIDT 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D D I++ + ++RL ++L + GPK K + +S + + R W+ Sbjct: 957 QLAEYKKDLTDRMRIVEDDTFARLEKLLHLKVVNGGPKKLAKGSKISKEYLDSLNRHDWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ R VESLK + + F+ K +K+ GD++PPGV ++VKV++A+KR Sbjct: 1017 DIRLADDEASRQVESLKDSLTQKRVEFDAMFEEKKQKLTAGDELPPGVQKMVKVYLAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMPF+ DG PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1077 RLQPGDKMAGRHGNKGVVSKIVPVEDMPFMADGRPVDIVLNPLGVPSRMNIGQILETHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG+KI ++ + + LR F ++V E I ++ DD +L + + + Sbjct: 1137 WASKGLGEKIGQMM-AAQTKSVVKELRHFFKEVYNQSGKAEDIDNFTDDEILELGQNLQK 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP ++PVFDGA EE I ML +A L E GQ LYDG TGE FDR VTVGY ++LKL+H+ Sbjct: 1196 GVPFASPVFDGATEEEIRRMLALAGLPEGGQVTLYDGRTGEAFDRQVTVGYKHVLKLHHL 1255 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQEMLT+KSDDV Sbjct: 1256 VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDV 1315 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 GRT+VYE+IV G+ E G PESFNVLVKE+++LG+ IDLE Sbjct: 1316 NGRTKVYENIVKGDHKIEAGMPESFNVLVKEIRSLGIDIDLER 1358 >gi|119478600|ref|ZP_01618522.1| DNA-directed RNA polymerase, beta subunit [marine gamma proteobacterium HTCC2143] gi|119448435|gb|EAW29685.1| DNA-directed RNA polymerase, beta subunit [marine gamma proteobacterium HTCC2143] Length = 1358 Score = 1684 bits (4362), Expect = 0.0, Method: Composition-based stats. Identities = 713/1365 (52%), Positives = 987/1365 (72%), Gaps = 8/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK ++D+P L+ +Q SY F + A R + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFGKMSSVMDVPYLLAIQLDSYKKFTQDDTAVGNRADIGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G+A LE+V Y P FDV +C R +TYAVPL++ +RLI++D + AK+I Sbjct: 61 FPIVSYAGSAALEYVDYVLGAPAFDVTECQSRGVTYAVPLRVKVRLIIYDK--ESAAKTI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD+++VRIDRRRK+P T L +LG SEEIL FY ++ Sbjct: 179 RVIPYRGSWLDFEFDPKDMVYVRIDRRRKLPATILLRSLGYSSEEILGMFYESDNFAVNK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + + G + +V G ++ESG+++T+ ++ ++++ +K L + + Sbjct: 239 DGSFNLELIPERLRGEVATFDIVS-KGGTVIVESGRRITARNIRQIEKEKLKTLAVPEEY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A DIV+ +TGEI E + E+ L ++ + ++ I LY + ++ +I +TL Sbjct: 298 ILGRALANDIVDEKTGEILAECNTELTEELLVQLSEAGVKSIATLYTNELDCGPFISDTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++++ +AL++IYR+MRPG+ T AE++F LFF S++YDLSTVGR+K N RL Sbjct: 358 RIDPSRNQLEALVEIYRMMRPGEPPTKESAENLFQNLFFSSERYDLSTVGRMKFNRRLGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DI+ ++K LV +RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 418 EEVLGDGVLSNDDIVDVLKTLVGIRNGKGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQD+INAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLSMAESEGLMPQDMINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNEYGFLESPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV G T D+ YLSA+ E +AQA+++LD+ G +ELV R E + E ++ Sbjct: 598 RKVVKGVATEDIEYLSAINEAEYVVAQASATLDKKGKLIDELVAVRHQNEFTVKAPEDVE 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SPKQVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP LKAE P VGTG+E VA Sbjct: 658 YMDVSPKQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLKAEKPLVGTGIERFVASD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VA+R G+++ VD+ RIV+R + +++ S VDIY L K+ RSNQNTC+NQRP+V Sbjct: 718 SGVCEVARRGGVIDSVDSARIVVRVTDTEVEVGQSPVDIYNLTKYTRSNQNTCINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD +RR DI+ADGPS DLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 778 KEGDAIRRGDILADGPSIDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVKEDRFTTI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG E++T DIPNV E L +D+ GI+ +GAEV GDILVGK+TPKG Sbjct: 838 HIQELTCIARDTKLGSEDVTSDIPNVGEGALGKLDDSGIVYIGAEVAAGDILVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPS V GTV+DV++F R G++K++R++ +E+ Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSSVKGTVIDVQVFTRDGLEKDQRALEIEKS 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D ++E I++ ++ L L GQ VSG G KK T++ ++++ + QW+ Sbjct: 958 QLDEYRKDLNEEFRIVEGATFALLSGSLDGQKVVSG-AGVKKGTIVDNEMLEALEKDQWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D+ + +E+ + Q ++ +E RF++K K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1017 KLRFSDDAINSQLETAETQLTDHRTAIEARFEDKKRKLQSGDDLAPGVLKIVKVYLAIKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ + G PVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1077 RIQPGDKMAGRHGNKGVISVIMPVEDMPYNEQGEPVDIVLNPLGVPSRMNVGQILETHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI +++ + + I+ LR FLE + G E + + D ++ +A + Sbjct: 1137 LAAKGLGEKIDTMLQEQR---KIAELRKFLESIYNGDGGRKEDLKSFTDQEIIEMAGNLR 1193 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++T VFDGA E + ++L +ADL +SGQ LYDG +GE FDR TVGY+YMLKLNH Sbjct: 1194 GGVPMATQVFDGASEAEVKNLLTLADLPDSGQMQLYDGRSGEAFDRETTVGYMYMLKLNH 1253 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1254 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1313 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG++++L+ Sbjct: 1314 VAGRTKMYKNIVDGDQRMEPGMPESFNVLLKEIRSLGINMELDTE 1358 >gi|307823434|ref|ZP_07653663.1| DNA-directed RNA polymerase, beta subunit [Methylobacter tundripaludum SV96] gi|307735419|gb|EFO06267.1| DNA-directed RNA polymerase, beta subunit [Methylobacter tundripaludum SV96] Length = 1364 Score = 1684 bits (4361), Expect = 0.0, Method: Composition-based stats. Identities = 723/1366 (52%), Positives = 972/1366 (71%), Gaps = 4/1366 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+R FGK E++D+P L+ Q SY FL + ++R + GL AAF SV Sbjct: 1 MSYSFTEKKRIRNNFGKGTEVLDVPYLLATQINSYAGFLQSGVTAEKREDSGLHAAFSSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A+LE+V Y P FDV +C R TYA PL++ +RL+++D + AK + Sbjct: 61 FPIESHSGYAVLEYVKYRLGEPVFDVRECQQRGATYAAPLRVLVRLVIYDKEASANAKVV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ +YMG+LPLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLL+ Sbjct: 121 KDIREQEVYMGELPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFNA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L LG D+EE+L F+ ++ Sbjct: 181 RVIPYRGSWLDFEFDHKDCVFVRIDRRRKIPATILLRGLGYDNEEMLKIFFEMNKFTVDA 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 F + M G + + GE ++E G+++T+ ++ + + G+ + + D Sbjct: 241 QKCIFHIVPE-RMRGEIAAFDI-KSKKGEVLVEEGRRITAKHIREMIKSGLTEVEVPKDY 298 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G + ++++ TGE+ D + ++ S I D+ L+V+ ++ Y+ N + Sbjct: 299 LVGKILGHNLIDRSTGELVANVNDELTVAIIDRCIESGITDLNTLFVNDLDKGPYMSNAM 358 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N RL Sbjct: 359 RLDTTTNSLEALVEIYRMMRPGEPPTKDSAENLFQNLFFTDERYDLSTVGRMKFNRRLGR 418 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + K+DII ++K L+D+RNG G +DDID+LGNRRVRSVGEM++NQ+R+GL+R+ Sbjct: 419 QETTGSGTLTKDDIIDVLKELIDIRNGNGNVDDIDHLGNRRVRSVGEMIENQFRVGLVRV 478 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER++ D + +MPQ++INAKPV +AV EFF SSQLSQ + N LS++TH RR+S Sbjct: 479 ERAVKERLTLADSEGLMPQEIINAKPVSAAVKEFFGSSQLSQFMDQNNPLSQVTHKRRVS 538 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+AR RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 539 ALGPGGLARERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNNYGFLETPY 598 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+ V YLSA+EE IAQA+ ++D G E LV CR E L + + Sbjct: 599 RKVIDGKVTDHVDYLSAIEEGEFVIAQASVAVDASGKLVEGLVSCRHKDEFTLAMSDTVQ 658 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S KQ+VS+AAS+IPFLE+DD+NR LMG NMQRQAVP L+AE P VGTGME VAK Sbjct: 659 YMDVSSKQIVSVAASIIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERTVAKD 718 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA R G +E VDA RIV+R + + + T GVDIY L+K+ RSNQNTC+NQ+PLV Sbjct: 719 SGVTVVAARGGKIEAVDAARIVVRVNDTETETGTPGVDIYNLIKYTRSNQNTCINQKPLV 778 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V DI+ADGPSTD+G+LALG+NMLVAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 779 KPGDIVNAGDIMADGPSTDIGELALGQNMLVAFMPWNGYNFEDSILVSERVVKEDRFTTI 838 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE +ARDTK PEEIT DIPNVSEE L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 839 HIEEKTCVARDTKHSPEEITADIPNVSEEALSKLDESGIVYVGAEVKGGDILVGKVTPKG 898 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP + GTV+DV++F R G+ K++R++ +E+E Sbjct: 899 ETQLTPEEKLLRAIFGEKAADVKDTSLRVPGSIEGTVIDVQVFTRDGVKKDKRALDIEQE 958 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +I+ +D DD+ IL+ +I++R+ +L G+ A SGP K T ++ ++ S+W Sbjct: 959 EIKRYRKDLDDQLKILEEDIFARVARLLVGKVAQSGPGQLKAGTEITQAYLNGLKHSEWL 1018 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++DE + +E++ Q E + +++F+ K +KI GDD+ PGVL++VKV++A+KR Sbjct: 1019 KIRMKDEDINLQLETVVTQVEQQRKDFDEKFEVKRKKITMGDDLAPGVLKMVKVYLAVKR 1078 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I P EDMP+ DG PVDIVLNPLGVPSRMNVGQ+ ETHLG Sbjct: 1079 RIQPGDKMAGRHGNKGVISMIRPIEDMPYTADGNPVDIVLNPLGVPSRMNVGQVLETHLG 1138 Query: 1143 WACVGLGKKIKSLINDY--KANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 WA GLG KI ++ ++ +R +L+K+ + H E + + D +L +AE Sbjct: 1139 WAAKGLGIKIGKMLEAKYDAEKAKVTAIREYLDKIYNSSGHKEDLDSFTDQEILEMAENL 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 GVP++TPVFDGA EE I +ML++ADL E GQ LYDGLTGEPF+R VTVGY+YMLKLN Sbjct: 1199 VGGVPMATPVFDGASEEEIRTMLKLADLPEHGQVTLYDGLTGEPFEREVTVGYMYMLKLN 1258 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1259 HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRTR+Y++IV G+ E G PESFNVL+KE+++L ++I+L+ Sbjct: 1319 DVTGRTRMYKNIVDGDHKMEAGMPESFNVLIKEIRSLAVNIELQRD 1364 >gi|121997656|ref|YP_001002443.1| DNA-directed RNA polymerase subunit beta [Halorhodospira halophila SL1] gi|158514012|sp|A1WVC9|RPOB_HALHL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|121589061|gb|ABM61641.1| DNA-directed RNA polymerase subunit beta [Halorhodospira halophila SL1] Length = 1381 Score = 1684 bits (4361), Expect = 0.0, Method: Composition-based stats. Identities = 721/1390 (51%), Positives = 977/1390 (70%), Gaps = 34/1390 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNE-GLQAAFKS 61 F R+RK FGK P I+D+P L+ Q SY FL ++ D R E GL+ AF+S Sbjct: 1 MAYSFTEKKRIRKDFGKLPNILDVPYLLATQVDSYRQFLQDEVSEDARDTEVGLEGAFRS 60 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI + SG A L++VSY P F+V +C R LTYA PL++ +RL ++D + Sbjct: 61 VFPIQSHSGNAELQYVSYRIGDPPFEVKECQSRGLTYAAPLRMLVRLALYDKEGG----G 116 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +KDIKEQ +YMG++PLMT GTFV+ G +R++V+QLHRSPG+ FDHDKG++ SGKLL++ Sbjct: 117 VKDIKEQEVYMGEMPLMTSTGTFVVNGTERVIVNQLHRSPGVFFDHDKGKSHSSGKLLFS 176 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 R+IP +G W+D EFD KD I+VRIDRRRK+P T L ALG EEIL F+ + Sbjct: 177 ARVIPYRGSWLDFEFDPKDTIYVRIDRRRKLPATILLRALGYTPEEILYAFFDTDRFHLG 236 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 + + G S +V GE ++E+G+++T+ +K L++ GV+ L + D Sbjct: 237 SGNKVVLDLVPERLRGETASFDIV--AGGETIVEAGRRVTARHVKQLQKSGVEQLEVPED 294 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G +A D+++ TGEI EA + + + +F + IR+I L+V+ ++ Y+ T Sbjct: 295 YLTGKIIAHDVIDPATGEILAEANTTLTPEITQSLFDAGIREIETLFVNDLDRGPYMSTT 354 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D + + +AL++IYR+MRPG+ T AE++F+ LFF SD+YDLS VGR+K N+R+ Sbjct: 355 LAADATRSQMEALVEIYRMMRPGEPPTKDAAENLFHTLFFTSDRYDLSPVGRMKFNLRVG 414 Query: 422 LDTPDDVRHIRKEDIIA------------------------IIKILVDLRNGKGTIDDID 457 D + A +++ L+D+RNG G +DDID Sbjct: 415 RDEVRGPGILYDGKYFAGLGNADKEADDLIEQYGESSDILDVLRELIDIRNGNGQVDDID 474 Query: 458 NLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFF 517 +LGNRRVRSVGEM +N +R+GL+R+ER++KER+S + + +MPQ+LINAKPV +A+ EFF Sbjct: 475 HLGNRRVRSVGEMAENVFRVGLVRVERAVKERLSLAESEGLMPQELINAKPVAAAIKEFF 534 Query: 518 CSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEG 577 SSQLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG Sbjct: 535 GSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG 594 Query: 578 HNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDED 637 NIGL++SL +AR N YGF+ET YRKV DG+VT+ V YLSA+EE IAQAN+ +DE Sbjct: 595 PNIGLINSLAVYARANRYGFLETAYRKVVDGQVTDQVEYLSAIEESRYVIAQANARVDES 654 Query: 638 GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQ 697 G ++L+ CR E + +++ ++D SP+Q+VS+AASL+PFLE+DD+NR LMG NMQ Sbjct: 655 GYLADDLISCRHQNEFTMATADRVQYMDVSPRQIVSVAASLVPFLEHDDANRALMGANMQ 714 Query: 698 RQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTS 757 RQAVP L+A+ P VGTGME VA+ SG + A+R G+VEQVD+ RIV+R + + P Sbjct: 715 RQAVPTLRADKPLVGTGMERTVARDSGVIVTAERGGVVEQVDSGRIVVRVDDEETTPGEP 774 Query: 758 GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMP 817 GVDIY L K+ RSNQNTC +Q+PLV VGD V R D +ADGPSTD+G+LALG+NMLVAFMP Sbjct: 775 GVDIYSLTKYTRSNQNTCFSQKPLVHVGDRVARGDALADGPSTDMGELALGQNMLVAFMP 834 Query: 818 WHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNID 877 W+GYNFEDS+LISE++V ED +TS+HIEE +ARDTKLG EEIT DIPNVSE L +D Sbjct: 835 WNGYNFEDSILISEKLVKEDRYTSVHIEELTCVARDTKLGSEEITSDIPNVSESALSRLD 894 Query: 878 ECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSG 937 E GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G+ G Sbjct: 895 ESGIVYIGAEVKAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGMDG 954 Query: 938 TVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 TV+DV++F R G++K+ER+ ++ERE+I + +D DDE I + + Y+RL ++L G+ A Sbjct: 955 TVIDVQVFTRDGVEKDERARAIEREEIARVRKDLDDEARIFEDDAYARLEKLLVGKVAEG 1014 Query: 998 GPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKI 1057 GPKG ++ + + PR +W++ ++DE V + +E+++ Q ET + E RF+ K Sbjct: 1015 GPKGLGSGAEVTEAYLQDLPRERWFEIRMRDEAVNQQLEAVRHQLETQRDRFERRFQEKK 1074 Query: 1058 EKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTP 1117 EKI GDD+ PGVL+ VKV +A+KR +Q GDK AGRHGNKG++S I+P EDMP++ DGTP Sbjct: 1075 EKITAGDDLSPGVLKTVKVHLAVKRRLQPGDKFAGRHGNKGVISMIVPEEDMPYMDDGTP 1134 Query: 1118 VDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG 1177 V++VL+PLGVPSRMNVGQ+ ETHLGWA GLG +I ++ + D LR +L ++ Sbjct: 1135 VEVVLSPLGVPSRMNVGQVLETHLGWAARGLGHQIGQML---EQQADAEALRGYLSEIYD 1191 Query: 1178 TGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILY 1237 E++ ++ + + K GVP +TPVFDGA+E I L++A L ESGQ+ LY Sbjct: 1192 ASGRKEELETLSEEELQELCHNLKGGVPAATPVFDGANEGEIKRWLKLAGLPESGQTTLY 1251 Query: 1238 DGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEM 1297 DG TG+ FDRP+TVGY+YMLKLNH+V DKV+AR+TG YSLVTQQPLGGK+ GGQR GEM Sbjct: 1252 DGRTGDAFDRPITVGYMYMLKLNHLVDDKVHARATGPYSLVTQQPLGGKAQFGGQRFGEM 1311 Query: 1298 EVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQAL 1357 EVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV G+ E G PESFNVLVKE+++L Sbjct: 1312 EVWALEAYGAAYTLQEMLTVKSDDVSGRTKMYKNIVDGDHRMEAGMPESFNVLVKEIRSL 1371 Query: 1358 GLSIDLENSR 1367 G++I+LE Sbjct: 1372 GINIELERDD 1381 >gi|254483549|ref|ZP_05096775.1| DNA-directed RNA polymerase, beta subunit [marine gamma proteobacterium HTCC2148] gi|214036206|gb|EEB76887.1| DNA-directed RNA polymerase, beta subunit [marine gamma proteobacterium HTCC2148] Length = 1357 Score = 1684 bits (4361), Expect = 0.0, Method: Composition-based stats. Identities = 723/1365 (52%), Positives = 986/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++D+P L+ +Q SY F +A DER GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFGMLPKVMDVPYLLAIQLDSYRKFTQQGVALDERGAYGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV++C R +TY+ L++ +RLI++D + K+I Sbjct: 61 FPIVSYSGNAALEYVDYALGTPVFDVNECQLRGVTYSCALRVKVRLIIYDK--ESSNKTI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD+++VRIDRRRK+P T L ALG +EEIL F+ + G Sbjct: 179 RVIPYRGSWLDFEFDPKDMVYVRIDRRRKLPATILLRALGYQAEEILEMFFDVNTFHTAG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + + G + + + V+E G+++T+ ++ L++ V L I +D Sbjct: 239 EGNFTMTLIPERLRGDVAAFDIKVGK--KVVVEEGRRITARHIRELEKAKVTELEIPADY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+ +TGE+ +E + E+ L + + ++++ LY + ++ +I +TL Sbjct: 297 LYGRALAKNLVDEKTGEVLVECNTELSEEVLAVLEEAGVKEVQTLYTNELDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++F LFF +D+YDLS VGR+K N RL Sbjct: 357 RQDTTRNELEALVEIYRMMRPGEPPTKESAENLFQNLFFSADRYDLSAVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ ++K L+++RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 417 EEVTGSGVLDKEDIVEVLKTLINIRNGKGIVDDIDHLGNRRVRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNDYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +GKVT+D+ +LSA+ E IAQA+S LD++ FTEEL+ R E + E ++ Sbjct: 597 RKVVNGKVTDDIEFLSAINEAENVIAQASSPLDKNKKFTEELIAVRYLNEFTVKAPEDVN 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SPKQVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L ++ P VGTGME VA Sbjct: 657 YMDVSPKQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLSSDKPLVGTGMERYVASD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA R G+++ VDA RIV+R + D+ + VDIY L K+ RSNQNTC+NQRP+V Sbjct: 717 SGVCVVANRPGVIDSVDASRIVVRVNDKDVGVDEAPVDIYNLTKYTRSNQNTCINQRPIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V R DI+ADGPS D+G+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 777 KQGDAVSRGDILADGPSIDMGELALGQNMRIAFMPWNGYNFEDSILVSERVVKEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEI+ DIPNV E L +DE GI+ +GAEV+ GDILVGK+TPKG Sbjct: 837 HIQELTCIARDTKLGSEEISSDIPNVGESALSKLDESGIVYIGAEVDAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPS GTV+DV++F R G++K++R+ +E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSSTKGTVIDVQVFTRDGLEKDQRAQQIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E I + ++RL ++ ++ VSG G K T L+ ++SE R W+ Sbjct: 957 QLDDYRKDLKEEYRIFEEATFARLSNLIKNKSVVSG-AGLTKGTKLTDKVLSELERELWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++++ + S + Q E ++LE+RF+ K K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLKLSEKELNEALASAQRQLEEQNTLLEERFEIKKGKLQSGDDLAPGVLKIVKVYLAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ ++G PVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISVIMPVEDMPYDENGEPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG-SHTEKISDYDDDSVLRVAEQWK 1201 A GLG KI +I + K ++ +R FLE + G E + D V+ +AE + Sbjct: 1136 MAAKGLGDKINVMIEEQK---KVAEVRKFLEAIYNNGAGRVEDLKSLSDKEVMDLAENLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +L +ADL ESGQ LYDG +GE FDRPVTVGY+YMLKLNH Sbjct: 1193 GGVPMATPVFDGAAESQIKDLLELADLPESGQFTLYDGRSGESFDRPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LE+ Sbjct: 1313 VAGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESE 1357 >gi|66047782|ref|YP_237623.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. syringae B728a] gi|75500409|sp|Q4ZMN7|RPOB_PSEU2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|63258489|gb|AAY39585.1| DNA-directed RNA polymerase, beta subunit [Pseudomonas syringae pv. syringae B728a] Length = 1357 Score = 1684 bits (4360), Expect = 0.0, Method: Composition-based stats. Identities = 718/1365 (52%), Positives = 986/1365 (72%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL D+ + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L FY V+ RG Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E G+++T+ + L++ G+K L + D Sbjct: 239 ENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E ++ + L +I +++ I LY + ++ ++ +TL Sbjct: 297 VLGRTTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N R+ Sbjct: 357 KIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ N LS ITH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMGQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT ++V+LSA+EE + IAQA++++++ +ELV R E + + Sbjct: 597 RVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L G+ A G G KK ++++++ QW+ Sbjct: 957 QLDEIRKDLNEEFRIVEGATFERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + ++ LR FL ++ G E + D D+ +L +A+ + Sbjct: 1136 LAAKGLGEKINRMLEEQR---KVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLR 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH Sbjct: 1193 NGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AY AAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYCAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357 >gi|307295393|ref|ZP_07575232.1| DNA-directed RNA polymerase, beta subunit [Sphingobium chlorophenolicum L-1] gi|306878896|gb|EFN10115.1| DNA-directed RNA polymerase, beta subunit [Sphingobium chlorophenolicum L-1] Length = 1388 Score = 1683 bits (4358), Expect = 0.0, Method: Composition-based stats. Identities = 822/1377 (59%), Positives = 1065/1377 (77%), Gaps = 13/1377 (0%) Query: 4 GVVFNG-LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + G R+RK FG E++ +P+LIEVQ+ SY+ FL + P GL+ +SV Sbjct: 8 TISNTGAKKRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSD--PKIGYVSGLEKTLRSV 65 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+G A ++FV YE + PK+DV++C R +TYA P+++TLRLIVF+VD+ T +S+ Sbjct: 66 FPIRDFAGTAEMDFVHYELEEPKYDVEECRQRGITYAAPMRVTLRLIVFEVDQDTETRSV 125 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 DIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ FDHD+G+ SGK L+A Sbjct: 126 LDIKEQDVYMGDMPLMTGNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFAA 185 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KDI++VRIDR+RK+PVT+ L ALG+ E++L FY K+ + + Sbjct: 186 RVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLTPEDMLGYFYNKVTFVRGE 245 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W P A G K + +VD +GE V +G K++ ++ G++ L I ++ Sbjct: 246 GGWQIPYLAE-AWRGQKPAFDIVDAKSGEVVFAAGHKISPRAANKAEKDGLETLLIPTEE 304 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y A D++N TGEIYIEAGD + ++LE++ + I + +L +D V +IRNTL Sbjct: 305 VYGRYSAYDLINETTGEIYIEAGDEVSPENLEKLDKAGIDRLELLDIDHVTTGPWIRNTL 364 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DK ++R AL DIYRVMRPG+ T AE++F LFFD ++YDLS VGRVK+NMRL+L Sbjct: 365 KADKAEERDQALADIYRVMRPGEPPTKETAEALFGGLFFDPERYDLSAVGRVKLNMRLDL 424 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D D V +R EDI+A++K LV+L++GKG IDDIDNLGNRRVRSVGE+L+NQYR+GLLRM Sbjct: 425 DAEDTVTTLRTEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVGLLRM 484 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 485 ERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVS 544 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +F+RVN YGFIETPY Sbjct: 545 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFIETPY 604 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVTN+VVYLSAMEE IAQAN+ L+ DG+ E+L+ R AGE ++ P++ I Sbjct: 605 RKVIDGKVTNEVVYLSAMEEAKHTIAQANAELNADGTLAEDLISAREAGEFLMAPKDHIT 664 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VA+ Sbjct: 665 LMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGTVARD 724 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGAAI A+RAGI++QVDA RIVIR+ GD++P SGVDIY L KFQRSNQ+TC+NQRPLV Sbjct: 725 SGAAIAARRAGIIDQVDATRIVIRAT-GDIEPGQSGVDIYTLQKFQRSNQDTCINQRPLV 783 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD + D+IADGPST+ G+LALGRN LVAFMPW+GYN+EDS+LISER+V +DVFTSI Sbjct: 784 KVGDLIEAGDVIADGPSTEFGELALGRNTLVAFMPWNGYNYEDSILISERIVKDDVFTSI 843 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFEVMARDTKLGPE+ITRDIPNV EE L+N+DE GI+ +GAEV PGDILVGKITPKG Sbjct: 844 HIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPKG 903 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GTVV+VR+FNRHGIDK+ER++++ERE Sbjct: 904 ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAIERE 963 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +I+ LA+D++DE+ IL+R ++RL E+L GQ A + PKG KK + L++E R +WW Sbjct: 964 EIDRLAKDREDERAILNRATFNRLQEMLLGQVAAAAPKGIKKGVEIDEALLAEVERHEWW 1023 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 +FAV D+ Q +E++K QY+ + ++ ++F+++++K+Q GD++PPGVL++VKVFVA+KR Sbjct: 1024 KFAVADDSRQAGIEAVKAQYDEAVKLIVEKFEDRVDKLQRGDELPPGVLKMVKVFVAVKR 1083 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++SRILP EDMPFL+DGT VDIVLNPLGVPSRMNVGQIFETHLG Sbjct: 1084 KLQPGDKMAGRHGNKGVISRILPIEDMPFLEDGTHVDIVLNPLGVPSRMNVGQIFETHLG 1143 Query: 1143 WACVGLGKKIKSLINDYKANGDISP-------LRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 WA GLG+++K + D++ + +++ L + G + ++I + ++ Sbjct: 1144 WAARGLGQQLKHALEDWREANPNAQGGEMPDAVKTRLLETYG-PQYADQIEGRSAEQIVD 1202 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 +AE GVP++TPVFDGA E +++ML +A L SGQS L+DG TG+ FDR VTVG IY Sbjct: 1203 LAEHLARGVPMATPVFDGAREADVSAMLELAGLHSSGQSDLFDGRTGDRFDRKVTVGIIY 1262 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEML Sbjct: 1263 MLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEML 1322 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 T+KSDDVVGRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L Sbjct: 1323 TVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELAAMDEVEED 1379 >gi|294011000|ref|YP_003544460.1| DNA-directed RNA polymerase subunit beta [Sphingobium japonicum UT26S] gi|292674330|dbj|BAI95848.1| DNA-directed RNA polymerase subunit beta [Sphingobium japonicum UT26S] Length = 1387 Score = 1682 bits (4356), Expect = 0.0, Method: Composition-based stats. Identities = 823/1377 (59%), Positives = 1067/1377 (77%), Gaps = 13/1377 (0%) Query: 4 GVVFNG-LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + G R+RK FG E++ +P+LIEVQ+ SY+ FL + P GL+ +SV Sbjct: 8 TISNTGAKKRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSD--PSIGYVSGLEKTLRSV 65 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+G A ++FV YE + PK+DV++C R +TYA P+++TLRLIVF+VD T +S+ Sbjct: 66 FPIRDFAGTAEMDFVHYELEDPKYDVEECRQRGITYAAPMRVTLRLIVFEVDADTETRSV 125 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 DIKEQ +YMGD+PLMT++GTF++ G +R++VSQ+HRSPG+ FDHD+G+ SGK L+A Sbjct: 126 LDIKEQDVYMGDMPLMTQNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFAA 185 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KDI++VRIDR+RK+PVT+ L ALG+ E++L FY K+ + + Sbjct: 186 RVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLTPEDMLGYFYNKVTFLRGE 245 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W P +A G K + +VD +GE V +G K++ ++ G++ L I ++ Sbjct: 246 GGWQIPYTAE-AWRGQKPAFDIVDAKSGEVVFAAGHKISPRAANKAEKDGLETLLIPTEE 304 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y A D++N TGEIYIEAGD + ++LE++ + I + +L +D V +IRNTL Sbjct: 305 VYGRYSAYDLINEATGEIYIEAGDEVSPENLEKLDKAGIDRLELLDIDHVTTGPWIRNTL 364 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DK ++R AL DIYRVMRPG+ T AE++F LFFD ++YDLS VGRVK+NMRL+L Sbjct: 365 KADKAEERDQALADIYRVMRPGEPPTKETAEALFAGLFFDPERYDLSAVGRVKLNMRLDL 424 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D D V +R EDI+A++K LV+L++GKG IDDIDNLGNRRVRSVGE+L+NQYR+GLLRM Sbjct: 425 DAEDTVTTLRTEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVGLLRM 484 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ E N LS +TH RR+S Sbjct: 485 ERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMEQTNPLSEVTHKRRVS 544 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +F+RVN YGFIETPY Sbjct: 545 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFIETPY 604 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVTN+VVYLSAMEE IAQAN+ L+ DG+ E+L+ R AGE ++ P++ I Sbjct: 605 RKVIDGKVTNEVVYLSAMEEAKHTIAQANAELNADGTLAEDLISAREAGEFLMAPKDHIT 664 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME VA+ Sbjct: 665 LMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGTVARD 724 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGAAI A+RAGI++QVDA RIVIR+ GD++P SGVDIY L KFQRSNQ+TC+NQRPLV Sbjct: 725 SGAAIAARRAGIIDQVDATRIVIRAT-GDIEPGQSGVDIYTLQKFQRSNQDTCINQRPLV 783 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD + D+IADGPST+ G+LALGRN LVAFMPW+GYN+EDS+LISER+V +DVFTSI Sbjct: 784 KVGDLIEAGDVIADGPSTEFGELALGRNTLVAFMPWNGYNYEDSILISERIVKDDVFTSI 843 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFEVMARDTKLGPE+ITRDIPNV EE L+N+DE GI+ +GAEV PGDILVGKITPKG Sbjct: 844 HIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPKG 903 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GTVV+VR+FNRHGIDK+ER++++ERE Sbjct: 904 ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAIERE 963 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +I+ LA+D++DE+ IL+R ++RL E+L GQ A + PKG KK + L++E R +WW Sbjct: 964 EIDRLAKDREDERAILNRATFNRLQEMLIGQTAAAAPKGIKKGVEIDEALLAEVERHEWW 1023 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 +FAV D+ Q +E++K QY+ + ++ ++F+++++K+Q GD++PPGVL++VKVFVA+KR Sbjct: 1024 KFAVADDARQAGIEAVKAQYDEAVKLIVEKFEDRVDKLQRGDELPPGVLKMVKVFVAVKR 1083 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++SRILP EDMPFL+DGT VDIVLNPLGVPSRMNVGQIFETHLG Sbjct: 1084 KLQPGDKMAGRHGNKGVISRILPIEDMPFLEDGTHVDIVLNPLGVPSRMNVGQIFETHLG 1143 Query: 1143 WACVGLGKKIKSLINDYKANGDISP-------LRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 WA GLG+++K + +++ + +++ L + G + ++I + ++ Sbjct: 1144 WAARGLGQQLKHALEEWREANPNAQGGEMPDAVKTRLLETYG-PQYADQIEGRTPEQIVD 1202 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 +AE GVP++TPVFDGA E +++ML +A L SGQS LYDG TG+ FDR VTVG IY Sbjct: 1203 LAEHLSRGVPMATPVFDGAREADVSAMLELAGLHSSGQSDLYDGRTGDKFDRKVTVGIIY 1262 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEML Sbjct: 1263 MLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEML 1322 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 T+KSDDVVGRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L + Sbjct: 1323 TVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELASMDEIEDD 1379 >gi|330993838|ref|ZP_08317770.1| DNA-directed RNA polymerase subunit beta [Gluconacetobacter sp. SXCC-1] gi|329759106|gb|EGG75618.1| DNA-directed RNA polymerase subunit beta [Gluconacetobacter sp. SXCC-1] Length = 1390 Score = 1682 bits (4355), Expect = 0.0, Method: Composition-based stats. Identities = 822/1391 (59%), Positives = 1055/1391 (75%), Gaps = 31/1391 (2%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 A F G R+RK FG PE+ +P+LI+VQ+ASY+ FL MN+APD R GLQ F+S Sbjct: 3 AITKSFTGRKRIRKSFGHIPEVAPMPNLIDVQRASYETFLQMNVAPDSRTPTGLQEVFRS 62 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI F+G LEFVSYE + PK+DV++C+ R LT+A PLK+ LRLIV+DVDE TG++S Sbjct: 63 VFPINDFAGRGRLEFVSYELEEPKYDVEECIQRGLTFAAPLKVILRLIVWDVDEDTGSRS 122 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 I+DIKEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 123 IRDIKEQPVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFA 182 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL-------------------- 221 R+IP +G W+D EFDSKD+I+VRIDR+RK+PVT+ L AL Sbjct: 183 ARVIPYRGSWLDFEFDSKDLIYVRIDRKRKLPVTTLLYALEGAASEAARAAKAAEGGDVE 242 Query: 222 -----GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIES 276 GMD +EIL FY K+ +++ W A G K+ L+D TGE+V + Sbjct: 243 SMEIRGMDPDEILGYFYGKVEFTKTEKGWARRFDAE-AFRGQKLLEPLIDAQTGEEVAPA 301 Query: 277 GKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEI 336 KLT+ +++ + E K + + L G ++A+D+VN TGEIY EAG+ + E+ LEE+ Sbjct: 302 DAKLTARMVRKIAET-TKEVLVGPAGLIGRFIAQDMVNEHTGEIYAEAGEELTEQKLEEL 360 Query: 337 FHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMF 396 + + L +D+ N +IRNTL DKN R++AL DIYRVMRPG+ T AE+MF Sbjct: 361 EGEGLTTLTTLAIDAAN-GPWIRNTLAVDKNAAREEALTDIYRVMRPGEPPTPETAEAMF 419 Query: 397 NFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 + LFFD D+YDLS VGRVKMNMRL +D PD VR +RKEDI+ +KI+ +L++G+G IDDI Sbjct: 420 SGLFFDPDRYDLSAVGRVKMNMRLGVDVPDTVRVLRKEDILRTVKIMCELKDGRGAIDDI 479 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEF 516 DNLGNRRVRSVGE+++NQYR+GLLRMER+I+ER+ SVDID+VMP DLINAKP +AV EF Sbjct: 480 DNLGNRRVRSVGELMENQYRVGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREF 539 Query: 517 FCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSE 576 F SSQLSQ + N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET E Sbjct: 540 FGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPE 599 Query: 577 GHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDE 636 G NIGL++SL ++A+VN YGFIETPYR V DG + + YLSAMEEE +AQA++ D Sbjct: 600 GPNIGLINSLATYAKVNKYGFIETPYRMVHDGVLQDGWKYLSAMEEEKLVVAQADAKQDA 659 Query: 637 DGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNM 696 G T++LV R G+ VP + D SPKQ+VS+AA+LIPFLENDD+NR LMG NM Sbjct: 660 QGHLTDDLVSVRRGGDFRQVPPTDVTACDVSPKQLVSVAAALIPFLENDDANRALMGSNM 719 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPST 756 QRQAVPL++++AP VGTGME+ VA SGAAIVA+R G+V+Q+D RIV+R+ + +T Sbjct: 720 QRQAVPLVRSDAPLVGTGMEAAVAHDSGAAIVARRDGVVDQIDGARIVVRATD--AGGAT 777 Query: 757 SGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 GVDIYRL K+ RSNQ+TC+NQRPLV+VGDEVR +IIADGPST+LG+LALGRN+LVAFM Sbjct: 778 QGVDIYRLRKYMRSNQSTCINQRPLVRVGDEVRAGEIIADGPSTELGELALGRNVLVAFM 837 Query: 817 PWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNI 876 PW+GYNFEDS+LISER+ +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE L+N+ Sbjct: 838 PWNGYNFEDSILISERIARDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNL 897 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 DE GI+ VGAEVNPGDIL+GK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSL++P G + Sbjct: 898 DEAGIVYVGAEVNPGDILIGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGTT 957 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 GT+VDVR+F+R G+DK+ER++++ER +IE LA+D+DDE+ I +R+ Y+RL E L GQ A Sbjct: 958 GTIVDVRVFSRRGVDKDERAMAIERAEIERLAKDRDDERAIQERSFYNRLREHLIGQTAG 1017 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 +G KG + T ++ +++SE+PR W V ++V +E+L+ +++ + S ++ RF NK Sbjct: 1018 AGFKGIRSGTEITDEVLSEHPRGAWRNITVASDEVMAELETLRREFDAAVSKIQARFDNK 1077 Query: 1057 IEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGT 1116 +EK+Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG+VSR++P EDMPFL+DGT Sbjct: 1078 VEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDGT 1137 Query: 1117 PVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI-SPLRSFLEKV 1175 VDIVLNPLGVPSRMNVGQI ETHLGWAC +G+++ L ++Y+ +G+ L L+ V Sbjct: 1138 SVDIVLNPLGVPSRMNVGQILETHLGWACANIGRQVAQLADEYQRHGEKRQELLDELKSV 1197 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 G + E+I D D +L + + GVP++TPVFDGA I +ML A +D+SGQS Sbjct: 1198 YGDKVYEEQIGDMTDAQLLELCGNLRKGVPIATPVFDGASIPDIEAMLTKAGVDKSGQSQ 1257 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 L DG TGEPF+R TVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1258 LIDGRTGEPFERKTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG 1317 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV D FE G PESFNVL+KE++ Sbjct: 1318 EMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVREQDDFEAGIPESFNVLIKELK 1377 Query: 1356 ALGLSIDLENS 1366 +LGL++DLE S Sbjct: 1378 SLGLNVDLEQS 1388 >gi|254294447|ref|YP_003060470.1| DNA-directed RNA polymerase subunit beta [Hirschia baltica ATCC 49814] gi|254042978|gb|ACT59773.1| DNA-directed RNA polymerase, beta subunit [Hirschia baltica ATCC 49814] Length = 1366 Score = 1682 bits (4355), Expect = 0.0, Method: Composition-based stats. Identities = 834/1372 (60%), Positives = 1056/1372 (76%), Gaps = 11/1372 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + F R+RK FG PE I +P+LIE+Q++SY+HFL M+++ ER EGL A F+SV Sbjct: 1 MALSFTAKKRIRKSFGNIPESIQMPNLIEIQRSSYEHFLQMHVSSSEREGEGLDAVFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI FS A LE+VSYEF+PPKFD +C+ RDL YA PLK+ LRLIVF+ DE TGA+SI Sbjct: 61 FPIKDFSDRATLEYVSYEFEPPKFDTQECMQRDLNYAAPLKVKLRLIVFETDEETGARSI 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +Y+GD+PLMT+ GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A Sbjct: 121 KDIKEQDVYLGDIPLMTEKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+HVRIDR+RK+P T+ L ALG D E IL TFY K+ Y Sbjct: 181 RIIPYRGSWLDFEFDAKDIMHVRIDRKRKLPATALLQALGYDHERILDTFYSKVGYRIDK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W S D +V +++ G+ V GKK++ K E GV+ + + S Sbjct: 241 AGWITSFSP-DRWKSVRVEFDILNAADGKVVFNGGKKISPIKAKRAGEAGVEEVLVPSTF 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSV-NNNAYIRNT 361 L G +V EDIVN ETGEI++EAGD + E+S+ E+ + + I +L DS ++RNT Sbjct: 300 LEGKFVGEDIVNMETGEIFVEAGDELTEESIAELRDAGVDMITVLDTDSEAARGPWLRNT 359 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L DK +R +AL DIYRVMRPG+ T +E++FN LFFDS++YDLS VGRVKMNMRL Sbjct: 360 LKVDKASNRTEALSDIYRVMRPGEPPTLEASEALFNQLFFDSERYDLSAVGRVKMNMRLG 419 Query: 422 ---LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 + PD R +R++DI+ ++ ++DL++GKG +DDIDNLGNRRVRS GE+L+N YR+G Sbjct: 420 FTLEEAPDTERTLREDDILGVMSTVLDLKDGKGEVDDIDNLGNRRVRSCGELLENAYRVG 479 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L+RMER+IKER+SSVDID+VMP DL+NAKPV ++V +FF SSQLSQ + N LS ITH Sbjct: 480 LVRMERAIKERMSSVDIDTVMPHDLVNAKPVHASVRDFFGSSQLSQFMDQTNPLSEITHK 539 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + AR+N YGFI Sbjct: 540 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARINKYGFI 599 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E+PYR+V DG + V YLSAMEE IAQAN+++ EDG T E V R AGE LV R Sbjct: 600 ESPYRQVKDGIPQDQVDYLSAMEEYRFKIAQANAAIGEDGKLTNEFVNARVAGEATLVSR 659 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +++D++D SPKQVVS+AA++IPFLENDD+NR LMG NMQRQAVPL+K +AP VGTGME + Sbjct: 660 DEVDYMDVSPKQVVSVAAAMIPFLENDDANRALMGSNMQRQAVPLVKTDAPLVGTGMERI 719 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ S AAIVAKR+G+VEQVDA RIV+R+++G LD + SGVDIYRL KFQRSNQN+C+NQ Sbjct: 720 VARDSRAAIVAKRSGVVEQVDATRIVVRALDG-LDATRSGVDIYRLSKFQRSNQNSCINQ 778 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+VKVGDE+ DIIADGPSTDLGDLALGRN+LVAFMPW GYNFEDS+LISER+V +DV Sbjct: 779 RPIVKVGDEIVAGDIIADGPSTDLGDLALGRNVLVAFMPWSGYNFEDSILISERIVRDDV 838 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFE+ +RDTKLGPEEITRDIPNV EE L+N+DE GII VGAEV GDILVGK+ Sbjct: 839 FTSIHIEEFEIASRDTKLGPEEITRDIPNVGEEALRNLDEAGIIAVGAEVTAGDILVGKV 898 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP G +GT+V+VR+FNRHG+DK++R++ Sbjct: 899 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGDTGTIVEVRVFNRHGVDKDQRALQ 958 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +EREQIE L +DKDDE I++R+ Y RL +L GQ A++GPKGF K +S+D +SE Sbjct: 959 IEREQIEALQKDKDDELAIIERDSYDRLRSLLLGQKAIAGPKGFSKGE-ISTDSLSEVYE 1017 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 + W+ AV+DE +Q ++++K ++S+S++E RF++K++K+Q GDD+PPGV+++VKVF+ Sbjct: 1018 TDMWKIAVEDEGIQTQIDNIKSALDSSRSLIEARFEDKVDKVQRGDDLPPGVMKIVKVFI 1077 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR +Q GDKMAGRHGNKG++SRI P EDMP L+DGTPVDIVLNPLGVPSRMNVGQI E Sbjct: 1078 AVKRKLQPGDKMAGRHGNKGVISRINPLEDMPHLEDGTPVDIVLNPLGVPSRMNVGQILE 1137 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC GLG+ I + +Y + DI L+ L G + ++ ++ +A Sbjct: 1138 THLGWACSGLGRMIDDSLKEYHRDHDIVKLKDQLAHCYGDNQELPE----KEEELVELAG 1193 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K G+P++TPVFDGA E I+ ML A D SGQS +YDG TGE F R VTVGY Y+LK Sbjct: 1194 NLKKGIPIATPVFDGASSEQIDEMLTRAGFDTSGQSTVYDGRTGERFARKVTVGYKYLLK 1253 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1254 LHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1313 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 SDD GR +VYESIV G+D+FE G PESFNVL+KEM++LGL+++L + Sbjct: 1314 SDDTAGRAKVYESIVRGDDSFEAGIPESFNVLIKEMRSLGLNVELLEAEDPE 1365 >gi|148361060|ref|YP_001252267.1| DNA-directed RNA polymerase subunit beta [Legionella pneumophila str. Corby] gi|41017593|sp|O86094|RPOB_LEGPN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166229295|sp|A5IHS1|RPOB_LEGPC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|3549149|gb|AAC69338.1| RNA polymerase B-subunit [Legionella pneumophila] gi|148282833|gb|ABQ56921.1| DNA-directed RNA polymerase beta subunit [Legionella pneumophila str. Corby] Length = 1368 Score = 1681 bits (4352), Expect = 0.0, Method: Composition-based stats. Identities = 726/1364 (53%), Positives = 996/1364 (73%), Gaps = 5/1364 (0%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 R RK FGK +I+ IP+L+E+Q SY FL + E+ N GL AAF SVF Sbjct: 9 QYSHAEKKRFRKSFGKQTDIMPIPNLLEIQLKSYRDFLQTDTKLSEQLNTGLHAAFSSVF 68 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI +FSG A LE+V Y+ P FDV +C R LTY+ PL++ +RL+V D D K IK Sbjct: 69 PIESFSGNARLEYVGYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVLDKDASDDPKPIK 128 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 DI+EQ ++MG++PLMT GTFV+ G +R+VVSQLHRSPG+ F+HDKG+ SGKLLY+ R Sbjct: 129 DIREQDVFMGEIPLMTDVGTFVVNGTERVVVSQLHRSPGVIFEHDKGKTHSSGKLLYSAR 188 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD ++VRIDRRRK+PVT L ALG ++E+ILS F+ + Sbjct: 189 IIPYRGSWLDFEFDPKDCVYVRIDRRRKLPVTILLRALGYEAEDILSEFFETTRCHLKNG 248 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + L L G S + +TGE ++E G+++T+ +K +++ ++ L + D L Sbjct: 249 EYHIDLIPQRL-RGEIASFDIHVPETGELIVEQGRRITARHIKQMEKSQMQDLVVPRDYL 307 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +A++I++ TGE +A D I E+ L+ + + I I ++Y + +++ +YI +TL Sbjct: 308 IGKTLAKNIIDTSTGEFLAQANDEITEELLDAMANHGILQIDMIYTNDLDHGSYISDTLK 367 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D + +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N R+ + Sbjct: 368 IDPTGSQLEALVEIYRMMRPGEPPTKEAAEALFKNLFFVEERYDLSAVGRMKFNRRVGIK 427 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 + + + KEDI+++IK L+D+RNG G +DDID+LGNRRVRSVGEM +NQ+R+GL+R+E Sbjct: 428 SDEGPGTLTKEDILSVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFRVGLVRVE 487 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R++KER+S V+ +++MPQDLINAKPV +A+ EFF SSQLSQ + VN LS +TH RR+SA Sbjct: 488 RAVKERLSLVESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVTHKRRVSA 547 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGFIETP R Sbjct: 548 LGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFIETPCR 607 Query: 604 KVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 KV +G+VT++V YLSA+EE ++YIAQ+N LD G+ +LV CR E L +KI++ Sbjct: 608 KVVNGRVTDEVEYLSAIEEVDQYIAQSNVELDAQGNILADLVPCRHQNEFSLTTPDKINY 667 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME +VA S Sbjct: 668 MDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERIVASDS 727 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 G ++VAKR G+++ VDA RIV+R + + +GVDIY L K+ RSNQ+TC+NQRP+V Sbjct: 728 GVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCINQRPIVS 787 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 GD ++R D++ADGP TD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V +D FT+IH Sbjct: 788 TGDRIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHDDRFTTIH 847 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 IEE +ARDTKLG EEIT DIPNV E L N+DE G++ +GAEV GDILVGK+TPKGE Sbjct: 848 IEELTCIARDTKLGTEEITADIPNVGESALSNLDESGVVYIGAEVKAGDILVGKVTPKGE 907 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 + +TPEEKLLRAIFGEKA DV+D+SLRVPSG++GTV+DV++F R G++K+ R+ S+E E Sbjct: 908 TQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARAKSIEEEH 967 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 + + +D DE+ I + +IY R+ +L + A GP K + ++ D + + R +W+ Sbjct: 968 LARVRKDLIDERRIREEDIYHRVSHLLLDKVATGGPGSLKPGSKITQDYLDKVEREKWFD 1027 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 ++D+ V + +E L Q E +E RF + +KI GDD+ PGVL++VKV++A+KR Sbjct: 1028 IRIEDDAVSQQLEQLSKQLELLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKVYLAVKRR 1087 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 IQ GDKMAGRHGNKG++S ++P EDMP ++DGT VDIVLNPLGVPSRMN+GQ+ ETHLG Sbjct: 1088 IQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQVLETHLGL 1147 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG+KI ++++ + I +++LEK+ G + +DD ++ +A+ ++ Sbjct: 1148 AAKGLGRKIAQMLDERQTPEAI---KAYLEKIYNHDGVQRVNLKCLNDDELMTLADNLRA 1204 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E+ I SML++ADL G+++L DG TG FD PVTVGY+YMLKLNH+ Sbjct: 1205 GVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNPVTVGYMYMLKLNHL 1264 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1265 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1324 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ + G PESFNVL+KE++ALG+ I+LE+ Sbjct: 1325 GGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELEHD 1368 >gi|148260945|ref|YP_001235072.1| DNA-directed RNA polymerase subunit beta [Acidiphilium cryptum JF-5] gi|326404343|ref|YP_004284425.1| DNA-directed RNA polymerase subunit beta [Acidiphilium multivorum AIU301] gi|166229283|sp|A5FZX1|RPOB_ACICJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|146402626|gb|ABQ31153.1| DNA-directed RNA polymerase subunit beta [Acidiphilium cryptum JF-5] gi|325051205|dbj|BAJ81543.1| DNA-directed RNA polymerase subunit beta [Acidiphilium multivorum AIU301] Length = 1400 Score = 1680 bits (4351), Expect = 0.0, Method: Composition-based stats. Identities = 821/1390 (59%), Positives = 1049/1390 (75%), Gaps = 34/1390 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 V F R+RK FG+ PE +P+LI+VQ+ASYD FL M+++PD R N GLQ FKSVF Sbjct: 10 KVSFTNRKRIRKSFGRIPETTPMPNLIDVQRASYDAFLQMHVSPDSRTNSGLQEVFKSVF 69 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI F+G LEFV YE + PK+DV++C+ R +TYA PLK+ LRLIV+DVDE TGA+SI+ Sbjct: 70 PIDDFAGRGRLEFVYYELEEPKYDVEECIQRGMTYAAPLKVVLRLIVWDVDEDTGARSIR 129 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 DIKEQ +YMGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A R Sbjct: 130 DIKEQPVYMGDMPLMTDNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAAR 189 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL---------------------- 221 +IP +G W+D EFD+KD+I+VRIDR+RK+PVT+ L AL Sbjct: 190 VIPYRGSWLDFEFDAKDLIYVRIDRKRKLPVTTLLYALEGRATEALRAAREAKGESLEIG 249 Query: 222 ---GMDSEEILSTFYPKIVYSQR----GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVI 274 GMD+EEIL+ FY K+ +++ G+ + GAK+ LVD +TGE V Sbjct: 250 EIRGMDAEEILTYFYGKVPFTRTRTRDGETAWARPFEPETFRGAKLVEDLVDAETGEVVA 309 Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLE 334 ++ KLT+ + + + K + ++ L G YVAED+ + TGEI+ +AG+ I E L+ Sbjct: 310 KADDKLTARVARQIAVKTRT-VLVSRADLIGRYVAEDLFDPNTGEIFADAGEEISEAKLK 368 Query: 335 EIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAES 394 + + +IP L +D +IRNTL DKN R+DAL+DIYRV+RPG+ T AE+ Sbjct: 369 TFEDAGLDEIPTLAIDQA-KGPWIRNTLAADKNASREDALIDIYRVIRPGEPPTSETAEA 427 Query: 395 MFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTID 454 +F LFFD+++YDLS VGRVKMNMRL L+ D VR +RKEDI+ I+I+ +L++G+G +D Sbjct: 428 LFRGLFFDAERYDLSAVGRVKMNMRLGLECEDTVRVLRKEDILRTIQIMCELKDGRGQVD 487 Query: 455 DIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVC 514 DIDNLGNRRVRSVGE+++NQYR+GLLRMER+I+ER+ SVDID VMP DLINAKP +AV Sbjct: 488 DIDNLGNRRVRSVGELMENQYRIGLLRMERAIRERMGSVDIDGVMPHDLINAKPAAAAVR 547 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 EFF SSQLSQ + N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET Sbjct: 548 EFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIET 607 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSL 634 EG NIGL++SL +FA+VN YGFIETPYR V DGKV ++ YLSAMEEE +AQA++ Sbjct: 608 PEGPNIGLINSLATFAKVNKYGFIETPYRLVKDGKVLDEYKYLSAMEEERLTVAQADAPK 667 Query: 635 DEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 DG+ TE+LV R G+ LV +++ ID SP+Q+VS+AA+LIPFLENDD+NR LMG Sbjct: 668 LADGTLTEDLVSVRRNGDFRLVKPDEVTAIDVSPRQLVSVAAALIPFLENDDANRALMGS 727 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDP 754 NMQRQAVPL+K++AP VGTGME+ VA+ SGA IVA+RAG+++Q+D RIV+R+ D Sbjct: 728 NMQRQAVPLIKSDAPLVGTGMEAPVARDSGATIVARRAGVIDQIDGARIVVRATGE--DG 785 Query: 755 STSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVA 814 +T GVDIYRL KF RSNQ+TC+NQRPLV+VGD V DIIADGPST+LG+LALGRN+L A Sbjct: 786 TTQGVDIYRLRKFMRSNQSTCINQRPLVRVGDRVGAGDIIADGPSTELGELALGRNVLCA 845 Query: 815 FMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLK 874 FMPW+GYNFEDS+LISER+ ED+FTSIHIEEFEVMARDTKLG EEITRDIPNV EE L+ Sbjct: 846 FMPWNGYNFEDSILISERVAREDMFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALR 905 Query: 875 NIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSG 934 N+DE GI+ +GAEVNPGDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSL++P G Sbjct: 906 NLDEAGIVYIGAEVNPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPG 965 Query: 935 VSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 V+GTVVDVR+FNR G+DK+ER++++ER +IE LA+D+DDE+ I +R +RL E L GQ Sbjct: 966 VNGTVVDVRVFNRRGVDKDERALAIERAEIERLAKDRDDERAIQERAFLNRLREKLLGQV 1025 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 A SG KG + T ++++L++E PR W VQD++V +E+LK +++ S L+ RF+ Sbjct: 1026 AGSGYKGVRSGTEITTELLAEIPRGAWRNLTVQDDRVMAEIETLKREFDASVHKLQQRFE 1085 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 +K+EK+Q GD+MPPGV+++VKVF+A+KR +Q GDKMAGRHGNKG+VS+++P EDMPFL+D Sbjct: 1086 SKVEKLQRGDEMPPGVMKMVKVFIAVKRKLQPGDKMAGRHGNKGVVSKVVPIEDMPFLED 1145 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY-KANGDISPLRSFLE 1173 GTPVD+VLNPLGVPSRMNVGQI ETHLGWAC LG++I + Y + + L + L+ Sbjct: 1146 GTPVDVVLNPLGVPSRMNVGQILETHLGWACANLGRQIGEAVEAYQRDVAERERLHAMLK 1205 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 V G + E+I+ D + + + GVP++TPVFDGA I ML A LD SGQ Sbjct: 1206 SVYGEEIYNEQIASMSDAELRELCGNIRKGVPIATPVFDGARITDIEDMLAKAGLDVSGQ 1265 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 + DG TGE F+R VTVGY+YMLKL HMV DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1266 MTVCDGRTGEQFERKVTVGYMYMLKLGHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQR 1325 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV D FE G PESFNVL KE Sbjct: 1326 FGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVREQDNFEAGVPESFNVLTKE 1385 Query: 1354 MQALGLSIDL 1363 +++LGL++DL Sbjct: 1386 LKSLGLNVDL 1395 >gi|300114743|ref|YP_003761318.1| DNA-directed RNA polymerase subunit beta [Nitrosococcus watsonii C-113] gi|300114755|ref|YP_003761330.1| DNA-directed RNA polymerase subunit beta [Nitrosococcus watsonii C-113] gi|299540680|gb|ADJ28997.1| DNA-directed RNA polymerase, beta subunit [Nitrosococcus watsonii C-113] gi|299540692|gb|ADJ29009.1| DNA-directed RNA polymerase, beta subunit [Nitrosococcus watsonii C-113] Length = 1359 Score = 1680 bits (4351), Expect = 0.0, Method: Composition-based stats. Identities = 719/1364 (52%), Positives = 987/1364 (72%), Gaps = 5/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 R+RK FGK I+ P L+ +Q S+ FL M++ P +R ++GL AAFKSV Sbjct: 1 MPYSLTEKKRIRKDFGKLHSILKTPFLLTIQIGSFLDFLQMDVPPGKRKDKGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++ A L++ SY P F+V +C R LTYA PL++ LRL+++D + + + Sbjct: 61 FPIKSYTEYAELQYSSYHLGVPSFEVKECQVRGLTYAAPLRVKLRLVIYDKESPASEQVV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD+KEQ +YMG++PLMT G FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 KDVKEQEVYMGEIPLMTPKGNFVINGTERVIVSQLHRSPGVIFEHDKGKTHSSGKLLFSA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD I+ RIDRRRK+ T L ALG +EEIL F+ I ++G Sbjct: 181 RIIPYRGSWLDFEFDPKDCIYARIDRRRKLLATILLRALGYSTEEILIMFFETISVKRQG 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + D GE ++E+G+++T+ +K +++ G+K L + + Sbjct: 241 SSYLLDLVPQRL-RGESLPFDIASPD-GEVIVEAGRRVTARHIKQMEKAGMKTLSVPKEF 298 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G + D+++ TGE+ +A D I + L I +++I+ ++Y + ++ ++I ++L Sbjct: 299 LIGKILTRDLIDTGTGEVLAKANDEITAELLAVIENTDIQAFDLIYTNDLDRGSFISDSL 358 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +A ++IYRVMRPG+ T A+++F LFF+ ++YDLS VGR+K N RL Sbjct: 359 RLDPTTTPLEAQMEIYRVMRPGEPPTKEAAQNLFQNLFFNPERYDLSPVGRMKFNRRLGK 418 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ +IK LVD+RNG G++DD+D+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 419 EDITGPSILSKEDIVDVIKTLVDIRNGYGSVDDVDHLGNRRVRSVGEMAENQFRVGLVRV 478 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + + +MPQ+LINAKPV +A+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 479 ERAVRERLSLAESEGLMPQELINAKPVSAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 538 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGFIETPY Sbjct: 539 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARINQYGFIETPY 598 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG+VT +V YLSA+EE IAQAN++ DE+G + LV CR E L+P EK+ Sbjct: 599 RKVVDGRVTAEVDYLSAIEEGQYVIAQANAAADEEGRLIDMLVSCRHKNEFTLLPPEKVQ 658 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +ID SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+AE P VGTGME VA+ Sbjct: 659 YIDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAETPLVGTGMEQFVARD 718 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA+R GIV+ VDA R+V+R + + GVDIY L+K+ RSNQNTC+NQ PLV Sbjct: 719 SGVMVVARRGGIVDSVDAARVVVRVNDEETASDEPGVDIYNLIKYARSNQNTCINQSPLV 778 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V D++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V ED FTSI Sbjct: 779 KPGDTVAIGDVLADGPSTDMGELALGQNLLVAFMPWNGYNFEDSILISERVVEEDRFTSI 838 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE ARDTKLGPEEI+ DIPNVSE L +DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 839 HIEELTCFARDTKLGPEEISSDIPNVSEAALSKLDEAGIVYIGAEVKPGDILVGKVTPKG 898 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRV SG+ GTV+DV++F R G++K+ R++ +E Sbjct: 899 ETQLTPEEKLLRAIFGEKASDVKDTSLRVSSGMQGTVIDVQVFTRDGVEKDARALEIEEM 958 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ + +D DE I++ +IY RL ++L G+ GP K T ++ +++ PR +W+ Sbjct: 959 ELAKIKKDLRDEFRIVETDIYQRLEKVLVGKTVEGGPAELKAGTQITQSYLADLPRERWF 1018 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++ E+ + +ES+ Q + + ++++F+ + K+ G D+PPGV ++VKV++A+KR Sbjct: 1019 EIRLRSEEAGKQLESVAGQLKEQRIAMDEKFQQQRAKLTSGHDLPPGVQKMVKVYLAVKR 1078 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++S I+P EDMP+++DGTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1079 RVQPGDKMAGRHGNKGVISTIVPIEDMPYMEDGTPVDIVLNPLGVPSRMNIGQILETHLG 1138 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG+KI +L++ + +S LR FL+++ E ++ D VL +A Sbjct: 1139 WAAKGLGRKIGALLD---SGQQVSELRVFLDRIYNASGKREDLNSLSDKEVLELANNLSD 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E+ I +ML +ADL +GQ+ LYDG +G+ F RP+TVGY++MLKLNH+ Sbjct: 1196 GVPMATPVFDGASEQEIKAMLELADLPINGQTNLYDGRSGKAFARPITVGYMHMLKLNHL 1255 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW +++YGAAY LQEMLT+KSDDV Sbjct: 1256 VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALESYGAAYTLQEMLTVKSDDV 1315 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL KE++ALG+ I+LE Sbjct: 1316 SGRTKMYKNIVDGDYRMEAGMPESFNVLTKEIRALGIDIELEQD 1359 >gi|52840567|ref|YP_094366.1| DNA-directed RNA polymerase subunit beta [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81378217|sp|Q5ZYQ0|RPOB_LEGPH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|52627678|gb|AAU26419.1| DNA-directed RNA polymerase beta subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 1368 Score = 1680 bits (4351), Expect = 0.0, Method: Composition-based stats. Identities = 725/1364 (53%), Positives = 996/1364 (73%), Gaps = 5/1364 (0%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 R RK FGK +I+ IP+L+E+Q SY FL + E+ N GL AAF SVF Sbjct: 9 QYSHAEKKRFRKSFGKQTDIMPIPNLLEIQLKSYRDFLQTDTKLSEQLNTGLHAAFSSVF 68 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI +FSG A LE+V Y+ P FDV +C R LTY+ PL++ +RL+V D D K IK Sbjct: 69 PIESFSGNARLEYVGYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVLDKDASDDPKPIK 128 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 DI+EQ ++MG++PLMT GTFV+ G +R+VVSQLHRSPG+ F+HDKG+ SGKLLY+ R Sbjct: 129 DIREQDVFMGEIPLMTDVGTFVVNGTERVVVSQLHRSPGVIFEHDKGKTHSSGKLLYSAR 188 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD ++VRIDRRRK+PVT L ALG ++E+ILS F+ + Sbjct: 189 IIPYRGSWLDFEFDPKDCVYVRIDRRRKLPVTILLRALGYEAEDILSEFFETTHCHLKNG 248 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + L L G S + +TGE ++E G+++T+ +K +++ ++ L + D L Sbjct: 249 EYHIDLIPQRL-RGEIASFDIHVPETGELIVEQGRRITARHIKQMEKSQMQDLVVPRDYL 307 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +A++I++ TGE +A D I E+ L+ + + I I ++Y + +++ +YI +TL Sbjct: 308 IGKTLAKNIIDTSTGEFLAQANDEITEELLDAMANHGILQIDMIYTNDLDHGSYISDTLK 367 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D + +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N R+ + Sbjct: 368 IDPTGSQLEALVEIYRMMRPGEPPTKEAAEALFKNLFFVEERYDLSAVGRMKFNRRVGIK 427 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 + + + KEDI+++IK L+D+RNG G +DDID+LGNRRVRSVGEM +NQ+R+GL+R+E Sbjct: 428 SDEGPGTLTKEDILSVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFRVGLVRVE 487 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R++KER+S V+ +++MPQDLINAKPV +A+ EFF SSQLSQ + VN LS +TH RR+SA Sbjct: 488 RAVKERLSLVESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVTHKRRVSA 547 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGFIETP R Sbjct: 548 LGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFIETPCR 607 Query: 604 KVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 KV +G+VT++V YLSA+EE ++YIAQ+N LD G+ +LV CR E L +KI++ Sbjct: 608 KVVNGRVTDEVEYLSAIEEVDQYIAQSNVELDAQGNILADLVPCRHQNEFSLTTPDKINY 667 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME +VA S Sbjct: 668 MDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERIVASDS 727 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 G ++VAKR G+++ VDA RIV+R + + +GVDIY L K+ RSNQ+TC+NQRP+V Sbjct: 728 GVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCINQRPIVS 787 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 GD ++R D++ADGP TD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V +D FT+IH Sbjct: 788 TGDRIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHDDRFTTIH 847 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 IEE +ARDTKLG EEIT DIPNV E L N+DE G++ +GAEV GDILVGK+TPKGE Sbjct: 848 IEELTCIARDTKLGTEEITADIPNVGESALSNLDESGVVYIGAEVKAGDILVGKVTPKGE 907 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 + +TPEEKLLRAIFGEKA DV+D+SLRVPSG++GTV+DV++F R G++K+ R+ S+E E Sbjct: 908 TQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARAKSIEEEH 967 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 + + +D DE+ I + +IY R+ +L + A GP K + ++ D + + R +W+ Sbjct: 968 LARVRKDLIDERRIREEDIYHRVSHLLLDKVATGGPGSLKPGSKITQDYLDKVEREKWFD 1027 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 ++D+ + + +E L Q E +E RF + +KI GDD+ PGVL++VKV++A+KR Sbjct: 1028 IRIEDDAISQQLEQLSKQLELLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKVYLAVKRR 1087 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 IQ GDKMAGRHGNKG++S ++P EDMP ++DGT VDIVLNPLGVPSRMN+GQ+ ETHLG Sbjct: 1088 IQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQVLETHLGL 1147 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG+KI ++++ + I +++LEK+ G + +DD ++ +A+ ++ Sbjct: 1148 AAKGLGRKIAQMLDEKQTPEAI---KAYLEKIYNHDGVQRVNLKCLNDDELMTLADNLRA 1204 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E+ I SML++ADL G+++L DG TG FD PVTVGY+YMLKLNH+ Sbjct: 1205 GVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNPVTVGYMYMLKLNHL 1264 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1265 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1324 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ + G PESFNVL+KE++ALG+ I+LE+ Sbjct: 1325 GGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELEHD 1368 >gi|54293314|ref|YP_125729.1| DNA-directed RNA polymerase subunit beta [Legionella pneumophila str. Lens] gi|81369318|sp|Q5WZL9|RPOB_LEGPL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|53753146|emb|CAH14593.1| RNA polymerase B-subunit [Legionella pneumophila str. Lens] gi|307609131|emb|CBW98577.1| RNA polymerase B-subunit [Legionella pneumophila 130b] Length = 1368 Score = 1680 bits (4351), Expect = 0.0, Method: Composition-based stats. Identities = 724/1364 (53%), Positives = 995/1364 (72%), Gaps = 5/1364 (0%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 R RK FGK +I+ IP+L+E+Q SY FL + E+ N GL AAF SVF Sbjct: 9 QYSHAEKKRFRKSFGKQTDIMPIPNLLEIQLKSYRDFLQTDTKLSEQLNTGLHAAFSSVF 68 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI +FSG A LE+V Y+ P FDV +C R LTY+ PL++ +RL+V D D K IK Sbjct: 69 PIESFSGNARLEYVGYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVLDKDASDDPKPIK 128 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 DI+EQ ++MG++PLMT GTFV+ G +R+VVSQLHRSPG+ F+HDKG+ SGKLLY+ R Sbjct: 129 DIREQDVFMGEIPLMTDVGTFVVNGTERVVVSQLHRSPGVIFEHDKGKTHSSGKLLYSAR 188 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD ++VRIDRRRK+PVT L ALG ++E+IL+ F+ + Sbjct: 189 IIPYRGSWLDFEFDPKDCVYVRIDRRRKLPVTILLRALGYEAEDILNEFFETTCCHLKNG 248 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + L L G S + +TGE ++E G+++T+ +K +++ ++ L + D L Sbjct: 249 EYHIDLIPQRL-RGEIASFDIHVPETGELIVEQGRRITARHIKQMEKSQMQDLVVPRDYL 307 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +A++I++ TGE +A D I E+ L+ + I I ++Y + +++ +YI +TL Sbjct: 308 IGKTLAKNIIDTSTGEFLAQANDEITEELLDAMASHGILQIDMIYTNDLDHGSYISDTLK 367 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D + +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N R+ + Sbjct: 368 IDPTGSQLEALVEIYRMMRPGEPPTKEAAEALFKNLFFVEERYDLSAVGRMKFNRRVGIK 427 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 + + + KEDI+++IK L+D+RNG G +DDID+LGNRRVRSVGEM +NQ+R+GL+R+E Sbjct: 428 SDEGPGTLTKEDILSVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFRVGLVRVE 487 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R++KER+S V+ +++MPQDLINAKPV +A+ EFF SSQLSQ + VN LS +TH RR+SA Sbjct: 488 RAVKERLSLVESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVTHKRRVSA 547 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGFIETP R Sbjct: 548 LGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFIETPCR 607 Query: 604 KVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 KV +G+VT++V YLSA+EE ++YIAQ+N LD G+ +LV CR E L +KI++ Sbjct: 608 KVVNGRVTDEVEYLSAIEEVDQYIAQSNVELDAQGNILADLVPCRHQNEFSLTTPDKINY 667 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME +VA S Sbjct: 668 MDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERIVASDS 727 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 G ++VAKR G+++ VDA RIV+R + + +GVDIY L K+ RSNQ+TC+NQRP+V Sbjct: 728 GVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCINQRPIVS 787 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 GD ++R D++ADGP TD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V +D FT+IH Sbjct: 788 TGDRIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHDDRFTTIH 847 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 IEE +ARDTKLG EEIT DIPNV E L N+DE G++ +GAEV GDILVGK+TPKGE Sbjct: 848 IEELTCIARDTKLGTEEITADIPNVGESALSNLDESGVVYIGAEVKAGDILVGKVTPKGE 907 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 + +TPEEKLLRAIFGEKA DV+D+SLRVPSG++GTV+DV++F R G++K+ R+ S+E E Sbjct: 908 TQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARAKSIEEEH 967 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 + + +D DE+ I + +IY R+ +L + A GP K + ++ D + + R +W+ Sbjct: 968 LARVRKDLIDERRIREEDIYHRVSHLLLDKVATGGPGSLKPGSKITQDYLDKVEREKWFD 1027 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 ++D+ + + +E L Q E +E RF + +KI GDD+ PGVL++VKV++A+KR Sbjct: 1028 IRIEDDAISQQLEQLSKQLELLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKVYLAVKRR 1087 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 IQ GDKMAGRHGNKG++S ++P EDMP ++DGT VDIVLNPLGVPSRMN+GQ+ ETHLG Sbjct: 1088 IQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQVLETHLGL 1147 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG+KI ++++ + I +++LEK+ G + +DD ++ +A+ ++ Sbjct: 1148 AAKGLGRKIAQMLDEKQTPEAI---KAYLEKIYNHDGVQRVNLKCLNDDELMTLADNLRA 1204 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E+ I SML++ADL G+++L DG TG FD PVTVGY+YMLKLNH+ Sbjct: 1205 GVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNPVTVGYMYMLKLNHL 1264 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1265 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1324 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ + G PESFNVL+KE++ALG+ I+LE+ Sbjct: 1325 GGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELEHD 1368 >gi|296105871|ref|YP_003617571.1| DNA-directed RNA polymerase subunit beta [Legionella pneumophila 2300/99 Alcoy] gi|295647772|gb|ADG23619.1| DNA-directed RNA polymerase subunit beta [Legionella pneumophila 2300/99 Alcoy] Length = 1368 Score = 1680 bits (4351), Expect = 0.0, Method: Composition-based stats. Identities = 726/1364 (53%), Positives = 996/1364 (73%), Gaps = 5/1364 (0%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 R RK FGK +I+ IP+L+E+Q SY FL + E+ N GL AAF SVF Sbjct: 9 QYSHAEKKRFRKSFGKQTDIMPIPNLLEIQLKSYRDFLQTDTKLSEQLNTGLHAAFSSVF 68 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI +FSG A LE+V Y+ P FDV +C R LTY+ PL++ +RL+V D D K IK Sbjct: 69 PIESFSGNARLEYVGYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVLDKDASDDPKPIK 128 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 DI+EQ ++MG++PLMT GTFV+ G +R+VVSQLHRSPG+ F+HDKG+ SGKLLY+ R Sbjct: 129 DIREQDVFMGEIPLMTDVGTFVVNGTERVVVSQLHRSPGVIFEHDKGKTHSSGKLLYSAR 188 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD ++VRIDRRRK+PVT L ALG ++E+ILS F+ + Sbjct: 189 IIPYRGSWLDFEFDPKDCVYVRIDRRRKLPVTILLRALGYEAEDILSEFFETTRCHLKNG 248 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + L L G S + +TGE ++E G+++T+ +K +++ ++ L + D L Sbjct: 249 EYHIDLIPQRL-RGEIASFDIHVPETGELIVEQGRRITARHIKQMEKSQMQDLVVPRDYL 307 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +A++I++ TGE +A D I E+ L+ + + I I ++Y + +++ +YI +TL Sbjct: 308 TGKTLAKNIIDTSTGEFLAQANDEITEELLDAMANHGILQIDMIYTNDLDHGSYISDTLK 367 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D + +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N R+ + Sbjct: 368 IDPTGSQLEALVEIYRMMRPGEPPTKEAAEALFKNLFFVEERYDLSAVGRMKFNRRVGIK 427 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 + + + KEDI+++IK L+D+RNG G +DDID+LGNRRVRSVGEM +NQ+R+GL+R+E Sbjct: 428 SDEGPGTLTKEDILSVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFRVGLVRVE 487 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R++KER+S V+ +++MPQDLINAKPV +A+ EFF SSQLSQ + VN LS +TH RR+SA Sbjct: 488 RAVKERLSLVESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVTHKRRVSA 547 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGFIETP R Sbjct: 548 LGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFIETPCR 607 Query: 604 KVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 KV +G+VT++V YLSA+EE ++YIAQ+N LD G+ +LV CR E L +KI++ Sbjct: 608 KVVNGRVTDEVEYLSAIEEVDQYIAQSNVELDAQGNILADLVPCRHQNEFSLTTPDKINY 667 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME +VA S Sbjct: 668 MDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERIVASDS 727 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 G ++VAKR G+++ VDA RIV+R + + +GVDIY L K+ RSNQ+TC+NQRP+V Sbjct: 728 GVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCINQRPIVS 787 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 GD ++R D++ADGP TD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V +D FT+IH Sbjct: 788 TGDRIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHDDRFTTIH 847 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 IEE +ARDTKLG EEIT DIPNV E L N+DE G++ +GAEV GDILVGK+TPKGE Sbjct: 848 IEELTCIARDTKLGTEEITADIPNVGESALSNLDESGVVYIGAEVKAGDILVGKVTPKGE 907 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 + +TPEEKLLRAIFGEKA DV+D+SLRVPSG++GTV+DV++F R G++K+ R+ S+E E Sbjct: 908 TQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARAKSIEEEH 967 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 + + +D DE+ I + +IY R+ +L + A GP K + ++ D + + R +W+ Sbjct: 968 LARVRKDLIDERRIREEDIYHRVSHLLLDKVATGGPGSLKPGSKITQDYLDKVEREKWFD 1027 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 ++D+ V + +E L Q E +E RF + +KI GDD+ PGVL++VKV++A+KR Sbjct: 1028 IRIEDDAVSQQLEQLSKQLELLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKVYLAVKRR 1087 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 IQ GDKMAGRHGNKG++S ++P EDMP ++DGT VDIVLNPLGVPSRMN+GQ+ ETHLG Sbjct: 1088 IQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQVLETHLGL 1147 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG+KI ++++ + I +++LEK+ G + +DD ++ +A+ ++ Sbjct: 1148 AAKGLGRKIAQMLDERQTPEAI---KAYLEKIYNHDGVQRVNLKCLNDDELMTLADNLRA 1204 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E+ I SML++ADL G+++L DG TG FD PVTVGY+YMLKLNH+ Sbjct: 1205 GVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNPVTVGYMYMLKLNHL 1264 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1265 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1324 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ + G PESFNVL+KE++ALG+ I+LE+ Sbjct: 1325 GGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELEHD 1368 >gi|254283154|ref|ZP_04958122.1| DNA-directed RNA polymerase, beta subunit [gamma proteobacterium NOR51-B] gi|219679357|gb|EED35706.1| DNA-directed RNA polymerase, beta subunit [gamma proteobacterium NOR51-B] Length = 1365 Score = 1680 bits (4350), Expect = 0.0, Method: Composition-based stats. Identities = 716/1366 (52%), Positives = 971/1366 (71%), Gaps = 5/1366 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG +++DIP L+ +Q SY F + D+R + GL AAF+SV Sbjct: 1 MAYSYTEKKRIRKDFGSLEKVMDIPYLLAIQLDSYRKFTQDGVPVDQRGDYGLHAAFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+++SG A LE+V Y P FDV++C R TYA PL++ +RL+++D T +KSI Sbjct: 61 FPISSYSGNAALEYVDYSLGKPVFDVEECQLRGTTYACPLRVKVRLMIYDK--ETSSKSI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD+++ RIDRRRK+P T L ALG SEE+L F+ + Sbjct: 179 RVIPYRGSWLDFEFDPKDMVYARIDRRRKLPATVLLRALGYQSEEMLEMFFETTSFQLGD 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + + G + ++ D + ++E G+++T+ ++ L + GV++L + + Sbjct: 239 EHSATMKLVPERLRGDMAAFDIMADD--KVLVERGRRITARHIRELADAGVEYLAVPDEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +++ +V+ TGE+ +E I ++ L+ + EI D+ +Y + ++ +I +TL Sbjct: 297 LLGRRLSKGVVDTSTGEVLVECNTEITQELLDLLREKEISDVDTIYTNEIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N RL Sbjct: 357 AQDSTTNELEALVEIYRMMRPGEPPTKESAENLFQNLFFSPDRYDLSGVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 ++ + + + KEDI+ ++K LVD+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 417 ESSEGIGTLDKEDIVDVLKTLVDIRNGKGIVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNEYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT D+ YLSA+ E IAQA+++LDE+ F +EL+ R E + P ++D Sbjct: 597 RRVVDGVVTEDIEYLSAINEAGHVIAQASATLDENDRFVDELINVRHGNEFTVKPATEVD 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SPKQVVSIAA+LIPFLE+DD+NR LMG NMQRQAVP L+AE P VGTGME VA Sbjct: 657 FMDVSPKQVVSIAAALIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERYVAAD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VA+R G+++ VDA RIV+R + S VDIY L K++RSNQNTC+NQRP+V Sbjct: 717 SGVCEVARRGGVIDSVDASRIVVRVDADKVGSDESPVDIYNLTKYKRSNQNTCINQRPIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V R DI+ADGPS DLG+LALG+NM + FMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 777 KPGDVVARGDILADGPSVDLGELALGQNMRIGFMPWNGYNFEDSILVSERVVEEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EE+T DIPNV E L +DE GI+ +GAEV+ GDILVGK+TPKG Sbjct: 837 HIQELTCIARDTKLGSEEVTSDIPNVGEGALSKLDESGIVYIGAEVDAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPS GTV+DV++F R G++K+ R+ +E Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSSYKGTVIDVQVFTRDGLEKDPRAKQIEAA 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + ++RL +L GQ VSG G K T L+ ++++ R W+ Sbjct: 957 QLGDYRKDLKEEYRIYEEATFARLTGLLKGQKTVSG-GGLPKGTELTDAVLADLDRELWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D + + S + E ++LE+RF+ K +K+Q GDD+ PGVL++VKV++A+KR Sbjct: 1016 KIKTDDAALNDQLASAQRLLEEQNTLLEERFEIKKDKLQSGDDLAPGVLKIVKVYLAVKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ + G P+DIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISVIMPVEDMPYDERGEPIDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG KI ++ + + I D +L +AE + Sbjct: 1136 MAARGLGVKINDMLEQQAKLSQLRDFLKEIYSHATDSRRDADIDSLSDQELLDLAENLRD 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++T VFDGA E+++ ++LRMAD+ +SGQ LYDG TG+ FDRPVTVGY+YMLKLNH+ Sbjct: 1196 GVPMATAVFDGAHEDSVKALLRMADIPDSGQLKLYDGRTGDVFDRPVTVGYMYMLKLNHL 1255 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1256 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE+ Sbjct: 1316 AGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLESESD 1361 >gi|289209336|ref|YP_003461402.1| DNA-directed RNA polymerase subunit beta [Thioalkalivibrio sp. K90mix] gi|288944967|gb|ADC72666.1| DNA-directed RNA polymerase, beta subunit [Thioalkalivibrio sp. K90mix] Length = 1359 Score = 1680 bits (4350), Expect = 0.0, Method: Composition-based stats. Identities = 723/1365 (52%), Positives = 986/1365 (72%), Gaps = 7/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + + R+RK FGK P+I+D+P L+E Q SY FL P+ R GL AAF+SV Sbjct: 1 MALSYTEKKRIRKDFGKRPQILDVPYLLETQLTSYRDFLQAEKGPEARHALGLHAAFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG LE+VSY P FDV +C R +TYA PL++ LRL++ D + G+ + Sbjct: 61 FPIVSYSGHVQLEYVSYRLGEPLFDVKECQIRGVTYAAPLRVLLRLVIHDKEAPAGSTVV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLS-GKLLYA 181 K++KEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD D+G+ S KLLY Sbjct: 121 KEVKEQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDRGKTQGSAQKLLYN 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD+KD ++VRIDRRRK+P + L ALGMD+EEILSTF+ + Sbjct: 181 ARIIPYRGSWLDFEFDAKDGVYVRIDRRRKLPASILLRALGMDTEEILSTFFEFNQITLD 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 D L L G + D ++E+G+++T ++ +++ G+ L + + Sbjct: 241 EDGGELDLIPERL-RGETAVVDITDGKN--VIVEAGRRITPRHIREIEKAGINRLRVPDE 297 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G +A+ +V+ TGE+ A D + ++ L+++ ++ + +Y + ++ ++ +T Sbjct: 298 YLLGRVLAKGVVDESTGELMAAANDPLTQELLDKLRAEGVKSVETIYTNDYDHGPFMSDT 357 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D K + +A ++IYRVMRPG+ T AE++F+ LFF D+YDLS VGR+K N R+ Sbjct: 358 LRLDPTKTQLEAQVEIYRVMRPGEPPTKDAAENLFSNLFFSEDRYDLSAVGRMKFNRRVG 417 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 DT + + EDI+ ++K+L+DLRNG G DDID+LGNRR+RSVGEM +NQ+RLGL+R Sbjct: 418 RDTDEGPGVLSPEDILDVLKVLIDLRNGNGRTDDIDHLGNRRIRSVGEMAENQFRLGLVR 477 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER++ + + +MPQ+LINAKPV +AV EFF SSQLSQ + N LS +TH RR+ Sbjct: 478 VERAVKERLTVAESEGLMPQELINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRI 537 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGF+ETP Sbjct: 538 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNRYGFLETP 597 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV DGKVT+++VYLSA+EE IAQAN+++DE G T++LV CR E + +KI Sbjct: 598 YRKVEDGKVTDEIVYLSAIEESQYVIAQANAAMDEQGRLTDDLVSCRFQEEFTISSPDKI 657 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SPKQ+VS+AA+L+PFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 658 QYMDISPKQIVSVAAALLPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGIERTVAI 717 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG+AIVAKR G V+ VDA R+V+R + + GVDIY L K+ RSNQNT +NQRPL Sbjct: 718 DSGSAIVAKRGGTVDSVDAARVVVRVNDDETVAGEPGVDIYNLTKYSRSNQNTSINQRPL 777 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGDE+ R D++ADG STDLG+LALG+NM+VAFMPW+GYNFEDS+LISER+V ED +T+ Sbjct: 778 VAVGDEIARGDVLADGSSTDLGELALGQNMMVAFMPWNGYNFEDSILISERVVQEDRYTT 837 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE +ARDTKLG EEIT DIPNVSE L +DE G++ VGAEVNPGDILVGK+TPK Sbjct: 838 IHIEELNCVARDTKLGQEEITADIPNVSESLLAKLDESGVVYVGAEVNPGDILVGKVTPK 897 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DVR+F R G++K+ R+ S+E Sbjct: 898 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGIEGTVIDVRVFTRDGVEKDARAKSIEE 957 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 + + + +D D+ I + +IY+R+ ++L + A GP+G + ++ + R QW Sbjct: 958 DDLAAVKKDLKDQLRIYEDDIYARVEKLLVNKAAAGGPEGLGDGSKVTKKYLQGLSRDQW 1017 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 ++ ++D+ V +E L Q + + + +F+++ K+ GDD+PPGV ++VKV+VA+K Sbjct: 1018 FEVRLKDDAVNSQLEDLGRQLQEQHELFDKKFEHQKAKVAAGDDLPPGVQKMVKVYVAVK 1077 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG++S I+P EDMPFL+DGTPVD+VLNPLGVPSRMNVGQ+ E HL Sbjct: 1078 RRLQPGDKMAGRHGNKGVISMIVPEEDMPFLEDGTPVDVVLNPLGVPSRMNVGQVLEVHL 1137 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA GLG KI ++ +A +I+ LR FL+K+ + D ++ + + Sbjct: 1138 GWAAKGLGDKINRML---EAQAEIAKLREFLDKIYNHRDKKVDLDSMSDAEIIALCRNLR 1194 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA+E I MLR+ADL E+GQ+ L+DG TG+ FDRPVTVGY++MLKLNH Sbjct: 1195 GGVPMATPVFDGAEEAEIKEMLRLADLPETGQAELFDGRTGDSFDRPVTVGYMHMLKLNH 1254 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K+DD Sbjct: 1255 LVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKADD 1314 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GR ++Y++IV G E PESFNVL+KE++ALG++I+LE Sbjct: 1315 VQGRNKMYKNIVDGEHHMEANVPESFNVLMKEIKALGINIELEQD 1359 >gi|170785434|gb|ACB37713.1| RNA polymerase B' subunit [Candidatus Liberibacter asiaticus] Length = 1386 Score = 1679 bits (4349), Expect = 0.0, Method: Composition-based stats. Identities = 1385/1386 (99%), Positives = 1385/1386 (99%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK Sbjct: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK Sbjct: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY Sbjct: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ Sbjct: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS Sbjct: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN Sbjct: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL Sbjct: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL Sbjct: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR Sbjct: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET Sbjct: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK Sbjct: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA Sbjct: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT Sbjct: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP Sbjct: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE Sbjct: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ Sbjct: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM Sbjct: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH Sbjct: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWACVGLGKKIK LINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW Sbjct: 1141 LGWACVGLGKKIKGLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN Sbjct: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD Sbjct: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF Sbjct: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 Query: 1381 NKCELK 1386 NKCELK Sbjct: 1381 NKCELK 1386 >gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254039820|gb|ACT56616.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 1386 Score = 1679 bits (4349), Expect = 0.0, Method: Composition-based stats. Identities = 1386/1386 (100%), Positives = 1386/1386 (100%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK Sbjct: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK Sbjct: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY Sbjct: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ Sbjct: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS Sbjct: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN Sbjct: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL Sbjct: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL Sbjct: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR Sbjct: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET Sbjct: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK Sbjct: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA Sbjct: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT Sbjct: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP Sbjct: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE Sbjct: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ Sbjct: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM Sbjct: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH Sbjct: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW Sbjct: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN Sbjct: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD Sbjct: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF Sbjct: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 Query: 1381 NKCELK 1386 NKCELK Sbjct: 1381 NKCELK 1386 >gi|126666820|ref|ZP_01737797.1| DNA-directed RNA polymerase subunit beta [Marinobacter sp. ELB17] gi|126628865|gb|EAZ99485.1| DNA-directed RNA polymerase subunit beta [Marinobacter sp. ELB17] Length = 1358 Score = 1679 bits (4348), Expect = 0.0, Method: Composition-based stats. Identities = 704/1364 (51%), Positives = 971/1364 (71%), Gaps = 6/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P ++D+P L+ +Q S+ FL A ++R GL AAFKSV Sbjct: 1 MSYSYTEKKRIRKDFSKLPSVMDVPYLLSIQLDSFRDFLQSESAAEDRRETGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+VSY P FDV +C R +TYA PL++ +RLI++D + K+I Sbjct: 61 FPIASYSGNAALEYVSYRIGEPVFDVKECQLRGVTYAAPLRVKVRLIIYDR--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L +LG SE++L+ F+ + Sbjct: 179 RVIPYRGSWLDFEFDPKDAVFVRIDRRRKLPATILLRSLGYTSEQMLAMFFETSKFHIGA 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L + L G + + D D G + E G+++T+ +K L++ + L + ++ Sbjct: 239 ETCKLELVPSRL-RGDIATFDIKDKD-GNVIAEEGRRITARHIKQLEKANISELEVPTEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+D+++ +TGE+ +E + + + I + + DI LY + ++ ++ +TL Sbjct: 297 LYGRVLAKDMIDTKTGEMLVECNSELTAELITTILDAGVTDIETLYTNDLDCGPFMSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K+N RL Sbjct: 357 RNDPSRTPLEALVEIYRMMRPGEPPTKESAENLFNNLFFSEERYDLSAVGRMKLNRRLRR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + DII +++ L+D+RNG+G +DDIDNLGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 DESTGESILTHADIIDVLRTLIDIRNGQGQVDDIDNLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVRERLSLAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR N+YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATFARANSYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++VYLSA+EE N IAQA++ +D+ EELV R E ++P E ++ Sbjct: 597 RKVADGLVTDELVYLSAIEESNYVIAQASAEMDDGNRLVEELVTVRHQNETTVMPPEAVN 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E +VA+ Sbjct: 657 FMDVSPRQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLRAQVPLVGTGVERIVAQD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A+R G +E VDA RIV+R + + +GVDIY L K+ RSNQNTC+NQR +V Sbjct: 717 SGVCVTARRGGEIESVDAARIVVRVNNEETEAGDAGVDIYNLTKYTRSNQNTCINQRSIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD + R DI+ADGPS DLG+LALG+NM +AFMPW+GYNFEDS+LISE++V ED T+I Sbjct: 777 RQGDVIARGDILADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISEKVVQEDRLTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV+ GDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVSAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTS RVP+G GT++DV++F R GI+K++R+ +E++ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSSRVPTGTRGTIIDVQVFTRDGIEKDQRAQVIEKQ 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D DE I++ Y RL+ L GQ +S P G KK + L +D + PR +W+ Sbjct: 957 QLDKYRKDLKDEYRIVEGATYERLLNALEGQEVISSP-GLKKGSKLEADYLLNLPRPEWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++ + + +E + E K E RF +K K+Q GDD+ PGV ++VKV++A+KR Sbjct: 1016 KLRMKGDDLNELLEKSEQGLEERKKDHEARFDDKKGKLQQGDDLAPGVQKIVKVYLAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S + P EDMP+ + G VDIVLNPLGVPSRMNVGQ+ ETHLG Sbjct: 1076 SIQPGDKMAGRHGNKGVISAVKPIEDMPYDEFGNTVDIVLNPLGVPSRMNVGQVLETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG++I ++++ + ++ L + + +D +L + + Sbjct: 1136 AAAKGLGERISRMLDEQRKVAELRKLLDEIYN-HSAEVTQVDLDSLNDREILDLCNNLRG 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E + ML +A L +GQ+ L+DG TG+ FDRP+TVGY+Y+LKLNH+ Sbjct: 1195 GVPMATPVFDGAQEAEVKHMLELAGLSTTGQTRLFDGRTGDAFDRPITVGYMYILKLNHL 1254 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 + DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1255 IDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRTR+Y++IV G+ E G PESFNVLVKE+++LG+ I+LE+ Sbjct: 1315 NGRTRMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESD 1358 >gi|304310009|ref|YP_003809607.1| DNA-directed RNA polymerase beta subunit [gamma proteobacterium HdN1] gi|301795742|emb|CBL43941.1| DNA-directed RNA polymerase beta subunit [gamma proteobacterium HdN1] Length = 1356 Score = 1678 bits (4345), Expect = 0.0, Method: Composition-based stats. Identities = 723/1365 (52%), Positives = 971/1365 (71%), Gaps = 10/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FG+ + +D+P L+ +Q SY FL ++ R ++GLQAAFKSV Sbjct: 1 MAYSFTEKKRIRKAFGQINDAMDVPYLLAIQLDSYRKFLQLDKLAAGRGDDGLQAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPIT++SG+A LEFV Y P FDV +C R TY+ PL++ LRLI++D D + K+I Sbjct: 61 FPITSYSGSAALEFVEYVLGEPAFDVKECQLRGATYSAPLRVKLRLIIYDKDSPS--KAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++VRIDRRRK+P T L ALG +SE+IL F+ Sbjct: 179 RIIPYRGSWLDFEFDPKDLVYVRIDRRRKLPATVLLRALGYESEQILELFFDTNKVLVES 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + DT V+ESG+++T+ ++ L++ ++ L + + Sbjct: 239 GEFKLELIPERL-RGETALFDIKAGDT--VVVESGRRITARHIRQLEKAELRSLLVPKEY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+ +++ TGE+ + ++ L+++ + LY + ++ ++ +TL Sbjct: 296 LVGKVLAKGVIDRSTGEVIAPCNAEVTDELLDKLVGLSVTSFETLYTNELDRGPFLSDTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ +AL++IYR+MRPG+ T AE +F LFF +++YDLS VGR+K N RL Sbjct: 356 RTDQTTSALEALVEIYRMMRPGEPPTKDAAEGLFKNLFFSAERYDLSAVGRMKFNRRLGR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +EDI+A++K LV +RNG+G +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 416 KETTGEGTLSREDIVAVLKTLVAIRNGQGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 476 ERAVKERLSLAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR N YGF+E+PY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLAAFARANDYGFLESPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +G+ T++VV+LSA+EE +AQA++ LDE+G+ E+LV R E + E ++ Sbjct: 596 RKVTNGRATDEVVFLSAIEESEYMVAQASAELDEEGNLVEDLVPVRHKNEFTVTTTENVE 655 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME VA+ Sbjct: 656 YMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMEGTVARD 715 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G++++VDA RIV+R E ++ +GVDIY L KF RSNQNTC+NQ+PLV Sbjct: 716 SGVCVVAKRGGLIDRVDASRIVVRVNEDEITDGEAGVDIYSLTKFTRSNQNTCINQKPLV 775 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD V RNDI+ADGPS D+G+LALG+NM VAFMPW+GYNFEDS+++SER+V ED FT+I Sbjct: 776 HVGDRVARNDILADGPSVDIGELALGQNMRVAFMPWNGYNFEDSIMLSERVVQEDRFTTI 835 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNVSE L +DE G++ +GAEV GDILVGK+TPKG Sbjct: 836 HIQELTCVARDTKLGPEEITADIPNVSESALAKLDEAGVVHIGAEVAAGDILVGKVTPKG 895 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG SGTV+DV++F R G++K++R++ +E Sbjct: 896 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGTSGTVIDVQVFTRDGVEKDQRALQIENA 955 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE +D +DE I+ RL + L + G GFK+ L+ +L+ S + Sbjct: 956 EIEKYRKDLNDEFRIIQIATVQRLKKALLDRRVNGG-AGFKRGDSLTQELLEGLDNSALF 1014 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE ++E K + +S E + NK KI GDD+ GVL++VKV++A+KR Sbjct: 1015 ELRLADEDAAESLEKAKAYLDEVRSEQERKLANKKRKITTGDDLAHGVLKIVKVYLAIKR 1074 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS I+P EDMP ++G VD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1075 RVQPGDKMAGRHGNKGVVSVIMPIEDMPHDENGVAVDVVLNPLGVPSRMNVGQILETHLG 1134 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQWK 1201 A GLG++I ++ + + +I +R FL++V + DD V +A + Sbjct: 1135 LAARGLGERINRMLEEQR---EIFEIREFLDRVYNGDKQTRVNLKSLTDDEVRTLATNLR 1191 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +GVP++T VFDGA E+ I MLR+A ESGQ L+DG TGE F+ VTVGY+YMLKLNH Sbjct: 1192 AGVPMATLVFDGAKEQEIKEMLRLAGQPESGQMDLFDGRTGEKFNCKVTVGYMYMLKLNH 1251 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLTIKSDD Sbjct: 1252 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTIKSDD 1311 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRTRVY++IV G+ E G PESFNVLVKE+++LG+ I+LE Sbjct: 1312 VNGRTRVYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELEQD 1356 >gi|254490640|ref|ZP_05103825.1| DNA-directed RNA polymerase, beta subunit [Methylophaga thiooxidans DMS010] gi|224464096|gb|EEF80360.1| DNA-directed RNA polymerase, beta subunit [Methylophaga thiooxydans DMS010] Length = 1358 Score = 1677 bits (4344), Expect = 0.0, Method: Composition-based stats. Identities = 717/1364 (52%), Positives = 973/1364 (71%), Gaps = 6/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK P ++++P+L+ Q SY FL + +A DER +GL AAF+SV Sbjct: 1 MAYTFTEKKRIRKDFGKRPSVLNVPNLLATQVNSYQDFLQLGVAADERGAKGLHAAFESV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A L++VSY P FDV +C R +TYA PL++ +RL+++D D K + Sbjct: 61 FPIKSHTGMAELQYVSYRLGTPSFDVKECQLRGVTYAAPLRVKMRLVIYDKDAPAKQKVV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT+ G FVI G +R++VSQLHRSPG+ FD D+G+ SGK+LY Sbjct: 121 KDIKEQEVYMGEIPLMTEKGNFVINGTERVIVSQLHRSPGVFFDSDRGKTHSSGKILYNA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG ++E+L F+ + ++G Sbjct: 181 RVIPYRGSWLDFEFDPKDSVFVRIDRRRKLPATILLRALGYSNQEMLEIFFSNDSFVKKG 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + L L G V +VD D GE ++E+ +++T ++ +++ G+ L + ++ Sbjct: 241 DNFEMALEPQRL-RGQSVPFDIVDPD-GEVIVEAERQITGRHIRRMEKAGMNSLTVPTNF 298 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+D+++ ETGE+ A D I + LE +I +I +Y + +++ ++ +TL Sbjct: 299 LVGKVLAKDMIDPETGELLAAANDEITDDLLEAFARFDINEIDTIYSNDLDDGPFMSDTL 358 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ + +A ++IYR+MRPG+ T AE++F LFF D+YDLS+VGR+K N RL Sbjct: 359 RLDETRSALEAKIEIYRMMRPGEPPTEDAAENLFTSLFFTMDRYDLSSVGRMKFNRRLGR 418 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + KEDI+A+++ L+ +RNG G +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 419 EELEGEGTLAKEDILAVLRELIAIRNGNGIVDDIDHLGNRRVRSVGEMAENQFRVGLVRV 478 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + + +MPQ LINAKPV +A+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 479 ERAVRERLSIAESEGLMPQQLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 538 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGFIETPY Sbjct: 539 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNEYGFIETPY 598 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGK T D+VYLSA++E IAQA L++D S E +V CR E L+P E++ Sbjct: 599 RKVIDGKATTDIVYLSAIDEGEYKIAQATIELNDDNSIAENMVHCRYRNESSLMPSEQVQ 658 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VVAK Sbjct: 659 LMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERVVAKD 718 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + AKR G V+ VDA RIVIR + + + SGVDIY L+K+ RSNQ+TC+NQRP+V Sbjct: 719 SGVMVTAKRGGTVDSVDASRIVIRVNDDEAEAGESGVDIYNLIKYARSNQSTCINQRPIV 778 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD + D++ADGPSTD G+LALG+N+LVAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 779 KPGDVIASGDVLADGPSTDKGELALGQNILVAFMPWNGYNFEDSILVSERVVEEDRFTTI 838 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EE+T DIPNVSE L +DE GI+ VGAEV PGDILVGK+TPKG Sbjct: 839 HIQELNCLARDTKLGTEEVTSDIPNVSESALSKLDESGIVYVGAEVKPGDILVGKVTPKG 898 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+ER+ +E+ Sbjct: 899 ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTYGTVIDVQVFTRDGVEKDERTQEIEKA 958 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++E + D D+ I+ +++ RL L G+ A +GP KK T L+ + ++W+ Sbjct: 959 ELEKVWADLKDQNRIMTEDVFERLERNLVGKVAEAGP-DLKKGTKLTKAYLQGLEHAKWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ E + +E + + +E+ F K EK+ G D+ PGV R+VKVF+A+KR Sbjct: 1018 DIRMESEDLNTLLEQANTHLKQYRQEMEEAFGIKKEKLTSGHDLAPGVQRMVKVFLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ DG PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1078 RIQPGDKMAGRHGNKGVISNIVPVEDMPYTADGRPVDIVLNPLGVPSRMNIGQILEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG KI+ ++ K ++ LR FL KV T E + DD ++ +A+ + Sbjct: 1138 WAAKGLGYKIEEMLQQQKG---MAELREFLGKVYNTSGTKEDLDSLTDDEIIELAKNLQG 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E I ML +A L SGQ+ + DG TGE F RPVT+GY++MLKLNH+ Sbjct: 1195 GVPMATPVFDGAQENEIKDMLELAGLPRSGQAQMIDGRTGEFFHRPVTIGYMHMLKLNHL 1254 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEMLT+KSDDV Sbjct: 1255 VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDV 1314 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ + G PESF VL +E+++LG+ +DL + Sbjct: 1315 NGRTKIYKNIVDGDYRMDAGMPESFKVLTREIRSLGIDVDLVDE 1358 >gi|326793551|ref|YP_004311371.1| DNA-directed RNA polymerase subunit beta [Marinomonas mediterranea MMB-1] gi|326544315|gb|ADZ89535.1| DNA-directed RNA polymerase subunit beta [Marinomonas mediterranea MMB-1] Length = 1366 Score = 1677 bits (4343), Expect = 0.0, Method: Composition-based stats. Identities = 728/1371 (53%), Positives = 988/1371 (72%), Gaps = 12/1371 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D+P L+ +Q SY FL ER GL AFKSV Sbjct: 1 MAYSYTEKKRIRKDFGKLPPVLDVPYLLAIQLESYRKFLQEGKDLAEREELGLHGAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ +FSG A LE+V Y P FDV +C R +TYA PL++ +RLI++D + K+I Sbjct: 61 FPMVSFSGNAALEYVDYRLGKPVFDVKECQLRGVTYAAPLRVRVRLIIYDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLL++ Sbjct: 119 KDIREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLHSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+PV+ L ALG +EEIL TF+ + + Sbjct: 179 RVIPYRGSWLDFEFDPKDCVFVRIDRRRKLPVSILLRALGYKTEEILDTFFDTVRFYLSK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + L A+ L G +VD GE ++E G+++T+ ++++ + G++ L I + Sbjct: 239 DGFEMDLVASRL-RGETALFDIVDG-NGEIIVEEGRRITAKHIRAMDKAGLERLSIPLEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+++V+ TGE+ EA + LE + S I++I +LY + +++ +I +TL Sbjct: 297 ILGKVSAKNLVHPATGELIAEANTELSVDLLEALVGSGIKEIDVLYTNDLDHGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE +F LFF ++YDLS+VGR+K N RL Sbjct: 357 RIDPTNNQLEALVEIYRMMRPGEPPTKESAEGLFQGLFFAEERYDLSSVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + EDIIA++K L+D+RNG G +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 417 DEDKGPGILDNEDIIAVLKTLLDIRNGNGMVDDIDHLGNRRVRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + D +MPQDL+NAKPV +A+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVKERLSMAEADGLMPQDLLNAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+++AR N+YGF+ETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSTYARTNSYGFLETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGK+T++ VY+SA++E IAQA+ ++DE+G +ELV R E L+ +EK++ Sbjct: 597 RKVVDGKMTDETVYVSAIDEAKYVIAQASVNVDEEGRLVDELVQVRHMHETTLLAKEKVN 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTGME VAK Sbjct: 657 LMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKADKPVVGTGMERNVAKD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG IVA+R G++E VDA RIV+R + +GVDIY L K+ RSNQNTC+NQR LV Sbjct: 717 SGVCIVARRGGVIESVDASRIVVRVNSEETLAGEAGVDIYNLTKYVRSNQNTCINQRTLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G++V DI+ADGPS D+GDLALG+NM +AFMPW+G+NFEDS+L+SER+V ED FTSI Sbjct: 777 MKGEKVASGDIMADGPSVDMGDLALGQNMRIAFMPWNGFNFEDSILVSERVVEEDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +D G++ +GAEV PGDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEGALSKLDSSGVVYIGAEVEPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTS RV +G GTV+DV++F R GI+K+ER+ S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSQRVKTGTRGTVIDVQVFTRDGIEKDERAKSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I+++ + RL E L GQ A GP G ++ +++ D ++ +W+ Sbjct: 957 QLDQVRKDLNEEFRIVEKATFERLAEALVGQQAEGGP-GLARNAIITEDYLANLDHPEWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + V E +E + + L+ +F++K K+Q GDD+ PGVL++VKV+VA+KR Sbjct: 1016 KIRVASEDASEQLEKAQAALIERRKELDAKFEDKKRKLQTGDDLAPGVLKIVKVYVAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I+P EDMP+ ++G PVDIVLNPLGVPSRMNVGQ+ ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISKIMPVEDMPYDENGDPVDIVLNPLGVPSRMNVGQVLETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGD-ISPLRSFLEKVIG------TGSHTEKISDYDDDSVLR 1195 A GLG+KI +I + + + LRSFL +V + E + + DD +L Sbjct: 1136 AAAKGLGRKINEMIQIEREKAETVQELRSFLGEVYNGHEDGLRSARVEDLDSFTDDEILT 1195 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 +A K GVP+++ FDGA E I MLR+A L+ESGQ L++G TG+ F+RPVTVGY+Y Sbjct: 1196 LASNLKGGVPMASGAFDGAKEAEIKRMLRLAGLNESGQIKLFNGRTGDAFERPVTVGYMY 1255 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEML Sbjct: 1256 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1315 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 T+KSDDV GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LEN Sbjct: 1316 TVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELENE 1366 >gi|149185503|ref|ZP_01863819.1| DNA-directed RNA polymerase 140 kDa subunit [Erythrobacter sp. SD-21] gi|148830723|gb|EDL49158.1| DNA-directed RNA polymerase 140 kDa subunit [Erythrobacter sp. SD-21] Length = 1393 Score = 1677 bits (4343), Expect = 0.0, Method: Composition-based stats. Identities = 811/1376 (58%), Positives = 1053/1376 (76%), Gaps = 16/1376 (1%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 R+RK FG E++D+P+LIEVQ+ SY+ FL + A GL+ +SVFP+ Sbjct: 15 TAKRRIRKIFGDIHEVVDMPNLIEVQRESYEQFLRSDKATGHVS--GLEKTLRSVFPLRD 72 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 F+G A L+FV YE + PK+D+ +C R +TYA P+K+TLRLIVF+VD+ T +S+ DIKE Sbjct: 73 FAGTAELDFVHYELEAPKYDIVECHQRGITYAAPMKVTLRLIVFEVDQETETRSVLDIKE 132 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHD+G+ SGKLL+A RIIP Sbjct: 133 QDVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVLFDHDRGKTHSSGKLLFAARIIPY 192 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+D EFD+KD+++VRIDR+RK+PVT+ L +LG+D+E+ILS FY K+ + + D W Sbjct: 193 RGSWLDFEFDAKDVVNVRIDRKRKLPVTALLYSLGLDAEDILSHFYDKVTWKRAKDGWEL 252 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P A + K + LVD TGE+V +G+K++ + G++ L + ++ + G Y Sbjct: 253 PFVAEN-WRNQKPAFPLVDAKTGEEVFPAGQKISPRAANKAAKDGLETLLLPTEEIFGRY 311 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +ED+++ TG IYIEAGD + ++LE + + + + +L +D VN +IRNT+ DK Sbjct: 312 ASEDLIDESTGRIYIEAGDEVSAENLEVLDAAGVDSLELLDIDHVNTGPWIRNTMKVDKA 371 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 ++R + L IY+VMRPG+ T AE++F LFFD ++YDLS VGRVK+NMRL LD D Sbjct: 372 ENRDEGLEAIYKVMRPGEPPTKETAEALFEGLFFDGERYDLSAVGRVKLNMRLELDAEDT 431 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 V +RKEDI+A++K LVDL++GKG +DDIDNLGNRRVRSVGE+L+NQYR+GLLRMER++K Sbjct: 432 VTTLRKEDILAVVKELVDLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVK 491 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH RR+SALG G Sbjct: 492 ERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPG 551 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL++FARVN YGFIETPYRKV D Sbjct: 552 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETPYRKVKD 611 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 KVT++V+YLSAMEE+ +AQA++ LDE+G F EELV R G+ ++ PRE I +D S Sbjct: 612 NKVTDEVIYLSAMEEQKHTVAQASADLDENGGFVEELVSARQNGDNLMAPRETITLMDVS 671 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+ ASLIPFLENDD+NR LMG NMQRQAVPL++AEAP+VGTGME VA+ SGAAI Sbjct: 672 PKQLVSVGASLIPFLENDDANRALMGANMQRQAVPLVQAEAPWVGTGMEETVARDSGAAI 731 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 AKR G+V+QVDA RIVIR+ GD++P SGVDIY L KFQRSNQ+TC+NQRPLVKVG+ Sbjct: 732 TAKRGGVVDQVDATRIVIRA-IGDVEPGQSGVDIYTLQKFQRSNQDTCINQRPLVKVGET 790 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V D+IADGPSTDLG+LALGRN LVAFMPW+GYN+EDS+LISER+V +DVFTSIHIEEF Sbjct: 791 VEPGDVIADGPSTDLGELALGRNTLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIEEF 850 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EVMARDTKLGPE+ITRDIPNV EE L+N+DE GI+ +GAEV+PGDIL GKITPKGESPMT Sbjct: 851 EVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILAGKITPKGESPMT 910 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTSLR+P GV+GTVV+VR+FNRHGI+ ++R+ +++ E+IE L Sbjct: 911 PEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIEIDDRTRAIQNEEIERL 970 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 +D DE+ IL+R Y+RL ++L GQ A + PKG KK + ++ +++ + +W++FAV Sbjct: 971 RKDAADERAILNRATYNRLRDMLVGQTASAAPKGVKKGSEITEEVLEGVDKHEWFKFAVA 1030 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D+ Q+ +E++K QY+ S +++D+F+++ EK++ GD++ PGVL++VKVFVA+KR +Q G Sbjct: 1031 DDNRQQQIEAVKSQYDESVKVIDDKFEDRKEKLERGDELAPGVLKMVKVFVAVKRKLQPG 1090 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRILP EDMPFL DGTPVDIVLNPLGVPSRMNVGQIFETHLG A Sbjct: 1091 DKMAGRHGNKGVISRILPVEDMPFLADGTPVDIVLNPLGVPSRMNVGQIFETHLGMAARN 1150 Query: 1148 LGKKIKSLINDYKANGDI-----------SPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 LG +I + D+K + L V G + E + + ++ + Sbjct: 1151 LGMQIGEQLEDWKKANPNASEDYAKAKPPEAVIERLNDVYGDR-YAEDLKARSTEEIVEL 1209 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A + GVP+ TPVFDGA E + L A LD GQS+L+DG TGE FDR VTVG IYM Sbjct: 1210 ASNLRFGVPMGTPVFDGAREGDVTVELERAGLDADGQSVLFDGRTGEAFDRKVTVGIIYM 1269 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQE+LT Sbjct: 1270 LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEILT 1329 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 +KSDDV+GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L++ Sbjct: 1330 VKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKSLADDEDD 1385 >gi|119502915|ref|ZP_01625000.1| DNA-directed RNA polymerase subunit beta [marine gamma proteobacterium HTCC2080] gi|119461261|gb|EAW42351.1| DNA-directed RNA polymerase subunit beta [marine gamma proteobacterium HTCC2080] Length = 1363 Score = 1676 bits (4341), Expect = 0.0, Method: Composition-based stats. Identities = 717/1366 (52%), Positives = 967/1366 (70%), Gaps = 5/1366 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG +++DIP L+ +Q SY F + D R GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFGSLAKVMDIPYLLAIQLDSYRKFTQDGVEDDARGEHGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y+ P FDVD+C+ R TYA L++ +RLI++D + +KSI Sbjct: 61 FPIASYSGNAALEYVGYKLGKPVFDVDECVLRGTTYACALRVKVRLIIYDK--ESSSKSI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 119 KDIKEQDVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + RIDRRRK+P T L ALG DSEEIL+ FY + Sbjct: 179 RVIPYRGSWLDFEFDPKDQVFARIDRRRKLPATVLLRALGYDSEEILAMFYETTSFQLGE 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + G + + D + ++E G+++T+ ++ L + G+ FL + Sbjct: 239 ENSNTMTLVPKRLQGEMAAFDIAIDD--KLIVERGRRITARHIRQLDDAGIDFLAAPDEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+ TGE+ +E I E+ L + EI I LY + ++ +I +TL Sbjct: 297 LLGRRLAKNVVDTSTGEVLVECNVEITEELLAILREKEIDTIETLYTNEIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +++ +AL++IYR+MRPG+ T AE++F LFF +D+YDLS VGR+K N RL Sbjct: 357 AGDASRNALEALVEIYRMMRPGEPPTKESAENLFQNLFFSADRYDLSGVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D+ + + + +EDI+ ++K LV +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 417 DSSEGIGTLDREDIVDVLKALVGIRNGKGVVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNEYGFLEAPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +G VT+D+ YLSA+ E IAQA++ +DE F ++L+ R E + P ++D Sbjct: 597 RKVVNGVVTDDIEYLSAINEAEHVIAQASAQMDEKNRFVDDLINVRHMNEFTIKPAAEVD 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D S KQVVSIAA+LIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTGME VA Sbjct: 657 FMDVSAKQVVSIAAALIPFLEHDDANRALMGSNMQRQAVPTLVADKPLVGTGMERYVAGD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VA+RAG ++ VDA RIV+R ++ S VDIY L K++RSNQNTC+NQRP+V Sbjct: 717 SGVCKVARRAGTIDSVDASRIVVRVDADNVAKGESPVDIYNLTKYKRSNQNTCINQRPIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD + R DI+ADGPS D+G+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 777 KVGDRIDRGDILADGPSVDMGELALGQNMRIAFMPWNGYNFEDSILVSERVVKEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV+ GDILVGK+TPKG Sbjct: 837 HIQELTCIARDTKLGSEEITADIPNVGEGALGKLDESGIVYIGAEVDAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPS GTV+DV++F R G++K+ R+ +E Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSSYKGTVIDVQVFTRDGLEKDPRAKQIENA 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + Y+RL +L GQ +SG G K T L+ ++++ R QW+ Sbjct: 957 QLADYRKDLREELRIYEEATYARLAALLKGQTTLSG-GGLAKGTKLTDAVLADLEREQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + D ++ + + E LE+R+++K +K+ GDD+ PGVL++VKV++A+KR Sbjct: 1016 KLKLGDAELNDQLTAAHELLEEQNRQLEERYESKKDKLSSGDDLQPGVLKIVKVYLAVKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ + G P+DIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISVIMPVEDMPYDERGEPIDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG KI +++ G + + I +D +L +A+ + Sbjct: 1136 MAAHGLGLKINTMLEQQAKIGQLRDFLKKIYAHASDKRRDADIDSLNDTELLELADNLRK 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA EE + ++LR+AD+ +SGQ LYDG +G+ F RPVTVGY+YMLKLNH+ Sbjct: 1196 GVPMATPVFDGAAEEEVKALLRLADIPDSGQLTLYDGRSGDTFMRPVTVGYMYMLKLNHL 1255 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1256 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE+ Sbjct: 1316 AGRTKMYKNIVDGDHKMEPGMPESFNVLIKEIRSLGIDIDLESESE 1361 >gi|90417542|ref|ZP_01225463.1| DNA-directed RNA polymerase beta subunit [marine gamma proteobacterium HTCC2207] gi|90330634|gb|EAS45924.1| DNA-directed RNA polymerase beta subunit [marine gamma proteobacterium HTCC2207] Length = 1380 Score = 1676 bits (4340), Expect = 0.0, Method: Composition-based stats. Identities = 717/1388 (51%), Positives = 978/1388 (70%), Gaps = 32/1388 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK P ++D+P L+ +Q SY +F +A +R N GL AA S+ Sbjct: 1 MAYSFTEKKRIRKNFGKLPNVMDLPYLLAIQLDSYKNFTQTGVAVGDRQNTGLHAALNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +SG A LE+V Y P FDV++C R +T++VPL++ +RL+++D + K+I Sbjct: 61 FPIVGYSGHAALEYVDYVLGKPAFDVEECKLRGVTFSVPLRVRVRLVIYDK--ESTNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ +Y+G++PLMT +GTF+I G +R++VSQLHRSPG+ FDHDKG+ SGKLLY Sbjct: 119 KDIREQEVYLGEIPLMTDNGTFIINGTERVIVSQLHRSPGVIFDHDKGKTHSSGKLLYTA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KDI++VRIDRRRK+P T L ALG +SEEIL F+ ++ Q+ Sbjct: 179 RVIPYRGSWLDFEFDPKDILYVRIDRRRKLPATILLRALGYNSEEILGMFFDTSIFHQKK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + L L G + D G V+E G+++T+ ++ L++ V L + ++ Sbjct: 239 DGYTLELDPERL-RGEITVFDIKDKK-GAVVVEKGRRVTARHIRDLEKGKVTSLEVPAEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G A DI + +TGE+ +E I E+ LE++ + ++DI LY + ++ +I +TL Sbjct: 297 LLGRATANDIADPKTGELLLECNTEITEEILEQLAEAGVKDIETLYTNDLDCGPFIADTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ + +AL++IYR+MRPG+ T AE++F LFF+ ++YDLS+VGR+K N RL+ Sbjct: 357 RIDPSRTQLEALVEIYRMMRPGEPPTKESAENLFYNLFFNLERYDLSSVGRMKFNRRLDR 416 Query: 423 DTPDDVRHIRKEDIIAIIKI----------------------LVDLRNGKGTIDDIDNLG 460 + E ++ K L+++RNGKG +DDID+LG Sbjct: 417 VEEAGCGVLYDERYFSMQKTDEAHELFEEFGEGSDIADVMQTLINIRNGKGGVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRR+RSVGEM +NQ+R+GL+R+ER++KER+S + + +MPQDL+NAKPV +A+ EFF SS Sbjct: 477 NRRIRSVGEMAENQFRVGLVRVERAVKERLSMAESEELMPQDLVNAKPVAAAMKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL ++AR N+YGFIETPYRKV + KVT+ + YLSA+ E IAQA++ L+ G F Sbjct: 597 GLINSLATYARTNSYGFIETPYRKVVNNKVTDQIEYLSAINESQYVIAQASAKLNAKGEF 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 E++V R E + ID++D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 VEDVVNVRHQNEFTVKLPGDIDYMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L AEAP VGTG+E VA SG VAKR G++E VDA RIV+R + + + +GVD Sbjct: 717 VPTLLAEAPLVGTGIERPVASDSGVCKVAKRGGVIESVDAGRIVVRVSDAETESGDAGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L K+ RSNQNTC+NQRP+V GD V R D++ADGPS DLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLTKYTRSNQNTCINQRPIVNQGDVVARGDVLADGPSVDLGELALGQNMRIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 +NFEDS+LISER+V ED FT+IHI+E +ARDTKLG EEIT DIPNV E L +DE G Sbjct: 837 FNFEDSILISERVVKEDRFTTIHIQELTCVARDTKLGSEEITADIPNVGEVALARLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ + GTV+ Sbjct: 897 VVHIGAEVAAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTSIKGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 +V++F R G+DK++RS+ +ER +++ +D +DE I++ RL L G V + Sbjct: 957 NVQVFTRDGLDKDQRSLDIERAELDQYRKDLNDEYRIVENATLGRLFTALVGGKVVKA-E 1015 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 G KK L++D ++EY W+ + + + + + + Q + L++RF+ K K+ Sbjct: 1016 GLKKGAELTADAVAEYSSDDWFAIRMDNADLNDQIAAAQTQLGERRVDLDERFEEKRRKL 1075 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 Q GDD+ PGVL+ VKV++A+KR IQ GDKMAGRHGNKG++S I P EDMP+ ++G PVDI Sbjct: 1076 QSGDDLAPGVLKTVKVYLAVKRRIQPGDKMAGRHGNKGVISVIKPIEDMPYDENGEPVDI 1135 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GT 1178 VLNPLGVPSRMNVGQ+ ETH+G A GLG KI ++I KA + +R FL+++ G Sbjct: 1136 VLNPLGVPSRMNVGQVLETHMGMAAKGLGVKIDAMI---KAQSKAAEIRKFLQEIYDVGE 1192 Query: 1179 GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYD 1238 + + + D VL +A + GVP++TPVFDGA+E + +L +ADL ESGQ+ LYD Sbjct: 1193 TVYGTDLKELSDKEVLELAGNLRKGVPIATPVFDGANEVELKKLLELADLHESGQTTLYD 1252 Query: 1239 GLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEME 1298 G +G+ FDRPVTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEME Sbjct: 1253 GRSGDKFDRPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1312 Query: 1299 VWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALG 1358 VW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV G+ E G PESFNVLVKE+++LG Sbjct: 1313 VWALEAYGAAYTLQEMLTVKSDDVAGRTKMYKNIVDGDHRMEPGMPESFNVLVKEVRSLG 1372 Query: 1359 LSIDLENS 1366 ++++LEN Sbjct: 1373 INMELENE 1380 >gi|107103782|ref|ZP_01367700.1| hypothetical protein PaerPA_01004853 [Pseudomonas aeruginosa PACS2] Length = 1336 Score = 1676 bits (4339), Expect = 0.0, Method: Composition-based stats. Identities = 719/1344 (53%), Positives = 975/1344 (72%), Gaps = 9/1344 (0%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 +D+P L+ +Q SY FL ++ + GL AAFKSVFPI ++SG A LE+V Y Sbjct: 1 MDVPYLLAIQLDSYREFLQAGATKEQFRDIGLHAAFKSVFPIISYSGNAALEYVGYRLGE 60 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 P FDV +C+ R +T+AVPL++ +RLI+FD + K+IKDIKEQ +YMG++PLMT++GT Sbjct: 61 PAFDVKECVLRGVTFAVPLRVKVRLIIFDR--ESSNKAIKDIKEQEVYMGEIPLMTENGT 118 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 F+I G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ RIIP +G W+D EFD KD + Sbjct: 119 FIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVF 178 Query: 204 VRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 VRIDRRRK+P + L ALG +EEIL+ FY V+ +G+ L L G S Sbjct: 179 VRIDRRRKLPASVLLRALGYSTEEILNAFYATNVFHIKGETLNLELVPQRL-RGEVASID 237 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 + D +G+ ++E G+++T+ + L++ GV L + D L G +A+ IV+ TGEI E Sbjct: 238 IKDG-SGKVIVEQGRRITARHINQLEKAGVSQLEVPFDYLIGRTIAKAIVHPATGEIIAE 296 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 + L ++ +++ I LY + ++ +I +TL D ++ +AL++IYR+MRP Sbjct: 297 CNTELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTLKIDNTSNQLEALVEIYRMMRP 356 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKIL 443 G+ T AE++F LFF +++YDLS VGR+K N R+ + + KEDII ++K L Sbjct: 357 GEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGRTEIEGPGVLSKEDIIDVLKTL 416 Query: 444 VDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL 503 VD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ER++KER+S + + +MPQDL Sbjct: 417 VDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDL 476 Query: 504 INAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHP 563 INAKPV +A+ EFF SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHP Sbjct: 477 INAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHP 536 Query: 564 THYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEE 623 THYGR+CP ET EG NIGL++SL ++AR N YGF+E+PYR V D VT+++V+LSA+EE Sbjct: 537 THYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVKDSLVTDEIVFLSAIEEA 596 Query: 624 NRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLE 683 + IAQA+++L+E G +ELV R E + E + +D SPKQVVS+AASLIPFLE Sbjct: 597 DHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLE 656 Query: 684 NDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRI 743 +DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ SG +VA+R G+++ VDA R+ Sbjct: 657 HDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRV 716 Query: 744 VIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLG 803 V+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV GD V R DI+ADGPSTD+G Sbjct: 717 VVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDVVARGDILADGPSTDMG 776 Query: 804 DLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITR 863 +LALG+NM VAFMPW+G+NFEDS+ +SER+V ED FT+IHI+E +ARDTKLGPEEIT Sbjct: 777 ELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITA 836 Query: 864 DIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVD 923 DIPNV E L +DE GI+ VGAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA D Sbjct: 837 DIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 896 Query: 924 VRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIY 983 V+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Q++ + +D ++E I++ + Sbjct: 897 VKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDQIRKDLNEEFRIVEGATF 956 Query: 984 SRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYE 1043 RL L G A GP KK T ++ D + R QW++ + D+ + +E + Sbjct: 957 ERLRAALVGAKAEGGPA-LKKGTEITDDYLDGLERGQWFKLRMADDALNEQLEKAQAYIS 1015 Query: 1044 TSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRI 1103 + +L+D+F++K K+Q GDD+ PGVL++VKV++A+KR IQ GDKMAGRHGNKG+VS I Sbjct: 1016 DRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPGDKMAGRHGNKGVVSVI 1075 Query: 1104 LPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANG 1163 +P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG A GLG+KI ++ + + Sbjct: 1076 MPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMLEEQR--- 1132 Query: 1164 DISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSM 1222 ++ LR FL ++ G E + + D+ +L +A+ + GVP++TPVFDGA E I +M Sbjct: 1133 KVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLRGGVPMATPVFDGAKEREIKAM 1192 Query: 1223 LRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQP 1282 L++ADL ESGQ L+DG TG F+RP TVGY+YMLKLNH+V DK++ARSTGSYSLVTQQP Sbjct: 1193 LKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1252 Query: 1283 LGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETG 1342 LGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV G+ E G Sbjct: 1253 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEAG 1312 Query: 1343 TPESFNVLVKEMQALGLSIDLENS 1366 PESFNVL+KE+++LG+ I+LE Sbjct: 1313 MPESFNVLIKEIRSLGIDIELETE 1336 >gi|152998278|ref|YP_001343113.1| DNA-directed RNA polymerase subunit beta [Marinomonas sp. MWYL1] gi|189043859|sp|A6W399|RPOB_MARMS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|150839202|gb|ABR73178.1| DNA-directed RNA polymerase, beta subunit [Marinomonas sp. MWYL1] Length = 1366 Score = 1676 bits (4339), Expect = 0.0, Method: Composition-based stats. Identities = 714/1371 (52%), Positives = 984/1371 (71%), Gaps = 12/1371 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D+P L+ +Q SY +FL + ER GL AFKSV Sbjct: 1 MAYSYTEKKRIRKDFGKLPPVLDVPYLLAIQLESYRNFLQEGKSLAERGELGLHGAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ +FSG A LE+V Y P FDV +C R +TYA PL++ +RLI++D + K+I Sbjct: 61 FPMVSFSGNAALEYVDYRLGKPVFDVKECQLRGVTYAAPLRVRVRLIIYDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLL++ Sbjct: 119 KDIREQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLHSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L ALG +E+IL TF+ + + Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPATILLRALGYGTEQILDTFFDSTRFYLKR 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + L A + + G ++ D GE ++E G+++T+ ++ +++ G++ L + + Sbjct: 239 DGFEMDLVA-NRLRGETALFNIADA-NGELIVEEGRRITAKHIRVMEKSGLERLSVPLEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+++V+ TGE+ EA + LE + S I ++ LY + ++N +I +TL Sbjct: 297 MLGKVTAKNLVHPATGELIAEANTELSVDLLEALVSSGITEVDTLYTNDLDNGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE +F LFF D+YDLS VGR+K N RL Sbjct: 357 RIDPTSNQLEALVEIYRMMRPGEPPTKESAEGLFQGLFFSEDRYDLSGVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DI+A++K L+D+RNG G +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 417 EEDTGAGVLDNDDIVAVLKTLLDIRNGNGMVDDIDHLGNRRVRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + D +MPQDL+NAKPV +A+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVKERLSMAEADGLMPQDLLNAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+++AR N+YGF+ETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSTYARTNSYGFLETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RK+ DGK T++ VY+SA++E IAQA++++D +G +ELV R E L+P+EK++ Sbjct: 597 RKIVDGKQTDETVYVSAIDEAKYVIAQASANVDAEGRLVDELVQVRHMHETTLIPKEKVN 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTGME VAK Sbjct: 657 LMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKADKPVVGTGMEKNVAKD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG IVA R G++E VDA RIV+R + +GVDIY L K+ RSNQNTC+NQR LV Sbjct: 717 SGVCIVANRGGVIESVDASRIVVRVNSEETIAGEAGVDIYNLTKYVRSNQNTCINQRTLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ + DI+ADGPS D+G+LALG+NM +AFMPW+G+NFEDS+L+SER+V ED FTSI Sbjct: 777 MKGERIASGDIMADGPSVDMGELALGQNMRIAFMPWNGFNFEDSILVSERVVEEDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +D+ GI+ +GAEV PGDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEGALSKLDQSGIVYIGAEVEPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTS RV +G GTV+DV++F R GI+K++R+ +E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSQRVKTGTRGTVIDVQVFTRDGIEKDDRAKFIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I+++ + RL E L GQ A GP G ++ +++ + ++ +W+ Sbjct: 957 QLDQVRKDLNEEFRIVEKATFERLAEALIGQQAEGGP-GLARNAIITEEYLANLDHPEWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + V +E +E + + L+ +F++K K+Q GDD+ PGVL++VKV+VA+KR Sbjct: 1016 KIRVANEDASEQLEKAQAALIERRKELDAKFEDKKRKLQTGDDLAPGVLKIVKVYVAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I+P EDMP+ ++G PVDIVLNPLGVPSRMNVGQ+ ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISKIMPVEDMPYDENGDPVDIVLNPLGVPSRMNVGQVLETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGD-ISPLRSFLEKVIGTGS------HTEKISDYDDDSVLR 1195 A GLG+KI ++ + + ++ LRSFL ++ TE + + D+ +L Sbjct: 1136 AASKGLGRKINEMLVVEREKAEAVAELRSFLGEIYNGYEGDLRCARTEDLDSFTDEEILT 1195 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 +A GVP+++ FDGA E I MLR+A ++ESGQ L++G TG+ F+RPVTVGY+Y Sbjct: 1196 LASNLTGGVPMASGAFDGAKESEIKRMLRLAGINESGQVKLFNGRTGDAFERPVTVGYMY 1255 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEML Sbjct: 1256 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1315 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 T+KSDDV GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LEN Sbjct: 1316 TVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELENE 1366 >gi|54296358|ref|YP_122727.1| DNA-directed RNA polymerase subunit beta [Legionella pneumophila str. Paris] gi|81371224|sp|Q5X866|RPOB_LEGPA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|53750143|emb|CAH11535.1| RNA polymerase B-subunit [Legionella pneumophila str. Paris] Length = 1368 Score = 1675 bits (4338), Expect = 0.0, Method: Composition-based stats. Identities = 724/1364 (53%), Positives = 995/1364 (72%), Gaps = 5/1364 (0%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 R RK FGK +I+ IP+L+E+Q SY FL + E+ N GL AAF SVF Sbjct: 9 QYSHAEKKRFRKSFGKQTDIMPIPNLLEIQLKSYRDFLQTDTKLSEQLNTGLHAAFSSVF 68 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI +FSG A LE+V Y+ P FDV +C R LTY+ PL++ +RL+V D D K IK Sbjct: 69 PIESFSGNARLEYVGYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVLDKDASDDPKPIK 128 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 DI+EQ ++MG++PLMT GTFV+ G +R+VVSQLHRSPG+ F+HDKG+ SGKLLY+ R Sbjct: 129 DIREQDVFMGEIPLMTDVGTFVVNGTERVVVSQLHRSPGVIFEHDKGKTHSSGKLLYSAR 188 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD ++VRIDRRRK+PV+ L ALG ++E+ILS F+ + Sbjct: 189 IIPYRGSWLDFEFDPKDCVYVRIDRRRKLPVSILLRALGYEAEDILSEFFETTRCHLKNG 248 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + L L G S + +TGE ++E G+++T+ +K +++ ++ L + D L Sbjct: 249 EYHIDLIPQRL-RGEIASFDIHVPETGELIVEQGRRITARHIKQMEKSQMQDLVVPRDYL 307 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +A++I++ TGE +A D I E+ L+ + + I I ++Y + +++ +YI +TL Sbjct: 308 IGKTLAKNIIDTSTGEFLAQANDEITEELLDAMANHGILQIDMIYTNDLDHGSYISDTLK 367 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D + +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N R+ + Sbjct: 368 IDPTGSQLEALVEIYRMMRPGEPPTKEAAEALFKNLFFVEERYDLSAVGRMKFNRRVGIK 427 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 + + + KEDI+++IK L+D+RNG G +DDID+LGNRRVRSVGEM +NQ+R+GL+R+E Sbjct: 428 SDEGPGTLTKEDILSVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFRVGLVRVE 487 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R++KER+S V+ +++MPQDLINAKPV +A+ EFF SSQLSQ + VN LS +TH RR+SA Sbjct: 488 RAVKERLSLVESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVTHKRRVSA 547 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGFIETP R Sbjct: 548 LGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFIETPCR 607 Query: 604 KVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 KV +G+VT++V YLSA+EE ++YIAQ+N LD G+ +LV CR E L +KI++ Sbjct: 608 KVVNGRVTDEVEYLSAIEEVDQYIAQSNVELDAQGNILADLVPCRHQNEFSLTTPDKINY 667 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME +VA S Sbjct: 668 MDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERIVASDS 727 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 G ++VAKR G+++ VDA RIV+R + + +GVDIY L K+ RSNQ+TC+NQRP+V Sbjct: 728 GVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCINQRPIVS 787 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 GD ++R D++ADGP TD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V +D FT+IH Sbjct: 788 TGDRIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHDDRFTTIH 847 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 IEE +ARDTKLG EEIT DIPNV E L N+DE G++ +GAEV GDILVGK+TPKGE Sbjct: 848 IEELTCIARDTKLGTEEITADIPNVGESALSNLDESGVVYIGAEVKAGDILVGKVTPKGE 907 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 + +TPEEKLLRAIFGEKA DV+D+SLRVPSG++GTV+DV++F R G++K+ R+ S+E E Sbjct: 908 TQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARAKSIEEEH 967 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 + + +D DE+ I + +IY R+ +L + A GP K + ++ D + + R +W+ Sbjct: 968 LARVRKDLIDERRIREEDIYHRVSHLLLDKVATGGPGSLKPGSKITQDYLDKVEREKWFD 1027 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 ++D+ V + +E L Q E +E RF + +KI GDD+ PGVL++VKV++A+KR Sbjct: 1028 IRIEDDAVSQQLEQLSKQLELLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKVYLAVKRR 1087 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 IQ GDKMAGRHGNKG++S ++P EDMP ++DGT VDIVLNPLGVPSRMN+GQ+ ETHLG Sbjct: 1088 IQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQVLETHLGL 1147 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG+KI ++++ + I +++LEK+ G + +DD ++ +A+ ++ Sbjct: 1148 AAKGLGRKIAQMLDERQTPEAI---KAYLEKIYNHDGVQRVNLKCLNDDELMTLADNLRA 1204 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E+ I SML++ADL G+++L DG TG FD VTVGY+YMLKLNH+ Sbjct: 1205 GVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNTVTVGYMYMLKLNHL 1264 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1265 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1324 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ + G PESFNVL+KE++ALG+ I+LE+ Sbjct: 1325 GGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELEHD 1368 >gi|117924148|ref|YP_864765.1| DNA-directed RNA polymerase subunit beta [Magnetococcus sp. MC-1] gi|158512330|sp|A0L5W6|RPOB_MAGSM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|117607904|gb|ABK43359.1| DNA-directed RNA polymerase subunit beta [Magnetococcus sp. MC-1] Length = 1360 Score = 1674 bits (4334), Expect = 0.0, Method: Composition-based stats. Identities = 742/1365 (54%), Positives = 1017/1365 (74%), Gaps = 5/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + F R+RK FG+ IIDIP+LI VQK S+ FL ++ + GL F SV Sbjct: 1 MALTFTEKKRLRKNFGRISSIIDIPNLISVQKESFVRFLQTGTEFEKMKDTGLHGVFLSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++G LE+VSY PK+DVD+CL R +T++ PLK+ RL+++D +E TG K++ Sbjct: 61 FPIHDYAGTVSLEYVSYALGEPKYDVDECLQRGMTFSAPLKVAFRLVIWDENEETGTKTV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 ++IKEQ +Y+G++PLMT GTF+I G +R++VSQ+HRSPG+ FDHD+G+ SGKLL++ Sbjct: 121 REIKEQDVYLGEIPLMTNTGTFIINGTERVIVSQMHRSPGVFFDHDRGKTHSSGKLLFSA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ RIDRRRK+PVT+ L A+GM SE+IL FY + + G Sbjct: 181 RVIPYRGSWLDFEFDPKDLLFARIDRRRKLPVTTLLRAMGMSSEQILERFYEIETFRKEG 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 W + LM G +++ ++V ++GE+++++ K++T+ +K +E G+ +L ++ + Sbjct: 241 VVWQKRMVPERLM-GNRLNYAIVHPESGEEIVKAKKRVTARHIKKFEELGMDWLPVSQEE 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +VA ++ + GE+ IEAG I E+ ++ + I++I +L++D ++ AY+RNTL Sbjct: 300 LIGSFVARNMSDVM-GEVVIEAGAEITEEMVQYLEDGGIKEIDVLFIDGMSVGAYLRNTL 358 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DKN + +AL+DIYR+MRPG+ T A+++FN LFF+SD+YDLSTVGR+KMN RL+L Sbjct: 359 ALDKNSGQDEALIDIYRMMRPGEPPTVDAAKALFNNLFFNSDRYDLSTVGRLKMNSRLSL 418 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 +T +R ++ +DI+ ++ IL+ L++G G +DDID+LGNRRVRSVGE+L+NQ R+GL+RM Sbjct: 419 NTELHIRTLQHDDILGVVDILLKLKDGHGKVDDIDHLGNRRVRSVGELLENQVRIGLVRM 478 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+I+ER+SS + D ++P D++N+KP + + EFF SSQLSQ + N LS ITH RRLS Sbjct: 479 ERAIRERMSSAEADQLVPHDVMNSKPFSAVIREFFGSSQLSQFMDQTNPLSEITHKRRLS 538 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL+++AR+N +GFIE+PY Sbjct: 539 ALGPGGMTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYARINEFGFIESPY 598 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G + V +LSA++EEN IAQAN+ L ++ S + L+ CR E ++ ++++ Sbjct: 599 RQVKEGTPIDQVDFLSAIDEENYIIAQANAKLGDEASEEDALIQCRHKLEFMVATPDRVN 658 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 + D SPKQ VS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +AP VGTG+ESVVA+ Sbjct: 659 YQDVSPKQTVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPLVGTGIESVVARD 718 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG I A+R G+V++VDA RIV+++ E + GVDIY L KF RSNQNTC+NQ PLV Sbjct: 719 SGVTITARRTGVVDEVDAARIVVKADEEPG-STEPGVDIYNLTKFSRSNQNTCINQVPLV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K G+ V DIIADGPST +G+LALGRN+LVAFMPW+GYNFEDS+LISER+V+EDVFTSI Sbjct: 778 KNGERVTAGDIIADGPSTQIGELALGRNVLVAFMPWNGYNFEDSILISERLVAEDVFTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+EFEVMARDTKLG EEITRD+PNV E+ L+N+DE GII VGAEV PGDILVGK+TPKG Sbjct: 838 HIDEFEVMARDTKLGAEEITRDMPNVGEDALRNLDESGIIYVGAEVKPGDILVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DVRDTSLR+P GV+GTVVDVR+F+R G++K++R+ ++++ Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVDVRVFSRRGLEKDDRAKLIDQD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +I LL +D E+ I++R+ R+ ++ G+ S P G + +S + + P S Sbjct: 958 EIALLRKDMAAERRIIERDADERIRNLMNGKPVRSAP-GLQPGDHISQSWLDKSPSSHLR 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D+ + + +E ++ E + L+ RF++K+EK++ GDD+PPGVL++VKV++A+KR Sbjct: 1017 DVVLDDDAITQQIEGIRHHVEKAADRLKKRFESKVEKLERGDDLPPGVLKMVKVYIAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++S+I P EDMP++ +GTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1077 KLQPGDKMAGRHGNKGVISKINPLEDMPYMANGTPVDIVLNPLGVPSRMNVGQILETHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA G+G KI+ + ++ LR E++ + +I+ DD ++ +A+ + Sbjct: 1137 WAARGMGFKIEEALKQHRKGV-ADVLRRQFEEIYDNTRESAEIAALSDDQLVDMAKNLQY 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP +TPVFDGA E I+S L A L SGQ L DG TGEPFDR VTVGYIYMLKL+H+ Sbjct: 1196 GVPTATPVFDGAIESDISSWLNKAGLPTSGQIQLIDGRTGEPFDRHVTVGYIYMLKLHHL 1255 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1256 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 GRT++YESIV G+DTFE G PESFNVLVKE+QAL L + L+ Sbjct: 1316 AGRTKIYESIVKGDDTFEAGVPESFNVLVKELQALALDVTLQRDD 1360 >gi|87122756|ref|ZP_01078630.1| DNA-directed RNA polymerase beta subunit [Marinomonas sp. MED121] gi|86161984|gb|EAQ63275.1| DNA-directed RNA polymerase beta subunit [Marinomonas sp. MED121] Length = 1366 Score = 1674 bits (4334), Expect = 0.0, Method: Composition-based stats. Identities = 722/1369 (52%), Positives = 991/1369 (72%), Gaps = 12/1369 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D+P L+ +Q SY +FL ER + GL AFKSV Sbjct: 1 MAYSYTERKRIRKDFGKLPPVLDVPYLLAIQLESYRNFLQEGKPLAERGDLGLHGAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ +FSG A LE+V Y P FDV +C R +TYA PL++ +RLI++D + K+I Sbjct: 61 FPMVSFSGNAALEYVDYRLGKPVFDVKECQLRGVTYAAPLRVRVRLIIYDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGKLL++ Sbjct: 119 KDIREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLHSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+PVT L ALG ++E+IL TF+ + Sbjct: 179 RVIPYRGSWLDFEFDPKDCVFVRIDRRRKLPVTILLRALGYNTEQILETFFETTKFYLGR 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + L A + + G ++ D + G+ ++E G+++T+ ++++ + GV+ L + + Sbjct: 239 DGFEMELIA-NRLRGETAMFNITDTE-GKVIVEEGRRVTAKHIRAMDKAGVERLSVPLEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A ++V+ TG + EA + + LE + + I++I LY + +++ +I +TL Sbjct: 297 MLGKVTATNLVDSATGALISEANTELTVELLEALVAAGIKEIETLYTNDLDHGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +AL++IYR+MRPG+ T AE +F LFF D+YDLS VGR+K N RL Sbjct: 357 RIDPTNNPLEALVEIYRMMRPGEPPTKESAEGLFQGLFFTEDRYDLSGVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + +DI+A++K L+D+RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 417 DEDTGAGILDNDDIVAVLKTLLDIRNGNGMVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + D +MPQDL+NAKPV +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSMAEADGLMPQDLLNAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+++AR N+YGF+ETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSTYARTNSYGFLETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGK+T++ VY+SA++E IAQA+ +DE+G T+ELV R E L+ +EK++ Sbjct: 597 RKVVDGKMTDETVYVSAIDEAKYVIAQASVKVDEEGRLTDELVQVRHMHETTLIQKEKVN 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTGME VAK Sbjct: 657 LMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKADKPVVGTGMERNVAKD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG IVA+R G++E VDA RIV+R + +GVDIY L K+ RSNQNTC+NQR LV Sbjct: 717 SGVCIVARRGGVIEAVDASRIVVRVNSEETLAGEAGVDIYNLTKYVRSNQNTCINQRTLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V DI+ADGPS D+G+LALG+NM +AFMPW+G+NFEDS+L+SER+V ED FTSI Sbjct: 777 MKGENVASGDIMADGPSVDMGELALGQNMRIAFMPWNGFNFEDSILVSERVVEEDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +D+ GI+ +GAEV PGDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEITADIPNVGEGALSKLDQSGIVYIGAEVEPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTS RV +G GTV+DV++F R GIDK+ER+ S+E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSQRVKTGTRGTVIDVQVFTRDGIDKDERAKSIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I+++ + RL E L GQ GP G K++++S+D + S+W+ Sbjct: 957 QLDQVRKDLNEEFRIVEQATFERLAEALVGQTVEGGP-GLAKNSIISADYLEALEHSEWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + V DE +E + + L+ +F++K K+Q GDD+ PGVL++VKV+VA+KR Sbjct: 1016 KIRVVDETASEQLEKAQAALVERRKDLDAKFEDKKRKLQSGDDLAPGVLKIVKVYVAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I+P EDMP+ ++G PVDIVLNPLGVPSRMNVGQ+ ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISKIMPVEDMPYDENGDPVDIVLNPLGVPSRMNVGQVLETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGD-ISPLRSFLEKVIGTGS------HTEKISDYDDDSVLR 1195 A GLG+KI ++ + + ++ LR+FL++V +E++ + DD ++ Sbjct: 1136 AASKGLGRKINEMLEVEREKAEHVAELRTFLDEVYNGHEGGVQCARSEELDSFSDDEIME 1195 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 +A K G+P+++ FDGA E I MLR+A ++ESGQ L++G TGE F+RPVTVGY+Y Sbjct: 1196 LAANLKGGIPMASGAFDGAKESEIKRMLRLAGINESGQIKLFNGRTGESFERPVTVGYMY 1255 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEML Sbjct: 1256 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1315 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 T+KSDDV GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LE Sbjct: 1316 TVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELE 1364 >gi|161505364|ref|YP_001572476.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866711|gb|ABX23334.1| hypothetical protein SARI_03509 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|322717103|gb|EFZ08674.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 1380 Score = 1674 bits (4334), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 39 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 94 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 95 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 152 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 153 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 212 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 213 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 272 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 273 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 329 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V++D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 330 IAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 389 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 390 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 449 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 450 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 509 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 510 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 569 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 570 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 629 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 630 RRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 689 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 690 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 749 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 750 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 809 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 810 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 869 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 870 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 929 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 930 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 989 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 990 QLKQAKKDLSEELQILEAGLFSRIRAVLVSGGV-------------EAEKLDKLPRDRWL 1036 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1037 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1096 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1097 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1156 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + DD VLR+AE + Sbjct: 1157 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRK 1216 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1217 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1276 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1277 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1336 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1337 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1380 >gi|326386255|ref|ZP_08207879.1| DNA-directed RNA polymerase subunit beta [Novosphingobium nitrogenifigens DSM 19370] gi|326209480|gb|EGD60273.1| DNA-directed RNA polymerase subunit beta [Novosphingobium nitrogenifigens DSM 19370] Length = 1391 Score = 1673 bits (4332), Expect = 0.0, Method: Composition-based stats. Identities = 811/1383 (58%), Positives = 1058/1383 (76%), Gaps = 17/1383 (1%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG E++ +P+LIEVQ+ SY+ FL + P GL+ +SVFPI F+ Sbjct: 16 KKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSD--PATGYVSGLEKTLRSVFPIQDFA 73 Query: 70 GAAMLEFV---SYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIK 126 G A L+ Y + PK+DV++C R +TYA P+K+TL+L F+VD T KS+ DIK Sbjct: 74 GTASLDIKEKDGYVLEAPKYDVNECRQRGITYAAPMKVTLKLATFEVDAETETKSLIDIK 133 Query: 127 EQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIP 186 EQ +YMGD+PLMT +GTF I G +R++VSQ+HRSPG+ FDHD+G+ SGK L+A R+IP Sbjct: 134 EQDVYMGDIPLMTDNGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFAARVIP 193 Query: 187 DQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWC 246 +G W+D EFD+KDI++VRIDR+RK+PVTS L ALG++ E+IL FY K+ + + W Sbjct: 194 YRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYALGLNGEQILDHFYSKVTWVRADGGWR 253 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 P D G K + +VD +GE + +G+K++ + G+++L I ++ + G Sbjct: 254 VPFV-LDQWRGVKPTFDIVDAKSGEVIFPAGQKISPRSANKAAKDGLEYLLIPTEEIFGR 312 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDK 366 + A D+++ TG I+IEAGD + ++L+ + + + +L +D V +IRNT+ DK Sbjct: 313 FSALDLIDETTGRIWIEAGDEVTPENLDVLDQVGVDRLELLDIDHVTTGPWIRNTMKADK 372 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 +DR AL DIYRVMRPG+ T AE++F+ LFFD+D+YDLS VGRVK+NMRL LD D Sbjct: 373 AEDRDHALADIYRVMRPGEPPTRETAEALFDGLFFDNDRYDLSAVGRVKLNMRLGLDCAD 432 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 + +R +DI+A++K LV+L++GKG +DDIDNLGNRRVRSVGE+L+NQYR+GLLRMER++ Sbjct: 433 TITTLRTDDILAVVKELVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAV 492 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 KER+SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH RR+SALG Sbjct: 493 KERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGP 552 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL++FARVN YGFIETPYRKV Sbjct: 553 GGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETPYRKVI 612 Query: 607 DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 DGKVT DVVYLSAMEE+ +AQA+++++EDGSF EEL+ R GE ++ PR+ + +D Sbjct: 613 DGKVTRDVVYLSAMEEQKHTVAQASAAVNEDGSFVEELISARQNGEFVMAPRDTVTLMDV 672 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPL+KA+APFVGTGME VA+ SGAA Sbjct: 673 SPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKADAPFVGTGMEETVARDSGAA 732 Query: 727 IVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGD 786 I A R GIV+QVDA RIVIR+ GD++P SGVDIY L KFQRSNQNTC+NQRPLVKVGD Sbjct: 733 IAALRGGIVDQVDATRIVIRAA-GDIEPGQSGVDIYTLQKFQRSNQNTCINQRPLVKVGD 791 Query: 787 EVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEE 846 V + DI+ADGPSTDLG+LALGRN+LVAFMPW+GYN+EDS+LISER+V +DVFTSIHIEE Sbjct: 792 MVEKGDILADGPSTDLGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIEE 851 Query: 847 FEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPM 906 FEVMARDTKLGPE+ITRDIPNV EE L+N+DE GI+ +GAEV+PGDILVGKITPKGESPM Sbjct: 852 FEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILVGKITPKGESPM 911 Query: 907 TPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 TPEEKLLRAIFGEKA DVRDTSLR+P GV+GT+V+VR+FNRHGI+ ++R+ +++ E+IE Sbjct: 912 TPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGIEIDDRTRAIQAEEIER 971 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 LA+D++DE+ IL+R ++RL ++L GQ A + PKG KK + ++ + R +WW+FAV Sbjct: 972 LAKDREDERAILNRATFNRLRDMLIGQVAAAAPKGIKKGVEIDEQVLGDVERHEWWKFAV 1031 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 D+ Q +E++K QY+ + ++++F+++ K++ GD++ PGVL++VKVFVA+KR +Q Sbjct: 1032 ADDARQAQLEAVKQQYDATVKAIQEKFEDRKAKLEAGDELAPGVLKMVKVFVAVKRKLQP 1091 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG++SRILP EDMPFL DGT VDIVLNPLGVPSRMNVGQIFETHLGWA Sbjct: 1092 GDKMAGRHGNKGVISRILPIEDMPFLDDGTHVDIVLNPLGVPSRMNVGQIFETHLGWAAR 1151 Query: 1147 GLGKKIKSLINDYK-------ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 GLG++IK + D++ A + L L+ + G ++ I + ++ +AE Sbjct: 1152 GLGQQIKHALEDWRIANPDPQAAQPPAALIEKLKDIYG-ENYYADIESRTTNEIIELAEN 1210 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 K+GVP+ TPVFDGA E +++ML A SGQ+ L+DG TGE FDR VTVG IYMLKL Sbjct: 1211 LKAGVPMGTPVFDGAREPDVSAMLAKAGYHTSGQTTLFDGRTGEAFDRKVTVGIIYMLKL 1270 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEMLT+KS Sbjct: 1271 HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKS 1330 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 DDVVGRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L + +++P+ Sbjct: 1331 DDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSHDEGEED--DDLPE 1388 Query: 1380 FNK 1382 + Sbjct: 1389 AAE 1391 >gi|82701892|ref|YP_411458.1| DNA-directed RNA polymerase subunit beta [Nitrosospira multiformis ATCC 25196] gi|109904478|sp|Q2YB05|RPOB_NITMU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|82409957|gb|ABB74066.1| DNA-directed RNA polymerase subunit beta [Nitrosospira multiformis ATCC 25196] Length = 1357 Score = 1672 bits (4330), Expect = 0.0, Method: Composition-based stats. Identities = 710/1363 (52%), Positives = 956/1363 (70%), Gaps = 7/1363 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++ IP L+ Q SY FL N+ PD+R EGLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRASVLPIPFLLATQIESYAAFLQANLEPDQRAPEGLQAAFLSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + S A L+FV+Y P FDV +C R LTYA PL+ +RL + D ++ Sbjct: 61 FPIESHSRNARLDFVNYVLGAPPFDVKECQQRGLTYASPLRAKVRLTIMDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 REVKEQEVYMGEIPLMTNTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ R+DRRRK+P+T L A+G E+IL F+ + Sbjct: 179 RIIPYRGSWLDFEFDPKDYLYFRVDRRRKMPITVLLKAIGYTPEQILENFFSFDSFHISR 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 F L L G ++ +G+ +++ K++T ++ +++ G+ L + D Sbjct: 239 KSILFELLPERL-RGDTARFDILS-KSGKVIVQKDKRITVKHVREMQQAGIDRLEVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G + ++V+ ETGEI A D I E L ++ + + +I +Y + ++ AYI TL Sbjct: 297 LLGRVLGHNVVDKETGEILALANDEITETLLGKLRDANVEEIRTIYTNDLDQGAYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D A + IYR+MRPG+ T +++F LF+ ++YDLS VGR+K N R+ Sbjct: 357 KIDETADEMAAQVAIYRMMRPGEPPTEEAVKALFIGLFYAPERYDLSVVGRMKFNRRVGK 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + EDIIA+I+ILV+LRNG+G IDDID+LGNRRVRSVGE+ +NQ+R GL+R+ Sbjct: 417 TELDGPTTLSNEDIIAVIRILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRSGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + +++MP DLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSQAESENLMPHDLINAKPVSAAVREFFGSSQLSQFMDQTNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A+ N YGF+ETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQTNEYGFMETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ +LSA+EE IAQAN+ LD DG FT ++V CR E L ++I+ Sbjct: 597 RKVTDGLVTDEIHFLSAIEEGQYVIAQANAELDGDGRFTNDIVSCRHKNEFTLATPDRIE 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+AE P VGTG+E VVA Sbjct: 657 YMDVAPAQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKPLVGTGIERVVAVD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG A+ A R G+V+ VDA RIV+R + + GVDIY L K+ RSNQNT +NQRPLV Sbjct: 717 SGTAVKAVRGGVVDYVDASRIVVRVHDIETRAGEVGVDIYNLTKYTRSNQNTNINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD + R D++ADG STD G+LALG+NMLVAFMPW GYNFEDS+LISER+V+ D FTSI Sbjct: 777 KVGDVIARGDVVADGASTDKGELALGQNMLVAFMPWTGYNFEDSILISERIVANDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V++RDTKLG EEIT DI N+SE L +D GI+ +GAEV GD+LVGK+TPKG Sbjct: 837 HIEELSVVSRDTKLGTEEITGDISNLSEAQLGRLDASGIVHIGAEVEAGDVLVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI++++R+ + + Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGISGTVIDVQVFTREGIERDKRAQQIIDD 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ +D D+ I++ + + R+ +L G+ A GPK K L+ + + W+ Sbjct: 957 ELKRYKKDLADQMRIVEADAFVRIERLLIGKIATGGPKKLAKGATLTKEYLESIDPHHWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE +E ++ + + F+ K +K+ GD++PPGV ++VKV+VA+KR Sbjct: 1017 DIRLADEGASVQLEQIEEGLAQKRKAFDAAFEEKKKKLTQGDELPPGVQKMVKVYVAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++S+I+P EDMP++ DGTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1077 RLQPGDKMAGRHGNKGVISKIVPVEDMPYMADGTPVDVVLNPLGVPSRMNVGQILETHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG+KI ++ +A +I LR+FL+K+ T E I+ D + +A+ + Sbjct: 1137 WAAKGLGQKIGDML---RAGKEIVELRAFLDKIYNTSGKPEDIASLTDGEIADLAQNLQD 1193 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP +TPVFDGA E+ I ML +A L SGQ L+DG TGE FDRPVTVGY+++LKL+H+ Sbjct: 1194 GVPFATPVFDGATEQEIKDMLELAGLPRSGQVTLHDGRTGEAFDRPVTVGYMHVLKLHHL 1253 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG+AY LQEMLT+KSDDV Sbjct: 1254 VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGSAYTLQEMLTVKSDDV 1313 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 GRT+VYESIV G+ + G PESFNVLVKE+++L + IDLE Sbjct: 1314 NGRTKVYESIVKGDHKIDAGMPESFNVLVKEIRSLAMDIDLER 1356 >gi|16767407|ref|NP_463022.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|19855075|sp|P06173|RPOB_SALTY RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|6960339|gb|AAF33499.1| Salmonella typhimurium DNA-directed RNA polymerase, beta-subunit (RPOB) (SW:P06173) contains similarity to Pfam domain PF00562 (RNA_pol_B), Score=1088, E=0, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422711|gb|AAL22981.1| RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|226358457|gb|ACO51091.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|226358459|gb|ACO51092.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|226358461|gb|ACO51093.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|226358463|gb|ACO51094.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|261249257|emb|CBG27119.1| DNA-directed RNA polymerase, beta-subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996451|gb|ACY91336.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160649|emb|CBW20180.1| DNA-directed RNA polymerase, beta-subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915258|dbj|BAJ39232.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223353|gb|EFX48420.1| DNA-directed RNA polymerase beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132488|gb|ADX19918.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 1342 Score = 1672 bits (4330), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V++D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVSSGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + DD VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|29143788|ref|NP_807130.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415980|ref|YP_153055.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161617291|ref|YP_001591256.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168264592|ref|ZP_02686565.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467915|ref|ZP_02701752.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444496|ref|YP_002043405.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450538|ref|YP_002048140.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470339|ref|ZP_03076323.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737028|ref|YP_002117056.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251068|ref|YP_002149064.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264694|ref|ZP_03164768.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364907|ref|YP_002144544.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242604|ref|YP_002218070.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387162|ref|ZP_03213774.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931265|ref|ZP_03222025.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207859331|ref|YP_002245982.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213650888|ref|ZP_03380941.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224585695|ref|YP_002639494.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913732|ref|ZP_04657569.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289826713|ref|ZP_06545678.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|81361175|sp|Q5PK93|RPOB_SALPA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|182676589|sp|A9MHF1|RPOB_SALAR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|189043866|sp|A9N0J4|RPOB_SALPB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699439|sp|B5F0W7|RPOB_SALA4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699440|sp|B5FQJ9|RPOB_SALDC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699441|sp|B5QYD8|RPOB_SALEP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699443|sp|B4TCS4|RPOB_SALHS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699444|sp|B4T0Y9|RPOB_SALNS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699445|sp|B5BJQ3|RPOB_SALPK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699446|sp|B4TQJ5|RPOB_SALSV RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765302|sp|C0Q2R7|RPOB_SALPC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|29139423|gb|AAO70990.1| DNA-directed RNA polymerase, beta-subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130237|gb|AAV79743.1| DNA-directed RNA polymerase, beta-subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161366655|gb|ABX70423.1| hypothetical protein SPAB_05142 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403159|gb|ACF63381.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408842|gb|ACF69061.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456703|gb|EDX45542.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712530|gb|ACF91751.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195629014|gb|EDX48406.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096384|emb|CAR61989.1| DNA-directed RNA polymerase, beta-subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214771|gb|ACH52168.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242949|gb|EDY25569.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197937120|gb|ACH74453.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604260|gb|EDZ02805.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204319880|gb|EDZ05087.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205346980|gb|EDZ33611.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711134|emb|CAR35508.1| DNA-directed RNA polymerase, beta-subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470223|gb|ACN48053.1| DNA-directed RNA polymerase beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|226358423|gb|ACO51074.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Enteritidis] gi|226358425|gb|ACO51075.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Enteritidis] gi|226358427|gb|ACO51076.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Enteritidis] gi|226358429|gb|ACO51077.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Enteritidis] gi|226358431|gb|ACO51078.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Enteritidis] gi|320088584|emb|CBY98343.1| DNA-directed RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322616263|gb|EFY13173.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617294|gb|EFY14196.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625934|gb|EFY22749.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626668|gb|EFY23470.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631503|gb|EFY28260.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635216|gb|EFY31934.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642617|gb|EFY39211.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646790|gb|EFY43294.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650789|gb|EFY47182.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655912|gb|EFY52213.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657311|gb|EFY53590.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665573|gb|EFY61758.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669756|gb|EFY65901.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670965|gb|EFY67097.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679211|gb|EFY75264.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679369|gb|EFY75416.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322688136|gb|EFY84100.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193404|gb|EFZ78614.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200676|gb|EFZ85749.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202165|gb|EFZ87221.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209276|gb|EFZ94211.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211601|gb|EFZ96438.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218061|gb|EGA02774.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221350|gb|EGA05772.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225723|gb|EGA09944.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230989|gb|EGA15106.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235771|gb|EGA19853.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240085|gb|EGA24131.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242582|gb|EGA26604.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249710|gb|EGA33617.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252593|gb|EGA36434.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256913|gb|EGA40625.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262065|gb|EGA45629.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323263930|gb|EGA47444.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268457|gb|EGA51927.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625863|gb|EGE32208.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 1342 Score = 1672 bits (4329), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V++D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + DD VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|283836723|ref|ZP_06356464.1| DNA-directed RNA polymerase, beta subunit [Citrobacter youngae ATCC 29220] gi|291067270|gb|EFE05379.1| DNA-directed RNA polymerase, beta subunit [Citrobacter youngae ATCC 29220] Length = 1342 Score = 1672 bits (4329), Expect = 0.0, Method: Composition-based stats. Identities = 714/1364 (52%), Positives = 966/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVAAKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIYAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE K Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGSDVRQKVDLNTFSDEEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|296100615|ref|YP_003610761.1| DNA-directed RNA polymerase subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055074|gb|ADF59812.1| DNA-directed RNA polymerase subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1342 Score = 1672 bits (4329), Expect = 0.0, Method: Composition-based stats. Identities = 712/1364 (52%), Positives = 967/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ADGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A + L ++ + + I L+ + +++ YI T+ Sbjct: 292 IAGKVAAKDYVDESTGELICPANMELSLDLLAKLSQAGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIYAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGTDVRQKVDLNTFSDEEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLQLGGLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|237727879|ref|ZP_04558360.1| DNA-directed RNA polymerase subunit beta [Citrobacter sp. 30_2] gi|226910436|gb|EEH96354.1| DNA-directed RNA polymerase subunit beta [Citrobacter sp. 30_2] Length = 1342 Score = 1672 bits (4329), Expect = 0.0, Method: Composition-based stats. Identities = 713/1364 (52%), Positives = 966/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVAAKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIYAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE K Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGSDVRQKVDLNTFSDEEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|295095127|emb|CBK84217.1| DNA-directed RNA polymerase subunit beta [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 1342 Score = 1671 bits (4328), Expect = 0.0, Method: Composition-based stats. Identities = 713/1364 (52%), Positives = 967/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ADGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVAAKDYVDESTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIYAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGTDVRQKVDLNTFSDEEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLQLGGLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|205354444|ref|YP_002228245.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226699442|sp|B5RFK1|RPOB_SALG2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|205274225|emb|CAR39244.1| DNA-directed RNA polymerase, beta-subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226358433|gb|ACO51079.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Gallinarum] gi|226358435|gb|ACO51080.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Gallinarum] gi|226358437|gb|ACO51081.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Gallinarum] gi|226358439|gb|ACO51082.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Gallinarum] gi|226358441|gb|ACO51083.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Gallinarum] gi|226358443|gb|ACO51084.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Gallinarum] gi|226358445|gb|ACO51085.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Gallinarum] gi|326629577|gb|EGE35920.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 1342 Score = 1671 bits (4328), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQC----GLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V++D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITKGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + DD VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|62182607|ref|YP_219024.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130240|gb|AAX67943.1| RNA polymerase, beta subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 1380 Score = 1671 bits (4328), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 39 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 94 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 95 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 152 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 153 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 212 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 213 RIIPYRGSWLDFEFDLKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 272 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 273 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 329 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V++D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 330 IAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 389 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 390 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 449 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 450 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 509 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 510 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 569 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 570 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 629 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 630 RRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 689 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 690 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 749 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 750 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 809 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 810 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 869 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 870 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 929 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 930 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 989 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 990 QLKQAKKDLSEELQILEAGLFSRIRAVLVSGGV-------------EAEKLDKLPRDRWL 1036 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1037 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1096 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1097 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1156 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + DD VLR+AE + Sbjct: 1157 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRK 1216 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1217 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1276 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1277 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1336 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1337 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1380 >gi|226358447|gb|ACO51086.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Pullorum] gi|226358449|gb|ACO51087.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Pullorum] gi|226358451|gb|ACO51088.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Pullorum] gi|226358453|gb|ACO51089.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Pullorum] gi|226358455|gb|ACO51090.1| RNA polymerase beta-subunit [Salmonella enterica subsp. enterica serovar Pullorum] Length = 1342 Score = 1671 bits (4328), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDYIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V++D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + DD VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|87198050|ref|YP_495307.1| DNA-directed RNA polymerase subunit beta [Novosphingobium aromaticivorans DSM 12444] gi|109904495|sp|Q2GCD7|RPOB_NOVAD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|87133731|gb|ABD24473.1| DNA-directed RNA polymerase subunit beta [Novosphingobium aromaticivorans DSM 12444] Length = 1392 Score = 1671 bits (4328), Expect = 0.0, Method: Composition-based stats. Identities = 810/1364 (59%), Positives = 1056/1364 (77%), Gaps = 15/1364 (1%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG E++ +P+LIEVQ+ SY+ FL + P GL+ +SVFPI F+ Sbjct: 17 KKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSD--PATGYVSGLEKTLRSVFPIQDFA 74 Query: 70 GAAMLEFV---SYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIK 126 G A L+ Y + PK+DV++C R +TYA P+K+TL+L F+VD T KS+ DIK Sbjct: 75 GTASLDIKEKDGYVLESPKYDVNECRQRGITYAAPMKVTLKLATFEVDAETETKSLIDIK 134 Query: 127 EQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIP 186 EQ +YMGD+PLMT++GTF I G +R++VSQ+HRSPG+ FDHD+G+ SGK L+A R+IP Sbjct: 135 EQDVYMGDIPLMTENGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFAARVIP 194 Query: 187 DQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWC 246 +G W+D EFD+KDI++VRIDR+RK+PVT+ L ALG+ E+IL FY + +++ W Sbjct: 195 YRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLGDEDILHHFYDTVTWARAEGGWK 254 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 P + G+K + +VD +GE + +G+K++ + G++ L I ++ + G Sbjct: 255 VPFV-LEQWRGSKPAFDIVDAKSGEVIFPAGQKISPRAANKAAKDGLEALLIPTEEIFGR 313 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDK 366 Y A D+++ TG I+IEAGD + ++L+ + + I ++ +L +D ++ +IRNTL DK Sbjct: 314 YAARDLIDESTGRIWIEAGDEVSPENLDLLDKAGIDNLDLLDIDHISTGPWIRNTLKADK 373 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 DR AL DIYRVMRPG+ T AE++F+ LFFD D+YDLS VGRVK+NMRL LD PD Sbjct: 374 APDRDHALADIYRVMRPGEPPTRETAEALFDGLFFDGDRYDLSAVGRVKLNMRLGLDCPD 433 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 V +R +DI+A++K LV+L++GKG +DDIDNLGNRRVRSVGE+L+NQYR+GLLRMER++ Sbjct: 434 TVTTLRTDDILAVVKELVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAV 493 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 KER+SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH RR+SALG Sbjct: 494 KERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGP 553 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL++FARVN YGFIETPYRKV Sbjct: 554 GGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETPYRKVV 613 Query: 607 DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 DGKVT DV+YLSAMEE+ +AQA++ L DGSF EELV R GE ++ PR+ + +D Sbjct: 614 DGKVTKDVIYLSAMEEQKHTVAQASAELTADGSFVEELVSARQNGEFVMAPRDTVTLMDV 673 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPL+KA+APFVGTGME VA+ SGAA Sbjct: 674 SPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKADAPFVGTGMEETVARDSGAA 733 Query: 727 IVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGD 786 I A R+G+V+QVDA RIVIR+ GD++P SGVDIYRL KF+RSNQ+TC+NQRPLVKVGD Sbjct: 734 ISALRSGVVDQVDATRIVIRA-SGDIEPGQSGVDIYRLQKFERSNQSTCINQRPLVKVGD 792 Query: 787 EVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEE 846 + + DIIADGPST+ G+LALGRN+LVAFMPW+GYN+EDS+LISER+V EDVFTSIHIEE Sbjct: 793 LIEKGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKEDVFTSIHIEE 852 Query: 847 FEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPM 906 FEVMARDTKLGPE+ITRDIPNV EE L+N+DE GI+ +GAEV+PGDILVGKITPKGESPM Sbjct: 853 FEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILVGKITPKGESPM 912 Query: 907 TPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 TPEEKLLRAIFGEKA DVRDTSLR+P GV+GT+VDVR+FNRHGI+ ++R+ +++ E+IE Sbjct: 913 TPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIEIDDRTRAIQNEEIER 972 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 LA+D++DE+ IL+R ++RL ++L GQ A + PKG KK + ++++ R +WW+FAV Sbjct: 973 LAKDREDERAILNRATFNRLKDMLLGQVAAAAPKGIKKGVEIDEQVLADVERHEWWKFAV 1032 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 D+ Q+ +E++K QY+T+ ++++F+++ EK++ GD++ PGVL++VKVFVA+KR +Q Sbjct: 1033 ADDARQQQLEAVKAQYDTAVKAIQEKFEDRKEKLERGDELAPGVLKMVKVFVAVKRKLQP 1092 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKGI+SRILP EDMPFL+DGTPVD VLNPLGVPSRMNVGQIFETHLGWA Sbjct: 1093 GDKMAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLGWAAR 1152 Query: 1147 GLGKKIKSLINDYKANGDISP-------LRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 GLGK+I ++ ++ +R L+++ G E I +D+ ++ A+ Sbjct: 1153 GLGKRIGEALDAWREANPNPEAGQPPEAVRELLKEIYGDNYAAE-IDARNDEQIIDFAQS 1211 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + GVP+ +PVFDGA E+ + MLR+A LDESGQ L+DG TG+ FDR VTVG Y+LKL Sbjct: 1212 VRLGVPMGSPVFDGAVEKDVTDMLRLAGLDESGQVTLFDGRTGDAFDRKVTVGMKYVLKL 1271 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEMLT+KS Sbjct: 1272 HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKS 1331 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 DDVVGRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L Sbjct: 1332 DDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1375 >gi|47919|emb|CAA28302.1| unnamed protein product [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 1342 Score = 1671 bits (4327), Expect = 0.0, Method: Composition-based stats. Identities = 714/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V++D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R AG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRELAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVSSGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + DD VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|170770127|ref|ZP_02904580.1| DNA-directed RNA polymerase, beta subunit [Escherichia albertii TW07627] gi|170121009|gb|EDS89940.1| DNA-directed RNA polymerase, beta subunit [Escherichia albertii TW07627] Length = 1342 Score = 1671 bits (4327), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGRFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|315300752|gb|EFU59977.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 16-3] Length = 1353 Score = 1671 bits (4327), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 12 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 67 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 68 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 125 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 126 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 185 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 186 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 245 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 246 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 302 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 303 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 362 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 363 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 422 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 423 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 482 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 483 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 542 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 543 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 602 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 603 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 662 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 663 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 722 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 723 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 782 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 783 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 842 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 843 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 902 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 903 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 962 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 963 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 1009 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1010 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1069 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1070 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1129 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1130 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1189 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1190 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLYDGRTGEQFERPVTVGYMYMLKLNHL 1249 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1250 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1309 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1310 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1353 >gi|331660546|ref|ZP_08361479.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli TA206] gi|331052329|gb|EGI24367.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli TA206] Length = 1342 Score = 1670 bits (4326), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|270160336|ref|ZP_06188989.1| DNA-directed RNA polymerase beta subunit [Legionella longbeachae D-4968] gi|289163823|ref|YP_003453961.1| RNA polymerase B-subunit [Legionella longbeachae NSW150] gi|269987148|gb|EEZ93406.1| DNA-directed RNA polymerase beta subunit [Legionella longbeachae D-4968] gi|288856996|emb|CBJ10810.1| RNA polymerase B-subunit [Legionella longbeachae NSW150] Length = 1368 Score = 1670 bits (4326), Expect = 0.0, Method: Composition-based stats. Identities = 723/1364 (53%), Positives = 993/1364 (72%), Gaps = 5/1364 (0%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 R RK FGK + + IP+L+E+Q SY FL + +E N GL AAF SVF Sbjct: 9 QYSHAEKKRFRKSFGKQADKMAIPNLLEIQLKSYRDFLQADSKANEHFNTGLHAAFSSVF 68 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI +FSG A LE+V Y+ P FDV +C R LTY+ PL++ +RL++ D D K IK Sbjct: 69 PIDSFSGNARLEYVGYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVILDKDASEDPKPIK 128 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 DI+EQ ++MG++PLMT GTFVI G +R+VVSQLHRSPG+ F+HDKG+ SGKLLY+ R Sbjct: 129 DIREQDVFMGEIPLMTDVGTFVINGTERVVVSQLHRSPGVIFEHDKGKTHSSGKLLYSAR 188 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD ++VRIDRRRK+PV+ L ALG ++E+IL F+ + Sbjct: 189 IIPYRGSWLDFEFDPKDCVYVRIDRRRKLPVSILLRALGYETEDILGEFFEMTSCHLKNG 248 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + L L G S ++ TGE ++E G+++T+ +K +++ +K L + D L Sbjct: 249 EYHIDLIPQRL-RGEIASFDILVPGTGELIVEQGRRITARHIKQMEKAQMKDLIVPRDYL 307 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +A++I++ TGE+ +A D + E L+ + S I + ++Y + +++ +YI +T+ Sbjct: 308 IGKTLAKNIIDTLTGELVAQANDEVTEDLLDAMITSGIHEFDMIYTNDLDHGSYISDTVK 367 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D + +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N R+ Sbjct: 368 IDPTSSQLEALVEIYRMMRPGEPPTKEAAEALFKNLFFVEERYDLSAVGRMKFNRRVGRK 427 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 D + KEDI+A+IK L+D+RNG G +DDID+LGNRRVRSVGEM +NQ+R+GL+R+E Sbjct: 428 NDDGPGTLTKEDIMAVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFRVGLVRVE 487 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R++KER+S V+ +++MPQDLINAKPV +A+ EFF SSQLSQ + VN LS +TH RR+SA Sbjct: 488 RAVKERLSLVESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVTHKRRVSA 547 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGFIETP R Sbjct: 548 LGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFIETPCR 607 Query: 604 KVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 KV +G+VT+++ YLSA+EE ++YIAQ++ +LDEDG+ +LV CR E L +KI++ Sbjct: 608 KVIEGRVTDEIEYLSAIEEVDQYIAQSSVALDEDGNILADLVPCRHQNEFSLTTPDKINY 667 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME +VA S Sbjct: 668 MDISPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERIVASDS 727 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 G ++VAKR G+++ VDA RIV+R + + +GVDIY L K+ RSNQ+TC+NQRP+VK Sbjct: 728 GVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCINQRPIVK 787 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 GD ++R D++ADGP TD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V +D FT+IH Sbjct: 788 TGDMIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVQDDRFTTIH 847 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 IEE +ARDTKLG EEIT DIPNV E L ++DE G++ +GAEVN GDILVGK+TPKGE Sbjct: 848 IEELTCIARDTKLGAEEITADIPNVGESALSSLDESGVVYIGAEVNAGDILVGKVTPKGE 907 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 + +TPEEKLLRAIFGEKA DV+D+SLRVPSG++GTV+DV++F R G++K+ R+ S+E E Sbjct: 908 TQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARAKSIEEEH 967 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 + + +D DE+ I + +IY R+ I+ + A GP + + ++ + + R +W+ Sbjct: 968 LARVRKDLVDERRIREEDIYHRVSNIILDKVATGGPGNLRPGSKVTQEYLQSITRDKWFD 1027 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 ++++ + +E L Q E +E RF + +KI GDD+ PGVL++VKV++A+KR Sbjct: 1028 IRLENDTTSQQLEQLSKQLEMLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKVYLAVKRR 1087 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 IQ GDKMAGRHGNKG++S ++P EDMP ++DGT VDIVLNPLGVPSRMN+GQ+ ETHLG Sbjct: 1088 IQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQVLETHLGL 1147 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG KI +++ + +I R+FL K+ G + +D+ + R+A+ ++ Sbjct: 1148 AAKGLGNKISQMLDLKQNATEI---RTFLNKIYNHDGIQRVNLDCLNDEELYRLADNLRA 1204 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E I SML++ADL G+++LYDG TG FD PVTVGY+YMLKLNH+ Sbjct: 1205 GVPMATPVFDGASEAEIKSMLQLADLSPDGKTVLYDGRTGNRFDNPVTVGYMYMLKLNHL 1264 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1265 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1324 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ + G PESFNVL+KE++ALG+ I+LE+ Sbjct: 1325 GGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELEHD 1368 >gi|262043780|ref|ZP_06016882.1| DNA-directed RNA polymerase subunit beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330005030|ref|ZP_08305085.1| DNA-directed RNA polymerase, beta subunit [Klebsiella sp. MS 92-3] gi|259038867|gb|EEW40036.1| DNA-directed RNA polymerase subunit beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536449|gb|EGF62799.1| DNA-directed RNA polymerase, beta subunit [Klebsiella sp. MS 92-3] Length = 1353 Score = 1670 bits (4326), Expect = 0.0, Method: Composition-based stats. Identities = 712/1364 (52%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 12 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 67 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 68 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 125 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 126 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 185 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 186 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 245 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 246 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 302 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D ++ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 303 IAGKVAAKDYIDEATGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 362 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 363 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 422 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 423 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 482 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 483 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 542 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 543 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 602 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +G VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 603 RKVTNGVVTDEIHYLSAIEEGNYVIAQANSNLDENGHFVEDLVTCRSKGESSLFSRDQVD 662 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 663 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 722 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 723 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 782 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 783 SLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 842 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 843 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 902 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 903 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 962 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 963 QLKQAKKDLSEELQILEAGLFSRIYAVLVSGGV-------------EAEKLDKLPRDRWL 1009 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1010 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1069 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1070 RIQPGDKMAGRHGNKGVISKINPIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1129 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE + Sbjct: 1130 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRK 1189 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1190 GMPIATPVFDGAKEAEIKELLQLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1249 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1250 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1309 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1310 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1353 >gi|85375719|ref|YP_459781.1| DNA-directed RNA polymerase subunit beta [Erythrobacter litoralis HTCC2594] gi|122543126|sp|Q2N5Q7|RPOB_ERYLH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|84788802|gb|ABC64984.1| DNA-directed RNA polymerase 140 kDa subunit [Erythrobacter litoralis HTCC2594] Length = 1396 Score = 1670 bits (4325), Expect = 0.0, Method: Composition-based stats. Identities = 817/1373 (59%), Positives = 1060/1373 (77%), Gaps = 16/1373 (1%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R+RK FG E++ +P+LIEVQ+ SY+ FL N D GL+ +SVFPI F+G Sbjct: 20 RRIRKIFGDIHEVVKMPNLIEVQRESYEQFLRSNKEIDYVS--GLEKTLRSVFPIRDFAG 77 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 A L+FV YE +PPK+D +C R +TYA P+K+TLRLIVF+VD+ T +S+ DIKEQ + Sbjct: 78 TAELDFVHYELEPPKYDTTECRQRGITYAAPMKVTLRLIVFEVDQETETRSVLDIKEQDV 137 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHD+G+ SGKLL+A R+IP +G Sbjct: 138 YMGDMPLMTGNGTFIINGTERVIVSQMHRSPGVLFDHDRGKTHSSGKLLFAARVIPYRGS 197 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS----QRGDFWC 246 W+D EFD+KDI++VRIDR+RK+PVT+ L ALG+DSEEIL FY + + ++G+ W Sbjct: 198 WLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLDSEEILHFFYNTVTWKRAGGKKGEGWK 257 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 P G K + +LVD TGE+V + +K++ ++ G+K L + ++ + Sbjct: 258 IPFEPE-AWRGQKPTFALVDAKTGEEVFPANQKISPRAANKAQKDGLKDLLLPTEEVFAR 316 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDK 366 Y A+D+++ +TG IYIEAGD + LE + + I ++ +L +D +N +IRNTL DK Sbjct: 317 YAAKDMIDEKTGRIYIEAGDEVGPDHLEALDAAGIDELELLDIDEINTGPWIRNTLKVDK 376 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 ++R + L IY+VMRPG+ T AE++F LFFD ++YDLS VGRVK+NMRL+LD D Sbjct: 377 AENRDEGLEAIYKVMRPGEPPTKETAEALFEGLFFDGERYDLSAVGRVKLNMRLDLDAED 436 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 V +RKEDI+A++K LV L++GKG +DDIDNLGNRRVRSVGE+L+NQYR+GLLRMER++ Sbjct: 437 TVTTLRKEDILAVVKELVGLKDGKGDVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAV 496 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 KER+SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH RR+SALG Sbjct: 497 KERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGP 556 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL++FARVN YGFIETPYR V Sbjct: 557 GGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETPYRVVK 616 Query: 607 DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 DGKVT++V+YLSAMEE+ +AQA++ L EDG+F EEL+ R G+ ++ P E + +D Sbjct: 617 DGKVTSEVIYLSAMEEQKHTVAQASAELTEDGTFVEELISARQNGDNLMAPSETVTLMDV 676 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPL+KAEAP+VGTGME VA+ SGAA Sbjct: 677 SPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPWVGTGMEETVARDSGAA 736 Query: 727 IVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGD 786 I A R GIV+QVDA RIVIR+ GD++P SGVDIY L KFQRSNQNTC+NQRPLVKVG+ Sbjct: 737 ITATRGGIVDQVDATRIVIRA-IGDVEPGQSGVDIYTLQKFQRSNQNTCINQRPLVKVGE 795 Query: 787 EVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEE 846 V D+IADGPSTDLG+LALG+N LVAFMPW+GYN+EDS+LISER+V +DVFTSIHIEE Sbjct: 796 TVEAGDVIADGPSTDLGELALGKNTLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIEE 855 Query: 847 FEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPM 906 FEVMARDTKLGPE+ITRDIPNV EE L+N+DE GI+ +GAEV+PGDIL GKITPKGESPM Sbjct: 856 FEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILCGKITPKGESPM 915 Query: 907 TPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 TPEEKLLRAIFGEKA DVRDTSLR+P GV+GTVV+VR+FNRHGI+ ++R+ ++++E+IE Sbjct: 916 TPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIEVDDRTRAIQQEEIER 975 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 L +D DE+ IL+R Y+RL ++L GQ A + PKG KK + L+ R +W++FAV Sbjct: 976 LRKDSQDERTILNRATYNRLRDMLLGQTASAAPKGVKKGVKIDEALLEGIDRHEWFKFAV 1035 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 D+ Q+ +E++K QY+ + ++D+F+++ EK++ GD++ PGVL++VKVFVA+KR +Q Sbjct: 1036 ADDNRQQQIEAVKSQYDEAAKGIDDKFEDRKEKLERGDELAPGVLKMVKVFVAVKRKLQP 1095 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG++SRILP EDMPFL+DGTPVDIVLNPLGVPSRMNVGQIFETHLG+A Sbjct: 1096 GDKMAGRHGNKGVISRILPVEDMPFLEDGTPVDIVLNPLGVPSRMNVGQIFETHLGFAAR 1155 Query: 1147 GLGKKIKSLINDYKANGDISP-------LRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 GLG+++K+ + D++A ++ L++V G + + I+ + ++ +A Sbjct: 1156 GLGQQVKNALEDWRAANPDPEAGKPPEAVKETLQRVYGDR-YEDDIAGRSNAEIIELASN 1214 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 +GVP+ TPVFDGA E + + L A +D SGQS+LYDG TGE FDR VTVG IYMLKL Sbjct: 1215 LTAGVPMGTPVFDGAREGDVTTQLEAAGIDSSGQSVLYDGRTGEAFDRKVTVGIIYMLKL 1274 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEMLT+KS Sbjct: 1275 HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKS 1334 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 DDVVGRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L + + Sbjct: 1335 DDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSLTDGDED 1387 >gi|218551029|ref|YP_002384820.1| DNA-directed RNA polymerase subunit beta [Escherichia fergusonii ATCC 35469] gi|226699406|sp|B7LUL5|RPOB_ESCF3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|218358570|emb|CAQ91218.1| RNA polymerase, beta subunit [Escherichia fergusonii ATCC 35469] gi|323963795|gb|EGB59294.1| DNA-directed RNA polymerase [Escherichia coli M863] gi|323974187|gb|EGB69319.1| DNA-directed RNA polymerase [Escherichia coli TW10509] gi|324110899|gb|EGC04891.1| DNA-directed RNA polymerase [Escherichia fergusonii B253] gi|325499281|gb|EGC97140.1| DNA-directed RNA polymerase subunit beta [Escherichia fergusonii ECD227] gi|327250457|gb|EGE62167.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli STEC_7v] Length = 1342 Score = 1670 bits (4325), Expect = 0.0, Method: Composition-based stats. Identities = 717/1364 (52%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVIDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|237654003|ref|YP_002890317.1| DNA-directed RNA polymerase subunit beta [Thauera sp. MZ1T] gi|237625250|gb|ACR01940.1| DNA-directed RNA polymerase, beta subunit [Thauera sp. MZ1T] Length = 1377 Score = 1670 bits (4325), Expect = 0.0, Method: Composition-based stats. Identities = 713/1384 (51%), Positives = 963/1384 (69%), Gaps = 27/1384 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++D P L+ Q S+ FL + PD R N+GLQAAF S+ Sbjct: 1 MAYSYTEKKRIRKSFAKRAAVLDAPFLLATQIESFAEFLQADTPPDVRRNQGLQAAFTSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI++ SG A LE+V Y P FDV +C R LT+A PL+ +RL++ D + +I Sbjct: 61 FPISSHSGNARLEYVQYMLGEPAFDVKECQQRGLTFASPLRARVRLVIMDREAPKE--TI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ R+DRRRK+PVT L A+GM EEIL+TF+ + +G Sbjct: 179 RIIPYRGSWLDFEFDPKDYLYFRVDRRRKMPVTILLRAIGMTPEEILATFHDTDTFHLQG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + F L L G + D G+ ++ K++TS ++ + + GVK + + D Sbjct: 239 EGAQFELVPERL-RGEVARFDITTPD-GKIIVAREKRITSKHIREIDQAGVKTMAVPDDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A ++V+ TGE+ A D I E L+++ + + + LY++ ++ YI TL Sbjct: 297 LLGRVIATNVVDPATGELLARANDEITEDLLDKLRLAGVTGLSTLYINDLDRGGYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E +F LF+ ++YDLS+VGR+K N R Sbjct: 357 RIDETADQWAAKVAIYRMMRPGEPPTEDAVEGLFQGLFYAEERYDLSSVGRMKFNRRAYP 416 Query: 423 DT--------------------PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNR 462 + D + +DI+A++ +LV+LRNG+G IDDID+LGNR Sbjct: 417 EKIDDKAPGWLKRFYQRVGAQGEDGPGVLVNDDILAVVGVLVELRNGRGEIDDIDHLGNR 476 Query: 463 RVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQL 522 RVRSVGE+ +NQ+R GL+R+ER++KER+S + D++MP DLINAKP+ +A+ EFF SSQL Sbjct: 477 RVRSVGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPISAAIKEFFGSSQL 536 Query: 523 SQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGL 582 SQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL Sbjct: 537 SQFMDQTNPLSEITHRRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 596 Query: 583 VSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE 642 ++SL +AR N +GF+ETPYRKV DGKVT+ + +LSA+EE IAQAN+ +DE G Sbjct: 597 INSLAVYARTNRHGFLETPYRKVNDGKVTDQIDFLSAIEEGQYVIAQANAEIDEAGMLAG 656 Query: 643 ELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP 702 +LV CR GE +L + + ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP Sbjct: 657 DLVSCRHKGEFLLATSDMVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVP 716 Query: 703 LLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 L+ E P VGTG+E VA SG A+ A R GIV+ VDA R+VIR + + P GVDIY Sbjct: 717 CLRPEKPLVGTGIERRVAVDSGTAVQATRGGIVDYVDANRVVIRVNDDETLPGEVGVDIY 776 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 ++K+ RSNQNT +NQRP+VKVGD + R D++ADG STDLG+LALG+NMLV FMPW+GYN Sbjct: 777 NMIKYTRSNQNTNINQRPVVKVGDLIARGDVVADGASTDLGELALGQNMLVGFMPWNGYN 836 Query: 823 FEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGII 882 FEDS+LISER+V++D FTSIHIEE V+ARDTKLGPEEITRDI ++ E L +DE GI+ Sbjct: 837 FEDSILISERVVADDRFTSIHIEELTVVARDTKLGPEEITRDIASLGEAQLSRLDESGIV 896 Query: 883 CVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDV 942 +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV Sbjct: 897 YIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDV 956 Query: 943 RIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 ++F R GI++++R+ S+ EQ+ D D+ I++R+ ++R+ ++ GQ A GPK Sbjct: 957 QVFTREGIERDKRAQSIIDEQLRSFKTDLADQMRIVERDAFARIRRMIVGQLANGGPKKL 1016 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 K L+ + W+ + DE + +E+++ E ++ E F+ K +K+ Sbjct: 1017 AKGAALTDPYLDSLEHYHWFDIRLADETLAVQLEAVREGLENTRKDFEQAFEIKKKKLTQ 1076 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++PPGV ++VKV++A+KR +Q GDKMAGRHGNKG+VS+I+P EDMP+++DGTP+DIVL Sbjct: 1077 GDELPPGVQKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMEDGTPLDIVL 1136 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182 NPLGVPSRMN+GQI ETHLGWA GLG+KI ++ +A LR FLE++ H Sbjct: 1137 NPLGVPSRMNIGQILETHLGWAAKGLGQKIDKML---QAQASALELRGFLEQIYNGSGHP 1193 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242 E I++ D V +A K GVP +TPVFDGA EE I ML +A L GQ LYDG TG Sbjct: 1194 EDIANLGDSDVRELAGNLKKGVPFATPVFDGAKEEEIQQMLELAGLPTGGQVTLYDGRTG 1253 Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302 E F+R VTVGY ++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW + Sbjct: 1254 EAFERKVTVGYKHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1313 Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +AYGAAY LQEMLT+KSDDV GRT+VYE+IV G ++G PESFNVLVKE+++L + ID Sbjct: 1314 EAYGAAYTLQEMLTVKSDDVTGRTKVYENIVKGEHKIDSGMPESFNVLVKEIRSLAIDID 1373 Query: 1363 LENS 1366 L+ Sbjct: 1374 LDRE 1377 >gi|82778838|ref|YP_405187.1| DNA-directed RNA polymerase subunit beta [Shigella dysenteriae Sd197] gi|309783938|ref|ZP_07678583.1| DNA-directed RNA polymerase, beta subunit [Shigella dysenteriae 1617] gi|88909638|sp|Q32AF9|RPOB_SHIDS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|81242986|gb|ABB63696.1| RNA polymerase, beta subunit [Shigella dysenteriae Sd197] gi|308928309|gb|EFP73771.1| DNA-directed RNA polymerase, beta subunit [Shigella dysenteriae 1617] Length = 1342 Score = 1670 bits (4325), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 973/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLELLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|297717810|gb|ADI50048.1| DNA-directed RNA polymerase beta subunit [Candidatus Odyssella thessalonicensis L13] Length = 1388 Score = 1670 bits (4325), Expect = 0.0, Method: Composition-based stats. Identities = 811/1386 (58%), Positives = 1047/1386 (75%), Gaps = 28/1386 (2%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 F G+ R RK FG+ + +P+LIE+QK+SY+ FL +IA ++R GL FKS FPI Sbjct: 4 SFTGMKRFRKNFGRISDEAKMPNLIELQKSSYEKFLQQSIAYNKREEIGLHEVFKSTFPI 63 Query: 66 TAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDI 125 T FSG A LE+ Y+FD PK+D D+C R LTYA PLK+TLRL+V+D+DE TGAKSIKDI Sbjct: 64 TDFSGKAHLEYFKYDFDKPKYDEDECRQRGLTYAAPLKLTLRLVVWDIDEDTGAKSIKDI 123 Query: 126 KEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRII 185 KEQ +YMGD+PLMT +GTF+I G++R++VSQ+HRSPG+ FDHDKG++ SGK L+A R++ Sbjct: 124 KEQEVYMGDMPLMTDNGTFIINGVERVIVSQMHRSPGVFFDHDKGKSHSSGKYLFAARVV 183 Query: 186 PDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL------------------------ 221 P +G W+D EFD KD++HVRIDRRRK+P+T+FLMAL Sbjct: 184 PYRGSWLDFEFDPKDLVHVRIDRRRKLPITAFLMALDSAATMQKRAEAEAKGQPLPAAMV 243 Query: 222 -GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKL 280 GM EEIL+TFY I YS+ W + G K++S L+D TG V +G K+ Sbjct: 244 TGMSREEILATFYETITYSKHKKGWKTAYLPEN-WRGVKLTSDLIDASTGTVVASAGTKI 302 Query: 281 TSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEI-FHS 339 T + K G+ + + S+ L GLY+A++ +N ETGEIY EAG+ + K + + + Sbjct: 303 TPRMAKKFAADGLSEILVYSENLEGLYLAKEYINEETGEIYAEAGEELTLKIISVLEQNL 362 Query: 340 EIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL 399 +++IP+L++D+VN Y+RN+L+ DK +R++AL +IYRVMRPG+ T AE++F L Sbjct: 363 NLKEIPVLHIDNVNVGPYLRNSLIADKINNREEALFEIYRVMRPGEPPTLEGAEALFTGL 422 Query: 400 FFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNL 459 FFD++KYDLS VGRVKMN RL++D D VR +RKEDI+ I+K L++L++G+G IDDIDNL Sbjct: 423 FFDAEKYDLSAVGRVKMNARLDIDCSDSVRILRKEDILLILKALLELKDGRGEIDDIDNL 482 Query: 460 GNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 GNRRVR+VGE+L+NQYR+GL RMER+IKER+SSV+ID+VMP DLINAKP + V EFF S Sbjct: 483 GNRRVRAVGELLENQYRVGLSRMERAIKERMSSVEIDTVMPHDLINAKPAAAVVREFFGS 542 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 SQLSQ + N LS ITH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG N Sbjct: 543 SQLSQFMDQTNPLSEITHKRRLSALGPGGLTRDRAGFEVRDVHPTHYGRICPIETPEGQN 602 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 IGL++SL ++ARVN YGFIE+PYRKV +GKVTN++VYL+AMEE IAQAN +LD+DG Sbjct: 603 IGLINSLATYARVNQYGFIESPYRKVKEGKVTNEIVYLTAMEETRHIIAQANITLDKDGR 662 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQ 699 +ELV CR GE ++ PRE I +D SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQ Sbjct: 663 IADELVTCRKNGEFVIQPREDITLVDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQ 722 Query: 700 AVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGV 759 AVPLL+ EAP VGTGME+ VAK SG+ ++AKRAG+V+ VD RIVIR +E + GV Sbjct: 723 AVPLLRCEAPLVGTGMEATVAKDSGSCVLAKRAGVVDSVDGRRIVIRVLERTEGDDSVGV 782 Query: 760 DIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWH 819 DIY L KFQRSN +TC+NQ+PLVK GD +++ D+IADGP+T+LG+LALGRN+LV FM W Sbjct: 783 DIYNLQKFQRSNMSTCINQKPLVKKGDIIKKGDVIADGPATELGELALGRNVLVGFMSWQ 842 Query: 820 GYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDEC 879 GYNFEDS+++SER+ +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE L+N+DE Sbjct: 843 GYNFEDSIILSERIAQDDVFTSIHIEEFEVMARDTKLGNEEITRDIPNVGEEALRNLDEA 902 Query: 880 GIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTV 939 GII +GAEV GDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSLRVP G++GT+ Sbjct: 903 GIIYIGAEVKAGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGIAGTI 962 Query: 940 VDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGP 999 VDVR+F+R G+DK+ER++++ER++IE LA+D+D E+ IL+RN Y L E+L G VS P Sbjct: 963 VDVRVFSRRGVDKDERALTIERQEIERLAKDRDAEKAILERNFYKNLEEMLLGHTLVSAP 1022 Query: 1000 KGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 KG K ++ ++E P+ QW Q V ++ V VE++K + + L+D F+ K+EK Sbjct: 1023 KGIKTGEKITEAFLAELPKHQWKQLLVDNDDVMSRVEAMKRHLDDGFTKLQDWFEGKVEK 1082 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 ++ GD++ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VSRI+P EDMP L+DGT +D Sbjct: 1083 LRAGDELSPGVLKMVKVFIAVKRKIQPGDKMAGRHGNKGVVSRIVPLEDMPHLEDGTILD 1142 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI-KSLINDYKANGDISPLRSFLEKVIGT 1178 I+LNPLG+PSRMNVGQI ETH+G A GL K+I +++ ++N + L++ L+KV Sbjct: 1143 IILNPLGLPSRMNVGQILETHMGAAAAGLSKQINDAVLRIQQSNAQLGELKAELKKVYNK 1202 Query: 1179 GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYD 1238 + I + D+ V+ +A + GVP++TPVFDGA E+ I L + + +GQ L D Sbjct: 1203 TEDAKDIDNMPDEQVMELARNLRRGVPIATPVFDGASEQDIADALIASGIPTTGQQYLVD 1262 Query: 1239 GLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEME 1298 G TGE DRP TVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEME Sbjct: 1263 GRTGERLDRPTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1322 Query: 1299 VWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALG 1358 VW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV G+D E G PESFNVLVKE+++LG Sbjct: 1323 VWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDNMEAGIPESFNVLVKELRSLG 1382 Query: 1359 LSIDLE 1364 L++ E Sbjct: 1383 LNMSFE 1388 >gi|152972845|ref|YP_001337991.1| DNA-directed RNA polymerase subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892457|ref|YP_002917191.1| DNA-directed RNA polymerase subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|150957694|gb|ABR79724.1| DNA-directed RNA polymerase beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238544773|dbj|BAH61124.1| DNA-directed RNA polymerase beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1353 Score = 1670 bits (4325), Expect = 0.0, Method: Composition-based stats. Identities = 713/1364 (52%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 12 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 67 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 68 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 125 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 126 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 185 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 186 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 245 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 246 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 302 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D ++ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 303 IAGKVAAKDYIDEATGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 362 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 363 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 422 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 423 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 482 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 483 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 542 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 543 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 602 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 603 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDENGHFVEDLVTCRSKGESSLFSRDQVD 662 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 663 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 722 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 723 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 782 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 783 SLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 842 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 843 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 902 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 903 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 962 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 963 QLKQAKKDLSEELQILEAGLFSRIYAVLVSGGV-------------EAEKLDKLPRDRWL 1009 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1010 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1069 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1070 RIQPGDKMAGRHGNKGVISKINPIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1129 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE + Sbjct: 1130 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRK 1189 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1190 GMPIATPVFDGAKEAEIKELLQLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1249 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1250 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1309 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1310 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1353 >gi|119899713|ref|YP_934926.1| DNA-directed RNA polymerase subunit beta [Azoarcus sp. BH72] gi|158512919|sp|A1KB34|RPOB_AZOSB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|119672126|emb|CAL96040.1| DNA-directed RNA polymerase [Azoarcus sp. BH72] Length = 1377 Score = 1670 bits (4325), Expect = 0.0, Method: Composition-based stats. Identities = 710/1384 (51%), Positives = 972/1384 (70%), Gaps = 27/1384 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++D P L+ Q S+ FL P+ R N+GLQAAF S+ Sbjct: 1 MAYSYTEKKRIRKSFAKRAAVLDAPFLLATQIESFASFLQAETPPESRYNQGLQAAFTSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI++ SG A LEFV Y P FDV +C R LT+A PL+ +RL++ D + +I Sbjct: 61 FPISSHSGNARLEFVQYMLGEPAFDVKECQQRGLTFASPLRARVRLVIMDREAPKE--TI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ R+DRRRK+PVT L A+GM EEIL TF+ + Sbjct: 179 RIIPYRGSWLDFEFDPKDYLYFRVDRRRKMPVTILLRAIGMTPEEILETFHDFDAFHLSA 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + F L D + G +VD TG+ ++ K++T+ ++ L + G+K +G+ D Sbjct: 239 EGAQFELVP-DRLRGEVARFDIVDP-TGKVIVARDKRITAKHIRELDQAGIKMIGVPDDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A ++V+ ETGE+ A + I E L ++ + +RD+ LYV+ ++ AYI +TL Sbjct: 297 VLGRIIARNVVDPETGELLARANEEITEDLLGKLRDAGVRDLVTLYVNDLDRGAYISSTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++F LF+ ++YDLSTVGR+K N R Sbjct: 357 RIDETADQWAARVAIYRMMRPGEPPTEEAVEALFQGLFYAPERYDLSTVGRMKFNRRAYP 416 Query: 423 DT--------------------PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNR 462 + + + EDI+A+I +LV+LRNG+G IDDID+LGNR Sbjct: 417 EKIDDKAPGWLKRFYDKVGPHGEEGEGVLANEDILAVIGVLVELRNGRGEIDDIDHLGNR 476 Query: 463 RVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQL 522 RVRSVGE+ +NQ+R GL+R+ER++KER+S + D++MP DLINAKP+ +A+ EFF SSQL Sbjct: 477 RVRSVGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPISAAIKEFFGSSQL 536 Query: 523 SQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGL 582 SQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL Sbjct: 537 SQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 596 Query: 583 VSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE 642 ++SL +AR N +GF+ETPYRKV DGKVT+ + +LSA+EE IAQAN+ + DG+ Sbjct: 597 INSLAVYARTNRHGFLETPYRKVTDGKVTDQIDFLSAIEEGQYVIAQANAEIGGDGALEG 656 Query: 643 ELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP 702 +LV CR GE +L +++ ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP Sbjct: 657 DLVSCRHKGEFMLATADQVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVP 716 Query: 703 LLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 L+ E P VGTG+E VA SG A+ A R G+V+ VDA R+V+R + + GVDIY Sbjct: 717 CLRPEKPLVGTGIERTVAVDSGTAVQAMRGGVVDYVDAQRVVVRVNDNEALAGEVGVDIY 776 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 ++K+ RSNQNT +NQRP+V+VGD + + D+IADG STDLG+LALG+NMLVAFMPW+GYN Sbjct: 777 NMIKYTRSNQNTNINQRPVVRVGDLIAKGDVIADGASTDLGELALGQNMLVAFMPWNGYN 836 Query: 823 FEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGII 882 FEDS+LISER+V++D FTSIH+EE V+ARDTKLGPEEITRDI ++ E L +DE GI+ Sbjct: 837 FEDSILISERVVADDRFTSIHVEELTVVARDTKLGPEEITRDIASLGEAQLSRLDESGIV 896 Query: 883 CVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDV 942 +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV Sbjct: 897 YIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDV 956 Query: 943 RIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 ++F R GI++++R+ S+ +Q+ D D+ I++R+ ++R+ ++ GQ A GPK Sbjct: 957 QVFTREGIERDKRAQSIIDDQLRSFKTDLADQMRIVERDAFARIQRMIVGQKANGGPKKL 1016 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 K ++++ + W+ + DE++ +E+++ E ++ E F+ K +K+ Sbjct: 1017 AKGAAITAEYLETLEFYHWFDIRMADEELAIQLEAVREGLEKTRKDFEQAFEIKKKKLTQ 1076 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++PP V ++VKV++A+KR +Q GDKMAGRHGNKG+VS+I+P EDMP+++DGTPVDIVL Sbjct: 1077 GDELPPDVQKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMEDGTPVDIVL 1136 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182 NPLGVPSRMN+GQI ETHLGWA GLG+KI L+ +AN +R LE++ Sbjct: 1137 NPLGVPSRMNIGQILETHLGWAAKGLGQKIDRLL---RANAAAGEVRGLLEEIYNGSGKP 1193 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242 E S++ D V+ +A K GVP +TPVFDGA EE I ML +A L GQ L+DG TG Sbjct: 1194 EDFSEFTDGDVIELATNLKKGVPFATPVFDGAKEEEIAKMLELAGLPVGGQVTLFDGRTG 1253 Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302 E F+R VTVGY ++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW + Sbjct: 1254 EAFERKVTVGYKHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1313 Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +AYGAAY LQEMLT+KSDDV GRT+VYE+IV G ++G PESFNVLVKE+++L + ID Sbjct: 1314 EAYGAAYTLQEMLTVKSDDVTGRTKVYENIVKGEHKIDSGMPESFNVLVKEIRSLAIDID 1373 Query: 1363 LENS 1366 L+ Sbjct: 1374 LDRE 1377 >gi|283787340|ref|YP_003367205.1| DNA-directed RNA polymerase, beta-subunit [Citrobacter rodentium ICC168] gi|282950794|emb|CBG90470.1| DNA-directed RNA polymerase, beta-subunit [Citrobacter rodentium ICC168] Length = 1342 Score = 1670 bits (4324), Expect = 0.0, Method: Composition-based stats. Identities = 710/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKIYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ TGE+ A + L ++ + + I L+ + +++ YI T+ Sbjct: 292 IAGKVASKDYVDESTGELICPANMELSLDLLAKLSQAGHKRIETLFTNDLDHGPYISETI 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD+DG F E+LV CR GE L R+++D Sbjct: 592 RRVVDGVVTDEIHYLSAIEEGNFVIAQANSNLDDDGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIHAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|182676584|sp|A6TGP0|RPOB_KLEP7 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1342 Score = 1670 bits (4324), Expect = 0.0, Method: Composition-based stats. Identities = 713/1364 (52%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D ++ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVAAKDYIDEATGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDENGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIYAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLQLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|110644322|ref|YP_672052.1| DNA-directed RNA polymerase subunit beta [Escherichia coli 536] gi|123343346|sp|Q0TA78|RPOB_ECOL5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|110345914|gb|ABG72151.1| DNA-directed RNA polymerase beta chain [Escherichia coli 536] Length = 1342 Score = 1670 bits (4324), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLSPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|26250758|ref|NP_756798.1| DNA-directed RNA polymerase subunit beta [Escherichia coli CFT073] gi|91212806|ref|YP_542792.1| DNA-directed RNA polymerase subunit beta [Escherichia coli UTI89] gi|117626250|ref|YP_859573.1| DNA-directed RNA polymerase subunit beta [Escherichia coli APEC O1] gi|227885483|ref|ZP_04003288.1| DNA-directed RNA polymerase subunit beta [Escherichia coli 83972] gi|237702755|ref|ZP_04533236.1| RNA polymerase beta subunit [Escherichia sp. 3_2_53FAA] gi|254039244|ref|ZP_04873293.1| RNA polymerase beta subunit [Escherichia sp. 1_1_43] gi|293413423|ref|ZP_06656083.1| DNA-directed RNA polymerase [Escherichia coli B354] gi|300819798|ref|ZP_07099985.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 107-1] gi|300824634|ref|ZP_07104742.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 119-7] gi|300897599|ref|ZP_07116008.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 198-1] gi|300907539|ref|ZP_07125178.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 84-1] gi|300919403|ref|ZP_07135908.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 115-1] gi|300925854|ref|ZP_07141698.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 182-1] gi|300928805|ref|ZP_07144313.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 187-1] gi|300938788|ref|ZP_07153501.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 21-1] gi|300947408|ref|ZP_07161600.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 116-1] gi|300954783|ref|ZP_07167213.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 175-1] gi|300979612|ref|ZP_07174628.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 45-1] gi|300985544|ref|ZP_07177478.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 200-1] gi|301019410|ref|ZP_07183585.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 69-1] gi|301047721|ref|ZP_07194780.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 185-1] gi|301302201|ref|ZP_07208333.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 124-1] gi|301326082|ref|ZP_07219480.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 78-1] gi|301645759|ref|ZP_07245679.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 146-1] gi|309797690|ref|ZP_07692076.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 145-7] gi|331644721|ref|ZP_08345839.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli H736] gi|331649840|ref|ZP_08350918.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli M605] gi|331655684|ref|ZP_08356674.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli M718] gi|331675473|ref|ZP_08376222.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli TA280] gi|331680107|ref|ZP_08380768.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli H591] gi|26111189|gb|AAN83372.1|AE016770_172 DNA-directed RNA polymerase beta chain [Escherichia coli CFT073] gi|91074380|gb|ABE09261.1| RNA polymerase beta subunit [Escherichia coli UTI89] gi|115515374|gb|ABJ03449.1| DNA-directed RNA polymerase beta chain protein RpoB [Escherichia coli APEC O1] gi|226838479|gb|EEH70509.1| RNA polymerase beta subunit [Escherichia sp. 1_1_43] gi|226903068|gb|EEH89327.1| RNA polymerase beta subunit [Escherichia sp. 3_2_53FAA] gi|227837557|gb|EEJ48023.1| DNA-directed RNA polymerase subunit beta [Escherichia coli 83972] gi|291468018|gb|EFF10517.1| DNA-directed RNA polymerase [Escherichia coli B354] gi|300300386|gb|EFJ56771.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 185-1] gi|300306524|gb|EFJ61044.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 200-1] gi|300318282|gb|EFJ68066.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 175-1] gi|300358675|gb|EFJ74545.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 198-1] gi|300399264|gb|EFJ82802.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 69-1] gi|300400729|gb|EFJ84267.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 84-1] gi|300409465|gb|EFJ93003.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 45-1] gi|300413520|gb|EFJ96830.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 115-1] gi|300418069|gb|EFK01380.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 182-1] gi|300452987|gb|EFK16607.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 116-1] gi|300456298|gb|EFK19791.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 21-1] gi|300463186|gb|EFK26679.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 187-1] gi|300522883|gb|EFK43952.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 119-7] gi|300527619|gb|EFK48681.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 107-1] gi|300842364|gb|EFK70124.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 124-1] gi|300847175|gb|EFK74935.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 78-1] gi|301075970|gb|EFK90776.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 146-1] gi|308118702|gb|EFO55964.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 145-7] gi|315253059|gb|EFU33027.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 85-1] gi|315288332|gb|EFU47731.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 110-3] gi|315294356|gb|EFU53707.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 153-1] gi|324009493|gb|EGB78712.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 57-2] gi|324015273|gb|EGB84492.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 60-1] gi|324017338|gb|EGB86557.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 117-3] gi|331036021|gb|EGI08258.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli H736] gi|331041306|gb|EGI13458.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli M605] gi|331046609|gb|EGI18696.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli M718] gi|331067351|gb|EGI38757.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli TA280] gi|331072262|gb|EGI43596.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli H591] gi|332105287|gb|EGJ08633.1| RNA polymerase beta subunit [Shigella sp. D9] Length = 1353 Score = 1670 bits (4324), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 12 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 67 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 68 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 125 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 126 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 185 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 186 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 245 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 246 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 302 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 303 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 362 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 363 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 422 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 423 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 482 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 483 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 542 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 543 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 602 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 603 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 662 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 663 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 722 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 723 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 782 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 783 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 842 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 843 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 902 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 903 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 962 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 963 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 1009 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1010 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1069 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1070 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1129 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1130 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1189 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1190 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1249 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1250 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1309 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1310 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1353 >gi|15834164|ref|NP_312937.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O157:H7 str. Sakai] gi|16131817|ref|NP_418414.1| RNA polymerase, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|30064730|ref|NP_838901.1| DNA-directed RNA polymerase subunit beta [Shigella flexneri 2a str. 2457T] gi|56480500|ref|NP_709782.2| DNA-directed RNA polymerase subunit beta [Shigella flexneri 2a str. 301] gi|74314481|ref|YP_312900.1| DNA-directed RNA polymerase subunit beta [Shigella sonnei Ss046] gi|82546329|ref|YP_410276.1| DNA-directed RNA polymerase subunit beta [Shigella boydii Sb227] gi|89110052|ref|AP_003832.1| RNA polymerase, beta subunit [Escherichia coli str. K-12 substr. W3110] gi|157155952|ref|YP_001465480.1| DNA-directed RNA polymerase subunit beta [Escherichia coli E24377A] gi|157163455|ref|YP_001460773.1| DNA-directed RNA polymerase subunit beta [Escherichia coli HS] gi|168758620|ref|ZP_02783627.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|168764565|ref|ZP_02789572.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|168771457|ref|ZP_02796464.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|168777402|ref|ZP_02802409.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|168780370|ref|ZP_02805377.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|168790345|ref|ZP_02815352.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|168798381|ref|ZP_02823388.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|170022010|ref|YP_001726964.1| DNA-directed RNA polymerase subunit beta [Escherichia coli ATCC 8739] gi|170083447|ref|YP_001732767.1| RNA polymerase, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170680149|ref|YP_001746371.1| DNA-directed RNA polymerase subunit beta [Escherichia coli SMS-3-5] gi|187731358|ref|YP_001882672.1| DNA-directed RNA polymerase subunit beta [Shigella boydii CDC 3083-94] gi|188495017|ref|ZP_03002287.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli 53638] gi|191168659|ref|ZP_03030440.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli B7A] gi|191174299|ref|ZP_03035807.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli F11] gi|193066419|ref|ZP_03047466.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli E22] gi|193067811|ref|ZP_03048777.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli E110019] gi|194429975|ref|ZP_03062484.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli B171] gi|194434765|ref|ZP_03067016.1| DNA-directed RNA polymerase, beta subunit [Shigella dysenteriae 1012] gi|194439780|ref|ZP_03071847.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli 101-1] gi|195939612|ref|ZP_03084994.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O157:H7 str. EC4024] gi|208808239|ref|ZP_03250576.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208814392|ref|ZP_03255721.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208820515|ref|ZP_03260835.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209395910|ref|YP_002273503.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209921465|ref|YP_002295549.1| DNA-directed RNA polymerase subunit beta [Escherichia coli SE11] gi|215489319|ref|YP_002331750.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|217325660|ref|ZP_03441744.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|218556541|ref|YP_002389455.1| DNA-directed RNA polymerase subunit beta [Escherichia coli IAI1] gi|218561053|ref|YP_002393966.1| DNA-directed RNA polymerase subunit beta [Escherichia coli S88] gi|218697694|ref|YP_002405361.1| DNA-directed RNA polymerase subunit beta [Escherichia coli 55989] gi|218702617|ref|YP_002410246.1| DNA-directed RNA polymerase subunit beta [Escherichia coli IAI39] gi|218707605|ref|YP_002415124.1| DNA-directed RNA polymerase subunit beta [Escherichia coli UMN026] gi|238903043|ref|YP_002928839.1| RNA polymerase, beta subunit [Escherichia coli BW2952] gi|253775384|ref|YP_003038215.1| DNA-directed RNA polymerase subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163928|ref|YP_003047036.1| DNA-directed RNA polymerase subunit beta [Escherichia coli B str. REL606] gi|254795985|ref|YP_003080822.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O157:H7 str. TW14359] gi|256021693|ref|ZP_05435558.1| DNA-directed RNA polymerase subunit beta [Shigella sp. D9] gi|256026302|ref|ZP_05440167.1| DNA-directed RNA polymerase subunit beta [Escherichia sp. 4_1_40B] gi|260846787|ref|YP_003224565.1| RNA polymerase, beta subunit [Escherichia coli O103:H2 str. 12009] gi|260858096|ref|YP_003231987.1| RNA polymerase, beta subunit [Escherichia coli O26:H11 str. 11368] gi|260870698|ref|YP_003237100.1| RNA polymerase, beta subunit [Escherichia coli O111:H- str. 11128] gi|261227302|ref|ZP_05941583.1| RNA polymerase, beta subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261257049|ref|ZP_05949582.1| RNA polymerase, beta subunit [Escherichia coli O157:H7 str. FRIK966] gi|291285401|ref|YP_003502219.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O55:H7 str. CB9615] gi|293407603|ref|ZP_06651521.1| DNA-directed RNA polymerase beta subunit [Escherichia coli FVEC1412] gi|293417490|ref|ZP_06660113.1| DNA-directed RNA polymerase [Escherichia coli B185] gi|293474293|ref|ZP_06664702.1| DNA-directed RNA polymerase [Escherichia coli B088] gi|298383351|ref|ZP_06992943.1| DNA-directed RNA polymerase subunit beta [Escherichia coli FVEC1302] gi|301023356|ref|ZP_07187146.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 196-1] gi|306812002|ref|ZP_07446210.1| DNA-directed RNA polymerase subunit beta [Escherichia coli NC101] gi|307140678|ref|ZP_07500034.1| DNA-directed RNA polymerase subunit beta [Escherichia coli H736] gi|307315040|ref|ZP_07594626.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli W] gi|312965360|ref|ZP_07779593.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli 2362-75] gi|312974227|ref|ZP_07788397.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli 1827-70] gi|331665641|ref|ZP_08366537.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli TA143] gi|331670839|ref|ZP_08371674.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli TA271] gi|331685728|ref|ZP_08386310.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli H299] gi|67472412|sp|P0A8V2|RPOB_ECOLI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|67472413|sp|P0A8V3|RPOB_ECOL6 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|67472414|sp|P0A8V4|RPOB_ECO57 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|67472415|sp|P0A8V5|RPOB_SHIFL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|88909637|sp|Q31U10|RPOB_SHIBS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|88909639|sp|Q3YUZ7|RPOB_SHISS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158512696|sp|A1AIF9|RPOB_ECOK1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158564244|sp|Q1R5V3|RPOB_ECOUT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166991523|sp|A7ZUK1|RPOB_ECO24 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166991524|sp|A8A786|RPOB_ECOHS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|189043855|sp|B1IUR0|RPOB_ECOLC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699397|sp|B7MIX3|RPOB_ECO45 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699398|sp|B5Z083|RPOB_ECO5E RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699399|sp|B7NRR5|RPOB_ECO7I RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699400|sp|B7M734|RPOB_ECO8A RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699401|sp|B1XBY9|RPOB_ECODH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699402|sp|B7NFS7|RPOB_ECOLU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699403|sp|B6I5J7|RPOB_ECOSE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699404|sp|B1LNT9|RPOB_ECOSM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699449|sp|B2TWH3|RPOB_SHIB3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765288|sp|B7UPE2|RPOB_ECO27 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765289|sp|B7LA80|RPOB_ECO55 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|259494181|sp|C5A0S7|RPOB_ECOBW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|266618717|pdb|3IYD|C Chain C, Three-Dimensional Em Structure Of An Intact Activator- Dependent Transcription Initiation Complex gi|1666534|gb|AAB18647.1| RNA polymerase beta subunit [Escherichia coli] gi|1790419|gb|AAC76961.1| RNA polymerase, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|13364386|dbj|BAB38333.1| RNA polymerase beta subunit [Escherichia coli O157:H7 str. Sakai] gi|22774032|gb|AAN07182.1| RNA polymerase beta subunit [Cloning vector pIA423] gi|30042990|gb|AAP18712.1| RNA polymerase, beta subunit [Shigella flexneri 2a str. 2457T] gi|56384051|gb|AAN45489.2| RNA polymerase, beta subunit [Shigella flexneri 2a str. 301] gi|73857958|gb|AAZ90665.1| RNA polymerase, beta subunit [Shigella sonnei Ss046] gi|81247740|gb|ABB68448.1| RNA polymerase beta subunit [Shigella boydii Sb227] gi|85676083|dbj|BAE77333.1| RNA polymerase, beta subunit [Escherichia coli str. K12 substr. W3110] gi|157069135|gb|ABV08390.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli HS] gi|157077982|gb|ABV17690.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli E24377A] gi|169756938|gb|ACA79637.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli ATCC 8739] gi|169891282|gb|ACB04989.1| RNA polymerase, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170517867|gb|ACB16045.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli SMS-3-5] gi|187428350|gb|ACD07624.1| DNA-directed RNA polymerase, beta subunit [Shigella boydii CDC 3083-94] gi|187767357|gb|EDU31201.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188490216|gb|EDU65319.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli 53638] gi|189001730|gb|EDU70716.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189354590|gb|EDU73009.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189359774|gb|EDU78193.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189365467|gb|EDU83883.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|189370171|gb|EDU88587.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189379158|gb|EDU97574.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|190901299|gb|EDV61067.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli B7A] gi|190905431|gb|EDV65062.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli F11] gi|192925943|gb|EDV80590.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli E22] gi|192958786|gb|EDV89223.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli E110019] gi|194412004|gb|EDX28317.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli B171] gi|194416989|gb|EDX33107.1| DNA-directed RNA polymerase, beta subunit [Shigella dysenteriae 1012] gi|194421277|gb|EDX37297.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli 101-1] gi|208728040|gb|EDZ77641.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208735669|gb|EDZ84356.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208740638|gb|EDZ88320.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209157310|gb|ACI34743.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209751808|gb|ACI74211.1| RNA polymerase beta prime subunit [Escherichia coli] gi|209751810|gb|ACI74212.1| RNA polymerase beta prime subunit [Escherichia coli] gi|209751812|gb|ACI74213.1| RNA polymerase beta prime subunit [Escherichia coli] gi|209751814|gb|ACI74214.1| RNA polymerase beta prime subunit [Escherichia coli] gi|209751816|gb|ACI74215.1| RNA polymerase beta prime subunit [Escherichia coli] gi|209914724|dbj|BAG79798.1| RNA polymerase beta subunit [Escherichia coli SE11] gi|215267391|emb|CAS11842.1| RNA polymerase, beta subunit [Escherichia coli O127:H6 str. E2348/69] gi|217321881|gb|EEC30305.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|218354426|emb|CAV01228.1| RNA polymerase, beta subunit [Escherichia coli 55989] gi|218363310|emb|CAR00960.1| RNA polymerase, beta subunit [Escherichia coli IAI1] gi|218367822|emb|CAR05617.1| RNA polymerase, beta subunit [Escherichia coli S88] gi|218372603|emb|CAR20478.1| RNA polymerase, beta subunit [Escherichia coli IAI39] gi|218434702|emb|CAR15634.1| RNA polymerase, beta subunit [Escherichia coli UMN026] gi|238863495|gb|ACR65493.1| RNA polymerase, beta subunit [Escherichia coli BW2952] gi|242379517|emb|CAQ34333.1| RNA polymerase, beta subunit, subunit of RNA polymerase, core enzyme, RNA polymerase sigma 70, RNA polymerase sigma 54, RNA polymerase sigma 32, RNA polymerase sigma 38, RNA polymerase sigma 28, RNA polymerase sigma 19 and RNA polymerase sigma 24 [Escherichia coli BL21(DE3)] gi|253326428|gb|ACT31030.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975829|gb|ACT41500.1| DNA-directed RNA polymerase subunit beta [Escherichia coli B str. REL606] gi|253979985|gb|ACT45655.1| DNA-directed RNA polymerase subunit beta [Escherichia coli BL21(DE3)] gi|254595385|gb|ACT74746.1| RNA polymerase, beta subunit [Escherichia coli O157:H7 str. TW14359] gi|257756745|dbj|BAI28247.1| RNA polymerase, beta subunit [Escherichia coli O26:H11 str. 11368] gi|257761934|dbj|BAI33431.1| RNA polymerase, beta subunit [Escherichia coli O103:H2 str. 12009] gi|257767054|dbj|BAI38549.1| RNA polymerase, beta subunit [Escherichia coli O111:H- str. 11128] gi|260451186|gb|ACX41608.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli DH1] gi|281181051|dbj|BAI57381.1| RNA polymerase beta subunit [Escherichia coli SE15] gi|281603373|gb|ADA76357.1| DNA-directed RNA polymerase subunit beta [Shigella flexneri 2002017] gi|284924079|emb|CBG37178.1| DNA-directed RNA polymerase, beta-subunit [Escherichia coli 042] gi|290765274|gb|ADD59235.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O55:H7 str. CB9615] gi|291321323|gb|EFE60764.1| DNA-directed RNA polymerase [Escherichia coli B088] gi|291425371|gb|EFE98411.1| DNA-directed RNA polymerase beta subunit [Escherichia coli FVEC1412] gi|291430817|gb|EFF03814.1| DNA-directed RNA polymerase [Escherichia coli B185] gi|294492658|gb|ADE91414.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli IHE3034] gi|298276230|gb|EFI17751.1| DNA-directed RNA polymerase subunit beta [Escherichia coli FVEC1302] gi|299880876|gb|EFI89087.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli MS 196-1] gi|305854607|gb|EFM55043.1| DNA-directed RNA polymerase subunit beta [Escherichia coli NC101] gi|306905545|gb|EFN36078.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli W] gi|307556130|gb|ADN48905.1| DNA-directed RNA polymerase beta chain [Escherichia coli ABU 83972] gi|307628396|gb|ADN72700.1| DNA-directed RNA polymerase subunit beta [Escherichia coli UM146] gi|309704402|emb|CBJ03751.1| DNA-directed RNA polymerase, beta-subunit [Escherichia coli ETEC H10407] gi|310331394|gb|EFP98659.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli 1827-70] gi|312290034|gb|EFR17921.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli 2362-75] gi|312948561|gb|ADR29388.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O83:H1 str. NRG 857C] gi|313648637|gb|EFS13077.1| DNA-directed RNA polymerase, beta subunit [Shigella flexneri 2a str. 2457T] gi|315063312|gb|ADT77639.1| RNA polymerase, beta subunit [Escherichia coli W] gi|315138543|dbj|BAJ45702.1| DNA-directed RNA polymerase subunit beta [Escherichia coli DH1] gi|315617350|gb|EFU97956.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli 3431] gi|320179552|gb|EFW54503.1| DNA-directed RNA polymerase beta subunit [Shigella boydii ATCC 9905] gi|320185975|gb|EFW60723.1| DNA-directed RNA polymerase beta subunit [Shigella flexneri CDC 796-83] gi|320190917|gb|EFW65567.1| DNA-directed RNA polymerase beta subunit [Escherichia coli O157:H7 str. EC1212] gi|320197118|gb|EFW71736.1| DNA-directed RNA polymerase beta subunit [Escherichia coli WV_060327] gi|320200174|gb|EFW74763.1| DNA-directed RNA polymerase beta subunit [Escherichia coli EC4100B] gi|320639077|gb|EFX08717.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O157:H7 str. G5101] gi|320644471|gb|EFX13534.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O157:H- str. 493-89] gi|320649790|gb|EFX18311.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O157:H- str. H 2687] gi|320655123|gb|EFX23079.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660767|gb|EFX28221.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|320665885|gb|EFX32916.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323161291|gb|EFZ47201.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli E128010] gi|323167457|gb|EFZ53165.1| DNA-directed RNA polymerase, beta subunit [Shigella sonnei 53G] gi|323177540|gb|EFZ63125.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli 1180] gi|323190156|gb|EFZ75434.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli RN587/1] gi|323380624|gb|ADX52892.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli KO11] gi|323933971|gb|EGB30445.1| DNA-directed RNA polymerase [Escherichia coli E1520] gi|323938896|gb|EGB35116.1| DNA-directed RNA polymerase [Escherichia coli E482] gi|323943596|gb|EGB39705.1| DNA-directed RNA polymerase [Escherichia coli H120] gi|323948841|gb|EGB44738.1| DNA-directed RNA polymerase [Escherichia coli H252] gi|323953800|gb|EGB49607.1| DNA-directed RNA polymerase [Escherichia coli H263] gi|323958913|gb|EGB54588.1| DNA-directed RNA polymerase [Escherichia coli H489] gi|323969060|gb|EGB64368.1| DNA-directed RNA polymerase [Escherichia coli TA007] gi|324115418|gb|EGC09363.1| DNA-directed RNA polymerase [Escherichia coli E1167] gi|326347163|gb|EGD70893.1| DNA-directed RNA polymerase beta subunit [Escherichia coli O157:H7 str. 1125] gi|326347586|gb|EGD71308.1| DNA-directed RNA polymerase beta subunit [Escherichia coli O157:H7 str. 1044] gi|330908304|gb|EGH36823.1| DNA-directed RNA polymerase beta subunit [Escherichia coli AA86] gi|331057159|gb|EGI29151.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli TA143] gi|331061927|gb|EGI33851.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli TA271] gi|331077038|gb|EGI48254.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli H299] gi|332083875|gb|EGI89088.1| DNA-directed RNA polymerase, beta subunit [Shigella boydii 5216-82] gi|332091111|gb|EGI96201.1| DNA-directed RNA polymerase, beta subunit [Shigella dysenteriae 155-74] gi|332092313|gb|EGI97388.1| DNA-directed RNA polymerase, beta subunit [Shigella boydii 3594-74] Length = 1342 Score = 1670 bits (4324), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|88909636|sp|Q57H69|RPOB_SALCH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1342 Score = 1670 bits (4324), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDLKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V++D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + DD VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|297180339|gb|ADI16556.1| DNA-directed RNA polymerase, beta subunit/140 kd subunit [uncultured gamma proteobacterium HF0010_01E20] Length = 1350 Score = 1669 bits (4323), Expect = 0.0, Method: Composition-based stats. Identities = 718/1358 (52%), Positives = 972/1358 (71%), Gaps = 9/1358 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK E +++P L+ +Q SY FL + ++R GL AAFKSV Sbjct: 1 MAYSFTERKRIRKDFGKLAEKMELPYLLAIQTDSYSKFLQVGTDAEDRAESGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG+A LE+V Y+ P FDV +C+ R +TYA PL++ +RLI++D + +K + Sbjct: 61 FPIVSYSGSAELEYVDYKLGEPIFDVKECVSRSITYAAPLRVKVRLIIYDK--ESSSKKV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD+KEQ +YMG++PLMT++GTFVI G +R+VVSQLHRSPG+ FDHDKG+ SGKLLY Sbjct: 119 KDVKEQEVYMGEIPLMTENGTFVINGTERVVVSQLHRSPGVFFDHDKGKTHSSGKLLYNA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L ALG SEEIL TF+ S +G Sbjct: 179 RVIPYRGSWLDFEFDPKDAVFVRIDRRRKLPASIILRALGFSSEEILETFFETNTISIKG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G S +V G+ ++E+G+++T+ ++ +++ G+K L + D Sbjct: 239 EDVAVSLIAERL-RGEVASFDIVGP-NGKTIVEAGRRITARHVRVIEDSGMKQLAVPKDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L A+DIV+ TGE+ I VI E+ L+ + +++ +Y + ++ +I +T+ Sbjct: 297 LLEQVTAKDIVDESTGEVAIPCNSVISEEVLDRLLELKVKSFETIYTNDLDCGPFISDTM 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +R ++L++IYR+MRPG+ T AE++F LFF +D+YDLS+VGR+K N RL Sbjct: 357 RIDPSSNRMESLVEIYRMMRPGEPPTKESAENLFGNLFFSNDRYDLSSVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + +EDI+ ++K L+D+RNGKGT+DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 417 EETEGEGTLSREDIVDVLKTLIDIRNGKGTVDDIDHLGNRRIRSVGEMAENQFRVGLIRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQD+INAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVKERLSLAESEGLMPQDMINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNEYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 +V +G VT +V +LSA++E IAQA++ +D G F +ELV R E ID Sbjct: 597 HRVVNGVVTKEVEFLSAIDEAQYVIAQASAPVDTKGKFIDELVDVRHQNEFTRTAPANID 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+AE P VGTGME VA Sbjct: 657 FMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERNVALD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG ++AKR G+V+ VDA R+VIR + +++ +GVDIY L KF RSNQNTC+NQRPLV Sbjct: 717 SGVCVIAKRGGVVDSVDASRVVIRVADSEVESGDAGVDIYTLTKFTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD + DI+ADGPS D+G+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FTSI Sbjct: 777 KPGDVISARDILADGPSIDMGELALGQNMRIAFMPWNGYNFEDSILVSERVVKEDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 837 HIQELTCIARDTKLGPEEITSDIPNVGEGALSKLDESGIVYIGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTS RVPS V GTV+DV++F R G++K+ER+ +ER Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSQRVPSSVKGTVIDVQVFTRDGVEKDERAKDIERA 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ + +D DDE I++ + RL L G + P G K + + ++ W+ Sbjct: 957 QLAQIRKDLDDEMRIIEVATFERLQRALVGNKVATAP-GLAKDKAIYEEYLAGLATDDWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+++ +E + + L+ +++K KI+ GDD+ PGVL++VKV++A+KR Sbjct: 1016 RIRMKDDQLNEQLERAEAHLLERREGLDAVYQDKRSKIETGDDLAPGVLKIVKVYLAIKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMPF ++G PVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISVIMPVEDMPFDENGDPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 WA G+G+KI ++ K + +R FL++V G E + +D +L +A Sbjct: 1136 WAAHGIGQKIDLML---KQQQKAAEIRKFLDEVYNHVGGAPENLKSLNDGQILEMARNLT 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+P +T FDGA E I ML +A+L SGQ+ LYDG TG+ FDRP+T+GY+YMLKLNH Sbjct: 1193 GGLPFATRAFDGASEAEIKKMLELAELPGSGQTTLYDGRTGDAFDRPITLGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGL 1359 V GRT++Y++IV G+ E G PESFNVLVKE+++LG+ Sbjct: 1313 VNGRTKMYKNIVDGDFKMEPGMPESFNVLVKEIRSLGI 1350 >gi|288937721|ref|YP_003441780.1| DNA-directed RNA polymerase subunit beta [Klebsiella variicola At-22] gi|290513229|ref|ZP_06552590.1| DNA-directed RNA polymerase, beta subunit [Klebsiella sp. 1_1_55] gi|288892430|gb|ADC60748.1| DNA-directed RNA polymerase, beta subunit [Klebsiella variicola At-22] gi|289774326|gb|EFD82333.1| DNA-directed RNA polymerase, beta subunit [Klebsiella sp. 1_1_55] Length = 1342 Score = 1669 bits (4322), Expect = 0.0, Method: Composition-based stats. Identities = 713/1364 (52%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D ++ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVASKDYIDEATGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDENGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIYAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLQLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|206579488|ref|YP_002241076.1| DNA-directed RNA polymerase, beta subunit [Klebsiella pneumoniae 342] gi|226699413|sp|B5XYF5|RPOB_KLEP3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|206568546|gb|ACI10322.1| DNA-directed RNA polymerase, beta subunit [Klebsiella pneumoniae 342] Length = 1342 Score = 1669 bits (4322), Expect = 0.0, Method: Composition-based stats. Identities = 714/1364 (52%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D ++ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVASKDYIDEATGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDENGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L +D + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIYAVLVAGGV-------------EADKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLQLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|16762300|ref|NP_457917.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|41018098|sp|Q8Z320|RPOB_SALTI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|25288392|pir||AE0933 DNA-directed RNA polymerase, beta-chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504604|emb|CAD09487.1| DNA-directed RNA polymerase, beta-subunit [Salmonella enterica subsp. enterica serovar Typhi] Length = 1342 Score = 1669 bits (4321), Expect = 0.0, Method: Composition-based stats. Identities = 714/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V++D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+ LRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSFLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + DD VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|302877794|ref|YP_003846358.1| DNA-directed RNA polymerase, beta subunit [Gallionella capsiferriformans ES-2] gi|302580583|gb|ADL54594.1| DNA-directed RNA polymerase, beta subunit [Gallionella capsiferriformans ES-2] Length = 1359 Score = 1669 bits (4321), Expect = 0.0, Method: Composition-based stats. Identities = 705/1365 (51%), Positives = 966/1365 (70%), Gaps = 7/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK + +P L+ Q ++ FL AP++R NEGLQAAF + Sbjct: 1 MSYSFTEKKRIRKSFGKRIGALPVPFLLSTQLEAFAAFLQEATAPEKRKNEGLQAAFNGI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + S A L+FVSY P FDV +C R LTYA PL+ +RL + D ++ Sbjct: 61 FPIESHSKNARLDFVSYMLGTPAFDVKECQQRGLTYASPLRARVRLTIMDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEMPLMTNTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD ++ RIDRRRK+PVT L +LG +E++L FY + Sbjct: 179 RIIPYRGSWLDFEFDAKDYVYFRIDRRRKMPVTILLRSLGYTNEDMLGMFYEFDTFQLGK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 A+ + G ++D +G+ ++ + K++T ++ ++E G+ L + D Sbjct: 239 KGGIQFEVVAERLRGEIARFDILD-KSGKTIVATDKRITVRHIRQMQEAGIDKLAVADDF 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A ++++ E+GEI A DV+ E+ L ++ + + + LY + ++ AYI TL Sbjct: 298 LLGRVIANNVIDKESGEIIANANDVMTEELLRKLQDANVTKLNTLYTNDLDQGAYISQTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D+ A + IYR+MRPG+ T E +FN LFF ++YDLS VGR+K N R+ Sbjct: 358 RTDETTDKWTARVAIYRMMRPGEPPTEESVEGLFNGLFFSEERYDLSVVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDI+A++KILV+LRNG+G IDDID+LGNRRVR+VGE+ +NQ+R+GL R+ Sbjct: 418 EELTGSPILSNEDIVAVVKILVELRNGRGEIDDIDHLGNRRVRAVGELAENQFRVGLARV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + D++MP DLINAKP+ +A+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 478 ERAVKERLGQAEADNLMPHDLINAKPISAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRIS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGFIETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNEYGFIETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +G V+NDV YLSA+EE IAQAN+ LD+ G FT+++V R E +L + I+ Sbjct: 598 RKVTNGCVSNDVDYLSAIEESTYTIAQANAELDKKGRFTDDIVSARRHNEFVLAAPDTIN 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP QVVS+AA LIPFLE+DD+NR LMG NM RQAVP L+AE P VGTG+E VA Sbjct: 658 YMDVSPSQVVSVAACLIPFLEHDDANRALMGANMSRQAVPCLRAEKPLVGTGIERTVALD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG A+ A R G ++ VDA RIV+R + + GVDIY L+K+ RSNQNT +NQRPLV Sbjct: 718 SGTAVQAIRGGRIDYVDAARIVVRVNDEETTAGEVGVDIYNLIKYTRSNQNTNINQRPLV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD + R D++ADG STD+G+LALG+N+LVAFMPW+GYN+EDS+LISER++++D FTSI Sbjct: 778 KVGDVIARGDVVADGASTDMGELALGQNVLVAFMPWNGYNYEDSILISERIIAQDRFTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLG EEITRDIPN+SE L +D+CGI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELTVVARDTKLGTEEITRDIPNLSEVQLGRLDDCGIVHIGAEVAVGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRV +G SGTV+DV++F R G+ +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVSAGSSGTVIDVQVFTREGLQRDKRAQQIVDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ +D D+ I++ + ++RL ++L + A GPK K ++L++D +S QW+ Sbjct: 958 ELNRYKKDLADQMRIVESDAFTRLEKLLLDKVANGGPKKLAKGSLLTADYLSGVEHHQWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++V +E +K + + F+ K +K+ GD++ GV ++VKV+VA+KR Sbjct: 1018 DIRLADDEVAAQMEQVKDGLAQKRLEFDAAFELKKKKMTQGDELQAGVQKMVKVYVAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++SRI+P EDMP++ DGTPVD+VLNPLGVPSRMN+GQI ETHLG Sbjct: 1078 RLQPGDKMAGRHGNKGVISRIVPVEDMPYMADGTPVDVVLNPLGVPSRMNIGQILETHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI-GTGSHTEKISDYDDDSVLRVAEQWK 1201 WA GLGKKI ++ + N I+ LR FL+K+ + + DD ++ + + Sbjct: 1138 WAANGLGKKIDQML---QTNAKITELRGFLDKIYNNNNGQSVDFKSFTDDEIIELCRNLR 1194 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP +TPVFDGA EE I ML +ADL SGQ+ L+DG TGE FDRPVTVGY ++LKL+H Sbjct: 1195 KGVPFATPVFDGASEEEIKYMLALADLPLSGQTTLHDGRTGEAFDRPVTVGYKHVLKLHH 1254 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1255 LVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1314 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT+VYE+IV G+ + G PESFNV++KE+++L + +DLE + Sbjct: 1315 VAGRTKVYENIVKGDHKIDAGMPESFNVVIKEIRSLAIDMDLERN 1359 >gi|320172752|gb|EFW47986.1| DNA-directed RNA polymerase beta subunit [Shigella dysenteriae CDC 74-1112] Length = 1342 Score = 1669 bits (4321), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI++ ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQKLACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|218692268|ref|YP_002400480.1| DNA-directed RNA polymerase subunit beta [Escherichia coli ED1a] gi|254765290|sp|B7MRB3|RPOB_ECO81 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|218429832|emb|CAR10801.2| RNA polymerase, beta subunit [Escherichia coli ED1a] Length = 1342 Score = 1669 bits (4321), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 973/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + ++ + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVSVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|58038861|ref|YP_190825.1| DNA-directed RNA polymerase subunit beta [Gluconobacter oxydans 621H] gi|58001275|gb|AAW60169.1| DNA-directed RNA polymerase beta chain [Gluconobacter oxydans 621H] Length = 1447 Score = 1669 bits (4321), Expect = 0.0, Method: Composition-based stats. Identities = 806/1391 (57%), Positives = 1053/1391 (75%), Gaps = 31/1391 (2%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 A F G R+RK FG+ PEI +P+LI+VQ+ASY+ FL MN++PD R + GLQ F+S Sbjct: 60 AITKSFTGRKRIRKSFGRIPEIAPMPNLIDVQRASYEAFLQMNVSPDSRQDAGLQEVFRS 119 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI F+G L+F+SYEF+ PK+DV++C+ R LTYA PLK+ LRL +D+DE TG++S Sbjct: 120 VFPINDFAGRGRLDFMSYEFEDPKYDVEECIQRGLTYAAPLKVILRLTTWDIDEDTGSRS 179 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 I D+KEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 180 IHDMKEQPVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFA 239 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL-------------------- 221 R+IP +G W+D EFD+KD+I+VRIDR+RK+PVT+ L AL Sbjct: 240 ARVIPYRGSWLDFEFDAKDLIYVRIDRKRKLPVTTLLYALEGANYLAQREQKIAEGGDVE 299 Query: 222 -----GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIES 276 GMD +EILS FY + +++ G W P D G K+ S LVD DTGE V E+ Sbjct: 300 GLDIRGMDQDEILSYFYEAVPFTRLGGEWARPFDP-DAFRGLKLLSPLVDADTGEVVAEA 358 Query: 277 GKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEI 336 KLT+ +++ + EK + + + + G ++A D+VN TGEIY EAG+ + E L + Sbjct: 359 DAKLTARMVRKIAEK-TRVVQVGRLDILGRFLAYDLVNENTGEIYGEAGEELTEDRLAAL 417 Query: 337 FHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMF 396 I ++P+L VD ++ +IRNTL DKN R +AL+DIYR+MRPG+ T AE+MF Sbjct: 418 EEMGITELPLLSVDG-SHGPWIRNTLAADKNSCRDEALIDIYRIMRPGEPPTKETAEAMF 476 Query: 397 NFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 + LFFD +YDLS VGRVKMNMRL++D PD +R +RKEDI+ IKI+ +L++G+G IDDI Sbjct: 477 HGLFFDQGRYDLSAVGRVKMNMRLDVDAPDTLRVLRKEDILRTIKIMCELKDGRGQIDDI 536 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEF 516 DNLGNRRVRSVGE+++NQYR+GLLRMER+I+ER+ SVDID+VMP DLINAKP +AV EF Sbjct: 537 DNLGNRRVRSVGELMENQYRVGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREF 596 Query: 517 FCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSE 576 F SSQLSQ + N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET+ Sbjct: 597 FGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETAG 656 Query: 577 GHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDE 636 NIGL++SL+++A+VN YGFIETPYR V +G + + YLSAMEEE +AQA++ D+ Sbjct: 657 RPNIGLINSLSTYAKVNKYGFIETPYRLVEEGVLQDGWKYLSAMEEEKLVVAQADAKQDD 716 Query: 637 DGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNM 696 G T+ELV R +G+ +VP +++ D SPKQ+VS+AA+LIPFLENDD+NR LMG NM Sbjct: 717 QGRLTDELVSVRRSGDFRVVPPDQVTACDVSPKQLVSVAAALIPFLENDDANRALMGANM 776 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPST 756 QRQAVPL+KA+AP VGTGME+ VA SGA IVAKR G+++Q+D RIV+R+ + +T Sbjct: 777 QRQAVPLVKADAPLVGTGMEAAVAHDSGATIVAKRRGVIDQIDGARIVVRATDEAG--AT 834 Query: 757 SGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 GVDIYRL K+ RSNQ+TC+NQRPLVKVGD V DIIADGPST+LG+LALGRN+LVAFM Sbjct: 835 QGVDIYRLRKYMRSNQSTCINQRPLVKVGDTVHAGDIIADGPSTELGELALGRNVLVAFM 894 Query: 817 PWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNI 876 PW+GYNFEDS+LISER+ +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE L+N+ Sbjct: 895 PWNGYNFEDSILISERIARDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNL 954 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 DE GI+ VGAEVNPGDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSL++P G + Sbjct: 955 DEAGIVYVGAEVNPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGTT 1014 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 GT+VDVR+F+R G+DK+ER++++ER +IE L +D+DDE+ I +R+ Y+RL E L GQ A Sbjct: 1015 GTIVDVRVFSRRGVDKDERAMAIERAEIERLTKDRDDERGIQERSFYNRLRERLIGQTAG 1074 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 +G KG + T ++ +++ E+ R+ W V ++V +E L+ +++ + ++ RF +K Sbjct: 1075 AGFKGIRSGTPITEEVLDEHHRATWASITVTSDEVMAELEKLRGEFKEATRRIDARFDSK 1134 Query: 1057 IEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGT 1116 +EK+Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG+VSR++P EDMPFL++G Sbjct: 1135 VEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLENGQ 1194 Query: 1117 PVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDIS-PLRSFLEKV 1175 VDIVLNPLGVPSRMN+GQI ETHLGWAC +G I ++++Y+ G+ L L +V Sbjct: 1195 AVDIVLNPLGVPSRMNIGQILETHLGWACANIGASIGDMVDEYQRTGERKQELLDRLHEV 1254 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 G E ++ ++ ++ +A + G+P++TPVFDGA I ML A +++SGQS Sbjct: 1255 YGDVIFNEDVATLPNEQLIELANNLRKGLPIATPVFDGASIPDIEEMLEKAGVNKSGQSQ 1314 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 L DG TGEPF+R TVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1315 LIDGRTGEPFERQTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG 1374 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV D FE G PESFNVL+KE++ Sbjct: 1375 EMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVREQDDFEAGIPESFNVLIKELK 1434 Query: 1356 ALGLSIDLENS 1366 +LGL+++LE S Sbjct: 1435 SLGLNVELEQS 1445 >gi|297518012|ref|ZP_06936398.1| DNA-directed RNA polymerase subunit beta [Escherichia coli OP50] Length = 1342 Score = 1668 bits (4320), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 973/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA + Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVN 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|15804577|ref|NP_290618.1| DNA-directed RNA polymerase subunit beta [Escherichia coli O157:H7 EDL933] gi|25288387|pir||C86090 RNA polymerase, beta subunit [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12518912|gb|AAG59183.1|AE005630_3 RNA polymerase, beta subunit [Escherichia coli O157:H7 str. EDL933] Length = 1342 Score = 1668 bits (4320), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q + +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QXKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|311281463|ref|YP_003943694.1| DNA-directed RNA polymerase, beta subunit [Enterobacter cloacae SCF1] gi|308750658|gb|ADO50410.1| DNA-directed RNA polymerase, beta subunit [Enterobacter cloacae SCF1] Length = 1342 Score = 1668 bits (4320), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIASYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELLPERL-RGETASFDIE--ANGKIYVEKGRRITARHIRQLEKDEIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A + L ++ S + I L+ + +++ Y+ T+ Sbjct: 292 IAGKVAAKDYVDESTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYMSETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LD+DG F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDDDGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGLVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIYAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLQLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|307776497|pdb|3LU0|C Chain C, Molecular Model Of Escherichia Coli Core Rna Polymerase gi|42818|emb|CAA23625.1| rpoB [Escherichia coli] gi|42821|emb|CAA23627.1| unnamed protein product [Escherichia coli] gi|223475|prf||0808236A polymerase beta,RNA Length = 1342 Score = 1668 bits (4320), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMVQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|94500503|ref|ZP_01307034.1| DNA-directed RNA polymerase, beta subunit [Oceanobacter sp. RED65] gi|94427293|gb|EAT12272.1| DNA-directed RNA polymerase, beta subunit [Oceanobacter sp. RED65] Length = 1359 Score = 1668 bits (4319), Expect = 0.0, Method: Composition-based stats. Identities = 716/1367 (52%), Positives = 990/1367 (72%), Gaps = 11/1367 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D+P L+ +Q SY FL + D R + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFGKLPRVMDVPYLLAIQLDSYRSFLQADKGVDARGDIGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG+A LE+VSY P FD +C+ R +TYA PL++ +RLI++D D + K+I Sbjct: 61 FPIVSYSGSAALEYVSYRLGVPVFDEKECMLRGVTYAAPLRVKVRLIIYDKD--SSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTF+I G +R++VSQLHRSPG+ FDHDKG++ SGKLLY Sbjct: 119 KDIKEQEVYMGEMPLMTDNGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYNA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD+++VRIDRRRK+P T L ALG +S+++L F+ G Sbjct: 179 RVIPYRGSWLDFEFDPKDLVYVRIDRRRKLPATILLRALGFESQQMLEMFFDNDKLEIVG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S L D G+ ++E G+++T+ ++ ++++G+ L + SD Sbjct: 239 DTVRLELIPERL-RGETASFDLKDPK-GKVIVEEGRRITARHIRQMEKEGMTSLEVPSDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A+DIV+ TGE+ E I + LE++ + I++I +Y + ++ ++I +TL Sbjct: 297 IFGKVIAKDIVDPSTGELVAECNSEITVELLEKLTSAGIKEIETIYSNELDCGSFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ + +AL++IYR+MRPG+ T AE +F LFF ++YDLS+VGR+K N RL Sbjct: 357 RIDPSRTQLEALVEIYRMMRPGEPPTKESAEGLFENLFFTDERYDLSSVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + +DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 417 EEVEGEGTLSNDDIIDVLKELIGIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + + +MPQDLINAKPV +A+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 ERAVRERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+++AR N YGF+ETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+D+ Y+SA++E IAQA++ +DEDG T +L+ R E + P E + Sbjct: 597 RKVVDGKVTDDINYISAIDEAKYTIAQASAPVDEDGRLTGDLISVRHKNEFTVTPPENVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SP+QV+S+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG+ES VA+ Sbjct: 657 LMDVSPQQVISVAASLIPFLEHDDANRALMGSNMQRQAVPTLVADKPLVGTGIESNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G ++ VDA RIV+R + ++ +GVDIY L K+ RSNQNTC+NQ+PLV Sbjct: 717 SGVCVVAKRGGKIDSVDASRIVVRVNDDEVQAGEAGVDIYNLTKYTRSNQNTCINQKPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD V R DI+ADGPS DLG+LALG+NM +AFMPW+GYNFEDS+L+SE++ ED T+I Sbjct: 777 RQGDSVVRGDIMADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILLSEKVAQEDRLTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEI+ DIPNV E L +DE G++ +GAEVNPGDILVGK+TPKG Sbjct: 837 HIQELTCVARDTKLGPEEISADIPNVGESALSKLDESGVVYIGAEVNPGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRV +G +GTV+DV++F R G++K++R++ +E+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVKTGTTGTVIDVQVFTRDGVEKDQRALDIEKS 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEY-PRSQW 1021 Q++ + +D ++E I++ + RL L G + P G KK VLS++ Q Sbjct: 957 QLDKVRKDLNEEFRIVEEATFERLKRSLDGVKVAAAP-GLKKGDVLSAEYFDGLESSDQL 1015 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 ++ QDE+ +E + + +L+++F++K +K+Q GDD+ PGVL++VKV++A+K Sbjct: 1016 FKIRPQDEEAAELLERAEEALTDRRKLLDEKFEDKKKKLQTGDDLAPGVLKIVKVYLAIK 1075 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S I+P EDMP+ + G PVD+VLNPLGVPSRMNVGQI ETHL Sbjct: 1076 RKIQPGDKMAGRHGNKGVISAIMPIEDMPYDEKGVPVDLVLNPLGVPSRMNVGQILETHL 1135 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG--TGSHTEKISDYDDDSVLRVAEQ 1199 G A GLG+KI +I + I+ +R FL ++ E + + D+ ++ +A Sbjct: 1136 GMAAKGLGEKINEMI---RQQKAIAEIRDFLGQIYNHSDEVKQEALDTFSDEEIMELAGN 1192 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 GVP++TP FDGA E + S+LR+AD+ +SGQ L+DG TG+ FDRPVTVGY+YMLKL Sbjct: 1193 LVGGVPMATPAFDGAQESEVKSLLRLADVPDSGQVTLFDGRTGDQFDRPVTVGYMYMLKL 1252 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1253 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1312 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LEN Sbjct: 1313 DDVAGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELEND 1359 >gi|296282035|ref|ZP_06860033.1| DNA-directed RNA polymerase subunit beta [Citromicrobium bathyomarinum JL354] Length = 1397 Score = 1667 bits (4318), Expect = 0.0, Method: Composition-based stats. Identities = 822/1381 (59%), Positives = 1060/1381 (76%), Gaps = 14/1381 (1%) Query: 1 MAKGVVFNG--LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAA 58 M +G G R+RK FG E++ +P+LIEVQ+ SY+ FL + D GL+ Sbjct: 14 MKRGTAKTGTAKRRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSDKEIDYVS--GLEKT 71 Query: 59 FKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 +SVFPI F+G A L+FV YE +PPK+D +C R +TYA P+++TLRLIVF+VD+ T Sbjct: 72 LRSVFPIRDFAGTAELDFVDYELEPPKYDTTECRQRGITYAAPMRVTLRLIVFEVDQDTE 131 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 A+S+ DIKEQ +YMGD+PLMT++GTF++ G +R++VSQ+HRSPG+ FDHD+G+ SGKL Sbjct: 132 ARSVLDIKEQEVYMGDMPLMTENGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHSSGKL 191 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 L+A R+IP +G W+D EFD+KDI++VRIDR+RK+PVTS L LG+DSEEIL FY +V+ Sbjct: 192 LFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYGLGLDSEEILHHFYDTVVW 251 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + D W P A GAK + LVD TGE+V + +K++ ++ G++ L + Sbjct: 252 QRAKDGWTIPFVAE-QWRGAKPTFPLVDAKTGEEVFPANQKISPRAANKAEKDGLETLLL 310 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 S+ + Y A D+++ TG IYIEAGD + + LE + + + + +L +D VN +I Sbjct: 311 PSEEIFSRYAARDMIDESTGRIYIEAGDEVTPEHLEVLDAAGVDQVELLDIDEVNTGPWI 370 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL DK ++R + L IY+VMRPG+ T AE++F LFFDS++YDLS VGRVK+NM Sbjct: 371 RNTLKADKAENRDEGLEAIYKVMRPGEPPTKETAEALFEGLFFDSERYDLSAVGRVKLNM 430 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 RL LD D V +RKEDI+A++K LV L++GKG +DDIDNLGNRRVRSVGE+L+NQYR+G Sbjct: 431 RLELDAEDTVTTLRKEDILAVVKELVGLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVG 490 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LLRMER++KER+SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH Sbjct: 491 LLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHK 550 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RR+SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL SF+RVN YGFI Sbjct: 551 RRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGFI 610 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV DGKVT+DVVYLSAMEE+ +AQA++ LDE+GSF EELV R +G+ ++ PR Sbjct: 611 ETPYRKVVDGKVTSDVVYLSAMEEQKHTVAQASAELDENGSFVEELVSARQSGDNLMAPR 670 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 E I +D SPKQ+VS+ ASLIPFLENDD+NR LMG NMQRQAVPL+KAEAP+VGTGME Sbjct: 671 ETITLMDVSPKQLVSVGASLIPFLENDDANRALMGANMQRQAVPLVKAEAPWVGTGMEET 730 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ SGAAI A+R GIV+QVDA RIVIR+ GD++P SGVDIY L KFQRSNQ+TC+NQ Sbjct: 731 VARDSGAAITARRGGIVDQVDATRIVIRA-IGDVEPGQSGVDIYTLQKFQRSNQDTCINQ 789 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVG+ V + D+IADGPSTDLG+LALG+N LVAFMPW+GYN+EDS+LISER+V +DV Sbjct: 790 RPLVKVGETVEQGDVIADGPSTDLGELALGKNSLVAFMPWNGYNYEDSILISERIVKDDV 849 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVMARDTKLGPE+ITRDIPNV EE L+N+DE GI+ +GAEV+PGDIL GKI Sbjct: 850 FTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILCGKI 909 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GV+GTVV+VR+FNRHGI+ ++R+ + Sbjct: 910 TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIEIDDRTRA 969 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 ++ E+IE L +D DE+ IL+R Y+RL ++L GQ A + PKG KK T L+ ++I R Sbjct: 970 IQNEEIERLRKDSADERAILNRATYNRLKDMLVGQTASAAPKGIKKGTELTDEVIESVDR 1029 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 +W++FAV+D+ Q +E++K QY+ + +++ +F+++ EK++ GD++ PGVL++VKVFV Sbjct: 1030 HEWFKFAVEDDDRQAQLEAIKGQYDDAVKVIDAKFEDRKEKLERGDELAPGVLKMVKVFV 1089 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR +Q GDKMAGRHGNKG++SRILP EDMPFL DGTPVDIVLNPLGVPSRMNVGQIFE Sbjct: 1090 AVKRKLQPGDKMAGRHGNKGVISRILPEEDMPFLADGTPVDIVLNPLGVPSRMNVGQIFE 1149 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISP-------LRSFLEKVIGTGSHTEKISDYDDD 1191 THLG A G +IK + D++A + ++ L+++ G + + I + Sbjct: 1150 THLGMAARSFGHQIKDALEDWRAKNPDAEPGEPPAVIKDKLKEIYG-EDYHDSIDSRSGE 1208 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 + +A GVP+ TPVFDGA E + + L + LD GQSIL+DG TG+ F R VTV Sbjct: 1209 EIAELAGNLTRGVPMGTPVFDGARESDVTTQLTKSGLDADGQSILFDGRTGDAFHRKVTV 1268 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G IYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L Sbjct: 1269 GIIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTL 1328 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNS 1371 QEMLT+KSDDVVGR +VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L++ ++ Sbjct: 1329 QEMLTVKSDDVVGRQKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKSIADEDD 1388 Query: 1372 A 1372 Sbjct: 1389 E 1389 >gi|242241127|ref|YP_002989308.1| DNA-directed RNA polymerase subunit beta [Dickeya dadantii Ech703] gi|242133184|gb|ACS87486.1| DNA-directed RNA polymerase, beta subunit [Dickeya dadantii Ech703] Length = 1342 Score = 1667 bits (4318), Expect = 0.0, Method: Composition-based stats. Identities = 712/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG+A L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGSAELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ KIVY Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYSTEDILGLFFDKIVYEINN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ G++ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ADGKVYVEKGRRITARHIRQLEKDGIERIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A+D V+ TGE+ A + L + + + I L+ + +++ Y+ T+ Sbjct: 292 IAGKVLAKDYVDTSTGEVIAMANMELSLDLLARLSQAGHKRIETLFTNDLDHGPYMSETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DAIEGSGILSKEDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQAN++LD++G F +ELV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFIDELVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ ++L ++ + + PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHDVLVAGGV-------------EAEKLGKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+A+ K Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGSGVRQKVDLNTFSDEEVLRLADNLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|288549953|ref|ZP_05968754.2| DNA-directed RNA polymerase, beta subunit [Enterobacter cancerogenus ATCC 35316] gi|288316949|gb|EFC55887.1| DNA-directed RNA polymerase, beta subunit [Enterobacter cancerogenus ATCC 35316] Length = 1353 Score = 1667 bits (4318), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 969/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 12 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 67 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 68 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 125 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 126 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 185 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 186 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQYTTEQILDLFFEKVIFEIRD 245 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 246 NKLQMELVPERL-RGETASFDIE--ADGKVYVEKGRRITARHIRQLEKDDIKLIEVPVEY 302 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A + L ++ S + I L+ + +++ AYI T+ Sbjct: 303 IAGKVSAKDYVDESTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETI 362 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 363 RVDPTTDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 422 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 423 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 482 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 483 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 542 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 543 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 602 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 603 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 662 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 663 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 722 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 723 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 782 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 783 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 842 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 843 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 902 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 903 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 962 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L + ++ + + PR +W Sbjct: 963 QLKQAKKDLSEELQILEAGLFSRIYAVLVAGG-------------IEAEKLDKLPRDRWL 1009 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1010 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1069 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1070 QIQPGDKMAGRHGNKGVISKINPIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1129 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + DD VLR+AE + Sbjct: 1130 MAAKGIGDKINAMLKQQEEVAKLREFIQRAYDLGTDVRQKVDLNTFSDDEVLRLAENLRK 1189 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1190 GMPIATPVFDGAKEAEIKELLQLGGLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1249 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1250 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1309 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1310 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1353 >gi|301069211|dbj|BAJ11985.1| mutated RNA polymerase beta subunit [Escherichia coli] Length = 1342 Score = 1667 bits (4318), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ S K+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSDKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|157147219|ref|YP_001454538.1| DNA-directed RNA polymerase subunit beta [Citrobacter koseri ATCC BAA-895] gi|157084424|gb|ABV14102.1| hypothetical protein CKO_03002 [Citrobacter koseri ATCC BAA-895] Length = 1353 Score = 1667 bits (4318), Expect = 0.0, Method: Composition-based stats. Identities = 711/1364 (52%), Positives = 969/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 12 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 67 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 68 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 125 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 126 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 185 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 186 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQYTTEQILDLFFEKVIFEIRD 245 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 246 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 302 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 303 IAGKVASKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 362 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 363 RIDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 422 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 423 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 482 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 483 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 542 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 543 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 602 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 603 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 662 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 663 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 722 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 723 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 782 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 783 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 842 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 843 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 902 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 903 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 962 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 963 QLKQAKKDLSEELQILEAGLFSRIHAVLVSGGV-------------EAEKLDKLPRDRWL 1009 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1010 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1069 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1070 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1129 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE + Sbjct: 1130 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRK 1189 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1190 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERSVTVGYMYMLKLNHL 1249 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1250 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1309 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1310 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1353 >gi|182676599|sp|A8AKT9|RPOB_CITK8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1342 Score = 1667 bits (4317), Expect = 0.0, Method: Composition-based stats. Identities = 711/1364 (52%), Positives = 969/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVASKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RIDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIHAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERSVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|56477587|ref|YP_159176.1| DNA-directed RNA polymerase subunit beta [Aromatoleum aromaticum EbN1] gi|81357338|sp|Q5P339|RPOB_AZOSE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|56313630|emb|CAI08275.1| DNA-directed RNA polymerase, beta chain [Aromatoleum aromaticum EbN1] Length = 1377 Score = 1667 bits (4317), Expect = 0.0, Method: Composition-based stats. Identities = 711/1383 (51%), Positives = 962/1383 (69%), Gaps = 27/1383 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++++P L+ Q S+ FL + P R N GLQAAF S+ Sbjct: 1 MAYSYTEKKRIRKSFAKRAAVLNVPFLLATQIESFASFLQADTPPPSRLNHGLQAAFTSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI++ SG A LEFV Y P FDV +C R LT+A PL+ +RL++ D D ++ Sbjct: 61 FPISSHSGNARLEFVQYMLGEPAFDVKECQQRGLTFASPLRARVRLVILDRDAPKE--TV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ R+DRRRK+P T L A+GM EEIL+TF+ + RG Sbjct: 179 RIIPYRGSWLDFEFDPKDALYFRVDRRRKMPATILLRAIGMGPEEILATFHDFDAFHLRG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + F L D + G + D G ++ K++T+ ++ L + GVK + + + Sbjct: 239 NEAAFELVP-DRLRGDVAKFDITDGA-GNVIVARDKRITAKHIRELDQAGVKMISVPDEF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A +IV+ ETGEI A D I E L+++ + ++D+ LYV+ ++ AYI TL Sbjct: 297 LLGRIIARNIVDAETGEIVARANDEITEDLLDKLRDAGVKDLETLYVNDLDRGAYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++F LF+ ++YDLS+VGR+K N R Sbjct: 357 RIDETADQWAARVAIYRMMRPGEPPTEDAVEALFQGLFYSEERYDLSSVGRMKFNRRAYP 416 Query: 423 DT--------------------PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNR 462 + + + EDI+A+I +LV+LRNG+G IDDID+LGNR Sbjct: 417 EKIEDKAPSWLKRFYETVGPRGEEGPATLSNEDILAVIGVLVELRNGRGEIDDIDHLGNR 476 Query: 463 RVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQL 522 RVRSVGE+ +NQ+R GL+R+ER++KER+S + D++MP DLINAKP+ +A+ EFF SSQL Sbjct: 477 RVRSVGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPISAAIKEFFGSSQL 536 Query: 523 SQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGL 582 SQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL Sbjct: 537 SQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 596 Query: 583 VSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE 642 ++SL +A+ N +GF+ETPYRKV D KVT+ + +LSA+EE IAQAN+ +D DG Sbjct: 597 INSLAVYAQTNRHGFLETPYRKVVDSKVTDQIDFLSAIEEGQYVIAQANAEIDADGMLEG 656 Query: 643 ELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP 702 +LV CR GE L +++ ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP Sbjct: 657 DLVSCRHKGEFALSTADQVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVP 716 Query: 703 LLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 L+ E P VGTG+E VA SG A+ A R GIV+ VDA RIV+R + + GVDIY Sbjct: 717 CLRPEKPLVGTGIERTVAVDSGTAVQAMRGGIVDYVDANRIVVRVNDDETLAGEVGVDIY 776 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 ++K+ RSNQNT +NQRP+VKVGD + + D+IADG STDLG+LALG+NMLVAFMPW+GYN Sbjct: 777 NMIKYTRSNQNTNINQRPVVKVGDHIGKGDVIADGASTDLGELALGQNMLVAFMPWNGYN 836 Query: 823 FEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGII 882 FEDS+LISER+V+ED FTSIHIEE V+ARDTKLGPEEITRDI ++ E L +DE GI+ Sbjct: 837 FEDSILISERVVAEDRFTSIHIEELTVVARDTKLGPEEITRDIASLGEAQLSRLDESGIV 896 Query: 883 CVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDV 942 +GAEV+ GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV SG++GTV+DV Sbjct: 897 YIGAEVDAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVSSGMNGTVIDV 956 Query: 943 RIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 ++F R GI++++R+ S+ + + D D+ I++R+ ++R+ ++ GQ A GPK Sbjct: 957 QVFTREGIERDKRAQSIIDDMLRSFKTDLADQMRIVERDAFARIRRLIVGQKANGGPKKL 1016 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 K T ++ + + W+ + DE++ +E+++ E ++ + F+ K +K+ Sbjct: 1017 LKGTAITGEYLDSLEFYHWFDIRMADEELAAQLEAIREGLEKTRKDFDQAFEIKKKKLTQ 1076 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++PPGV ++VKV++A+KR +Q GDKMAGRHGNKG+VSRI+P EDMP + DGTPVDIVL Sbjct: 1077 GDELPPGVQKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSRIVPIEDMPHMADGTPVDIVL 1136 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182 NPLGVPSRMN+GQI ETHLGWA LG KI +++ +AN + +R LE + Sbjct: 1137 NPLGVPSRMNIGQILETHLGWASKALGNKIGTML---RANAAAAEVRELLEHIYNDNGRP 1193 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242 E + DD V+ +A GVP +TPVFDGA EE I +M +A L GQ LYDG TG Sbjct: 1194 EDMGSLKDDEVIELASNLSKGVPFATPVFDGAKEEEIEAMFELAGLQPGGQVTLYDGRTG 1253 Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302 + FDR VTVGY ++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW + Sbjct: 1254 DAFDRQVTVGYKHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1313 Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +AYGAAY LQEMLT+KSDDV GRT+VYESIV G + G PESFNVLVKE+++L + ID Sbjct: 1314 EAYGAAYTLQEMLTVKSDDVTGRTKVYESIVKGEHKIDAGMPESFNVLVKEIRSLAIDID 1373 Query: 1363 LEN 1365 L+ Sbjct: 1374 LDT 1376 >gi|251791443|ref|YP_003006164.1| DNA-directed RNA polymerase subunit beta [Dickeya zeae Ech1591] gi|247540064|gb|ACT08685.1| DNA-directed RNA polymerase, beta subunit [Dickeya zeae Ech1591] Length = 1342 Score = 1667 bits (4316), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPISSYSGNSELQYVSYRLGEPVFDVQECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +EEIL F+ K+VY Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYSTEEILDLFFDKVVYEIHN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ G++ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ADGKVYVEKGRRITARHIRQLEKDGIERIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A+D V+ TGE+ A + L ++ + + I L+ + +++ Y+ T+ Sbjct: 292 IAGKVLAKDYVDESTGEVIAMANMELSLDLLAKLSQAGHKRIDTLFTNDLDHGPYMSETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQAN++LD++G F +ELV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFIDELVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEEEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ ++L +D + + PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHDVLVAGGV-------------EADKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ ++ + + ++ + D+ VLR+AE K Sbjct: 1119 MAAKGIGDKINAMLKQHQEVAKLREFIQRAYDLGNDVRQKVDLNTFSDEEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKENEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|256821655|ref|YP_003145618.1| DNA-directed RNA polymerase subunit beta [Kangiella koreensis DSM 16069] gi|256795194|gb|ACV25850.1| DNA-directed RNA polymerase, beta subunit [Kangiella koreensis DSM 16069] Length = 1355 Score = 1666 bits (4315), Expect = 0.0, Method: Composition-based stats. Identities = 718/1366 (52%), Positives = 980/1366 (71%), Gaps = 12/1366 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG+ I+D+P L+ +QK SY FL P + GL +AFKS+ Sbjct: 1 MAYSYTEKKRIRKDFGRRSNILDVPYLLAIQKDSYREFLE----PRGDEDSGLDSAFKSI 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 F I ++SG A LE+V Y P F+V +C R +TYA PL++ +RL+++D D T K + Sbjct: 57 FAIESYSGNAALEYVGYSLGEPVFNVKECQIRGITYAAPLRVKIRLVIYDKDSKT--KKV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ ++MG+LPLMT++GTFVI G +R++VSQLHRSPG+ FD D+G+ SGKLLY Sbjct: 115 KDIREQEVFMGELPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDRGKTHSSGKLLYQA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD+++VRIDRRRK+P + L +LG +++++L F+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDMLYVRIDRRRKLPASIILRSLGYNTQDMLDMFFERNNFYITK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + G + + G+ V+E G+++T + L++ GVK L + ++ Sbjct: 235 KGEVQLELIPSRLRGETATFEIK--AKGKVVVEEGRRITPRHIAQLEKAGVKKLDVPTEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A DI++ E+GEI EA I E+ LE++ S + ++P LY + +++ Y+ +TL Sbjct: 293 IYGRALATDIIDKESGEIIAEANAEITEEILEKMIESGVTEVPTLYTNDLDHGPYMSDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +A ++IYR+MRPG+ T AE++F LFF+ ++YDLS VGR+K N R+ Sbjct: 353 RIDSTRTPLEAKVEIYRMMRPGEPPTQDAAEALFENLFFNLERYDLSRVGRMKFNRRVGR 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + +DII +IK L+++RNG GT+DDID+LGNRR+R VGEM +NQ+R+GL+R+ Sbjct: 413 DEIEGEGTLSNQDIIDVIKTLIEIRNGSGTVDDIDHLGNRRIRCVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + +++MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 473 ERAVKERLSQAESENLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLACYARTNQYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DGK T DV YLSA++E IAQAN++LD++G+F+++LV R GE +L +++ Sbjct: 593 RRVADGKPTADVDYLSAIDEGKFVIAQANANLDKNGTFSDDLVPSRFQGEFMLATPDQVQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q+VS+AAS+IPFLE+DD+NR LMG NMQRQAVP L+AE P VGTGME VA Sbjct: 653 YMDVSPQQIVSVAASMIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERTVAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + AKR G+V+QVDA R+VIR E ++ + SGVDIY K+ RSNQNTC+NQRP+V Sbjct: 713 SGVVVAAKRGGVVDQVDASRVVIRVNEDEVGDNDSGVDIYNFTKYTRSNQNTCINQRPIV 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+LISE +V ED FTSI Sbjct: 773 KQGDIVARGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILISENVVQEDRFTSI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV PGDILVGK+TPKG Sbjct: 833 HIQELTCISRDTKLGPEEITADIPNVGESALSKLDESGIVYIGAEVKPGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRV + GTV+DV++F R G++K+ R+ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDTSLRVGTSTHGTVIDVQVFTRDGVEKDARAKEIENA 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ +D +DE IL +IY R ++ G GP FKK + ++ D + E SQ+ Sbjct: 953 EVASAKKDLNDEFRILADSIYQRARNLVMGCVGEKGPNKFKKGSKITVDYLDELEPSQYL 1012 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++ E+ Q+ +ESL + + +F+ + KI GDD+ PGV ++VKV++A+KR Sbjct: 1013 EIQLRVEEKQQALESLANYLAEQRKEYDKKFEVQKLKITQGDDLAPGVQKIVKVYLAVKR 1072 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1073 RIQPGDKMAGRHGNKGVISTIVPIEDMPYDENGEPVDIVLNPLGVPSRMNIGQILETHLG 1132 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE-KISDYDDDSVLRVAEQWK 1201 WA G+G KI L++ KA +R+FL KV +S+ DD V+ +A + Sbjct: 1133 WAAKGVGTKIGELLDTGKAP---KTVRTFLNKVYNHRDDKTVDLSEMTDDEVMTMAGNLR 1189 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP+ TPVFDGA EE I++M +A+L +SGQ+ LYDG TG+ F+RPVTVGY+YMLKLNH Sbjct: 1190 FGVPMGTPVFDGATEEDIHAMFDLAELPKSGQTWLYDGRTGDRFERPVTVGYMYMLKLNH 1249 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1250 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1309 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 V GRTR+Y++IV G+ E G PESFNVL KE+++L ++I+LE+ Sbjct: 1310 VNGRTRMYKNIVDGDHRMEPGMPESFNVLTKEIRSLAINIELEHED 1355 >gi|182676596|sp|A7MQQ9|RPOB_ENTS8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1342 Score = 1666 bits (4315), Expect = 0.0, Method: Composition-based stats. Identities = 712/1364 (52%), Positives = 967/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELIPERL-RGETASFDIE--ANGKIYVEKGRRITARHIRQLEKDEIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVAAKDYVDASTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTTDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQAN++L E+G F ++LV CR GE L +++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANTNLTEEGRFADDLVTCRSKGESSLFSADQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR GIV+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGIVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + + V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLNEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLIAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + DD VLR+AE + Sbjct: 1119 MAAKGIGDKINAMLKRQEEVAKLREFIQKAYDLGQDVRQKVDLNTFSDDEVLRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPLATPVFDGAKEAEIKELLQLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|396326|gb|AAC43085.1| DNA-directed RNA polymerase, beta-subunit [Escherichia coli str. K-12 substr. MG1655] Length = 1342 Score = 1666 bits (4315), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++V Y P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVXYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMXQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|223297|prf||0705170A polymerase beta,RNA Length = 1342 Score = 1666 bits (4314), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE+ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEEEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMVQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|156935814|ref|YP_001439730.1| DNA-directed RNA polymerase subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156534068|gb|ABU78894.1| hypothetical protein ESA_03690 [Cronobacter sakazakii ATCC BAA-894] Length = 1356 Score = 1666 bits (4314), Expect = 0.0, Method: Composition-based stats. Identities = 712/1364 (52%), Positives = 967/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 15 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 70 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 71 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 128 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 129 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 188 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 189 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDYTTEQILDLFFEKVVFEIRD 248 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 249 NKLQMELIPERL-RGETASFDIE--ANGKIYVEKGRRITARHIRQLEKDEIKHIEVPVEY 305 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 306 IAGKVAAKDYVDASTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 365 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 366 RVDPTTDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 425 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 426 DEIEGSGILSKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 485 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 486 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 545 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 546 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 605 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQAN++L E+G F ++LV CR GE L +++D Sbjct: 606 RKVTDGVVTDEIHYLSAIEEGNYVIAQANTNLTEEGRFADDLVTCRSKGESSLFSADQVD 665 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 666 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 725 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR GIV+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 726 SGVTAVAKRGGIVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 785 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + + V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 786 SLNEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 845 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 846 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 905 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 906 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 965 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 966 QLKQAKKDLSEELQILEAGLFSRIRAVLIAGGV-------------EAEKLDKLPRDRWL 1012 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1013 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1072 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1073 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1132 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + DD VLR+AE + Sbjct: 1133 MAAKGIGDKINAMLKRQEEVAKLREFIQKAYDLGQDVRQKVDLNTFSDDEVLRLAENLRK 1192 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1193 GMPLATPVFDGAKEAEIKELLQLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1252 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1253 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1312 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1313 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1356 >gi|88909139|sp|Q5FTX7|RPOB_GLUOX RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1390 Score = 1666 bits (4314), Expect = 0.0, Method: Composition-based stats. Identities = 806/1391 (57%), Positives = 1053/1391 (75%), Gaps = 31/1391 (2%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 A F G R+RK FG+ PEI +P+LI+VQ+ASY+ FL MN++PD R + GLQ F+S Sbjct: 3 AITKSFTGRKRIRKSFGRIPEIAPMPNLIDVQRASYEAFLQMNVSPDSRQDAGLQEVFRS 62 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI F+G L+F+SYEF+ PK+DV++C+ R LTYA PLK+ LRL +D+DE TG++S Sbjct: 63 VFPINDFAGRGRLDFMSYEFEDPKYDVEECIQRGLTYAAPLKVILRLTTWDIDEDTGSRS 122 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 I D+KEQ +YMGD+PLMT +GTF+I G +R++VSQ+HRSPG+ FDHDKG+ SGK L+A Sbjct: 123 IHDMKEQPVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFA 182 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMAL-------------------- 221 R+IP +G W+D EFD+KD+I+VRIDR+RK+PVT+ L AL Sbjct: 183 ARVIPYRGSWLDFEFDAKDLIYVRIDRKRKLPVTTLLYALEGANYLAQREQKIAEGGDVE 242 Query: 222 -----GMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIES 276 GMD +EILS FY + +++ G W P D G K+ S LVD DTGE V E+ Sbjct: 243 GLDIRGMDQDEILSYFYEAVPFTRLGGEWARPFDP-DAFRGLKLLSPLVDADTGEVVAEA 301 Query: 277 GKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEI 336 KLT+ +++ + EK + + + + G ++A D+VN TGEIY EAG+ + E L + Sbjct: 302 DAKLTARMVRKIAEK-TRVVQVGRLDILGRFLAYDLVNENTGEIYGEAGEELTEDRLAAL 360 Query: 337 FHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMF 396 I ++P+L VD ++ +IRNTL DKN R +AL+DIYR+MRPG+ T AE+MF Sbjct: 361 EEMGITELPLLSVDG-SHGPWIRNTLAADKNSCRDEALIDIYRIMRPGEPPTKETAEAMF 419 Query: 397 NFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 + LFFD +YDLS VGRVKMNMRL++D PD +R +RKEDI+ IKI+ +L++G+G IDDI Sbjct: 420 HGLFFDQGRYDLSAVGRVKMNMRLDVDAPDTLRVLRKEDILRTIKIMCELKDGRGQIDDI 479 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEF 516 DNLGNRRVRSVGE+++NQYR+GLLRMER+I+ER+ SVDID+VMP DLINAKP +AV EF Sbjct: 480 DNLGNRRVRSVGELMENQYRVGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREF 539 Query: 517 FCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSE 576 F SSQLSQ + N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET+ Sbjct: 540 FGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETAG 599 Query: 577 GHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDE 636 NIGL++SL+++A+VN YGFIETPYR V +G + + YLSAMEEE +AQA++ D+ Sbjct: 600 RPNIGLINSLSTYAKVNKYGFIETPYRLVEEGVLQDGWKYLSAMEEEKLVVAQADAKQDD 659 Query: 637 DGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNM 696 G T+ELV R +G+ +VP +++ D SPKQ+VS+AA+LIPFLENDD+NR LMG NM Sbjct: 660 QGRLTDELVSVRRSGDFRVVPPDQVTACDVSPKQLVSVAAALIPFLENDDANRALMGANM 719 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPST 756 QRQAVPL+KA+AP VGTGME+ VA SGA IVAKR G+++Q+D RIV+R+ + +T Sbjct: 720 QRQAVPLVKADAPLVGTGMEAAVAHDSGATIVAKRRGVIDQIDGARIVVRATDEAG--AT 777 Query: 757 SGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 GVDIYRL K+ RSNQ+TC+NQRPLVKVGD V DIIADGPST+LG+LALGRN+LVAFM Sbjct: 778 QGVDIYRLRKYMRSNQSTCINQRPLVKVGDTVHAGDIIADGPSTELGELALGRNVLVAFM 837 Query: 817 PWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNI 876 PW+GYNFEDS+LISER+ +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE L+N+ Sbjct: 838 PWNGYNFEDSILISERIARDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNL 897 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 DE GI+ VGAEVNPGDILVGK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSL++P G + Sbjct: 898 DEAGIVYVGAEVNPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGTT 957 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 GT+VDVR+F+R G+DK+ER++++ER +IE L +D+DDE+ I +R+ Y+RL E L GQ A Sbjct: 958 GTIVDVRVFSRRGVDKDERAMAIERAEIERLTKDRDDERGIQERSFYNRLRERLIGQTAG 1017 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 +G KG + T ++ +++ E+ R+ W V ++V +E L+ +++ + ++ RF +K Sbjct: 1018 AGFKGIRSGTPITEEVLDEHHRATWASITVTSDEVMAELEKLRGEFKEATRRIDARFDSK 1077 Query: 1057 IEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGT 1116 +EK+Q GD++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG+VSR++P EDMPFL++G Sbjct: 1078 VEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLENGQ 1137 Query: 1117 PVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDIS-PLRSFLEKV 1175 VDIVLNPLGVPSRMN+GQI ETHLGWAC +G I ++++Y+ G+ L L +V Sbjct: 1138 AVDIVLNPLGVPSRMNIGQILETHLGWACANIGASIGDMVDEYQRTGERKQELLDRLHEV 1197 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 G E ++ ++ ++ +A + G+P++TPVFDGA I ML A +++SGQS Sbjct: 1198 YGDVIFNEDVATLPNEQLIELANNLRKGLPIATPVFDGASIPDIEEMLEKAGVNKSGQSQ 1257 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 L DG TGEPF+R TVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1258 LIDGRTGEPFERQTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG 1317 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV D FE G PESFNVL+KE++ Sbjct: 1318 EMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVREQDDFEAGIPESFNVLIKELK 1377 Query: 1356 ALGLSIDLENS 1366 +LGL+++LE S Sbjct: 1378 SLGLNVELEQS 1388 >gi|222035698|emb|CAP78443.1| DNA-directed RNA polymerase beta chain [Escherichia coli LF82] Length = 1342 Score = 1665 bits (4313), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKEQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|85709549|ref|ZP_01040614.1| DNA-directed RNA polymerase beta subunit [Erythrobacter sp. NAP1] gi|85688259|gb|EAQ28263.1| DNA-directed RNA polymerase beta subunit [Erythrobacter sp. NAP1] Length = 1400 Score = 1665 bits (4312), Expect = 0.0, Method: Composition-based stats. Identities = 810/1379 (58%), Positives = 1049/1379 (76%), Gaps = 16/1379 (1%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 R+RK FG E++ +P+LIEVQ+ SY+ FL + GL+ +SVFPI Sbjct: 21 TAKKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSDKETGYVS--GLEKTLRSVFPIRD 78 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 F+G A L+FV YE + PK+D +C R +TYA P+K+TLRLIVF+VD+ T +S+ DIKE Sbjct: 79 FAGTAELDFVHYELEEPKYDTTECRQRGITYAAPMKVTLRLIVFEVDQETETRSVLDIKE 138 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +YMGD+PLMT++GTF+I G +R++VSQ+HRSPG+ FDHD+G+ SGKLL+A R+IP Sbjct: 139 QDVYMGDMPLMTENGTFIINGTERVIVSQMHRSPGVLFDHDRGKTHSSGKLLFAARVIPY 198 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+D E+D+KDI++VRIDR+RK+PVT+ L ALG+DSE IL FY + + + D W Sbjct: 199 RGSWLDFEYDAKDIVNVRIDRKRKLPVTALLYALGLDSEAILHHFYDTVTWERAKDGWKI 258 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 P A + G K + LVD TGE++ + +K++ + G+ L + ++ + Y Sbjct: 259 PFVAEN-WRGQKPTFPLVDASTGEEIFAANQKISPRAANKAAKDGLTELLLPTEEVVSRY 317 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 A D+++ TG IYIEAGD I + +E ++ I + +L +D +N +IRNTL DK Sbjct: 318 AANDMIDETTGRIYIEAGDEITLEHVETFDNAGIDSLELLDIDEINTGPWIRNTLKVDKA 377 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 ++R + L IY+VMRPG+ T AE++F LFFD ++YDLS VGRVK+NMRL LD D Sbjct: 378 ENRDEGLEAIYKVMRPGEPPTKETAEALFEGLFFDGERYDLSAVGRVKLNMRLGLDAEDT 437 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 V +RKEDI+A++K LV L++GKG +DDIDNLGNRRVRSVGE+L+NQYR+GLLRMER++K Sbjct: 438 VTTLRKEDILAVVKELVGLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVK 497 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+SSVD+ +VMP DLINAKP V+AV EFF SSQLSQ + N LS +TH RR+SALG G Sbjct: 498 ERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPG 557 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL SF+RVN YGFIETPYRKV D Sbjct: 558 GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGFIETPYRKVED 617 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 KVT DV+YLSAMEE+ +AQA++ L++DGSF E+L+ R +G+ ++ P ++I +D S Sbjct: 618 NKVTGDVIYLSAMEEQKHTVAQASAELNDDGSFVEDLISARQSGDNLMAPNDQITLMDVS 677 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPL+KAEAP+VGTGME VA+ SGAAI Sbjct: 678 PKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPWVGTGMEETVARDSGAAI 737 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 AKR GIV+QVDA RIVIR+ +GD++P SGVDIY L KFQRSNQNTC+NQRPLVKVG+ Sbjct: 738 AAKRGGIVDQVDATRIVIRA-QGDVEPGQSGVDIYTLQKFQRSNQNTCINQRPLVKVGEV 796 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + DIIADGPSTDLG+LALG+N LVAFMPW+GYN+EDS+LISER+V +DVFTSIHIEEF Sbjct: 797 IEPGDIIADGPSTDLGELALGKNSLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIEEF 856 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EVMARDTKLGPE+ITRDIPNV EE L+N+DE GI+ +GAEV+PGDILVGKITPKGESPMT Sbjct: 857 EVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILVGKITPKGESPMT 916 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DVRDTSLR+P GV+GT+V+VR+FNRHGI+ ++R+ +++ E+IE L Sbjct: 917 PEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGIEIDDRTRAIQNEEIERL 976 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 +D DE+ IL+R Y+RL ++L GQ A + PKG KK +S ++ + R +W++FAV Sbjct: 977 RKDAADERNILNRATYNRLRDMLLGQTASAAPKGVKKGIEISEQVLQDVERHEWFKFAVA 1036 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D+ Q +E++K QY+ S ++++ +F+++ EK++ GD++ PGVL++VKVFVA+KR +Q G Sbjct: 1037 DDGRQAQLEAIKSQYDDSAAMIDAKFEDRKEKLERGDELAPGVLKMVKVFVAVKRKLQPG 1096 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRILP EDMPFL+DGTPVD+VLNPLGVPSRMNVGQIFETHLG+A G Sbjct: 1097 DKMAGRHGNKGVISRILPIEDMPFLEDGTPVDLVLNPLGVPSRMNVGQIFETHLGFAARG 1156 Query: 1148 LGKKIKSLI-----------NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 LG I + DY + + L+ V G + E + ++ + Sbjct: 1157 LGMDIADKLEEWHAANPNAKEDYASAKPPEAVVERLKDVYG-EQYFEDLESRSTAGIVEL 1215 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A+ +GVP+ TPVFDGA E + L A +D SGQS L+DG TGE FDR VTVG IYM Sbjct: 1216 AQNLSAGVPMGTPVFDGAREADVTDYLVKAGVDGSGQSTLFDGRTGEAFDRKVTVGIIYM 1275 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEMLT Sbjct: 1276 LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLT 1335 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 +KSDDVVGRT+VYE+IV G+DTFE G PESFNVLVKEM++LG++++L++ + E Sbjct: 1336 VKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGMNVELKSLSDGEEDEDE 1394 >gi|146309864|ref|YP_001174938.1| DNA-directed RNA polymerase subunit beta [Enterobacter sp. 638] gi|166991525|sp|A4W5A7|RPOB_ENT38 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|145316740|gb|ABP58887.1| DNA-directed RNA polymerase subunit beta [Enterobacter sp. 638] Length = 1342 Score = 1665 bits (4312), Expect = 0.0, Method: Composition-based stats. Identities = 711/1364 (52%), Positives = 967/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL+V++ + G ++ Sbjct: 57 FPIKSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVVYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELLPERL-RGETASFDIEF--DGKVYVEKGRRITARHIRQLEKDDIKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A + L ++ S + I L+ + +++ AY+ T+ Sbjct: 292 IAGKVAAKDYVDASTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETI 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DAIEGSGILSKEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQAN++LDE+G F ++LV CR GE L +++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANTNLDEEGRFVDDLVTCRSKGESSLFSNDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIYAVLVSGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKQQEEVAKLREFIQRAYDLGTDVRQKVDLNTFSDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|110807837|ref|YP_691357.1| DNA-directed RNA polymerase subunit beta [Shigella flexneri 5 str. 8401] gi|123342223|sp|Q0SY13|RPOB_SHIF8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|110617385|gb|ABF06052.1| RNA polymerase, beta subunit [Shigella flexneri 5 str. 8401] Length = 1342 Score = 1665 bits (4311), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VK ++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKGYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|260596086|ref|YP_003208657.1| DNA-directed RNA polymerase subunit beta [Cronobacter turicensis z3032] gi|260215263|emb|CBA27171.1| DNA-directed RNA polymerase subunit beta [Cronobacter turicensis z3032] Length = 1356 Score = 1665 bits (4311), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 966/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 15 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 70 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 71 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 128 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 129 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 188 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 189 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDYTTEQILDLFFEKVVFEIRD 248 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 249 NKLQMELIPERL-RGETASFDIE--ANGKIYVEKGRRITARHIRQLEKDEIKLIEVPVEY 305 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A + L ++ S + I L+ + +++ Y+ T+ Sbjct: 306 IAGKVAAKDYVDASTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYMSETV 365 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 366 RVDPTTDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 425 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 426 DEIEGSGILSKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 485 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 486 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 545 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 546 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 605 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQAN++L E+G F ++LV CR GE L +++D Sbjct: 606 RKVTDGVVTDEIHYLSAIEEGNYVIAQANTNLTEEGRFADDLVTCRSKGESSLFSADQVD 665 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 666 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 725 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 726 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 785 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + + V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 786 SLNEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 845 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 846 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 905 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 906 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 965 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 966 QLKQAKKDLSEELQILEAGLFSRIRAVLIAGGV-------------EAEKLDKLPRDRWL 1012 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1013 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1072 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1073 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1132 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE + Sbjct: 1133 MAAKGIGDKINAMLKRQEEVAKLREFIQKAYDLGQDVRQKVDLNTFSDEEVLRLAENLRK 1192 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1193 GMPLATPVFDGAKEAEIKELLQLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1252 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1253 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1312 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1313 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1356 >gi|254427266|ref|ZP_05040973.1| DNA-directed RNA polymerase, beta subunit [Alcanivorax sp. DG881] gi|196193435|gb|EDX88394.1| DNA-directed RNA polymerase, beta subunit [Alcanivorax sp. DG881] Length = 1380 Score = 1665 bits (4311), Expect = 0.0, Method: Composition-based stats. Identities = 720/1387 (51%), Positives = 972/1387 (70%), Gaps = 30/1387 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK P+++++P L+ +Q SY FL + + +ER EGL+AAF+SV Sbjct: 1 MAYSFTEKKRIRKDFGKLPKVMEVPYLLAIQLDSYRKFLQQDKSAEERLEEGLEAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+ YEF P FDV +C+ R TYA PL++ +RL+++D + I Sbjct: 61 FPIASYSGNAALEYAGYEFGKPVFDVKECIIRGTTYAAPLRVRIRLVIYDRESSGA---I 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 118 KDIREQQVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG S+E+L F+ + Sbjct: 178 RVIPYRGSWLDFEFDPKDQVFVRIDRRRKLPATILLRALGYTSDEVLEMFFDTNEIAVED 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + ++ GE V+E G+++T+ ++ L++ +++L I ++ Sbjct: 238 GIYRMKLVPERL-RGETATFDIL--ADGEVVVERGRRITARHIRQLEKANIEYLEIPAEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G Y+A+ I++ +TGEI +E + ++LE++ I D LY + ++N ++ +TL Sbjct: 295 LQGKYLAKSIIDQDTGEILVECNTELTAETLEKLEQGGIADFETLYTNDLDNGPFMADTL 354 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL Sbjct: 355 RADPTRTPLEALVEIYRMMRPGEPPTKEAAENLFKNLFFTDERYDLSGVGRMKFNRRLGR 414 Query: 423 DTPDDVRHI-----------------------RKEDIIAIIKILVDLRNGKGTIDDIDNL 459 + + DII +++ LVD+RNG G +DDID+L Sbjct: 415 EDETGPGILYDGRYFSARSDEEGKQYFEQMGGETSDIIEVLRTLVDIRNGNGVVDDIDHL 474 Query: 460 GNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 GNRRVRSVGEM +NQ+R+GL+R+ER++KER+S + + +MPQDLIN+KPV +AV EFF S Sbjct: 475 GNRRVRSVGEMAENQFRVGLVRVERAVKERLSLAESEGLMPQDLINSKPVAAAVKEFFGS 534 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 SQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG N Sbjct: 535 SQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 594 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 IGL++SL ++AR N YGF+E+PY KV DGKV+ ++ YLSA+EE IAQ ++ + EDG Sbjct: 595 IGLINSLATYARANEYGFLESPYLKVIDGKVSEEIEYLSAIEEAECVIAQVDAKMTEDGG 654 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQ 699 F E+ V R E ++ R+ I +D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQ Sbjct: 655 FEEDFVTVRHRYEFTVMERDTITHMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQ 714 Query: 700 AVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGV 759 AVP L+A+ P VGTG E VA+ SG +VA R GIV++VDA RI+++ + ++ +GV Sbjct: 715 AVPTLRADKPLVGTGFERHVARDSGVCVVATRGGIVDKVDASRIIVKVNDSEVSEGEAGV 774 Query: 760 DIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWH 819 DIY L K+ RSNQNTC+NQRPLVKVGD V DI+ADGPS D+G+LALG+NM VAFMPW+ Sbjct: 775 DIYNLTKYTRSNQNTCINQRPLVKVGDRVAARDIMADGPSVDMGELALGQNMRVAFMPWN 834 Query: 820 GYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDEC 879 GYNFEDS+LISE++V +D FTSIHI+E +ARDTKLGPEEIT DIPNV E L +DE Sbjct: 835 GYNFEDSILISEKVVKDDRFTSIHIQELTCIARDTKLGPEEITADIPNVGEAALSKLDES 894 Query: 880 GIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTV 939 GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTS RV SGV GT+ Sbjct: 895 GIVYIGAEVEAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSQRVSSGVKGTI 954 Query: 940 VDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGP 999 +DV++F R G++K+ER+ +E+ +E +D DE IL+++I RL ++ G+ G Sbjct: 955 IDVQVFTRDGVEKDERARQIEQAALEQFRKDLKDEYRILEQDILERLRTVMVGKKVNGG- 1013 Query: 1000 KGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 GFK+ L+ D++ +W++ D+ V +E + E K ++R+K+K K Sbjct: 1014 AGFKRGAELTGDVLDGLDAEKWFELRPADDDVAEQLERAQQYLEQHKKEQDERYKDKQAK 1073 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 I GDD+ GVL+VVKV++A+KR IQ GDKMAGRHGNKG++S I+P EDMP ++G PVD Sbjct: 1074 ISGGDDLAHGVLKVVKVYLAIKRRIQPGDKMAGRHGNKGVISVIMPEEDMPHDENGVPVD 1133 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 +VLNPLGVPSRMNVGQI ETHLGWA GLG++I ++ + K DI + G G Sbjct: 1134 VVLNPLGVPSRMNVGQILETHLGWAAKGLGERIGEMLAEQKKIADIRVFLDKIYNQAGAG 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDG 1239 E + + DD ++ +A+ GVP++T VFDGA E I +L +A D SGQ L+DG Sbjct: 1194 GTPEDLDSFSDDEIIDLAKNLVGGVPMATAVFDGAKEFEIKELLELAGHDRSGQVQLWDG 1253 Query: 1240 LTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEV 1299 TGE FDR VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEV Sbjct: 1254 RTGEAFDRKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1313 Query: 1300 WCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGL 1359 W ++AYGAAY LQEMLT+KSDDV GRTRVY++IV G+ + G PESFNVL+KE+++LG+ Sbjct: 1314 WALEAYGAAYTLQEMLTVKSDDVNGRTRVYKNIVDGDHRMDPGMPESFNVLLKEIRSLGI 1373 Query: 1360 SIDLENS 1366 +I+LEN Sbjct: 1374 NIELEND 1380 >gi|271498792|ref|YP_003331817.1| DNA-directed RNA polymerase subunit beta [Dickeya dadantii Ech586] gi|270342347|gb|ACZ75112.1| DNA-directed RNA polymerase, beta subunit [Dickeya dadantii Ech586] Length = 1342 Score = 1665 bits (4311), Expect = 0.0, Method: Composition-based stats. Identities = 711/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+++SG++ L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPISSYSGSSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +EEIL F+ K+VY Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYSTEEILDLFFDKVVYEIHN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ G++ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ADGKVYVEKGRRITARHIRQLEKDGIERIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A+D V+ TGE+ A + L ++ S + I L+ + +++ Y+ TL Sbjct: 292 IAGKVLAKDYVDESTGEVIAMANMELSLDLLAKLSQSGHKRIDTLFTNDLDHGPYMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQAN++LD++G F +ELV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFIDELVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEEEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ ++L +D + + PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHDVLVAGGV-------------EADKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE K Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGNDVRQKVDLNTFSDEEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKENEIKELLKLGDLPTSGQITLFDGRTGEQFERSVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|38049094|gb|AAR10354.1| RNA polymerase B subunit [Candidatus Legionella jeonii] Length = 1368 Score = 1664 bits (4309), Expect = 0.0, Method: Composition-based stats. Identities = 725/1366 (53%), Positives = 986/1366 (72%), Gaps = 6/1366 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 R RK FG+ + + IP+L+E+Q SY FL + +E+ N GL AAF S Sbjct: 8 THQYSHAEKKRFRKSFGRQADKMAIPNLLEIQLKSYRDFLQTDSKFNEQQNTGLHAAFSS 67 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 VFPI +FSG A LE+VSY+ P FDV +C R LTY+ PL++ +RL+V D + K Sbjct: 68 VFPIESFSGNARLEYVSYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVLDKEAAGEPKP 127 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 IKDI+EQ ++MG++PLMT GTFVI G +R+VVSQLHRSPG+ F+HDKG+ SGKLLY+ Sbjct: 128 IKDIREQDVFMGEIPLMTDVGTFVINGTERVVVSQLHRSPGVIFEHDKGKTHSSGKLLYS 187 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KD + VRIDRRRK+PV+ L +LG + E+IL+ F+ R Sbjct: 188 ARIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPVSILLRSLGYEIEDILAEFFESTTCQLR 247 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 + + + G S + +TGE ++E G+++T+ +K +++ ++ L + D Sbjct: 248 NGEFINLI--PSRLRGEMASFDIAIPETGELIVEQGRRITARHIKQMEKSNMQDLVVPRD 305 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G +A+ VN ETGEI A D ++ + L+++ + I +Y + +++ +YI +T Sbjct: 306 YLIGKILAKHAVNTETGEILAHANDEVNAELLDQLAQNGILSFETIYTNDLDHGSYISDT 365 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D + +AL++IYR+MRPG+ T AE +F LFF D+YDLS VGR+K N R+ Sbjct: 366 LKIDPTASQLEALVEIYRMMRPGEPPTKEAAEGLFKNLFFAEDRYDLSAVGRMKFNRRVG 425 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 ++KEDI+A+IK L+D+RNG G +DDID+LGNRRVRSVGEM +NQ+R+GL+R Sbjct: 426 RKEDTGPGTLKKEDILAVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMAENQFRVGLVR 485 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+S V+ +++MPQDLINAKPV +AV EFF SSQLSQ + VN LS +TH RR+ Sbjct: 486 VERAVKERLSLVESENLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQVNPLSGVTHKRRV 545 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGFIETP Sbjct: 546 SALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNNYGFIETP 605 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 RKV DG+VT+++ YLSA+EE ++YIAQ++ ++D DG +LV CR E L +KI Sbjct: 606 CRKVIDGRVTDEIEYLSAIEEVDQYIAQSSVAVDADGKILADLVPCRHQNEFSLTTPDKI 665 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +++D SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME VA Sbjct: 666 NYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERTVAS 725 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG ++VAKR GI++ VDA RIV+R + + +GVDIY L K+ RSNQ+TC+NQRP+ Sbjct: 726 DSGVSVVAKRGGIIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCINQRPI 785 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V GD ++R D++ADGP TD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V ED FT+ Sbjct: 786 VSTGDRIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVQEDRFTT 845 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE +ARDTKLG EEIT DIPNV E L N+DE G++ +GAEVN GDILVGK+TPK Sbjct: 846 IHIEELTCIARDTKLGTEEITSDIPNVGESALANLDESGVVYIGAEVNAGDILVGKVTPK 905 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG++GTV+DV++F R G++K++R+ S+E Sbjct: 906 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDQRAKSIEE 965 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E + + +D DE+ I + +IY R+ +L ++A GP K T ++ + + R +W Sbjct: 966 EHLARVRKDLIDERRIREEDIYHRVHTLLLNKSATGGPASIKPGTQITEAYLEKIDRDKW 1025 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + V D+ + + +E L Q E +E RF + +KI GDD+ PGVL++VKV++A+K Sbjct: 1026 FDIRVDDDVISQQLEQLSKQLELLGKEMEKRFNDSRKKIIQGDDLAPGVLKIVKVYLAVK 1085 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S ++P EDMP ++DGT VDIVLNPLGVPSRMN+GQ+ ETHL Sbjct: 1086 RRIQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQVLETHL 1145 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQW 1200 G A GLG++I +L++ IS +R +L K+ G ++ DD +L +A+ Sbjct: 1146 GLAAKGLGQRIANLLDRKSP---ISEVRDYLNKIYNHDGMERVRLDSLDDSELLLLADNL 1202 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++GVP++TPVFDGA E I +ML +A L G++ L DG TG FD PVTVGY+YMLKLN Sbjct: 1203 RAGVPMATPVFDGASEAEIKAMLELAGLRSDGKTTLIDGRTGNQFDNPVTVGYMYMLKLN 1262 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1263 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1322 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G+ + G PESFNVL+KE++ALG+ I+L++ Sbjct: 1323 DVGGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELDHD 1368 >gi|300714847|ref|YP_003739650.1| DNA-directed RNA polymerase beta chain [Erwinia billingiae Eb661] gi|299060683|emb|CAX57790.1| DNA-directed RNA polymerase beta chain [Erwinia billingiae Eb661] Length = 1342 Score = 1664 bits (4309), Expect = 0.0, Method: Composition-based stats. Identities = 708/1364 (51%), Positives = 969/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ KIVY R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKIVYEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G +E G+++T+ ++ L++ G++ + + + Sbjct: 235 NKLQMELVPERL-RGDTASFDIES--NGTIYVEKGRRITARHIRQLEKDGIEHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D V+ TGE+ + A + L ++ S + I L+ + +++ AYI T+ Sbjct: 292 IAGKVVAKDYVDESTGELIVAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII +++ L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIQVMRKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT+++ YLSA+EE N IAQAN++LD++G F ++LV CR GE L R+++D Sbjct: 592 RRVREGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFVDDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRISYLLVAGGV-------------EAEKLEKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVSKLREFIQRAYDLGSDLRQKVDLNTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLQLGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|307128979|ref|YP_003880995.1| RNA polymerase, subunit beta [Dickeya dadantii 3937] gi|306526508|gb|ADM96438.1| RNA polymerase, beta subunit [Dickeya dadantii 3937] Length = 1342 Score = 1664 bits (4308), Expect = 0.0, Method: Composition-based stats. Identities = 710/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPISSYSGNSELQYVSYRLGEPVFDVQECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +EEIL F+ K+VY Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSYSTEEILDLFFDKVVYEIHN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ G++ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ADGKVYVEKGRRITARHIRQLEKDGIERIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A+D V+ TGE+ A + L ++ + + + L+ + +++ Y+ TL Sbjct: 292 IAGKVLAKDYVDESTGEVIAMANMELSLDLLAKLSQAGHKRLDTLFTNDLDHGPYMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQAN++LD++G F EELV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFIEELVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L +D + + PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHYVLVAGGV-------------EADKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE K Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGNDVRQKVDLNTFSDEEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKENEIKELLKLGDLPTSGQIRLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|323174504|gb|EFZ60129.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli LT-68] Length = 1372 Score = 1664 bits (4308), Expect = 0.0, Method: Composition-based stats. Identities = 717/1364 (52%), Positives = 974/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G++ R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 31 YGLLLYREKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 86 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 87 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 144 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 145 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 204 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 205 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 264 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 265 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 321 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ YI TL Sbjct: 322 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 381 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 382 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 441 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 442 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 501 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 502 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 561 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 562 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 621 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 622 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 681 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 682 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 741 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 742 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 801 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 802 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 861 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 862 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 921 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 922 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 981 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 982 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWL 1028 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1029 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1088 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1089 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1148 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE + Sbjct: 1149 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1208 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1209 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1268 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1269 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1328 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1329 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1372 >gi|282599827|ref|ZP_05972033.2| DNA-directed RNA polymerase, beta subunit [Providencia rustigianii DSM 4541] gi|282567662|gb|EFB73197.1| DNA-directed RNA polymerase, beta subunit [Providencia rustigianii DSM 4541] Length = 1350 Score = 1664 bits (4308), Expect = 0.0, Method: Composition-based stats. Identities = 711/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 9 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PNGQNGLEAAFRSV 64 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L++VSY P FDV +C R +TY+ PL++ LRLIV++ + G ++ Sbjct: 65 FPIQSYSGNAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLIVYEREAPEG--TV 122 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 123 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 182 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L A+ ++EEIL+ F+ K V+ R Sbjct: 183 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMDYNTEEILNLFFDKTVFQIRD 242 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L+++ V + + + Sbjct: 243 NKLMMTLVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKEEVNSIEVPVEY 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA D ++ TGE+ A + L + S + I L+ + +++ AYI T+ Sbjct: 300 IAGKVVARDYIDESTGELICAANMELSLDMLARLSQSGHKTIETLFTNDLDHGAYISETV 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N LN Sbjct: 360 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLNR 419 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + KEDII ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 420 EEIEGSGILSKEDIIEVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 479 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 480 ERAVKERLSLGDLDALMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 539 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 599 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ YLSA+EE N IAQAN+ L +DG F EEL+ CR GE L RE+++ Sbjct: 600 RLVRDGIVTDEIHYLSAIEEGNFIIAQANTVLSDDGRFIEELITCRNKGESSLFSREQVE 659 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 660 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 719 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VA+R G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 720 SGVTAVARRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 779 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 780 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 839 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 840 HIQELSCVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 899 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLR+P+GVSGTV+DV++F R G++K++R++ +E Sbjct: 900 ETQLTPEEKLLRAIFGEKASDVKDSSLRIPNGVSGTVIDVQVFTRDGVEKDKRALEIEET 959 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + ++SR+ +L + ++ + + PR +W Sbjct: 960 QLRDAKKDLTEELRIFESALFSRIRSVLISGG-------------IEAEKLDKLPRDRWL 1006 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++ DE+ Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1007 ELSLADEEKQNQLEQLAEQYDELKSDFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1066 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1067 QIQPGDKMAGRHGNKGVISKINPVEDMPYDENGNPVDIVLNPLGVPSRMNIGQILETHLG 1126 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + +S + D+ V+R+AE K Sbjct: 1127 MAAKGIGEKINAMLKQQQEVAKLREFIQKAYDLGDDPRQKVDLSTFSDEEVMRLAENLKK 1186 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++A L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1187 GMPIATPVFDGAKEKEIKELLKLAGLPTSGQITLFDGRTGEKFERQVTVGYMYMLKLNHL 1246 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1247 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1306 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1307 NGRTKMYKNIVDGSHQMEPGMPESFNVLLKEIRSLGINIELEDE 1350 >gi|110833239|ref|YP_692098.1| DNA-directed RNA polymerase subunit beta [Alcanivorax borkumensis SK2] gi|123050736|sp|Q0VSM2|RPOB_ALCBS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|110646350|emb|CAL15826.1| DNA-directed RNA polymerase, beta subunit [Alcanivorax borkumensis SK2] Length = 1380 Score = 1664 bits (4308), Expect = 0.0, Method: Composition-based stats. Identities = 716/1387 (51%), Positives = 971/1387 (70%), Gaps = 30/1387 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK P+++++P L+ +Q SY FL + + +ER EGL+AAF+SV Sbjct: 1 MAYSFTEKKRIRKDFGKLPKVMEVPYLLAIQLDSYRKFLQQDKSAEERLEEGLEAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+ YEF P FDV +C+ R TYA PL++ +RL+++D + I Sbjct: 61 FPIASYSGNAALEYAGYEFGKPVFDVKECIIRGTTYAAPLRVRIRLVIYDRESSGA---I 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 118 KDIREQQVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG S+E+L F+ + Sbjct: 178 RVIPYRGSWLDFEFDPKDQVFVRIDRRRKLPATILLRALGYTSDEVLEMFFDTNEIAVED 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + ++ GE V+E G+++T+ ++ L++ +++L I ++ Sbjct: 238 GIYRMKLVPERL-RGETATFDIL--ADGEVVVERGRRITARHIRQLEKANIEYLDIPAEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G Y+A+ I++ +TGEI +E + ++LE++ I D LY + ++N ++ +TL Sbjct: 295 LQGKYLAKSIIDQDTGEILVECNTELTAETLEKLEQGGITDFETLYTNDLDNGPFMADTL 354 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N RL Sbjct: 355 RADPTRTPLEALVEIYRMMRPGEPPTKEAAENLFKNLFFTDERYDLSTVGRMKFNRRLGR 414 Query: 423 DTPDDVRHIRKEDIIA-----------------------IIKILVDLRNGKGTIDDIDNL 459 + + + +++ LVD+RNG G +DDID+L Sbjct: 415 EDETGPGILYDGRYFSARSDEEGKQYFEQMGGETSDIIDVLRTLVDIRNGNGVVDDIDHL 474 Query: 460 GNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 GNRRVRSVGEM +NQ+R+GL+R+ER++KER+S + + +MPQDLIN+KPV +AV EFF S Sbjct: 475 GNRRVRSVGEMAENQFRVGLVRVERAVKERLSLAESEGLMPQDLINSKPVAAAVKEFFGS 534 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 SQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG N Sbjct: 535 SQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 594 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 IGL++SL ++AR N YGF+E+PY KV DGKV+ ++ YLSA+EE IAQ ++ + E+G Sbjct: 595 IGLINSLATYARANEYGFLESPYLKVIDGKVSEEIEYLSAIEEAECVIAQVDAKMTEEGG 654 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQ 699 F E+ V R E ++ R+ I +D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQ Sbjct: 655 FEEDFVTVRHRYEFTVMERDTITHMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQ 714 Query: 700 AVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGV 759 AVP L+A+ P VGTG E VA+ SG +VA R GIV++VDA RI+++ + ++ +GV Sbjct: 715 AVPTLRADKPLVGTGFERHVARDSGVCVVATRGGIVDKVDASRIIVKVNDDEVSEGEAGV 774 Query: 760 DIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWH 819 DIY L K+ RSNQNTC+NQRPLVKVGD V DI+ADGPS D+G+LALG+NM VAFMPW+ Sbjct: 775 DIYNLTKYTRSNQNTCINQRPLVKVGDRVAARDIMADGPSVDMGELALGQNMRVAFMPWN 834 Query: 820 GYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDEC 879 GYNFEDS+LISE++V +D FTSIHI+E +ARDTKLGPEEIT DIPNV E L +DE Sbjct: 835 GYNFEDSILISEKVVKDDRFTSIHIQELTCIARDTKLGPEEITADIPNVGEAALSKLDES 894 Query: 880 GIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTV 939 GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTS RV SGV GT+ Sbjct: 895 GIVYIGAEVEAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSQRVSSGVKGTI 954 Query: 940 VDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGP 999 +DV++F R G++K+ER+ +E+ +E +D DE IL+ +I RL ++ G+ G Sbjct: 955 IDVQVFTRDGVEKDERARQIEQAALEQFRKDLKDEYRILELDILERLRAVMVGKKVNGG- 1013 Query: 1000 KGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 GFK+ T ++ +++ +W++ D+ V +E + E K ++R+K+K K Sbjct: 1014 AGFKRGTEMTGEILDGLDAEKWFELRPADDDVAEQLERAQQYLEQHKKEQDERYKDKQAK 1073 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 I GDD+ GVL+VVKV++A+KR IQ GDKMAGRHGNKG++S I+P EDMP ++G PVD Sbjct: 1074 ISGGDDLAHGVLKVVKVYLAIKRRIQPGDKMAGRHGNKGVISVIMPEEDMPHDENGVPVD 1133 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 +VLNPLGVPSRMNVGQI ETHLGWA GLG++I ++ + K DI + G G Sbjct: 1134 VVLNPLGVPSRMNVGQILETHLGWAAKGLGERIGEMLAEQKKIADIRVFLDKIYNQAGAG 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDG 1239 E + + DD ++ +A+ GVP++T VFDGA E I +L +A D SGQ L+DG Sbjct: 1194 GTPEDLDSFSDDEIIELAKNLVGGVPMATAVFDGAKEFEIKELLELAGHDRSGQVQLWDG 1253 Query: 1240 LTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEV 1299 TGE FDR VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEV Sbjct: 1254 RTGEAFDRKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1313 Query: 1300 WCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGL 1359 W ++AYGAAY LQEMLT+KSDDV GRTRVY++IV G+ + G PESFNVL+KE+++LG+ Sbjct: 1314 WALEAYGAAYTLQEMLTVKSDDVNGRTRVYKNIVDGDHRMDPGMPESFNVLLKEIRSLGI 1373 Query: 1360 SIDLENS 1366 +I+LEN Sbjct: 1374 NIELEND 1380 >gi|88799211|ref|ZP_01114790.1| DNA-directed RNA polymerase, beta subunit [Reinekea sp. MED297] gi|88777970|gb|EAR09166.1| DNA-directed RNA polymerase, beta subunit [Reinekea sp. MED297] Length = 1360 Score = 1663 bits (4307), Expect = 0.0, Method: Composition-based stats. Identities = 712/1365 (52%), Positives = 974/1365 (71%), Gaps = 5/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK ++D+P L+ +Q SY FL + +R + GL AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFGKLEPVMDVPYLLAIQLDSYRSFLQADADAADRQDSGLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+VSY P FDV +C R +TYA PL++ +RLI++D D + K+I Sbjct: 61 FPIVSYSGNAALEYVSYNLGKPAFDVKECQLRGVTYAAPLRVKVRLIIYDKDSPS--KAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTF++ G +R+VVSQLHRSPG+ +DHDKG+ SGKLL++ Sbjct: 119 KDIKEQEVYMGEIPLMTDNGTFIVNGTERVVVSQLHRSPGVFYDHDKGKTHSSGKLLHSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L AL ++EIL F+ ++ + G Sbjct: 179 RVIPYRGSWLDFEFDPKDQVFVRIDRRRKLPATILLRALEYTNQEILDMFFERVSFKVNG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L A D + G + + D + G ++E G+++T+ +K + G+ + + Sbjct: 239 AEIEMDLVA-DRLKGETAAFEIRDGE-GNVLLEEGRRITARHIKQFESAGLTSVVVPDTY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A D+VN TGEI + D I LE+I + I LY + ++ ++ +TL Sbjct: 297 VLGKSLATDLVNASTGEILAQCNDEITVDLLEQIKENGIAAFETLYTNDLDCGPFVSDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +AL++IYR+MRPG+ T AE++F LFF SD+YDLS+VGR+K N RL Sbjct: 357 RNDPTSTPLEALVEIYRMMRPGEPPTKEAAETLFQNLFFTSDRYDLSSVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D+ + + +EDI+ +++ L+D+RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 417 DSDEGEGILSREDIVDVLRTLIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S + + +MPQDL+NAKPV +A+ EFF SSQLSQ + N LS IT+ RR+S Sbjct: 477 ERAVRERLSMAESEGLMPQDLVNAKPVAAAIKEFFGSSQLSQFMDQNNPLSGITNKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL+++L+++AR N+YGF+ETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINTLSTYARTNSYGFLETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +GKVT+D+VYLSA++E IAQAN + +DG +E V R E L P +K+D Sbjct: 597 RRVENGKVTDDIVYLSAIDEAKHTIAQANVPVSDDGMIEDEFVQVRHQNEFTLAPIDKVD 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP LK++ P VGTG+E VA Sbjct: 657 MMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKSDKPLVGTGIERNVAVD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA R G+VE VDA RIV++ ++ +GVDIY L K+ RSNQNTC+NQR +V Sbjct: 717 SGVCVVADRGGVVEYVDASRIVVKVAHDEIGDDDAGVDIYNLTKYTRSNQNTCINQRTIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD + R D++ADGPS DLG+LALG+NM +AFMPW+GYNFEDS+L+SE++V ED FTSI Sbjct: 777 RQGDMIARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILVSEKVVQEDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 837 HIQELTCIARDTKLGPEEITADIPNVGESALSKLDESGIVYIGAEVGAGDILVGKVTPKS 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRV G+ GTV+DV+ F R G+++++RS +ER+ Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVKGGMRGTVIDVQTFTRDGVERDQRSKDIERQ 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +E +D + E I++ ++ RL L GQ GP KK L++D ++ PRS W+ Sbjct: 957 ALEEFRKDLNAEYRIVEDTVFERLHNALVGQKVAGGP-DLKKGDELTADYLNGLPRSDWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +QDE + +E+ + Q + K ++RF +K K+Q GDD+ PGVL+VVKV++A+KR Sbjct: 1016 KLRLQDETLAAQLEAAEAQLKERKQDQDERFDDKKRKLQSGDDLQPGVLKVVKVYLAVKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ + G PVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVISVIMPVEDMPYDEKGNPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A GLG +I ++ + ++ ++ + G +E ++++ D + +A K Sbjct: 1136 AAAKGLGDRINEMVEEQRSAAELRDFMDQVYNQSGDSKRSEALAEFSDAEIQELASNLKK 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E + +LR+A +D+SGQ L+DG TG+ F+ TVGY+YMLKLNH+ Sbjct: 1196 GVPIATPVFDGAKETEVKELLRLAGMDDSGQIQLWDGRTGDAFENKTTVGYMYMLKLNHL 1255 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1256 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 GRT++Y++IV G+ E G PESFNVLVKE+++LG+ I+LEN Sbjct: 1316 NGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELENEE 1360 >gi|197286614|ref|YP_002152486.1| DNA-directed RNA polymerase subunit beta [Proteus mirabilis HI4320] gi|227355193|ref|ZP_03839602.1| DNA-directed RNA polymerase, beta-subunit [Proteus mirabilis ATCC 29906] gi|226699431|sp|B4EYU9|RPOB_PROMH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|194684101|emb|CAR45495.1| DNA-directed RNA polymerase, beta-subunit [Proteus mirabilis HI4320] gi|227164702|gb|EEI49556.1| DNA-directed RNA polymerase, beta-subunit [Proteus mirabilis ATCC 29906] Length = 1342 Score = 1663 bits (4307), Expect = 0.0, Method: Composition-based stats. Identities = 704/1364 (51%), Positives = 961/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PDGQNGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L A+ +E+IL+ F+ K + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMNYSTEDILNLFFEKTTFEISN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L+++ ++ + + + Sbjct: 235 NKLMMTLVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKEQIERIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA D ++ TGE+ A I L + + + I L+ + +++ AYI T+ Sbjct: 292 IAGKVVARDYIDEATGELICAANMEISLDVLARLSQAGHKTIETLFTNDLDHGAYISETI 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + +EDII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEVEGSGILSQEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDALMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V + VT+++ YLSA+EE N IAQANS LD+DG F EELV CR GE L R+++ Sbjct: 592 RVVENNAVTDEIHYLSAIEEGNFIIAQANSVLDDDGHFVEELVTCRHKGESSLFSRDQVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+ + P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRGDKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E + +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDETYAGEAGIDIYSLTKYTRSNQNTCINQTPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYN+EDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNYEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEES 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ + +D +E I + +++R+ +L + +D + + PR +W Sbjct: 952 QLREVKKDLTEELRIFEAGLFARIRGVLIAGG-------------IEADKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K+ + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLADEEKQNQLEQLAEQYDELKAEFAKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVD+VLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGNPVDLVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + + + D+ VLR+AE K Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQKAYDLGMAPRQKVDLDTFSDEEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P +TPVFDGA+E I ML++ADL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPTATPVFDGAEEMEIKEMLKLADLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|22124399|ref|NP_667822.1| DNA-directed RNA polymerase subunit beta [Yersinia pestis KIM 10] gi|45442864|ref|NP_994403.1| DNA-directed RNA polymerase subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|51594638|ref|YP_068829.1| DNA-directed RNA polymerase subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108809610|ref|YP_653526.1| DNA-directed RNA polymerase subunit beta [Yersinia pestis Antiqua] gi|108810385|ref|YP_646152.1| DNA-directed RNA polymerase subunit beta [Yersinia pestis Nepal516] gi|145600988|ref|YP_001165064.1| DNA-directed RNA polymerase subunit beta [Yersinia pestis Pestoides F] gi|153950044|ref|YP_001402811.1| DNA-directed RNA polymerase subunit beta [Yersinia pseudotuberculosis IP 31758] gi|153997219|ref|ZP_02022326.1| DNA-directed RNA polymerase beta chain [Yersinia pestis CA88-4125] gi|165928322|ref|ZP_02224154.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938253|ref|ZP_02226812.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166012038|ref|ZP_02232936.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166214411|ref|ZP_02240446.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167402417|ref|ZP_02307877.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422935|ref|ZP_02314688.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426825|ref|ZP_02318578.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022598|ref|YP_001719103.1| DNA-directed RNA polymerase subunit beta [Yersinia pseudotuberculosis YPIII] gi|186893640|ref|YP_001870752.1| DNA-directed RNA polymerase subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218930752|ref|YP_002348627.1| DNA-directed RNA polymerase subunit beta [Yersinia pestis CO92] gi|229837493|ref|ZP_04457655.1| RNA polymerase, beta subunit [Yersinia pestis Pestoides A] gi|229839429|ref|ZP_04459588.1| RNA polymerase, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899991|ref|ZP_04515131.1| RNA polymerase, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229900560|ref|ZP_04515686.1| RNA polymerase, beta subunit [Yersinia pestis Nepal516] gi|270488916|ref|ZP_06205990.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis KIM D27] gi|294505415|ref|YP_003569477.1| DNA-directed RNA polymerase beta subunit [Yersinia pestis Z176003] gi|41018099|sp|Q8ZAP5|RPOB_YERPE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|81640666|sp|Q66FQ2|RPOB_YERPS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|122382592|sp|Q1C1U1|RPOB_YERPA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|122385351|sp|Q1CN78|RPOB_YERPN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158514113|sp|A4TS29|RPOB_YERPP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166991529|sp|A7FNI3|RPOB_YERP3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699464|sp|B2K113|RPOB_YERPB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699466|sp|B1JJJ9|RPOB_YERPY RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|21957181|gb|AAM84073.1|AE013649_3 RNA polymerase, beta subunit [Yersinia pestis KIM 10] gi|45437730|gb|AAS63280.1| DNA-directed RNA polymerase beta chain [Yersinia pestis biovar Microtus str. 91001] gi|51587920|emb|CAH19523.1| DNA-directed RNA polymerase beta chain [Yersinia pseudotuberculosis IP 32953] gi|108774033|gb|ABG16552.1| DNA-directed RNA polymerase beta chain [Yersinia pestis Nepal516] gi|108781523|gb|ABG15581.1| DNA-directed RNA polymerase beta chain [Yersinia pestis Antiqua] gi|115349363|emb|CAL22334.1| DNA-directed RNA polymerase beta chain [Yersinia pestis CO92] gi|145212684|gb|ABP42091.1| DNA-directed RNA polymerase beta chain [Yersinia pestis Pestoides F] gi|149289327|gb|EDM39406.1| DNA-directed RNA polymerase beta chain [Yersinia pestis CA88-4125] gi|152961539|gb|ABS49000.1| DNA-directed RNA polymerase, beta subunit [Yersinia pseudotuberculosis IP 31758] gi|165913914|gb|EDR32532.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165919661|gb|EDR36994.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165989033|gb|EDR41334.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166204415|gb|EDR48895.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166957146|gb|EDR55167.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048197|gb|EDR59605.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054207|gb|EDR64032.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749132|gb|ACA66650.1| DNA-directed RNA polymerase, beta subunit [Yersinia pseudotuberculosis YPIII] gi|186696666|gb|ACC87295.1| DNA-directed RNA polymerase, beta subunit [Yersinia pseudotuberculosis PB1/+] gi|229682380|gb|EEO78470.1| RNA polymerase, beta subunit [Yersinia pestis Nepal516] gi|229686976|gb|EEO79052.1| RNA polymerase, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229695795|gb|EEO85842.1| RNA polymerase, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704181|gb|EEO91192.1| RNA polymerase, beta subunit [Yersinia pestis Pestoides A] gi|262363481|gb|ACY60202.1| DNA-directed RNA polymerase beta subunit [Yersinia pestis D106004] gi|262367409|gb|ACY63966.1| DNA-directed RNA polymerase beta subunit [Yersinia pestis D182038] gi|270337420|gb|EFA48197.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis KIM D27] gi|294355874|gb|ADE66215.1| DNA-directed RNA polymerase beta subunit [Yersinia pestis Z176003] Length = 1342 Score = 1663 bits (4307), Expect = 0.0, Method: Composition-based stats. Identities = 712/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTAQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ G+ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D V+ TGE+ A + L ++ + + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYVDASTGELICAANMELSLDLLAKLSQAGHKQIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L RE++D Sbjct: 592 RRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDDEGRFLEDLVTCRSKGESSLFSREQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMHPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + ++ +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEAEKLSKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + +S + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|315064608|gb|ADT78388.1| RpoB [Yersinia entomophaga] Length = 1342 Score = 1663 bits (4307), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTEQILDLFFDKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ GV + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGVDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ + + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYIDENTGELICAANMELSLDLLAKLSQAGHKRIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LDEDG F E+LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + +D +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEADKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + DD V+R+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEDVAKLREFIQKAYDLGDNVCQKVDLNTFTDDEVMRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKETEIKELLKLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|30249986|ref|NP_842056.1| DNA-directed RNA polymerase subunit beta [Nitrosomonas europaea ATCC 19718] gi|41017697|sp|Q82T75|RPOB_NITEU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|30139093|emb|CAD85957.1| RNA polymerases beta subunit [Nitrosomonas europaea ATCC 19718] Length = 1357 Score = 1663 bits (4306), Expect = 0.0, Method: Composition-based stats. Identities = 712/1363 (52%), Positives = 956/1363 (70%), Gaps = 7/1363 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K I+ P L+ Q SY FL IAP +R N+GLQAAF SV Sbjct: 1 MSYSFAEKKRIRKSFAKRASILPFPFLLATQIQSYTDFLQAEIAPGKRKNQGLQAAFNSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + S A L+F+SY P FDV +C R LTYA PL+ +RL + D ++ Sbjct: 61 FPIESHSNNARLDFISYMLGSPVFDVKECQQRGLTYAAPLRARVRLTILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FV+ G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTDTGSFVVNGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+PVT+ L A+G +IL+ F+ + Sbjct: 179 RIIPYRGSWLDFEFDPKDYVYFRIDRRRKMPVTTLLKAMGYSPAQILADFFEFDHFILVD 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + F L L G +V D G+ ++ K++T+ ++ L++ + + + + Sbjct: 239 NKIFFNLIPERL-RGELAGFDIVSED-GKVFVQKDKRITAKHVRDLQQANLTKIPVPEEF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+V+ ETGEI A I E L I ++ +I L+V+ +N YI TL Sbjct: 297 LLGKILAADLVDKETGEIIALANSEISETLLGRIRQTQSSEISTLFVNDLNYGPYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T ++FN LF+ ++YDLS VGR+K N R+ Sbjct: 357 RIDETTDQMSAQVAIYRMMRPGEPPTEEAVLALFNGLFYSPERYDLSVVGRMKFNRRVGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DII +IKILV+LRNG+G IDDID+LGNRRVRSVGE+ +NQ+R GL R+ Sbjct: 417 EELTGSTTLSNDDIIDVIKILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLARV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 E+++KER+S + +++MP D INAKPV SA+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 477 EKAVKERLSQAESENLMPHDFINAKPVSSAIREFFGSSQLSQFMDQTNPLSEVTHKRRIS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGFIETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNEYGFIETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G+VT +VVYLSA+EE IAQAN++ D++G FT+E+V CR E L R++I+ Sbjct: 597 RMVRNGRVTEEVVYLSAIEESQYVIAQANANFDQNGVFTDEVVSCRHKNEFTLASRDQIE 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+AE P VGTG+E VVA Sbjct: 657 YVDIAPAQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKPLVGTGIERVVAVH 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG A+ R G+V+ VDA RIVIR + + GVDIY L K+ RSNQNT +NQRP+V Sbjct: 717 SGTAVRTIRGGVVDYVDASRIVIRVHDAEARAGEVGVDIYNLTKYTRSNQNTNINQRPIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 ++GD + R+D+IADG STDLG+LALG+NML+AFMPW+G NFEDS+LISER+VS+D FTSI Sbjct: 777 RMGDVLSRDDVIADGASTDLGELALGQNMLIAFMPWNGLNFEDSILISERVVSDDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE ++RDTKLG EEIT DIPN+SE +DE GI+ +GAEV GD+LVGK+TPK Sbjct: 837 HIEELAAVSRDTKLGTEEITADIPNLSERQRARLDESGIVYIGAEVEAGDVLVGKVTPKS 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSL VP+G+SGTV+DV+IF R G+D+++RS + + Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLHVPAGISGTVIDVQIFTREGVDRDKRSKQIIAD 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ +D D+ I++ + + R +L G+ A GPK K++ ++ D + + W+ Sbjct: 957 ELGRFKKDLADQMRIVEADAFQRAERLLTGKVAAGGPKKLAKNSTITRDYLENVEKHHWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE +E +K + + + F+ K K+ GD++PPGV ++VKV++A+KR Sbjct: 1017 DIRLVDENTSLQLEQIKDSLVQKRKLFDLAFEEKHRKLSQGDELPPGVQKMVKVYIAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +QSGDKMAGRHGNKG++S+I+P EDMP++ DGTPVD+VLNPLGVPSRMN+GQ+ E HLG Sbjct: 1077 RLQSGDKMAGRHGNKGVISKIVPIEDMPYMADGTPVDVVLNPLGVPSRMNIGQVLEVHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA LGK++ ++ + DI R FL K+ E ++ +DD VL +A S Sbjct: 1137 WAAKELGKRVNEMLASQRNVSDI---RDFLNKIYNNSGKQEDLTSLEDDEVLALARNLSS 1193 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP +TPVFDGA E I ML++A L ESGQ+ LYDG TGE FDRPVTVGY+++LKL+H+ Sbjct: 1194 GVPFATPVFDGAHESEIKQMLKLAGLPESGQTTLYDGRTGEAFDRPVTVGYMHVLKLHHL 1253 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV Sbjct: 1254 VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDV 1313 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 GRT+VYESIV G+ + G PESFNVLVKE+++LGL IDLE Sbjct: 1314 NGRTKVYESIVKGDHKIDAGMPESFNVLVKEIRSLGLDIDLEE 1356 >gi|259906929|ref|YP_002647285.1| DNA-directed RNA polymerase subunit beta [Erwinia pyrifoliae Ep1/96] gi|224962551|emb|CAX54006.1| similar to bifunctional DNA-directed RNA polymerase subunit beta-beta\' [Erwinia pyrifoliae Ep1/96] gi|283476722|emb|CAY72551.1| DNA-directed RNA polymerase beta chain [Erwinia pyrifoliae DSM 12163] Length = 1342 Score = 1663 bits (4306), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 966/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+VY R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVYQIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G +E G+++T+ ++ L++ V + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIES--NGTVYVEKGRRITARHIRQLEKDAVAHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ I A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVVAKDYIDESTGELLIAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIQVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQAN++LD++G F ++LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFVDDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L + ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRINYLLVSGG-------------IEAEKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDELKHEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEDVSRLREFIQRAYDLGTDVRQKVDLNTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLQLGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|292486727|ref|YP_003529597.1| DNA-directed RNA polymerase subunit beta [Erwinia amylovora CFBP1430] gi|292897960|ref|YP_003537329.1| DNA-directed RNA polymerase subunit beta [Erwinia amylovora ATCC 49946] gi|291197808|emb|CBJ44903.1| DNA-directed RNA polymerase beta-subunit [Erwinia amylovora ATCC 49946] gi|291552144|emb|CBA19181.1| DNA-directed RNA polymerase beta chain [Erwinia amylovora CFBP1430] gi|312170793|emb|CBX79054.1| DNA-directed RNA polymerase beta chain [Erwinia amylovora ATCC BAA-2158] Length = 1342 Score = 1663 bits (4306), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 965/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+VY R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVYQIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G +E G+++T+ ++ L++ V + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIES--NGTVYVEKGRRITARHIRQLEKDAVAHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ I A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVVAKDYIDESTGELLIAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIQVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQAN++LD++G F ++LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFVDDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRINYLLVSGGV-------------EAEKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLSDEDKQNQLEQLAEQYDELKHEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVSKLREFIQRAYDLGTDVRQKVDLNTFSDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLQLGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|304399303|ref|ZP_07381168.1| DNA-directed RNA polymerase, beta subunit [Pantoea sp. aB] gi|304353159|gb|EFM17541.1| DNA-directed RNA polymerase, beta subunit [Pantoea sp. aB] Length = 1342 Score = 1662 bits (4305), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 967/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL+V++ + G ++ Sbjct: 57 FPIASYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVVYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQFTTPQILDIFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G +E +++T+ ++ L++ G++ + + + Sbjct: 235 NKLQMELVPERL-RGETATFDIE--ANGTVYVEKARRITARHIRQLEKDGIQHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ I A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDESTGELIIAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG V++++ YLSA+EE N IAQAN+ LD++G+F ++LV CR GE L R+++D Sbjct: 592 RRVIDGLVSDEIHYLSAIEEGNYVIAQANAPLDDNGAFVDDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMHAGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L +D + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIQNVLISGGV-------------EADKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEAKQNQLEQLAEQYDELKHEFEKKLEGKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQRAYDLGSDLRQKVDLNTFSDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLQLGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|290477016|ref|YP_003469928.1| RNA polymerase subunit beta [Xenorhabdus bovienii SS-2004] gi|289176361|emb|CBJ83166.1| RNA polymerase, beta subunit [Xenorhabdus bovienii SS-2004] Length = 1342 Score = 1662 bits (4305), Expect = 0.0, Method: Composition-based stats. Identities = 705/1364 (51%), Positives = 963/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQNGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L A+ +E+IL+ F+ K ++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRAMNYSTEDILNLFFNKTIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ V + + + Sbjct: 235 NKLQMTLVPERL-RGETASFDIE--ANGKLYVEKGRRITARHIRQLEKDQVDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGEI A + L + S + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYIDQNTGEILCAANMELSLDLLARLSQSGHKTIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L+ Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLDR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 TEIEGSGILSKEDITDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ YLSA+EE N IAQAN+ LDE+G F E+LV CR E L R+++ Sbjct: 592 RLVRDGVVTDEIHYLSAIEEGNYVIAQANTVLDEEGHFVEDLVTCRHYDESSLFNRDQVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIVI+ E ++ +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGVIQYVDASRIVIKVNEDEMYAGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGELVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GV+GT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVAGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + +++R+ +L ++ +S+ PR +W Sbjct: 952 QLRQAKKDLTEELRIFEAGLFARIHSVLVAGGV-------------EAEKLSKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K+ E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLADEEKQNQLEQLAEQYDELKTEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE K Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQKAYDLGDDTRQKVDLNTFTDEEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++A L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKETEIKELLQLAGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|325982732|ref|YP_004295134.1| DNA-directed RNA polymerase, beta subunit [Nitrosomonas sp. AL212] gi|325532251|gb|ADZ26972.1| DNA-directed RNA polymerase, beta subunit [Nitrosomonas sp. AL212] Length = 1357 Score = 1662 bits (4305), Expect = 0.0, Method: Composition-based stats. Identities = 717/1363 (52%), Positives = 967/1363 (70%), Gaps = 7/1363 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++ IP L+ Q SY FL NIAP +R +GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRASVLSIPFLLATQIESYAAFLQENIAPSKRRTQGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + + A L+F+SYE P FDV +C R LTYA PL+ +RL + D ++ Sbjct: 61 FPIESHTKNARLDFISYELGSPVFDVKECQQRGLTYASPLRARVRLTIMDK--EISKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT+ G+FVI G +R+VVSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTETGSFVINGTERVVVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+PVT+ L A+G SE+IL F+ + Sbjct: 179 RIIPYRGSWLDFEFDPKDCLYFRIDRRRKMPVTTLLKAIGCTSEQILKEFFIFDCFHFSD 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 F L D + G S + + +++ K++T+ ++ ++E + L + D Sbjct: 239 KGIRFELVP-DRLRGEVASFDIF-AKGKKIIVQKDKRITAKHIREMQEAKIDQLEVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGEI A D I E+++ + ++ I LYV+ +N+ AYI TL Sbjct: 297 LLGRILAQNIVDPDTGEIIALANDEISEETIAKFRIGNVKKINTLYVNDLNHGAYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D +A + IYR+MRPG+ T +++F LF+ ++YDLS VGR+K N R+ Sbjct: 357 KIDETTDEMNAQIAIYRMMRPGEPPTEDAVKALFAGLFYSPERYDLSVVGRMKFNRRVGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + EDIIA+IKILV+LRNG+G IDDID+LGNRRVRSVGE+ +NQ+R GL+R+ Sbjct: 417 TELTGSPTLSNEDIIAVIKILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRSGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + +++MP DLINAKPV +A EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLSQAESENLMPHDLINAKPVSAAAREFFGSSQLSQFMDQTNPLSEITHKRRIS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGFIETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNEYGFIETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 +V + +VT+++ YLSA+EE N IAQAN+ LD + E+V CR E L ++I+ Sbjct: 597 SRVKNSQVTDEIDYLSAIEEGNFMIAQANAELDHNHRLISEIVSCRYKNEFALSSPDRIE 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+AE P VGTG+E VVA Sbjct: 657 YVDVAPAQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKPLVGTGIERVVAMH 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + AKR GIV+ VDA RIV+R + + GVDIY L+K+ RSNQNT +NQRPLV Sbjct: 717 SGTTVRAKRGGIVDYVDAGRIVVRVHDIETHMGEVGVDIYNLIKYTRSNQNTNINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD + ++D+IADG STD+G+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED FTSI Sbjct: 777 KVGDNISKDDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISERIVAEDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V++RDTKLG EEIT DIPN+SE L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 837 HIEELSVVSRDTKLGTEEITADIPNLSEYQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI++++R+ ++ + Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGISGTVIDVQVFTREGIERDKRAQNIIDD 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ +D D+ I++ + +SRL +L G+ A GP K ++++ + + W+ Sbjct: 957 ELDRYKKDLADQMRIVEEDAFSRLERLLIGKVATGGPNKLAKGKEITAEYLQSFDPHYWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE +E ++ + + F+ K +K+ GD++ PGV ++VK+++A+KR Sbjct: 1017 DIRLMDEDASIQLEQVRESMVQKRKAFDVAFEEKKKKLTQGDELAPGVQKMVKIYIAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++S+I+P EDMP++ DGTPVD+VL+PLGVPSRMNVGQI E HLG Sbjct: 1077 RLQPGDKMAGRHGNKGVISKIVPLEDMPYMADGTPVDVVLHPLGVPSRMNVGQILEVHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLGKKI ++ KA +I+ +R F++K+ E IS D +L +AE + Sbjct: 1137 WAAKGLGKKIDGML---KAQRNINEIRDFIDKIYNESGKKENISSLSDKEILSLAENLIA 1193 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP +TPVFDGA E+ I ML +A L SGQ LYDG TGE FDR VTVGY+++LKL+H+ Sbjct: 1194 GVPFATPVFDGATEKEIKDMLELAGLPRSGQITLYDGRTGEAFDRSVTVGYMHVLKLHHL 1253 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1254 VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1313 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 GRT+VYESIV G+ + G PESFNVLVKE+++LG+ IDLE Sbjct: 1314 TGRTKVYESIVKGDHKIDAGMPESFNVLVKEIRSLGMDIDLEQ 1356 >gi|238790616|ref|ZP_04634381.1| DNA-directed RNA polymerase subunit beta [Yersinia frederiksenii ATCC 33641] gi|238721285|gb|EEQ12960.1| DNA-directed RNA polymerase subunit beta [Yersinia frederiksenii ATCC 33641] Length = 1342 Score = 1662 bits (4304), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTAQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ G+ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D V+ TGE+ A + L ++ + + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYVDENTGELICAANMELSLDLLAKLSQAGHKQIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LDEDG F E+LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + +D +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEADKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + + +S + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDSVCQKVDLSTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|310766074|gb|ADP11024.1| DNA-directed RNA polymerase beta-subunit [Erwinia sp. Ejp617] Length = 1342 Score = 1662 bits (4304), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 965/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+VY R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVYQIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G +E G+++T+ ++ L++ V + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIES--NGTVYVEKGRRITARHIRQLEKDAVAHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ I A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVVAKDYIDESTGELLIAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIQVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQAN++LD++G F ++LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFVDDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRINYLLVSGGV-------------EAEKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLSDEDKQNQLEQLAEQYDELKHEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEDVSRLREFIQRAYDLGTDVRQKVDLNTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLQLGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|308188908|ref|YP_003933039.1| DNA-directed RNA polymerase beta chain [Pantoea vagans C9-1] gi|308059418|gb|ADO11590.1| DNA-directed RNA polymerase beta chain [Pantoea vagans C9-1] Length = 1342 Score = 1662 bits (4304), Expect = 0.0, Method: Composition-based stats. Identities = 708/1364 (51%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIASYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQFTTPQILDIFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G +E G+++T+ ++ L++ G++ + + + Sbjct: 235 NKLQMELVPERL-RGETATFDIE--ANGTVYVEKGRRITARHIRQLEKDGIQHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ + A + L ++ S + I L+ + +++ Y+ TL Sbjct: 292 IAGKVVAKDYIDESTGELIVAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG V++++ YLSA+EE N IAQAN+ LD++G+F ++LV CR GE L R+++D Sbjct: 592 RRVIDGLVSDEIHYLSAIEEGNYVIAQANAPLDDNGAFVDDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMHAGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L +D + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIQNVLISGGV-------------EADKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEAKQNQLEQLAEQYDELKHEFEKKLEGKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQRAYDLGTDLRQRVDLNTFSDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLQLGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|188025530|ref|ZP_02958950.2| hypothetical protein PROSTU_00731 [Providencia stuartii ATCC 25827] gi|188023206|gb|EDU61246.1| hypothetical protein PROSTU_00731 [Providencia stuartii ATCC 25827] Length = 1357 Score = 1662 bits (4304), Expect = 0.0, Method: Composition-based stats. Identities = 711/1364 (52%), Positives = 967/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 16 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PDGQNGLEAAFRSV 71 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L++VSY P FDV +C R +TY+ PL++ LRLIV++ + G ++ Sbjct: 72 FPIQSYSGNAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLIVYEREAPEG--TV 129 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 130 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 189 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L A+ +E+IL+ F+ K V+ R Sbjct: 190 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMDYSTEDILNLFFDKTVFQIRD 249 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L+++ V + + + Sbjct: 250 NKLMMTLVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRLLEKEEVNSIEVPVEY 306 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA D ++ TGE+ A + L + + + I L+ + +++ AYI TL Sbjct: 307 IAGKVVARDYIDESTGELICAANMELSLDMLARLSQAGHKTIETLFTNDLDHGAYISETL 366 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ LFF D+YDLS VGR+K N L Sbjct: 367 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFDNLFFSEDRYDLSAVGRMKFNRSLGR 426 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + +EDII +++ L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 427 DEIEGSGILSEEDIIDVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 486 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 487 ERAVKERLSLGDLDALMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 546 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 547 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 606 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ YLSA+EE N IAQAN+ L EDGSF EEL+ CR GE L R++++ Sbjct: 607 RLVRDGIVTDEIHYLSAIEEGNFIIAQANTVLAEDGSFVEELITCRNRGESSLFSRDQVE 666 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 667 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 726 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 727 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 786 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 787 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 846 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 847 HIQELSCVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 906 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 907 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEET 966 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + I++R+ +L + ++ + + PR +W Sbjct: 967 QLRDAKKDLTEELRIFEAGIFARIRSVLISGG-------------IEAEKLDKLPRDRWL 1013 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++ DE+ Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1014 ELSLADEEKQNQLEQLAEQYDELKSEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1073 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1074 QIQPGDKMAGRHGNKGVISKINPVEDMPYDENGNPVDIVLNPLGVPSRMNIGQILETHLG 1133 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE K Sbjct: 1134 MAAKGIGDKINAMLKQQQEVAKLREFIQKAYDLGDDPRQKVDLNTFSDEEVLRLAENLKK 1193 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1194 GMPIATPVFDGAKEIEIKELLKLGGLPTSGQITLFDGRTGEKFERQVTVGYMYMLKLNHL 1253 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1254 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1313 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1314 NGRTKMYKNIVDGSHQMEPGMPESFNVLLKEIRSLGINIELEDE 1357 >gi|88862608|gb|ABD53485.1| DNA-directed RNA polymerase subunit beta [Jannaschia sp. CCS1] Length = 1362 Score = 1662 bits (4304), Expect = 0.0, Method: Composition-based stats. Identities = 836/1363 (61%), Positives = 1068/1363 (78%), Gaps = 13/1363 (0%) Query: 26 IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPK 85 +P+LIEVQK+SYD FL + EG++ F+SVFPI F+ A+LEFV YE + PK Sbjct: 1 MPNLIEVQKSSYDLFLKSGDQLEPMDGEGIKGVFQSVFPIKDFNETAILEFVKYELETPK 60 Query: 86 FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFV 145 FDV++C RDLTYA PLK+TLRLIVFD+DE TGAKS+KDIKEQ ++MGD+PLMT +GTFV Sbjct: 61 FDVEECQQRDLTYAAPLKVTLRLIVFDIDEDTGAKSVKDIKEQDVFMGDMPLMTPNGTFV 120 Query: 146 IKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVR 205 + G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ACRIIP +G W+D EFD+KDI+ R Sbjct: 121 VNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFACRIIPYRGSWLDFEFDAKDIVFSR 180 Query: 206 IDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLV 265 IDRRRK+PVT+ L ALG+D E I+ +Y + + + + + G + ++ LV Sbjct: 181 IDRRRKLPVTTLLYALGLDQEGIMDAYYDTVTFKMVKNKGWSTKFFPERVRGTRPTTDLV 240 Query: 266 DIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSDCLCGLYVAEDIVNGETGEIYIEA 324 D TGE + E+GKK+T +K ++G ++ L + D + G + A+DI+N ETG IY+EA Sbjct: 241 DAKTGEVIAEAGKKVTPRAVKKWIDEGSIENLLVPFDGIVGRFAAKDIINEETGAIYVEA 300 Query: 325 GDVIDEK----------SLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 GD + + +L+E+ + I +IP+L +D+VN Y+RNTL DKN +R+ AL Sbjct: 301 GDELTWELDKAGEVSGGTLKELIDAGITEIPVLDIDNVNVGPYMRNTLAVDKNLNRESAL 360 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 +DIYRVMRPG+ T A ++F+ LFFDS++YDLS VGRVKMNMRL+LD D +R +RKE Sbjct: 361 MDIYRVMRPGEPPTVEAASNLFDQLFFDSERYDLSAVGRVKMNMRLDLDAEDTMRTLRKE 420 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DII+ IK LV+LR+G+G IDDID+LGNRRVRSVGE+++NQYR+GLLRMER+IKER+SSV+ Sbjct: 421 DIISCIKALVELRDGRGDIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSVE 480 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 ID+VMPQDLINAKP +AV EFF SSQLSQ + N LS +TH RRLSALG GG+ R RA Sbjct: 481 IDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERA 540 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVHPTHYGR+CP ET EG NIGL++SL ++ARVN YGFIETPYR+V D V++DV Sbjct: 541 GFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATYARVNKYGFIETPYRRVNDAVVSDDV 600 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 VY+SA EE +AQAN++LD+DG F ++V R +GE L PRE ID ID SPKQ+VS+ Sbjct: 601 VYMSATEEMRHTVAQANANLDDDGKFVNDMVNTRMSGEYTLNPREAIDLIDVSPKQLVSV 660 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 AASLIPFLENDD+NR LMG NMQRQAVPLL+A+APFVGTG+ESVVAK SGAAI+AKR G+ Sbjct: 661 AASLIPFLENDDANRALMGSNMQRQAVPLLQADAPFVGTGIESVVAKDSGAAIMAKRGGV 720 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 ++QVDA RIVIR+ E L+ +GVDIYRL KFQRSNQNTC+NQRPLVKVGD++ + ++I Sbjct: 721 IDQVDAQRIVIRATED-LELGDAGVDIYRLRKFQRSNQNTCINQRPLVKVGDKIGKGEVI 779 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGPSTD+G+LALG+N++VAFMPW+GYN+EDS+LISER+ +DVFTSIHIEEFEV ARDT Sbjct: 780 ADGPSTDIGELALGKNVIVAFMPWNGYNYEDSILISERISRDDVFTSIHIEEFEVAARDT 839 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEITRDIPNV EE L+N+DE GI+ +GAEV PGDILVGKITPKGESPMTPEEKLLR Sbjct: 840 KLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPKGESPMTPEEKLLR 899 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFGEKA DVRDTSLRV G GT+V+VR+FNRHG++K+ER++ +ERE++E LARD+DDE Sbjct: 900 AIFGEKASDVRDTSLRVKPGDYGTIVEVRVFNRHGVEKDERALQIEREEVERLARDRDDE 959 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISE-YPRSQWWQFAVQDEKVQR 1033 VIL+RNIY+RL ++ G+ AV GPKG K +TV+ DL+ R QWWQ A++DEK Sbjct: 960 LVILERNIYARLRGMIMGKTAVKGPKGVKPNTVIDEDLLDGQLSRGQWWQLALEDEKDAA 1019 Query: 1034 NVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGR 1093 ++E+L Q++T K L+ RF++K+EK++ GDD+PPGV+++VKVF+A+KR +Q GDKMAGR Sbjct: 1020 HIEALNQQFDTQKRALDHRFEDKVEKVRRGDDLPPGVMKMVKVFIAVKRKLQPGDKMAGR 1079 Query: 1094 HGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIK 1153 HGNKG++S+++P EDMPFL DGTPVD VLNPLGVPSRMNVGQI ETH+GWA G+G +I Sbjct: 1080 HGNKGVISKVVPMEDMPFLADGTPVDFVLNPLGVPSRMNVGQILETHMGWAARGMGLQID 1139 Query: 1154 SLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDG 1213 +++Y+ +GD++P+R L+ G + + +D D++S+L A GVP++TPVFDG Sbjct: 1140 EALDEYRRSGDMTPVRDALKIAYGDDVYDDAFADRDEESLLEAAGNVTKGVPIATPVFDG 1199 Query: 1214 ADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTG 1273 A E +N L A SGQS L+DG TGE F R VTVG Y+LKL+H+V DK++ARSTG Sbjct: 1200 AKEADVNDALIRAGFSTSGQSKLFDGRTGEQFAREVTVGVKYLLKLHHLVDDKIHARSTG 1259 Query: 1274 SYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIV 1333 YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYESIV Sbjct: 1260 PYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYESIV 1319 Query: 1334 AGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 G D FE G PESFNVLVKE++ LGL+++L ++ E Sbjct: 1320 KGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEDDEGGIAAE 1362 >gi|320013657|gb|ADV97228.1| RNA polymerase, beta subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 1342 Score = 1662 bits (4303), Expect = 0.0, Method: Composition-based stats. Identities = 711/1364 (52%), Positives = 969/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTAQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ G+ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D V+ TGE+ A + L ++ + + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYVDASTGELICAANMELSLDLLAKLSQAGHKQIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L RE++D Sbjct: 592 RRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDDEGRFLEDLVTCRSKGESSLFSREQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMHPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R ++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDDVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + ++ +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEAEKLSKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + +S + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|238794959|ref|ZP_04638556.1| DNA-directed RNA polymerase subunit beta [Yersinia intermedia ATCC 29909] gi|238725717|gb|EEQ17274.1| DNA-directed RNA polymerase subunit beta [Yersinia intermedia ATCC 29909] Length = 1342 Score = 1662 bits (4303), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSFTTAQILDLFFDKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ G+ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYIDTNTGELICAANMELSLDLLAKLSQSGHKQIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LDEDG F E+LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + +D +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEADKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + +S + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|297181147|gb|ADI17344.1| hypothetical protein [uncultured Oceanospirillales bacterium HF0070_21F08] Length = 1380 Score = 1662 bits (4303), Expect = 0.0, Method: Composition-based stats. Identities = 719/1387 (51%), Positives = 976/1387 (70%), Gaps = 30/1387 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK P+++++P L+ +Q SY FL + + DER EGL+AAF+SV Sbjct: 1 MAYSFTEKKRIRKDFGKLPKVMEVPYLLAIQLDSYRKFLQHDKSADERFEEGLEAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI+++SG A LE+ YEF P FDV +C+ R TYA PL++ +RL+++D + +I Sbjct: 61 FPISSYSGNAALEYAGYEFGKPVFDVKECIIRGTTYAAPLRVRIRLVIYDKE---SNGAI 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ Sbjct: 118 KDIREQQVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD+++VRIDRRRK+P T L ALG S+EIL F+ Sbjct: 178 RVIPYRGSWLDFEFDPKDMVYVRIDRRRKLPATILLRALGYTSDEILDIFFETNEILVED 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + ++ D E V+E G+++T+ ++ L++ +++L I ++ Sbjct: 238 GVYRMRLVPERL-RGETATFDILAGD--EVVVERGRRVTARHIRQLEKANIEYLEIPAEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G Y+A+ I++ ETGE+ +E + +LE++ I+ LY + ++N ++ +TL Sbjct: 295 LQGRYLAKSIIDEETGEVLLECNTELGADALEKLEKGGIKRFETLYTNDLDNGPFMSDTL 354 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL Sbjct: 355 RADPTRSPLEALVEIYRMMRPGEPPTKEAAENLFRNLFFTDERYDLSGVGRMKFNRRLGR 414 Query: 423 DTPDDVRHIRKEDIIA-----------------------IIKILVDLRNGKGTIDDIDNL 459 + + + ++K LVD+RNG G DDID+L Sbjct: 415 EDVTGPGIVYDGRYFSNRTDDEGKQYFEQIGGETSDIIDVLKTLVDIRNGNGVTDDIDHL 474 Query: 460 GNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 GNRR+RSVGEM +NQ+R+GL+R+ER++KER+S + + +MPQDLINAKPV +AV EFF S Sbjct: 475 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLAESEGLMPQDLINAKPVAAAVKEFFGS 534 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 SQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG N Sbjct: 535 SQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 594 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 IGL++SL S+AR N YGF+E+PYRKV DGKVT+++ YLSA+EE IAQ ++ + +DG Sbjct: 595 IGLINSLASYARTNEYGFLESPYRKVVDGKVTDEIEYLSAIEEAECVIAQVDAKMTDDGG 654 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQ 699 F E+ V R E ++ R+ I +D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQ Sbjct: 655 FVEDFVTVRHRYEFTVMERDTITHMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQ 714 Query: 700 AVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGV 759 AVP L+AE P VGTGME VA+ SG +VA+R G+V +VDA RI+++ + ++ +GV Sbjct: 715 AVPTLRAEKPLVGTGMERHVARDSGVCVVAQRGGVVNKVDASRIIVKVNDDEVVEGEAGV 774 Query: 760 DIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWH 819 DIY L K+ RSNQNTC+NQRPLVKVGD V DI+ADGPS D+G+LALG+NM VAFMPW+ Sbjct: 775 DIYNLTKYTRSNQNTCINQRPLVKVGDRVSARDIMADGPSVDMGELALGQNMRVAFMPWN 834 Query: 820 GYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDEC 879 GYNFEDS+LISER+V ED FTSIHI+E +ARDTKLG EEIT DIPNV E L +DE Sbjct: 835 GYNFEDSILISERVVKEDRFTSIHIQELTAIARDTKLGAEEITADIPNVGEAALGKLDES 894 Query: 880 GIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTV 939 GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV SGV GTV Sbjct: 895 GIVYIGAEVEAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVSSGVKGTV 954 Query: 940 VDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGP 999 +DV++F R G++K+ER+ +E++ ++ +D DE IL+R+ RL ++ G+ G Sbjct: 955 IDVQVFTRDGVEKDERAKQIEQDALDKFRKDLKDEYRILERDSLDRLRTVMVGKKVNGG- 1013 Query: 1000 KGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 G K+ T L+ ++ + +QW++ D+ V +E E K ++R+K+K K Sbjct: 1014 AGLKRGTELTDAILDDLDAAQWFELRPADDDVAEQLERTHQYLEQHKKEQDERYKDKQSK 1073 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 I GDD+ GVL+VVKV++A+KR IQ GDKMAGRHGNKG++S I+P EDMP+ + G PVD Sbjct: 1074 ISGGDDLSHGVLKVVKVYLAIKRRIQPGDKMAGRHGNKGVISVIMPEEDMPYDEHGVPVD 1133 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 +VLNPLGVPSRMNVGQI ETHLGWA GLG++I +++ K ++ + G G Sbjct: 1134 VVLNPLGVPSRMNVGQILETHLGWAAKGLGERIGEMLDQEKKATEVRDFLDQIYNKTGAG 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDG 1239 E+ + + ++ +AE ++GVP++T VFDGA E I ++L +A D SGQ L+DG Sbjct: 1194 GTDEEWGSFSEADIMELAENLRAGVPMATAVFDGAKEFEIKALLELAGYDRSGQIQLWDG 1253 Query: 1240 LTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEV 1299 +GE FDR VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEV Sbjct: 1254 RSGEQFDRKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1313 Query: 1300 WCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGL 1359 W ++AYGAAY LQEMLT+KSDDV GRTR+Y++IV G+ + G PESFNVL+KE+++LG+ Sbjct: 1314 WALEAYGAAYTLQEMLTVKSDDVNGRTRIYKNIVDGDHRMDPGMPESFNVLLKEIRSLGI 1373 Query: 1360 SIDLENS 1366 +I+LEN Sbjct: 1374 NIELEND 1380 >gi|161523421|ref|YP_001578433.1| DNA-directed RNA polymerase subunit beta [Burkholderia multivorans ATCC 17616] gi|189351806|ref|YP_001947434.1| DNA-directed RNA polymerase subunit beta [Burkholderia multivorans ATCC 17616] gi|221201557|ref|ZP_03574595.1| DNA-directed RNA polymerase, beta subunit [Burkholderia multivorans CGD2M] gi|221207368|ref|ZP_03580378.1| DNA-directed RNA polymerase, beta subunit [Burkholderia multivorans CGD2] gi|221213506|ref|ZP_03586481.1| DNA-directed RNA polymerase, beta subunit [Burkholderia multivorans CGD1] gi|226699381|sp|A9ADI5|RPOB_BURM1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|160340850|gb|ABX13936.1| DNA-directed RNA polymerase, beta subunit [Burkholderia multivorans ATCC 17616] gi|189335828|dbj|BAG44898.1| DNA-directed RNA polymerase, beta subunit [Burkholderia multivorans ATCC 17616] gi|221166958|gb|EED99429.1| DNA-directed RNA polymerase, beta subunit [Burkholderia multivorans CGD1] gi|221172956|gb|EEE05393.1| DNA-directed RNA polymerase, beta subunit [Burkholderia multivorans CGD2] gi|221178373|gb|EEE10782.1| DNA-directed RNA polymerase, beta subunit [Burkholderia multivorans CGD2M] Length = 1368 Score = 1662 bits (4303), Expect = 0.0, Method: Composition-based stats. Identities = 700/1374 (50%), Positives = 965/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL ++ +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVPATQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D E + Sbjct: 61 FPIVSHNGFARLEFVSYALSAPAFNIKECQQRGLTYCSALRAKVRLVILDK-ESPNKPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ KF+ + D Sbjct: 240 EGAQLEFVPERL-RGEVARFDITD-RDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+GETGE+ A D I E LE++ + I++I LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGETGEVIANANDEITESVLEKLREAGIKEIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ + YDLS VGR+K N R+ Sbjct: 358 RVDETTDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+ + YLSA+EE IAQAN+++D++G T+ELV R AGE ++V ++I Sbjct: 598 RKVVDGKVTDQIDYLSAIEEGRYMIAQANAAIDDEGRLTDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I LR+FL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEELRAFLTKIYNESGRAEDLDSFSDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQ----------SILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA E+ + ML +A D+ + LYDG TGEPF+R VTVG Sbjct: 1195 GVPFATPVFDGATEDEMAKMLDLAFPDDIAKQLDMNPSKNQVRLYDGRTGEPFERRVTVG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|332159912|ref|YP_004296489.1| DNA-directed RNA polymerase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607538|emb|CBY29036.1| DNA-directed RNA polymerase beta subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325664142|gb|ADZ40786.1| DNA-directed RNA polymerase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863591|emb|CBX73703.1| DNA-directed RNA polymerase subunit beta [Yersinia enterocolitica W22703] Length = 1342 Score = 1661 bits (4302), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTAQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ G+ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ + + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYIDENTGELICAANMELSLDLLAKLSQAGHKQIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LDEDG F E+LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + +D +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEADKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + +S + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|293394022|ref|ZP_06638326.1| DNA-directed RNA polymerase subunit beta [Serratia odorifera DSM 4582] gi|291423462|gb|EFE96687.1| DNA-directed RNA polymerase subunit beta [Serratia odorifera DSM 4582] Length = 1365 Score = 1661 bits (4302), Expect = 0.0, Method: Composition-based stats. Identities = 711/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 24 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 79 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 80 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 137 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 138 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 197 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ KI + R Sbjct: 198 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKITFEIRD 257 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ ++ + + + Sbjct: 258 NKLQMELVPERL-RGETASFDIE--ANGKIYVEKGRRITARHIRQLEKDEIQSIEVPVEY 314 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ AYI T+ Sbjct: 315 IAGKVVAKDYIDTNTGELICSANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETV 374 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 375 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 434 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 435 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 494 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 495 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 554 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 555 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 614 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 615 RRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDEEGRFVEDLVTCRSKGESSLFSRDQVD 674 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 675 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 734 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 735 SGVTAVAKRGGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 794 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 795 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 854 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 855 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 914 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 915 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 974 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L ++ +++ PR +W Sbjct: 975 QLKQAKKDLTEELQILEAGLFARIHAVLVAGGV-------------EAEKLAKLPRDRWL 1021 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1022 ELGLTDEDKQNQLEQLAEQYDELKSDFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1081 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1082 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1141 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI ++ + + + ++ + DD VLR+AE K Sbjct: 1142 MAAKGIGEKINQMLKQQQEVAKLREFIQKAYDLGDDVCQKVDLNTFSDDEVLRLAENLKK 1201 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L M + SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1202 GMPIATPVFDGAKETEIKQLLEMGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1261 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1262 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1321 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1322 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE 1365 >gi|317494913|ref|ZP_07953323.1| DNA-directed RNA polymerase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917101|gb|EFV38450.1| DNA-directed RNA polymerase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 1342 Score = 1661 bits (4302), Expect = 0.0, Method: Composition-based stats. Identities = 707/1364 (51%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTEQILELFFDKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ G+ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ADGKVYVEKGRRITARHIRQLEKDGITLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ + + I L+ + +++ AYI T+ Sbjct: 292 IAGKVVAKDYIDENTGELICAANMELSLDLLAKLSQAGYKRIETLFTNDLDHGAYISETI 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII +++ L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIEVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D +MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDMLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RRVRDGIVTDEIHYLSAIEEGNYVIAQANSNLDDEGRFIEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC++Q P V Sbjct: 712 SGVTAVAKRGGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FTSI Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTSI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ ++L ++ +++ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHDVLVSGGV-------------EAEKLAKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLADEAKQNQLEQLAEQYDELKSDFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + T +S + DD V+R+AE K Sbjct: 1119 MAAKGIGEKINAMLKQQQEVAKLREFIQKAYDLGDNTRQTVDLSTFTDDEVMRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L + + SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GLPIATPVFDGAKEKEIKELLTLGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|212709026|ref|ZP_03317154.1| hypothetical protein PROVALCAL_00058 [Providencia alcalifaciens DSM 30120] gi|212688315|gb|EEB47843.1| hypothetical protein PROVALCAL_00058 [Providencia alcalifaciens DSM 30120] Length = 1342 Score = 1661 bits (4302), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PDGQNGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L++VSY P FDV +C R +TY+ PL++ LRLIV++ + G ++ Sbjct: 57 FPIQSYSGNAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLIVYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L A+ ++EEIL+ F+ K V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMDYNTEEILNLFFEKTVFQIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L+++ + + + + Sbjct: 235 NKLMMTLVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKEEINSIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA D ++ TGE+ A + L + S + I L+ + +++ AYI T+ Sbjct: 292 IAGKVVARDYIDESTGELICAANMELSLDMLARLSQSGHKTIETLFTNDLDHGAYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ LFF D+YDLS VGR+K N LN Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFDNLFFSEDRYDLSAVGRMKFNRSLNR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + +EDII +++ L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSEEDIIDVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDALMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ YLSA+EE N IAQAN+ L +DG F EEL+ CR GE L RE+++ Sbjct: 592 RLVRDGIVTDEIHYLSAIEEGNFIIAQANTVLSDDGRFIEELITCRNKGESSLFSREQVE 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VA+R G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVARRGGSVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLR+P+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRIPNGVSGTVIDVQVFTRDGVEKDKRALEIEET 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + ++SR+ +L + ++ + + PR +W Sbjct: 952 QLRDAKKDLTEELRIFESALFSRIRSVLISGG-------------IEAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + A+ DE+ Q +E L QY+ KS E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELALADEEKQNQLEQLAEQYDELKSEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPVEDMPYDENGNPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + D+ V+R+AE + Sbjct: 1119 MAAKGIGEKINAMLKQQQEVAKLREFIQKAYDLGDDPRQKVDLNTFSDEEVMRLAENLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEKEIKELLKLGGLPTSGQITLFDGRTGEKFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGSHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|238785550|ref|ZP_04629531.1| DNA-directed RNA polymerase subunit beta [Yersinia bercovieri ATCC 43970] gi|238713535|gb|EEQ05566.1| DNA-directed RNA polymerase subunit beta [Yersinia bercovieri ATCC 43970] Length = 1342 Score = 1661 bits (4302), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTTQILDLFFDKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ G+ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKQIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LDEDG F E+LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + +D +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEADKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + +S + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|294634221|ref|ZP_06712766.1| DNA-directed RNA polymerase, beta subunit [Edwardsiella tarda ATCC 23685] gi|291092346|gb|EFE24907.1| DNA-directed RNA polymerase, beta subunit [Edwardsiella tarda ATCC 23685] Length = 1353 Score = 1661 bits (4301), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 12 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 67 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 68 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 125 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 126 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 185 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 186 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDFTTEQILDLFFDKVIFEIRD 245 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 246 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 302 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D ++ TGE+ A + L ++ S + I L+ + +++ Y+ TL Sbjct: 303 IVGKVAAKDYIDESTGELICAANMELSLDLLAKLSQSGYKRIETLFTNDLDHGPYMSETL 362 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 363 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLMR 422 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 423 DEIEGSGILSKEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 482 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D +MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 483 ERAVKERLSLGDLDMLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 542 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 543 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 602 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 603 RRVRDGIVTDEIHYLSAIEEGNFVIAQANSNLDDEGRFVEDLVTCRSKGESSLFSRDQVD 662 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 663 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 722 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC++Q P V Sbjct: 723 SGVTSVAKRGGMVQYVDASRIVIKVNEDEMFPGEAGIDIYNLTKYTRSNQNTCISQMPCV 782 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FTSI Sbjct: 783 SLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTSI 842 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 843 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 902 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGTV+DV++F R G++K++R++ +E Sbjct: 903 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEM 962 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ ++L ++ + + PR +W Sbjct: 963 QLKQAKKDLTEELQILEAGLFARIHDVLVAGGV-------------EAEKLEKLPRDRWL 1009 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K+ E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 1010 ELGLADEAKQNQLEQLAEQYDELKAEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1069 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1070 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1129 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + DD VLR+AE K Sbjct: 1130 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGDNTRQQVDLNTFSDDEVLRLAENLKK 1189 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+PV+TPVFDGA E I +L + + SGQ LYDG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1190 GLPVATPVFDGAKEREIKGLLELGGIPTSGQITLYDGRTGERFERQVTVGYMYMLKLNHL 1249 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1250 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1309 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1310 NGRTKMYKNIVDGSHQMEPGMPESFNVLLKEIRSLGINIELEDE 1353 >gi|188532314|ref|YP_001906111.1| DNA-directed RNA polymerase subunit beta [Erwinia tasmaniensis Et1/99] gi|226699405|sp|B2VG96|RPOB_ERWT9 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|188027356|emb|CAO95201.1| DNA-directed RNA polymerase beta chain [Erwinia tasmaniensis Et1/99] Length = 1342 Score = 1661 bits (4301), Expect = 0.0, Method: Composition-based stats. Identities = 708/1364 (51%), Positives = 966/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K++Y R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSYTTEQILDLFFEKVIYQIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G +E G+++T+ ++ L++ V + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIES--NGTVYVEKGRRITARHIRQLEKDAVAHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ I A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVVAKDYIDESTGELLIAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIQVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQAN++LD++G F ++LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFVDDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L + ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRINYLLVAGG-------------IEAEKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLSDEDKQNQLEQLAEQYDELKHEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVSKLREFIQRAYDLGTDVRQKVDLNTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLQLGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|123440675|ref|YP_001004668.1| DNA-directed RNA polymerase subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|158512670|sp|A1JII0|RPOB_YERE8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|122087636|emb|CAL10418.1| DNA-directed RNA polymerase beta chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 1342 Score = 1661 bits (4301), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTAQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ G+ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ + + I L+ + ++++AYI TL Sbjct: 292 IAGKVVAKDYIDENTGELICAANMELSLDLLAKLSQAGHKQIETLFTNDLDHSAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LDEDG F E+LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + +D +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEADKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + + +S + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDSVCQKVDLSTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|238798663|ref|ZP_04642137.1| DNA-directed RNA polymerase subunit beta [Yersinia mollaretii ATCC 43969] gi|238717481|gb|EEQ09323.1| DNA-directed RNA polymerase subunit beta [Yersinia mollaretii ATCC 43969] Length = 1342 Score = 1660 bits (4300), Expect = 0.0, Method: Composition-based stats. Identities = 716/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTTQILDLFFDKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ G+ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYIDENTGELICAANMELSLDLLAKLSQSGHKHIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LDEDG F E+LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + +D +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEADKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + +S + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|253686611|ref|YP_003015801.1| DNA-directed RNA polymerase, beta subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494188|sp|C6DHR5|RPOB_PECCP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|251753189|gb|ACT11265.1| DNA-directed RNA polymerase, beta subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1342 Score = 1660 bits (4300), Expect = 0.0, Method: Composition-based stats. Identities = 710/1364 (52%), Positives = 973/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIKSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L ALG +E+IL F+ KIVY G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKIVYEING 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ IE G+++T+ ++ L++ G++ + + + Sbjct: 235 NKLQMDLVPERL-RGETASFDIE--ANGKVYIEKGRRITARHIRQLEKDGIERIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +++D ++ TGE+ A + L ++ S + I L+ + +++ AY+ T+ Sbjct: 292 IAGKVLSKDYIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPSNDRLSALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V D VT+++ YLSA+EE N IAQAN++LDE+G F +ELV CR GE L R++++ Sbjct: 592 RRVRDNVVTDEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVE 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVIR + ++ P +G+DIY L K+ RSNQNTC++Q P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L +D + + PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGGV-------------EADKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ ++ + + +S + D+ V+R+AE K Sbjct: 1119 MAAKGIGEKINAMLKQHEEVTKLREFIQRAYDLGDDVRQKVDLSTFSDEEVMRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L+M + SGQ LYDG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEKEIKELLQMGGIPTSGQITLYDGRTGEKFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|238756060|ref|ZP_04617383.1| DNA-directed RNA polymerase subunit beta [Yersinia ruckeri ATCC 29473] gi|238705727|gb|EEP98121.1| DNA-directed RNA polymerase subunit beta [Yersinia ruckeri ATCC 29473] Length = 1342 Score = 1660 bits (4300), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSFTTAQILDLFFDKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ GV + + + Sbjct: 235 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGVDSIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ + + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYIDENTGELICAANMELSLDLLAKLSQAGHKRIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LDEDG F E+LV CR GE L R+++D Sbjct: 592 RRVRDGLVTDEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + +D +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEADKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + +S + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|291613229|ref|YP_003523386.1| DNA-directed RNA polymerase subunit beta [Sideroxydans lithotrophicus ES-1] gi|291583341|gb|ADE10999.1| DNA-directed RNA polymerase, beta subunit [Sideroxydans lithotrophicus ES-1] Length = 1356 Score = 1660 bits (4300), Expect = 0.0, Method: Composition-based stats. Identities = 706/1363 (51%), Positives = 960/1363 (70%), Gaps = 8/1363 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL +AP++R NEGLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRVGALPVPFLLSTQLESYSDFLQAWVAPEQRKNEGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + + A L+FVSY P FDV +C R LTYA PL+ +RL + D ++ Sbjct: 61 FPIESHTKFARLDFVSYTLGMPPFDVRECQQRGLTYASPLRARVRLTILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTNTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD ++ RIDRRRK+PVT L +LG E+IL F+ + Sbjct: 179 RVIPYRGSWLDFEFDAKDYVYFRIDRRRKMPVTILLKSLGYTPEQILQMFFQFDTFHFGK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 F + L G + + G+ ++ K++T ++ ++E G+ L + +D Sbjct: 239 KGIQFEVVPERL-RGEIARFDI-EGKGGKLIVAKDKRITVRHIREMQEAGIDKLTVGTDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A +IV+ ++GEI A D I E L+++ + I I LY + ++ +I TL Sbjct: 297 LVGRVLAHNIVDKDSGEIIANANDEITETLLDKLEAAGIAKINTLYTNDLDQGGFISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D+ A + IYR+MRPG+ T E++FN LFF+ D+YDLS VGR+K N R+ Sbjct: 357 RTDETTDQWTARVAIYRMMRPGEPPTEDAVEALFNGLFFNEDRYDLSAVGRMKFNRRVGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDI+ +I+ILV+LRNG+G IDDID+LGNRRVR+VGE+ +NQ+R GL R+ Sbjct: 417 EELTGAVTLSNEDIVEVIRILVELRNGRGEIDDIDHLGNRRVRAVGELAENQFRTGLARV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + D++MP DLINAKP+ +AV EFF SSQLSQ + N L+ +TH RR+S Sbjct: 477 ERAVKERLGQAEADNLMPHDLINAKPISAAVKEFFGSSQLSQFMDQTNPLAEVTHKRRIS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGFIETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNEYGFIETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V + T+DV YLSA+EE IAQAN+ LD+ G FT ++V R E +L +K++ Sbjct: 597 RRVVKSRATDDVDYLSAIEEGKFTIAQANAELDKKGHFTNDIVSARQHNEFVLAEPDKLE 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP+L+AE VGTG+E VA Sbjct: 657 YMDVAPAQVVSVAASLIPFLEHDDANRALMGANMQRQAVPVLRAEKALVGTGIERTVAVD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG A+ A R G V+ VD+ RIV+R + + GVDIY L K+ RSNQNT +NQRPLV Sbjct: 717 SGTAVQAWRGGRVDYVDSGRIVVRVNDDETTAGEVGVDIYNLTKYTRSNQNTNINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +VGD + R D++ADG STD+G+LALG+NM++AFMPW+GYNFEDS+LISER+V+ED FTSI Sbjct: 777 RVGDVIARGDVVADGASTDMGELALGQNMMIAFMPWNGYNFEDSILISERVVAEDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE VMARDTKLG EEITRDIPN+SE + +DECGI+ +GAEV GD+LVGK+TPKG Sbjct: 837 HIEELTVMARDTKLGTEEITRDIPNLSEAQMARLDECGIVHIGAEVGVGDVLVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRV +G+SGTV+DV++F R G+ +++R+ + + Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVKAGISGTVIDVQVFTREGLQRDKRAQQIIDD 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ +D D+ I++ ++++RL ++L + A GPK K T L+ + + QW+ Sbjct: 957 ELSRYKKDLADQMRIVEADLFARLEKLLHNKVANGGPKKLAKGTKLNKEYLHSIEHHQWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 V D++V +E +K + + F+ K +K+ GD++ GV ++VKV+VA+KR Sbjct: 1017 DIRVADDEVAAQMEQVKEALAQKRVEFDAAFELKKKKLTQGDELQAGVQKMVKVYVAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VSRI+P EDMP + DGTPV++VLNPLGVPSRMN+GQ+ E HLG Sbjct: 1077 RLQPGDKMAGRHGNKGVVSRIVPVEDMPRMADGTPVEVVLNPLGVPSRMNIGQVLEVHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLGKKI ++ +A I+ +R FL K+ G ++I+ + D+ V+ + K+ Sbjct: 1137 WAAKGLGKKINQML---EAEAKIADVRKFLGKIY-KGDQADEIATFTDEEVVELCRNLKA 1192 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP +TPVFDGA EE I +L +ADL SGQ LYDG TG+ FDR VTVGY+++LKL+H+ Sbjct: 1193 GVPFATPVFDGASEEEIKDLLELADLPRSGQIQLYDGRTGDAFDRKVTVGYMHVLKLHHL 1252 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1253 VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1312 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 GRT+VYE+IV G+ + G PESFNVL KE+++LG+ IDLE Sbjct: 1313 NGRTKVYENIVKGDHKIDAGMPESFNVLTKEIRSLGIDIDLER 1355 >gi|238760256|ref|ZP_04621400.1| DNA-directed RNA polymerase subunit beta [Yersinia aldovae ATCC 35236] gi|238701520|gb|EEP94093.1| DNA-directed RNA polymerase subunit beta [Yersinia aldovae ATCC 35236] Length = 1342 Score = 1660 bits (4299), Expect = 0.0, Method: Composition-based stats. Identities = 712/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSFTTAQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ G+ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYIDTNTGELICAANMELSLDLLAKLSQSGHKHIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDDEGRFLEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + +D +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEADKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + +S + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|162420540|ref|YP_001607196.1| DNA-directed RNA polymerase subunit beta [Yersinia pestis Angola] gi|226699465|sp|A9R0H8|RPOB_YERPG RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|162353355|gb|ABX87303.1| DNA-directed RNA polymerase, beta subunit [Yersinia pestis Angola] Length = 1342 Score = 1660 bits (4299), Expect = 0.0, Method: Composition-based stats. Identities = 712/1364 (52%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGPWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTAQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ G+ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D V+ TGE+ A + L ++ + + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYVDASTGELICAANMELSLDLLAKLSQAGHKQIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L RE++D Sbjct: 592 RRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDDEGRFLEDLVTCRSKGESSLFSREQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMHPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + ++ +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEAEKLSKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + +S + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|269137533|ref|YP_003294233.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Edwardsiella tarda EIB202] gi|267983193|gb|ACY83022.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Edwardsiella tarda EIB202] gi|304557607|gb|ADM40271.1| DNA-directed RNA polymerase beta subunit [Edwardsiella tarda FL6-60] Length = 1342 Score = 1660 bits (4299), Expect = 0.0, Method: Composition-based stats. Identities = 708/1364 (51%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDFTTEQILDLFFDKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ VK + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D ++ TGE+ A + L ++ S + I L+ + +++ Y+ TL Sbjct: 292 IVGKVAAKDYIDESTGELICAANMELSLDLLAKLSQSGYKRIETLFTNDLDHGPYMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLMR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D +MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDMLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RRVRDGIVTDEIHYLSAIEEGNFVIAQANSNLDEEGRFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC++Q P V Sbjct: 712 SGVTSVAKRGGMVQYVDASRIVIKVNEDEMFPGEAGIDIYNLTKYTRSNQNTCISQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FTSI Sbjct: 772 SLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTSI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ ++L ++ + + PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHDVLVAGGV-------------EAEKLEKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K+ E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLADEAKQNQLEQLAEQYDELKAEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE K Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQKAYDLGDHTRQQVDLNTFTDEEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+PV+TPVFDGA E I +L + + SGQ LYDG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GLPVATPVFDGAKEREIKGLLELGGIPTSGQITLYDGRTGERFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGSHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|315122745|ref|YP_004063234.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496147|gb|ADR52746.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1382 Score = 1660 bits (4299), Expect = 0.0, Method: Composition-based stats. Identities = 1247/1382 (90%), Positives = 1311/1382 (94%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MAK VVFNGLGR RKFFGK PEIIDIPDLIEVQ+ASYD FLMMN +P+ERPNEGLQAAFK Sbjct: 1 MAKDVVFNGLGRARKFFGKIPEIIDIPDLIEVQRASYDQFLMMNSSPEERPNEGLQAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPITAFSGAAMLEF SYEFD PKFDVDDCL RDLTYA PLKI LRLIVFD+DEFTGAK Sbjct: 61 SVFPITAFSGAAMLEFESYEFDSPKFDVDDCLRRDLTYAAPLKIILRLIVFDIDEFTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQSIYMGD+PLMTKDGTFVI G QRIVVSQLHRSPGI FDHDKGRASLSGKLLY Sbjct: 121 SIKDIKEQSIYMGDVPLMTKDGTFVINGTQRIVVSQLHRSPGILFDHDKGRASLSGKLLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGM+SE+ILSTFY KIVY + Sbjct: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMNSEDILSTFYSKIVYVK 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 +G++WCFPLS ADL+VG+KVSSSL+D+DTGE+VIESGK+ T+ LLK+LKEKGV FLG+TS Sbjct: 241 KGEYWCFPLSCADLIVGSKVSSSLIDVDTGERVIESGKRFTANLLKNLKEKGVGFLGVTS 300 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G YVAEDIVN TGEIY+EAGD IDE +L I I DIP+L+VDS+++NAY+RN Sbjct: 301 DYLYGSYVAEDIVNETTGEIYLEAGDAIDEPTLAAIVSCGIEDIPVLHVDSIDSNAYVRN 360 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLV DKNKD KDALLDIYRVMRPGDV T S AESMFNFLFFD DKYDLS VGRVKMNMRL Sbjct: 361 TLVLDKNKDYKDALLDIYRVMRPGDVPTVSAAESMFNFLFFDPDKYDLSAVGRVKMNMRL 420 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NLD PD VRH+RKED+IAIIKILVDLR+GKG IDDIDNLGNRRVRSVGEMLKNQYRLGLL Sbjct: 421 NLDVPDTVRHVRKEDVIAIIKILVDLRDGKGKIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMERSIKERISSVDIDSVMPQDLINAKPVVSAV EFFCSSQLSQLEEHVNSLSRITHTRR Sbjct: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVREFFCSSQLSQLEEHVNSLSRITHTRR 540 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET Sbjct: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKVCDGKVTN++VYLSA+EEENRYIAQ+N+SL EDGSF EELVFCRCAGEE+LVPRE Sbjct: 601 PYRKVCDGKVTNEIVYLSAIEEENRYIAQSNASLKEDGSFAEELVFCRCAGEEVLVPREN 660 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 I+F+D SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA Sbjct: 661 INFMDTSPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 KSSGAAIVAKRAGIVEQVDAIRIVIR VE DL+PS SGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRVVEEDLNPSASGVDIYRLMKFQRSNQNTCVNQRP 780 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT Sbjct: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG+ICVGAEVNPGDILVGKITP Sbjct: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGVICVGAEVNPGDILVGKITP 900 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KG+SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV+VRIFNRHGIDKNERS+SVE Sbjct: 901 KGDSPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVEVRIFNRHGIDKNERSLSVE 960 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 REQIELLARD+DDEQ ILDRNIYSRL EILC Q A+SGPKGFKKS+VLSSDLIS Y RSQ Sbjct: 961 REQIELLARDRDDEQAILDRNIYSRLKEILCSQTAISGPKGFKKSSVLSSDLISGYQRSQ 1020 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAVQDEKVQRN+ESL+ QYE SKS+LE RFKNKIEKIQWGDDM PGVLRVVKVFVAM Sbjct: 1021 WWQFAVQDEKVQRNIESLRAQYEHSKSVLESRFKNKIEKIQWGDDMSPGVLRVVKVFVAM 1080 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQSGDKMAGRHGNKGIVSRILPCEDMPFL+DGTPVDIVLNPLGVPSRMNVGQIFETH Sbjct: 1081 KRSIQSGDKMAGRHGNKGIVSRILPCEDMPFLEDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWACVGLGKKIKS+INDYKANGDI+PLRSFLEK+IGTG H EKISDYDD SVLR+AEQW Sbjct: 1141 LGWACVGLGKKIKSIINDYKANGDIAPLRSFLEKIIGTGPHAEKISDYDDASVLRLAEQW 1200 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN Sbjct: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 HMVSDKV+ARS GSYSLVTQQPLGGKSNRGGQRLGEMEVWC QAYGAAYVLQEMLTIKSD Sbjct: 1261 HMVSDKVHARSIGSYSLVTQQPLGGKSNRGGQRLGEMEVWCTQAYGAAYVLQEMLTIKSD 1320 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DVVGRT+VYESIV+G+++FETG PESFNVLVKEMQALGLSIDLENSR K++ KMEEIPD Sbjct: 1321 DVVGRTKVYESIVSGDNSFETGIPESFNVLVKEMQALGLSIDLENSRAKSTVKMEEIPDL 1380 Query: 1381 NK 1382 N+ Sbjct: 1381 NE 1382 >gi|300309447|ref|YP_003773539.1| DNA-directed RNA polymerase subunit beta [Herbaspirillum seropedicae SmR1] gi|300072232|gb|ADJ61631.1| DNA-directed RNA polymerase subunit beta protein [Herbaspirillum seropedicae SmR1] Length = 1368 Score = 1660 bits (4298), Expect = 0.0, Method: Composition-based stats. Identities = 703/1374 (51%), Positives = 958/1374 (69%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + ++P L+ Q SY +FL A ER NEGLQ+AF S+ Sbjct: 1 MHYSFTEKKRIRKSFAKRANVHNVPFLLATQIESYQNFLQPERAASERKNEGLQSAFTSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEF+SY P FDV +C R LT+A PL+ +RL++ D + T + Sbjct: 61 FPIVSHNGFARLEFLSYVLGAPPFDVKECQQRGLTFASPLRAKVRLVILDKESPT-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG+LPLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 120 KEMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI+ R+DRRRK+PVT L A+GM SE+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMTSEQILANFFVFDNFNLHA 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + L G + D +G+ ++ K++ + ++ ++ G+K + + D Sbjct: 240 EGADMEFVSERL-RGEVARFDITD-KSGKVMVAKDKRINAKHVRDIEAAGIKHISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ ETGE+ A D + E+ L ++ + I I LY + ++ YI TL Sbjct: 298 LLGRVLAKNIVDPETGEVVASANDELTEELLAKLREANISAIQTLYTNDLDQGGYISQTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD D+ A + IYR+MRPG+ T E++FN LF+ D+YDLS VGR+K N R+ Sbjct: 358 RTDDTADQTAARVAIYRMMRPGEPPTEESVEALFNGLFYSEDRYDLSAVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + +DI+A+IKILV+LRNG+G +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DELTGTMTLSNDDILAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + D++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV KVTN + YLSA+EE IAQAN+++D +G ++ELV R AGE ILV E++ Sbjct: 598 RKVEGSKVTNQIDYLSAIEEGRYVIAQANATIDGEGKLSDELVSAREAGETILVSPERVQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 658 YMDVAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGVVDYVDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD V ++D+IADG STD+G+LALG+NMLVAFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KIGDRVAKHDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLG EEITRDI N++E L +DE GI+ +GAEV GD LVGK+TPKG Sbjct: 838 HIEELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVEAGDTLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T L + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLERLLIGKVANGGPKKLVKGTKLDKAYLDDLDKFHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 D+ + +E++K + + F+ K +K+ GD++PPGV ++VKV++A+KR Sbjct: 1018 DIRPADDDIANALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VSRILP EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG ++ ++ +A ++ LR FL + E++ + D+ ++ + E K Sbjct: 1138 WAAKGLGLRLGEMV---QAQAKVAELRKFLTTIYNESGKQEELDSFTDEEIIELVENLKK 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQ----------SILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE ML +A D + +YDG TGE F+R VTVG Sbjct: 1195 GVPFATPVFDGAHEEETRRMLDLAYPDPIAKQLGMTPSKNQVTMYDGRTGEAFERTVTVG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDLE Sbjct: 1315 EMLTVKSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERE 1368 >gi|329296849|ref|ZP_08254185.1| DNA-directed RNA polymerase subunit beta [Plautia stali symbiont] Length = 1342 Score = 1659 bits (4297), Expect = 0.0, Method: Composition-based stats. Identities = 707/1364 (51%), Positives = 969/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL+++ + G ++ Sbjct: 57 FPIASYSGNSELQYVSYRLGEPVFDVTECQIRGVTYSAPLRVKLRLVIYVREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALDYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G +E G+++T+ ++ L++ ++ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGTVYVEKGRRITARHIRQLEKDNIQHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ + A + L ++ S + I L+ + +++ +YI TL Sbjct: 292 IAGKVVAKDYIDLNTGELIVPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGSYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEERYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RA E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERASFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DGKV++++ YLSA+EE N IAQAN++L +DGSF ++LV CR GE L R+++D Sbjct: 592 RRVVDGKVSDEIHYLSAIEEGNYVIAQANTNLADDGSFVDDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIQAVLISGGV-------------EAEKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 Q + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 QLGLTDEEKQNALEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + T ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQRAYDLGTDVRQTVDLNTFSDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLQLGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|268592961|ref|ZP_06127182.1| DNA-directed RNA polymerase, beta subunit [Providencia rettgeri DSM 1131] gi|291311432|gb|EFE51885.1| DNA-directed RNA polymerase, beta subunit [Providencia rettgeri DSM 1131] Length = 1342 Score = 1659 bits (4296), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PDGQNGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L++VSY P FDV +C R +TY+ PL++ LRLIV++ + G ++ Sbjct: 57 FPIQSYSGNAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLIVYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L A+ ++EEIL+ F+ K V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMDYNTEEILNLFFEKTVFQIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L+++ V + + + Sbjct: 235 NKLMMTLVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKEEVNSIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA D ++ TGE+ A + L + S + I L+ + +++ AYI T+ Sbjct: 292 IAGKVVARDYIDESTGELICAANMELSLDMLARLSQSGHKTIETLFTNDLDHGAYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ LFF D+YDLS VGR+K N LN Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFDNLFFSEDRYDLSAVGRMKFNRSLNR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + +EDII +++ L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSEEDIIDVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDALMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ YLSA+EE N IAQAN+ L +DGSF EEL+ CR GE L RE+++ Sbjct: 592 RLVRDGLVTDEIHYLSAIEEGNFIIAQANTVLGDDGSFVEELITCRNKGESSLFSREQVE 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VA+R G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC++Q P V Sbjct: 712 SGVTAVARRGGSVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEET 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + +++R+ +L + ++ + + PR +W Sbjct: 952 QLRDAKKDLTEELRIFEAGLFARIRSVLVNGG-------------IEAEKLDKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++ DE+ Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELSLADEEKQNQLEQLAEQYDELKSEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPVEDMPYDENGNPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + D+ V+R+AE K Sbjct: 1119 MAAKGIGEKINAMLKQQEEVAKLREFIQKAYDLGDDPRQKVDLNTFTDEEVMRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEKEIKELLKLGGLPTSGQITLFDGRTGERFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGSHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|258543814|ref|ZP_05704048.1| DNA-directed RNA polymerase subunit beta [Cardiobacterium hominis ATCC 15826] gi|258520943|gb|EEV89802.1| DNA-directed RNA polymerase subunit beta [Cardiobacterium hominis ATCC 15826] Length = 1357 Score = 1659 bits (4296), Expect = 0.0, Method: Composition-based stats. Identities = 701/1364 (51%), Positives = 966/1364 (70%), Gaps = 7/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K+P ++D P L+ +Q SY FL I D+R + GL AF S+ Sbjct: 1 MTYTFTEKKRIRKNFSKHPTVLDTPYLLSMQLDSYRDFLQKGIPSDKRADIGLHEAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V YE P+FDV +C R +TYA PL++ +RL ++D K Sbjct: 61 FPIESHNGLVELQYVGYELGRPEFDVRECQLRGVTYASPLRVRMRLAIYDKGNHDKRKLK 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 + I+ + ++MG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG SGKLL++ Sbjct: 121 QIIESEPVFMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGVGHSSGKLLFSA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD+++ RIDRRRK+PVT L ALG EIL F+ + Sbjct: 181 RVIPYRGSWLDFEFDAKDLLYCRIDRRRKLPVTVLLHALGYTDAEILGEFFETQTFKISK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + A G V+ ++ GE ++E+GK++TS ++ L+EK V + D Sbjct: 241 NKLEMKFQPA-QFKGEAVAFDIM--ADGEVLVEAGKRITSRHVRQLEEKNVTSQVVPMDF 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A+D+++ E+GE+ ++A V+ E+ + + ++ LYV+ ++ AYI +TL Sbjct: 298 VVGKILAKDLIDKESGELVLQANTVLTEEHIVKFIELGVKTFETLYVNELDRGAYIADTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D++ D+ +A +IYR+MRPG+ T A+ +F LFF+ ++YDLS VGR+K N RL + Sbjct: 358 RADESTDQDNARAEIYRMMRPGEPPTKDAADGLFENLFFNEERYDLSRVGRMKFNRRLGI 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + +EDI+ ++K L+ +++G GT+DDID+LGNRR+R VGEM N +R+GL+R+ Sbjct: 418 EEKEGSGVLSREDIVRVLKTLIAIKDGDGTVDDIDHLGNRRIRCVGEMAANAFRIGLVRL 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ERSIKER+S V+ + + P+DLIN KPV +A+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 478 ERSIKERLSQVESEQLTPKDLINQKPVSAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A+ N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLAVYAKTNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT + YLSA+EE IAQAN++L+EDG+F ++LV R E +L ++ID Sbjct: 598 RKVVDGKVTMETEYLSAIEESKYVIAQANAALNEDGTFRDDLVSARYENEFMLARADRID 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VVA Sbjct: 658 YMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERVVASD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A+R G+++ VD+ RIV++ + ++ P GVDIY L K+ RSNQNTC+NQ+PLV Sbjct: 718 SGVLVRAERGGVIDLVDSSRIVVKVNDDEVQPGGLGVDIYNLTKYTRSNQNTCINQKPLV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V R D++ADGPSTDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V ED FT+I Sbjct: 778 KPGDVVARGDVLADGPSTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVQEDRFTTI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE +ARDTKLG EEI+ DIPNV E L +D GI+ +GAEV GDILVGK+TPKG Sbjct: 838 HIEELTCVARDTKLGSEEISSDIPNVKESALAKLDGTGIVHIGAEVKAGDILVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E +PEEKLLRAIFGEKA DV+D+SLRVP+G+ GTVVDVR++ R G++K+ R+ +E Sbjct: 898 ERSQSPEEKLLRAIFGEKASDVKDSSLRVPTGMDGTVVDVRVYTRDGVEKDARAKEIEAM 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE +A++ D+ + + +I+ R+ +L GQ PK K ++ L++E QW+ Sbjct: 958 EIESIAKNIKDQLRVFESDIHERVARLLLGQAVKKAPK-RKSGDLVDQALLNELKPEQWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 +Q+ + ++ + + L+D ++ K K GDD+ PGVL++VKV++A+KR Sbjct: 1017 DLRLQEADINEQLDGMHQLLLDKRRELQDYYEEKKAKFAQGDDLAPGVLKMVKVYLAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VSRI+P EDMP+++DGTPVDI LNPLGVPSRMN+GQ+ ETHLG Sbjct: 1077 RLQPGDKMAGRHGNKGVVSRIVPVEDMPYMEDGTPVDICLNPLGVPSRMNIGQVLETHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA G+G +I +++ N LR +L +V S E + DD + + + ++ Sbjct: 1137 WAARGIGLRIGEMLDQ---NEKPRKLRDYLNEVYNHDSQREALDSLDDGDFVALCQNLRA 1193 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TPVFDGA E + ML +A L +SGQ+ LYDG TGEPFDR VTVGY+YMLKLNH+ Sbjct: 1194 GVPMATPVFDGAKEAEVQRMLELAGLPKSGQTRLYDGRTGEPFDRDVTVGYMYMLKLNHL 1253 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGG++ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1254 VDDKMHARSTGPYSLVTQQPLGGRAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1313 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN + G PESFNVL KE++AL ++IDLE Sbjct: 1314 EGRTKMYKNIVDGNLQIDPGMPESFNVLTKEIKALAINIDLEQE 1357 >gi|238918142|ref|YP_002931656.1| DNA-directed RNA polymerase subunit beta [Edwardsiella ictaluri 93-146] gi|259494182|sp|C5BHE3|RPOB_EDWI9 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|238867710|gb|ACR67421.1| DNA-directed RNA polymerase, beta subunit, putative [Edwardsiella ictaluri 93-146] Length = 1342 Score = 1659 bits (4296), Expect = 0.0, Method: Composition-based stats. Identities = 707/1364 (51%), Positives = 966/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDFTTEQILDLFFDKVIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ V + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVTLIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D ++ TGE+ A + L ++ S + I L+ + +++ Y+ TL Sbjct: 292 IVGKVAAKDYIDESTGELICAANMELSLDLLAKLSQSGYKRIDTLFTNDLDHGPYMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLMR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKNDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D +MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDMLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RRVRDGIVTDEIHYLSAIEEGNFVIAQANSNLDDEGRFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC++Q P V Sbjct: 712 SGVTSVAKRGGMVQYVDASRIVIKVNEDEMFPGEAGIDIYNLTKYTRSNQNTCISQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FTSI Sbjct: 772 SLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTSI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ ++L ++ + + PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHDVLVAGGV-------------EAEKLEKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K+ E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLADEAKQNQLEQLAEQYDELKAEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGDNTRQQVDLNTFSDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+PV+TPVFDGA E I +L + + SGQ LYDG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GLPVATPVFDGAKEREIKGLLELGGIPTSGQITLYDGRTGERFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGSHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|83719958|ref|YP_443580.1| DNA-directed RNA polymerase subunit beta [Burkholderia thailandensis E264] gi|167582630|ref|ZP_02375504.1| DNA-directed RNA polymerase subunit beta [Burkholderia thailandensis TXDOH] gi|167620744|ref|ZP_02389375.1| DNA-directed RNA polymerase subunit beta [Burkholderia thailandensis Bt4] gi|115305560|sp|Q2SU19|RPOB_BURTA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|83653783|gb|ABC37846.1| DNA-directed RNA polymerase, beta subunit [Burkholderia thailandensis E264] Length = 1368 Score = 1659 bits (4295), Expect = 0.0, Method: Composition-based stats. Identities = 698/1375 (50%), Positives = 964/1375 (70%), Gaps = 18/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q S+ FL ++ P +R +EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRSIVHQVPFLLATQLESFSTFLQADVLPAQRKSEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ K++ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-REGKVIVQKDKRINAKHIRDLEAAKTKYISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E L+++ ++I++I LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITEGVLDKLREAKIKEIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RVDETVDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++ DGS +ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYMIAQANAAISNDGSLVDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TSI Sbjct: 778 KMGDKVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ I LR FL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---ARQTKIEELRVFLTKIYNESGRAEDLESFSDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDES-----------GQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE ++ ML +A + Q LYDG TGEPF+R VTV Sbjct: 1195 GVPFATPVFDGATEEEMSKMLDLA-FPDDIAEQLDMNPSKNQVRLYDGRTGEPFERRVTV 1253 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1254 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1313 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1314 QEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|300725143|ref|YP_003714471.1| RNA polymerase subunit beta [Xenorhabdus nematophila ATCC 19061] gi|297631688|emb|CBJ92401.1| RNA polymerase, beta subunit [Xenorhabdus nematophila ATCC 19061] Length = 1342 Score = 1659 bits (4295), Expect = 0.0, Method: Composition-based stats. Identities = 708/1364 (51%), Positives = 967/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQNGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG++ L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGSSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L A+ +E+IL+ F+ K V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRAMDYTAEDILNLFFNKTVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ V + + + Sbjct: 235 NKLQMTLVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDQVDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGEI A + L + S + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYIDQNTGEIICAANMELSLDLLARLSQSGHKSIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L+ Sbjct: 352 RIDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLDR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + KEDII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 NEVEGCGILSKEDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ YLSA+EE N IAQAN+ LDE+G F EELV CR E L R+++ Sbjct: 592 RLVRDGVVTDEIHYLSAIEEGNYVIAQANTVLDEEGHFVEELVTCRHYDESSLFNRDQVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGVVQYVDASRIVIKVNEDEMYAGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGELVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + +++R+ +L + ++ +S+ PR++W Sbjct: 952 QLRQAKKDLTEELQIFEAGLFARIYSVLVSGG-------------IEAEKLSKLPRARWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K+ E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLADEEKQNQLEQLAEQYDELKAEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ V+R+AE K Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQKAYDLGDDTRQKVDLNTFTDEEVMRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKETEIKELLKLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|270265424|ref|ZP_06193683.1| hypothetical protein SOD_o00070 [Serratia odorifera 4Rx13] gi|270040617|gb|EFA13722.1| hypothetical protein SOD_o00070 [Serratia odorifera 4Rx13] Length = 1342 Score = 1658 bits (4294), Expect = 0.0, Method: Composition-based stats. Identities = 715/1364 (52%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQFTTEQILDLFFAKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ IE G+++T+ ++ L++ ++ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKIYIEKGRRITARHIRQLEKDEIQSIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYIDTNTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD+DG F E+LV CR GE L R+++D Sbjct: 592 RRVRDGLVTDEINYLSAIEEGNFVIAQANSNLDDDGRFEEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIVI+ E ++ +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVIQYVDASRIVIKVNEDEMLAGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G+DK++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVDKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L ++ +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVAGGV-------------EAEKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKSDFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI ++ ++ + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINQMLKQHQEVAKLREFIQKAYDLGDNVCQKVDLNTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L M + SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKQLLEMGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|291615768|ref|YP_003518510.1| RpoB [Pantoea ananatis LMG 20103] gi|291150798|gb|ADD75382.1| RpoB [Pantoea ananatis LMG 20103] gi|327396034|dbj|BAK13456.1| DNA-directed RNA polymerase beta chain RpoB [Pantoea ananatis AJ13355] Length = 1342 Score = 1658 bits (4293), Expect = 0.0, Method: Composition-based stats. Identities = 710/1364 (52%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIASYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L AL + +IL F+ K+VY R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALHYTTAQILDVFFEKVVYEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G +E G+++T+ ++ L++ G++ + + + Sbjct: 235 NKLQMELVPERL-RGETATFDIES--NGTVYVEKGRRITARHIRQLEKDGIQHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V++D ++ TGE+ + A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVSKDYIDENTGELIVAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG V++++ YLSA+EE N IAQAN++L E+G+F ++LV CR GE L R+++D Sbjct: 592 RRVIDGVVSDEIHYLSAIEEGNYVIAQANTNLSEEGAFVDDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++SR+ +L +D + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFSRIQSVLISGGV-------------EADKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEAKQNQLEQLAEQYDELKHEFEKKLEGKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQRAYDLGTDVRQKVDLNTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L + L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLELGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|227115007|ref|ZP_03828663.1| DNA-directed RNA polymerase subunit beta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 1342 Score = 1658 bits (4293), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIKSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L ALG +E+IL F+ KIVY G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKIVYEING 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ IE G+++T+ ++ L++ G++ + + + Sbjct: 235 NKLQMDLVPERL-RGETASFDIE--ANGKVYIEKGRRITARHIRQLEKDGIERIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +++D ++ TGE+ A + L ++ S + I L+ + +++ AY+ T+ Sbjct: 292 IAGKVLSKDYIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPSNDRLSALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH R +S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRHIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V D VT+++ YLSA+EE N IAQAN++LDE+G F +ELV CR GE L R++++ Sbjct: 592 RRVRDNVVTDEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVE 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVIR + ++ P +G+DIY L K+ RSNQNTC++Q P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L +D + + PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGGV-------------EADKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ ++ + + +S + D+ V+R+AE K Sbjct: 1119 MAAKGIGEKINAMLKQHEEVTKLREFIQRAYDLGDDVRQKVDLSTFSDEEVMRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L+M + SGQ LYDG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEKEIKELLQMGGIPTSGQITLYDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEEK 1342 >gi|170701420|ref|ZP_02892378.1| DNA-directed RNA polymerase, beta subunit [Burkholderia ambifaria IOP40-10] gi|170133672|gb|EDT02042.1| DNA-directed RNA polymerase, beta subunit [Burkholderia ambifaria IOP40-10] Length = 1368 Score = 1658 bits (4293), Expect = 0.0, Method: Composition-based stats. Identities = 696/1374 (50%), Positives = 964/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL ++ +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVPGTQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D E + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVILDK-ESPNKPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ KF+ + D Sbjct: 240 EGAQLEFVPERL-RGEVARFDITD-RDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D + E LE++ + I++I LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIASANDEVTESVLEKLREAGIKEIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ + YDLS VGR+K N R++ Sbjct: 358 RVDETTDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVSR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++DE+G +ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYMIAQANAAIDENGQLVDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I +R+FL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEEMRAFLTKIYNDSGRKEDLESFTDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMA---------DLDES-GQSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE + ML +A ++ S Q LYDG TGE F+R VT+G Sbjct: 1195 GVPFATPVFDGATEEEMGKMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|289623856|ref|ZP_06456810.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 1336 Score = 1658 bits (4293), Expect = 0.0, Method: Composition-based stats. Identities = 713/1344 (53%), Positives = 978/1344 (72%), Gaps = 9/1344 (0%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 +D+P L+ +Q SY FL D+ + GL AAFKSVFPI ++SG A LE+V Y Sbjct: 1 MDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSVFPIISYSGNAALEYVGYRLGE 60 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 P FDV +C+ R +TYAVPL++ +RLI+FD + K+IKDIKEQ +YMG++PLMT++GT Sbjct: 61 PAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAIKDIKEQEVYMGEIPLMTENGT 118 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 FVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ RIIP +G W+D EFD KD + Sbjct: 119 FVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVF 178 Query: 204 VRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 VRIDRRRK+P + L ALG +E++L FY V+ RG+ L L G Sbjct: 179 VRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRGENLSLELVPQRL-RGEIAVLD 237 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 ++D D G+ ++E G+++T+ + L++ G+K L + D + G A+ IV+ TGEI E Sbjct: 238 ILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDYVLGRTTAKVIVHPATGEIIAE 296 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 ++ + L +I +++ I LY + ++ ++ +TL D ++ +AL++IYR+MRP Sbjct: 297 CNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDSTSNQLEALVEIYRMMRP 356 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKIL 443 G+ T AE++FN LFF ++YDLS VGR+K N R+ + + KEDI+A++K L Sbjct: 357 GEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIEGSGVLCKEDIVAVLKTL 416 Query: 444 VDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL 503 VD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ER++KER+S + + +MPQDL Sbjct: 417 VDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDL 476 Query: 504 INAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHP 563 INAKPV +AV EFF SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHP Sbjct: 477 INAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHP 536 Query: 564 THYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEE 623 THYGR+CP ET EG NIGL++SL ++AR N YGF+E+PYR V +G VT ++V+LSA+EE Sbjct: 537 THYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEGLVTEEIVFLSAIEEA 596 Query: 624 NRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLE 683 + IAQA++++++ +ELV R E + + +D SPKQVVS+AASLIPFLE Sbjct: 597 DHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVTLMDVSPKQVVSVAASLIPFLE 656 Query: 684 NDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRI 743 +DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ SG +VA+R G+++ VDA RI Sbjct: 657 HDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRI 716 Query: 744 VIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLG 803 V+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV GD V+R+DI+ADGPSTD+G Sbjct: 717 VVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDRVQRSDIMADGPSTDMG 776 Query: 804 DLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITR 863 +LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+IHI+E +ARDTKLGPEEIT Sbjct: 777 ELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITA 836 Query: 864 DIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVD 923 DIPNV E L +DE GI+ VGAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA D Sbjct: 837 DIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 896 Query: 924 VRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIY 983 V+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Q++ + +D ++E I++ + Sbjct: 897 VKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDEIRKDLNEEFRIVEGATF 956 Query: 984 SRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYE 1043 RL L G+ A G G KK ++++++ QW++ + ++ + +E + Sbjct: 957 ERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWFKLRMAEDALNEQLEKAQAYIV 1015 Query: 1044 TSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRI 1103 + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R IQ GDKMAGRHGNKG+VS I Sbjct: 1016 DRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVI 1075 Query: 1104 LPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANG 1163 +P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG A GLG+KI ++ + + Sbjct: 1076 MPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMLEEQR--- 1132 Query: 1164 DISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSM 1222 ++ LR FL ++ G E + D D+ +L +A+ ++GVP++TPVFDGA E I +M Sbjct: 1133 KVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLRNGVPMATPVFDGAKESEIKAM 1192 Query: 1223 LRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQP 1282 L++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQP Sbjct: 1193 LKLADMPESGQVQLFDGRTGNKFERAVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1252 Query: 1283 LGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETG 1342 LGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV G+ E G Sbjct: 1253 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPG 1312 Query: 1343 TPESFNVLVKEMQALGLSIDLENS 1366 PESFNVL+KE+++LG+ IDLE Sbjct: 1313 MPESFNVLIKEIRSLGIDIDLETE 1336 >gi|261819566|ref|YP_003257672.1| DNA-directed RNA polymerase subunit beta [Pectobacterium wasabiae WPP163] gi|261603579|gb|ACX86065.1| DNA-directed RNA polymerase, beta subunit [Pectobacterium wasabiae WPP163] Length = 1342 Score = 1658 bits (4293), Expect = 0.0, Method: Composition-based stats. Identities = 708/1364 (51%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIKSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L ALG +E+IL F+ KIVY G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKIVYEING 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ IE G+++T+ ++ L++ ++ + + + Sbjct: 235 NKLQMDLVPERL-RGETASFDIE--ANGKVYIEKGRRITARHIRQLEKDDIERIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +++D ++ TGE+ A + L ++ S + I L+ + +++ AY+ T+ Sbjct: 292 IAGKVLSKDYIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPSSDRLSALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V + VT+++ YLSA+EE N IAQAN++LDE+G F +ELV CR GE L R++++ Sbjct: 592 RRVRENVVTDEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVE 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVIR + ++ P +G+DIY L K+ RSNQNTC++Q P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++ R+ +L +D + + PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFGRIHAVLVSGGV-------------EADKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ ++ + + +S + D+ V+R+AE K Sbjct: 1119 MAAKGIGEKINAMLKQHEEVTKLREFIQRAYDLGDDVRQKVDLSTFSDEEVMRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L+M + SGQ LYDG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEKEIKELLQMGGIPTSGQITLYDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEEK 1342 >gi|325529729|gb|EGD06586.1| DNA-directed RNA polymerase subunit beta [Burkholderia sp. TJI49] Length = 1368 Score = 1658 bits (4293), Expect = 0.0, Method: Composition-based stats. Identities = 700/1374 (50%), Positives = 965/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL + +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQAEVPATQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D E + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVILDK-ESPNKPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ G Sbjct: 180 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMG 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ KF+ + D Sbjct: 240 EGAQLEFVPERL-RGEVARFDITD-RDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+GETGE+ A D + E LE++ ++I++I LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGETGEVIASANDEVTESVLEKLREADIKEIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ + YDLS VGR+K N R+ Sbjct: 358 RVDETTDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+ + YLSA+EE IAQAN+++DE+G +ELV R AGE ++V ++I Sbjct: 598 RKVVDGKVTDQIDYLSAIEEGRYMIAQANAAIDENGMLVDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAYRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I LR+FL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEELRAFLTKIYNESGRQEDLESFTDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMA---------DLDES-GQSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE + ML +A ++ S Q LYDG TGE F+R VT+G Sbjct: 1195 GVPFATPVFDGATEEEMGKMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|172059333|ref|YP_001806985.1| DNA-directed RNA polymerase subunit beta [Burkholderia ambifaria MC40-6] gi|226699378|sp|B1YRC2|RPOB_BURA4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|171991850|gb|ACB62769.1| DNA-directed RNA polymerase, beta subunit [Burkholderia ambifaria MC40-6] Length = 1368 Score = 1657 bits (4292), Expect = 0.0, Method: Composition-based stats. Identities = 696/1374 (50%), Positives = 963/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL ++ +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVPGTQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D E + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVILDK-ESPNKPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ KF+ + D Sbjct: 240 EGAQLEFVPERL-RGEVARFDITD-RDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D + E LE++ + I++I LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIASANDEVTESVLEKLREAGIKEIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ + YDLS VGR+K N R+ Sbjct: 358 RVDETTDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++DE+G +ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYMIAQANAAIDENGQLVDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I +R+FL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEEMRAFLTKIYNDSGRKEDLESFTDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMA---------DLDES-GQSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE + ML +A ++ S Q LYDG TGE F+R VT+G Sbjct: 1195 GVPFATPVFDGATEEEMGKMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|254697596|ref|ZP_05159424.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 2 str. 86/8/59] Length = 1301 Score = 1657 bits (4292), Expect = 0.0, Method: Composition-based stats. Identities = 892/1300 (68%), Positives = 1078/1300 (82%), Gaps = 2/1300 (0%) Query: 77 VSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLP 136 V YEFDPPKFDVD+C RDLTY+ PLK+TLRLIVFD+DE TGAKSIKDIKEQ +YMGD+P Sbjct: 1 VRYEFDPPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAKSIKDIKEQDVYMGDMP 60 Query: 137 LMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEF 196 LMT +GTF++ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+A R+IP +G W+DIEF Sbjct: 61 LMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPYRGSWLDIEF 120 Query: 197 DSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMV 256 DSKDI++ RIDRRRK+P T+ LMALGMD EEILSTFY + Y++ GD W P SA Sbjct: 121 DSKDIVYARIDRRRKLPATTLLMALGMDGEEILSTFYKTVTYTRDGDNWRIPYSAE-RFK 179 Query: 257 GAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGE 316 G K+ S LVD DTGE V+E+GKKLT+ K L EKG+K + T D L G Y+AED+VN Sbjct: 180 GMKIISDLVDADTGEVVLEAGKKLTARAAKQLAEKGLKAIKATEDDLFGSYLAEDVVNYA 239 Query: 317 TGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLD 376 TGEIY+EAGD IDEK L+ + + +I +L +D VN AYIRNTL DKN+ R++AL D Sbjct: 240 TGEIYLEAGDEIDEKVLKTLIDTGETEIDVLDIDHVNIGAYIRNTLAVDKNESRQEALFD 299 Query: 377 IYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDI 436 IYRVMRPG+ T AE+MF+ LFFDS++YDLS VGRVKMNMRL+LD D VR +RKEDI Sbjct: 300 IYRVMRPGEPPTMDSAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLDAEDTVRVLRKEDI 359 Query: 437 IAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDID 496 +A++K+LV+LR+G+G IDDIDNLGNRRVRSVGE+++NQYR+GLLRMER+IKER+SS++ID Sbjct: 360 LAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSIEID 419 Query: 497 SVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGV 556 +VMPQDLINAKP +AV EFF SSQLSQ + N LS ITH RRLSALG GG+ R RAG Sbjct: 420 TVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGF 479 Query: 557 EMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVY 616 E+RDVHPTHYGRICP ET EG NIGL++SL +FARVN YGFIE+PYRKV DGKVTNDVVY Sbjct: 480 EVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVVDGKVTNDVVY 539 Query: 617 LSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAA 676 LSAMEE +AQAN LDE G F +E V CR AGE ++ PRE +D +D SPKQ+VS+AA Sbjct: 540 LSAMEEAKHSVAQANVELDEQGGFVDEFVICRHAGEVMMAPRENVDLMDVSPKQLVSVAA 599 Query: 677 SLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 +LIPFLENDD+NR LMG NMQRQAVPL++AEAPFVGTGME +VA+ SGAAI A+R GIV+ Sbjct: 600 ALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARDSGAAIAARRGGIVD 659 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 QVDA RIVIR+ E LDPS SGVDIYRL KFQRSNQ+TC+NQRPLV+VGD + + DIIAD Sbjct: 660 QVDATRIVIRATEE-LDPSKSGVDIYRLQKFQRSNQSTCINQRPLVRVGDRIHKGDIIAD 718 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 GPSTDLGDLALGRN+LVAFMPW+GYN+EDS+L+SE++VS+DVFTSIHIEEFEV ARDTKL Sbjct: 719 GPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSIHIEEFEVAARDTKL 778 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 GPEEITRDIPNVSEE LKN+DE GI+ +GAEV+PGDILVGKITPKGESPMTPEEKLLRAI Sbjct: 779 GPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGESPMTPEEKLLRAI 838 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 FGEKA DVRDTS+R+P G GTVV+VR+FNRHG++K+ER++++ERE+IE LA+D+DDEQ Sbjct: 839 FGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQA 898 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 ILDRN+Y RL +++ G+ A +GPKGFKK T ++ +L++EYPRSQWWQFAV+DEK+Q +E Sbjct: 899 ILDRNVYGRLADMIDGKVAAAGPKGFKKGTTITRELMTEYPRSQWWQFAVEDEKLQGELE 958 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 +L+ QY+ SK +LE RF +K+EK+Q GD+MPPGV+++VKVFVA+KR IQ GDKMAGRHGN Sbjct: 959 ALRSQYDDSKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPGDKMAGRHGN 1018 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG+VSRILP EDMPFL+DGT DIVLNPLGVPSRMNVGQI ETHLGWAC G+GKKI L+ Sbjct: 1019 KGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAGMGKKIGELL 1078 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 + Y+ +I PLR LE + E + YDDD++L +A Q K GV ++TPVFDGA E Sbjct: 1079 DVYRKTANIEPLRQTLEHIYPDNDRNEPVRSYDDDAILMLANQVKRGVSIATPVFDGAVE 1138 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 IN+ML A L SGQS LYDG TGEPFDR VT+GYIYMLKL+H+V DK++ARS G YS Sbjct: 1139 ADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLHHLVDDKIHARSIGPYS 1198 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 LVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV G+ Sbjct: 1199 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGD 1258 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 DTFE G PESFNVLVKEM++LGL+++L+++R + + Sbjct: 1259 DTFEAGIPESFNVLVKEMRSLGLNVELDDTREAEQPALPD 1298 >gi|121600456|ref|YP_994465.1| DNA-directed RNA polymerase subunit beta [Burkholderia mallei SAVP1] gi|167003564|ref|ZP_02269350.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei PRL-20] gi|166229288|sp|A1V8B2|RPOB_BURMS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|121229266|gb|ABM51784.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei SAVP1] gi|243060924|gb|EES43110.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei PRL-20] Length = 1368 Score = 1657 bits (4292), Expect = 0.0, Method: Composition-based stats. Identities = 697/1375 (50%), Positives = 965/1375 (70%), Gaps = 18/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q S+ FL ++ +R +EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRSIVHQVPFLLATQLESFSTFLQADVPTAQRKSEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D + + + + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKS-VV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ K++ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-REGKVIVQKDKRINAKHIRDLEAAKTKYISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E LE++ ++I++I LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITEGVLEKLREAKIKEIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RVDETVDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++ +DG+ +ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYMIAQANAAIGDDGALVDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAVQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ I LR FL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---ARQTKIEELRVFLTKIYNESGRAEDLESFSDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDES-----------GQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE ++ ML +A + Q LYDG TGEPF+R VTV Sbjct: 1195 GVPFATPVFDGATEEEMSKMLDLA-FPDDIAEQLDMNPSKNQVRLYDGRTGEPFERRVTV 1253 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1254 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1313 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1314 QEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|107024311|ref|YP_622638.1| DNA-directed RNA polymerase subunit beta [Burkholderia cenocepacia AU 1054] gi|116688364|ref|YP_833987.1| DNA-directed RNA polymerase subunit beta [Burkholderia cenocepacia HI2424] gi|170731674|ref|YP_001763621.1| DNA-directed RNA polymerase subunit beta [Burkholderia cenocepacia MC0-3] gi|123244305|sp|Q1BRU0|RPOB_BURCA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158512275|sp|A0K3L7|RPOB_BURCH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699379|sp|B1JU14|RPOB_BURCC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|105894500|gb|ABF77665.1| DNA-directed RNA polymerase subunit beta [Burkholderia cenocepacia AU 1054] gi|116646453|gb|ABK07094.1| DNA-directed RNA polymerase subunit beta [Burkholderia cenocepacia HI2424] gi|169814916|gb|ACA89499.1| DNA-directed RNA polymerase, beta subunit [Burkholderia cenocepacia MC0-3] Length = 1368 Score = 1657 bits (4292), Expect = 0.0, Method: Composition-based stats. Identities = 698/1374 (50%), Positives = 963/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL ++ +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVPATQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D E + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVILDK-ESPNKPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ KF+ + D Sbjct: 240 EGAQLEFVPERL-RGEVARFDITD-RDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D + E LE++ + I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIASANDEVTESVLEKLREAGIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ + YDLS VGR+K N R+ Sbjct: 358 RVDETTDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++DE+G +ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYMIAQANAAIDENGQLIDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I LR+FL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEELRTFLTKIYNESGRQEDLESFTDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMA---------DLDES-GQSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE + ML +A ++ S Q LYDG TGE F+R VT+G Sbjct: 1195 GVPFATPVFDGATEEEMGKMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|317046444|ref|YP_004114092.1| DNA-directed RNA polymerase subunit beta [Pantoea sp. At-9b] gi|316948061|gb|ADU67536.1| DNA-directed RNA polymerase, beta subunit [Pantoea sp. At-9b] Length = 1342 Score = 1657 bits (4292), Expect = 0.0, Method: Composition-based stats. Identities = 707/1364 (51%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIASYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALHYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G +E G+++T+ ++ L++ ++ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGTVYVEKGRRITARHIRQLEKDNIQHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ + A + L ++ S + I L+ + +++ YI TL Sbjct: 292 IAGKVVAKDYIDQNTGELIVAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKSDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DGKV++++ YLSA+EE N IAQAN++L +DGSF ++LV CR GE L R+++D Sbjct: 592 RRVVDGKVSDEIHYLSAIEEGNFVIAQANTNLADDGSFVDDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G ++ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++ R+ +L ++ + + PR +W Sbjct: 952 QLKQAKKDLSEELQILEAGLFGRIQAVLISGGV-------------EAEKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNALEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQRAYDLGTDVRQKVDLNTFSDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKELLQLGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|115350314|ref|YP_772153.1| DNA-directed RNA polymerase subunit beta [Burkholderia ambifaria AMMD] gi|122324274|sp|Q0BJ54|RPOB_BURCM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|115280302|gb|ABI85819.1| DNA-directed RNA polymerase subunit beta [Burkholderia ambifaria AMMD] Length = 1368 Score = 1657 bits (4292), Expect = 0.0, Method: Composition-based stats. Identities = 697/1374 (50%), Positives = 963/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL ++ +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVPGTQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D E + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVILDK-ESPNKPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ KF+ + D Sbjct: 240 EGAQLEFVPERL-RGEVARFDITD-RDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D + E LE++ + I++I LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIASANDEVTESVLEKLREAGIKEIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ + YDLS VGR+K N R+ Sbjct: 358 RVDETTDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++DE+G +ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYMIAQANAAIDENGQLVDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I +RSFL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEEMRSFLTKIYNDSGRKEDLESFTDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMA---------DLDES-GQSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE + ML +A ++ S Q LYDG TGE F+R VT+G Sbjct: 1195 GVPFATPVFDGATEEEMGKMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|53720829|ref|YP_109815.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei K96243] gi|67640298|ref|ZP_00439110.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei GB8 horse 4] gi|76808643|ref|YP_335150.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei 1710b] gi|124385809|ref|YP_001027885.1| DNA-directed RNA polymerase subunit beta [Burkholderia mallei NCTC 10229] gi|126439516|ref|YP_001060758.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei 668] gi|126449748|ref|YP_001082981.1| DNA-directed RNA polymerase subunit beta [Burkholderia mallei NCTC 10247] gi|126454290|ref|YP_001068046.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei 1106a] gi|134283232|ref|ZP_01769933.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 305] gi|167721584|ref|ZP_02404820.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei DM98] gi|167740558|ref|ZP_02413332.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei 14] gi|167826160|ref|ZP_02457631.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei 9] gi|167847672|ref|ZP_02473180.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei B7210] gi|167896244|ref|ZP_02483646.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei 7894] gi|167904626|ref|ZP_02491831.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei NCTC 13177] gi|167912891|ref|ZP_02499982.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei 112] gi|167920851|ref|ZP_02507942.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei BCC215] gi|217424839|ref|ZP_03456336.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 576] gi|226198179|ref|ZP_03793750.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237814156|ref|YP_002898607.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei MSHR346] gi|242315692|ref|ZP_04814708.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 1106b] gi|254174896|ref|ZP_04881557.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei ATCC 10399] gi|254180333|ref|ZP_04886931.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 1655] gi|254190294|ref|ZP_04896802.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|254198573|ref|ZP_04904994.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei S13] gi|254201247|ref|ZP_04907611.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei FMH] gi|254206588|ref|ZP_04912939.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei JHU] gi|254260861|ref|ZP_04951915.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 1710a] gi|254300572|ref|ZP_04968017.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 406e] gi|254357127|ref|ZP_04973401.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei 2002721280] gi|81378946|sp|Q63Q03|RPOB_BURPS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|88909125|sp|Q3JMQ3|RPOB_BURP1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|115305559|sp|P0C151|RPOB_BURMA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158513539|sp|A3P0C5|RPOB_BURP0 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166229286|sp|A3MRU5|RPOB_BURM7 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166229287|sp|A2S7G6|RPOB_BURM9 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166229289|sp|A3NEI7|RPOB_BURP6 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|52211243|emb|CAH37232.1| DNA-directed RNA polymerase beta chain [Burkholderia pseudomallei K96243] gi|76578096|gb|ABA47571.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 1710b] gi|124293829|gb|ABN03098.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei NCTC 10229] gi|126219009|gb|ABN82515.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 668] gi|126227932|gb|ABN91472.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 1106a] gi|126242618|gb|ABO05711.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei NCTC 10247] gi|134245427|gb|EBA45520.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 305] gi|147747141|gb|EDK54217.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei FMH] gi|147752130|gb|EDK59196.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei JHU] gi|148026191|gb|EDK84276.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei 2002721280] gi|157810569|gb|EDO87739.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 406e] gi|157937970|gb|EDO93640.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|160695941|gb|EDP85911.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei ATCC 10399] gi|169655313|gb|EDS88006.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei S13] gi|184210872|gb|EDU07915.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 1655] gi|217392295|gb|EEC32320.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 576] gi|225929699|gb|EEH25715.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237505206|gb|ACQ97524.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei MSHR346] gi|238520992|gb|EEP84447.1| DNA-directed RNA polymerase, beta subunit [Burkholderia mallei GB8 horse 4] gi|242138931|gb|EES25333.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 1106b] gi|254219550|gb|EET08934.1| DNA-directed RNA polymerase, beta subunit [Burkholderia pseudomallei 1710a] Length = 1368 Score = 1657 bits (4292), Expect = 0.0, Method: Composition-based stats. Identities = 697/1375 (50%), Positives = 964/1375 (70%), Gaps = 18/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q S+ FL ++ +R +EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRSIVHQVPFLLATQLESFSTFLQADVPTAQRKSEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ K++ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-REGKVIVQKDKRINAKHIRDLEAAKTKYISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E LE++ ++I++I LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITEGVLEKLREAKIKEIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RVDETVDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++ +DG+ +ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYMIAQANAAIGDDGALVDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAVQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ I LR FL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---ARQTKIEELRVFLTKIYNESGRAEDLESFSDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDES-----------GQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE ++ ML +A + Q LYDG TGEPF+R VTV Sbjct: 1195 GVPFATPVFDGATEEEMSKMLDLA-FPDDIAEQLDMNPSKNQVRLYDGRTGEPFERRVTV 1253 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1254 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1313 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1314 QEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|237749509|ref|ZP_04579989.1| DNA-directed RNA polymerase subunit beta [Oxalobacter formigenes OXCC13] gi|229380871|gb|EEO30962.1| DNA-directed RNA polymerase subunit beta [Oxalobacter formigenes OXCC13] Length = 1368 Score = 1657 bits (4290), Expect = 0.0, Method: Composition-based stats. Identities = 701/1374 (51%), Positives = 965/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY+ FL ++ P +R NEGLQ+AF S+ Sbjct: 1 MHYSFTEKKRIRKSFAKRDNVHQVPFLLATQLESYESFLQADVPPLKRKNEGLQSAFTSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEF+SY P FDV +C R LT A PL+ +RL++ D + T + Sbjct: 61 FPIVSHNGFARLEFISYTLGDPPFDVKECQQRGLTLAAPLRAKVRLVILDKESPT-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG+LPLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI+ RIDRRRK+PVT L A+GM SEEIL F+ + R Sbjct: 180 RIIPYRGSWLDFEFDPKDILFFRIDRRRKMPVTILLKAIGMSSEEILENFFVFDDFLLRP 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + M G +VD G+ ++E K++ + ++ ++ G+ + + D Sbjct: 240 EGAEMEFVTS-RMRGEIARFDIVD-KEGKVLVEKDKRINARNIREIEAAGITRISVPEDF 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++++ +TGE+ +A D I E+ L + + +++I LY + ++ AYI TL Sbjct: 298 LYGRALAKNVIDQDTGEVIAKANDEITEELLTRLREANVKEIQTLYTNDLDQGAYISQTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF++ ++YDLS VGR+K N R+ Sbjct: 358 RIDETVDQMAARIAIYRMMRPGEPPTEESVEALFNGLFYNEERYDLSAVGRMKFNSRIGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DI+++IKILV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 EELTGTMTLSNDDILSVIKILVELRNGRGEIDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + D++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRIS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAMYARLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D VT+++ YLSA+EE IAQANS++DEDG +ELV R AGE ILV E++ Sbjct: 598 RKVVDSHVTDEIDYLSAIEEGKYIIAQANSTIDEDGKLIDELVSSREAGETILVSPERVQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E FVGTG+E A Sbjct: 658 YMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKAFVGTGVERTCAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ +DA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGVVDYIDAGRVVIRVNDDEAAAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +VGD V R D+IADG STDLG+LALG+NMLVAF PW+G N+EDS+LISE++V +D +TS+ Sbjct: 778 QVGDRVERGDVIADGASTDLGELALGQNMLVAFTPWNGLNYEDSILISEKVVEDDRYTSV 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TP+G Sbjct: 838 HIEELSVVARDTKLGPEEITRDISNLAENQLARLDESGIVYIGAEVEAGDVLVGKVTPRG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R G+ +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGLVRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ GPK + ++ + +++ R W+ Sbjct: 958 ELQRYRIDLNDQMRIVEGDAFQRLSRLLIGKKVNGGPKKLARGAEITQEYLADLERYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 DE +E++K E + + F+ K +K+ GD++ PGV ++VKV++A+KR Sbjct: 1018 DIRPSDEDTAMALEAIKESIEEKRHQFDIAFEEKRKKLTQGDELQPGVQKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP D+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGTPADVVLNPLGVPSRMNVGQILETHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ +A + LR+FL+ + E + ++ VL +A+ K+ Sbjct: 1138 WAAKGLGLRIGEML---QAKQKVEELRTFLKSIYLDSGKPEDLDSLTEEEVLHLADNLKN 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESG----------QSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA E I ML +A DE Q L+DG TGE F+RPVTVG Sbjct: 1195 GVPFATPVFDGAKEAEIRRMLDLAYPDEIASKLGMTEAKNQVTLFDGRTGEAFERPVTVG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDLE Sbjct: 1315 EMLTVKSDDVSGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERD 1368 >gi|78064916|ref|YP_367685.1| DNA-directed RNA polymerase subunit beta [Burkholderia sp. 383] gi|88909126|sp|Q39KH5|RPOB_BURS3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|77965661|gb|ABB07041.1| DNA-directed RNA polymerase subunit beta [Burkholderia sp. 383] Length = 1368 Score = 1657 bits (4290), Expect = 0.0, Method: Composition-based stats. Identities = 697/1374 (50%), Positives = 963/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL ++ +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVLAAQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D E + Sbjct: 61 FPIVSHNGFARLEFVSYALSAPAFNIKECQQRGLTYCSALRAKVRLVILDK-ESPNKPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEMPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ KF+ + D Sbjct: 240 EGAQLEFVPERL-RGEVARFDITD-RDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D + E LE++ + I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIASANDEVTESVLEKLREAGIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ DR A + IYR+MRPG+ T E++FN LF+ + YDLS VGR+K N R++ Sbjct: 358 RVDETTDRTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVSR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++DE+G +ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYMIAQANAAIDENGQLIDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I +R FL K+ E + + D+ +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEEMRVFLTKIYNDSGRQEDLESFTDEEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMA---------DLDES-GQSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE + ML +A ++ S Q LYDG TGE F+R VT+G Sbjct: 1195 GVPFATPVFDGATEEEMGKMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|284009044|emb|CBA76000.1| DNA-directed RNA polymerase, beta-subunit [Arsenophonus nasoniae] Length = 1342 Score = 1657 bits (4290), Expect = 0.0, Method: Composition-based stats. Identities = 708/1364 (51%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ ++ GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFAKFIEQDLE----GQNGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTF+I G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L A+ +EEIL+ F+ K ++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMDYGTEEILNLFFEKTIFQIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ IE G+++T+ ++ L++ + + + + Sbjct: 235 NKLLMTLIPERL-RGETASFDIE--ANGKVYIEKGRRITARHIRQLEKDKITSIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L + + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYIDESTGELICTANTELSLDMLARLSQGGYKTIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD DR AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N L+ Sbjct: 352 RTDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEERYDLSAVGRMKFNRSLDR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DAIEGSSILSKQDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDALMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ YLSA+EE N IAQAN+ LD+DG F EEL+ CR GE L +E+++ Sbjct: 592 RLVRDGIVTDEIHYLSAIEEGNYIIAQANTVLDDDGRFVEELITCRNKGESSLFSQEQVE 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+++ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRSDKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 ALGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + +++R+ +L + + + + PR +W Sbjct: 952 QLRDAKKDLTEELRIFEAGLFARIRAVLTNGG-------------IEGEKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + +DE+ Q +E L QY+ K+ E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELSFKDEEKQNQLEQLAEQYDELKAEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPVEDMPYDESGNPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + T +S + D+ VLR+A K Sbjct: 1119 MAAKGIGDKINTMLKQQREVAKLKEFIQKAYDLGDDPRQTVDLSTFSDEEVLRLAHNLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L +A+L SGQ LYDG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEKEIKELLTLAELPTSGQITLYDGRTGEKFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|289648949|ref|ZP_06480292.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. aesculi str. 2250] gi|289675478|ref|ZP_06496368.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 1336 Score = 1657 bits (4290), Expect = 0.0, Method: Composition-based stats. Identities = 713/1344 (53%), Positives = 978/1344 (72%), Gaps = 9/1344 (0%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 +D+P L+ +Q SY FL D+ + GL AAFKSVFPI ++SG A LE+V Y Sbjct: 1 MDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSVFPIISYSGNAALEYVGYRLGE 60 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 P FDV +C+ R +TYAVPL++ +RLI+FD + K+IKDIKEQ +YMG++PLMT++GT Sbjct: 61 PAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAIKDIKEQEVYMGEIPLMTENGT 118 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 FVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ RIIP +G W+D EFD KD + Sbjct: 119 FVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVF 178 Query: 204 VRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 VRIDRRRK+P + L ALG +E++L FY V+ RG+ L L G Sbjct: 179 VRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRGENLSLELVPQRL-RGEIAVLD 237 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 ++D D G+ ++E G+++T+ + L++ G+K L + D + G A+ IV+ TGEI E Sbjct: 238 ILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDYVLGRTTAKVIVHPATGEIIAE 296 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 ++ + L +I +++ I LY + ++ ++ +TL D ++ +AL++IYR+MRP Sbjct: 297 CNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDSTSNQLEALVEIYRMMRP 356 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKIL 443 G+ T AE++FN LFF ++YDLS VGR+K N R+ + + KEDI+A++K L Sbjct: 357 GEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIEGSGVLCKEDIVAVLKTL 416 Query: 444 VDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL 503 VD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ER++KER+S + + +MPQDL Sbjct: 417 VDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDL 476 Query: 504 INAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHP 563 INAKPV +AV EFF SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHP Sbjct: 477 INAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHP 536 Query: 564 THYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEE 623 THYGR+CP ET EG NIGL++SL ++AR N YGF+E+PYR V +G VT ++V+LSA+EE Sbjct: 537 THYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEGLVTEEIVFLSAIEEA 596 Query: 624 NRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLE 683 + IAQA++++++ +ELV R E + + +D SPKQVVS+AASLIPFLE Sbjct: 597 DHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVTLMDVSPKQVVSVAASLIPFLE 656 Query: 684 NDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRI 743 +DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ SG +VA+R G+++ VDA RI Sbjct: 657 HDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRI 716 Query: 744 VIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLG 803 V+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV GD V+R+DI+ADGPSTD+G Sbjct: 717 VVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDRVQRSDIMADGPSTDMG 776 Query: 804 DLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITR 863 +LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+IHI+E +ARDTKLGPEEIT Sbjct: 777 ELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITA 836 Query: 864 DIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVD 923 DIPNV E L +DE GI+ VGAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA D Sbjct: 837 DIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 896 Query: 924 VRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIY 983 V+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Q++ + +D ++E I++ + Sbjct: 897 VKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDEIRKDLNEEFRIVEGATF 956 Query: 984 SRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYE 1043 RL L G+ A G G KK ++++++ QW++ + ++ + +E + Sbjct: 957 ERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWFKLRMAEDALNEQLEKAQAYIV 1015 Query: 1044 TSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRI 1103 + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R IQ GDKMAGRHGNKG+VS I Sbjct: 1016 DRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVI 1075 Query: 1104 LPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANG 1163 +P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG A GLG+KI ++ + + Sbjct: 1076 MPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMLEEQR--- 1132 Query: 1164 DISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSM 1222 ++ LR FL ++ G E + D D+ +L +A+ ++GVP++TPVFDGA E I +M Sbjct: 1133 KVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLRNGVPMATPVFDGAKESEIKAM 1192 Query: 1223 LRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQP 1282 L++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQP Sbjct: 1193 LKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1252 Query: 1283 LGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETG 1342 LGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV G+ E G Sbjct: 1253 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPG 1312 Query: 1343 TPESFNVLVKEMQALGLSIDLENS 1366 PESFNVL+KE+++LG+ IDLE Sbjct: 1313 MPESFNVLIKEIRSLGIDIDLETE 1336 >gi|157368526|ref|YP_001476515.1| DNA-directed RNA polymerase subunit beta [Serratia proteamaculans 568] gi|166991528|sp|A8G8E7|RPOB_SERP5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157320290|gb|ABV39387.1| DNA-directed RNA polymerase, beta subunit [Serratia proteamaculans 568] Length = 1342 Score = 1657 bits (4290), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+VY R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFAKVVYEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ IE G+++T+ ++ L++ ++ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKIYIEKGRRITARHIRQLEKDEIQSIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ AYI T+ Sbjct: 292 IAGKVVAKDYIDTNTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIGIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD+DG F E+LV CR GE L R+++D Sbjct: 592 RRVRDGLVTDEINYLSAIEEGNFVIAQANSNLDDDGRFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VA+R G+++ VDA RIVI+ E ++ +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVARRGGVIQYVDASRIVIKVNEDEMLAGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L ++ +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVAGGV-------------EAEKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKSDFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI ++ ++ + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINQMLKQHQEVAKLREFIQKAYDLGDDVCQKVDLNTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L M + SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKESEIKQLLEMGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEGE 1342 >gi|227328365|ref|ZP_03832389.1| DNA-directed RNA polymerase subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 1342 Score = 1656 bits (4289), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIKSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L ALG +E+IL F+ KIVY G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKIVYEING 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ IE G+++T+ ++ L++ G++ + + + Sbjct: 235 NKLQMDLVPERL-RGETASFDIE--ANGKVYIEKGRRITARHIRQLEKDGIERIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +++D ++ TGE+ A + L ++ S + I L+ + +++ AY+ T+ Sbjct: 292 IAGKVLSKDYIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPSNDRLSALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMYQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V + VT+++ YLSA+EE N IAQAN++LDE+G F +ELV CR GE L R++++ Sbjct: 592 RRVRENVVTDEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVE 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVIR + ++ P +G+DIY L K+ RSNQNTC++Q P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L +D + + PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGGV-------------EADKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ ++ + + +S + D+ V+R+AE K Sbjct: 1119 MAAKGIGEKINAMLKQHEEVTKLREFIQRAYDLGDDVRQKVDLSTFSDEEVMRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L+M + SGQ LYDG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEKEIKELLQMGGIPTSGQITLYDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|134294435|ref|YP_001118170.1| DNA-directed RNA polymerase subunit beta [Burkholderia vietnamiensis G4] gi|166229290|sp|A4JAN2|RPOB_BURVG RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|134137592|gb|ABO53335.1| DNA-directed RNA polymerase subunit beta [Burkholderia vietnamiensis G4] Length = 1368 Score = 1656 bits (4289), Expect = 0.0, Method: Composition-based stats. Identities = 697/1375 (50%), Positives = 960/1375 (69%), Gaps = 18/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL ++ +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVPATQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D E + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVILDK-ESPNKPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ KF+ + D Sbjct: 240 EGAQLEFVPERL-RGEVARFDITD-RDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D + E LE++ + I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIASANDEVTESVLEKLREAGIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ DR A + IYR+MRPG+ T E++FN LF+ + YDLS VGR+K N R+ Sbjct: 358 RVDETTDRTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++DE+G +ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYMIAQANAAIDENGQLIDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I LR FL K+ E + + D+ +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEELRVFLTKIYNESGRQEDLESFTDEEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDES-----------GQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE + ML +A + Q LYDG TGE F+R VT+ Sbjct: 1195 GVPFATPVFDGATEEEMGKMLDLA-FPDDIAQQLDMNPSKNQVRLYDGRTGEQFERRVTL 1253 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1254 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1313 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1314 QEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|39997954|ref|NP_953905.1| DNA-directed RNA polymerase subunit beta [Geobacter sulfurreducens PCA] gi|81701325|sp|Q748Y6|RPOB_GEOSL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|39984899|gb|AAR36255.1| DNA-directed RNA polymerase, beta subunit [Geobacter sulfurreducens PCA] gi|298506895|gb|ADI85618.1| DNA-directed RNA polymerase, beta subunit [Geobacter sulfurreducens KN400] Length = 1370 Score = 1656 bits (4289), Expect = 0.0, Method: Composition-based stats. Identities = 738/1364 (54%), Positives = 1005/1364 (73%), Gaps = 11/1364 (0%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK F K +IIDIP+LI++QK SY FL ++ P+ R N GL+A FKSVFPI FS A Sbjct: 11 LRKNFAKIKKIIDIPNLIDIQKNSYKRFLQIDTPPEARKNSGLEAVFKSVFPIKDFSDTA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE+V+Y PK+DV++C R +T+A P+K+ +RL+V+DV++ TG +SI+DIKEQ +Y Sbjct: 71 SLEYVTYTLGAPKYDVEECHQRGMTFAAPMKVKVRLVVWDVNKDTGVRSIRDIKEQEVYF 130 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++PLMT++GTF+I G +R++VSQLHRSPG+ +DHDKG+ SGK+LY+ R+IP +G W+ Sbjct: 131 GEIPLMTENGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSARVIPYRGSWL 190 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D EFD KDI+ VRIDRRRK+P T L ALG +E +L+ FY + Sbjct: 191 DFEFDHKDILFVRIDRRRKMPATVLLKALGYSAEALLNYFYKSEEILVAAEGMWKKADPE 250 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 L+ K S +V TGE ++++ +K T ++ + E G+ + IT + + G Y + DI Sbjct: 251 -LLASQKASVDIVAPKTGEVLLKANRKFTKAAIRKMTEHGITQIPITMEEVLGKYASNDI 309 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 V+ TGE+ +E D I + L++I I + +L++D+++ + +R+TL+ DK ++ Sbjct: 310 VDPSTGEVIVECNDEITQARLDDIKAKGITEFKVLFIDNLHVTSSLRDTLIADKIAATEE 369 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 AL++IYR +RPGD T A+++F LFF++++YDLS VGR+K+N +L L+ P D + + Sbjct: 370 ALIEIYRRLRPGDPPTLKSAQALFENLFFNAERYDLSAVGRLKLNFKLGLNVPLDCQTLT 429 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 K+D++ +++ L+DL+NGKGTIDDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER+S Sbjct: 430 KDDVLEVVRYLIDLKNGKGTIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSL 489 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 +++++MP DLIN+KPV + V EFF SSQLSQ + N LS +TH RRLSALG GG+ R Sbjct: 490 QEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRE 549 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+++AR+N +GF+ETPYR V DGKVT+ Sbjct: 550 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRIVQDGKVTS 609 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 DV + SA+EEE IAQAN+ +D DG F E V R +GE +LV R++++ +D +P Q+V Sbjct: 610 DVKFFSALEEEGHAIAQANAEMDADGRFVNEYVSARKSGEFLLVHRDELELMDVAPMQLV 669 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S+AASLIPFLENDD+NR LMG NMQRQAVPLLKA++P VGTGME VVAK SG ++VA+ Sbjct: 670 SVAASLIPFLENDDANRALMGSNMQRQAVPLLKADSPLVGTGMERVVAKDSGVSVVARHT 729 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 GIVE VDA RIV++ E + D + +GVDIY L+KF RSNQNTC+NQRP+VKVGD V+R D Sbjct: 730 GIVESVDASRIVVKIDEDEFDETGTGVDIYNLIKFARSNQNTCINQRPVVKVGDHVKRGD 789 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 +IADGPSTD+G+LALG+N++VAFMPW GYNFEDS+L+SE++V +D +TSIHIEEFE +AR Sbjct: 790 VIADGPSTDMGELALGQNVVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEFECVAR 849 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLG EEIT DIPN+ EE LK++DE GII +GAEV PGDILVGKITPKGE+ ++PEEKL Sbjct: 850 DTKLGKEEITSDIPNLGEEALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKL 909 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFGEKA DVRDTSLRVP GV GTV+ +IF+R G DK+ R+ +ER + + L +D+ Sbjct: 910 LRAIFGEKAGDVRDTSLRVPPGVEGTVIGAKIFSRKGADKDSRTEMIERMEEDKLRKDEQ 969 Query: 973 DEQVILDRNIYSRLMEILCGQNA------VSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 DE I+ + +L ++L G++A SG K ++ + + P +W + +V Sbjct: 970 DEIRIIRNSAVGKLKKLLVGKSAAVKVEDKSGRTVIAKGAAITEEALDAIPLDRWDEISV 1029 Query: 1027 QDEK-VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 E V V ++ + I+ F +K++K++ GDD+PPGV+++VKV++A+KR +Q Sbjct: 1030 SGEAGVDEKVSAILQTLQQQIDIIRYVFDDKVQKLKRGDDLPPGVIKMVKVYIAIKRKLQ 1089 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG+VSRILP EDMP+++DG PV+IVLNPLGVPSRMNVGQI ETHLGWA Sbjct: 1090 VGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQILETHLGWAA 1149 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 G+G KI+ ++ Y ++ +L+ V GT + D D ++ VA++ + GV Sbjct: 1150 KGIGWKIEEMLESYSP---ADHIKGYLKDVYGTTEMDTFLDSLDKDELMNVAKRLQRGVA 1206 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 +++PVF+GA EE I SML A DE+ Q LYDG +GEPF VTVG +Y+LKL+H+V D Sbjct: 1207 MASPVFEGASEEQIRSMLDKAGFDETAQVSLYDGKSGEPFKHKVTVGVMYVLKLHHLVDD 1266 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDDV GR Sbjct: 1267 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVAGR 1326 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 TR+YE+IV G T E G PESFNVL+KE+Q+L L ++L Sbjct: 1327 TRMYEAIVKGKHTLEPGLPESFNVLIKELQSLCLDVELLEGDED 1370 >gi|133418|sp|P19175|RPOB_PSEPU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|45729|emb|CAA33846.1| beta-subunit of RNA polymerase [Pseudomonas putida] Length = 1357 Score = 1656 bits (4288), Expect = 0.0, Method: Composition-based stats. Identities = 708/1365 (51%), Positives = 974/1365 (71%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL P L AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGSIQGSLPRRRLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQ+HRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQMHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L+TFY V+ G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D +TG+ ++E G+++T+ + L++ GVK L + + Sbjct: 239 EKLSLELVPQRLA-GEVAVMDIHD-ETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E + + L ++ +++ I LY + ++ +I +TL Sbjct: 297 VLGRTTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF +++YDLS +GR+K N R+ Sbjct: 357 KIDTTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSPLGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ ++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRCS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G V++D+V+LSA+EE + IAQA++++++ +ELV R E + E + Sbjct: 597 RVVKEGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +V +R G+++ VDA RIV+R + +++ VDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVRRRGGVIDSVDASRIVVRVADDEVETGERRVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD+V+R DI+AD STD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDKVQRGDIMADRASTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARD KLGP EIT IPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDNKLGPREITSGIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++++E+ Sbjct: 897 HTQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTQGTVIDVQVFTRDGVERDSRALAIEKM 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L GQ G G KK TV++ +++ QW+ Sbjct: 957 QLDEIPQDLNEEFRIVEGATFERLRSALNGQVVDGG-AGLKKGTVITDEVLDGLDDGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K +Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRNVQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + + LR FL +V G E + ++ D+ +L +A K Sbjct: 1136 LAAKGLGEKIDRMLEEQR---KAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLK 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ +L+DG T F+RPVTVGY+YMLKLNH Sbjct: 1193 KGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTRNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G ESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMAESFNVLIKEIRSLGIDIDLETE 1357 >gi|322834821|ref|YP_004214848.1| DNA-directed RNA polymerase, subunit beta [Rahnella sp. Y9602] gi|321170022|gb|ADW75721.1| DNA-directed RNA polymerase, beta subunit [Rahnella sp. Y9602] Length = 1342 Score = 1656 bits (4288), Expect = 0.0, Method: Composition-based stats. Identities = 711/1364 (52%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIKSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+ Y R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKVTYQIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ ++ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ADGKVYVEKGRRITARHIRQLEKDEIQRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V++D ++ TGE+ + A + L ++ S + I L+ + +++ AY+ T+ Sbjct: 292 IAGKVVSKDYIDTNTGELIVPANMELSLDLLAKLSQSGHKTIETLFTNDLDHGAYMSETI 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+ +RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIQVMKKLIGIRNGQGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D Sbjct: 592 RRVRDGLVTDEINYLSAIEEGNFVIAQANSNLDEEGRFIEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR GIV+ VDA RIVIR E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGIVQYVDASRIVIRVNEEEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ L +D + + PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIQSALVAGGV-------------EADKLGKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++ DE Q +E L QY+ KS E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELSLTDEDKQNQLEQLAEQYDELKSEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + ++ + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVSKLREFIQRAYDLGDDVRQKVDLTTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L M + SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKETEIKQLLEMGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|83749356|ref|ZP_00946352.1| DNA-directed RNA polymerase beta chain [Ralstonia solanacearum UW551] gi|83723981|gb|EAP71163.1| DNA-directed RNA polymerase beta chain [Ralstonia solanacearum UW551] Length = 1368 Score = 1656 bits (4288), Expect = 0.0, Method: Composition-based stats. Identities = 706/1376 (51%), Positives = 964/1376 (70%), Gaps = 20/1376 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL +++ +R EGLQAAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHVSVAQRKTEGLQAAFNAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A +EFVSY P FDV +C R LT+ L+ +RLI+ D + T + Sbjct: 61 FPIVSHNGLARMEFVSYHLSHPPFDVKECQQRGLTFHSALRAKVRLIINDRENPT---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+IKEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEIKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L ++G+ E+IL+ F+ ++ + Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKS 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L G + D G+ VIE K++ + ++ L G K + + D Sbjct: 238 DGALMEFVPERL-RGEVARFDISD-KNGKVVIEKDKRINAKHIRDLDAAGTKLISVPEDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D + E LE++ + ++DI LY + ++ Y+ TL Sbjct: 296 LLGRVLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKDIQTLYTNDLDQGPYMSQTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD D+ A + IYR+MRPG+ T E++F LF++ D YDLS VGR+K+N RLN Sbjct: 356 RTDDTVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYNEDSYDLSRVGRMKVNSRLNR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DI+ IK+LV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 SEGTGPMVLTDDDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRIS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A++N YGF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNDYGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPREK 660 RKV + K+T++V YLSA+EE +AQAN+++D+DG+ +ELV R E +V ++ Sbjct: 596 RKVENSKLTDEVHYLSAIEEGKYVVAQANATVDKDGNLVDELVSAREGSERETRMVTPDR 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + +ID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 656 VQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGIERTVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 716 VDSGTAVQATRGGVVDYVDANRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VKVGD V R D+IADG STD+G+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 776 MVKVGDIVARGDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N++E L +DE GI +GAEV GD+LVGK+TP Sbjct: 836 SIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVLVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R G+ +++R+ S+ Sbjct: 896 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVTRDKRAQSII 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 E+++ D +D+ I++ + + RL +L G+ A GPK K T L+ + +++ + Sbjct: 956 DEELKRYRLDLNDQLRIVEGDAFQRLERLLVGKVANGGPKKLSKGTALTKEYLADLDKWH 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ DE+V +E++K E + + F+ K +K+ GD++PPGV+++VKV++A+ Sbjct: 1016 WFDIRPSDEEVAAQLEAVKEAIEQKRHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAV 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1076 KRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG++I +++ KA + LR L ++ E + D VL +AE Sbjct: 1136 LGWAARGLGERIGNML---KAQAKAAELRKLLGQIYNESGKVEDLDSLTDAEVLELAENL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQS----------ILYDGLTGEPFDRPVT 1250 K GVP +TPVFDGA E+ I ML +A + + L+DG TGE F+RPVT Sbjct: 1193 KKGVPFATPVFDGAHEDEIRRMLDLAYPADIAKEKGLTASKQQVTLFDGRTGEAFERPVT 1252 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 +G ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YV Sbjct: 1253 LGVMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYV 1312 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 LQEMLT+KSDDV GRT+VYE+IV G + + G PESFNVLVKE+++LG+ IDLE + Sbjct: 1313 LQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLERN 1368 >gi|190572937|ref|YP_001970782.1| DNA-directed RNA polymerase subunit beta [Stenotrophomonas maltophilia K279a] gi|226699451|sp|B2FQ38|RPOB_STRMK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|190010859|emb|CAQ44468.1| putative DNA-directed RNA polymerase, beta-subunit [Stenotrophomonas maltophilia K279a] Length = 1388 Score = 1655 bits (4287), Expect = 0.0, Method: Composition-based stats. Identities = 701/1390 (50%), Positives = 970/1390 (69%), Gaps = 35/1390 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL N+ P +R + GL AA KSVF Sbjct: 7 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENVDPAKRTDHGLHAALKSVF 66 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI ++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 67 PIASYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 124 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT++GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 125 YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 184 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EE+L+ F+ + D Sbjct: 185 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD 244 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G + L D D + ++E+GK++T+ +K L+ G+ L + D + Sbjct: 245 EGVQLELVPERLRGETLGFDLADGD--KVIVEAGKRITARHIKQLEASGIAALAVPDDYI 302 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+ TGE+ +A D I ++ L+ + + + L+V+ ++ Y+ NTL Sbjct: 303 VGRILSHDVVDASTGELLAQANDEITDEQLQAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 362 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLS VGR+K N R+ Sbjct: 363 IDPTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRVGRK 422 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + +IK+L ++RNG+G +DDID+LGN Sbjct: 423 ETTGEAVLYDSKYFGERNDEESKRLVAAHGDSSDILDVIKVLTEIRNGRGVVDDIDHLGN 482 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 483 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 542 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 543 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 602 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL +AR N YGF+ETPYRKV DGKV ++V +LSA+EE IAQAN+ D G+ T Sbjct: 603 LINSLAVYARTNQYGFLETPYRKVVDGKVYDEVEFLSAIEENEYVIAQANALTDAKGTLT 662 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VSIAA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 663 EQFVPCRFQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAV 722 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD-PSTSGVD 760 P L+A+ P VGTG+E VA+ SG + A+R G + Q+DA RIV++ E ++ + +GVD Sbjct: 723 PTLRAQKPLVGTGIERAVARDSGVTVNARRGGEIVQIDAARIVVKVNEEEIVGATDAGVD 782 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV+VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 783 IYNLVKYTRSNQNTCINQRPLVQVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 842 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 843 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 902 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 903 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 962 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY RL + G+ G Sbjct: 963 DVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYMRLRSQIVGKVVNGG-A 1021 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 G KK V++ + ++ W+ ++DE +E + Q + + E RF +K KI Sbjct: 1022 GLKKGDVITDAFLDGLKKADWFALRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGKI 1081 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G VDI Sbjct: 1082 TAGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGETVDI 1141 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI++++ +A ++ LR FL+ + Sbjct: 1142 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQAMM---EAQAAVADLRKFLDDIYNHDD 1198 Query: 1181 ----HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 + +S + D+ +LR+A GVP++TPVFDGA E I ML +ADL SGQ+ L Sbjct: 1199 TNVANRVDLSQFSDEELLRLARNLTDGVPMATPVFDGATEAEIKRMLELADLPSSGQTQL 1258 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1259 YDGRTGEAFDRHTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1318 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1319 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1378 Query: 1357 LGLSIDLENS 1366 L ++++LE++ Sbjct: 1379 LAINMELEDN 1388 >gi|50119183|ref|YP_048350.1| DNA-directed RNA polymerase subunit beta [Pectobacterium atrosepticum SCRI1043] gi|81646553|sp|Q6DAN0|RPOB_ERWCT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|49609709|emb|CAG73142.1| DNA-directed RNA polymerase, beta-subunit [Pectobacterium atrosepticum SCRI1043] Length = 1342 Score = 1655 bits (4287), Expect = 0.0, Method: Composition-based stats. Identities = 706/1364 (51%), Positives = 970/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRL++++ + G ++ Sbjct: 57 FPIKSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L ALG + +IL F+ KIVY G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTAQILDLFFDKIVYEING 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ IE G+++T+ ++ L++ ++ + + + Sbjct: 235 NKLQMDLVPERL-RGETASFDIE--ANGKVYIEKGRRITARHIRQLEKDSIERIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +++D ++ TGE+ A + L ++ S + I L+ + +++ AY+ T+ Sbjct: 292 IAGKVLSKDYIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPSSDRLSALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V + VT+++ YLSA+EE N IAQAN++LDE+G F +ELV CR GE L R++++ Sbjct: 592 RRVRENVVTDEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVE 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVIR + ++ P +G+DIY L K+ RSNQNTC++Q P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ ++ R+ +L +D + + PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFGRIHAVLVSGGV-------------EADKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ ++ + + +S + D+ V+R+AE K Sbjct: 1119 MAAKGIGEKINAMLKQHEEVTKLREFIQRAYDLGDDLRQKVDLSTFSDEEVMRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L+M + SGQ LYDG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEKEIKELLQMGGIPTSGQITLYDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEEK 1342 >gi|238765329|ref|ZP_04626255.1| DNA-directed RNA polymerase subunit beta [Yersinia kristensenii ATCC 33638] gi|238696456|gb|EEP89247.1| DNA-directed RNA polymerase subunit beta [Yersinia kristensenii ATCC 33638] Length = 1342 Score = 1655 bits (4286), Expect = 0.0, Method: Composition-based stats. Identities = 714/1364 (52%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTTQILDLFFDKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E +++T+ ++ L++ G+ + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ AYI TL Sbjct: 292 IAGKVVAKDYIDENTGELICAANMELSLDLLAKLSQSGHKQIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQA S+LDEDG F E+LV CR GE L R+++D Sbjct: 592 RRVRDGVVTDEINYLSAIEEGNFVIAQAKSNLDEDGRFIEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VA MPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVASMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ +++R+ +L + +D +S+ PR +W Sbjct: 952 QLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEADKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ + + + +S + DD VLR+AE K Sbjct: 1119 MAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|167587779|ref|ZP_02380167.1| DNA-directed RNA polymerase subunit beta [Burkholderia ubonensis Bu] Length = 1368 Score = 1655 bits (4285), Expect = 0.0, Method: Composition-based stats. Identities = 699/1374 (50%), Positives = 965/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL ++ +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVLTAQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D E + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVILDK-ESPNKPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ KF+ + D Sbjct: 240 EGAQLEFVPERL-RGEVARFDITD-RDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D + E LE++ + I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEVTESVLEKLREAGIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ + YDLS VGR+K N R+ Sbjct: 358 RVDETTDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+ + YLSA+EE IAQAN+++DE+G+ +ELV R AGE ++V ++I Sbjct: 598 RKVVDGKVTDQIDYLSAIEEGRYMIAQANAAIDENGTLIDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I LR+FL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEELRAFLTKIYNESGRQEDLESFTDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMA---------DLDES-GQSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE + ML +A ++ S Q LYDG TGE F+R VT+G Sbjct: 1195 GVPFATPVFDGATEEEMGKMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|206558633|ref|YP_002229393.1| DNA-directed RNA polymerase subunit beta [Burkholderia cenocepacia J2315] gi|226699380|sp|B4E5B2|RPOB_BURCJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|198034670|emb|CAR50537.1| DNA-directed RNA polymerase beta chain [Burkholderia cenocepacia J2315] Length = 1368 Score = 1655 bits (4285), Expect = 0.0, Method: Composition-based stats. Identities = 698/1374 (50%), Positives = 964/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL ++ +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVPATQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D E + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVILDK-ESPNKPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ KF+ + D Sbjct: 240 EGAQLEFVPERL-RGEVARFDITD-RDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D + E LE++ + I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIASANDEVTESVLEKLREAGIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + I+R+MRPG+ T E++FN LF+ + YDLS VGR+K N R+ Sbjct: 358 RVDETTDKTAARIAIHRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++DEDG +ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYMIAQANAAIDEDGRLIDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ ++E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAASLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I LR+FL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEELRTFLTKIYNESGRQEDLESFTDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMA---------DLDES-GQSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE + ML +A ++ S Q LYDG TGE F+R VT+G Sbjct: 1195 GVPFATPVFDGATEEEMGKMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|134096328|ref|YP_001101403.1| DNA-directed RNA polymerase subunit beta [Herminiimonas arsenicoxydans] gi|158513609|sp|A4G9U5|RPOB_HERAR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|133740231|emb|CAL63282.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (Transcriptase subunit beta) (RNA polymerase subunit beta) [Herminiimonas arsenicoxydans] Length = 1368 Score = 1655 bits (4285), Expect = 0.0, Method: Composition-based stats. Identities = 700/1374 (50%), Positives = 955/1374 (69%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + ++P L+ Q SY FL + P +R NEGLQ+AF S+ Sbjct: 1 MHYSFTEKKRIRKSFAKRANVHNVPFLLATQLESYHDFLQEDKIPSQRKNEGLQSAFTSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEF+SY P F++ +C R LTYA PL+ +RL++ D + T + Sbjct: 61 FPIVSHNGFARLEFLSYVLGDPPFNIKECQQRGLTYASPLRAKVRLVILDKESPT-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG+LPLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 120 KEMKEQEVYMGELPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI+ R+DRRRK+PVT L A+GM E+IL F+ ++ Sbjct: 180 RIIPYRGSWLDYEFDPKDILFFRVDRRRKMPVTILLKAIGMTPEQILENFFVFDDFTLHA 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D A L G + D G+ ++ K++ S ++ ++ G+K + + D Sbjct: 240 DGAEMKFVAERL-RGEVARFDITD-KAGKVLVAKDKRINSKHVRDVEAAGIKQISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D + + L + +I I LY + ++ YI TL Sbjct: 298 LLGRILAKNIVDADTGEVIASANDELTDDLLARLREGKISHIQTLYTNDLDQGGYISQTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ A + IYR+MRPG+ T E++FN LF++ D+YDLS VGR+K N R+ Sbjct: 358 RMDDTNDQMAAKVAIYRMMRPGEPPTEDSVEALFNGLFYNPDRYDLSAVGRMKFNRRIGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D+ + ED++A+IKILV+LRNG+G +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DSLTGDMTLSNEDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + D++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV KVT+ + YLSA+EE IAQAN+++D+ G ++ELV R AGE ILV E++ Sbjct: 598 RKVEGSKVTDQIDYLSAIEEGRYIIAQANATIDKAGMLSDELVSAREAGETILVSPERVQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E VGTG+E VA Sbjct: 658 YMDVAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R GIV+ +DA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGIVDYIDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +VGD V ++D+IADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 QVGDRVAKHDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLG EEITRDI N++E L +DE GI+ +GAEV GD LVGK+TPKG Sbjct: 838 HIEELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVTAGDTLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIPRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL ++L G+ GPK K T ++++ +++ + W+ Sbjct: 958 ELQRYRLDLNDQLRIVEGDAFQRLEKMLVGKVVNGGPKKIAKGTKITAEYLADLDKYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 D+ +E++K + + F+ K +K+ GD++PPGV ++VKV++A+KR Sbjct: 1018 DIRPSDDTSANALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VSRILP EDMP + DGTP D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++N I+ LR FL + TE + + D +L +A K+ Sbjct: 1138 WAAKGLGLRIGEMLN---TQVQIAELRKFLAAIYNESGKTEDLDSFSDAEILELASNLKN 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQ----------SILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGADE ML +A D + +YDG TGE F+R VTVG Sbjct: 1195 GVPFATPVFDGADEGETRRMLDLAYPDHIAKQLGMTASKNQVTMYDGRTGEAFERTVTVG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDLE Sbjct: 1315 EMLTVKSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERD 1368 >gi|257483178|ref|ZP_05637219.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1336 Score = 1654 bits (4284), Expect = 0.0, Method: Composition-based stats. Identities = 712/1344 (52%), Positives = 976/1344 (72%), Gaps = 9/1344 (0%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 +D+P L+ +Q SY FL D+ + GL AAFKSVFPI ++SG A LE+V Y Sbjct: 1 MDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSVFPIISYSGNAALEYVGYRLGE 60 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 P FDV +C+ R +TYAVPL++ +RLI+FD + K+IKDIKEQ +YMG++PLMT++GT Sbjct: 61 PAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAIKDIKEQEVYMGEIPLMTENGT 118 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 FVI G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ RIIP +G W+D EFD KD + Sbjct: 119 FVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVF 178 Query: 204 VRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 VRIDRRRK+P + L ALG +E++L FY V+ RG+ L L G Sbjct: 179 VRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRGENLSLELVPQRL-RGEIAVLD 237 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 ++D D G+ ++E G+++T+ + L++ G+K L + D + G A+ IV+ TGEI E Sbjct: 238 ILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDYVLGRTTAKVIVHPATGEIIAE 296 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 ++ + L +I +++ I LY + ++ ++ +TL D ++ +AL++IYR+MRP Sbjct: 297 CNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDSTSNQLEALVEIYRMMRP 356 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKIL 443 G+ T AE++FN LFF ++YDLS VGR+K N R+ + + KEDI+A++K L Sbjct: 357 GEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIEGSGVLCKEDIVAVLKTL 416 Query: 444 VDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL 503 VD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ER++KER+S + + +MPQDL Sbjct: 417 VDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDL 476 Query: 504 INAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHP 563 INAKPV +AV EFF SSQLSQ N LS ITH RR+SALG G + R RAG E+RDVHP Sbjct: 477 INAKPVAAAVKEFFGSSQLSQFMGQNNPLSEITHKRRVSALGPGSLTRERAGFEVRDVHP 536 Query: 564 THYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEE 623 THYGR+CP ET EG NIGL++SL ++AR N YGF+E+PYR V +G VT ++V+LSA+EE Sbjct: 537 THYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEGLVTEEIVFLSAIEEA 596 Query: 624 NRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLE 683 + IAQA++++++ +ELV R E + + +D SPKQVVS+AASLIPFLE Sbjct: 597 DHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVTLMDVSPKQVVSVAASLIPFLE 656 Query: 684 NDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRI 743 +DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ SG +VA+R G+++ VDA RI Sbjct: 657 HDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRI 716 Query: 744 VIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLG 803 V+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV GD V+R+DI+ADGPSTD+G Sbjct: 717 VVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDRVQRSDIMADGPSTDMG 776 Query: 804 DLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITR 863 +LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+IHI+E +ARDTKLGPEEIT Sbjct: 777 ELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITA 836 Query: 864 DIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVD 923 DIPNV E L +DE GI+ VGAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA D Sbjct: 837 DIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 896 Query: 924 VRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIY 983 V+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Q++ + +D ++E I++ + Sbjct: 897 VKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDEIRKDLNEEFRIVEGATF 956 Query: 984 SRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYE 1043 RL L G+ A G G KK ++++++ QW++ + ++ + +E + Sbjct: 957 ERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWFKLRMAEDALNEQLEKAQAYIV 1015 Query: 1044 TSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRI 1103 + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R IQ GDKMAGRHGNKG+VS I Sbjct: 1016 DRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVI 1075 Query: 1104 LPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANG 1163 +P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG A GLG+KI ++ + + Sbjct: 1076 MPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMLEEQR--- 1132 Query: 1164 DISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSM 1222 ++ LR FL ++ G E + D D+ +L +A+ ++GVP++TPVFDGA E I +M Sbjct: 1133 KVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLRNGVPMATPVFDGAKESEIKAM 1192 Query: 1223 LRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQP 1282 L++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQP Sbjct: 1193 LKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1252 Query: 1283 LGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETG 1342 LGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV G+ E G Sbjct: 1253 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPG 1312 Query: 1343 TPESFNVLVKEMQALGLSIDLENS 1366 PESFNVL+KE+++LG+ IDLE Sbjct: 1313 MPESFNVLIKEIRSLGIDIDLETE 1336 >gi|114331772|ref|YP_747994.1| DNA-directed RNA polymerase subunit beta [Nitrosomonas eutropha C91] gi|122313481|sp|Q0AF53|RPOB_NITEC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|114308786|gb|ABI60029.1| DNA-directed RNA polymerase subunit beta [Nitrosomonas eutropha C91] Length = 1359 Score = 1654 bits (4283), Expect = 0.0, Method: Composition-based stats. Identities = 716/1365 (52%), Positives = 962/1365 (70%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K I+ P L+ Q SY FL ++AP +R N+GLQAAF +V Sbjct: 1 MSYSFAEKKRIRKSFAKRTSILPFPFLLATQIESYADFLQADVAPGKRKNQGLQAAFNAV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + S A L+F+SY FDV +C R LTYA PL+ +RL + D ++ Sbjct: 61 FPIESHSNNARLDFISYMLGTSVFDVKECQQRGLTYASPLRARVRLTIMDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT+ G+FV+ G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTETGSFVVNGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+PVT+ L A+G S +IL+ F+ ++ G Sbjct: 179 RIIPYRGSWLDFEFDPKDYVYFRIDRRRKMPVTTLLKAMGYSSTQILADFFEFDHFTLAG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + F L L G S +V D G+ ++ K++T+ ++ L++ + + + + Sbjct: 239 NKILFHLIPERL-RGELASFDIVSED-GKVFVQKDKRITAKHVRDLQQANLTKISVPEEF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIR--DIPILYVDSVNNNAYIRN 360 L G +AEDIV+ ETGE+ A I+E LE I ++ + +I L+V+ +N YI Sbjct: 297 LLGKILAEDIVDKETGEVVATANSEINETLLERIKQTQNKNSEISTLFVNDLNYGPYISQ 356 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D++ D+ A + IYR+MRPG+ T ++FN LF+ ++YDLS VGR+K N R+ Sbjct: 357 TLRVDESTDQMSAQVAIYRMMRPGEPPTEDAVLALFNGLFYSPERYDLSVVGRMKFNRRV 416 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 + + EDI +IKILV LRNG+G IDDID+LGNRRVRSVGE+ +NQ+R GL Sbjct: 417 GREELTGSTTLSNEDITDVIKILVGLRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLA 476 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+E+++KER+S + +++MP D INAKPV SA+ EFF SSQLSQ + N LS ITH RR Sbjct: 477 RVEKAVKERLSQAESENLMPHDFINAKPVSSAIREFFGSSQLSQFMDQTNPLSEITHKRR 536 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGFIET Sbjct: 537 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNEYGFIET 596 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR V + +VT +VVYLSA+EE IAQAN++ D+ G FT+E+V CR E L R++ Sbjct: 597 PYRMVKNSRVTEEVVYLSAIEESQYVIAQANANFDQTGVFTDEVVSCRHKNEFTLASRDQ 656 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 I+++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+AE P VGTG+E VVA Sbjct: 657 IEYVDIAPAQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKPLVGTGIERVVA 716 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA RIVIR + + GVDIY L K+ RSNQNT +NQRP Sbjct: 717 VHSGTAVKALRGGVVDYVDAGRIVIRVHDAETRAGEVGVDIYNLTKYIRSNQNTNINQRP 776 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK+GD + R D+IADG STDLG+LALG+NML+AFMPW+G NFEDS+LISER+VS+D FT Sbjct: 777 IVKIGDILSREDVIADGASTDLGELALGQNMLIAFMPWNGLNFEDSILISERVVSDDRFT 836 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE ++RDTKLG EE+T DIPN+SE +DE GI+ +GAEV GD+LVGK+TP Sbjct: 837 SIHIEELTAVSRDTKLGTEEVTADIPNLSERQRARLDESGIVYIGAEVEAGDVLVGKVTP 896 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 K E+ +TPEEKLLRAIFGEKA DV+DTSL VP+G+SGTV+DV+IF R G+D+++RS + Sbjct: 897 KSETQLTPEEKLLRAIFGEKASDVKDTSLHVPAGISGTVIDVQIFTREGVDRDKRSKQII 956 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 +++ +D D+ I++ + + R +L G+ A GPK K++ ++ + + + Sbjct: 957 ADELGRFKKDLADQMRIVEADAFQRAKRLLAGKVAAGGPKKLAKNSTITQEYLESVEKHH 1016 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ + DE +E +K + + + F+ K K+ GD++PPGV ++VKV++A+ Sbjct: 1017 WFDIRLIDENTSLQLEQIKDSLVQKRKLFDLAFEEKQRKLSQGDELPPGVQKMVKVYIAV 1076 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +QSGDKMAGRHGNKG++S+I+P EDMP++ DGTPVD+VLNPLGVPSRMN+GQ+ E H Sbjct: 1077 KRRLQSGDKMAGRHGNKGVISKIVPVEDMPYMADGTPVDVVLNPLGVPSRMNIGQVLEVH 1136 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLGKKI ++ + D S +R FL K+ E + DD +L +A+ Sbjct: 1137 LGWAAKGLGKKINEMLISQR---DASEIRDFLSKIYSDNGKQEDLVSLDDKEILELAKNL 1193 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 GVP +TPVFDGA E I ML++ADL ESGQ+ LYDG TGE FDR VTVGY+++LKL+ Sbjct: 1194 SDGVPFATPVFDGAHESEIKHMLKLADLPESGQTTLYDGRTGEAFDRLVTVGYMHVLKLH 1253 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1254 HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1313 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV GRT+VYESIV G+ + G PESFNVLVKE+++LGL IDLE Sbjct: 1314 DVNGRTKVYESIVKGDHKIDAGMPESFNVLVKEIRSLGLDIDLEQ 1358 >gi|300702765|ref|YP_003744366.1| RNA polymerase subunit beta [Ralstonia solanacearum CFBP2957] gi|299070427|emb|CBJ41722.1| RNA polymerase, beta subunit [Ralstonia solanacearum CFBP2957] Length = 1368 Score = 1654 bits (4283), Expect = 0.0, Method: Composition-based stats. Identities = 704/1376 (51%), Positives = 963/1376 (69%), Gaps = 20/1376 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL +++ +R EGLQAAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHVSVAQRKTEGLQAAFNAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A +EFVSY P FDV +C R LT+ L+ +RLI+ D + T + Sbjct: 61 FPIVSHNGLARMEFVSYHLSHPPFDVKECQQRGLTFHSALRAKVRLIINDRENPT---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+IKEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEIKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L ++G+ E+IL+ F+ ++ + Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKS 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L G + D G+ VIE K++ + ++ L G K + + D Sbjct: 238 DGALMEFVPERL-RGEVARFDISD-KNGKVVIEKDKRINAKHIRDLDAAGTKLISVPEDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D + E LE++ + +++I LY + ++ Y+ TL Sbjct: 296 LLGRVLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKEIQTLYTNDLDQGPYMSQTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD D+ A + IYR+MRPG+ T E++F LF+ D YDLS VGR+K+N RLN Sbjct: 356 RTDDTVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYDLSRVGRMKVNSRLNR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DI+ IK+LV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 SEGIGPMVLTDDDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRIS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A++N YGF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNDYGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPREK 660 RKV + K+T++V YLSA+EE +AQAN+++D+DG+ +ELV R E +V ++ Sbjct: 596 RKVENSKLTDEVHYLSAIEEGKYVVAQANATVDKDGNLVDELVSAREGSERETRMVTPDR 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + +ID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 656 VQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGIERTVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 716 VDSGTAVQATRGGVVDYVDANRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VKVGD V R D+IADG STD+G+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 776 MVKVGDIVARGDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N++E L +DE GI +GAEV GD+LVGK+TP Sbjct: 836 SIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVLVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R G+ +++R+ S+ Sbjct: 896 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVTRDKRAQSII 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 E+++ D +D+ I++ + + RL +L G+ A GPK K T L+ + +++ + Sbjct: 956 DEELKRYRLDLNDQLRIVEGDAFQRLERLLVGKVANGGPKKLSKGTALTKEYLADLDKWH 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ DE+V +E++K E + + F+ K +K+ GD++PPGV+++VKV++A+ Sbjct: 1016 WFDIRPSDEEVAAQLEAVKEAIEQKRHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAV 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1076 KRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG++I +++ KA + +R L ++ E + D VL +AE Sbjct: 1136 LGWAARGLGERIGNML---KAQAKAAEIRKLLGQIYNESGKVEDLDSLSDAEVLELAENL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQS----------ILYDGLTGEPFDRPVT 1250 K GVP +TPVFDGA E+ I ML +A + + L+DG TGE F+RPVT Sbjct: 1193 KKGVPFATPVFDGAHEDEIRRMLDLAYPADIAKEKGLTASKQQVTLFDGRTGEAFERPVT 1252 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 +G ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YV Sbjct: 1253 LGVMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYV 1312 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 LQEMLT+KSDDV GRT+VYE+IV G + + G PESFNVLVKE+++LG+ IDLE + Sbjct: 1313 LQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLERN 1368 >gi|254521295|ref|ZP_05133350.1| DNA-directed RNA polymerase, beta subunit [Stenotrophomonas sp. SKA14] gi|219718886|gb|EED37411.1| DNA-directed RNA polymerase, beta subunit [Stenotrophomonas sp. SKA14] Length = 1384 Score = 1654 bits (4282), Expect = 0.0, Method: Composition-based stats. Identities = 701/1390 (50%), Positives = 969/1390 (69%), Gaps = 35/1390 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL N+ P +R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENVDPAKRTDHGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI ++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PIASYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT++GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EE+L+ F+ + D Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G + L D D + ++E+GK++T+ +K L+ G+ L + D + Sbjct: 241 EGVQLELVPERLRGETLGFDLADGD--KVIVEAGKRITARHIKQLEASGIAALAVPDDYI 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+ TGE+ +A D I ++ L+ + + + L+V+ ++ Y+ NTL Sbjct: 299 VGRILSHDVVDASTGELLAQANDEITDEQLQSFRKAGVDAVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLS VGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + +IK+L ++RNG+G +DDID+LGN Sbjct: 419 ETTGEAVLYDRKYYGERNDEESKRLVAAHGDSSDILDVIKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL +AR N YGF+ETPYRKV DGKV ++V +LSA+EE IAQAN+ + D T Sbjct: 599 LINSLAVYARTNQYGFLETPYRKVVDGKVYDEVEFLSAIEENEYVIAQANALTNADSVLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VSIAA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRFQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD-PSTSGVD 760 P L+A+ P VGTG+E VA+ SG + A+R G + Q+DA RIV++ E ++ + +GVD Sbjct: 719 PTLRAQKPLVGTGIERAVARDSGVTVNARRGGEIVQIDAARIVVKVNEEEIVGATDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV+VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLVKYTRSNQNTCINQRPLVQVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY RL + G+ G Sbjct: 959 DVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYMRLRSQIVGKVVNGG-A 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 G KK V+S + ++ W+ ++DE +E + Q + + E RF +K KI Sbjct: 1018 GLKKGDVISDAFLDGLKKADWFALRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G VDI Sbjct: 1078 TAGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGETVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI++++ +A ++ LR FL+ + Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQAMM---EAQAAVADLRKFLDDIYNHDD 1194 Query: 1181 ----HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 + +S + D+ +LR+A GVP++TPVFDGA E I ML +ADL SGQ+ L Sbjct: 1195 TNVANRVDLSQFSDEELLRLARNLTDGVPMATPVFDGATEAEIKRMLELADLPSSGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGRTGEAFDRHTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLENS 1366 L ++++LE++ Sbjct: 1375 LAINMELEDN 1384 >gi|253987832|ref|YP_003039188.1| DNA-directed RNA polymerase subunit beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779282|emb|CAQ82443.1| DNA-directed RNA polymerase beta chain [Photorhabdus asymbiotica] Length = 1342 Score = 1654 bits (4282), Expect = 0.0, Method: Composition-based stats. Identities = 707/1364 (51%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQNGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG++ L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGSSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L A+ +EEIL+ F+ K ++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMDYSTEEILNLFFSKTIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ V + + + Sbjct: 235 NRLQMTLVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVNRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA D ++ TGEI A + L + + + I L+ + +++ AYI TL Sbjct: 292 IAGKVVARDYIDVNTGEIICAANMELSLDLLARLSQAGHKSIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L+ Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLSR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEVEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ YLSA+EE N IAQAN+ LD++G F E+L+ CR GE L RE+++ Sbjct: 592 RLVRDGVVTDEIHYLSAIEEGNFVIAQANTVLDDEGHFVEDLITCRNFGESSLFNREQVE 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + + V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLAEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + +++R+ +L + ++ + + PR +W Sbjct: 952 QLRQAKKDLTEELQIFEAGLFARIRSVLVSGG-------------IEAEKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K+ E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLADEEKQNQLEQLAEQYDELKAEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + ++ + D+ VLR+AE K Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQKAYDLGDETRQKVDLNTFSDEEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ DL SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEKEIKELLKLGDLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|323527610|ref|YP_004229763.1| DNA-directed RNA polymerase subunit beta [Burkholderia sp. CCGE1001] gi|323384612|gb|ADX56703.1| DNA-directed RNA polymerase, beta subunit [Burkholderia sp. CCGE1001] Length = 1368 Score = 1654 bits (4282), Expect = 0.0, Method: Composition-based stats. Identities = 702/1375 (51%), Positives = 964/1375 (70%), Gaps = 18/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL + +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTPSTQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY PP F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMP 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G +++ K++ + ++ L KF+ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-RDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E LE++ ++I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITETVLEKLREAKIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+ + YLSA+EE IAQAN+++ EDG+ T+ELV R AGE ++V ++I Sbjct: 598 RKVVDGKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRIVIRVNDEEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD+V R D++ADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KVGDKVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLTGKVANGGPKKLAKGTKIEQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE+ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I LR FL K+ E++ + D+ ++ +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEELREFLTKIYNESGRAEELDSFTDEEIVELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDES-----G------QSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE ++ L +A + G Q LYDG TGE F+R VTV Sbjct: 1195 GVPFATPVFDGATEEEMSRALDLA-FPDDIAQNLGMTPSKNQVRLYDGRTGEMFERTVTV 1253 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1254 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1313 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1314 QEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|307731263|ref|YP_003908487.1| DNA-directed RNA polymerase subunit beta [Burkholderia sp. CCGE1003] gi|307585798|gb|ADN59196.1| DNA-directed RNA polymerase, beta subunit [Burkholderia sp. CCGE1003] Length = 1368 Score = 1654 bits (4282), Expect = 0.0, Method: Composition-based stats. Identities = 703/1375 (51%), Positives = 964/1375 (70%), Gaps = 18/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL + +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTPSTQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY PP F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMP 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G +++ K++ + ++ L KF+ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-RDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E LE++ ++I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITETVLEKLREAKIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+ + YLSA+EE IAQAN+++ EDG+ T+ELV R AGE ++V ++I Sbjct: 598 RKVVDGKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRIVIRVNDEEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD+V R D++ADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KVGDKVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLTGKVANGGPKKLAKGTKIEQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE+ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I LR FL K+ E++ + DD ++ +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEELREFLTKIYNESGRAEELDSFTDDEIVELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDES-----G------QSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE ++ L +A + G Q LYDG TGE F+R VTV Sbjct: 1195 GVPFATPVFDGATEEEMSRALDLA-FPDDIAQNLGMTPSKNQVRLYDGRTGEMFERTVTV 1253 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1254 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1313 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1314 QEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|237747359|ref|ZP_04577839.1| DNA-directed RNA polymerase subunit beta [Oxalobacter formigenes HOxBLS] gi|229378710|gb|EEO28801.1| DNA-directed RNA polymerase subunit beta [Oxalobacter formigenes HOxBLS] Length = 1368 Score = 1654 bits (4282), Expect = 0.0, Method: Composition-based stats. Identities = 702/1374 (51%), Positives = 968/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY+ FL ++ P +R NEGLQ+AF S+ Sbjct: 1 MHYSFTEKKRIRKSFAKRDNVHQVPFLLATQLESYEKFLQADVPPLKRKNEGLQSAFTSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEF+SY P FDV +C R LT A PL+ +RL++ D + T + Sbjct: 61 FPIVSHNGFARLEFISYTLGDPPFDVKECQQRGLTLASPLRAKVRLVILDKESPT-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG+LPLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI+ RIDRRRK+PVT L A+GM SEEIL F+ + R Sbjct: 180 RIIPYRGSWLDFEFDPKDILFFRIDRRRKMPVTILLKAIGMSSEEILENFFVFDDFLLRA 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + M G ++D G+ ++E K++ + ++ ++ G+K + + D Sbjct: 240 EGAEMEFVPS-RMRGEIARFDILD-REGKVLVEKDKRINARNIRDIEAAGIKRISVPEDF 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D I E + + + I +I LY + ++ AYI TL Sbjct: 298 LYGRALAKNIVDPDTGEVVARANDEITEDVMARLREAGIEEIQTLYTNDLDQGAYISQTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF++ ++YDLS VGR+K N R+ Sbjct: 358 RIDETVDQMAARIAIYRMMRPGEPPTEESVEALFNGLFYNEERYDLSAVGRMKFNSRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + +DI+++IKILV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DELTGPMTLSNDDILSVIKILVELRNGRGEIDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + D++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D VT+ + YLSA+EE IAQANS +DE+G+ +ELV R AGE ILV E++ Sbjct: 598 RKVIDSHVTDQIEYLSAIEEGRYIIAQANSKIDENGALIDELVSAREAGETILVSPERVQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ + VGTG+E VA Sbjct: 658 YMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPQKALVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ +DA R+V+R + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGVVDYIDAGRVVVRVNDEEAKAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD + + D+IADG STDLG+LALG+N+LVAF PW+G N+EDS+LISE++V +D +TSI Sbjct: 778 KVGDRIAKGDVIADGASTDLGELALGQNLLVAFTPWNGLNYEDSILISEKVVEDDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TP+G Sbjct: 838 HIEELSVVARDTKLGPEEITRDISNLAENQLARLDESGIVYIGAEVEAGDVLVGKVTPRG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R G+ +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGLVRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL ++L G+ GPK + ++ + +++ R W+ Sbjct: 958 ELKRYRIDLNDQMRIVEGDAFQRLSKLLIGKKVNGGPKKLARGAEITQEYLADLERYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 DE ++E++K E + + F+ K +K+ GD++ PGV ++VKV++A+KR Sbjct: 1018 DIRPADEDTAMSLEAIKDSIEEKRHQFDLAFEEKRKKLTQGDELQPGVQKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGTPADIVLNPLGVPSRMNIGQILETHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ +A + +R+FL+++ + E + D + VL +AE K Sbjct: 1138 WASKGLGLRIGEML---QAKQKVEEIRAFLKQIYLSSGKPEDLDDLSETEVLTLAENLKD 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESG----------QSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA+E+ I ML +A D+ Q LYDG TGEPF+RPVTVG Sbjct: 1195 GVPFATPVFDGAEEDEIRRMLDLAYPDDIARKLGMTEMKNQVTLYDGRTGEPFERPVTVG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y +MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YKHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDLE + Sbjct: 1315 EMLTVKSDDVAGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERN 1368 >gi|300690145|ref|YP_003751140.1| RNA polymerase, beta subunit [Ralstonia solanacearum PSI07] gi|299077205|emb|CBJ49831.1| RNA polymerase, beta subunit [Ralstonia solanacearum PSI07] Length = 1368 Score = 1654 bits (4282), Expect = 0.0, Method: Composition-based stats. Identities = 703/1376 (51%), Positives = 961/1376 (69%), Gaps = 20/1376 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL N +R +EGLQAAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQENAPIAQRKSEGLQAAFNAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A +EFVSY P FDV +C R LT+ L+ +RLI+ D + T + Sbjct: 61 FPIVSHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPT---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+IKEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEIKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L ++G+ E+IL+ F+ ++ + Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKT 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L G + D G+ V+E K++ + ++ L G K + + D Sbjct: 238 DGALMEFVPERL-RGEVARFDISD-KNGKVVVEKDKRINAKHIRDLDAAGTKLISVPEDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D + E LE++ + +++I LY + ++ Y+ TL Sbjct: 296 LLGRVLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKEIQTLYTNDLDQGPYMSQTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD D+ A + IYR+MRPG+ T E++F LF+ D YDLS VGR+K+N RLN Sbjct: 356 RTDDTVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYDLSRVGRMKVNSRLNR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DI+ IK+LV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 SEGTGPMVLTDDDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRIS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A++N YGF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNDYGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPREK 660 RKV + K+T+ V YLSA+EE +AQAN+++D+DG+ +ELV R E +V ++ Sbjct: 596 RKVENSKLTDQVDYLSAIEEGKYVVAQANATVDKDGNLVDELVSAREGSERETRMVTPDR 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + +ID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 656 VQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGVERTVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 716 VDSGTAVQATRGGLVDYVDANRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VKVGD V R D+IADG STD+G+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 776 MVKVGDIVARGDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N++E L +DE GI +GAEV GD++VGK+TP Sbjct: 836 SIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVMVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R G+ +++R+ S+ Sbjct: 896 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVTRDKRAQSII 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 E+++ D +D+ I++ + + RL +L G+ A GPK K T L+ + +++ + Sbjct: 956 DEELKRYRLDLNDQLRIVEGDAFQRLERLLLGKVANGGPKKLAKGTALTKEYLADLDKWH 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ D+ V +E++K E + + F+ K +K+ GD++PPGV+++VKV++A+ Sbjct: 1016 WFDIRPADDDVATQLEAVKEAIEQKRHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAV 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1076 KRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG++I +++ KA + +R L ++ E + D VL +AE Sbjct: 1136 LGWAARGLGERIGNML---KAQAKAAEIRKLLGQIYNESGKVEDLDSLTDAEVLELAENL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQS----------ILYDGLTGEPFDRPVT 1250 K GVP +TPVFDGA E+ I ML +A +E + L+DG TGE F+RPVT Sbjct: 1193 KKGVPFATPVFDGAHEDEIRRMLDLAYPEEIAKEKGLTASKQQVTLFDGRTGEAFERPVT 1252 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 +G ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YV Sbjct: 1253 LGVMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYV 1312 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 LQEMLT+KSDDV GRT+VYE+IV G + + G PESFNVLVKE+++LG+ IDLE + Sbjct: 1313 LQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLERN 1368 >gi|222056712|ref|YP_002539074.1| DNA-directed RNA polymerase, beta subunit [Geobacter sp. FRC-32] gi|254765291|sp|B9M6V2|RPOB_GEOSF RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|221566001|gb|ACM21973.1| DNA-directed RNA polymerase, beta subunit [Geobacter sp. FRC-32] Length = 1370 Score = 1653 bits (4281), Expect = 0.0, Method: Composition-based stats. Identities = 730/1364 (53%), Positives = 1006/1364 (73%), Gaps = 11/1364 (0%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK F K +IIDIP+LI++QK SY FL +++ + R GL+A FKSVFPI FS A Sbjct: 11 LRKNFAKIKKIIDIPNLIDIQKNSYKRFLQLDVPAEARKYSGLEAVFKSVFPIKDFSETA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE+VSY PK+DV++C R +T+A P+K+ +RL+V+DV++ +SI+DIKEQ +Y Sbjct: 71 SLEYVSYSLGIPKYDVEECHQRGMTFAAPMKVKVRLVVWDVNKEPSTRSIRDIKEQEVYF 130 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++PLMT++GTF+I G +R++VSQLHRSPG+ +DHDKG+ SGK+LY+ R+IP +G W+ Sbjct: 131 GEIPLMTENGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSARVIPYRGSWL 190 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D EFD KDI++VRIDRRRK+P T L ALG ++E+L+ FY + G+ ++ Sbjct: 191 DFEFDHKDILYVRIDRRRKMPATVLLKALGYSTDELLNFFYKSEEINFAGEKL-TKVADP 249 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 +L+ K + +VD TGE ++++ +K T ++ + E G+KF+ IT + L G + DI Sbjct: 250 ELLTNQKAAIDIVDSATGEVLVKANRKFTKAAIRKMAEHGIKFIPITIEELVGKISSHDI 309 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 V+ TGEI E + + + LEEI I +L++D+++ + R+T++ DK D Sbjct: 310 VDPSTGEIVAECNEELTQAKLEEIKSKGINTFKVLFIDNLHVTSSFRDTIIIDKIGSTDD 369 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 AL++IYR +RPGD T A S+F LFF+ ++YDLS VGR+K+N +L L P D + Sbjct: 370 ALIEIYRRLRPGDPPTLKSALSLFENLFFNPERYDLSAVGRLKLNYKLGLQVPLDCMTLT 429 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 +ED++ +++ L+DL+NG+G IDDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER+S Sbjct: 430 REDVLEVVRYLIDLKNGRGNIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSL 489 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 +++++MP DLIN+KPV + V EFF SSQLSQ + N LS +TH RRLSALG GG+ R Sbjct: 490 QEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRE 549 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+++AR+N +GF+ETPYR V +GKVTN Sbjct: 550 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRLVQEGKVTN 609 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 +V + SA+EEE IAQAN+ +D+DG F + + R +GE +LV R++++ +D +P Q+V Sbjct: 610 EVRFFSALEEEGHAIAQANAEVDKDGRFVADYISARKSGEFVLVGRDELELMDVAPMQLV 669 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S+AASLIPFLENDD+NR LMG NMQRQAVPLL+A++P VGTGME VVA+ SG ++VA+ Sbjct: 670 SVAASLIPFLENDDANRALMGSNMQRQAVPLLRADSPLVGTGMERVVARDSGVSVVARHN 729 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G+VE VDA RIV++ E + D + +GVDIY L+KF RSNQNTC+NQRP+VK+GD V+R D Sbjct: 730 GVVESVDASRIVVKIDEDEYDETGTGVDIYNLIKFARSNQNTCINQRPVVKIGDHVKRGD 789 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 +IADGPSTD+G+LALG+N+LVAFMPW GYNFEDS+LISER+V +D +TSIHIEEFE +AR Sbjct: 790 VIADGPSTDMGELALGQNVLVAFMPWGGYNFEDSILISERLVKDDRYTSIHIEEFECVAR 849 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLG EEIT DIPN+ EE LK++DE GII +GAEV PGDIL+GKITPKGE+ ++PEEKL Sbjct: 850 DTKLGKEEITADIPNLGEETLKDLDESGIIRIGAEVRPGDILIGKITPKGETQLSPEEKL 909 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFGEKA DVRDTSLRVP GV GTV+ +IF+R G DK+ R+ +E+ + + L +D+ Sbjct: 910 LRAIFGEKAGDVRDTSLRVPPGVEGTVIGAKIFSRKGADKDARTELIEQAEEKKLRKDEQ 969 Query: 973 DEQVILDRNIYSRLMEILCGQNA------VSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 DE I+ + S+L ++L G+ A G K +S + +S P +W + +V Sbjct: 970 DEIRIIRESAVSKLKKLLVGKTAAVKVEGKDGKILIVKGKAISEEALSSIPIDRWDEISV 1029 Query: 1027 -QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 DE V + I++ F +K++K++ GDD+PPGV+++VKV++A+KR +Q Sbjct: 1030 ADDESTDDKVAQILSTLNQQIDIIKYVFDDKVQKLKRGDDLPPGVIKMVKVYIAIKRKLQ 1089 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG+VSRILP EDMP+L+DG PV+IVLNPLGVPSRMNVGQI ETHLGWA Sbjct: 1090 VGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVEIVLNPLGVPSRMNVGQILETHLGWAA 1149 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 G+G +I+ ++ + N + + ++++L++V G + + DD+ + VA++ K GVP Sbjct: 1150 KGIGWQIEEML---EKNSEKTKIKTYLKEVYGNKEMNKFLDTLDDEELSNVAKRLKRGVP 1206 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 +++PVF+G+ EE I ML A + Q LYDG +G+ F VTVG +Y+LKL+H+V D Sbjct: 1207 MASPVFEGSSEEGIREMLGKAGFAHTAQVTLYDGKSGDAFKHKVTVGVMYVLKLHHLVDD 1266 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDDV GR Sbjct: 1267 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVAGR 1326 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 TR+YE+IV G T E G PESFNVL+KE+Q+LGL ++L + Sbjct: 1327 TRMYEAIVKGKHTLEPGLPESFNVLIKELQSLGLDVELLENEED 1370 >gi|297182726|gb|ADI18882.1| DNA-directed RNA polymerase, beta subunit/140 kd subunit [uncultured Pseudomonadales bacterium HF0010_05E14] Length = 1380 Score = 1653 bits (4280), Expect = 0.0, Method: Composition-based stats. Identities = 709/1388 (51%), Positives = 971/1388 (69%), Gaps = 32/1388 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK P +D+P L+ +Q SY F + + +ER + GL AA KSV Sbjct: 1 MTYSFTEKKRIRKNFGKLPNTMDLPYLLSIQLDSYQKFTQIGLDDNERTDTGLHAALKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +SG A LE+V Y+ P F+ ++C R +T++VPL++ +RLI++D D + +K++ Sbjct: 61 FPIIGYSGNAALEYVDYKLGSPAFEEEECKLRGVTFSVPLRVRVRLIIYDKD--SASKAV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ +Y+G++PLMT +GTF+I G +R++VSQLHRSPG+ FDHDKG+ SGKLLY Sbjct: 119 KDIREQEVYLGEIPLMTDNGTFIINGTERVIVSQLHRSPGVIFDHDKGKTHSSGKLLYTA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD+++VRIDRRRK+P T L ALG SEEIL+ F+ V+S + Sbjct: 179 RVIPYRGSWLDFEFDPKDLLYVRIDRRRKLPSTILLRALGYSSEEILNMFFDTNVFSVKK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + L L G + ++ + V+E G+++T+ ++ L++ + L + + Sbjct: 239 DQFSLALDPERL-RGEIAAFAIKGKQN-KVVVEKGRRITARHIRQLEKDKISSLQVPREY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G VA DI + +TGE+ +E I +++L+ + + + I LY + ++ +I +TL Sbjct: 297 LIGRPVAMDIADEKTGELMLECNTEISDENLDALLKAGVTRIETLYTNDLDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 +D K + +A+++IYR+MRPG+ T AE++F+ LFF+ ++YDLS VGR+K N RL+ Sbjct: 357 RSDATKTQLEAMVEIYRMMRPGEPPTKESAENLFHNLFFNEERYDLSAVGRMKFNRRLDR 416 Query: 423 DTPDDVRHIRKEDI----------------------IAIIKILVDLRNGKGTIDDIDNLG 460 + I++++ L+ +RNGKG++DDID+LG Sbjct: 417 HDESGPGILYDHRYLLQNKAEECAELIEQFGDASDIISVMQKLISIRNGKGSVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRR+RSVGEM +NQ+R+GL+R+ER++KER+ + + +MPQDL+NAKPV +A+ EFF SS Sbjct: 477 NRRIRSVGEMAENQFRVGLVRVERAVKERLGVAESEGLMPQDLVNAKPVAAAMKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL S+AR N YGFIETPYRKV DG+VT+++ YLSA+ E IAQA++S+DE G+F Sbjct: 597 GLINSLASYARTNDYGFIETPYRKVIDGRVTSEIEYLSAINESQFVIAQASASIDEKGNF 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 ++LV R E ID++D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 KDDLVAVRHLNEFTSKNPTDIDYMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+AE P VGTG+E VA SG VA R G VE VDA RIV+R + +GVD Sbjct: 717 VPTLRAETPLVGTGIERKVASDSGVCKVALRGGYVESVDAGRIVVRVDHNETQAGEAGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY+L K+ RSNQNTC++Q+P+V+ GD V + D++ADGPS DLG+LALG+NM +AFMPW+G Sbjct: 777 IYKLTKYTRSNQNTCIDQKPIVRQGDVVSKGDVLADGPSVDLGELALGQNMRIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+LISER+V ED FT+IHI+E +ARDTKLG EEIT DIPNV E L +DE G Sbjct: 837 YNFEDSILISERVVQEDRFTTIHIQELSCVARDTKLGSEEITADIPNVGEAALGRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV+ GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPS + GTV+ Sbjct: 897 IVHIGAEVSAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSSIKGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R G++K++RSI +E ++ +D +DE I++ +RL +++ + + K Sbjct: 957 DVQVFTRDGLEKDQRSIDIESAALDQFKKDLNDEYRIVENATLARLSDLIKNKKVMKA-K 1015 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 GFKK +E+ W +++ ++ + + Q E K+ ++ RF+ K EK+ Sbjct: 1016 GFKKGDKFDLKKCAEFSVEDWMAIRMENPEINEQISEMSGQLELQKTAIDSRFEAKREKL 1075 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 Q GDD+ PGVL+ VKV++A+KR IQ GDKMAGRHGNKG++S I P EDMP + G PVDI Sbjct: 1076 QSGDDLSPGVLKTVKVYLAVKRRIQPGDKMAGRHGNKGVISVIKPVEDMPHDEHGEPVDI 1135 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMNVGQ+ E H+G A GLG + +I N S +R F++K+ G Sbjct: 1136 VLNPLGVPSRMNVGQVLEVHMGLAAKGLGDAVNQMI---AKNSKASDMRDFMQKIYNIGD 1192 Query: 1181 --HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYD 1238 ++D DD VL +A K GVP++TPVFDGA E + ML +A L ESGQ L+D Sbjct: 1193 TVFGTDLTDLSDDEVLELANNLKHGVPIATPVFDGAHESELKKMLSLAGLPESGQMTLFD 1252 Query: 1239 GLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEME 1298 G TG+ FDRPVTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEME Sbjct: 1253 GRTGDKFDRPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1312 Query: 1299 VWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALG 1358 VW ++AYGA+Y LQEMLT+KSDDV GRT++Y++IV G+ E G PESFNVLVKE+++LG Sbjct: 1313 VWALEAYGASYTLQEMLTVKSDDVAGRTKMYKNIVDGDHRMEPGMPESFNVLVKEVRSLG 1372 Query: 1359 LSIDLENS 1366 ++++LEN Sbjct: 1373 INMELEND 1380 >gi|91785473|ref|YP_560679.1| DNA-directed RNA polymerase subunit beta [Burkholderia xenovorans LB400] gi|122970100|sp|Q13TG2|RPOB_BURXL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|91689427|gb|ABE32627.1| DNA-directed RNA polymerase subunit beta [Burkholderia xenovorans LB400] Length = 1368 Score = 1652 bits (4279), Expect = 0.0, Method: Composition-based stats. Identities = 702/1374 (51%), Positives = 964/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL + + +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY PP F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMP 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G +++ K++ + ++ L KF+ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-RDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E LE++ S+I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++ EDGS T+ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYVIAQANAAVAEDGSLTDELVSSREAGETLMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRMVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD V R D++ADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KVGDIVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLTGKVANGGPKKLAKGTKIEQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE+ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I+ LR FL K+ E++ + DD ++ +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIAELREFLTKIYNESGRAEELDSFTDDEIVELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQ----------SILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE ++ L +A D+ + LYDG TGE F+R VTVG Sbjct: 1195 GVPFATPVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQVRLYDGRTGEMFERTVTVG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|78221839|ref|YP_383586.1| DNA-directed RNA polymerase subunit beta [Geobacter metallireducens GS-15] gi|109903820|sp|Q39Y13|RPOB_GEOMG RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|78193094|gb|ABB30861.1| DNA-directed RNA polymerase subunit beta [Geobacter metallireducens GS-15] Length = 1370 Score = 1652 bits (4279), Expect = 0.0, Method: Composition-based stats. Identities = 738/1364 (54%), Positives = 1014/1364 (74%), Gaps = 11/1364 (0%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +R+ F K +IIDIP+LI++QK SY FL ++ P+ R N GL+A FKSVFPI FS A Sbjct: 11 LRQNFAKIKKIIDIPNLIDIQKNSYKRFLQIDTPPEARKNSGLEAVFKSVFPIKDFSDTA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE+VSY PK+DV++C R +T+A P+K+ +RL+V+DV++ TG +SI+DIKEQ +Y Sbjct: 71 SLEYVSYSLGTPKYDVEECHQRGMTFAAPMKVKVRLVVWDVNKDTGVRSIRDIKEQEVYF 130 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++PLMT++GTF+I G +R++VSQLHRSPG+ +DHDKG+ SGK+LY+ R+IP +G W+ Sbjct: 131 GEIPLMTENGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSARVIPYRGSWL 190 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D EFD KDI++VRIDRRRK+P T L ALG +EE+L+ +Y G+ A Sbjct: 191 DFEFDHKDILYVRIDRRRKMPATVLLKALGNSAEELLNFYYRSEEIGLDGERMWKKADAE 250 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 L+ K SS +VD TGE +I++ +K T ++ + E G+ + I ++ +CG Y + DI Sbjct: 251 -LLTTQKTSSDIVDSKTGEVIIKANRKFTKAAIRKMTEHGITEIPIKAEEVCGKYASTDI 309 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 V+ TGE+ +E + I + L+EI I + +L++D+++ + +R+TL+ DK D Sbjct: 310 VDPATGEVLVECNEEISQAKLDEIKARGISEFKVLFIDNLHVTSSLRDTLLVDKINTTDD 369 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 AL++IYR +RPGD T A+++F+ LFF++++YDLS VGR+K+N +L L P D + + Sbjct: 370 ALIEIYRRLRPGDPPTLKSAQALFDNLFFNAERYDLSAVGRLKLNYKLGLGVPLDCQVLT 429 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 KEDI+ +++ L+DL+NG+GTIDDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER+S Sbjct: 430 KEDILEVVRYLIDLKNGRGTIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSL 489 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 +++++MP DLIN+KPV + V EFF SSQLSQ + N LS +TH RRLSALG GG+ R Sbjct: 490 QEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRE 549 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+++AR+N +GF+ETPYR V +GKVT Sbjct: 550 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRIVSEGKVTA 609 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 +V + SA+EEE IAQAN+ +D DG F + V R +GE +LV R++++ +D +P Q+V Sbjct: 610 EVKFFSALEEEGHAIAQANAEMDADGRFVNDYVSARKSGEFLLVHRDELELMDVAPMQLV 669 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S+AASLIPFLENDD+NR LMG NMQRQAVPLLKA++P VGTGME VVAK SG ++VA+ Sbjct: 670 SVAASLIPFLENDDANRALMGSNMQRQAVPLLKADSPLVGTGMERVVAKDSGVSVVARHT 729 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G+VE VDA RIV++ E + D + +GVDIY L+KF RSNQNTC+NQRP+VKVGD V+R D Sbjct: 730 GVVESVDASRIVVKIDEDEYDETGTGVDIYNLIKFARSNQNTCINQRPVVKVGDHVKRGD 789 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 +IADGPSTD+G+LALG+N++VAFMPW GYNFEDS+LISE++ +D +TSIHIEEFE +AR Sbjct: 790 VIADGPSTDMGELALGQNVVVAFMPWGGYNFEDSILISEKLTKDDRYTSIHIEEFECVAR 849 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLG EEIT DIPN+ EE LK++DE GII +GAEV PGDI+VGKITPKGE+ ++PEEKL Sbjct: 850 DTKLGKEEITSDIPNLGEETLKDLDESGIIRIGAEVKPGDIMVGKITPKGETQLSPEEKL 909 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFGEKA DVRDTSLRVP GV GTV+ ++F+R G DK+ R+ +ER + E L +D+ Sbjct: 910 LRAIFGEKAGDVRDTSLRVPPGVEGTVIGAKVFSRKGNDKDSRTEMIERMEEEKLRKDEQ 969 Query: 973 DEQVILDRNIYSRLMEILCGQNA------VSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 DE I+ + +L +L G+ A +G K ++ + ++ P +W + +V Sbjct: 970 DEIRIIRDSAVGKLKRLLVGKTAAVKVEDKNGKTVIAKDAAITEEALTAIPLDRWDEISV 1029 Query: 1027 Q-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 E V+ V ++ + I++ F +K++K++ GDD+PPGV+++VKV++A+KR +Q Sbjct: 1030 SGGEGVEEKVAAILATLQQQIDIIKYVFDDKVQKLKRGDDLPPGVIKMVKVYIAIKRKLQ 1089 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG+VSRILP EDMP+++DG PV+IVLNPLGVPSRMNVGQI ETHLGWA Sbjct: 1090 VGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQILETHLGWAA 1149 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 G+G KI+ ++ + + I + +L+KV G+ + +++ ++ VA++ + GVP Sbjct: 1150 KGIGWKIEEMLEKHSPSATI---KEYLQKVYGSKEMNAFLDSLNEEELINVAKRLQRGVP 1206 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 +++PVF+GA EE I SML A DE+ Q L+DG TGEPF VTVG +Y+LKL+H+V D Sbjct: 1207 MASPVFEGASEEQIRSMLDKAGFDETAQVRLFDGKTGEPFKHKVTVGVMYVLKLHHLVDD 1266 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDDV GR Sbjct: 1267 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVAGR 1326 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 TR+YE+IV G T E G PESFNVL+KE+Q+L L ++L Sbjct: 1327 TRMYEAIVKGKHTLEPGLPESFNVLIKELQSLCLDVELLEGDED 1370 >gi|37524448|ref|NP_927792.1| DNA-directed RNA polymerase subunit beta [Photorhabdus luminescens subsp. laumondii TTO1] gi|41017640|sp|Q7N9A4|RPOB_PHOLL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|36783872|emb|CAE12734.1| RNA polymerase, beta subunit [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1342 Score = 1652 bits (4279), Expect = 0.0, Method: Composition-based stats. Identities = 709/1364 (51%), Positives = 968/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQNGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG++ L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGSSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L A+ +EEIL+ F+ K ++ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMNYSTEEILNLFFSKTIFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ V + + + Sbjct: 235 NRLQMTLVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDEVNRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA D ++ TGEI A + L + S + I L+ + +++ AYI TL Sbjct: 292 IAGKVVARDYIDVNTGEIICAANMELSLDLLARLSQSGHKSIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L+ Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLSR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEVEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ YLSA+EE N IAQAN+ LD++G F E+L+ CR GE L RE+++ Sbjct: 592 RLVRDGVVTDEIHYLSAIEEGNFVIAQANTVLDDEGHFVEDLITCRNYGESSLFNREQVE 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + +++R+ +L + ++ + + PR +W Sbjct: 952 QLRQAKKDLTEELQIFEAGLFARIRSVLIAGG-------------IEAEKLDKLPRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K+ E + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLADEEKQNQLEQLAEQYDELKAEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + + +S + D+ V+R+AE K Sbjct: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQKAYNLGDETRQKVDLSTFSDEEVMRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ DL SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEKEIKELLKLGDLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEGE 1342 >gi|186477596|ref|YP_001859066.1| DNA-directed RNA polymerase subunit beta [Burkholderia phymatum STM815] gi|226699382|sp|B2JIH4|RPOB_BURP8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|184194055|gb|ACC72020.1| DNA-directed RNA polymerase, beta subunit [Burkholderia phymatum STM815] Length = 1368 Score = 1652 bits (4279), Expect = 0.0, Method: Composition-based stats. Identities = 701/1375 (50%), Positives = 969/1375 (70%), Gaps = 18/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL + +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQAEVPTAQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY PP F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMP 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ K++ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-RDGKVIVQKDKRINAKHIRDLENAKTKYISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D + E L+++ ++I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEVTESVLDKLREAKIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ + YDLS VGR+K N R+ Sbjct: 358 RIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+ + YLSA+EE IAQAN+++ EDG+ T+ELV R AGE ++V ++I Sbjct: 598 RKVTDGKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 718 SGTTVQALRGGVVDYVDAGRIVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIA 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD+V R D++ADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KVGDKVARGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLEGKVANGGPKKLAKGTKIERAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE+ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I +R+FL K+ E++ + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQARIEEVRAFLTKIYNESGRAEELESFSDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDES-----G------QSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE ++SML +A + G Q LYDG TGE F+R VTV Sbjct: 1195 GVPFATPVFDGATEEEMSSMLDLA-FPDDIAQNLGMTKSKNQVRLYDGRTGEAFERTVTV 1253 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1254 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1313 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1314 QEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|167564424|ref|ZP_02357340.1| DNA-directed RNA polymerase subunit beta [Burkholderia oklahomensis EO147] gi|167571570|ref|ZP_02364444.1| DNA-directed RNA polymerase subunit beta [Burkholderia oklahomensis C6786] Length = 1368 Score = 1652 bits (4278), Expect = 0.0, Method: Composition-based stats. Identities = 694/1374 (50%), Positives = 967/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q S+ FL ++ +R +EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRSIVHQVPFLLATQLESFSTFLQADVLTAQRKSEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ K++ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-REGKVIVQKDKRINAKHIRDLEAAKTKYISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E LE++ ++I++I LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITEGVLEKLREAKIKEIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RVDETVDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++D++G +ELV R AGE ++V ++I Sbjct: 598 RKVADSKVTDQIDYLSAIEEGRYMIAQANAAIDDNGQLVDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + + LR+FL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQVKLEELRAFLTKIYNESGRAEDLDSFSDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMA---------DLDES-GQSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE ++ ML +A ++ S Q LYDG TGE F+R VT+G Sbjct: 1195 GVPFATPVFDGATEEEMSKMLDLAFPDEIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|91774628|ref|YP_544384.1| DNA-directed RNA polymerase subunit beta [Methylobacillus flagellatus KT] gi|122400331|sp|Q1H4P4|RPOB_METFK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|91708615|gb|ABE48543.1| DNA-directed RNA polymerase subunit beta [Methylobacillus flagellatus KT] Length = 1390 Score = 1652 bits (4278), Expect = 0.0, Method: Composition-based stats. Identities = 703/1397 (50%), Positives = 962/1397 (68%), Gaps = 40/1397 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + ++P L+ +Q SY FL + D+R + GLQAAF SV Sbjct: 1 MSYSFTEKKRLRKSFAKRESVQEVPYLLAMQLESYAAFLQADTPADKRTDTGLQAAFSSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A L+FVSY FDV +C R LTYA PL++ +RL + D ++ Sbjct: 61 FPIVSHSGNARLDFVSYNLGQEPFDVKECQQRGLTYAAPLRVKVRLTIMDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG+LPLMT++G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGELPLMTENGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ R+DRRRK+PVT L ALG E+IL TFY + Sbjct: 179 RIIPYRGSWLDFEFDPKDYLYFRVDRRRKMPVTILLKALGFTPEQILETFYDFDTFHIAK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 F L L G ++D D G+ ++ K++T ++ +++ G+ + + + Sbjct: 239 KGVQFELVPERL-RGEVAKFDILDKD-GKVIVAKDKRITVKHIRDMEKSGISKITVPEEF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A IV+ TGEI A D + E L+++ +++ I LY + +++ YI TL Sbjct: 297 LLGRSLAAGIVDKTTGEIIANANDEVTESLLDKLREADVNKINTLYANDLDHGDYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D A + IYR+MRPG+ T +++F LFF+ D+YDLS VGR+K N R Sbjct: 357 RIDEIPDEYSARVAIYRMMRPGEPPTEEAVQALFEGLFFNEDRYDLSAVGRMKFNRRAFP 416 Query: 423 DT--------------------PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNR 462 + + + +DI+A+I +L++LRNG+G IDDID+LGNR Sbjct: 417 EKIEERTAAWLRRFYEKVGPQGAEGPGTLSNDDILAVIAVLIELRNGRGEIDDIDHLGNR 476 Query: 463 RVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQL 522 R+RSVGE+ +NQ+R GL+R+ER++KER+S + D++MP DLINAKPV SA+ EFF SSQ Sbjct: 477 RIRSVGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPVSSAIREFFGSSQP 536 Query: 523 SQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGL 582 SQ + N LS ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL Sbjct: 537 SQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHSTHYGRVCPIETPEGPNIGL 596 Query: 583 VSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE 642 ++SL ++R N YGF+ETPYR+V D KV++ + YLSA+EE IAQANS LD+DG F E Sbjct: 597 INSLALYSRTNQYGFLETPYRRVADNKVSDQIDYLSAIEESQYMIAQANSELDQDGRFKE 656 Query: 643 ELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP 702 +LV R E + +++ ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP Sbjct: 657 DLVSARYHNEFTMAQPDRVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVP 716 Query: 703 LLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 L+AE VGTG+E VA SG + A+R G+V+ VD+ RIV+R + + GVDIY Sbjct: 717 CLRAEKALVGTGIERTVAVDSGTVVTARRGGVVDYVDSSRIVVRVHDEEAAAGEVGVDIY 776 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 L+K+ RSNQNT +NQRPLV VGD + R D+IADG STD+G+LALG+NMLVAFMPW+GYN Sbjct: 777 NLIKYTRSNQNTNINQRPLVNVGDVLARGDVIADGASTDMGELALGQNMLVAFMPWNGYN 836 Query: 823 FEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGII 882 FEDS+LISER+V++D +TSIHIEE V+ARDTKLG EEITRDI N+SE L +DE GII Sbjct: 837 FEDSILISERVVADDRYTSIHIEELSVVARDTKLGAEEITRDISNLSERMLGRLDESGII 896 Query: 883 CVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDV 942 +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV Sbjct: 897 YIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDV 956 Query: 943 RIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 ++F R GI+++ R+ + +Q+ +D D+ I++ + + R+ ++ G+ A GP+ Sbjct: 957 QVFTREGIERDARAQQIIDDQLADYKQDLADQMRIVEDDAFGRIRRLIEGKVATGGPQKL 1016 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 KK ++++ + R W+ + DE V R +E L+ ++ + +F+ K K+ Sbjct: 1017 KKGETVTAEYLDGLARYDWFDIRLSDEDVARQLEQLRDSLSQARIEFDSKFEEKKRKLTQ 1076 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++PPGV ++VKV++A+KR IQ GDKMAGRHGNKG+VS+I+P EDMP + DGTP+DIVL Sbjct: 1077 GDELPPGVQKMVKVYLAVKRRIQPGDKMAGRHGNKGVVSKIVPIEDMPHMADGTPMDIVL 1136 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG-SH 1181 NPLGVPSRMN+GQI E HLGWA GLG +I +++ +A + LR FLE+V Sbjct: 1137 NPLGVPSRMNIGQILEVHLGWAAKGLGIRIGNML---QAQAKAAELRDFLEQVYNKSNGK 1193 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES---------- 1231 +E I+ DD V+ +A+ +SGVP +TPVFDGA E I +ML +A D+ Sbjct: 1194 SEDIASLSDDEVIDLAKNLRSGVPFATPVFDGATEADIKAMLDLAFPDDDPRTQQLQFAS 1253 Query: 1232 GQS--ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNR 1289 G++ L+DG TG+ F+RPVTVGY+++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 GKTQVTLFDGRTGDAFERPVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQF 1313 Query: 1290 GGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV GRT+VYE+IV G + G PESFNV Sbjct: 1314 GGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVTGRTKVYENIVKGEHKIDAGMPESFNV 1373 Query: 1350 LVKEMQALGLSIDLENS 1366 LVKE+++L + IDL+ + Sbjct: 1374 LVKEIRSLAIDIDLDRN 1390 >gi|167838219|ref|ZP_02465078.1| DNA-directed RNA polymerase subunit beta [Burkholderia thailandensis MSMB43] Length = 1368 Score = 1652 bits (4278), Expect = 0.0, Method: Composition-based stats. Identities = 700/1375 (50%), Positives = 964/1375 (70%), Gaps = 18/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q S+ FL ++ P +R +EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRSIVHQVPFLLATQLESFSTFLQADVLPAQRKSEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D E + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVLLDK-ESPNKPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPELILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ K++ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-REGKVIVQKDKRINAKHIRDLETAKTKYISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E LE++ ++I++I LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITEGVLEKLREAKIKEIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ DR A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RVDETVDRTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++ EDG+ +ELV R AGE ++V ++I Sbjct: 598 RKVADSKVTDQIDYLSAIEEGRYMIAQANAAIGEDGTLVDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGVVDYVDAGRIVIRVNDDEAAAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I LR FL K+ E + + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIEELRVFLTKIYNESGRAEDLESFTDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDES-----------GQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE ++ ML +A + Q LYDG TGEPF+R VT+ Sbjct: 1195 GVPFATPVFDGATEEEMSKMLDLA-FPDDIAEQLDMNPSKNQVRLYDGRTGEPFERRVTL 1253 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1254 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1313 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1314 QEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|17547753|ref|NP_521155.1| DNA-directed RNA polymerase subunit beta [Ralstonia solanacearum GMI1000] gi|41017774|sp|Q8XUZ8|RPOB_RALSO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|17430058|emb|CAD16743.1| probable dna-directed rna polymerase beta chain (rnap betasubunit) (transcriptase beta chain) (rna polymerase beta subunit) protein [Ralstonia solanacearum GMI1000] Length = 1368 Score = 1652 bits (4278), Expect = 0.0, Method: Composition-based stats. Identities = 704/1377 (51%), Positives = 961/1377 (69%), Gaps = 22/1377 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL + + +R +EGLQAAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHASVAQRKSEGLQAAFNAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A +EFVSY P FDV +C R LT+ L+ +RLI+ D + T + Sbjct: 61 FPIVSHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPT---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+IKEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEIKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L ++G+ E+IL+ F+ ++ + Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKS 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L G + D G+ V+E K++ + ++ L G K + + D Sbjct: 238 DGALMEFVPERL-RGEVARFDISD-KNGKVVVEKDKRINAKHIRDLDAAGTKLISVPEDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D + E LE++ + +++I LY + ++ Y+ TL Sbjct: 296 LLGRVLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKEIQTLYTNDLDQGPYMSQTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD D+ A + IYR+MRPG+ T E++F LF+ D YDLS VGR+K+N RLN Sbjct: 356 RTDDTVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYDLSRVGRMKVNSRLNR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DI+ IK+LV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 SEGTGPMVLTDDDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRIS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A++N YGF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNDYGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPREK 660 RKV + K+T+ V YLSA+EE +AQAN+++D+DG+ +ELV R E +V ++ Sbjct: 596 RKVENSKLTDQVDYLSAIEEGKYVVAQANATVDKDGNLVDELVSAREGSERETRMVTPDR 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + +ID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 656 VQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGVERTVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 716 VDSGTAVQATRGGLVDYVDANRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VKVGD V R D+IADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 776 MVKVGDIVARGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N++E L +DE GI +GAEV GD++VGK+TP Sbjct: 836 SIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVMVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R G+ +++R+ S+ Sbjct: 896 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVTRDKRAQSII 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 E+++ D +D+ I++ + + RL +L G+ GPK K T L+ + +++ + Sbjct: 956 DEELKRYRLDLNDQLRIVEGDAFQRLERLLVGKVVNGGPKKLAKGTALTKEYLADLDKWH 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ D+ V +E++K E + + F+ K +K+ GD++PPGV+++VKV++A+ Sbjct: 1016 WFDIRPSDDDVATQLEAVKEAIEQKRHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAV 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1076 KRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG++I +++ KA + +R L ++ E + D VL +AE Sbjct: 1136 LGWAARGLGERIGNML---KAQAKAAEMRKLLGQIYNESGKVEDLDSLSDAEVLELAENL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDES-----G------QSILYDGLTGEPFDRPV 1249 K GVP +TPVFDGA E+ I ML +A E G Q L+DG TGE F+RPV Sbjct: 1193 KKGVPFATPVFDGAHEDEIRRMLDLA-YPEDIAKEKGLTASKQQVTLFDGRTGEAFERPV 1251 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 T+G ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y Sbjct: 1252 TLGVMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASY 1311 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 VLQEMLT+KSDDV GRT+VYE+IV G + + G PESFNVLVKE+++LG+ IDLE + Sbjct: 1312 VLQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLERN 1368 >gi|296163259|ref|ZP_06846023.1| DNA-directed RNA polymerase, beta subunit [Burkholderia sp. Ch1-1] gi|295886495|gb|EFG66349.1| DNA-directed RNA polymerase, beta subunit [Burkholderia sp. Ch1-1] Length = 1368 Score = 1652 bits (4277), Expect = 0.0, Method: Composition-based stats. Identities = 702/1374 (51%), Positives = 964/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL + + +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY PP F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMP 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G +++ K++ + ++ L KF+ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-RDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E LE++ S+I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++ EDGS T+ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYVIAQANAAVAEDGSLTDELVSSREAGETLMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRMVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD V R D++ADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KVGDIVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIEQAYLQDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE+ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I+ LR FL K+ E++ + DD ++ +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIAELREFLAKIYNESGRAEELDSFTDDEIVELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQ----------SILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE ++ L +A D+ + LYDG TGE F+R VTVG Sbjct: 1195 GVPFATPVFDGATEEEMSRALDLAFPDDIAKQLGMTPSKNQVRLYDGRTGEMFERTVTVG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|320540634|ref|ZP_08040284.1| RNA polymerase, beta subunit [Serratia symbiotica str. Tucson] gi|320029565|gb|EFW11594.1| RNA polymerase, beta subunit [Serratia symbiotica str. Tucson] Length = 1342 Score = 1652 bits (4277), Expect = 0.0, Method: Composition-based stats. Identities = 710/1364 (52%), Positives = 972/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK+P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKSPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFFAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ KI + RG Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKITFEIRG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ + + + + Sbjct: 235 NKLQMELVPERL-RGETASFDIE--ANGKIYVEKGRRITARHIRQLEKDEIYSIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ + + I L+ + +++ AYI T+ Sbjct: 292 IAGKVVAQDYIDTNTGELICTANMELSLDLLAKLSQAGHKCIETLFTNDLDHGAYISETI 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPSSDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKNDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD+DG F E+LV CR GE L R+++D Sbjct: 592 RRVRDGMVTDEINYLSAIEEGNFVIAQANSNLDDDGRFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+ + P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRVDKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQIPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D +E IL+ +++R+ +L ++ +S+ PR +W Sbjct: 952 QLKQVKKDLTEELQILEAGLFARIHAVLVAGGV-------------EAEKLSKLPRDRWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + E+ Q +E L QY+ KS E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLTVEEKQNQLEHLAEQYDELKSDFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI ++ + + + ++ + DD VLR+AE K+ Sbjct: 1119 MAAKGIGEKINQMLKQQQEVARLREFIQKAYDLGDDVCQKVDLNTFTDDEVLRLAENLKN 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L M + SGQ LYDG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKETEIKQLLEMGGIPTSGQITLYDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE 1342 >gi|187925624|ref|YP_001897266.1| DNA-directed RNA polymerase subunit beta [Burkholderia phytofirmans PsJN] gi|226699383|sp|B2T759|RPOB_BURPP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|187716818|gb|ACD18042.1| DNA-directed RNA polymerase, beta subunit [Burkholderia phytofirmans PsJN] Length = 1368 Score = 1652 bits (4277), Expect = 0.0, Method: Composition-based stats. Identities = 702/1374 (51%), Positives = 965/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL + + +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY PP F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMP 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G +++ K++ + ++ L KF+ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-RDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E LE++ S+I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++ EDGS T+ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYVIAQANAAVAEDGSLTDELVSSREAGETLMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA R+VIR + + +GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQAFRGGVVDYVDAGRMVIRVNDDEAAAGETGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD V R D++ADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KVGDIVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIEQAYLQDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE+ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I+ LR FL K+ E++ + DD ++ +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIAELREFLTKIYNESGRAEELDSFTDDEIVELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQ----------SILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE ++ L +A D+ + LYDG TGE F+R VTVG Sbjct: 1195 GVPFATPVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQVRLYDGRTGEMFERTVTVG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|226798|prf||1606216A RNA polymerase beta Length = 1357 Score = 1651 bits (4276), Expect = 0.0, Method: Composition-based stats. Identities = 707/1365 (51%), Positives = 973/1365 (71%), Gaps = 9/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY FL P L AAFKSV Sbjct: 1 MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGSIQGSLPRRRLHAAFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LE+V Y P FDV +C+ R +T+AVPL++ +RLI+FD + K+I Sbjct: 61 FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDK--ESSNKAI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQ+HRSPG+ FDHD+G+ SGKLLY+ Sbjct: 119 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQMHRSPGVFFDHDRGKTHSSGKLLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +EE+L+TFY V+ G Sbjct: 179 RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D +TG+ ++E G+++T+ + L++ GVK L + + Sbjct: 239 EKLSLELVPQRLA-GEVAVMDIHD-ETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+ IV+ TGEI E + + L ++ +++ I LY + ++ +I +TL Sbjct: 297 VLGRTTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE++FN LFF +++YDLS +GR+K N R+ Sbjct: 357 KIDTTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSPLGRMKFNRRIGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ ++K LVD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ Sbjct: 417 TEIEGSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ + N LS ITH RR S Sbjct: 477 ERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRCS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR N YGF+E+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G V++D+V+LSA+EE + IAQA++++++ +ELV R E + E + Sbjct: 597 RVVKEGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVT 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ Sbjct: 657 LMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +V +R G+++ VDA RIV+R + +++ VDIY L K+ RSNQNTC+NQRPLV Sbjct: 717 SGVCVVRRRGGVIDSVDASRIVVRVADDEVETGERRVDIYNLTKYTRSNQNTCINQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD+V+R DI+AD STD+G+LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+I Sbjct: 777 SKGDKVQRGDIMADRASTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARD KLGP EIT IPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 837 HIQELTCVARDNKLGPREITSGIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++++ R++++E+ Sbjct: 897 HTQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTQGTVIDVQVFTRDGVERDSRALAIEKM 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D ++E I++ + RL L GQ G G KK TV++ +++ QW+ Sbjct: 957 QLDEIPQDLNEEFRIVEGATFERLRSALNGQVVDGG-AGLKKGTVITDEVLDGLDDGQWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + ++ + +E + + +L+D+F++K +Q GDD+ PGVL++VKV++A++R Sbjct: 1016 KLRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRNVQQGDDLAPGVLKIVKVYLAIRR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVD+VLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG+KI ++ + + + LR FL +V G E + ++ D+ +L +A K Sbjct: 1136 LAAKGLGEKIDRMLEEQR---KAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLK 1192 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP++TPVFDGA E I +ML++ADL ESGQ +L+DG T F+RPVTVGY+YMLKLNH Sbjct: 1193 KGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTRNKFERPVTVGYMYMLKLNH 1252 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGG + GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1253 LVDDKMHARSTGSYSLVTQQPLGGLAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1312 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G ESFNVL+KE+++LG+ IDLE Sbjct: 1313 VNGRTKMYKNIVDGDHRMEPGMAESFNVLIKEIRSLGIDIDLETE 1357 >gi|299065400|emb|CBJ36569.1| RNA polymerase, beta subunit [Ralstonia solanacearum CMR15] Length = 1368 Score = 1651 bits (4276), Expect = 0.0, Method: Composition-based stats. Identities = 704/1377 (51%), Positives = 961/1377 (69%), Gaps = 22/1377 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL + + +R +EGLQAAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHASVAQRKSEGLQAAFNAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A +EFVSY P FDV +C R LT+ L+ +RLI+ D + T + Sbjct: 61 FPIVSHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPT---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+IKEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEIKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L ++G+ E+IL+ F+ ++ + Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKS 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L G + D G+ V+E K++ + ++ L G K + + D Sbjct: 238 DGALMEFVPERL-RGEVARFDISD-KNGKVVVEKDKRINAKHIRDLDAAGTKLISVPEDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D + E LE++ + +++I LY + ++ Y+ TL Sbjct: 296 LLGRVLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKEIQTLYTNDLDQGPYMSQTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD D+ A + IYR+MRPG+ T E++F LF+ D YDLS VGR+K+N RLN Sbjct: 356 RTDDTVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYDLSRVGRMKVNSRLNR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DI+ IK+LV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 SEGTGPMVLTDDDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRIS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A++N YGF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNDYGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPREK 660 RKV + K+T+ V YLSA+EE +AQAN+++D+DG+ +ELV R E +V ++ Sbjct: 596 RKVENSKLTDQVDYLSAIEEGKYVVAQANATVDKDGNLVDELVSAREGSERETRMVTPDR 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + +ID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 656 VQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGVERTVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 716 VDSGTAVQATRGGLVDYVDANRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VKVGD V R D+IADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 776 MVKVGDIVARGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N++E L +DE GI +GAEV GD++VGK+TP Sbjct: 836 SIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVMVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R G+ +++R+ S+ Sbjct: 896 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVTRDKRAQSII 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 E+++ D +D+ I++ + + RL +L G+ GPK K T L+ + +++ + Sbjct: 956 DEELKRYRLDLNDQLRIVEGDAFQRLERLLVGKVVNGGPKKLAKGTALTKEYLADLDKWH 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ D++V +E++K E + + F+ K +K+ GD++PPGV+++VKV++A+ Sbjct: 1016 WFDIRPSDDEVATQLEAVKEAIEQKRHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAV 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1076 KRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG++I +++ KA +R L ++ E + D VL +AE Sbjct: 1136 LGWAARGLGERIGNML---KAQAKAVEMRKLLGQIYNESGKVEDLDSLSDAEVLELAENL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDES-----G------QSILYDGLTGEPFDRPV 1249 K GVP +TPVFDGA E+ I ML +A E G Q L+DG TGE F+RPV Sbjct: 1193 KKGVPFATPVFDGAHEDEIRRMLDLA-YPEDIAKEKGLTASKQQVTLFDGRTGEAFERPV 1251 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 T+G ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y Sbjct: 1252 TLGVMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASY 1311 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 VLQEMLT+KSDDV GRT+VYE+IV G + + G PESFNVLVKE+++LG+ IDLE + Sbjct: 1312 VLQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLERN 1368 >gi|309782817|ref|ZP_07677537.1| DNA-directed RNA polymerase, beta subunit [Ralstonia sp. 5_7_47FAA] gi|308918241|gb|EFP63918.1| DNA-directed RNA polymerase, beta subunit [Ralstonia sp. 5_7_47FAA] Length = 1368 Score = 1651 bits (4275), Expect = 0.0, Method: Composition-based stats. Identities = 708/1377 (51%), Positives = 965/1377 (70%), Gaps = 22/1377 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL N +R +EGLQAAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQENTPVAQRKSEGLQAAFNAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A +EFVSY P FDV +C R LT+ L+ +RLI+ D + T + Sbjct: 61 FPIVSHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPT---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+IKEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEIKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L ++G+ E+IL+ F+ ++ + Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKT 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ V+E K++ + ++ L G K + + D Sbjct: 238 EGALMEFVPERL-RGEVARFDISD-KNGKVVVEKDKRINAKHIRDLDSAGTKLISVPEDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D + E LE++ + +++I LY + ++ Y+ TL Sbjct: 296 LLGRVLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKEIQTLYTNDLDQGPYMSATL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD D+ A + IYR+MRPG+ T E++F LF+ D YDLS VGR+K+N RLN Sbjct: 356 RTDDTADQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYDLSRVGRMKVNSRLNR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 T + EDI+ IK+LV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 STGTGPMVLTDEDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRIS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A++N YGF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNDYGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPREK 660 RKV +GK+T+ V YLSA+EE +AQAN++LD+DG+ +ELV R E +V ++ Sbjct: 596 RKVENGKLTDQVDYLSAIEEGKYVVAQANATLDKDGNLIDELVSAREGSERETRMVTPDR 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + +ID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 656 VQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGVERTVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 716 VDSGTAVQATRGGVVDYVDANRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VKVGD V R D+IADG STD+G+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 776 MVKVGDIVARGDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N++E L +DE GI +GAEV GD+LVGK+TP Sbjct: 836 SIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVLVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R G+ +++R+ S+ Sbjct: 896 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVVRDKRAQSII 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 E+++ D +D+ I++ + + RL +L G+ A GPK K T L+ + +++ + Sbjct: 956 DEELKRYRLDLNDQLRIVEGDAFQRLERLLVGKVANGGPKKLAKGTALTKEYLADLDKWH 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ +++V +E++KV E + + F+ K +K+ GD++PPGV+++VKV++A+ Sbjct: 1016 WFDIRPAEDEVALQLEAVKVAIEQKRHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAV 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1076 KRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG++I +++ KA + +R L ++ E + D +L +AE Sbjct: 1136 LGWAARGLGERIGNML---KAQAKAAEIRKLLGQIYNESGKVEDLDSLSDAEILELAENL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDES-----G------QSILYDGLTGEPFDRPV 1249 K GVP +TPVFDGA E+ I ML +A E G Q L+DG TGE F+RPV Sbjct: 1193 KKGVPFATPVFDGAHEDEIRRMLDLA-YPEDIAKEKGLTASKQQVTLFDGRTGEAFERPV 1251 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 T+G ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y Sbjct: 1252 TLGVMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASY 1311 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 VLQEMLT+KSDDV GRT+VYE+IV G + + G PESFNVLVKE+++LG+ IDLE + Sbjct: 1312 VLQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLERN 1368 >gi|194364527|ref|YP_002027137.1| DNA-directed RNA polymerase subunit beta [Stenotrophomonas maltophilia R551-3] gi|254765306|sp|B4SKV6|RPOB_STRM5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|194347331|gb|ACF50454.1| DNA-directed RNA polymerase, beta subunit [Stenotrophomonas maltophilia R551-3] Length = 1384 Score = 1650 bits (4274), Expect = 0.0, Method: Composition-based stats. Identities = 702/1390 (50%), Positives = 970/1390 (69%), Gaps = 35/1390 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL N+ P +R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENVDPAKRTDHGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI ++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PIASYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT++GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EE+L+ F+ + D Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G + L D D + ++E+GK++T+ +K L+ G+ L + D + Sbjct: 241 EGVQLELVPERLRGETLGFDLADGD--KVIVEAGKRITARHIKQLEASGIAALAVPDDYI 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+ TGE+ +A D I ++ L+ + + + L+V+ ++ Y+ NTL Sbjct: 299 VGRILSHDVVDASTGELLAQANDEITDEQLQAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLS VGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + +IK+L ++RNG+G +DDID+LGN Sbjct: 419 ETTGEAVLYDRKYYGERNDEESKRLVAAHGDSSDILDVIKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL +AR N YGF+ETPYRKV DGKV ++V +LSA+EE IAQAN+ + D T Sbjct: 599 LINSLAVYARTNQYGFLETPYRKVVDGKVYDEVEFLSAIEENEYVIAQANALTNADSVLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VSIAA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRFQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD-PSTSGVD 760 P L+A+ P VGTG+E VA+ SG + A+R G + Q+DA RIV++ VE ++ + +GVD Sbjct: 719 PTLRAQKPLVGTGIERAVARDSGVTVNARRGGEIVQIDAARIVVKVVEEEIVGATDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV+VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLVKYTRSNQNTCINQRPLVQVGDIIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY RL + G+ G Sbjct: 959 DVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYMRLRSQIVGKVVNGG-A 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 G KK V+S + ++ W+ ++DE +E + Q + + E RF +K KI Sbjct: 1018 GLKKGDVISDAFLDGLKKADWFALRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G VDI Sbjct: 1078 TAGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGETVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI++++ +A ++ LR FL+ + Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQAMM---EAQAAVADLRKFLDDIYNHDD 1194 Query: 1181 ----HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 + +S + D+ +LR+A GVP++TPVFDGA E I ML +ADL SGQ+ L Sbjct: 1195 TNVANRVDLSQFSDEELLRLARNLTDGVPMATPVFDGATEAEIKRMLELADLPSSGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGRTGEAFDRHTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLENS 1366 L ++++LE++ Sbjct: 1375 LAINMELEDN 1384 >gi|188992861|ref|YP_001904871.1| DNA-directed RNA polymerase subunit beta [Xanthomonas campestris pv. campestris str. B100] gi|226699459|sp|B0RU89|RPOB_XANCB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|167734621|emb|CAP52831.1| DNA directed RNA polymerase (beta subunit) [Xanthomonas campestris pv. campestris] Length = 1387 Score = 1650 bits (4273), Expect = 0.0, Method: Composition-based stats. Identities = 708/1389 (50%), Positives = 973/1389 (70%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ P++R + GL AA KSVF Sbjct: 7 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHAALKSVF 66 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 67 PISSYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 124 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT++GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 125 YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 184 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG ++EE+L+ F+ + D Sbjct: 185 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLAEFFEINTFHINPD 244 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ GV L + D L Sbjct: 245 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYL 302 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+G TGE+ A D I E L + + + L+V+ ++ Y+ NTL Sbjct: 303 VGRILSHDVVDGSTGELLANANDEISEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 362 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 363 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 422 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A +IK+L ++RNG+G +DDID+LGN Sbjct: 423 EVLGESVLYDKKYFAERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHLGN 482 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 483 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 542 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 543 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 602 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D T Sbjct: 603 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLT 662 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 663 EQFVPCRFQGESLLKPPAEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 722 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A+R G++EQ+DA RIV++ E + +GVD Sbjct: 723 PTLRSQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 782 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 783 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 842 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 843 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 902 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 903 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 962 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A GP Sbjct: 963 DVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGP- 1021 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK ++ + +S W+Q ++D+ +E + Q + + E RF +K KI Sbjct: 1022 NLKKGDNVTDAYLDGLKKSDWFQLRMKDDDAADAIERAQKQIQAHEKEFEARFADKRGKI 1081 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G PVDI Sbjct: 1082 TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGEPVDI 1141 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI+ ++ +A +S LR FL+ + S Sbjct: 1142 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRML---EAQTAVSELRKFLDDIYNHDS 1198 Query: 1181 HTE----KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + D+ +L + + GVP++TPVFDGA E I ML +A+L +SGQ+ L Sbjct: 1199 AINAERVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELAELPQSGQTQL 1258 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1259 YDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1318 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1319 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1378 Query: 1357 LGLSIDLEN 1365 L ++++LE Sbjct: 1379 LAINMELEE 1387 >gi|241664549|ref|YP_002982909.1| DNA-directed RNA polymerase subunit beta [Ralstonia pickettii 12D] gi|240866576|gb|ACS64237.1| DNA-directed RNA polymerase, beta subunit [Ralstonia pickettii 12D] Length = 1368 Score = 1650 bits (4272), Expect = 0.0, Method: Composition-based stats. Identities = 709/1377 (51%), Positives = 965/1377 (70%), Gaps = 22/1377 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL N +R +EGLQAAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQENTPVAQRKSEGLQAAFNAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A +EFVSY P FDV +C R LT+ L+ +RLI+ D + T + Sbjct: 61 FPIVSHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPT---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+IKEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEIKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L ++G+ E+IL+ F+ ++ + Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKT 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ V+E K++ + ++ L G K + + D Sbjct: 238 EGALMEFVPERL-RGEVARFDISD-KNGKVVVEKDKRINAKHIRDLDSAGTKLISVPEDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D + E LE++ + +++I LY + ++ Y+ TL Sbjct: 296 LLGRVLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKEIQTLYTNDLDQGPYMSATL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD D+ A + IYR+MRPG+ T E++F LF+ D YDLS VGR+K+N RLN Sbjct: 356 RTDDTADQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYDLSRVGRMKVNSRLNR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 T + EDI+ IK+LV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 STGTGPMVLTDEDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRIS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A++N YGF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNDYGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPREK 660 RKV +GK+T+ V YLSA+EE +AQAN++LD+DG+ +ELV R E +V ++ Sbjct: 596 RKVENGKLTDQVDYLSAIEEGKYVVAQANATLDKDGNLIDELVSAREGSERETRMVTPDR 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + +ID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 656 VQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGVERTVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 716 VDSGTAVQATRGGVVDYVDANRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VKVGD V R D+IADG STD+G+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 776 MVKVGDIVARGDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N++E L +DE GI +GAEV GD+LVGK+TP Sbjct: 836 SIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVLVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R G+ +++R+ S+ Sbjct: 896 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVVRDKRAQSII 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 E+++ D +D+ I++ + + RL +L G+ A GPK K T L+ + + + + Sbjct: 956 DEELKRYRLDLNDQLRIVEGDAFQRLERLLVGKVANGGPKKLAKGTALTKEYLGDLDKWH 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ +++V +E++KV E + + F+ K +K+ GD++PPGV+++VKV++A+ Sbjct: 1016 WFDIRPAEDEVALQLEAVKVAIEQKRHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAV 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1076 KRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG++I +++ KA + +R LE++ E + D +L +AE Sbjct: 1136 LGWAARGLGERIGNML---KAQAKAAEIRKLLEQIYNESGKVEDLDSLSDAEILELAENL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDES-----G------QSILYDGLTGEPFDRPV 1249 K GVP +TPVFDGA E+ I ML +A E G Q L+DG TGE F+RPV Sbjct: 1193 KKGVPFATPVFDGAHEDEIRRMLDLA-YPEDIAKEKGLTASKQQVTLFDGRTGEAFERPV 1251 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 T+G ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y Sbjct: 1252 TLGVMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASY 1311 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 VLQEMLT+KSDDV GRT+VYE+IV G + + G PESFNVLVKE+++LG+ IDLE + Sbjct: 1312 VLQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLERN 1368 >gi|194291035|ref|YP_002006942.1| DNA-directed RNA polymerase subunit beta [Cupriavidus taiwanensis LMG 19424] gi|226699392|sp|B3R7T6|RPOB_CUPTR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|193224870|emb|CAQ70881.1| RNA polymerase, beta subunit [Cupriavidus taiwanensis LMG 19424] Length = 1368 Score = 1650 bits (4272), Expect = 0.0, Method: Composition-based stats. Identities = 700/1375 (50%), Positives = 956/1375 (69%), Gaps = 20/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL + P R EGLQAAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIESYTQFLQADTPPARRKTEGLQAAFNAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI++ +G A +EFVSY P FDV +C R LT+ L+ +RLI+ D + + Sbjct: 61 FPISSHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPG---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEVKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L ++G+ E+IL+ F+ ++ + Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLQS 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G V+E K++ + ++ L G K + + D Sbjct: 238 EGAQLEFVPERL-RGEVARFDIAD-KNGRVVVEKDKRINAKHIRDLDSAGTKLISVPEDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++I++ +TGE+ A D + E LE + + ++ I LY + ++ Y+ TL Sbjct: 296 LLGRVLAKNIIDPDTGEVIANANDELTEALLENLREAGVKQIQTLYTNDLDQGPYMSQTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL Sbjct: 356 RVDETADQTAARIAIYRMMRPGEPPTEEAVEALFQRLFYSEESYDLSRVGRMKVNSRLGR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + ++ EDI+ IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 PSGEGAMVLQDEDILETIKILVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPREK 660 RKV D K+T++V YLSA+EE +AQAN+++D DG+ T+ELV R E +V ++ Sbjct: 596 RKVVDSKLTDEVDYLSAIEEGKYVVAQANATVDADGNLTDELVSAREGSERETRMVTPDR 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + +ID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+ + P VGTG+E VA Sbjct: 656 VQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGIERTVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA+RIVIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 716 VDSGTAVQAMRGGVVDYVDAMRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VKVGD V R D+IADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 776 MVKVGDHVARGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N++E L +DE GI +GAEV GD+LVGK+TP Sbjct: 836 SIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVLVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SG V+DV++F R G+ +++R+ S+ Sbjct: 896 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGIVIDVQVFTREGVTRDKRAQSII 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 ++++ D +D+ I++ + + RL +L + GPK K ++ + +++ + Sbjct: 956 DDELKRYRLDLNDQLRIVEGDAFQRLERLLVDKTVNGGPKKLAKGAKITKEYLADIDKYH 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ DE++ +E++K E + + F+ K +K+ GD++PPGV+++VKV++A+ Sbjct: 1016 WFDIRPADEELAAQLEAVKEAIEQKRHEFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAV 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1076 KRRLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG++I ++ KA LR+ L ++ E + D VL +A Sbjct: 1136 LGWAARGLGQRIGDML---KAQAKAQELRTLLSQIYNESGKPEDLDSLSDAEVLELANNL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLD----ESG------QSILYDGLTGEPFDRPVT 1250 K GVP +TPVFDGA E+ I ML +A D E G Q L+DG TGE F+RPVT Sbjct: 1193 KKGVPFATPVFDGAHEDEIRRMLDLAYPDDVAREKGLTASKQQVTLFDGRTGEAFERPVT 1252 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 +G ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YV Sbjct: 1253 LGVMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYV 1312 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 LQEMLT+KSDDV GRT+VYE+IV G + + G PESFNVLVKE+++LG+ IDL+ Sbjct: 1313 LQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLDR 1367 >gi|325916480|ref|ZP_08178749.1| DNA-directed RNA polymerase subunit beta [Xanthomonas vesicatoria ATCC 35937] gi|325537269|gb|EGD08996.1| DNA-directed RNA polymerase subunit beta [Xanthomonas vesicatoria ATCC 35937] Length = 1383 Score = 1650 bits (4272), Expect = 0.0, Method: Composition-based stats. Identities = 708/1389 (50%), Positives = 969/1389 (69%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ P +R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPTKRKDLGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT +GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EE+L+ F+ + D Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ GV L + D L Sbjct: 241 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+G TGE+ A D I E L + + + L+V+ ++ Y+ NTL Sbjct: 299 VGRILSHDVVDGSTGELLANANDEISEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A +IK+L ++RNG+G +DDID+LGN Sbjct: 419 EVLGESVLYDKKYFAERNDEESKRLVAEHTDTSDILEVIKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAINEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRFQGESLLKPPAEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A R G++EQ+DA RIV++ E + +GVD Sbjct: 719 PTLRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A GP Sbjct: 959 DVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGP- 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK ++ + +S W+Q ++DE +E + Q + + E RF +K KI Sbjct: 1018 NLKKGDNVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G PVDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGEPVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI+ ++ +A +S LR FL+ + + Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRML---EAQAAVSELRKFLDDIYNHDN 1194 Query: 1181 HTE----KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + D+ +L + + GVP++TPVFDGA E I ML +A+L +SGQ+ L Sbjct: 1195 AINAQRVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELAELPQSGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLEN 1365 L ++++LE Sbjct: 1375 LAINMELEE 1383 >gi|85058112|ref|YP_453814.1| DNA-directed RNA polymerase subunit beta [Sodalis glossinidius str. 'morsitans'] gi|109914396|sp|Q2NWR6|RPOB_SODGM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|84778632|dbj|BAE73409.1| RNA polymerase beta subunit [Sodalis glossinidius str. 'morsitans'] Length = 1342 Score = 1650 bits (4272), Expect = 0.0, Method: Composition-based stats. Identities = 703/1364 (51%), Positives = 962/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+ L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVSYLLSIQLDSFQKFIERD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +T++ PL++ LRLI+++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLIIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL TF+ K+VY Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYSTGQILDTFFDKVVYEIHD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G S + G +E G+++T+ ++ L++ GV + + + Sbjct: 235 KKLQMELLPERL-RGETASFDIE--ANGTVYVEKGRRITARHIRQLEKDGVAQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V +D ++ TGEI + A + L ++ + + I L+ + +++ AYI TL Sbjct: 292 IIGKAVVKDYIDENTGEIIVPANMELTLDLLAKLSQAGHKRIETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQAN++L +DGSF ++LV CR GE L R+++D Sbjct: 592 RRVQDGVVTDEIHYLSAIEEGNFVIAQANTNLGDDGSFVDDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L + P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLCTDKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI ++ P +G+DIY L K+ RSNQNTC++Q P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVINVNPDEMYPGEAGIDIYNLTKYIRSNQNTCISQTPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDSML+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSMLVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E I + +++R+ ++L + ++ + + R +W Sbjct: 952 QLKQAKKDLTEELQIFEAGLFARIRDVLISGG-------------IEAEKLDKLTRERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELGLADEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGVPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ ++ + + ++ + D+ VLR+AE K Sbjct: 1119 MAAKGIGDKINAMLKQHEEVAKLREFIQKAYNLGDDVRQKVDLNTFSDEEVLRLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGAKEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGNHMMEPGMPESFNVLLKEIRSLGINIELEED 1342 >gi|295677940|ref|YP_003606464.1| DNA-directed RNA polymerase, beta subunit [Burkholderia sp. CCGE1002] gi|295437783|gb|ADG16953.1| DNA-directed RNA polymerase, beta subunit [Burkholderia sp. CCGE1002] Length = 1368 Score = 1650 bits (4272), Expect = 0.0, Method: Composition-based stats. Identities = 700/1374 (50%), Positives = 967/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL + + +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY PP F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMP 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G +++ K++ + ++ L KF+ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-RDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++++G+TGE+ A D I E LE++ ++I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVIDGDTGEVIANANDEITESVLEKLREAKIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ + YDLS VGR+K N R+ Sbjct: 358 RIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+ + YLSA+EE IAQAN+++ +DG+ T+ELV R AGE ++V ++I Sbjct: 598 RKVADGKVTDQIDYLSAIEEGRYVIAQANAAVADDGTLTDELVSSREAGETLMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLEGKVANGGPKKLAKGTKIERAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE+ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADEEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I+ LR FL K+ E++ + DD +L +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIAELREFLIKIYNESGRAEELDSFSDDEILELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESG----------QSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE ++ L +A DE Q L+DG TGE F+R VTVG Sbjct: 1195 GVPFATPVFDGATEEEMSRALDLAFPDEIAQNLGMTPSKNQVRLFDGRTGEMFERTVTVG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|187930381|ref|YP_001900868.1| DNA-directed RNA polymerase subunit beta [Ralstonia pickettii 12J] gi|226699434|sp|B2UEN6|RPOB_RALPJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|187727271|gb|ACD28436.1| DNA-directed RNA polymerase, beta subunit [Ralstonia pickettii 12J] Length = 1368 Score = 1649 bits (4270), Expect = 0.0, Method: Composition-based stats. Identities = 706/1377 (51%), Positives = 965/1377 (70%), Gaps = 22/1377 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL N +R +EGLQAAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQENAPVAQRKSEGLQAAFNAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A +EFVSY P FDV +C R LT+ L+ +RLI+ D + T + Sbjct: 61 FPIVSHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPT---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+IKEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEIKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L ++G+ E+IL+ F+ ++ + Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKT 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ V+E K++ + ++ L G K + + D Sbjct: 238 EGALMEFVPERL-RGEVARFDISD-KNGKVVVEKDKRINAKHIRDLDSAGTKLISVPEDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D + E LE++ + +++I LY + ++ Y+ TL Sbjct: 296 LLGRVLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKEIQTLYTNDLDQGPYMSATL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD D+ A + IYR+MRPG+ T E++F LF+ D YDLS VGR+K+N RLN Sbjct: 356 RTDDTADQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYDLSRVGRMKVNSRLNR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDI+ IK+LV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 SSGTGPMVLTDEDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRIS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A++N YGF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNDYGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPREK 660 RKV +GK+T+ V YLSA+EE +AQAN++LD+DG+ +ELV R E +V ++ Sbjct: 596 RKVENGKLTDQVDYLSAIEEGKYVVAQANATLDKDGNLIDELVSAREGSERETRMVTPDR 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + +ID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 656 VQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGVERTVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 716 VDSGTAVQATRGGVVDYVDANRVVIRVNDAEAVAGEVGVDIYNLIKYTRSNQNTNINQRP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VKVGD V R D+IADG STD+G+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 776 MVKVGDVVARGDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N++E L +DE GI +GAEV GD++VGK+TP Sbjct: 836 SIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVMVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R G+ +++R+ S+ Sbjct: 896 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVVRDKRAQSII 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 E+++ D +D+ I++ + + RL +L G+ A GPK K T L+ + +++ + Sbjct: 956 DEELKRYRLDLNDQLRIVEGDAFQRLERLLVGKIANGGPKKLAKGTALTKEYLADLDKWH 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ +++V +E++KV E + + F+ K +K+ GD++PPGV+++VKV++A+ Sbjct: 1016 WFDIRPAEDEVALQLEAVKVAIEQKRHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAV 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1076 KRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG++I +++ KA + +R L ++ E + D +L +AE Sbjct: 1136 LGWAARGLGERIGNML---KAQAKAAEIRKLLGQIYNESGKVEDLDSLSDAEILELAENL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDES-----G------QSILYDGLTGEPFDRPV 1249 K GVP +TPVFDGA E+ I ML +A E G Q L+DG TGE F+RPV Sbjct: 1193 KKGVPFATPVFDGAHEDEIRRMLDLA-YPEDIAKEKGLTASKQQVTLFDGRTGEAFERPV 1251 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 T+G ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y Sbjct: 1252 TLGVMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASY 1311 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 VLQEMLT+KSDDV GRT+VYE+IV G + + G PESFNVLVKE+++LG+ IDLE + Sbjct: 1312 VLQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLERN 1368 >gi|285017313|ref|YP_003375024.1| DNA-directed RNA polymerase, beta subunit protein [Xanthomonas albilineans GPE PC73] gi|283472531|emb|CBA15036.1| probable dna-directed rna polymerase, beta subunit protein [Xanthomonas albilineans] Length = 1383 Score = 1649 bits (4270), Expect = 0.0, Method: Composition-based stats. Identities = 706/1389 (50%), Positives = 967/1389 (69%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL N P++R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENTDPNKRSDHGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PISSYSGNAALEYVGYKLGDPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT +GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EE+LS F+ + Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLSEFFEINTFHIDPK 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 A+ + G + L D D + ++E+GK++T+ +K L+ G+ L + + L Sbjct: 241 EGVQLELVAERLRGETLDFDLADGD--KVIVEAGKRITARHVKQLEASGIAALAVPDEYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+ TGE+ A D I E+ L + + + L+V+ ++ Y+ NTL Sbjct: 299 VGRILSHDVVDAATGELLANANDEITEEQLNAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + +IK+L ++RNG+G +DDID+LGN Sbjct: 419 EVIGESVLYDKKYFGERSDEESKRLVAERADSSDILDVIKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTTETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DG++T++V YLSA+EE IAQAN+ D T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVVDGQITDEVEYLSAIEENEYVIAQANALHDAKNRLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VSIAA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRYQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+A+ P VGTG+E VA+ SG + A+R G++EQ+DA RIV++ E + +GVD Sbjct: 719 PTLRAQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAGRIVVKVNEAEIGGGTDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLIKYTRSNQNTCINQRPLVNVGDAIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL L G+ A GP Sbjct: 959 DVQVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILESAIYARLRSQLIGKVANGGP- 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK +S + +S+W+ ++DE +E + Q + + E RF +K KI Sbjct: 1018 NLKKGDTISDAYLDGLKKSEWFALRMKDEDASDAIERAQKQIQAHEQEFERRFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS I P EDMP++ +G VDI Sbjct: 1078 TAGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSMIQPIEDMPYMANGETVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-- 1178 VLNPLGVPSRMN+GQ+ E HLGWA GLG+KI+++++ ++ LR FL ++ Sbjct: 1138 VLNPLGVPSRMNIGQVLEVHLGWAAKGLGRKIQNMLDAQAN---VADLRKFLTQIYNHDQ 1194 Query: 1179 --GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 G + + D +L +++ GVP++TPVFDGA E I ML +ADL SGQ+ L Sbjct: 1195 KLGEDRVDLDQFSDAELLSLSKNLTDGVPMATPVFDGATEAEIKHMLELADLPISGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++MLKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGRTGEAFDRRTTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLEN 1365 L ++++LE+ Sbjct: 1375 LAINMELED 1383 >gi|253701929|ref|YP_003023118.1| DNA-directed RNA polymerase subunit beta [Geobacter sp. M21] gi|259494184|sp|C6E4R4|RPOB_GEOSM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|251776779|gb|ACT19360.1| DNA-directed RNA polymerase, beta subunit [Geobacter sp. M21] Length = 1371 Score = 1649 bits (4270), Expect = 0.0, Method: Composition-based stats. Identities = 720/1364 (52%), Positives = 992/1364 (72%), Gaps = 10/1364 (0%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK F K +IIDIP+LI++QK SY FL ++ D R N GL+A F+SVFPI FS A Sbjct: 11 LRKNFAKIHKIIDIPNLIDIQKNSYKRFLQLDTPVDARKNSGLEAVFRSVFPIRDFSDTA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE+VSY PK+DV++C R +T+A P+K+ +RL+V+DV + G +SI+DIKEQ +Y Sbjct: 71 SLEYVSYSLGAPKYDVEECHQRGMTFAAPMKVKVRLVVWDVAKDPGTRSIRDIKEQEVYF 130 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++PLMT +GTF+I G +R++VSQLHRSPG+ +DHDKG+ SGK+LY+ R+IP +G W+ Sbjct: 131 GEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSARVIPYRGSWL 190 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D EFD KDI++VRIDRRRK+P T L ALG ++ +++ FY + ++ A Sbjct: 191 DFEFDHKDILYVRIDRRRKMPATVLLKALGYSNDALINYFYKSEDVKVGDNGSMTKIADA 250 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 +L+ K ++ +VD TGE ++++ +K T ++ + E G+K + I+ + + G + DI Sbjct: 251 ELLSNQKATADIVDPATGEVILKANRKFTKAAIRKMSEHGIKEIPISEEEVVGKVASHDI 310 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 + TGEI +E + + + LEEI I +L++D+++ + R+T++ DK + Sbjct: 311 YDPATGEIIVECNEELTQAKLEEIIQKGITTFQVLFIDNLHVTSSFRDTILIDKIGSTDE 370 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 AL++IYR +RPGD T A +F LFF++++YDLS VGR+K+N +L +D P D + Sbjct: 371 ALIEIYRRLRPGDPPTLKSALVLFENLFFNAERYDLSAVGRLKLNYKLGVDVPLDCMTLT 430 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 +EDI+ +++ L++L+NGKG IDDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER+S Sbjct: 431 REDILEVVRYLIELKNGKGNIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSL 490 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 +++++MP DLIN+KPV + V EFF SSQLSQ + N LS +TH RRLSALG GG+ R Sbjct: 491 QEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRE 550 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+++AR+N +GF+ETPYR V +G+VT+ Sbjct: 551 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRVVKEGRVTD 610 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 +V + SA+EEE IAQAN+ +DE G F + + R +GE +LV R++++ +D +P Q+V Sbjct: 611 EVRFFSALEEEGHAIAQANAEIDETGRFAADYISARKSGEFVLVGRDELELMDVAPMQLV 670 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S+AASLIPFLENDD+NR LMG NMQRQAVPLL+A++P VGTGME VVA+ SG ++VA+ Sbjct: 671 SVAASLIPFLENDDANRALMGSNMQRQAVPLLRADSPLVGTGMERVVARDSGVSLVARHN 730 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G+VE VDA RIV++ E D + +GVDIY L+KF RSNQNTC+NQRPLVKVGD V D Sbjct: 731 GVVESVDASRIVVKIDEDQYDATGTGVDIYNLIKFARSNQNTCINQRPLVKVGDHVTAGD 790 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 IIADGPSTD+G+LALG+N+L+AFMPW GYN+EDS+LISER+V +D +TSIHIEEFE +AR Sbjct: 791 IIADGPSTDMGELALGQNVLIAFMPWGGYNYEDSILISERLVKDDRYTSIHIEEFEAVAR 850 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLG EEIT DIPN+ EE LK++DE GII +GAEV PGDILVGKITPKGE+ ++PEEKL Sbjct: 851 DTKLGKEEITSDIPNLGEETLKDLDESGIIRIGAEVRPGDILVGKITPKGETQLSPEEKL 910 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFGEKA DVRDTSLRVP GV GTV+ +IF+R G DK+ R+ +E+ + L +D+ Sbjct: 911 LRAIFGEKAGDVRDTSLRVPPGVEGTVIGAKIFSRKGADKDARTEIIEKAEEMRLRKDEQ 970 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKG------FKKSTVLSSDLISEYPRSQWWQFAV 1026 DE I+ + +L ++L G+ A +G K ++ +++ + +W + ++ Sbjct: 971 DEIRIIRDSAIGKLKKLLVGKTAAVKIEGTDGKVLIPKGAAITEEMLKSFSMDRWDEISI 1030 Query: 1027 QDEK-VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 D+ V V I++ F +K++K++ GDD+PPGV+++VKV++A+KR +Q Sbjct: 1031 ADDDTVDEKVAQTLSTLNQQIDIIKYVFDDKVQKLRRGDDLPPGVIKMVKVYIAIKRKLQ 1090 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG+VSRILP EDMP+++DG PV+IVLNPLGVPSRMNVGQI E HLGWA Sbjct: 1091 VGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQILEMHLGWAA 1150 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 GLG KI+ ++ + +I + FL+ + + + +L VA++ K GVP Sbjct: 1151 KGLGWKIEEFLDKNAPHDEI---KRFLKGAYNNPDMDRFLDKLEGEELLNVAKRLKRGVP 1207 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 +S+PVF+GA EE+I SML A +GQ L+DG +G+ F VTVG +Y LKL+H+V D Sbjct: 1208 MSSPVFEGASEESIQSMLSHAGFSTTGQVTLFDGKSGDKFMHQVTVGIMYFLKLHHLVDD 1267 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDDV GR Sbjct: 1268 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVAGR 1327 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 TR+YE+IV G T E G PESFNVL+KE+Q+LGL ++L Sbjct: 1328 TRMYEAIVKGKHTLEPGLPESFNVLIKELQSLGLDVELLEGDED 1371 >gi|209520982|ref|ZP_03269718.1| DNA-directed RNA polymerase, beta subunit [Burkholderia sp. H160] gi|209498584|gb|EDZ98703.1| DNA-directed RNA polymerase, beta subunit [Burkholderia sp. H160] Length = 1368 Score = 1649 bits (4270), Expect = 0.0, Method: Composition-based stats. Identities = 699/1374 (50%), Positives = 967/1374 (70%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL + + +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY PP F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMP 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G +++ K++ + ++ L KF+ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-RDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++++G+TGE+ A D I E LE++ ++I+DI LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVIDGDTGEVIANANDEITESVLEKLREAKIKDIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ + YDLS VGR+K N R+ Sbjct: 358 RIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+ + YLSA+EE IAQAN+++ +DG+ T+ELV R AGE ++V ++I Sbjct: 598 RKVADGKVTDQIDYLSAIEEGRYVIAQANAAVGDDGTLTDELVSSREAGETLMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 KMGDKVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLEGKVANGGPKKLAKGTKIERAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE+ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADEEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ + I+ LR FL K+ E++ + DD ++ +A+ + Sbjct: 1138 WAAKGLGWRIGEML---QRQAKIAELREFLTKIYNESGRAEELESFSDDEIIELAKNLRE 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESG----------QSILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGA EE ++ L +A DE Q L+DG TGE F+R VTVG Sbjct: 1195 GVPFATPVFDGATEEEMSRALDLAFPDEIAQNLGMTPSKNQVRLFDGRTGEMFERTVTVG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 EMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368 >gi|66769649|ref|YP_244411.1| DNA-directed RNA polymerase subunit beta [Xanthomonas campestris pv. campestris str. 8004] gi|81304396|sp|Q4URD2|RPOB_XANC8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|66574981|gb|AAY50391.1| RNA polymerase beta subunit [Xanthomonas campestris pv. campestris str. 8004] Length = 1387 Score = 1648 bits (4268), Expect = 0.0, Method: Composition-based stats. Identities = 707/1389 (50%), Positives = 973/1389 (70%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ P++R + GL AA KSVF Sbjct: 7 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHAALKSVF 66 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 67 PISSYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 124 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT++GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 125 YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 184 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG ++EE+L+ F+ + D Sbjct: 185 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLAEFFEINTFHINPD 244 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ GV L + D L Sbjct: 245 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYL 302 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+G TGE+ A D I E L + + + L+V+ ++ Y+ NTL Sbjct: 303 VGRILSHDVVDGSTGELLANANDEISEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 362 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 363 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNHRVGRK 422 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A +IK+L ++RNG+G +DDID+LGN Sbjct: 423 EVLGESVLYDKKYFAERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHLGN 482 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 483 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 542 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LS+ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 543 LSRFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 602 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D T Sbjct: 603 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLT 662 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 663 EQFVPCRFQGESLLKPPAEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 722 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A+R G++EQ+DA RIV++ E + +GVD Sbjct: 723 PTLRSQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 782 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 783 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 842 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 843 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 902 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 903 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 962 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A GP Sbjct: 963 DVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGP- 1021 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK ++ + +S W+Q ++D+ +E + Q + + E RF +K KI Sbjct: 1022 NLKKGDNVTDAYLDGLKKSDWFQLRMKDDDAADAIERAQKQIQAHEKEFEARFADKRGKI 1081 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G PVDI Sbjct: 1082 TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGEPVDI 1141 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI+ ++ +A +S LR FL+ + S Sbjct: 1142 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRML---EAQTAVSELRKFLDDIYNHDS 1198 Query: 1181 HTE----KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + D+ +L + + GVP++TPVFDGA E I ML +A+L +SGQ+ L Sbjct: 1199 AINAERVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELAELPQSGQTQL 1258 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1259 YDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1318 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1319 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1378 Query: 1357 LGLSIDLEN 1365 L ++++LE Sbjct: 1379 LAINMELEE 1387 >gi|262273339|ref|ZP_06051154.1| DNA-directed RNA polymerase beta subunit [Grimontia hollisae CIP 101886] gi|262222712|gb|EEY74022.1| DNA-directed RNA polymerase beta subunit [Grimontia hollisae CIP 101886] Length = 1341 Score = 1648 bits (4268), Expect = 0.0, Method: Composition-based stats. Identities = 716/1366 (52%), Positives = 971/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVMFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++VRIDRRRK+P + L AL +E+IL F+ K+V+ +G Sbjct: 175 RIIPYRGSWLDFEFDPKDLLYVRIDRRRKLPASIILRALEYTTEQILDLFFEKVVFEVQG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E G+++T+ ++ L++ G+K + + + Sbjct: 235 KSLVMELVP-DRLRGETASFDIE--ADGKVYVEQGRRITARHIRQLEKDGIKQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A D +N ETGEI A + ++L + + + I L+ + +++ Y+ +TL Sbjct: 292 IVGKVAARDYINEETGEIIAAANQELSLETLAYLSQAGHKKIETLFTNDLDHGPYMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE +F LFF D+YDLS VGR+K N L Sbjct: 352 RIDSTTDRLTALVEIYRMMRPGEPPTREAAEQLFESLFFSEDRYDLSAVGRMKFNSSLGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DII +++ L+D+RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEMTGSGVLSHDDIIEVMRKLIDIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSAFARTNPYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+++ YLSA+EE IAQAN+ L+EDGSF +EL+ R GE L PR+ + Sbjct: 592 RKVVDGKVTDEIDYLSAIEEGQFVIAQANAVLNEDGSFADELITARQKGESGLHPRDHVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V+R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED T+I Sbjct: 772 MPGEPVQRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E + +ARDTKLG EEIT DIPNV E L +DE G++ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELQCVARDTKLGSEEITADIPNVGEAALSKLDESGVVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S D ++ R Sbjct: 952 QLKEAKKDLTEEFSILEGGLVARVRGVLAQAG-------------YSEDKLANMDRQTML 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE +Q +E L QY+ K+ + +F K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 SQTLDDEALQTQLEQLAEQYDELKADFDKKFDTKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEHGEPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ R FL+KV G IS DD V + E Sbjct: 1119 LAAKGIGNKINKMI---KEQQELAKFREFLQKVYDLGDTRQKVDISALTDDEVRTLIENL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E AI +L++ DL ESGQ L+DG TGE F+RPVTVGY+YMLKLN Sbjct: 1176 RDGLPIATPVFDGAPEPAIKELLKLGDLPESGQLTLFDGRTGEKFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|148263134|ref|YP_001229840.1| DNA-directed RNA polymerase subunit beta [Geobacter uraniireducens Rf4] gi|189043857|sp|A5GAY1|RPOB_GEOUR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|146396634|gb|ABQ25267.1| DNA-directed RNA polymerase subunit beta [Geobacter uraniireducens Rf4] Length = 1370 Score = 1648 bits (4268), Expect = 0.0, Method: Composition-based stats. Identities = 719/1364 (52%), Positives = 1003/1364 (73%), Gaps = 11/1364 (0%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK F K +II+IP+LI++QK SY FL +++ + R GL+A FKSVFPI FS A Sbjct: 11 LRKNFAKIKKIIEIPNLIDIQKNSYKRFLQLDVPAEARKYSGLEAVFKSVFPIKDFSETA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE+VSY PK+DV++C R +T+A P+K+ +RL+V+DV++ +SI+DIKEQ +Y Sbjct: 71 SLEYVSYSLGIPKYDVEECHQRGMTFAAPMKVKVRLVVWDVNKEPSTRSIRDIKEQEVYF 130 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++PLMT++GTF+I G +R++VSQLHRSPG+ +DHDKG+ SGK+LY+ R+IP +G W+ Sbjct: 131 GEIPLMTENGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSARVIPYRGSWL 190 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D EFD KDI++VRIDRRRK+P T L ALG ++++L+ FY GD ++ Sbjct: 191 DFEFDHKDILYVRIDRRRKMPATVLLKALGYSTDKLLNFFYKSEEIFFEGDKL-MKIADP 249 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 +L+ K +VD +TGE ++++ +K T ++ + E G+K++ IT + + G + DI Sbjct: 250 ELLTNQKAVVDIVDPNTGEVLVKANRKFTKAAIRKMAEHGIKYIPITIEEVLGKVASHDI 309 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 V+ TGE+ E + + + ++EI I +L++D+++ + +R+T++ DK D Sbjct: 310 VDPATGEVLAECNEELTQVKIDEIKGRGIATFKVLFIDNLHVTSSLRDTILIDKIGSTDD 369 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 AL++IYR +RPGD T A ++F LFF+ ++YDLS VGR+K+N +L L P D + Sbjct: 370 ALIEIYRRLRPGDPPTLKSALALFENLFFNPERYDLSAVGRLKLNYKLGLQIPLDCMTLT 429 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 +ED++ +++ L+DL+NGKG+IDDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER+S Sbjct: 430 REDVLEVVRYLIDLKNGKGSIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSL 489 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 +++++MP DLIN+KPV + V EFF SSQLSQ + N LS +TH RRLSALG GG+ R Sbjct: 490 QEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRE 549 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+++AR+N +GF+ETPYR V +GKVT Sbjct: 550 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRLVKEGKVTT 609 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 +V + SA+EEE IAQAN+ +D DG F + + R +GE +LV R++++ +D +P Q+V Sbjct: 610 EVRFFSALEEEGHAIAQANAEVDSDGRFVADYISARKSGEFVLVGRDELELMDVAPMQLV 669 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S+AASLIPFLENDD+NR LMG NMQRQAVPLL+A++P VGTGME VVA+ SG ++VA+ Sbjct: 670 SVAASLIPFLENDDANRALMGSNMQRQAVPLLRADSPLVGTGMERVVARDSGVSVVARHN 729 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G+VE VDA RIV++ E + D + +GVDIY L+KF RSNQNTC+NQRP+VK+GD V+R+D Sbjct: 730 GVVESVDASRIVVKIDEDEYDETGTGVDIYNLIKFARSNQNTCINQRPVVKIGDHVKRSD 789 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 +IADGPSTD+G+LALG+N+LVAFMPW GYNFEDS+LISER+V +D +TSIHIEEFE +AR Sbjct: 790 VIADGPSTDMGELALGQNVLVAFMPWGGYNFEDSILISERLVKDDRYTSIHIEEFECVAR 849 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLG EEIT DIPN+ EE LK++DE GII +GAEV PGDIL+GKITPKGE+ ++PEEKL Sbjct: 850 DTKLGKEEITADIPNLGEETLKDLDESGIIRIGAEVRPGDILIGKITPKGETQLSPEEKL 909 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFGEKA DVRDTSLRVP GV GTV+ +IF+R G DK+ R+ +E+ + + L +D+ Sbjct: 910 LRAIFGEKAGDVRDTSLRVPPGVEGTVIGAKIFSRKGADKDARTELIEKAEEQKLRKDEQ 969 Query: 973 DEQVILDRNIYSRLMEILCGQNA------VSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 DE I+ + +L ++L G+ A G K ++ + + P +W + ++ Sbjct: 970 DEIRIIRESAVGKLKKLLVGKTAAVKFEGKDGKVLIVKGKAITEEALLSVPVDRWDEISI 1029 Query: 1027 QDEK-VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 D+ V V + I++ F +KI+K++ GDD+PPGV+++VKV++A+KR +Q Sbjct: 1030 ADDDTVDEKVAQILGTLNQQIDIIKYVFDDKIQKLKRGDDLPPGVIKMVKVYIAIKRKLQ 1089 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG+VSRILP EDMP+L+DG PV+IVLNPLGVPSRMNVGQI ETHLGWA Sbjct: 1090 VGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVEIVLNPLGVPSRMNVGQILETHLGWAA 1149 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 G+G +I+ ++ I +++L++V G + + +++ + VA++ K GVP Sbjct: 1150 KGIGWQIEDMLEKNSPQNQI---KTYLKEVYGNKEMNKFLDSLEEEELNNVAKRLKRGVP 1206 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 +++PVF+GA E+ I ML A + +GQ LYDG +G F VTVG +Y+LKL+H+V D Sbjct: 1207 MASPVFEGASEQGIQEMLGKAGFEYTGQVTLYDGKSGVAFKHKVTVGIMYVLKLHHLVDD 1266 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDDV GR Sbjct: 1267 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVAGR 1326 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 TR+YE+IV G T E G PESFNVL+KE+Q+LGL ++L + + Sbjct: 1327 TRMYEAIVKGKHTLEPGLPESFNVLIKELQSLGLDVELLENEEE 1370 >gi|238025924|ref|YP_002910155.1| DNA-directed RNA polymerase subunit beta [Burkholderia glumae BGR1] gi|237875118|gb|ACR27451.1| DNA-directed RNA polymerase, beta subunit [Burkholderia glumae BGR1] Length = 1369 Score = 1648 bits (4268), Expect = 0.0, Method: Composition-based stats. Identities = 702/1375 (51%), Positives = 966/1375 (70%), Gaps = 17/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q S+ FL ++ +R +EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRSIVHQVPFLLATQLESFSTFLQAEVSAAQRKSEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY PP F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYALSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ KF+ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-RDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E L+++ ++I+DI +Y + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITESVLDKLREAKIKDIQTIYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RVDETADKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS IT RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITLKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDE-DGSFTEELVFCRCAGEEILVPREKI 661 RKV DGKVT+ + YLSA+EE IAQAN+S+DE G T+ELV R AGE ++V ++I Sbjct: 598 RKVTDGKVTDQIDYLSAIEEGRYVIAQANASVDEATGELTDELVSAREAGETMMVTPDRI 657 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A Sbjct: 658 QYMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAV 717 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A+R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 718 DSGTTVQAERGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPI 777 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TS Sbjct: 778 VKMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTS 837 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPK Sbjct: 838 IHIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPK 897 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + Sbjct: 898 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIVRDKRAQQIID 957 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ I++ + + RL +L G+ A GPK K T + +S+ W Sbjct: 958 DELKRYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTQIDQAYLSDLDHYHW 1017 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+K Sbjct: 1018 FDIRLADEEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVK 1077 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HL Sbjct: 1078 RRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHL 1137 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA GLG +I ++ + I LR FL K+ E + + DD +L +A + Sbjct: 1138 GWAAKGLGWRIGEML---QRQAKIEELRVFLTKIYNESGRAEDLDSFSDDEILELARNLR 1194 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESG----------QSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE ++ ML +A DE Q LYDG TGE F+R VTV Sbjct: 1195 EGVPFATPVFDGATEEEMSKMLDLAFPDEIAQQLGMTPSKNQVRLYDGRTGEAFERTVTV 1254 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1255 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1314 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1315 QEMLTVKSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1369 >gi|21241730|ref|NP_641312.1| DNA-directed RNA polymerase subunit beta [Xanthomonas axonopodis pv. citri str. 306] gi|41018077|sp|Q8PNT0|RPOB_XANAC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|21107099|gb|AAM35848.1| RNA polymerase beta subunit [Xanthomonas axonopodis pv. citri str. 306] Length = 1383 Score = 1648 bits (4267), Expect = 0.0, Method: Composition-based stats. Identities = 707/1389 (50%), Positives = 968/1389 (69%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ P++R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT +GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EE+L+ F+ + D Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ GV L + D L Sbjct: 241 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+G TGE+ A D I+E L + + + L+V+ ++ Y+ NTL Sbjct: 299 VGRILSHDVVDGSTGELLANANDEINEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A +IK+L ++RNG+G +DDID+LGN Sbjct: 419 DVLGESVLYDKKYFAERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A R G++EQ+DA RIV++ E + +GVD Sbjct: 719 PTLRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A G Sbjct: 959 DVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGG-A 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK ++ + +S W+Q ++DE +E + Q + + E RF +K KI Sbjct: 1018 NLKKGDTVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G VDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGESVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI+ ++ +A +S LR FL + + Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRML---EAQAAVSELRKFLNDIYNHDN 1194 Query: 1181 HTE----KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + D+ +L + + GVP++TPVFDGA E I ML +ADL +SGQ+ L Sbjct: 1195 AINAQRVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADLPQSGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLEN 1365 L ++++LE Sbjct: 1375 LAINMELEE 1383 >gi|33599007|ref|NP_886567.1| DNA-directed RNA polymerase subunit beta [Bordetella bronchiseptica RB50] gi|33575053|emb|CAE30516.1| DNA-directed RNA polymerase beta chain [Bordetella bronchiseptica RB50] Length = 1378 Score = 1647 bits (4266), Expect = 0.0, Method: Composition-based stats. Identities = 699/1375 (50%), Positives = 958/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++ ++P L+ Q SY FL + A +R NEGLQAAF S+ Sbjct: 9 MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTATSDRVNEGLQAAFSSI 68 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P FDV +C R LTYA PL+ +RL++ D +I Sbjct: 69 FPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDR--EVSKPTI 126 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 127 KEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 186 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ R+DRRRK+PVT L A+GM E IL+ F+ + + Sbjct: 187 RVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFELKS 246 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + A G + D G+ ++E K++ + L+ L G++ + + D Sbjct: 247 EGGMMEFVAE-RWKGEMARFDIAD-RDGKVIVEKDKRINAKHLRDLAAGGIQRVSVPEDF 304 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D I E L + + +RDI LY + ++ YI TL Sbjct: 305 LYGRVLAKNIVDPDTGEVVAHANDEITESVLNAMRAANVRDIQTLYTNDLDRGPYISQTL 364 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL Sbjct: 365 RADETADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGR 424 Query: 423 -DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + EDI+ IK+LV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R Sbjct: 425 GDDSTGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVR 484 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 485 VERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRV 544 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR+N YGF+ETP Sbjct: 545 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETP 604 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DGKV++ + YLSA+EE + IAQAN++LD++G F ++LV CR AGE +L + Sbjct: 605 YRKIIDGKVSDQIDYLSAIEESHYVIAQANAALDDEGRFVDDLVACREAGETMLTAPGNV 664 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 665 HYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGVERTVAV 724 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 725 DSGTTVQALRGGVVDHVDADRVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPI 784 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V GD+V + D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TS Sbjct: 785 VARGDKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTS 844 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE V+ARDTKLGPEEITRDI N++E L +D+ GI+ +GAEV+ D+LVGK+TPK Sbjct: 845 IHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGIVYIGAEVSADDVLVGKVTPK 904 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV++F R GI +++R+ S+ Sbjct: 905 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIID 964 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +++ +D +D+ I++ + + R+ ++L G+ GP+ K L+ +++ R QW Sbjct: 965 DELRRYRQDLNDQLRIVENDQFDRIEKMLVGKAVNGGPRKLAKGATLTKAYLADLDRWQW 1024 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ +E K E + + F+ K +K+ GD++PPGVL+++KV++A+K Sbjct: 1025 FDIRLADEQHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVK 1084 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VSRI P EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1085 RRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHL 1144 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G +I ++ D + +R +LEKV T + I D+ VL +A K Sbjct: 1145 GWAAKGVGYRIADMLRDERT-AQAKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELANNLK 1203 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE I ML +A D Q+ LYDG TGE F+RPVT+ Sbjct: 1204 KGVPFATPVFDGATEEEIGKMLELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTI 1263 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y L Sbjct: 1264 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTL 1323 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDD+ GRT+VYE+IV G+ + G PESFNVLVKE+++L L +DLE + Sbjct: 1324 QEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN 1378 >gi|322418357|ref|YP_004197580.1| DNA-directed RNA polymerase subunit beta [Geobacter sp. M18] gi|320124744|gb|ADW12304.1| DNA-directed RNA polymerase, beta subunit [Geobacter sp. M18] Length = 1371 Score = 1647 bits (4266), Expect = 0.0, Method: Composition-based stats. Identities = 722/1364 (52%), Positives = 993/1364 (72%), Gaps = 10/1364 (0%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK F K +IIDIP+LI++QK SY FL ++ D R N GL+A F+SVFPI FS A Sbjct: 11 LRKNFAKIHKIIDIPNLIDIQKNSYKRFLQLDTPVDARKNSGLEAVFRSVFPIRDFSDTA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE+VSY PK+DV++C R +T+A P+K+ +RL+V+DV + G +SI+DIKEQ +Y Sbjct: 71 SLEYVSYSLGAPKYDVEECHQRGMTFAAPMKVKVRLVVWDVSKDPGTRSIRDIKEQEVYF 130 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++PLMT +GTF+I G +R++VSQLHRSPG+ +DHDKG+ SGK+LY+ R+IP +G W+ Sbjct: 131 GEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSARVIPYRGSWL 190 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D EFD KDI++VRIDRRRK+P T L ALG ++ +++ FY G+ L A Sbjct: 191 DFEFDHKDILYVRIDRRRKMPATVLLKALGYSNDALINYFYKSEEVKVGGNGAMTKLVDA 250 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 +L+ K ++ +VD T E ++++ +K T L+ + E G+K + I + + G + DI Sbjct: 251 ELLSSQKATADIVDPGTAEVILKANRKFTKAALRKMAEHGIKEIPIAEEEVVGKVASHDI 310 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 + TGEI +E + I LEE+ I +L++D+++ + R+T++ DK + Sbjct: 311 YDPATGEILVECNEEITPAKLEEMIQKGITSFQVLFIDNLHVTSSFRDTILIDKIGSTDE 370 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 AL++IYR +RPGD T A +F LFF++++YDLS VGR+K+N +L +D P D + Sbjct: 371 ALIEIYRRLRPGDPPTLKSALVLFENLFFNAERYDLSAVGRLKLNYKLGVDVPLDCMTLT 430 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 +EDI+ +++ L++L+NGKG IDDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER+S Sbjct: 431 REDILEVVRYLIELKNGKGNIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSL 490 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 +++++MP DLIN+KPV + V EFF SSQLSQ + N LS +TH RRLSALG GG+ R Sbjct: 491 QEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRE 550 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+++AR+N +GF+ETPYR V +GKVT+ Sbjct: 551 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRVVKEGKVTD 610 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 +V + SA+EEE IAQAN+ +DE G F + + R +GE +LV R++++ +D +P Q+V Sbjct: 611 EVRFFSALEEEGHAIAQANAEMDETGRFMADYISARKSGEFVLVGRDELELMDVAPMQLV 670 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S+AASLIPFLENDD+NR LMG NMQRQAVPLL+A++P VGTGME VVA+ SG + VA+ Sbjct: 671 SVAASLIPFLENDDANRALMGSNMQRQAVPLLRADSPLVGTGMERVVARDSGVSSVARHN 730 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G+VE VDA RIV++ E D + +GVDIY L+KF RSNQNTC+NQRP+VKVGD V+ D Sbjct: 731 GVVESVDASRIVVKIDEDQYDATGTGVDIYNLIKFARSNQNTCINQRPVVKVGDHVKAGD 790 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 IIADGPSTD+G+LALG+N+LVAFMPW GYN+EDS+LISER+V +D +TSIHIEEFE +AR Sbjct: 791 IIADGPSTDMGELALGQNVLVAFMPWGGYNYEDSILISERLVKDDRYTSIHIEEFEAVAR 850 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLG EEIT DIPN+ EE LK++DE GII +GAEV PGDILVGKITPKGE+ ++PEEKL Sbjct: 851 DTKLGKEEITSDIPNLGEETLKDLDESGIIRIGAEVRPGDILVGKITPKGETQLSPEEKL 910 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFGEKA DVRDTSLRVP GV GTV+ +IF+R G DK+ R+ +E+ + + L +D+ Sbjct: 911 LRAIFGEKAGDVRDTSLRVPPGVEGTVIGAKIFSRKGADKDARTEIIEKAEEQRLRKDEQ 970 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKG------FKKSTVLSSDLISEYPRSQWWQFAV 1026 DE I+ + +L ++L G+ A +G K ++ +++ + +W + ++ Sbjct: 971 DEIRIIRDSAIGKLKKLLVGKTAAVKIEGTDGKVLIPKGAAITEEMLKSFSMDRWDEISI 1030 Query: 1027 QDEK-VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 D+ V V I++ F +K++K++ GDD+PPGV+++VKV++A+KR +Q Sbjct: 1031 ADDDTVDEKVAQTLATLNQQIDIIKYVFDDKVQKLRRGDDLPPGVIKMVKVYIAIKRKLQ 1090 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG+VSRILP EDMP+++DG PV+IVLNPLGVPSRMNVGQI ETHLGWA Sbjct: 1091 VGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQILETHLGWAA 1150 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 GLG KI+ + + +I + FL+ I + + ++ VA++ K GVP Sbjct: 1151 RGLGWKIEEFLEKNSPHDEI---KRFLKGTYHDPDMHRFIDKLEGEELINVAKRLKRGVP 1207 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 +++PVF+GA EE+I +M++ A + +GQ LYDG +G+ F VTVG +Y+LKL+H+V D Sbjct: 1208 MASPVFEGASEESIQAMMKQAGFETTGQVTLYDGKSGDKFMHKVTVGIMYVLKLHHLVDD 1267 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDDV GR Sbjct: 1268 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVAGR 1327 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 TR+YE+IV G T E G PESFNVL+KE+Q+LGL ++L Sbjct: 1328 TRMYEAIVKGKHTLEPGLPESFNVLIKELQSLGLDVELLEGDED 1371 >gi|158518624|sp|Q7WRD9|RPOB_BORBR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1370 Score = 1647 bits (4265), Expect = 0.0, Method: Composition-based stats. Identities = 699/1375 (50%), Positives = 958/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++ ++P L+ Q SY FL + A +R NEGLQAAF S+ Sbjct: 1 MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTATSDRVNEGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P FDV +C R LTYA PL+ +RL++ D +I Sbjct: 61 FPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDR--EVSKPTI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ R+DRRRK+PVT L A+GM E IL+ F+ + + Sbjct: 179 RVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFELKS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + A G + D G+ ++E K++ + L+ L G++ + + D Sbjct: 239 EGGMMEFVAE-RWKGEMARFDIAD-RDGKVIVEKDKRINAKHLRDLAAGGIQRVSVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D I E L + + +RDI LY + ++ YI TL Sbjct: 297 LYGRVLAKNIVDPDTGEVVAHANDEITESVLNAMRAANVRDIQTLYTNDLDRGPYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL Sbjct: 357 RADETADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGR 416 Query: 423 -DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + EDI+ IK+LV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R Sbjct: 417 GDDSTGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 477 VERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRV 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR+N YGF+ETP Sbjct: 537 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETP 596 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DGKV++ + YLSA+EE + IAQAN++LD++G F ++LV CR AGE +L + Sbjct: 597 YRKIIDGKVSDQIDYLSAIEESHYVIAQANAALDDEGRFVDDLVACREAGETMLTAPGNV 656 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 657 HYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGVERTVAV 716 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 717 DSGTTVQALRGGVVDHVDADRVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPI 776 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V GD+V + D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TS Sbjct: 777 VARGDKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTS 836 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE V+ARDTKLGPEEITRDI N++E L +D+ GI+ +GAEV+ D+LVGK+TPK Sbjct: 837 IHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGIVYIGAEVSADDVLVGKVTPK 896 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV++F R GI +++R+ S+ Sbjct: 897 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIID 956 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +++ +D +D+ I++ + + R+ ++L G+ GP+ K L+ +++ R QW Sbjct: 957 DELRRYRQDLNDQLRIVENDQFDRIEKMLVGKAVNGGPRKLAKGATLTKAYLADLDRWQW 1016 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ +E K E + + F+ K +K+ GD++PPGVL+++KV++A+K Sbjct: 1017 FDIRLADEQHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVK 1076 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VSRI P EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1077 RRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHL 1136 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G +I ++ D + +R +LEKV T + I D+ VL +A K Sbjct: 1137 GWAAKGVGYRIADMLRDERT-AQAKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELANNLK 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE I ML +A D Q+ LYDG TGE F+RPVT+ Sbjct: 1196 KGVPFATPVFDGATEEEIGKMLELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTI 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y L Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDD+ GRT+VYE+IV G+ + G PESFNVLVKE+++L L +DLE + Sbjct: 1316 QEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN 1370 >gi|94312265|ref|YP_585475.1| DNA-directed RNA polymerase subunit beta [Cupriavidus metallidurans CH34] gi|158564201|sp|Q1LI20|RPOB_RALME RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|93356117|gb|ABF10206.1| RNA polymerase, beta subunit [Cupriavidus metallidurans CH34] Length = 1368 Score = 1647 bits (4265), Expect = 0.0, Method: Composition-based stats. Identities = 701/1375 (50%), Positives = 955/1375 (69%), Gaps = 20/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL P R +EGLQAAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIESYTQFLQAETPPARRKSEGLQAAFNAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI++ +G A +EFVSY P FDV +C R LT+ L+ +RLI+ D + + Sbjct: 61 FPISSHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPG---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEVKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L ++G+ E+IL+ F+ ++ + Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLQS 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G +VD G V+E K++ + ++ L G K + + D Sbjct: 238 EGAQLEFVPERL-RGEVARFDIVD-KNGRVVVEKDKRINAKHIRDLDSAGTKLISVPEDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++I++ +TGE+ A D + E LE + + ++DI LY + ++ YI TL Sbjct: 296 LLGRVLAKNIIDPDTGEVIANANDELTETLLENLREAGVKDIQTLYTNDLDQGPYISQTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL+ Sbjct: 356 RADDTADQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEESYDLSRVGRMKVNSRLSR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + ++ EDI+ IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 PSGEGSMVLQDEDILETIKILVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPREK 660 RKV + K+T+ V YLSA+EE +AQAN+++D +G+ +ELV R E +V ++ Sbjct: 596 RKVENSKLTDQVDYLSAIEEGKYVVAQANATVDAEGNLIDELVSAREGSERETRMVTPDR 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + +ID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+ + P VGTG+E VA Sbjct: 656 VQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGIERTVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA+R+VIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 716 VDSGTAVQATRGGVVDYVDAMRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VKVGD V R D+IADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 776 MVKVGDIVARGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N++E L +DE GI +GAEV GD+LVGK+TP Sbjct: 836 SIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVLVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SG V+DV++F R G+ +++R+ S+ Sbjct: 896 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGIVIDVQVFTREGVTRDKRAQSII 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 ++++ D +D+ I++ + + RL +L + GPK K L+ + +++ + Sbjct: 956 DDELKRYRLDLNDQLRIVEGDAFQRLERMLLDKTVNGGPKKLAKGAKLTREYLADLDKYH 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ DE+V +E++K E + + F+ K +K+ GD++PPGV+++VKV++A+ Sbjct: 1016 WFDIRPADEEVAAQLEAVKEAIEQKRHEFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAV 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1076 KRRLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG++I ++ KA+ LR L ++ E + D VL +A Sbjct: 1136 LGWAARGLGQRIGDML---KASAKAQELRPLLAQIYNESGKAEDLDSLSDAEVLELAGNL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLD----ESG------QSILYDGLTGEPFDRPVT 1250 K GVP +TPVFDGA E I ML +A D E G Q L+DG TGE F+RPVT Sbjct: 1193 KKGVPFATPVFDGAHEAEIRRMLDLAYPDDIAKERGLTASKQQVTLHDGRTGEAFERPVT 1252 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 +G ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YV Sbjct: 1253 LGVMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYV 1312 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 LQEMLT+KSDDV GRT+VYE+IV G + + G PESFNVLVKE+++LG+ IDL+ Sbjct: 1313 LQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLDR 1367 >gi|33591288|ref|NP_878932.1| DNA-directed RNA polymerase subunit beta [Bordetella pertussis Tohama I] gi|41017676|sp|Q7W0R9|RPOB_BORPE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|33570930|emb|CAE40394.1| DNA-directed RNA polymerase beta chain [Bordetella pertussis Tohama I] Length = 1370 Score = 1647 bits (4265), Expect = 0.0, Method: Composition-based stats. Identities = 699/1375 (50%), Positives = 958/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++ ++P L+ Q SY FL + A +R NEGLQAAF S+ Sbjct: 1 MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTATSDRVNEGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P FDV +C R LTYA PL+ +RL++ D +I Sbjct: 61 FPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDR--EVSKPTI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ R+DRRRK+PVT L A+GM E IL+ F+ + + Sbjct: 179 RVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFELKS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + A G + D G+ ++E K++ + L+ L G++ + + D Sbjct: 239 EGGMMEFVAE-RWKGEMARFDIAD-RDGKVIVEKDKRINAKHLRDLAAGGIQRVSVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D I E L + + +RDI LY + ++ YI TL Sbjct: 297 LYGRVLAKNIVDPDTGEVVAHANDEITESVLNAMRAANVRDIQTLYTNDLDRGPYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL Sbjct: 357 RADETADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGR 416 Query: 423 -DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + EDI+ IK+LV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R Sbjct: 417 GDDSTGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 477 VERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRV 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR+N YGF+ETP Sbjct: 537 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETP 596 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DGKV++ + YLSA+EE + IAQAN++LD++G F ++LV CR AGE +L + Sbjct: 597 YRKIIDGKVSDQIDYLSAIEESHYVIAQANAALDDEGRFVDDLVACREAGETMLTAPGNV 656 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 657 HYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGVERTVAV 716 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 717 DSGTTVQALRGGVVDHVDADRVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPI 776 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V GD+V + D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TS Sbjct: 777 VARGDKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTS 836 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE V+ARDTKLGPEEITRDI N++E L +D+ GI+ +GAEV+ D+LVGK+TPK Sbjct: 837 IHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGIVYIGAEVSADDVLVGKVTPK 896 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV++F R GI +++R+ S+ Sbjct: 897 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIID 956 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +++ +D +D+ I++ + + R+ ++L G+ GP+ K L+ +++ R QW Sbjct: 957 DELRRYRQDLNDQLRIVENDQFDRIEKMLVGKTVNGGPRKLAKGATLTKAYLADLDRWQW 1016 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ +E K E + + F+ K +K+ GD++PPGVL+++KV++A+K Sbjct: 1017 FDIRLADEQHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVK 1076 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VSRI P EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1077 RRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHL 1136 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G +I ++ D + +R +LEKV T + I D+ VL +A K Sbjct: 1137 GWAAKGVGYRIADMLRDERT-AQAKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELANNLK 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE I ML +A D Q+ LYDG TGE F+RPVT+ Sbjct: 1196 KGVPFATPVFDGATEEEIGKMLELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTI 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y L Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDD+ GRT+VYE+IV G+ + G PESFNVLVKE+++L L +DLE + Sbjct: 1316 QEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN 1370 >gi|182676590|sp|A6T3L3|RPOB_JANMA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1368 Score = 1647 bits (4265), Expect = 0.0, Method: Composition-based stats. Identities = 700/1374 (50%), Positives = 955/1374 (69%), Gaps = 16/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + ++P L+ Q SY FL + P +R NEGLQ+AF S+ Sbjct: 1 MHYSFTEKKRIRKSFAKRANVHNVPFLLATQLESYHGFLQEDKIPSQRKNEGLQSAFTSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEF+SY P F++ +C R LTYA PL+ +RL++ D + T + Sbjct: 61 FPIVSHNGFARLEFLSYVLGDPPFNIKECQQRGLTYASPLRAKVRLVILDKESPT-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG+LPLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 120 KEMKEQEVYMGELPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI+ R+DRRRK+PVT L A+GM E+IL F+ ++ Sbjct: 180 RIIPYRGSWLDYEFDPKDILFFRVDRRRKMPVTILLKAIGMTPEQILENFFVFDDFALHA 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D A L G + D G+ ++ K++ S ++ ++ G+K + + D Sbjct: 240 DGAEMAFVAERL-RGEVARFDITD-KAGKVLVAKDKRINSKHVRDVEAAGIKNISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ ETGE+ A D + E L + ++ I LY + ++ YI TL Sbjct: 298 LLGRILAKNIVDKETGEVIANANDELTEDLLARLREGKVTHIQTLYTNDLDQGGYISQTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ A + IYR+MRPG+ T E++FN LF+++D+YDLS VGR+K N R+ Sbjct: 358 RMDDTTDQMAAKVAIYRMMRPGEPPTEDSVEALFNGLFYNADRYDLSAVGRMKFNRRIGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + +D++A+IKILV+LRNG+G +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DELTGDMTLSNDDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + D++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV K+T+ + YLSA+EE IAQAN+++D+ G+ ++ELV R AGE ILV E++ Sbjct: 598 RKVEGSKITDQIDYLSAIEEGRYIIAQANATIDKSGALSDELVSAREAGETILVSPERVQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E FVGTG+E VA Sbjct: 658 YMDVAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKAFVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R GIV+ +DA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGIVDYIDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +VGD V ++D+IADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 778 QVGDRVAKHDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLG EEITRDI N++E L +DE GI+ +GAEV GD LVGK+TPKG Sbjct: 838 HIEELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVTAGDTLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIPRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL ++L G+ GPK K ++ + + + + W+ Sbjct: 958 ELQRYRLDLNDQLRIVEGDAFQRLEKMLIGKVVNGGPKKIAKGAKITKEYLDDLDKYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 D+ +E++K + + F+ K +K+ GD++PPGV ++VKV++A+KR Sbjct: 1018 DIRPADDTSANALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VSRILP EDMP + DGTP D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADVVLNPLGVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++N A I+ LR FL + TE + + D +L +A K+ Sbjct: 1138 WAAKGLGLRIGEMLN---AQVQIAELRKFLAAIYNESGKTEDLDSFSDAEILELAGNLKN 1194 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQ----------SILYDGLTGEPFDRPVTVG 1252 GVP +TPVFDGADE ML +A D + +YDG TGE F+R VTVG Sbjct: 1195 GVPFATPVFDGADEGETRRMLDLAYPDHIAKQLGMTASKNQVTMYDGRTGEAFERTVTVG 1254 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1255 YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDLE Sbjct: 1315 EMLTVKSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERD 1368 >gi|325921474|ref|ZP_08183329.1| DNA-directed RNA polymerase subunit beta [Xanthomonas gardneri ATCC 19865] gi|325548021|gb|EGD19020.1| DNA-directed RNA polymerase subunit beta [Xanthomonas gardneri ATCC 19865] Length = 1383 Score = 1647 bits (4264), Expect = 0.0, Method: Composition-based stats. Identities = 705/1389 (50%), Positives = 968/1389 (69%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ ++R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEQNKRKDLGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT +GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG ++EE+L+ F+ + D Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLAEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ GV L + D L Sbjct: 241 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 ++ D+V+ TGE+ A D I E L + + + L+V+ ++ Y+ NTL Sbjct: 299 VTRILSHDVVDSSTGELLANANDEITEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A ++K+L ++RNG+G +DDID+LGN Sbjct: 419 EVLGESVLYDKKYFAERNDEESKRLVAEHTDTSDILEVLKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRFQGESLLKPPAEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A R G++EQ+DA RIV++ E + +GVD Sbjct: 719 PTLRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A GP Sbjct: 959 DVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGP- 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK ++ + +S W+Q ++DE +E + Q + + E RF +K KI Sbjct: 1018 NLKKGDNVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G PVDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGEPVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI+ ++ +A +S LR FL+ + S Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRML---EAQAAVSELRKFLDDIYNHDS 1194 Query: 1181 HTE----KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + D+ +L + + GVP++TPVFDGA E I ML +A+L +SGQ+ L Sbjct: 1195 AINAQRVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELAELPQSGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLEN 1365 L ++++LE Sbjct: 1375 LAINMELEE 1383 >gi|330815232|ref|YP_004358937.1| DNA-directed RNA polymerase, beta subunit [Burkholderia gladioli BSR3] gi|327367625|gb|AEA58981.1| DNA-directed RNA polymerase, beta subunit [Burkholderia gladioli BSR3] Length = 1369 Score = 1646 bits (4263), Expect = 0.0, Method: Composition-based stats. Identities = 698/1376 (50%), Positives = 963/1376 (69%), Gaps = 19/1376 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q S+ FL ++ +R +EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRSIVHQVPFLLATQLESFSTFLQAEVSAAQRKSEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PV+ L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVSILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ KF+ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDISD-RDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E L+++ ++I++I +Y + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITESVLDKLRDAKIKEIQTIYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RVDETADKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEIVGPMTLLDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDED-GSFTEELVFCRCAGEEILVPREKI 661 RKV D KVT+ + YLSA+EE IAQAN+S+DE+ G T+ELV R AGE ++V ++I Sbjct: 598 RKVTDSKVTDQIDYLSAIEEGRYVIAQANASVDENTGELTDELVSAREAGETMMVTPDRI 657 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A Sbjct: 658 QYMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAV 717 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 718 DSGTTVQAYRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPI 777 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE +V++D +TS Sbjct: 778 VKMGDKVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISENVVADDRYTS 837 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD++VGK+TPK Sbjct: 838 IHIEELNVVARDTKLGPEEITRDISNLAEIQLGRLDESGIVYIGAEVEAGDVMVGKVTPK 897 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + Sbjct: 898 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIVRDKRAQQIID 957 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ I++ + + RL +L G+ A GPK K T + +S+ W Sbjct: 958 DELKRYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIDQAYLSDLDHYHW 1017 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+K Sbjct: 1018 FDIRLADEEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVK 1077 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HL Sbjct: 1078 RRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHL 1137 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA GLG +I ++ I LR FL K+ E + + DD +L +A+ + Sbjct: 1138 GWAAKGLGWRIGEML---ARQAKIEELRVFLTKIYNESGRAEDLESFSDDEILELAKNLR 1194 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDES-----G------QSILYDGLTGEPFDRPVT 1250 GVP +TPVFDGA EE ++ ML +A + G Q LYDG TGE F+R VT Sbjct: 1195 EGVPFATPVFDGATEEEMSKMLDLA-FPDDIAQQLGMTPSKNQVRLYDGRTGEAFERTVT 1253 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VGY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YV Sbjct: 1254 VGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYV 1313 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 LQEMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1314 LQEMLTVKSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1369 >gi|190151057|ref|YP_001969582.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264420|ref|ZP_07546006.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189916188|gb|ACE62440.1| DNA-directed RNA polymerase beta chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870236|gb|EFN01994.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 1361 Score = 1646 bits (4263), Expect = 0.0, Method: Composition-based stats. Identities = 711/1369 (51%), Positives = 976/1369 (71%), Gaps = 28/1369 (2%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A ++ R+RK FGK P+++++P L+ +Q SY+ F+ + +GL+AAF+ Sbjct: 18 LAMAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSYEKFIQRDSD----GQQGLEAAFR 73 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI + +G+ L++VSYE P FDV +C R TYA PL++ LRL+ FD + G Sbjct: 74 SVFPIVSNNGSTELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG-- 131 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 132 TVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 191 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEILS F+ K+ + Sbjct: 192 NARIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILSMFFDKVNFEI 251 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + L L G + + G+ +E G+++T+ +++L++ G+ + + Sbjct: 252 QDNKLLMTLVPERL-RGETAAFDIE--ANGKVYVERGRRITARHIRTLEKDGITQIEVPV 308 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + + G A+D V+ TGE+ A I + L ++ + ++I +L+ + +++ YI Sbjct: 309 EYIVGKVAAKDYVDLSTGELVCPANMEISMEMLAKLSQAGYKEIEVLFTNDLDHGPYISE 368 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D DR AL++IYR+MRPG+ T AE++F+ +FF +D+YDLS VGR+K N L Sbjct: 369 TLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSL 428 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NL+ + +DI ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+ Sbjct: 429 NLEEGVGSGILSNDDITGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLV 488 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER+++ER+S D+D + PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR Sbjct: 489 RVERAVRERLSLGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRR 548 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ET Sbjct: 549 ISALGPGGLTRERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLET 608 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPRE 659 P+RKV +G+VT D+ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E Sbjct: 609 PFRKVVNGQVTEDIEYLSAIEEGNYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYKPE 668 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 I ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME + Sbjct: 669 DIHYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPI 728 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SG AIVAKR GIV++VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ Sbjct: 729 ALDSGVAIVAKRGGIVQRVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQI 788 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P V +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED F Sbjct: 789 PCVNLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRF 848 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 T+IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+T Sbjct: 849 TTIHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVT 908 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ + Sbjct: 909 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEI 968 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 E Q++ +D +E IL+ +++R+ +L S + + R Sbjct: 969 EEMQLKEAKKDLTEELEILEAGLFTRVRNLLIEGGV-------------SEAELDKVARE 1015 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 +W + + DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A Sbjct: 1016 KWLEQTLDDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLA 1075 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 ++R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ET Sbjct: 1076 VRRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILET 1135 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVA 1197 HLG A G+G +I ++I K ++ LR +++K G GS + +S + D+ VLR+A Sbjct: 1136 HLGLAAKGIGDQINAMI---KQQQSVAKLREYIQKAYDLGHGSQSVDLSTFTDEEVLRLA 1192 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 E + G+P++TPVFDGA E I +L + L SGQ L+DG TGE F+RPVTVGY+YML Sbjct: 1193 ENLRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYML 1252 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+ Sbjct: 1253 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1312 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 KSDDV GRT++Y++IV G E G PESFNVL+KE++ALG+ ++L+ Sbjct: 1313 KSDDVNGRTKMYKNIVDGTHQMEPGMPESFNVLLKEIRALGIDMELDEE 1361 >gi|78046547|ref|YP_362722.1| DNA-directed RNA polymerase subunit beta [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|88909647|sp|Q3BWZ1|RPOB_XANC5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|78034977|emb|CAJ22622.1| DNA directed RNA polymerase (beta subunit) [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1383 Score = 1646 bits (4262), Expect = 0.0, Method: Composition-based stats. Identities = 706/1389 (50%), Positives = 967/1389 (69%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ P++R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT +GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EE+L+ F+ + D Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ GV L + D L Sbjct: 241 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+G TGE+ A D I+E L + + + L+V+ ++ Y+ NTL Sbjct: 299 VGRILSHDVVDGSTGELLANANDEINEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A +IK+L ++RNG+G +DDID+LGN Sbjct: 419 DVLGESVLYDKKYFAERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+ ALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVFALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A R G++EQ+DA RIV++ E + +GVD Sbjct: 719 PTLRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A G Sbjct: 959 DVQVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGG-A 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK ++ + +S W+Q ++DE +E + Q + + E RF +K KI Sbjct: 1018 NLKKGDTVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G VDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGESVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI+ ++ +A +S LR FL + + Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRML---EAQAAVSELRKFLNDIYNHDN 1194 Query: 1181 HTE----KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + D+ +L + + GVP++TPVFDGA E I ML +ADL +SGQ+ L Sbjct: 1195 AINAQRVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADLPQSGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLEN 1365 L ++++LE Sbjct: 1375 LAINMELEE 1383 >gi|164686033|ref|ZP_01947509.2| DNA-directed RNA polymerase, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165918641|ref|ZP_02218727.1| DNA-directed RNA polymerase, beta subunit [Coxiella burnetii RSA 334] gi|164601588|gb|EAX31867.2| DNA-directed RNA polymerase, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165917669|gb|EDR36273.1| DNA-directed RNA polymerase, beta subunit [Coxiella burnetii RSA 334] Length = 1375 Score = 1645 bits (4261), Expect = 0.0, Method: Composition-based stats. Identities = 717/1370 (52%), Positives = 985/1370 (71%), Gaps = 10/1370 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNP-EIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + + + R R GK EI+ P L+E Q SY FL +IA ++R + GL AAFK Sbjct: 11 SATISYPEKRRARVNLGKREVEILKTPYLLETQIESYRKFLQKDIAAEKREDNGLHAAFK 70 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPK--FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 SVFPIT++SG A+LE+V Y FDV++C R LTYA PLK+ +RL+++D + G Sbjct: 71 SVFPITSYSGYAVLEYVGYSLGGESTLFDVEECKLRGLTYAAPLKVNMRLVIYDKEAPAG 130 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 K+IKDIKEQ +YMG++PLMT+ G+ VI G +R+VVSQLHRSPG+ F+HDKG+ SGKL Sbjct: 131 KKAIKDIKEQEVYMGEIPLMTETGSLVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKL 190 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 LY+ R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG D+E+IL FY + Sbjct: 191 LYSARVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPATVILRALGYDTEQILDMFYKTNHF 250 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + L L G + D G+ ++E+ +++++ ++ +++ + L + Sbjct: 251 HLNQETVTLDLIPQRL-RGELAVVEIKDKK-GKVIVEANRRISARHIRLIEKAEINKLEL 308 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G + + I++ ETGEI A + I + L+ + ++ + LY++ + Y+ Sbjct: 309 PDDYLYGKVIGKTIIDKETGEIIAHANEEITAELLKNLRATKTASLDTLYINEIECGPYV 368 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 +TL D ++ +AL++IYR+MRPG+ T AES+F LFF ++Y LS VGR+K N Sbjct: 369 SDTLRLDTTTNQLEALVEIYRIMRPGEPPTKEAAESLFENLFFSPERYSLSAVGRMKFNR 428 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R+ + + KEDI+ ++++LVD+R+GKG +DDID+LGNRR+RSVGEM +NQ+R+G Sbjct: 429 RVGRKELTGLDVLSKEDIVDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFRVG 488 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L+R+ER++K+R+S D++++MPQDL+NAKPV +A+ EFF SSQLSQ + N LS ITH Sbjct: 489 LVRVERAVKDRLSLADVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHK 548 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL FAR N YGF+ Sbjct: 549 RRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFL 608 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV D VT++ YLSA+EE + YIAQAN+++DE G ++L+ CR GE L Sbjct: 609 ETPYRKVVDRVVTDETEYLSAIEEGDYYIAQANTNVDEKGRLVDDLISCRYKGEFTLTTP 668 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +KI+++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP ++ E P VGTGME Sbjct: 669 DKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLVGTGMERT 728 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VA SG ++AKR+G+++ VDA RIV+R + D GVDIY L KF RSNQNTC+N Sbjct: 729 VAVDSGVTVIAKRSGVIDSVDASRIVVRVDRKETEDDDDIGVDIYNLTKFTRSNQNTCIN 788 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q P+V+VGD+V++ D++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V ED Sbjct: 789 QHPIVEVGDKVQKGDVLADGPSTDIGELALGQNLLVAFMPWNGYNFEDSILISERLVEED 848 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 FT+IHI+EF +ARDTKLGPEEIT DIPNV E L +DE GI+ +GAEVN GDILVGK Sbjct: 849 RFTTIHIQEFTCVARDTKLGPEEITSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGK 908 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G++GTV+DVRIF R G+ K+ER++ Sbjct: 909 VTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVTPGITGTVIDVRIFTREGVKKDERTL 968 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 +E+ ++ + +D +DE + + ++ L ++L G+ A GP K T ++ +++ P Sbjct: 969 EIEKAELSKVEKDLNDELRVREDALFENLEKLLTGRVAAGGPNKLAKGTKITKSYLADLP 1028 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 R +W++ +QD+ + +E+ ++ + + + K+ +K+ G D+ PGV+++VKV+ Sbjct: 1029 RQKWFEIRLQDDAATKRLEASHEHFKELRETRDAKLKDSRQKLTQGGDLAPGVIKIVKVY 1088 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR IQ GDKMAGRHGNKG++S I+P EDMP+L+DGTPVDIVLNPLGVPSRMN+GQ+ Sbjct: 1089 LAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVL 1148 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE-KISDYDDDSVLRV 1196 ETHLGWA GLGKKI +I + D LR L+ + + +D ++ + Sbjct: 1149 ETHLGWAAKGLGKKIGEMI---EKGADAKELRKSLKPIYDLSKTQRFDLEALEDPEIVTL 1205 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A+ + GVP+S+PVFDGA EE I +L+MADL SGQ+ LYDG TG+ FDR VTVGY+YM Sbjct: 1206 AKNLRKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYM 1265 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1266 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1325 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +KSDDV GRTR+Y++IV G+ + G PESFNVLVKE+++L + I LEN Sbjct: 1326 VKSDDVAGRTRMYKNIVDGDHRMDAGMPESFNVLVKEIRSLAIDIGLEND 1375 >gi|307253400|ref|ZP_07535271.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859079|gb|EFM91121.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 1361 Score = 1645 bits (4261), Expect = 0.0, Method: Composition-based stats. Identities = 710/1369 (51%), Positives = 976/1369 (71%), Gaps = 28/1369 (2%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A ++ R+RK FGK P+++++P L+ +Q SY+ F+ + +GL+AAF+ Sbjct: 18 LAMAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSYEKFIQRDSD----GQQGLEAAFR 73 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI + +G+ L++VSYE P FDV +C R TYA PL++ LRL+ FD + G Sbjct: 74 SVFPIVSNNGSTELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG-- 131 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 132 TVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 191 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEILS F+ K+ + Sbjct: 192 NARIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILSMFFDKVNFEI 251 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + L L G + + G+ +E G+++T+ +++L++ G+ + + Sbjct: 252 QDNKLLMTLVPERL-RGETAAFDIE--ANGKVYVERGRRITARHIRTLEKDGITQIEVPV 308 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + + G A+D V+ TGE+ A I + L ++ + ++I +L+ + +++ YI Sbjct: 309 EYIVGKVAAKDYVDLSTGELVCPANMEISMEMLAKLSQAGYKEIEVLFTNDLDHGPYISE 368 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D DR AL++IYR+MRPG+ T AE++F+ +FF +D+YDLS VGR+K N L Sbjct: 369 TLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSL 428 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NL+ + +DI ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+ Sbjct: 429 NLEEGVGSGILSNDDITGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLV 488 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER+++ER+S D+D + PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR Sbjct: 489 RVERAVRERLSLGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRR 548 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ET Sbjct: 549 ISALGPGGLTRERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLET 608 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPRE 659 P+RKV +G+VT D+ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E Sbjct: 609 PFRKVVNGQVTEDIEYLSAIEEGNYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYKPE 668 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 I ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME + Sbjct: 669 DIHYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPI 728 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SG AIVAKR GIV++VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ Sbjct: 729 ALDSGVAIVAKRGGIVQRVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQI 788 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P V +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED F Sbjct: 789 PCVNLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRF 848 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 T+IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+T Sbjct: 849 TTIHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVT 908 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ + Sbjct: 909 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEI 968 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 E Q++ +D +E IL+ +++R+ +L S + + R Sbjct: 969 EEMQLKEAKKDLTEELEILEAGLFTRVRNLLIEGGV-------------SEAELDKVARE 1015 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 +W + + DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A Sbjct: 1016 KWLEQTLDDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLA 1075 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 ++R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ET Sbjct: 1076 VRRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILET 1135 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVA 1197 HLG A G+G +I ++I K ++ LR +++K G GS + +S + D+ V+R+A Sbjct: 1136 HLGLAAKGIGDQINAMI---KQQQSVAKLREYIQKAYDLGHGSQSVDLSTFTDEEVMRLA 1192 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 E + G+P++TPVFDGA E I +L + L SGQ L+DG TGE F+RPVTVGY+YML Sbjct: 1193 ENLRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYML 1252 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+ Sbjct: 1253 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1312 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 KSDDV GRT++Y++IV G E G PESFNVL+KE++ALG+ ++L+ Sbjct: 1313 KSDDVNGRTKMYKNIVDGTHQMEPGMPESFNVLLKEIRALGIDMELDEE 1361 >gi|166710820|ref|ZP_02242027.1| DNA-directed RNA polymerase subunit beta [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1383 Score = 1645 bits (4261), Expect = 0.0, Method: Composition-based stats. Identities = 706/1389 (50%), Positives = 967/1389 (69%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ P +R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPTKRKDLGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT +GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG ++EE+L+ F+ + D Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLAEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ GV L + D L Sbjct: 241 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+G TGE+ A D I E L + + + L+V+ ++ Y+ NTL Sbjct: 299 VGRILSHDVVDGSTGELLANANDEISEDQLTAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A +IK+L ++RNG+G +DDID+LGN Sbjct: 419 DVLGESVLYDKKYFAERNDEESKRLAAEHTDTSDILEVIKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLA 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A R G++EQ+DA RIV++ E + +GVD Sbjct: 719 PTLRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A G Sbjct: 959 DVQVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGG-A 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK ++ + +S W+Q ++DE +E + Q + + E RF +K KI Sbjct: 1018 NLKKGDSVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G VDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGESVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI+ ++ +A +S LR FL+ + + Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRML---EAQAAVSELRKFLDDIYNHDN 1194 Query: 1181 HTE----KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + D+ +L + + GVP++TPVFDGA E I ML +ADL +SGQ+ L Sbjct: 1195 AINAQRVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADLPQSGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLEN 1365 L ++++LE Sbjct: 1375 LAINMELEE 1383 >gi|224493270|sp|P0C8S4|RPOB_COXBU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1375 Score = 1645 bits (4261), Expect = 0.0, Method: Composition-based stats. Identities = 718/1370 (52%), Positives = 985/1370 (71%), Gaps = 10/1370 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNP-EIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + + + R R GK EI+ P L+E Q SY FL +IA ++R + GL AAFK Sbjct: 11 SATISYPEKRRARVNLGKREVEILKTPYLLETQIESYRKFLQKDIAAEKREDNGLHAAFK 70 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPK--FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 SVFPIT++SG A+LE+V Y FDV++C R LTYA PLK+ +RL+++D + G Sbjct: 71 SVFPITSYSGYAVLEYVGYSLGGESTLFDVEECKLRGLTYAAPLKVNMRLVIYDKEAPAG 130 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 K+IKDIKEQ +YMG++PLMT+ G+ VI G +R+VVSQLHRSPG+ F+HDKG+ SGKL Sbjct: 131 KKAIKDIKEQEVYMGEIPLMTETGSLVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKL 190 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 LY+ R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG D+E+IL FY + Sbjct: 191 LYSARVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPATVILRALGYDTEQILDMFYKTNHF 250 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + L L G + D G+ ++E+ +++++ ++ +++ + L + Sbjct: 251 HLNQETVTLDLIPQRL-RGELAVVEIKDKK-GKVIVEANRRISARHIRLIEKAEINKLEL 308 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G + + I++ ETGEI A + I + L+ + ++ + LY++ + Y+ Sbjct: 309 PDDYLYGKVIGKTIIDKETGEIIAHANEEITAELLKNLRATKTASLDTLYINEIECGPYV 368 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 +TL D ++ +AL++IYR+MRPG+ T AES+F LFF ++Y LS VGR+K N Sbjct: 369 SDTLRLDTTTNQLEALVEIYRIMRPGEPPTKEAAESLFENLFFSPERYSLSAVGRMKFNR 428 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R+ + + KEDI+ ++++LVD+R+GKG +DDID+LGNRR+RSVGEM +NQ+R+G Sbjct: 429 RVGRKELTGLDVLSKEDIVDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFRVG 488 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L+R+ER++K+R+S D++++MPQDL+NAKPV +A+ EFF SSQLSQ + N LS ITH Sbjct: 489 LVRVERAVKDRLSLADVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHK 548 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL FAR N YGF+ Sbjct: 549 RRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFL 608 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV D VT++ YLSA+EE + YIAQAN+++DE G ++L+ CR GE L Sbjct: 609 ETPYRKVVDRVVTDETEYLSAIEEGDYYIAQANTNVDEKGRLVDDLISCRYKGEFTLTTP 668 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +KI+++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP ++ E P VGTGME Sbjct: 669 DKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLVGTGMERT 728 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VA SG ++AKR+G+++ VDA RIV+R + D GVDIY L KF RSNQNTC+N Sbjct: 729 VAVDSGVTVIAKRSGVIDSVDASRIVVRVDRKETEDDDDIGVDIYNLTKFTRSNQNTCIN 788 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q P+V+VGD+V++ D++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V ED Sbjct: 789 QHPIVEVGDKVQKGDVLADGPSTDIGELALGQNLLVAFMPWNGYNFEDSILISERLVEED 848 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 FT+IHI+EF +ARDTKLGPEEIT DIPNV E L +DE GI+ +GAEVN GDILVGK Sbjct: 849 RFTTIHIQEFTCVARDTKLGPEEITSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGK 908 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G++GTV+DVRIF R GI K+ER++ Sbjct: 909 VTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVTPGITGTVIDVRIFTREGIKKDERTL 968 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 +E+ ++ + +D +DE + + ++ L ++L G+ A GP K T ++ +++ P Sbjct: 969 EIEKAELSKVEKDLNDELRVREDALFENLEKLLTGRVAAGGPNKLAKGTKITKSYLADLP 1028 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 R +W++ +QD+ + +E+ ++ + + + K+ +K+ G D+ PGV+++VKV+ Sbjct: 1029 RQKWFEIRLQDDAATKRLEASHEHFKELRETRDAKLKDSRQKLTQGGDLAPGVIKIVKVY 1088 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR IQ GDKMAGRHGNKG++S I+P EDMP+L+DGTPVDIVLNPLGVPSRMN+GQ+ Sbjct: 1089 LAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVL 1148 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE-KISDYDDDSVLRV 1196 ETHLGWA GLGKKI +I + D LR L+ + + +D ++ + Sbjct: 1149 ETHLGWAAKGLGKKIGEMI---EKGADAKELRKSLKPIYDLSKTQRFDLEALEDPEIVTL 1205 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A+ + GVP+S+PVFDGA EE I +L+MADL SGQ+ LYDG TG+ FDR VTVGY+YM Sbjct: 1206 AKNLRKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYM 1265 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1266 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1325 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +KSDDV GRTR+Y++IV G+ + G PESFNVLVKE+++L + I LEN Sbjct: 1326 VKSDDVAGRTRMYKNIVDGDHRMDAGMPESFNVLVKEIRSLAIDIGLEND 1375 >gi|212218065|ref|YP_002304852.1| DNA-directed RNA polymerase subunit beta [Coxiella burnetii CbuK_Q154] gi|212012327|gb|ACJ19707.1| DNA-directed RNA polymerase beta chain [Coxiella burnetii CbuK_Q154] Length = 1377 Score = 1645 bits (4260), Expect = 0.0, Method: Composition-based stats. Identities = 717/1370 (52%), Positives = 985/1370 (71%), Gaps = 10/1370 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNP-EIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + + + R R GK EI+ P L+E Q SY FL +IA ++R + GL AAFK Sbjct: 13 SATISYPEKRRARVNLGKREVEILKTPYLLETQIESYRKFLQKDIAAEKREDNGLHAAFK 72 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPK--FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 SVFPIT++SG A+LE+V Y FDV++C R LTYA PLK+ +RL+++D + G Sbjct: 73 SVFPITSYSGYAVLEYVGYSLGGESTLFDVEECKLRGLTYAAPLKVNMRLVIYDKEAPAG 132 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 K+IKDIKEQ +YMG++PLMT+ G+ VI G +R+VVSQLHRSPG+ F+HDKG+ SGKL Sbjct: 133 KKAIKDIKEQEVYMGEIPLMTETGSLVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKL 192 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 LY+ R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG D+E+IL FY + Sbjct: 193 LYSARVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPATVILRALGYDTEQILDMFYKTNHF 252 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + L L G + D G+ ++E+ +++++ ++ +++ + L + Sbjct: 253 HLNQETVTLDLIPQRL-RGELAVVEIKDKK-GKVIVEANRRISARHIRLIEKAEINKLEL 310 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G + + I++ ETGEI A + I + L+ + ++ + LY++ + Y+ Sbjct: 311 PDDYLYGKVIGKTIIDKETGEIIAHANEEITAELLKNLRATKTASLDTLYINEIECGPYV 370 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 +TL D ++ +AL++IYR+MRPG+ T AES+F LFF ++Y LS VGR+K N Sbjct: 371 SDTLRLDTTTNQLEALVEIYRIMRPGEPPTKEAAESLFENLFFSPERYSLSAVGRMKFNR 430 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R+ + + KEDI+ ++++LVD+R+GKG +DDID+LGNRR+RSVGEM +NQ+R+G Sbjct: 431 RVGRKELTGLDVLSKEDIVDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFRVG 490 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L+R+ER++K+R+S D++++MPQDL+NAKPV +A+ EFF SSQLSQ + N LS ITH Sbjct: 491 LVRVERAVKDRLSLADVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHK 550 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL FAR N YGF+ Sbjct: 551 RRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFL 610 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV D VT++ YLSA+EE + YIAQAN+++DE G ++L+ CR GE L Sbjct: 611 ETPYRKVVDRVVTDETEYLSAIEEGDYYIAQANTNVDEKGRLVDDLISCRYKGEFTLTTP 670 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +KI+++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP ++ E P VGTGME Sbjct: 671 DKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLVGTGMERT 730 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VA SG ++AKR+G+++ VDA RIV+R + D GVDIY L KF RSNQNTC+N Sbjct: 731 VAVDSGVTVIAKRSGVIDSVDASRIVVRVDRKETEDDDDIGVDIYNLTKFTRSNQNTCIN 790 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q P+V+VGD+V++ D++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V ED Sbjct: 791 QHPIVEVGDKVQKGDVLADGPSTDIGELALGQNLLVAFMPWNGYNFEDSILISERLVEED 850 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 FT+IHI+EF +ARDTKLGPEEIT DIPNV E L +DE GI+ +GAEVN GDILVGK Sbjct: 851 RFTTIHIQEFTCVARDTKLGPEEITSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGK 910 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G++GTV+DVRIF R G+ K+ER++ Sbjct: 911 VTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVTPGITGTVIDVRIFTREGVKKDERTL 970 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 +E+ ++ + +D +DE + + ++ L ++L G+ A GP K T ++ +++ P Sbjct: 971 EIEKAELSKVEKDLNDELRVREDALFENLEKLLTGRVAAGGPNKLAKGTKITKSYLADLP 1030 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 R +W++ +QD+ + +E+ ++ + + + K+ +K+ G D+ PGV+++VKV+ Sbjct: 1031 RQKWFEIRLQDDAATKRLEASHEHFKELRETRDAKLKDSRQKLTQGGDLAPGVIKIVKVY 1090 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR IQ GDKMAGRHGNKG++S I+P EDMP+L+DGTPVDIVLNPLGVPSRMN+GQ+ Sbjct: 1091 LAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVL 1150 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE-KISDYDDDSVLRV 1196 ETHLGWA GLGKKI +I + D LR L+ + + +D ++ + Sbjct: 1151 ETHLGWAAKGLGKKIGEMI---EKGADAKELRKSLKPIYDLSKTQRFDLEALEDPEIVTL 1207 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A+ + GVP+S+PVFDGA EE I +L+MADL SGQ+ LYDG TG+ FDR VTVGY+YM Sbjct: 1208 AKNLRKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYM 1267 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1268 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1327 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +KSDDV GRTR+Y++IV G+ + G PESFNVLVKE+++L + I LEN Sbjct: 1328 VKSDDVAGRTRMYKNIVDGDHRMDAGMPESFNVLVKEIRSLAIDIGLEND 1377 >gi|21230357|ref|NP_636274.1| DNA-directed RNA polymerase subunit beta [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|41018075|sp|Q8PC56|RPOB_XANCP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|21111911|gb|AAM40198.1| RNA polymerase beta subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 1387 Score = 1645 bits (4260), Expect = 0.0, Method: Composition-based stats. Identities = 707/1389 (50%), Positives = 972/1389 (69%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ P++R + GL AA KSVF Sbjct: 7 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHAALKSVF 66 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 67 PISSYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 124 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT++GTF++ G +R++ SQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 125 YVKEQEVYLGEIPLMTENGTFIVNGTERVIFSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 184 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG ++EE+L+ F+ + D Sbjct: 185 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLAEFFEINTFHINPD 244 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ GV L + D L Sbjct: 245 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYL 302 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+G TGE+ A D I E L + + + L+V+ ++ Y+ NTL Sbjct: 303 VGRILSHDVVDGSTGELLANANDEISEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 362 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 363 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 422 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A +IK+L ++RNG+G +DDID+LGN Sbjct: 423 EVLGESVLYDKKYFAERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHLGN 482 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 483 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 542 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 543 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 602 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D T Sbjct: 603 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLT 662 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 663 EQFVPCRFQGESLLKPPAEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 722 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A+R G++EQ+DA RIV++ E + +GVD Sbjct: 723 PTLRSQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 782 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 783 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 842 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 843 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 902 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 903 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 962 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A GP Sbjct: 963 DVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGP- 1021 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK ++ + +S W+Q ++D+ +E + Q + + E RF +K KI Sbjct: 1022 NLKKGDNVTDAYLDGLKKSDWFQLRMKDDDAADAIERAQKQIQAHEKEFEARFADKRGKI 1081 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G PVDI Sbjct: 1082 TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGEPVDI 1141 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI+ ++ +A +S LR FL+ + S Sbjct: 1142 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRML---EAQTAVSELRKFLDDIYNHDS 1198 Query: 1181 HTE----KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + D+ +L + + GVP++TPVFDGA E I ML +A+L +SGQ+ L Sbjct: 1199 AINAERVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELAELPQSGQTQL 1258 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1259 YDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1318 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1319 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1378 Query: 1357 LGLSIDLEN 1365 L ++++LE Sbjct: 1379 LAINMELEE 1387 >gi|161831303|ref|YP_001596175.1| DNA-directed RNA polymerase subunit beta [Coxiella burnetii RSA 331] gi|182676561|sp|A9NAL4|RPOB_COXBR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|161763170|gb|ABX78812.1| DNA-directed RNA polymerase, beta subunit [Coxiella burnetii RSA 331] Length = 1375 Score = 1645 bits (4260), Expect = 0.0, Method: Composition-based stats. Identities = 717/1370 (52%), Positives = 985/1370 (71%), Gaps = 10/1370 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNP-EIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + + + R R GK EI+ P L+E Q SY FL +IA ++R + GL AAFK Sbjct: 11 SATISYPEKRRARVNLGKREVEILKTPYLLETQIESYRKFLQKDIAAEKREDNGLHAAFK 70 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPK--FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 SVFPIT++SG A+LE+V Y FDV++C R LTYA PLK+ +RL+++D + G Sbjct: 71 SVFPITSYSGYAVLEYVGYSLGGESTLFDVEECKLRGLTYAAPLKVNMRLVIYDKEAPAG 130 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 K+IKDIKEQ +YMG++PLMT+ G+ VI G +R+VVSQLHRSPG+ F+HDKG+ SGKL Sbjct: 131 KKAIKDIKEQEVYMGEIPLMTETGSLVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKL 190 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 LY+ R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG D+E+IL FY + Sbjct: 191 LYSARVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPATVILRALGYDTEQILDMFYKTNHF 250 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + L L G + D G+ ++E+ +++++ ++ +++ + L + Sbjct: 251 HLNQETVTLDLIPQRL-RGELAVVEIKDKK-GKVIVEANRRISARHIRLIEKAEINKLEL 308 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G + + I++ ETGEI A + I + L+ + ++ + LY++ + Y+ Sbjct: 309 PDDYLYGKVIGKTIIDKETGEIIAHANEEITAELLKNLRATKTASLDTLYINEIECGPYV 368 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 +TL D ++ +AL++IYR+MRPG+ T AES+F LFF ++Y LS VGR+K N Sbjct: 369 SDTLRLDTTTNQLEALVEIYRIMRPGEPPTKEAAESLFENLFFSPERYSLSAVGRMKFNR 428 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R+ + + KEDI+ ++++LVD+R+GKG +DDID+LGNRR+RSVGEM +NQ+R+G Sbjct: 429 RVGRKELTGLDVLSKEDIVDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFRVG 488 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L+R+ER++K+R+S D++++MPQDL+NAKPV +A+ EFF SSQLSQ + N LS ITH Sbjct: 489 LVRVERAVKDRLSLADVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHK 548 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL FAR N YGF+ Sbjct: 549 RRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFL 608 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV D VT++ YLSA+EE + YIAQAN+++D G ++L+ CR GE L Sbjct: 609 ETPYRKVVDRVVTDETEYLSAIEEGDYYIAQANTNVDGKGRLVDDLISCRYKGEFTLTTP 668 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +KI+++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP ++ E P VGTGME Sbjct: 669 DKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLVGTGMERT 728 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VA SG ++AKR+G+++ VDA RIV+R + D GVDIY L KF RSNQNTC+N Sbjct: 729 VAVDSGVTVIAKRSGVIDSVDASRIVVRVDRKETEDDDDIGVDIYNLTKFTRSNQNTCIN 788 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q P+V+VGD+V++ D++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V ED Sbjct: 789 QHPIVEVGDKVQKGDVLADGPSTDIGELALGQNLLVAFMPWNGYNFEDSILISERLVEED 848 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 FT+IHI+EF +ARDTKLGPEEIT DIPNV E L +DE GI+ +GAEVN GDILVGK Sbjct: 849 RFTTIHIQEFTCVARDTKLGPEEITSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGK 908 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G++GTV+DVRIF R GI K+ER++ Sbjct: 909 VTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVTPGITGTVIDVRIFTREGIKKDERTL 968 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 +E+ ++ + +D +DE + + ++ L ++L G+ A GP K T ++ +++ P Sbjct: 969 EIEKAELSKVEKDLNDELRVREDALFENLEKLLTGRVAAGGPNKLAKGTKITKSYLADLP 1028 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 R +W++ +QD+ + +E+ ++ + + + K+ +K+ G D+ PGV+++VKV+ Sbjct: 1029 RQKWFEIRLQDDAATKRLEASHEHFKELRETRDAKLKDSRQKLTQGGDLAPGVIKIVKVY 1088 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR IQ GDKMAGRHGNKG++S I+P EDMP+L+DGTPVDIVLNPLGVPSRMN+GQ+ Sbjct: 1089 LAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVL 1148 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE-KISDYDDDSVLRV 1196 ETHLGWA GLGKKI +I + D LR+ L+ + + +D ++ + Sbjct: 1149 ETHLGWAAKGLGKKIGEMI---EKGADAKELRNSLKPIYDLSKTQRFDLEALEDPEIVTL 1205 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A+ + GVP+S+PVFDGA EE I +L+MADL SGQ+ LYDG TG+ FDR VTVGY+YM Sbjct: 1206 AKNLRKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYM 1265 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1266 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1325 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +KSDDV GRTR+Y++IV G+ + G PESFNVLVKE+++L + I LEN Sbjct: 1326 VKSDDVAGRTRMYKNIVDGDHRMDAGMPESFNVLVKEIRSLAIDIGLEND 1375 >gi|215918919|ref|NP_819275.2| DNA-directed RNA polymerase subunit beta [Coxiella burnetii RSA 493] gi|206583804|gb|AAO89789.2| DNA-directed RNA polymerase beta chain [Coxiella burnetii RSA 493] Length = 1377 Score = 1645 bits (4259), Expect = 0.0, Method: Composition-based stats. Identities = 718/1370 (52%), Positives = 985/1370 (71%), Gaps = 10/1370 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNP-EIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + + + R R GK EI+ P L+E Q SY FL +IA ++R + GL AAFK Sbjct: 13 SATISYPEKRRARVNLGKREVEILKTPYLLETQIESYRKFLQKDIAAEKREDNGLHAAFK 72 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPK--FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 SVFPIT++SG A+LE+V Y FDV++C R LTYA PLK+ +RL+++D + G Sbjct: 73 SVFPITSYSGYAVLEYVGYSLGGESTLFDVEECKLRGLTYAAPLKVNMRLVIYDKEAPAG 132 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 K+IKDIKEQ +YMG++PLMT+ G+ VI G +R+VVSQLHRSPG+ F+HDKG+ SGKL Sbjct: 133 KKAIKDIKEQEVYMGEIPLMTETGSLVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKL 192 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 LY+ R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG D+E+IL FY + Sbjct: 193 LYSARVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPATVILRALGYDTEQILDMFYKTNHF 252 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + L L G + D G+ ++E+ +++++ ++ +++ + L + Sbjct: 253 HLNQETVTLDLIPQRL-RGELAVVEIKDKK-GKVIVEANRRISARHIRLIEKAEINKLEL 310 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G + + I++ ETGEI A + I + L+ + ++ + LY++ + Y+ Sbjct: 311 PDDYLYGKVIGKTIIDKETGEIIAHANEEITAELLKNLRATKTASLDTLYINEIECGPYV 370 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 +TL D ++ +AL++IYR+MRPG+ T AES+F LFF ++Y LS VGR+K N Sbjct: 371 SDTLRLDTTTNQLEALVEIYRIMRPGEPPTKEAAESLFENLFFSPERYSLSAVGRMKFNR 430 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R+ + + KEDI+ ++++LVD+R+GKG +DDID+LGNRR+RSVGEM +NQ+R+G Sbjct: 431 RVGRKELTGLDVLSKEDIVDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFRVG 490 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L+R+ER++K+R+S D++++MPQDL+NAKPV +A+ EFF SSQLSQ + N LS ITH Sbjct: 491 LVRVERAVKDRLSLADVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHK 550 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL FAR N YGF+ Sbjct: 551 RRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFL 610 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV D VT++ YLSA+EE + YIAQAN+++DE G ++L+ CR GE L Sbjct: 611 ETPYRKVVDRVVTDETEYLSAIEEGDYYIAQANTNVDEKGRLVDDLISCRYKGEFTLTTP 670 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +KI+++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP ++ E P VGTGME Sbjct: 671 DKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLVGTGMERT 730 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VA SG ++AKR+G+++ VDA RIV+R + D GVDIY L KF RSNQNTC+N Sbjct: 731 VAVDSGVTVIAKRSGVIDSVDASRIVVRVDRKETEDDDDIGVDIYNLTKFTRSNQNTCIN 790 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q P+V+VGD+V++ D++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V ED Sbjct: 791 QHPIVEVGDKVQKGDVLADGPSTDIGELALGQNLLVAFMPWNGYNFEDSILISERLVEED 850 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 FT+IHI+EF +ARDTKLGPEEIT DIPNV E L +DE GI+ +GAEVN GDILVGK Sbjct: 851 RFTTIHIQEFTCVARDTKLGPEEITSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGK 910 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G++GTV+DVRIF R GI K+ER++ Sbjct: 911 VTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVTPGITGTVIDVRIFTREGIKKDERTL 970 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 +E+ ++ + +D +DE + + ++ L ++L G+ A GP K T ++ +++ P Sbjct: 971 EIEKAELSKVEKDLNDELRVREDALFENLEKLLTGRVAAGGPNKLAKGTKITKSYLADLP 1030 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 R +W++ +QD+ + +E+ ++ + + + K+ +K+ G D+ PGV+++VKV+ Sbjct: 1031 RQKWFEIRLQDDAATKRLEASHEHFKELRETRDAKLKDSRQKLTQGGDLAPGVIKIVKVY 1090 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR IQ GDKMAGRHGNKG++S I+P EDMP+L+DGTPVDIVLNPLGVPSRMN+GQ+ Sbjct: 1091 LAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVL 1150 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE-KISDYDDDSVLRV 1196 ETHLGWA GLGKKI +I + D LR L+ + + +D ++ + Sbjct: 1151 ETHLGWAAKGLGKKIGEMI---EKGADAKELRKSLKPIYDLSKTQRFDLEALEDPEIVTL 1207 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A+ + GVP+S+PVFDGA EE I +L+MADL SGQ+ LYDG TG+ FDR VTVGY+YM Sbjct: 1208 AKNLRKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYM 1267 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1268 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1327 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +KSDDV GRTR+Y++IV G+ + G PESFNVLVKE+++L + I LEN Sbjct: 1328 VKSDDVAGRTRMYKNIVDGDHRMDAGMPESFNVLVKEIRSLAIDIGLEND 1377 >gi|224493307|sp|B6J270|RPOB_COXB2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|3660649|gb|AAC61666.1| RNA polymerase beta-subunit [Coxiella burnetii] Length = 1375 Score = 1645 bits (4259), Expect = 0.0, Method: Composition-based stats. Identities = 717/1370 (52%), Positives = 985/1370 (71%), Gaps = 10/1370 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNP-EIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + + + R R GK EI+ P L+E Q SY FL +IA ++R + GL AAFK Sbjct: 11 SATISYPEKRRARVNLGKREVEILKTPYLLETQIESYRKFLQKDIAAEKREDNGLHAAFK 70 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPK--FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 SVFPIT++SG A+LE+V Y FDV++C R LTYA PLK+ +RL+++D + G Sbjct: 71 SVFPITSYSGYAVLEYVGYSLGGESTLFDVEECKLRGLTYAAPLKVNMRLVIYDKEAPAG 130 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 K+IKDIKEQ +YMG++PLMT+ G+ VI G +R+VVSQLHRSPG+ F+HDKG+ SGKL Sbjct: 131 KKAIKDIKEQEVYMGEIPLMTETGSLVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKL 190 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 LY+ R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG D+E+IL FY + Sbjct: 191 LYSARVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPATVILRALGYDTEQILDMFYKTNHF 250 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + L L G + D G+ ++E+ +++++ ++ +++ + L + Sbjct: 251 HLNQETVTLDLIPQRL-RGELAVVEIKDKK-GKVIVEANRRISARHIRLIEKAEINKLEL 308 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G + + I++ ETGEI A + I + L+ + ++ + LY++ + Y+ Sbjct: 309 PDDYLYGKVIGKTIIDKETGEIIAHANEEITAELLKNLRATKTASLDTLYINEIECGPYV 368 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 +TL D ++ +AL++IYR+MRPG+ T AES+F LFF ++Y LS VGR+K N Sbjct: 369 SDTLRLDTTTNQLEALVEIYRIMRPGEPPTKEAAESLFENLFFSPERYSLSAVGRMKFNR 428 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R+ + + KEDI+ ++++LVD+R+GKG +DDID+LGNRR+RSVGEM +NQ+R+G Sbjct: 429 RVGRKELTGLDVLSKEDIVDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFRVG 488 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L+R+ER++K+R+S D++++MPQDL+NAKPV +A+ EFF SSQLSQ + N LS ITH Sbjct: 489 LVRVERAVKDRLSLADVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHK 548 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL FAR N YGF+ Sbjct: 549 RRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFL 608 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV D VT++ YLSA+EE + YIAQAN+++DE G ++L+ CR GE L Sbjct: 609 ETPYRKVVDRVVTDETEYLSAIEEGDYYIAQANTNVDEKGRLVDDLISCRYKGEFTLTTP 668 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +KI+++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP ++ E P VGTGME Sbjct: 669 DKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLVGTGMERT 728 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VA SG ++AKR+G+++ VDA RIV+R + D GVDIY L KF RSNQNTC+N Sbjct: 729 VAVDSGVTVIAKRSGVIDSVDASRIVVRVDRKETEDDDDIGVDIYNLTKFTRSNQNTCIN 788 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q P+V+VGD+V++ D++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V ED Sbjct: 789 QHPIVEVGDKVQKGDVLADGPSTDIGELALGQNLLVAFMPWNGYNFEDSILISERLVEED 848 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 FT+IHI+EF +ARDTKLGPEEIT DIPNV E L +DE GI+ +GAEVN GDILVGK Sbjct: 849 RFTTIHIQEFTCVARDTKLGPEEITSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGK 908 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G++GTV+DVRIF R G+ K+ER++ Sbjct: 909 VTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVTPGITGTVIDVRIFTREGVKKDERTL 968 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 +E+ ++ + +D +DE + + ++ L ++L G+ A GP K T ++ +++ P Sbjct: 969 EIEKAELSKVEKDLNDELRVREDALFENLEKLLTGRVAAGGPNKLAKGTKITKSYLADLP 1028 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 R +W++ +QD+ + +E+ ++ + + + K+ +K+ G D+ PGV+++VKV+ Sbjct: 1029 RQKWFEIRLQDDAATKRLEASHEHFKELRETRDAKLKDSRQKLTQGGDLAPGVIKIVKVY 1088 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR IQ GDKMAGRHGNKG++S I+P EDMP+L+DGTPVDIVLNPLGVPSRMN+GQ+ Sbjct: 1089 LAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVL 1148 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE-KISDYDDDSVLRV 1196 ETHLGWA GLGKKI +I + D LR L+ + + +D ++ + Sbjct: 1149 ETHLGWAAKGLGKKIGEMI---EKGADAKELRKSLKPIYDLSKTQRFDLEALEDPEIVML 1205 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A+ + GVP+S+PVFDGA EE I +L+MADL SGQ+ LYDG TG+ FDR VTVGY+YM Sbjct: 1206 AKNLRKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYM 1265 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1266 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1325 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +KSDDV GRTR+Y++IV G+ + G PESFNVLVKE+++L + I LEN Sbjct: 1326 VKSDDVAGRTRMYKNIVDGDHRMDAGMPESFNVLVKEIRSLAIDIGLEND 1375 >gi|307262218|ref|ZP_07543868.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868092|gb|EFM99918.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 1361 Score = 1645 bits (4259), Expect = 0.0, Method: Composition-based stats. Identities = 710/1369 (51%), Positives = 976/1369 (71%), Gaps = 28/1369 (2%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A ++ R+RK FGK P+++++P L+ +Q SY+ F+ + +GL+AAF+ Sbjct: 18 LAMAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSYEKFIQRDSD----GQQGLEAAFR 73 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI + +G+ L++VSYE P FDV +C R TYA PL++ LRL+ FD + G Sbjct: 74 SVFPIVSNNGSTELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG-- 131 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 132 TVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 191 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEILS F+ K+ + Sbjct: 192 NARIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILSMFFDKVNFEI 251 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + L L G + + G+ +E G+++T+ +++L++ +K + + Sbjct: 252 QDNKLLMTLVPERL-RGETAAFDIE--ANGKVYVERGRRITARHIRTLEKDEIKQIEVPV 308 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + + G A+D V+ TGE+ A I + L ++ + ++I +L+ + +++ YI Sbjct: 309 EYIVGKVAAKDYVDLSTGELVCPANMEISMEMLAKLSQAGYKEIEVLFTNDLDHGPYISE 368 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D DR AL++IYR+MRPG+ T AE++F+ +FF +D+YDLS VGR+K N L Sbjct: 369 TLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSL 428 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NL+ + +DI ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+ Sbjct: 429 NLEEGVGSGILSNDDITGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLV 488 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER+++ER+S D+D + PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR Sbjct: 489 RVERAVRERLSLGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRR 548 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ET Sbjct: 549 ISALGPGGLTRERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLET 608 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPRE 659 P+RKV +G+VT D+ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E Sbjct: 609 PFRKVVNGQVTEDIEYLSAIEEGNYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYKPE 668 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 I ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME + Sbjct: 669 DIHYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPI 728 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SG AIVAKR GIV++VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ Sbjct: 729 ALDSGVAIVAKRGGIVQRVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQI 788 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P V +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED F Sbjct: 789 PCVNLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRF 848 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 T+IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+T Sbjct: 849 TTIHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVT 908 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ + Sbjct: 909 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEI 968 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 E Q++ +D +E IL+ +++R+ +L S + + R Sbjct: 969 EEMQLKEAKKDLTEELEILEAGLFTRVRNLLIEGGV-------------SEAELDKVSRE 1015 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 +W + + DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A Sbjct: 1016 KWLEQTLDDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLA 1075 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 ++R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ET Sbjct: 1076 VRRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILET 1135 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVA 1197 HLG A G+G +I ++I K ++ LR +++K G GS + +S + D+ V+R+A Sbjct: 1136 HLGLAAKGIGDQINAMI---KQQQSVAKLREYIQKAYDLGHGSQSVDLSTFTDEEVMRLA 1192 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 E + G+P++TPVFDGA E I +L + L SGQ L+DG TGE F+RPVTVGY+YML Sbjct: 1193 ENLRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYML 1252 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+ Sbjct: 1253 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1312 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 KSDDV GRT++Y++IV G E G PESFNVL+KE++ALG+ ++L+ Sbjct: 1313 KSDDVNGRTKMYKNIVDGTHQMEPGMPESFNVLLKEIRALGIDMELDEE 1361 >gi|307246656|ref|ZP_07528726.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248781|ref|ZP_07530794.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251024|ref|ZP_07532949.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307255641|ref|ZP_07537445.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260092|ref|ZP_07541803.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852356|gb|EFM84591.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854708|gb|EFM86898.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856964|gb|EFM89095.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861318|gb|EFM93308.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865826|gb|EFM97703.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 1361 Score = 1644 bits (4258), Expect = 0.0, Method: Composition-based stats. Identities = 710/1369 (51%), Positives = 976/1369 (71%), Gaps = 28/1369 (2%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A ++ R+RK FGK P+++++P L+ +Q SY+ F+ + +GL+AAF+ Sbjct: 18 LAMAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSYEKFIQRDSD----GQQGLEAAFR 73 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPI + +G+ L++VSYE P FDV +C R TYA PL++ LRL+ FD + G Sbjct: 74 SVFPIVSNNGSTELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG-- 131 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 132 TVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 191 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEILS F+ K+ + Sbjct: 192 NARIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILSMFFDKVNFEI 251 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + L L G + + G+ +E G+++T+ +++L++ +K + + Sbjct: 252 QDNKLLMTLVPERL-RGETAAFDIE--ANGKVYVERGRRITARHIRTLEKDEIKQIEVPV 308 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + + G A+D V+ TGE+ A I + L ++ + ++I +L+ + +++ YI Sbjct: 309 EYIVGKVAAKDYVDLSTGELVCPANMEISMEMLAKLSQAGYKEIEVLFTNDLDHGPYISE 368 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D DR AL++IYR+MRPG+ T AE++F+ +FF +D+YDLS VGR+K N L Sbjct: 369 TLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSL 428 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NL+ + +DI ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+ Sbjct: 429 NLEEGVGSGILSNDDITGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLV 488 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER+++ER+S D+D + PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR Sbjct: 489 RVERAVRERLSLGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRR 548 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ET Sbjct: 549 ISALGPGGLTRERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLET 608 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPRE 659 P+RKV +G+VT D+ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E Sbjct: 609 PFRKVVNGQVTEDIEYLSAIEEGNYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYKPE 668 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 I ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME + Sbjct: 669 DIHYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPI 728 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SG AIVAKR GIV++VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ Sbjct: 729 ALDSGVAIVAKRGGIVQRVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQI 788 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P V +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED F Sbjct: 789 PCVNLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRF 848 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 T+IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+T Sbjct: 849 TTIHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVT 908 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ + Sbjct: 909 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEI 968 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 E Q++ +D +E IL+ +++R+ +L S + + R Sbjct: 969 EEMQLKEAKKDLTEELEILEAGLFTRVRNLLIEGGV-------------SEAELDKVARE 1015 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 +W + + DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A Sbjct: 1016 KWLEQTLDDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLA 1075 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 ++R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ET Sbjct: 1076 VRRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILET 1135 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVA 1197 HLG A G+G +I ++I K ++ LR +++K G GS + +S + D+ V+R+A Sbjct: 1136 HLGLAAKGIGDQINAMI---KQQQSVAKLREYIQKAYDLGHGSQSVDLSTFTDEEVMRLA 1192 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 E + G+P++TPVFDGA E I +L + L SGQ L+DG TGE F+RPVTVGY+YML Sbjct: 1193 ENLRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYML 1252 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+ Sbjct: 1253 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1312 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 KSDDV GRT++Y++IV G E G PESFNVL+KE++ALG+ ++L+ Sbjct: 1313 KSDDVNGRTKMYKNIVDGTHQMEPGMPESFNVLLKEIRALGIDMELDEE 1361 >gi|120596982|ref|YP_961556.1| DNA-directed RNA polymerase subunit beta [Shewanella sp. W3-18-1] gi|146294848|ref|YP_001185272.1| DNA-directed RNA polymerase subunit beta [Shewanella putrefaciens CN-32] gi|158512970|sp|A1REA7|RPOB_SHESW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166229306|sp|A4YBZ0|RPOB_SHEPC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|120557075|gb|ABM23002.1| DNA-directed RNA polymerase, beta subunit [Shewanella sp. W3-18-1] gi|145566538|gb|ABP77473.1| DNA-directed RNA polymerase, beta subunit [Shewanella putrefaciens CN-32] gi|319424573|gb|ADV52647.1| DNA-directed RNA polymerase, beta subunit [Shewanella putrefaciens 200] Length = 1343 Score = 1644 bits (4258), Expect = 0.0, Method: Composition-based stats. Identities = 700/1364 (51%), Positives = 961/1364 (70%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D GL+AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKF----TDQDPTGERGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL ++EIL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + D + G ++E+G+++T+ ++ L++ L + + Sbjct: 235 DTLVMALVPERL-RGETASYDIKDAE-GSVLVEAGRRITARHIRQLEKTNTTELEVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y A+D ++ +TGE+ + A I + L ++ + I+DI LY++ +++ AYI +TL Sbjct: 293 IVGKYAAQDYIDPDTGEVLVSANSEISLEDLAKLSLAGIKDISTLYINELDHGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL++ Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 PDDEGSGVLSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T++V YLSA+EE IAQAN +D +G EE + CR GE + I Sbjct: 593 RKVIDGVITDEVEYLSAIEEGRYVIAQANIEVDANGRMVEEQIACRHKGESTFMRASDIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G ++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVVAKRGGYIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 AVGEPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ + SR +L G + I+ PR Sbjct: 953 HIAQARKDLSEEFKILEEGVLSRARNLLLGAG-------------FTETQIAAMPRKDVL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q+E K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 VQVIDDEAKQTELEQLAEQHEELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQ+ E H+G Sbjct: 1060 TIQPGDKMAGRHGNKGVISKICPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHMG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + ++ + ++ I + DD V+R+A+ K Sbjct: 1120 AAAKGIGNKITAMLEEQRELAEVRGYIKQVYELGDEVQQRVDIDSFTDDEVMRLAQNLKG 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E+ I ML +A L SGQ LYDG TG F+R VTVGY+YMLKLNH+ Sbjct: 1180 GIPIATPAFDGAKEKEIKQMLELAGLPTSGQLKLYDGRTGNEFERQVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1300 NGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQE 1343 >gi|289663455|ref|ZP_06485036.1| DNA-directed RNA polymerase subunit beta [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667613|ref|ZP_06488688.1| DNA-directed RNA polymerase subunit beta [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 1383 Score = 1644 bits (4258), Expect = 0.0, Method: Composition-based stats. Identities = 706/1389 (50%), Positives = 969/1389 (69%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ P++R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT +GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG ++EE+L+ F+ + D Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLAEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ GV L + D L Sbjct: 241 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+G TGE+ A D I E L + + + L+V+ ++ Y+ NTL Sbjct: 299 VGRILSHDVVDGSTGELLANANDEISEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A +IK+L ++RNG+G +DDID+LGN Sbjct: 419 DVLGESVLYDKKYFAERNDEESKRLVAEHTDTSDILEVIKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A R G++EQ+DA RIV++ E + +GVD Sbjct: 719 PTLRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A G Sbjct: 959 DVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGG-A 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK ++ + +S W+Q ++DE +E + Q + + E RF +K KI Sbjct: 1018 NLKKGDSVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G VDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGESVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI+ ++ +A +S LR FL+ + + Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRML---EAQTAVSELRKFLDDIYNHDN 1194 Query: 1181 HTE----KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + D+ +L + + GVP++TPVFDGA E I ML +A+L +SGQ+ L Sbjct: 1195 AINAQRVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELAELPQSGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLEN 1365 L ++++LE Sbjct: 1375 LAINMELEE 1383 >gi|33594737|ref|NP_882380.1| DNA-directed RNA polymerase subunit beta [Bordetella parapertussis 12822] gi|33564813|emb|CAE39755.1| DNA-directed RNA polymerase beta chain [Bordetella parapertussis] Length = 1378 Score = 1644 bits (4257), Expect = 0.0, Method: Composition-based stats. Identities = 697/1375 (50%), Positives = 956/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++ ++P L+ Q SY FL + A +R NEGLQAAF S+ Sbjct: 9 MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTATSDRVNEGLQAAFSSI 68 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P FDV +C R LTYA PL+ +RL++ D +I Sbjct: 69 FPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDR--EVSKPTI 126 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 127 KEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 186 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ R+DRRRK+PVT L A+GM E IL+ F+ + + Sbjct: 187 RVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFELKS 246 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + A G + D G+ ++E K++ + L+ L G++ + + D Sbjct: 247 EGGMMEFVAE-RWKGEMARFDIAD-RDGKVIVEKDKRINAKHLRDLAAGGIQRVSVPEDF 304 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D I E L + + +RDI LY + ++ YI TL Sbjct: 305 LYGRVLAKNIVDPDTGEVVAHANDEITESVLNAMRAANVRDIQTLYTNDLDRGPYISQTL 364 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ E++F LF+ + YDLS VGR+K+N RL Sbjct: 365 RADETADQMAARVAIYRMMRPGEPPAEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGR 424 Query: 423 -DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + EDI+ IK+LV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R Sbjct: 425 GDDSTGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVR 484 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 485 VERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRV 544 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR+N YGF+ETP Sbjct: 545 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETP 604 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DGKV++ + YLSA+EE + IAQAN++LD++G F ++LV CR AGE +L + Sbjct: 605 YRKIIDGKVSDQIDYLSAIEESHYVIAQANAALDDEGRFVDDLVACREAGETMLTAPGNV 664 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 665 HYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGVERTVAV 724 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 725 DSGTTVQALRGGVVDHVDADRVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPI 784 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V GD+V + D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TS Sbjct: 785 VARGDKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTS 844 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE V+ARDTKLGPEEITRDI N++E L +D+ GI+ +GAEV+ D+LVGK+TPK Sbjct: 845 IHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGIVYIGAEVSADDVLVGKVTPK 904 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV SG++GTV+DV++F R GI +++R+ S+ Sbjct: 905 GETQLTPEEKLLRAIFGEKASDVKDTSLRVSSGMTGTVIDVQVFTREGIVRDKRAQSIID 964 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +++ +D +D+ I++ + + R+ ++L G+ GP+ K L+ +++ R QW Sbjct: 965 DELRRYRQDLNDQLRIVENDQFDRIEKMLVGKAVNGGPRKLAKGATLTKAYLADLDRWQW 1024 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ +E K E + + F+ K +K+ GD++PPGVL+++KV++A+K Sbjct: 1025 FDIRLADEQHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVK 1084 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VSRI P EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1085 RRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHL 1144 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G +I ++ D + +R +LEKV T + I D+ VL +A K Sbjct: 1145 GWAAKGVGYRIADMLRDERT-AQAKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELANNLK 1203 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE I ML +A D Q+ LYDG TGE F+RPVT+ Sbjct: 1204 KGVPFATPVFDGATEEEIGKMLELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTI 1263 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y L Sbjct: 1264 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTL 1323 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDD+ GRT+VYE+IV G+ + G PESFNVLVKE+++L L +DLE + Sbjct: 1324 QEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN 1378 >gi|212213257|ref|YP_002304193.1| DNA-directed RNA polymerase subunit beta [Coxiella burnetii CbuG_Q212] gi|212011667|gb|ACJ19048.1| DNA-directed RNA polymerase beta chain [Coxiella burnetii CbuG_Q212] Length = 1377 Score = 1644 bits (4257), Expect = 0.0, Method: Composition-based stats. Identities = 717/1370 (52%), Positives = 985/1370 (71%), Gaps = 10/1370 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNP-EIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + + + R R GK EI+ P L+E Q SY FL +IA ++R + GL AAFK Sbjct: 13 SATISYPEKRRARVNLGKREVEILKTPYLLETQIESYRKFLQKDIAAEKREDNGLHAAFK 72 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPK--FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 SVFPIT++SG A+LE+V Y FDV++C R LTYA PLK+ +RL+++D + G Sbjct: 73 SVFPITSYSGYAVLEYVGYSLGGESTLFDVEECKLRGLTYAAPLKVNMRLVIYDKEAPAG 132 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 K+IKDIKEQ +YMG++PLMT+ G+ VI G +R+VVSQLHRSPG+ F+HDKG+ SGKL Sbjct: 133 KKAIKDIKEQEVYMGEIPLMTETGSLVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKL 192 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 LY+ R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG D+E+IL FY + Sbjct: 193 LYSARVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPATVILRALGYDTEQILDMFYKTNHF 252 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + L L G + D G+ ++E+ +++++ ++ +++ + L + Sbjct: 253 HLNQETVTLDLIPQRL-RGELAVVEIKDKK-GKVIVEANRRISARHIRLIEKAEINKLEL 310 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G + + I++ ETGEI A + I + L+ + ++ + LY++ + Y+ Sbjct: 311 PDDYLYGKVIGKTIIDKETGEIIAHANEEITAELLKNLRATKTASLDTLYINEIECGPYV 370 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 +TL D ++ +AL++IYR+MRPG+ T AES+F LFF ++Y LS VGR+K N Sbjct: 371 SDTLRLDTTTNQLEALVEIYRIMRPGEPPTKEAAESLFENLFFSPERYSLSAVGRMKFNR 430 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R+ + + KEDI+ ++++LVD+R+GKG +DDID+LGNRR+RSVGEM +NQ+R+G Sbjct: 431 RVGRKELTGLDVLSKEDIVDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFRVG 490 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L+R+ER++K+R+S D++++MPQDL+NAKPV +A+ EFF SSQLSQ + N LS ITH Sbjct: 491 LVRVERAVKDRLSLADVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHK 550 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL FAR N YGF+ Sbjct: 551 RRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFL 610 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV D VT++ YLSA+EE + YIAQAN+++DE G ++L+ CR GE L Sbjct: 611 ETPYRKVVDRVVTDETEYLSAIEEGDYYIAQANTNVDEKGRLVDDLISCRYKGEFTLTTP 670 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +KI+++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP ++ E P VGTGME Sbjct: 671 DKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLVGTGMERT 730 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VA SG ++AKR+G+++ VDA RIV+R + D GVDIY L KF RSNQNTC+N Sbjct: 731 VAVDSGVTVIAKRSGVIDSVDASRIVVRVDRKETEDDDDIGVDIYNLTKFTRSNQNTCIN 790 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q P+V+VGD+V++ D++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V ED Sbjct: 791 QHPIVEVGDKVQKGDVLADGPSTDIGELALGQNLLVAFMPWNGYNFEDSILISERLVEED 850 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 FT+IHI+EF +ARDTKLGPEEIT DIPNV E L +DE GI+ +GAEVN GDILVGK Sbjct: 851 RFTTIHIQEFTCVARDTKLGPEEITSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGK 910 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G++GTV+DVRIF R G+ K+ER++ Sbjct: 911 VTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVTPGITGTVIDVRIFTREGVKKDERTL 970 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 +E+ ++ + +D +DE + + ++ L ++L G+ A GP K T ++ +++ P Sbjct: 971 EIEKAELSKVEKDLNDELRVREDALFENLEKLLTGRVAAGGPNKLAKGTKITKSYLADLP 1030 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 R +W++ +QD+ + +E+ ++ + + + K+ +K+ G D+ PGV+++VKV+ Sbjct: 1031 RQKWFEIRLQDDAATKRLEASHEHFKELRETRDAKLKDSRQKLTQGGDLAPGVIKIVKVY 1090 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR IQ GDKMAGRHGNKG++S I+P EDMP+L+DGTPVDIVLNPLGVPSRMN+GQ+ Sbjct: 1091 LAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVL 1150 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE-KISDYDDDSVLRV 1196 ETHLGWA GLGKKI +I + D LR L+ + + +D ++ + Sbjct: 1151 ETHLGWAAKGLGKKIGEMI---EKGADAKELRKSLKPIYDLSKTQRFDLEALEDPEIVML 1207 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A+ + GVP+S+PVFDGA EE I +L+MADL SGQ+ LYDG TG+ FDR VTVGY+YM Sbjct: 1208 AKNLRKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYM 1267 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1268 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1327 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +KSDDV GRTR+Y++IV G+ + G PESFNVLVKE+++L + I LEN Sbjct: 1328 VKSDDVAGRTRMYKNIVDGDHRMDAGMPESFNVLVKEIRSLAIDIGLEND 1377 >gi|187476527|ref|YP_784551.1| DNA-directed RNA polymerase subunit beta [Bordetella avium 197N] gi|115421113|emb|CAJ47597.1| DNA-directed RNA polymerase beta chain [Bordetella avium 197N] Length = 1378 Score = 1644 bits (4257), Expect = 0.0, Method: Composition-based stats. Identities = 691/1375 (50%), Positives = 960/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++ ++P L+ Q SY FL A +R NEGLQAAF S+ Sbjct: 9 MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQAETATADRVNEGLQAAFTSI 68 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P FDV +C R LTYA PL+ +RL++ D +I Sbjct: 69 FPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDR--EVSKPTI 126 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 127 KEVKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 186 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ R+DRRRK+PVT L A+GM E IL+ F+ + + Sbjct: 187 RVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFELKS 246 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + G + D G+ ++E K++ + L+ L G++ + + D Sbjct: 247 EGAMMEFVPE-RWKGEMARFDITD-RAGKVIVEKDKRINAKHLRDLANGGIQRISVPEDF 304 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+ +TGE+ A D I E L+ + +++ D+ LY + ++ YI TL Sbjct: 305 LYGRVLAKNVVDPDTGEVIALANDEITESVLDAMRAAKVLDLQTLYTNDLDRGPYISQTL 364 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL Sbjct: 365 RTDETVDQTAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGR 424 Query: 423 -DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + + EDI+ IK+LV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R Sbjct: 425 GDDANGPMTLTDEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVR 484 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 485 VERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRV 544 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR+N YGF+ETP Sbjct: 545 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETP 604 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DG+V++ + YLSA+EE + IAQAN++LD +G F ++LV CR AGE +L + Sbjct: 605 YRKIIDGRVSDQIDYLSAIEESHYVIAQANAALDAEGRFVDDLVACREAGETMLTSPVNV 664 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 665 HYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAV 724 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 725 DSGTTVQALRGGLVDHVDAERVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPI 784 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD V + D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TS Sbjct: 785 VKRGDRVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTS 844 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 +HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV+ D+LVGK+TPK Sbjct: 845 VHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDESGIVYIGAEVSADDVLVGKVTPK 904 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV++F R GI +++R+ S+ Sbjct: 905 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIID 964 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +++ +D +D+ I++ + + R+ ++L G+ GP+ K ++ +++ R QW Sbjct: 965 DELRRYRQDLNDQLRIVENDQFDRIEKLLVGKTVNGGPRKLAKGATVTKAYLADLDRWQW 1024 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE +E K E + + F+ K +K+ GD++PPGVL+++KV++A+K Sbjct: 1025 FDIRLSDEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVK 1084 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VSRI P EDMP + DGT DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1085 RRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTTADIVLNPLGVPSRMNVGQVLEVHL 1144 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G++I ++ D + + +R++LEKV T +IS+ D+ V+ +A K Sbjct: 1145 GWAAKGVGQRIADMLQDERT-AQVKNIRAYLEKVYNTTGTGARISELSDEEVIELANNLK 1203 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADL----------DESGQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA E+ I ML +A Q+ L+DG TGE F+RPVT+ Sbjct: 1204 RGVPFATPVFDGATEDEITMMLELAYPDDVAKRMQLTPSRAQAWLFDGRTGEKFERPVTI 1263 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y L Sbjct: 1264 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTL 1323 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDD+ GRT+VYE+IV G+ + G PESFNVLVKE+++L L +DLE + Sbjct: 1324 QEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN 1378 >gi|158518634|sp|Q7W2G9|RPOB_BORPA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1370 Score = 1644 bits (4257), Expect = 0.0, Method: Composition-based stats. Identities = 697/1375 (50%), Positives = 956/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++ ++P L+ Q SY FL + A +R NEGLQAAF S+ Sbjct: 1 MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTATSDRVNEGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P FDV +C R LTYA PL+ +RL++ D +I Sbjct: 61 FPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDR--EVSKPTI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ R+DRRRK+PVT L A+GM E IL+ F+ + + Sbjct: 179 RVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFELKS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + A G + D G+ ++E K++ + L+ L G++ + + D Sbjct: 239 EGGMMEFVAE-RWKGEMARFDIAD-RDGKVIVEKDKRINAKHLRDLAAGGIQRVSVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D I E L + + +RDI LY + ++ YI TL Sbjct: 297 LYGRVLAKNIVDPDTGEVVAHANDEITESVLNAMRAANVRDIQTLYTNDLDRGPYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ E++F LF+ + YDLS VGR+K+N RL Sbjct: 357 RADETADQMAARVAIYRMMRPGEPPAEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGR 416 Query: 423 -DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + EDI+ IK+LV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R Sbjct: 417 GDDSTGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 477 VERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRV 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR+N YGF+ETP Sbjct: 537 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETP 596 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DGKV++ + YLSA+EE + IAQAN++LD++G F ++LV CR AGE +L + Sbjct: 597 YRKIIDGKVSDQIDYLSAIEESHYVIAQANAALDDEGRFVDDLVACREAGETMLTAPGNV 656 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 657 HYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGVERTVAV 716 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 717 DSGTTVQALRGGVVDHVDADRVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPI 776 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V GD+V + D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TS Sbjct: 777 VARGDKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTS 836 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE V+ARDTKLGPEEITRDI N++E L +D+ GI+ +GAEV+ D+LVGK+TPK Sbjct: 837 IHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGIVYIGAEVSADDVLVGKVTPK 896 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV SG++GTV+DV++F R GI +++R+ S+ Sbjct: 897 GETQLTPEEKLLRAIFGEKASDVKDTSLRVSSGMTGTVIDVQVFTREGIVRDKRAQSIID 956 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +++ +D +D+ I++ + + R+ ++L G+ GP+ K L+ +++ R QW Sbjct: 957 DELRRYRQDLNDQLRIVENDQFDRIEKMLVGKAVNGGPRKLAKGATLTKAYLADLDRWQW 1016 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ +E K E + + F+ K +K+ GD++PPGVL+++KV++A+K Sbjct: 1017 FDIRLADEQHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVK 1076 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VSRI P EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1077 RRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHL 1136 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G +I ++ D + +R +LEKV T + I D+ VL +A K Sbjct: 1137 GWAAKGVGYRIADMLRDERT-AQAKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELANNLK 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE I ML +A D Q+ LYDG TGE F+RPVT+ Sbjct: 1196 KGVPFATPVFDGATEEEIGKMLELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTI 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y L Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDD+ GRT+VYE+IV G+ + G PESFNVLVKE+++L L +DLE + Sbjct: 1316 QEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN 1370 >gi|158518562|sp|Q2L2M3|RPOB_BORA1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1370 Score = 1644 bits (4257), Expect = 0.0, Method: Composition-based stats. Identities = 691/1375 (50%), Positives = 960/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++ ++P L+ Q SY FL A +R NEGLQAAF S+ Sbjct: 1 MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQAETATADRVNEGLQAAFTSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P FDV +C R LTYA PL+ +RL++ D +I Sbjct: 61 FPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDR--EVSKPTI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ R+DRRRK+PVT L A+GM E IL+ F+ + + Sbjct: 179 RVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFELKS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + G + D G+ ++E K++ + L+ L G++ + + D Sbjct: 239 EGAMMEFVPE-RWKGEMARFDITD-RAGKVIVEKDKRINAKHLRDLANGGIQRISVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+ +TGE+ A D I E L+ + +++ D+ LY + ++ YI TL Sbjct: 297 LYGRVLAKNVVDPDTGEVIALANDEITESVLDAMRAAKVLDLQTLYTNDLDRGPYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL Sbjct: 357 RTDETVDQTAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGR 416 Query: 423 -DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + + EDI+ IK+LV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R Sbjct: 417 GDDANGPMTLTDEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 477 VERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRV 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR+N YGF+ETP Sbjct: 537 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETP 596 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DG+V++ + YLSA+EE + IAQAN++LD +G F ++LV CR AGE +L + Sbjct: 597 YRKIIDGRVSDQIDYLSAIEESHYVIAQANAALDAEGRFVDDLVACREAGETMLTSPVNV 656 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 657 HYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAV 716 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 717 DSGTTVQALRGGLVDHVDAERVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPI 776 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD V + D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TS Sbjct: 777 VKRGDRVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTS 836 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 +HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV+ D+LVGK+TPK Sbjct: 837 VHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDESGIVYIGAEVSADDVLVGKVTPK 896 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV++F R GI +++R+ S+ Sbjct: 897 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIID 956 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +++ +D +D+ I++ + + R+ ++L G+ GP+ K ++ +++ R QW Sbjct: 957 DELRRYRQDLNDQLRIVENDQFDRIEKLLVGKTVNGGPRKLAKGATVTKAYLADLDRWQW 1016 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE +E K E + + F+ K +K+ GD++PPGVL+++KV++A+K Sbjct: 1017 FDIRLSDEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVK 1076 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VSRI P EDMP + DGT DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1077 RRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTTADIVLNPLGVPSRMNVGQVLEVHL 1136 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G++I ++ D + + +R++LEKV T +IS+ D+ V+ +A K Sbjct: 1137 GWAAKGVGQRIADMLQDERT-AQVKNIRAYLEKVYNTTGTGARISELSDEEVIELANNLK 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADL----------DESGQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA E+ I ML +A Q+ L+DG TGE F+RPVT+ Sbjct: 1196 RGVPFATPVFDGATEDEITMMLELAYPDDVAKRMQLTPSRAQAWLFDGRTGEKFERPVTI 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y L Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDD+ GRT+VYE+IV G+ + G PESFNVLVKE+++L L +DLE + Sbjct: 1316 QEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN 1370 >gi|197117316|ref|YP_002137743.1| DNA-directed RNA polymerase subunit beta [Geobacter bemidjiensis Bem] gi|226699409|sp|B5EFP3|RPOB_GEOBB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|197086676|gb|ACH37947.1| DNA-directed RNA polymerase, beta subunit [Geobacter bemidjiensis Bem] Length = 1371 Score = 1644 bits (4256), Expect = 0.0, Method: Composition-based stats. Identities = 718/1364 (52%), Positives = 989/1364 (72%), Gaps = 10/1364 (0%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK F K +IIDIP+LI++QK SY FL ++ D R N GL+A F+SVFPI FS A Sbjct: 11 LRKNFAKIHKIIDIPNLIDIQKNSYKRFLQLDTPVDARKNSGLEAVFRSVFPIRDFSDTA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE+VSY PK+DV++C R +T+A P+K+ +RL+V+DV + G +SI+DIKEQ +Y Sbjct: 71 SLEYVSYSLGAPKYDVEECHQRGMTFAAPMKVKVRLVVWDVAKDPGTRSIRDIKEQEVYF 130 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++PLMT +GTF+I G +R++VSQLHRSPG+ +DHDKG+ SGK+LY+ R+IP +G W+ Sbjct: 131 GEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSARVIPYRGSWL 190 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D EFD KDI++VRIDRRRK+P T L ALG ++ +++ FY + L+ A Sbjct: 191 DFEFDHKDILYVRIDRRRKMPATVLLKALGYSNDALINYFYKSEEVKLGDNGAMTKLADA 250 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 +L+ K ++ +VD TGE ++++ +K T L+ + E G+K + I+ + + + DI Sbjct: 251 ELLSNQKATADIVDPATGEVILKANRKFTKAALRKMAEHGIKEIPISEEEVVAKVASHDI 310 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 + TGEI +E + + + LEEI I +L++D+++ + R+T++ DK + Sbjct: 311 YDPATGEIIVECNEELTQAKLEEIIQKGITTFQVLFIDNLHVTSSFRDTILIDKIGSTDE 370 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 AL++IYR +RPGD T A +F LFF++++YDLS VGR+K+N +L +D P D + Sbjct: 371 ALIEIYRRLRPGDPPTLKSALVLFENLFFNAERYDLSAVGRLKLNYKLGVDVPLDCMTLT 430 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 +EDI+ +++ L++L+NGKG IDDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER+S Sbjct: 431 REDILEVVRYLIELKNGKGNIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSL 490 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 +++++MP DLIN+KPV + V EFF SSQLSQ + N LS +TH RRLSALG GG+ R Sbjct: 491 QEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRE 550 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+++AR+N +GF+ETPYR V +GKVT+ Sbjct: 551 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRVVSEGKVTD 610 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 +V + SA+EEE IAQAN+ +D+DG F + + R +GE +LV R++++ +D +P Q+V Sbjct: 611 EVRFFSALEEEGHAIAQANAEIDKDGRFAADYISARKSGEFVLVGRDELELMDVAPMQLV 670 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S+AASLIPFLENDD+NR LMG NMQRQAVPLL+A++P VGTGME VVA+ SG + VA+ Sbjct: 671 SVAASLIPFLENDDANRALMGSNMQRQAVPLLRADSPLVGTGMERVVARDSGVSSVARHN 730 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G+VE VDA RIV++ E D + +GVDIY L+KF RSNQNTC+NQRP+VKVGD V+ D Sbjct: 731 GVVESVDASRIVVKIDEDQYDATGTGVDIYNLIKFARSNQNTCINQRPVVKVGDHVKAGD 790 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 IIADGPSTD+G+LALG+N+L+AFMPW GYN+EDS+LISER+V +D +TSIHIEEFE +AR Sbjct: 791 IIADGPSTDMGELALGQNVLIAFMPWGGYNYEDSILISERLVKDDRYTSIHIEEFEAVAR 850 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLG EEIT DIPN+ EE LK++DE GII +GAEV PGDILVGKITPKGE+ ++PEEKL Sbjct: 851 DTKLGKEEITSDIPNLGEETLKDLDESGIIRIGAEVRPGDILVGKITPKGETQLSPEEKL 910 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFGEKA DVRDTSLRVP GV GTV+ +IF+R G DK+ R+ +E+ + L +D+ Sbjct: 911 LRAIFGEKAGDVRDTSLRVPPGVEGTVIGAKIFSRKGADKDARTEIIEKAEEMRLRKDEQ 970 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKG------FKKSTVLSSDLISEYPRSQWWQFAV 1026 DE I+ + +L ++L G+ A +G K ++ +++ + +W + ++ Sbjct: 971 DEIRIIRDSAIGKLKKLLVGKAAAVKIEGSDGKVLIPKGAAITEEMLKSFSMDRWDEISI 1030 Query: 1027 QDEK-VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 D+ + V I++ F +K++K++ GDD+PPGV+++VKV++A+KR +Q Sbjct: 1031 ADDDTIDEKVAQTLSTLNQQIDIIKYVFDDKVQKLRRGDDLPPGVIKMVKVYIAIKRKLQ 1090 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG+VSRILP EDMP+++DG PV+IVLNPLGVPSRMNVGQI E HLGW Sbjct: 1091 VGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQILEMHLGWGA 1150 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 GLG KI+ + + +I + FL+ + + + +L +A + K G+P Sbjct: 1151 KGLGWKIEEFLEKNAPHDEI---KRFLKGAYDNPEMDRFLDTLEGEELLNLARRLKRGIP 1207 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 +S+PVF+GA EE+I SML A +GQ LYDG +G+ F VTVG +Y LKL+H+V D Sbjct: 1208 MSSPVFEGASEESIQSMLTHAGFSTTGQVTLYDGKSGDKFMHQVTVGIMYFLKLHHLVDD 1267 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDDV GR Sbjct: 1268 KIHARSIGPYSLVTQQPLGGKARFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVAGR 1327 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 TR+YE+IV G T E G PESFNVL+KE+Q+LGL ++L Sbjct: 1328 TRMYEAIVKGKHTLEPGLPESFNVLIKELQSLGLDVELLEGDED 1371 >gi|167817763|ref|ZP_02449443.1| DNA-directed RNA polymerase subunit beta [Burkholderia pseudomallei 91] Length = 1363 Score = 1644 bits (4256), Expect = 0.0, Method: Composition-based stats. Identities = 694/1375 (50%), Positives = 961/1375 (69%), Gaps = 23/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q S+ FL ++ +R +EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRSIVHQVPFLLATQLESFSTFLQADVPTAQRKSEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 120 KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ Sbjct: 180 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMD 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G+ +++ K++ + ++ L+ K++ + D Sbjct: 240 EGAQMEFVPERL-RGEVARFDITD-REGKVIVQKDKRINAKHIRDLEAAKTKYISVPEDY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+++V+G+TGE+ A D I E LE++ ++I++I LY + ++ YI +TL Sbjct: 298 LLGRVLAKNVVDGDTGEVIANANDEITEGVLEKLREAKIKEIQTLYTNDLDQGPYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ Sbjct: 358 RVDETVDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 DEITGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN+++ +DG+ +ELV R AGE ++V ++I Sbjct: 598 RKVVDSKVTDQIDYLSAIEEGRYMIAQANAAIGDDGALVDELVSSREAGETMMVTPDRIQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 658 YMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 718 SGTTVQALRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TSI Sbjct: 778 KMGDKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 958 ELKRYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1018 DIRLADDEAAVQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP++ D+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSKIVPVEDMPYMA-----DVVLNPLGVPSRMNVGQVLEVHLG 1132 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA GLG +I ++ I LR FL K+ E + + DD +L +A+ + Sbjct: 1133 WAAKGLGWRIGEML---ARQTKIEELRVFLTKIYNESGRAEDLESFSDDEILELAKNLRE 1189 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDES-----------GQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA EE ++ ML +A + Q LYDG TGEPF+R VTV Sbjct: 1190 GVPFATPVFDGATEEEMSKMLDLA-FPDDIAEQLDMNPSKNQVRLYDGRTGEPFERRVTV 1248 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1249 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1308 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1309 QEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1363 >gi|319944812|ref|ZP_08019075.1| DNA-directed RNA polymerase subunit beta [Lautropia mirabilis ATCC 51599] gi|319741926|gb|EFV94350.1| DNA-directed RNA polymerase subunit beta [Lautropia mirabilis ATCC 51599] Length = 1371 Score = 1644 bits (4256), Expect = 0.0, Method: Composition-based stats. Identities = 700/1378 (50%), Positives = 963/1378 (69%), Gaps = 21/1378 (1%) Query: 3 KGVVFNGLGRVRKFFG--KNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 F R+RK FG + + ++P L+ Q SY FL + D+R + GLQAA K Sbjct: 1 MTYSFTEKKRIRKSFGHRRARAVQEVPYLLATQLESYAEFLQEGVPADQRKDVGLQAALK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 S+FPI++ + A LEFV Y P FD+ +C R L + PL+ +RL++ D Sbjct: 61 SIFPISSHNDMARLEFVGYTLGQPAFDMKECQQRGLNFCAPLRARVRLVIMDR--EASKP 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL+ Sbjct: 119 TVKEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD+KDI++ RIDRRRK+PVT L A+GM E+IL+ F+ ++ Sbjct: 179 SARIIPYRGSWLDFEFDAKDILYFRIDRRRKMPVTILLKAIGMTPEQILAHFFVFDTFTL 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + L L G + D G ++ K++ + ++ +++ G+K + + Sbjct: 239 ESEGAKMELVPERL-KGETARFDITD-REGNVIVAKDKRINAKHIRDMEKAGLKLISVPD 296 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G VA DIV+ ETGEI + A D + E SL + + I + LY + ++ +I Sbjct: 297 EFLLGRAVATDIVDPETGEIVMRANDELTEDSLGRLRAANIHEFRTLYTNDLDAGPFISQ 356 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D + D+ A + IYR+MRPG+ T E++FN LF++ D YDLS VGR+K N R+ Sbjct: 357 TLRLDDSADQISARIAIYRMMRPGEPPTEDAVEALFNRLFYNEDTYDLSRVGRMKFNSRV 416 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 + P + +DI+A+IK+LVDLRNGKG IDDID+LGNRRVR VGE+ +NQ+R GL+ Sbjct: 417 GREEPTGPMTLEDDDIVAVIKLLVDLRNGKGEIDDIDHLGNRRVRCVGELAENQFRAGLV 476 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER+++ER+ + ++++P DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR Sbjct: 477 RVERAVRERLGQAETENLLPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRR 536 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N +GF+ET Sbjct: 537 VSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEFGFLET 596 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV + K+T+ + +LSA+EE IAQAN+ LDE+G T ELV R GE LV ++ Sbjct: 597 PYRKVENQKLTDQIDFLSAIEEGRYVIAQANAELDEEGRLTGELVSVRINGETQLVSADR 656 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +++ID +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ + P VGTG+E A Sbjct: 657 VEYIDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPQKPLVGTGIERTCA 716 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG + A R G V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 717 VDSGTVVTALRGGTVDYVDANRVVIRVNDEEATAGEVGVDIYNLVKYTRSNQNTNINQRP 776 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V GD + D+IADG STDLG+LALG+NML+AFMPW+GYNFEDS++ISE++VS+D +T Sbjct: 777 IVSKGDRLAAGDVIADGASTDLGELALGQNMLIAFMPWNGYNFEDSVMISEKVVSDDRYT 836 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N+SE L +DE GI+ +GAEV+ GD LVGK+TP Sbjct: 837 SIHIEELSVLARDTKLGPEEITRDISNLSESQLARLDESGIVYIGAEVSAGDTLVGKVTP 896 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV++F R GI +++R+ S+ Sbjct: 897 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMNGTVIDVQVFTREGITRDKRAQSII 956 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 ++++ D +D+ I++ + +SR+ L G+ A GPK K TV++ D + + R Sbjct: 957 DDELKRFRLDLNDQLRIVENDAFSRIERFLDGKEANGGPKKLAKGTVVTRDYLKDLDRYH 1016 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W++ + +E+ R +E +K E + + F+ K +K+ GD++PPGVL++VKV++A+ Sbjct: 1017 WFEVRLANEEDARWLEGMKDAIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAV 1076 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VSRI+P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1077 KRRLQPGDKMAGRHGNKGVVSRIVPIEDMPYMADGTPCDIVLNPLGVPSRMNVGQILETH 1136 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA G+G +I +++ + +S LR +L+KV +S+ DD +L +A Sbjct: 1137 LGWAAKGVGLRIGEMLDRH---VKVSELRRYLDKVYNDRGEKANLSELSDDELLAMANNL 1193 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMA-----------DLDES-GQSILYDGLTGEPFDRP 1248 + GVP +TPVFDGA EE I++ L +A S Q IL DG TG+PFDRP Sbjct: 1194 RDGVPFATPVFDGATEEEIHAALDLAFPSDDPRTEKLGFTPSKTQLILRDGRTGDPFDRP 1253 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 VTVGY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+ Sbjct: 1254 VTVGYMHFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAS 1313 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 Y LQEMLT+KSDDV GR +VYE++V G + G PESFNVLVKE+++LG+ IDLE + Sbjct: 1314 YTLQEMLTVKSDDVTGRAKVYENMVKGEHAIDAGMPESFNVLVKEIRSLGIDIDLERA 1371 >gi|117621409|ref|YP_858456.1| DNA-directed RNA polymerase subunit beta [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562816|gb|ABK39764.1| DNA-directed RNA polymerase, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1363 Score = 1644 bits (4256), Expect = 0.0, Method: Composition-based stats. Identities = 697/1364 (51%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK +++D P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 22 MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEAD----PEGEYGLEAAFRSV 77 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPIT++SG+A L++VSY P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 78 FPITSYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TV 135 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 136 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 195 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD + VRIDRRRK+P + L AL SE+IL+TF+ I + + Sbjct: 196 RVIPYRGSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFSSEQILATFFETIGFEVKD 255 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + +V G V+E+G+++T+ ++ L++ V + + + Sbjct: 256 GKLMMDLVPERL-RGETATFDIV--ANGAVVVETGRRVTARHIRQLEKDSVTQIEVPVEY 312 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D + +TGE+ + A + +++ + + + +L+ + +++ AY+ TL Sbjct: 313 VVGKVAAKDYAHPQTGEMVVTANQALSLEAVANLSQAGFKHFEVLFTNELDHGAYMSETL 372 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + R +AL++IYR+MRPG+ T AE +F LFF S++YDLSTVGR+K N RL Sbjct: 373 RIDSSSSRLEALVEIYRMMRPGEPPTREAAEQLFENLFFSSERYDLSTVGRMKFNRRLAR 432 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + V + K+DI+ ++K L+D+RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 433 EDETGVGTLTKDDIVDVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 492 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 493 ERAVKERLSLGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 552 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ ++R N YGF+ETPY Sbjct: 553 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYSRTNEYGFLETPY 612 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T++V YLSA+EE IAQAN++ EDG +EL+ CR GE + ++I Sbjct: 613 RKVIDGVITDEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHKGESTFMNADQIQ 672 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 673 YMDVSPQQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVD 732 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+++ VDA RIVI+ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 733 SGVTVVAKRGGMIDYVDASRIVIKVNEDELLPGEAGIDIYSLTKYTRSNQNTCINQRPCV 792 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V D++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDS+L++ER+V ED T+I Sbjct: 793 MLGEPVMAGDVLADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILVNERVVQEDRLTTI 852 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 853 HIQELACISRDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKG 912 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GV GTVVDV++F R G++K++R+ +E Sbjct: 913 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGVEKDKRAKEIEEM 972 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ I+ R +L S D +++ RS+W+ Sbjct: 973 QLKEAKKDLTEEFKILEDGIFGRSRNLLLAAG-------------YSEDRLNKLDRSKWF 1019 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + A++DE Q +E + Q+ K+ + +F+NK KI GDD+ PGVL++VKV++A+KR Sbjct: 1020 ELAIEDEAKQIELEQIAEQHVELKAEFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKR 1079 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1080 RIQPGDKMAGRHGNKGVISKICPVEDMPHDEYGRPVDIVLNPLGVPSRMNIGQILEVHLG 1139 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI ++ + + ++ + + + +++ DD V + + Sbjct: 1140 LAAKGIGEKIDRMVKEQRELHEMRDFLQQVYDLGEKDTQQVNVAELSDDDVRTLVGNLRK 1199 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+PV+TPVFDGA E I ++L++ADL ESGQ L+DG TG F+R VTVGY+YMLKLNH+ Sbjct: 1200 GLPVATPVFDGAKEREIKALLKLADLPESGQIALFDGRTGNAFERKVTVGYMYMLKLNHL 1259 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1260 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1319 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+L+ Sbjct: 1320 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELDEE 1363 >gi|163859286|ref|YP_001633584.1| DNA-directed RNA polymerase subunit beta [Bordetella petrii DSM 12804] gi|226699375|sp|A9IJ25|RPOB_BORPD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|163263014|emb|CAP45317.1| DNA-directed RNA polymerase beta chain [Bordetella petrii] Length = 1370 Score = 1644 bits (4256), Expect = 0.0, Method: Composition-based stats. Identities = 696/1375 (50%), Positives = 958/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++ D+P L+ Q SY FL + P +R +EGLQAAF S+ Sbjct: 1 MPYSYTEKKRIRKSFAKREDVQDVPFLLATQLQSYLTFLQADTPPSDRASEGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P FDV +C R LTYA PL+ +RL++ D +I Sbjct: 61 FPIVSHNGMARLEFVSYVLGEPVFDVKECQQRGLTYASPLRAKVRLVLLDR--EVSKPTI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ R+DRRRK+PVT L A+GM E IL+ F+ + + Sbjct: 179 RVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFELKS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + G + G ++E K++ + L+ + ++ + + + Sbjct: 239 EGGMIEFVPE-RWKGEMARFDI-TGRDGNVIVEKDKRINAKHLRDMANANIQRVSVPEEF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D I E L + + +RDI LY + ++ YI TL Sbjct: 297 LYGRVLAKNIVDPDTGEVVAHANDEITESVLSALRAANVRDIQTLYTNDLDRGPYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL Sbjct: 357 RTDETADQMAARVAIYRMMRPGEPPTEDAVEALFQRLFYSEETYDLSRVGRMKVNSRLGR 416 Query: 423 DTP-DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + EDI+ IK+LV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R Sbjct: 417 GEDITGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 477 VERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRV 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR+N YGF+ETP Sbjct: 537 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETP 596 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DGKV++ + YLSA+EE N IAQAN++LD++G F ++LV CR AGE +L + Sbjct: 597 YRKIIDGKVSDQIDYLSAIEESNYVIAQANAALDDEGRFVDDLVACREAGETMLTAPANV 656 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 657 HYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPVVGTGVERTVAV 716 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 717 DSGTTVQALRGGVVDHVDAERVVIRVNDDENVAGEVGVDIYNLIKYTRSNQNTNINQRPI 776 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD+V + D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TS Sbjct: 777 VKRGDKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTS 836 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE V+ARDTKLGPEEITRDI N++E L +D+ GI+ +GAEV D+LVGK+TPK Sbjct: 837 IHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGIVYIGAEVTADDVLVGKVTPK 896 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R GI +++R+ S+ Sbjct: 897 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIVRDKRAQSIID 956 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +++ +D +D+ I++ + + R+ ++L G+ GP+ K ++ +++ R QW Sbjct: 957 DELRRYRQDLNDQLRIVENDQFDRIEKLLIGKTVNGGPRKLAKGATITKAYLADLDRWQW 1016 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE +E K E + + F+ K +K+ GD++PPGVL+++KV++A+K Sbjct: 1017 FDIRLADEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVK 1076 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VSRI P EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1077 RRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHL 1136 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G +I ++ D + + +R++L+KV T E+I DD V+ +A+ K Sbjct: 1137 GWAAKGVGHRIADMLRDERT-AQVKNVRAYLDKVYNTTGTGEQIDTLTDDEVMELAQNLK 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDE----------SGQSILYDGLTGEPFDRPVTV 1251 +GVP +TPVFDGA EE I ML +A DE Q+ L+DG TGE F+RPVTV Sbjct: 1196 NGVPFATPVFDGATEEEIGKMLELAYPDEVAKRMQLTDSRTQAWLFDGRTGEKFERPVTV 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDD+ GRT+VYE+IV G+ + G PESFNVLVKE+++L L +DLE + Sbjct: 1316 QEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN 1370 >gi|327479317|gb|AEA82627.1| DNA-directed RNA polymerase subunit beta [Pseudomonas stutzeri DSM 4166] Length = 1329 Score = 1643 bits (4255), Expect = 0.0, Method: Composition-based stats. Identities = 715/1337 (53%), Positives = 968/1337 (72%), Gaps = 10/1337 (0%) Query: 31 EVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDD 90 +Q SY FL D+ + GL AAFKSVFPI ++SG A LE+V Y P FDV + Sbjct: 2 AIQLDSYREFLQAGATKDQFRDIGLHAAFKSVFPIISYSGNAALEYVGYRLGEPAFDVKE 61 Query: 91 CLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQ 150 C+ R +T+AVPL++ +RLI+FD + K+IKDIKEQ +YMG++PLMT++GTF+I G + Sbjct: 62 CVLRGVTFAVPLRVKVRLIIFDK--ESSNKAIKDIKEQEVYMGEIPLMTENGTFIINGTE 119 Query: 151 RIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRR 210 R++VSQLHRSPG+ FDHD+G+ SGKLLY+ RIIP +G W+D EFD KD + VRIDRRR Sbjct: 120 RVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDAVFVRIDRRR 179 Query: 211 KVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTG 270 K+P + L AL +EEIL FY V+ +G+ L L G + + D D+G Sbjct: 180 KLPASVLLRALNYSTEEILDAFYDTNVFHVKGETLALELVPQRL-RGEIATFDIKD-DSG 237 Query: 271 EQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDE 330 + ++E G+++T+ + L + G+K L + D + G VA+ IV+ TGEI E + Sbjct: 238 KVIVEQGRRITARHINQLDKSGIKELEMPMDYVLGRTVAKAIVHPATGEIIAECNTELTV 297 Query: 331 KSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFS 390 + +I +++ LY + ++ +I +TL D ++ +AL++IYR+MRPG+ T Sbjct: 298 DVMAKIVKAQVVRFETLYTNDIDCGPFISDTLKIDSTTNQLEALVEIYRMMRPGEPPTKD 357 Query: 391 VAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGK 450 AE++FN LFF +++YDLS VGR+K N R+ + + +EDI+A++K LVD+RNGK Sbjct: 358 AAETLFNNLFFAAERYDLSAVGRMKFNRRIGRTEIEGSGVLSREDIVAVLKTLVDIRNGK 417 Query: 451 GTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVV 510 G +DDID+LGNRRVR VGEM +NQ+R+GL+R+ER++KER+S + + +MPQDLINAKPV Sbjct: 418 GIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDLINAKPVA 477 Query: 511 SAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRIC 570 +AV EFF SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+C Sbjct: 478 AAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVC 537 Query: 571 PAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQA 630 P ET EG NIGL++SL ++AR N YGF+E+PYR V DG+VT+++V+LSA+EE + IAQA Sbjct: 538 PIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKDGEVTDEIVFLSAIEEADHVIAQA 597 Query: 631 NSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRV 690 ++ L + +ELV R E + E + +D SPKQVVS+AASLIPFLE+DD+NR Sbjct: 598 SAKL-DGRKLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRA 656 Query: 691 LMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG 750 LMG NMQRQAVP L+++ P VGTGME VA+ SG +VA+R G+++ VDA RIV+R + Sbjct: 657 LMGSNMQRQAVPTLRSDKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVRDD 716 Query: 751 DLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRN 810 +++ +GVDIY L K+ RSNQNTC+NQRPLV+ GD V R DI+ADGPSTD+G+LALG+N Sbjct: 717 EVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGDVVARGDIMADGPSTDMGELALGQN 776 Query: 811 MLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSE 870 M VAFMPW+GYNFEDS+L+SER+V ED FT+IHI+E ++RDTKLGPEEIT DIPNV E Sbjct: 777 MRVAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQELTCVSRDTKLGPEEITADIPNVGE 836 Query: 871 EGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLR 930 L +DE GI+ VGAEV PGDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR Sbjct: 837 AALNKLDEAGIVYVGAEVGPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLR 896 Query: 931 VPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEIL 990 VP+G GTV+DV++F R G++++ R++++E+ Q++ + +D ++E I++ + RL L Sbjct: 897 VPTGTKGTVIDVQVFIRDGVERDSRALAIEKMQLDEIRKDLNEEFRIVEGATFERLRSAL 956 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G A G G KK V++ +++ QW++ + ++ + +E + + +L+ Sbjct: 957 VGATAEGG-AGLKKGVVITDEILDGLEHGQWFKLRMAEDALNEQLEKAQAYLSDRRQLLD 1015 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 D+F++K K+Q GDD+ PGVL++VKV++A+KR IQ GDKMAGRHGNKG+VS I+P EDMP Sbjct: 1016 DKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPGDKMAGRHGNKGVVSVIMPVEDMP 1075 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 +GTPVDIVLNPLGVPSRMNVGQI ETHLG A GLG+KI ++ + + ++ LR Sbjct: 1076 HDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINLMLEEQRK---VAELRK 1132 Query: 1171 FLEKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLD 1229 FL ++ G E + D D VL +A + GVP++TPVFDGA E I +ML++ADL Sbjct: 1133 FLHEIYNEIGGRQENLDDLSDQEVLDLANNLRKGVPMATPVFDGAKEREIKAMLKLADLP 1192 Query: 1230 ESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNR 1289 ESGQ L+DG TG F+R TVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ Sbjct: 1193 ESGQMQLFDGRTGNAFERTTTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1252 Query: 1290 GGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV G+ E G PESFNV Sbjct: 1253 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEAGMPESFNV 1312 Query: 1350 LVKEMQALGLSIDLENS 1366 L+KE+++LG+ IDLE Sbjct: 1313 LIKEIRSLGIDIDLETE 1329 >gi|78099466|gb|ABB20869.1| RNA polymerase subunit B [Acinetobacter towneri] Length = 1362 Score = 1643 bits (4254), Expect = 0.0, Method: Composition-based stats. Identities = 716/1374 (52%), Positives = 973/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKTPKSREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG +E+IL F+ K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYSNEQILDLFFEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G++ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDITDTD-GKVIVEQGKRINARHVRQMEAAGLEKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + G++ A ++ + + ++ ++ IL+ + ++ ++I +TL Sbjct: 295 LYERITAEDIQLKD-GDVIA-ANTLLSHEIMVKLAEGGVKQFNILFTNDIDRGSFIADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R+DAL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTVGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDI ++K L+++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDITDVLKTLIEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKCNN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+SS+D+DG+ TEE V R G+ + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTIIAQADSSVDQDGNLTEEFVSVRHQGDFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P E++ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMPPERVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA SG ++A R G +E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVAHDSGVCVIANRGGRIEYVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LVK+GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVKMGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIIRLLKGQESNGGGTT-KRGDKLSEDMLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++ + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLALVDLLEIQPSDEAIAERLTQIQTFLKEKSFEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ K +I+ LR+FL+K+ G E + DD + Sbjct: 1132 QILETHLGMAAKGLGEQIDKML---KQQREIAELRAFLDKIYNKVGGEQEDLDSLTDDEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L +A ++GVP++TPVFDGA+E I +L +A+L SGQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LVLAGNLRAGVPLATPVFDGAEEGQIKELLELAELPRSGQTVLYDGRTGEKFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|46143683|ref|ZP_00134648.2| COG0085: DNA-directed RNA polymerase, beta subunit/140 kD subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209191|ref|YP_001054416.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae L20] gi|307257815|ref|ZP_07539572.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|158513515|sp|A3N325|RPOB_ACTP2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|126097983|gb|ABN74811.1| DNA-directed RNA polymerase beta chain [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306863721|gb|EFM95647.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 1342 Score = 1643 bits (4254), Expect = 0.0, Method: Composition-based stats. Identities = 709/1367 (51%), Positives = 974/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q SY+ F+ + +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSYEKFIQRDSD----GQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G+ L++VSYE P FDV +C R TYA PL++ LRL+ FD + G ++ Sbjct: 57 FPIVSNNGSTELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEILS F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILSMFFDKVNFEIQD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +++L++ G+ + + + Sbjct: 235 NKLLMTLVPERL-RGETAAFDIE--ANGKVYVERGRRITARHIRTLEKDGITQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A I + L ++ + ++I +L+ + +++ YI TL Sbjct: 292 IVGKVAAKDYVDLSTGEVVCPANMEISMEMLAKLSQAGYKEIEVLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ +FF +D+YDLS VGR+K N LNL Sbjct: 352 RVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSLNL 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DI ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEGVGSGILSNDDITGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D + PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 532 ALGPGGLTRERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT D+ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E I Sbjct: 592 RKVVNGQVTEDIEYLSAIEEGNYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG AIVAKR GIV++VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAIVAKRGGIVQRVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VNLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ +++R+ +L S + + R +W Sbjct: 952 MQLKEAKKDLTEELEILEAGLFTRVRNLLIEGGV-------------SEAELDKVAREKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A++ Sbjct: 999 LEQTLDDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVR 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K ++ LR +++K G GS + +S + D+ V+R+AE Sbjct: 1119 GLAAKGIGDQINAMI---KQQQSVAKLREYIQKAYDLGHGSQSVDLSTFTDEEVMRLAEN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E I +L + L SGQ L+DG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G E G PESFNVL+KE++ALG+ ++L+ Sbjct: 1296 DDVNGRTKMYKNIVDGTHQMEPGMPESFNVLLKEIRALGIDMELDEE 1342 >gi|126090320|ref|YP_001041763.1| DNA-directed RNA polymerase, beta subunit [Shewanella baltica OS155] gi|152998742|ref|YP_001364423.1| DNA-directed RNA polymerase subunit beta [Shewanella baltica OS185] gi|304412758|ref|ZP_07394360.1| DNA-directed RNA polymerase, beta subunit [Shewanella baltica OS183] gi|307307422|ref|ZP_07587157.1| DNA-directed RNA polymerase, beta subunit [Shewanella baltica BA175] gi|166229305|sp|A6WHS1|RPOB_SHEB8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|182676572|sp|A3DB95|RPOB_SHEB5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|125999940|gb|ABN64008.1| DNA-directed RNA polymerase, beta subunit [Shewanella baltica OS155] gi|151363360|gb|ABS06360.1| DNA-directed RNA polymerase, beta subunit [Shewanella baltica OS185] gi|304348838|gb|EFM13254.1| DNA-directed RNA polymerase, beta subunit [Shewanella baltica OS183] gi|306910210|gb|EFN40643.1| DNA-directed RNA polymerase, beta subunit [Shewanella baltica BA175] gi|315265546|gb|ADT92399.1| DNA-directed RNA polymerase, beta subunit [Shewanella baltica OS678] Length = 1343 Score = 1642 bits (4253), Expect = 0.0, Method: Composition-based stats. Identities = 699/1364 (51%), Positives = 961/1364 (70%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D GL+AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPKVLDIPYLLSIQLDSFKKF----TDQDPTGERGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL ++EIL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATIMLRALEYSTQEILDLFFERVEFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + D + G ++E+G+++T+ ++ L++ L + + Sbjct: 235 DTLVMALVPERL-RGETASYDIKDAE-GSVLVEAGRRITARHIRQLEKTNTTELEVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y A+D ++ +TGE+ + A I + L ++ + I+++ LY++ +++ AYI +TL Sbjct: 293 IVGKYAAQDYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL++ Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 PDDEGSGVLSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T++V YLSA+EE IAQAN +D +G EE + CR GE + I Sbjct: 593 RKVIDGVITDEVEYLSAIEEGRYVIAQANIEIDANGRMAEEQIACRHKGESTFMRAADIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVVAKRGGFVDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGEPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ + SR +L G + I+ PR Sbjct: 953 HIAQARKDLGEEFKILEEGVLSRARNLLIGAG-------------FTDAQIAALPRKDVL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q+E K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 IQVIDDETKQTELEQLAEQHEELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQ+ E H+G Sbjct: 1060 TIQPGDKMAGRHGNKGVISKICPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHMG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + ++ + ++ I + DD VLR+A K Sbjct: 1120 AAAKGIGNKITAMLEEQRELAEVRGYIKQVYELGDEVQQRVDIDSFTDDEVLRLATNLKG 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E+ I ML +A L SGQ L+DG TG F+R VTVGY+YMLKLNH+ Sbjct: 1180 GIPIATPAFDGAKEKEIKQMLELAGLPTSGQLKLFDGRTGNEFERQVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ + Sbjct: 1300 NGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQA 1343 >gi|325926960|ref|ZP_08188238.1| DNA-directed RNA polymerase subunit beta [Xanthomonas perforans 91-118] gi|325542672|gb|EGD14136.1| DNA-directed RNA polymerase subunit beta [Xanthomonas perforans 91-118] Length = 1383 Score = 1642 bits (4253), Expect = 0.0, Method: Composition-based stats. Identities = 706/1389 (50%), Positives = 967/1389 (69%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ P++R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT +GTF++ G +R++ SQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTGNGTFIVNGTERVIFSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EE+L+ F+ + D Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ GV L + D L Sbjct: 241 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+G TGE+ A D I+E L + + + L+V+ ++ Y+ NTL Sbjct: 299 VGRILSHDVVDGSTGELLANANDEINEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A +IK+L ++RNG+G +DDID+LGN Sbjct: 419 DVLGESVLYDKKYFAERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A R G++EQ+DA RIV++ E + +GVD Sbjct: 719 PTLRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A G Sbjct: 959 DVQVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGG-A 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK ++ + +S W+Q ++DE +E + Q + + E RF +K KI Sbjct: 1018 NLKKGDTVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G VDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGESVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI+ ++ +A +S LR FL + + Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRML---EAQAAVSELRKFLNDIYNHDN 1194 Query: 1181 HTE----KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + D+ +L + + GVP++TPVFDGA E I ML +ADL +SGQ+ L Sbjct: 1195 AINAQRVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADLPQSGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLEN 1365 L ++++LE Sbjct: 1375 LAINMELEE 1383 >gi|114045700|ref|YP_736250.1| DNA-directed RNA polymerase subunit beta [Shewanella sp. MR-7] gi|123031029|sp|Q0I0B2|RPOB_SHESR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158564100|sp|Q0HNU4|RPOB_SHESM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|113887142|gb|ABI41193.1| DNA-directed RNA polymerase, beta subunit [Shewanella sp. MR-7] Length = 1345 Score = 1642 bits (4253), Expect = 0.0, Method: Composition-based stats. Identities = 707/1367 (51%), Positives = 967/1367 (70%), Gaps = 25/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D GL+AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKF----TDQDPTGERGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL ++EIL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + D + G ++E+G+++T+ ++ L++ L + + Sbjct: 235 DTLVMTLVPERL-RGETASYDIKDAE-GSVLVEAGRRITARHIRQLEKTNTTELEVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y A+D ++ +TGE+ + A I + L ++ + I+++ LY++ +++ AYI +TL Sbjct: 293 IVGKYAAQDYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL++ Sbjct: 353 RIDPTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 PDDEGSGVLSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T+DV YLSA+EE IAQAN +D G EE + CR GE + I Sbjct: 593 RKVVDGVITDDVEYLSAIEEGRYVIAQANIEVDSQGRMVEEQIACRHKGESTFMRASDIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP LK+E P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLKSEKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + AKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVAAKRGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGEPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R+I +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAIEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ + SR +L + I+ PR Sbjct: 953 HIAQARKDLGEEFKILEEGVLSRARNLLLSAG-------------FTEAQIAALPRKDVL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q+E K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 VQVIDDETKQTELEQLAEQHEELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQ+ E HLG Sbjct: 1060 TIQPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE---KISDYDDDSVLRVAEQ 1199 A G+G KI +++ D + G ++ +RS++++V G + I + DD +LR+A Sbjct: 1120 AAAKGIGNKIAAMLEDQREKG-LAEVRSYIKQVYELGDEVQQRVDIDSFTDDELLRLANN 1178 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 K G+PV+TP FDGA E+ I ML +A L SGQ L+DG TG F+RPVTVGY+YMLKL Sbjct: 1179 LKGGIPVATPAFDGAKEKEIKQMLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKL 1238 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1239 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1298 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1299 DDVNGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQE 1345 >gi|308047973|ref|YP_003911539.1| DNA-directed RNA polymerase subunit beta [Ferrimonas balearica DSM 9799] gi|307630163|gb|ADN74465.1| DNA-directed RNA polymerase subunit beta [Ferrimonas balearica DSM 9799] Length = 1341 Score = 1642 bits (4253), Expect = 0.0, Method: Composition-based stats. Identities = 721/1366 (52%), Positives = 975/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 R+RK FGK P+++D+P L+ +Q S+ +FL + GL+AAF+SV Sbjct: 1 MVYSDFEKKRIRKDFGKRPKVLDVPYLLSIQLDSFQNFLEQD----PDGERGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LRL++ D + + Sbjct: 57 FPIKSFSGYSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRLVLMDKEAGGA---V 113 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 114 KDIKEQEVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 173 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L ALG ++EIL F+ K+ +S + Sbjct: 174 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALGYSTQEILDLFFEKVQFSLKK 233 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L D + G + D + G+ ++E G+++T+ ++ L++ VK L + + Sbjct: 234 DKLVMDLVP-DRLRGETALFDIKD-NNGDLIVEKGRRVTARHIRQLEKGDVKQLEVAVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G A+D ++ TGE+ + A + + + ++ + I+ LY + +++ YI TL Sbjct: 292 LVGKVAAQDYIDDATGEVVVHANQELSLEDVAKLSQAGIKSFETLYTNDLDHGPYISTTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR +AL++IYR+MRPG+ T AE++F LFF D+YDLSTVGR+K N RL Sbjct: 352 QVDNTSDRMEALVEIYRMMRPGEPPTREAAEALFENLFFSEDRYDLSTVGRMKFNRRLGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D V + KEDI+ +++ ++++RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DESTGVGILTKEDIVDVMRKIIEIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDALMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETP+ Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSTFARTNEYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DGKVT +V YLSA+EE N IAQAN+ LD+DG+ T+ELV R GE I +++D Sbjct: 592 RRVIDGKVTEEVEYLSAIEEGNFVIAQANAQLDDDGNLTDELVAARQKGESIFASADQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA Sbjct: 652 FMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+V+ VDA RIVI+ E +L +G+DIY L K+ RSNQNTC+NQRP+ Sbjct: 712 SGVTVVAKRGGVVDYVDASRIVIKVSEDELMAGEAGIDIYNLTKYTRSNQNTCINQRPVC 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+N+ VAFM W+GYNFEDS+L+SER+V ED T+I Sbjct: 772 AVGEPVTRGDVLADGPSTDLGDLALGQNLRVAFMTWNGYNFEDSILLSERVVQEDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAE+ PGDILVGK+TPKG Sbjct: 832 HIQELSCIARDTKLGPEEITADIPNVGESALSKLDESGIVYVGAEMKPGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GV GTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVYGTVIDVQVFTRDGVEKDKRAVDIENM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E IL+ IY+R +L G S + + R +W Sbjct: 952 QLRDAKKDLTEEFSILENGIYNRARTLLLGAG-------------FSEAQLDKLSRDKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QYE K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQPLDDEGKQTELEQLADQYEELKAEFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISTIVPVEDMPHDENGVPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ + + LR F++K G ++ + D VLR+A+ Sbjct: 1119 MAAKGIGDKINGMLEQQR---KVEELREFMQKAYDLGNTQQKVDLATFSDAEVLRLADNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K G+PV+TP FDGA E I MLR+A+L +SGQ LYDG TG F+RPVTVGY+YMLKLN Sbjct: 1176 KGGLPVATPAFDGAAEAEIKEMLRLAELPDSGQFTLYDGRTGNAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN + G PESFNV++KE+++LG++I+L+ Sbjct: 1296 DVNGRTQMYKNIVDGNYQMQPGMPESFNVVLKEIRSLGINIELDQE 1341 >gi|73542873|ref|YP_297393.1| DNA-directed RNA polymerase subunit beta [Ralstonia eutropha JMP134] gi|88909634|sp|Q46WD4|RPOB_RALEJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|72120286|gb|AAZ62549.1| DNA-directed RNA polymerase, beta subunit [Ralstonia eutropha JMP134] Length = 1368 Score = 1642 bits (4253), Expect = 0.0, Method: Composition-based stats. Identities = 696/1375 (50%), Positives = 952/1375 (69%), Gaps = 20/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL R EGLQAAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIESYTQFLQAETPAARRKTEGLQAAFNAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A +EFVSY P FDV +C R LT+ L+ +RLI+ D + + Sbjct: 61 FPIASHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPG---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEVKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L ++G+ E+IL+ F+ ++ + Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLQS 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G V+E K++ + ++ L G K + + D Sbjct: 238 EGAQLEFVPERL-RGEVARFDIAD-KNGRVVVEKDKRINAKHIRDLDSAGTKLISVPEDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++I++ +TGE+ A D + E LE + + ++ I LY + ++ Y+ TL Sbjct: 296 LLGRVLAKNIIDPDTGEVIANANDELTETVLENLREAGVKQIQTLYTNDLDQGPYMSQTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL+ Sbjct: 356 RVDETADQTAARIAIYRMMRPGEPPTEEAVEALFQRLFYSEESYDLSRVGRMKVNSRLSR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + ++ EDI+ IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 PSGEGSMVLQDEDILETIKILVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPREK 660 RKV + K+T+ V YLSA+EE +AQAN+++D +G+ T+ELV R E +V ++ Sbjct: 596 RKVENSKLTDQVDYLSAIEEGKYVVAQANATVDAEGNLTDELVSAREGSERETRMVTPDR 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + +ID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+ + P VGTG+E VA Sbjct: 656 VQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGIERTVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA+RIVIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 716 VDSGTAVQAMRGGVVDYVDAMRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VKVGD V R D++ADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 776 MVKVGDIVARGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N++E L +DE GI +GAEV GD+LVGK+TP Sbjct: 836 SIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVLVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SG V+DV++F R G+ +++R+ S+ Sbjct: 896 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGIVIDVQVFTREGVTRDKRAQSII 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 ++++ D +D+ I++ + + RL +L + GPK K L+ + ++E + Sbjct: 956 DDELKRYRLDLNDQLRIVEGDAFQRLERLLIDKTVNGGPKKLAKGAKLTKEYLAEIDKYH 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ DE+V +E++K E + + F+ K +K+ GD++PPGV+++VKV++A+ Sbjct: 1016 WFDIRPADEEVAAQLEAVKEAIEQKRHEFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAV 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1076 KRRLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG++I ++ KA+ LR L ++ E + D VL +A Sbjct: 1136 LGWAARGLGQRIGDML---KASAKAQELRPLLAQIYNESGKAEDLDSLSDAEVLELATNL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQS----------ILYDGLTGEPFDRPVT 1250 K GVP +TPVFDGA E+ I ML +A D+ + L+DG TGE F+RPVT Sbjct: 1193 KKGVPFATPVFDGAHEDEIRRMLDLAYPDDIAKEKGLTASKQQVTLHDGRTGEAFERPVT 1252 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 +G ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YV Sbjct: 1253 LGVMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYV 1312 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 LQEMLT+KSDDV GRT+VYE+IV G + + G PESFNVLVKE+++LG+ IDL+ Sbjct: 1313 LQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLDR 1367 >gi|217975208|ref|YP_002359959.1| DNA-directed RNA polymerase subunit beta [Shewanella baltica OS223] gi|254765303|sp|B8EBL2|RPOB_SHEB2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|217500343|gb|ACK48536.1| DNA-directed RNA polymerase, beta subunit [Shewanella baltica OS223] Length = 1343 Score = 1642 bits (4253), Expect = 0.0, Method: Composition-based stats. Identities = 700/1364 (51%), Positives = 961/1364 (70%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D GL+AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPKVLDIPYLLSIQLDSFKKF----TDQDPTGERGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL ++EIL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATIMLRALEYSTQEILDLFFERVEFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + D + G ++E+G+++T+ ++ L++ L + + Sbjct: 235 DTLVMALVPERL-RGETASYDIKDAE-GSVLVEAGRRITARHIRQLEKTNTTELEVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y A+D ++ +TGE+ + A I + L ++ + I+++ LY++ +++ AYI +TL Sbjct: 293 IVGKYAAQDYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL++ Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 PDDEGSGVLSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T++V YLSA+EE IAQAN +D +G EE + CR GE + I Sbjct: 593 RKVIDGVITDEVEYLSAIEEGRYVIAQANIEIDANGRMAEEQIACRHKGESTFMRAADIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVVAKRGGFVDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGEPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ + SR +L G S I+ PR Sbjct: 953 HIAQARKDLGEEFKILEEGVLSRARNLLIGAG-------------FSDAQIAALPRKDVL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q+E K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 IQVIDDETKQTELEQLAEQHEELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQ+ E H+G Sbjct: 1060 TIQPGDKMAGRHGNKGVISKICPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHMG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + ++ + ++ I + DD VLR+A K Sbjct: 1120 AAAKGIGNKITAMLEEQRELAEVRGYIKQVYELGDEVQQRVDIDSFTDDEVLRLATNLKG 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E+ I ML +A L SGQ L+DG TG F+R VTVGY+YMLKLNH+ Sbjct: 1180 GIPIATPAFDGAKEKEIKQMLELAGLPTSGQLKLFDGRTGNEFERQVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ + Sbjct: 1300 NGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQA 1343 >gi|78099462|gb|ABB20867.1| RNA polymerase subunit B [Acinetobacter tandoii] Length = 1362 Score = 1642 bits (4252), Expect = 0.0, Method: Composition-based stats. Identities = 713/1374 (51%), Positives = 968/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPSVMDAPYLLAIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L AL +E+IL FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALDYSNEQILDLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDITDND-GKVIVEQGKRINARHVRQMEASGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L A+DI + GE+ A ++ + + ++ ++ IL+ + ++ ++I ++L Sbjct: 295 LYERITAQDITLRD-GEVI-PANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFIADSL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + DI ++K LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNSDITDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAEADNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKCNN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S++D D TEE V R G+ + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSAVDADNHLTEEFVSVRHQGDFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G +E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGAIEYVDASRIVIRVNEEEMVAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V++GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVVVRMGDKVARGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVAAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G G K+ LS D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLSGQESNGG-GGTKRGDKLSEDMLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPSDEAIAERLTQIQVFLKEKSFEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ K +I+ LR FL+K+ G E + DD + Sbjct: 1132 QILETHLGMAAKGLGEQIDKML---KQQREIAELRVFLDKIYNKVGGQQEDLDSLTDDEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L +A ++GVP++TPVFDGA+E I +L +A++ SGQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LVLAGNLRAGVPLATPVFDGAEESQIKELLELAEIPRSGQTVLYDGRTGERFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|303249970|ref|ZP_07336172.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651033|gb|EFL81187.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 1342 Score = 1642 bits (4252), Expect = 0.0, Method: Composition-based stats. Identities = 709/1367 (51%), Positives = 974/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q SY+ F+ + +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSYEKFIQRDSD----GQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G+ L++VSYE P FDV +C R TYA PL++ LRL+ FD + G ++ Sbjct: 57 FPIVSNNGSTELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEILS F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILSMFFDKVNFEIQD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +++L++ G+ + + + Sbjct: 235 NKLLMTLVPERL-RGETAAFDIE--ANGKVYVERGRRITARHIRTLEKDGITQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A I + L ++ + ++I +L+ + +++ YI TL Sbjct: 292 IVGKVAAKDYVDLSTGELVCPANMEISMEMLAKLSQAGYKEIEVLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ +FF +D+YDLS VGR+K N LNL Sbjct: 352 RVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSLNL 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DI ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEGVGSGILSNDDITGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D + PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 532 ALGPGGLTRERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT D+ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E I Sbjct: 592 RKVVNGQVTEDIEYLSAIEEGNYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG AIVAKR GIV++VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAIVAKRGGIVQRVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VNLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ +++R+ +L S + + R +W Sbjct: 952 MQLKEAKKDLTEELEILEAGLFTRVRNLLIEGGV-------------SEAELDKVAREKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A++ Sbjct: 999 LEQTLDDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVR 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K ++ LR +++K G GS + +S + D+ V+R+AE Sbjct: 1119 GLAAKGIGDQINAMI---KQQQSVAKLREYIQKAYDLGHGSQSVDLSTFTDEEVMRLAEN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E I +L + L SGQ L+DG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G E G PESFNVL+KE++ALG+ ++L+ Sbjct: 1296 DDVNGRTKMYKNIVDGTHQMEPGMPESFNVLLKEIRALGIDMELDEE 1342 >gi|24371822|ref|NP_715864.1| DNA-directed RNA polymerase, beta subunit [Shewanella oneidensis MR-1] gi|41018043|sp|Q8EK74|RPOB_SHEON RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|24345631|gb|AAN53309.1|AE015472_1 DNA-directed RNA polymerase, beta subunit [Shewanella oneidensis MR-1] Length = 1345 Score = 1642 bits (4252), Expect = 0.0, Method: Composition-based stats. Identities = 705/1367 (51%), Positives = 968/1367 (70%), Gaps = 25/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D GL+AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKF----TDQDPTGERGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL ++EIL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + D + G ++E+G+++T+ ++ L++ L + + Sbjct: 235 DTLVMTLVPERL-RGETASYDIKDAE-GTVLVEAGRRVTARHIRQLEKTNTTELEVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y A+D ++ +TGE+ + A I + L ++ + I+++ LY++ +++ AYI +TL Sbjct: 293 IVGKYAAQDYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL++ Sbjct: 353 RIDPTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 PDDEGSGVLSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T++V YLSA+EE IAQAN +D +G EE + CR GE + I Sbjct: 593 RKVVDGVITDEVEYLSAIEEGRYVIAQANIEVDSEGRMVEEQIACRHKGESTFMRASDIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + AKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVAAKRGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGEPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R+I +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAIEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ + SR +L S I+ PR Sbjct: 953 HIAQARKDLGEEFKILEEGVLSRARNLLLSAG-------------FSEAQIAALPRKDVL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q+E K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 VQVIDDEAKQTELEQLAEQHEELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQ+ E HLG Sbjct: 1060 TIQPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE---KISDYDDDSVLRVAEQ 1199 A G+G KI +++ D + G ++ +R+++++V G + I + DD +LR+A Sbjct: 1120 AAAKGIGHKIAAMLEDQREKG-LAEVRNYIKQVYELGDEVQQRVDIDSFTDDELLRLANN 1178 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 K G+PV+TP FDGA E+ I ML +A L SGQ L+DG TG F+RPVTVGY+YMLKL Sbjct: 1179 LKGGIPVATPAFDGAKEKEIKQMLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKL 1238 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1239 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1298 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1299 DDVNGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQE 1345 >gi|158512718|sp|A0KQA5|RPOB_AERHH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1342 Score = 1641 bits (4250), Expect = 0.0, Method: Composition-based stats. Identities = 697/1364 (51%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK +++D P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEAD----PEGEYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPIT++SG+A L++VSY P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPITSYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD + VRIDRRRK+P + L AL SE+IL+TF+ I + + Sbjct: 175 RVIPYRGSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFSSEQILATFFETIGFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + +V G V+E+G+++T+ ++ L++ V + + + Sbjct: 235 GKLMMDLVPERL-RGETATFDIV--ANGAVVVETGRRVTARHIRQLEKDSVTQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D + +TGE+ + A + +++ + + + +L+ + +++ AY+ TL Sbjct: 292 VVGKVAAKDYAHPQTGEMVVTANQALSLEAVANLSQAGFKHFEVLFTNELDHGAYMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + R +AL++IYR+MRPG+ T AE +F LFF S++YDLSTVGR+K N RL Sbjct: 352 RIDSSSSRLEALVEIYRMMRPGEPPTREAAEQLFENLFFSSERYDLSTVGRMKFNRRLAR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + V + K+DI+ ++K L+D+RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDETGVGTLTKDDIVDVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ ++R N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYSRTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T++V YLSA+EE IAQAN++ EDG +EL+ CR GE + ++I Sbjct: 592 RKVIDGVITDEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHKGESTFMNADQIQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSPQQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+++ VDA RIVI+ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTVVAKRGGMIDYVDASRIVIKVNEDELLPGEAGIDIYSLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V D++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDS+L++ER+V ED T+I Sbjct: 772 MLGEPVMAGDVLADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILVNERVVQEDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 832 HIQELACISRDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GV GTVVDV++F R G++K++R+ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGVEKDKRAKEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ I+ R +L S D +++ RS+W+ Sbjct: 952 QLKEAKKDLTEEFKILEDGIFGRSRNLLLAAG-------------YSEDRLNKLDRSKWF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + A++DE Q +E + Q+ K+ + +F+NK KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELAIEDEAKQIELEQIAEQHVELKAEFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKICPVEDMPHDEYGRPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI ++ + + ++ + + + +++ DD V + + Sbjct: 1119 LAAKGIGEKIDRMVKEQRELHEMRDFLQQVYDLGEKDTQQVNVAELSDDDVRTLVGNLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+PV+TPVFDGA E I ++L++ADL ESGQ L+DG TG F+R VTVGY+YMLKLNH+ Sbjct: 1179 GLPVATPVFDGAKEREIKALLKLADLPESGQIALFDGRTGNAFERKVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+L+ Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELDEE 1342 >gi|319787932|ref|YP_004147407.1| DNA-directed RNA polymerase subunit beta [Pseudoxanthomonas suwonensis 11-1] gi|317466444|gb|ADV28176.1| DNA-directed RNA polymerase, beta subunit [Pseudoxanthomonas suwonensis 11-1] Length = 1396 Score = 1641 bits (4250), Expect = 0.0, Method: Composition-based stats. Identities = 701/1402 (50%), Positives = 965/1402 (68%), Gaps = 47/1402 (3%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL + +R + GL AA KSVF Sbjct: 3 TYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYRDFLQADTDSAKRRDTGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI ++SG A LE+V Y+ P FD +C R L+Y PL++T+RL+++D + T K+IK Sbjct: 63 PIASYSGNAALEYVGYKLGEPVFDERECRNRGLSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT+ GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTEHGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD ++ RIDRRRK+PVT L ALG ++EE+L F+ + Sbjct: 181 IIPYRGSWLDFEFDPKDALYTRIDRRRKLPVTILLRALGYNNEEMLRAFFEINTFHIDPS 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G + L D + + ++E+GK++T+ ++ L++ G+ L + + L Sbjct: 241 EGVQLELVPERLRGETLGFDLADGE--KVIVEAGKRITARHVRQLEQSGITALAVPDEYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +A D+V+ TGE+ A D I ++ L + + + L+V+ ++ Y+ NTL Sbjct: 299 LGRILAHDVVDAATGELLAAANDEITDEHLAAFRKAGVASVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D ++ + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLS VGR+K N R+ Sbjct: 359 IDPSRTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSAVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + ++++L ++RNG+G +DDID+LGN Sbjct: 419 DVLGPAVLFDHKYFSERNDEDSKALVAAQGETSDILDVLRVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DG++T+ V YLSA+EE IAQ N++ D++G T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVVDGRITDQVEYLSAIEENEYVIAQVNAAHDKEGRLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E V R GE +L P +I ++D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EAFVPVRHQGESLLKPPGEIHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGD-LDPSTSGVD 760 P L+A+ P VGTG+E VA+ SG + A+R G V QVDA RIV+++ E + +GVD Sbjct: 719 PTLRAQTPLVGTGIERAVARDSGVTVNARRGGEVVQVDAGRIVVKANEEEISGEHDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L K+ RSNQNTC+NQRPLV VGD V R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYTLTKYTRSNQNTCINQRPLVHVGDVVARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEIT DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVQEDRYTTIHIEELTCVARDTKLGPEEITADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDILVGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I + +D DD+ IL+ IY+RL + G+ A GP Sbjct: 959 DVQVFTRDGIEKDKRAKQIEENEIRRVKKDFDDQFRILEAAIYARLRGQIVGKVANGGP- 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 G KK ++ + ++ W+ ++DE+ +E + Q + E RF +K KI Sbjct: 1018 GLKKGDAITDAYLDGLKKADWFLLRMKDEEASDAIERAQKQIAAHEKEFERRFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ DGTPVDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMADGTPVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG- 1179 LNPLGVPSRMN+GQI E HLGWA GLGK+I+ ++++ +A +S LR FL+KV Sbjct: 1138 CLNPLGVPSRMNIGQILEVHLGWAAKGLGKRIQKMLDEQRA---VSELREFLDKVYNHDS 1194 Query: 1180 ---SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES----- 1231 +S + D+ +L +A GVP++TPVFDGA E+ I ML +A + Sbjct: 1195 SLVGQRVDLSQFSDEELLGMARNLTGGVPMATPVFDGAYEDEIRQMLELAYPTDDPETVR 1254 Query: 1232 -G------QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLG 1284 G Q L+DG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLG Sbjct: 1255 LGFNATKTQMQLHDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLG 1314 Query: 1285 GKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTP 1344 GK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV GN G P Sbjct: 1315 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGNHEMVAGMP 1374 Query: 1345 ESFNVLVKEMQALGLSIDLENS 1366 ESFNVLVKE+++L ++++LE+ Sbjct: 1375 ESFNVLVKEIRSLAINMELEDE 1396 >gi|113869444|ref|YP_727933.1| DNA-directed RNA polymerase subunit beta [Ralstonia eutropha H16] gi|122946533|sp|Q0K606|RPOB_RALEH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|113528220|emb|CAJ94565.1| DNA-directed RNA polymerase beta subunit [Ralstonia eutropha H16] Length = 1368 Score = 1641 bits (4250), Expect = 0.0, Method: Composition-based stats. Identities = 697/1375 (50%), Positives = 953/1375 (69%), Gaps = 20/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +P L+ Q SY FL R EGLQAAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIESYTQFLQAETPTARRKTEGLQAAFNAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI++ +G A +EFVSY P FDV +C R LT+ L+ +RLI+ D + + Sbjct: 61 FPISSHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPG---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEVKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L ++G+ E+IL+ F+ ++ + Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLQA 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + D G V+E K++ + ++ L G K + + D Sbjct: 238 EGAQLEFVPERL-RGEVARFDIAD-KNGRVVVEKDKRINAKHIRDLDSAGTKLISVPEDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++I++ +TGE+ A D + E LE + + ++ I LY + ++ Y+ TL Sbjct: 296 LLGRVLAKNIIDPDTGEVIANANDELTETLLENLREAGVKQIQTLYTNDLDQGPYMSQTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL Sbjct: 356 RVDETADQTAARIAIYRMMRPGEPPTEEAVEALFQRLFYSEESYDLSRVGRMKVNSRLGR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + ++ EDI+ IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 PSGEGAMVLQDEDILETIKILVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA--GEEILVPREK 660 RKV D K+T+ V YLSA+EE +AQAN+++D DG+ T+ELV R E +V ++ Sbjct: 596 RKVVDSKLTDQVDYLSAIEEGKYVVAQANATVDADGNLTDELVSAREGSERETRMVTPDR 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + +ID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+ + P VGTG+E VA Sbjct: 656 VQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGIERTVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ A R G+V+ VDA+RIVIR + + GVDIY L+K+ RSNQNT +NQRP Sbjct: 716 VDSGTAVQAMRGGVVDYVDAMRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VKVGD V R D+IADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 776 MVKVGDHVARGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE V+ARDTKLGPEEITRDI N++E L +DE GI +GAEV GD+LVGK+TP Sbjct: 836 SIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVLVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SG V+DV++F R G+ +++R+ S+ Sbjct: 896 KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGIVIDVQVFTREGVTRDKRAQSII 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 ++++ D +D+ I++ + + RL +L + GPK K ++ + +++ R Sbjct: 956 DDELKRYRLDLNDQLRIVEGDAFQRLERLLIDKTVNGGPKKLAKGAKITKEYLADIDRYH 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ DE++ +E++K E + + F+ K +K+ GD++PPGV+++VKV++A+ Sbjct: 1016 WFDIRPADEELAAQLEAVKEAIEQKRHEFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAV 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I P EDMP++ DGTP DIVLNPLGVPSRMNVGQI ETH Sbjct: 1076 KRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA GLG++I +++ KA + +R L ++ E + D VL +AE Sbjct: 1136 LGWAARGLGERIGNML---KAQAKAAEVRKLLTQIYNESGKVEDLDSLSDSEVLELAENL 1192 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQS----------ILYDGLTGEPFDRPVT 1250 K GVP +TPVFDGA E+ I ML +A +E + L+DG TGE F+RPVT Sbjct: 1193 KKGVPFATPVFDGAHEDEIRRMLDLAYPEEIAKEKGLTASKQQVTLFDGRTGEAFERPVT 1252 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 +G ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YV Sbjct: 1253 LGVMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYV 1312 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 LQEMLT+KSDDV GRT+VYE+IV G + + G PESFNVLVKE+++LG+ IDL+ Sbjct: 1313 LQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLDR 1367 >gi|117918650|ref|YP_867842.1| DNA-directed RNA polymerase subunit beta [Shewanella sp. ANA-3] gi|158512308|sp|A0KRL7|RPOB_SHESA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|117610982|gb|ABK46436.1| DNA-directed RNA polymerase, beta subunit [Shewanella sp. ANA-3] Length = 1345 Score = 1641 bits (4250), Expect = 0.0, Method: Composition-based stats. Identities = 706/1367 (51%), Positives = 968/1367 (70%), Gaps = 25/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D GL+AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKF----TDQDPTGERGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL ++EIL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + D + G ++E+G+++T+ ++ L++ L + + Sbjct: 235 DTLVMTLVPERL-RGETASYDIKDAE-GTVLVEAGRRVTARHIRQLEKTNTTELEVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y A+D ++ +TGE+ + A I + L ++ + I+++ LY++ +++ AYI +TL Sbjct: 293 IVGKYAAQDYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL++ Sbjct: 353 RIDPTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 PDDEGSGVLSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T+DV YLSA+EE IAQAN +D +G EE + CR GE + I Sbjct: 593 RKVVDGVITDDVEYLSAIEEGRYVIAQANIEVDSEGRMVEEQIACRHKGESTFMRASDIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP LK+E P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLKSEKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + AKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVAAKRGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGEPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R+I +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAIEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ + SR +L + I+ PR Sbjct: 953 HIAQARKDLGEEFKILEEGVLSRARNLLLSAG-------------FTEAQIAALPRKDVL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q+E K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 VQVIDDETKQTELEQLAEQHEELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQ+ E HLG Sbjct: 1060 TIQPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE---KISDYDDDSVLRVAEQ 1199 A G+G KI +++ D + G ++ +R+++++V G + I + DD +LR+A Sbjct: 1120 AAAKGIGNKIAAMLEDQREKG-LAEVRNYIKQVYELGDEVQQRVDIDSFTDDELLRLANN 1178 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 K G+PV+TP FDGA E+ I ML +A L SGQ L+DG TG F+RPVTVGY+YMLKL Sbjct: 1179 LKGGIPVATPAFDGAKEKEIKQMLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKL 1238 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1239 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1298 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1299 DDVNGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQE 1345 >gi|85712785|ref|ZP_01043829.1| DNA-directed RNA polymerase beta subunit [Idiomarina baltica OS145] gi|85693425|gb|EAQ31379.1| DNA-directed RNA polymerase beta subunit [Idiomarina baltica OS145] Length = 1342 Score = 1641 bits (4250), Expect = 0.0, Method: Composition-based stats. Identities = 706/1365 (51%), Positives = 981/1365 (71%), Gaps = 26/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q S+ F+ ++ N GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKDFGKRPQVLEVPYLLSMQLDSFKKFIEVD----PEANNGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L++VSY P FDV++C R +TY+ PL++ LRL++FD + G ++ Sbjct: 57 FPIASYSGNAELQYVSYHLGEPAFDVEECQIRGITYSAPLRVKLRLVLFDKEAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG++ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L AL +EEIL F+ + Sbjct: 175 RVIPYRGSWLDFEFDPKDNVFVRIDRRRKLPASIILRALEYTTEEILEMFFETTYFEILK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + D GE V+E G+++T+ ++ L++ +K L + + Sbjct: 235 TKVKMQLVPERL-RGETAKFDIKDS-NGEIVVEKGRRVTARHIRQLEKSEMKELEVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A+D V+ ETGE+ +A D + + + + + ++ I L+V+ +++ Y+ TL Sbjct: 293 MVGKVLAKDYVSKETGEVVAKANDELTLELIANLSEAGVKKIETLFVNDLDHGPYMSETL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F+ LFF ++YDLSTVGR+K N RL Sbjct: 353 RVDSTTNRLEALVEIYRMMRPGEPPTREAAEALFDNLFFSEERYDLSTVGRMKFNRRLGR 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDII ++K L+++RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 EDLSGKNTLTNEDIIDVMKKLIEIRNGLDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+ MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVKERLSLGDLDNTMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSTFARTNEYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R++ +G VT++V YLSA+EE N IAQAN +L++ G ++LV CR E L+ RE++ Sbjct: 593 RRIENGVVTDEVEYLSAIEEGNYVIAQANVALNDQGELVDDLVPCRHKNEFTLMNREQVQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D +P+Q+VSIAAS+IPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E +A Sbjct: 653 FMDVAPQQIVSIAASMIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERTIAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG IVAKR G+V+ VDA RIV++ E ++ P +G+DIY L K++RSNQNTC+NQ+P V Sbjct: 713 SGVTIVAKRGGVVDYVDAARIVVKVNEEEMVPGEAGIDIYNLTKYKRSNQNTCINQKPTV 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 ++G+ V R D++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDS+L+SER+ ED T+I Sbjct: 773 RLGEPVMRGDVLADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILLSERVAQEDRLTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE G++ VGAEV GDILVGK+TPKG Sbjct: 833 HIQELNCVARDTKLGAEEITSDIPNVGESALGKLDEAGVVYVGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GV+GTV+DV++F R G++K++R++++E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVNGTVIDVQVFTRDGVEKDKRAVAIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ + +D +E IL+ IY R +L ++ RS W Sbjct: 953 QLAKVKKDLTEEFKILEDGIYGRARSLLLNNG-------------FDEAKLASMDRSNWL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E + QY+ ++ + +F+ K KI GDD+ PGVL++VKV++A++R Sbjct: 1000 TQGLADESAQEQLEQIAEQYQQTREDFDQKFEMKRRKITQGDDLAPGVLKIVKVYLAVRR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDK+AGRHGNKG++S I+P EDMP ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1060 RIQPGDKLAGRHGNKGVISTIIPNEDMPHDEEGNPVDIVLNPLGVPSRMNIGQILETHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ KA ++ LR F+++V G G ++++ DD VLR+A Sbjct: 1120 MAARGIGTKIDKML---KAQRAMAELRDFIQQVYDLGEGRQKVDLAEFSDDEVLRLAGNL 1176 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+P +TP FDGA EE I ++L++AD+ ESGQ L DG TGE F+R VTVGY+YMLKLN Sbjct: 1177 RAGLPTATPAFDGAIEEEIKALLKLADIPESGQIPLIDGRTGERFERDVTVGYMYMLKLN 1236 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV GRT++Y++IV N E G PESFNVL+KE+++LG++I+LE Sbjct: 1297 DVNGRTKMYKNIVDNNLQMEAGMPESFNVLLKEIRSLGINIELEE 1341 >gi|239993452|ref|ZP_04713976.1| DNA-directed RNA polymerase subunit beta [Alteromonas macleodii ATCC 27126] Length = 1342 Score = 1641 bits (4250), Expect = 0.0, Method: Composition-based stats. Identities = 721/1366 (52%), Positives = 981/1366 (71%), Gaps = 26/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P++++IP L+ +Q S+ F+ ++ GL+AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIEIDADAQ----YGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG++ L++VSY P FDV +C R +T++ PL++ LRL++FD D G ++ Sbjct: 57 FPIKSYSGSSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDKDAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L AL M SEEIL TF+ K+ Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALEMTSEEILDTFFDKVSVRIDK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + D + G + ++D + G V+E+G+++++ ++L++ G+ L + +D Sbjct: 235 DKLMMEVVP-DRLRGETAAFDIIDGE-GNVVVETGRRISARHTRALEKAGLTELEVPADY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G A VN +TGE+ + A D + ++L + + I++ LY++ +++ +YI +TL Sbjct: 293 LIGRVYAATYVNEDTGEVIVSANDELTLENLAALSQAGIKEFETLYINELDHGSYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +R +AL++IYR+MRPG+ T AE++F+ LFF ++YDLS+VGR+K N RL Sbjct: 353 RIDSSTNRLEALVEIYRMMRPGEPPTKDAAETLFDNLFFSDERYDLSSVGRMKFNRRLGR 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDII+++K L+ +R+GK +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 EELIGAGTLDKEDIISVMKQLIMIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N +GF+ETP+ Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGLNIGLINSLASFARTNDFGFLETPF 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R++ DG VT+++ YLSA+EE IAQAN +L E G ++L+ CR GE L+P+E I Sbjct: 593 RRIVDGVVTDEIDYLSAIEEGQFAIAQANIALTEAGELVDDLIPCRHRGETTLMPKEDIK 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q+VSIAAS+IPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 653 YMDVSPQQIVSIAASIIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERTIAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ+P Sbjct: 713 SGVTVVAKRGGVVDYVDASRIVIKVDEDEMLPGEAGIDIYNLTKYTRSNQNTCINQKPTC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD + D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGDPIVAGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEI+ DIPNV E L +DE G++ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGPEEISSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V GTV+DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ + +D DE IL I++R L + PR +W+ Sbjct: 953 QLRQVKKDLTDEFEILADGIFARAQTALLRAGV-------------DQAKLDSLPREKWF 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + A+ E Q ++ + Q+ K + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 EIALNSEDAQLELDQIADQHAEIKLDFDKKFEGKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I P EDMP+ +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1060 HIQPGDKMAGRHGNKGVISTIQPVEDMPYDANGTPVDIVLNPLGVPSRMNIGQILETHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A GLG KI +I K +++ LR FL+KV G I + D V R+AE Sbjct: 1120 MAAHGLGVKIDRMI---KEQRELAELRDFLKKVYELGENHQEVDIDSFTDHEVRRLAENL 1176 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVPV+TPVFDGA E I ML++AD+ ESGQ L+DG TG F+RPVTVGY+YMLKLN Sbjct: 1177 RKGVPVATPVFDGARESEIKEMLKLADIPESGQIALFDGRTGREFERPVTVGYMYMLKLN 1236 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1297 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEK 1342 >gi|237809522|ref|YP_002893962.1| DNA-directed RNA polymerase subunit beta [Tolumonas auensis DSM 9187] gi|259494195|sp|C4LBV2|RPOB_TOLAT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|237501783|gb|ACQ94376.1| DNA-directed RNA polymerase, beta subunit [Tolumonas auensis DSM 9187] Length = 1342 Score = 1641 bits (4249), Expect = 0.0, Method: Composition-based stats. Identities = 706/1361 (51%), Positives = 962/1361 (70%), Gaps = 22/1361 (1%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 + R+RK FGK ++++ P L+ +Q S+ FL + GL+AAF+SVFPI Sbjct: 4 SYTEKKRIRKDFGKRDQVLETPYLLSIQLDSFKQFLDADPEGA----YGLEAAFRSVFPI 59 Query: 66 TAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDI 125 T++SG A L++VSY P FDV +C R +TY+ PL++ LRL++FD + G ++K+I Sbjct: 60 TSYSGTAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVLFDKEAAAG--TVKEI 117 Query: 126 KEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRII 185 KEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY R+I Sbjct: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVI 177 Query: 186 PDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFW 245 P +G W+D EFD+KD + VRIDRRRK+P T L AL +EEIL+TF+ I + + Sbjct: 178 PYRGSWLDFEFDAKDNLFVRIDRRRKLPATIILRALEFTTEEILTTFFETIKFEIKDGKV 237 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCG 305 L L G + +V G+ V+E G+++T+ ++ L++ G+ + + + + G Sbjct: 238 LMELVPERL-RGETATFDIV--AGGDVVVEKGRRITARHIRQLEKAGISQIEVPVEYVVG 294 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 A D VN +TGE+ I A + +++ + + + +L+ + +++ +YI TL D Sbjct: 295 KISARDYVNPQTGEVMINANTALSLEAIANLSQAGFKQFEVLFTNELDHGSYISETLRID 354 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 + +R +AL++IYR+MRPG+ T AE +F LFF +D+YDLSTVGR+K N RL Sbjct: 355 SSTNRLEALVEIYRMMRPGEPPTKDAAEQLFENLFFSADRYDLSTVGRMKFNSRLARPDH 414 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 + ++DI+ ++K L+ +RNGK +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ER+ Sbjct: 415 IGSGILSQDDIVDVMKQLIAIRNGKDDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 +KER+S D+D++ PQDLINAKP+ +AV EFF SSQLSQ + N LS ITH RR+SALG Sbjct: 475 VKERLSLGDLDAIQPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++R N YGF+ETPYRKV Sbjct: 535 PGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLAVYSRTNEYGFLETPYRKV 594 Query: 606 CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 DG +T++V YLSA+EE N IAQAN+++D D +EL+ CR GE + E+I ++D Sbjct: 595 IDGVITDEVDYLSAIEEGNFVIAQANANVDADARLKDELIPCRHKGESTFMNAEQIQYMD 654 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA SG Sbjct: 655 VSPQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 Query: 726 AIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 +VAKR G ++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V VG Sbjct: 715 TVVAKRGGTIDYVDASRIVVKVNEDELLPGEAGIDIYNLTKYTRSNQNTCINQRPCVSVG 774 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 + V D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED T+IHI+ Sbjct: 775 EPVMLGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRLTTIHIQ 834 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKGE+ Sbjct: 835 ELSCIARDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQ 894 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +TPEEKLLRAIFGEKA DV+D+SLRVP+GV GTV+DV++F R G++K++R+ VE Q+ Sbjct: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVYGTVIDVQVFTRDGVEKDKRAKEVEDMQLR 954 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFA 1025 +D +E IL+ I+ R +L D +S+ R +W + + Sbjct: 955 DAKKDLTEEFKILEDGIFGRARSLLIANG-------------FGEDRLSKLDRKRWLEQS 1001 Query: 1026 VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 + DE Q +E + Q+ K + +F+ K +KI GDD+ PGVL++VKV++A+KR IQ Sbjct: 1002 LDDEGKQVELEQIAEQHIALKEEFDRKFEAKRQKIIQGDDLAPGVLKIVKVYLAVKRRIQ 1061 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG++S+I P EDMP+ +G PVDIVLNPLGVPSRMN+GQI E HLG A Sbjct: 1062 PGDKMAGRHGNKGVISKICPVEDMPYDDEGNPVDIVLNPLGVPSRMNIGQILEVHLGLAA 1121 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 G+G+KI ++ + + ++ + + G+ I+ DD V + + + G+P Sbjct: 1122 KGIGEKIDRMVKEQRELAELREFLQRVYDLGGSDQQQIDIATLSDDDVRTLVQNLRKGLP 1181 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 V+TPVFDGA E I +L++AD ESGQ L+DG TG PF+R VTVGY+YMLKLNH+V D Sbjct: 1182 VATPVFDGAKESEIKELLKLADKPESGQITLFDGRTGMPFERVVTVGYMYMLKLNHLVDD 1241 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GR Sbjct: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 T++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1302 TKMYKNIVDGDHRMEPGIPESFNVLLKEIRSLGINIELEEE 1342 >gi|330831427|ref|YP_004394379.1| DNA-directed RNA polymerase subunit beta [Aeromonas veronii B565] gi|328806563|gb|AEB51762.1| DNA-directed RNA polymerase subunit beta [Aeromonas veronii B565] Length = 1342 Score = 1641 bits (4249), Expect = 0.0, Method: Composition-based stats. Identities = 696/1364 (51%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK +++D P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEAD----PEGEYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPIT++SG+A L++VSY P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPITSYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD + VRIDRRRK+P + L AL SE+IL+TF+ I + + Sbjct: 175 RVIPYRGSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFTSEQILATFFETIGFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + +V G V+E+G+++T+ ++ L++ V + + + Sbjct: 235 GKLMMDLVPERL-RGETATFDIV--ANGAVVVETGRRVTARHIRQLEKDAVTQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D + +TGE+ + A + +++ + + + +L+ + +++ AY+ TL Sbjct: 292 VVGKVAAKDYAHPQTGEMVVTANQALSLEAIANLSQAGFKHFEVLFTNELDHGAYMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +R +AL++IYR+MRPG+ T AE +F LFF +++YDLSTVGR+K N RL Sbjct: 352 RVDSSSNRLEALVEIYRMMRPGEPPTREAAEQLFENLFFSAERYDLSTVGRMKFNRRLGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + K+DI+ ++K L+D+RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDETGAGVLTKDDIVDVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ ++R N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYSRTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T++V YLSA+EE IAQAN++ EDG +EL+ CR GE + ++I Sbjct: 592 RKVIDGVITDEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHKGESTFMNADQIQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSPQQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTVVAKRGGVIDYVDASRIVLKVNEDELMPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L++ER+V ED T+I Sbjct: 772 MLGEPVMAGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVNERVVQEDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 832 HIQELACISRDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GV GTVVDV++F R G++K++R+ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGVEKDKRAKEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ I+ R +L S D +++ RS+W+ Sbjct: 952 QLKEAKKDLTEEFKILEDGIFGRSRNLLLAAG-------------YSEDRLNKLDRSKWF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + A++DE Q +E + Q+ K+ + +F+NK KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELAIEDEGKQTELEQIAEQHVELKAEFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKICPVEDMPHDEFGRPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI ++ + + ++ + + + I++ DD V + + Sbjct: 1119 LAAKGIGEKIDRMVKEQRELHEMRNFLQQVYDLGEKDTQQVNIAELSDDDVRTLVGNLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+PV+TPVFDGA E I ++L++ADL ESGQ L+DG TG F+R VTVGY+YMLKLNH+ Sbjct: 1179 GLPVATPVFDGAKEREIKALLKLADLPESGQIDLFDGRTGNRFERKVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+L+ Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELDEE 1342 >gi|269103665|ref|ZP_06156362.1| DNA-directed RNA polymerase beta subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268163563|gb|EEZ42059.1| DNA-directed RNA polymerase beta subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 1341 Score = 1641 bits (4249), Expect = 0.0, Method: Composition-based stats. Identities = 703/1366 (51%), Positives = 964/1366 (70%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q S+ F+ + + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDAPYLLSIQLDSFQKFIEQD----PEGHYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL+++D D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVMYDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L ALG +++IL F+ K+ + +G Sbjct: 175 RVIPYRGSWLDFEFDPKDSVFVRIDRRRKLPASIILRALGYTTDQILDMFFEKVKFEVQG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G +E G+++T+ ++ L + GV + + + Sbjct: 235 KSLVMELVP-DRLRGETASFDIE--ANGTVYVEKGRRITARHIRQLAKDGVDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ A + +SL + + + I +L+ + +++ Y+ +TL Sbjct: 292 IVGKVAAKDYVNEATGELIAAANQELSLESLALLSQAGHKSIEVLFTNDLDHGPYMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE +F LFF ++YDLS VGR+K N L Sbjct: 352 RIDSTTDRLSALVEIYRMMRPGEPPTREAAEQLFESLFFSEERYDLSAVGRMKFNSSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + +DII +++ L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DETTGPGTLDNQDIIDVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSVFARCNPYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKV+ ++ YLSA+EE IAQAN++L+EDGSF +EL+ R G+ L PR+ + Sbjct: 592 RKVVDGKVSEEIEYLSAIEEGQYVIAQANAALNEDGSFADELITARQKGDSGLHPRDHVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVS+AASLIPFLE++D+NR LMG NMQRQAVP ++A+ P VGTG+E + Sbjct: 652 YMDVATNQVVSVAASLIPFLEHNDANRALMGANMQRQAVPTIRADKPLVGTGIERQIGVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ + +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGQVQFVDASRIVIKVNDDELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED T+I Sbjct: 772 MVGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP V+GTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPGSVTGTVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S D I+ R + + Sbjct: 952 QLKEAKKDLTEEFQILEGGLLARVRTLLLASG-------------YSEDKIASMDREKLF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE +Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 AQTLDDEALQNQLEQLAEQYDELKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G VDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQTVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K ++ +R FL++V G I+ D+ VL +A+ Sbjct: 1119 LAAKGIGDKINEMM---KQQQELHKIREFLQRVYDLGDTRQKVDIALLSDEEVLTLAQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E +I +L++ DL SGQ L+DG TG PF+RPVTVGY+YMLKLN Sbjct: 1176 RKGLPIATPVFDGAPEASIKELLQLGDLPSSGQLQLFDGRTGNPFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|182676560|sp|A9KD39|RPOB_COXBN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1375 Score = 1640 bits (4248), Expect = 0.0, Method: Composition-based stats. Identities = 716/1370 (52%), Positives = 984/1370 (71%), Gaps = 10/1370 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNP-EIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + + + R R GK EI+ P L+E Q SY FL +IA ++R + GL AAFK Sbjct: 11 SATISYPEKRRARVNLGKREVEILKTPYLLETQIESYRKFLQKDIAAEKREDNGLHAAFK 70 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPK--FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 SVFPIT++SG A+LE+V Y FDV++C R LTYA PLK+ +RL+++D + G Sbjct: 71 SVFPITSYSGYAVLEYVGYSLGGESTLFDVEECKLRGLTYAAPLKVNMRLVIYDKEAPAG 130 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 K+IKDIKEQ +YMG++PLMT+ G+ VI G +R+VVSQLHRSPG+ F+HDKG+ SGKL Sbjct: 131 KKAIKDIKEQEVYMGEIPLMTETGSLVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKL 190 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 LY+ R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG D+E+IL FY + Sbjct: 191 LYSARVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPATVILRALGYDTEQILDMFYKTNHF 250 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + L L G + D G+ ++E+ +++++ ++ +++ + L + Sbjct: 251 HLNQETVTLDLIPQRL-RGELAVVEIKDKK-GKVIVEANRRISARHIRLIEKAEINKLEL 308 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G + + I++ ETGEI A + I + L+ + ++ + LY++ + Y+ Sbjct: 309 PDDYLYGKVIGKTIIDKETGEIIAHANEEITAELLKNLRATKTASLDTLYINEIECGLYV 368 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 +TL D ++ +AL++IYR+MRPG+ T AES+F LFF ++Y LS VGR+K N Sbjct: 369 SDTLRLDTTTNQLEALVEIYRIMRPGEPPTKEAAESLFENLFFSPERYSLSAVGRMKFNR 428 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R+ + + KEDI+ ++++LVD+R+GKG +DDID+LGNRR+RSVGEM +NQ+R+G Sbjct: 429 RVGRKELTGLDVLSKEDIVDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFRVG 488 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L+R+ER++K+R+S D++++MPQDL+NAKPV +A+ EFF SSQLSQ + N LS ITH Sbjct: 489 LVRVERAVKDRLSLADVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHK 548 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL FAR N YGF+ Sbjct: 549 RRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFL 608 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV D VT++ YLSA+EE + YIAQAN+++DE G ++L+ CR GE L Sbjct: 609 ETPYRKVVDRVVTDETEYLSAIEEGDYYIAQANTNVDEKGRLVDDLISCRYKGEFTLTTP 668 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +KI+++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP ++ E P VGTGME Sbjct: 669 DKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLVGTGMERT 728 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VA SG ++AKR+G+++ VDA RIV+R + D GVDIY L KF RSNQNTC+N Sbjct: 729 VAVDSGVTVIAKRSGVIDSVDASRIVVRVDRKETEDDDDIGVDIYNLTKFTRSNQNTCIN 788 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q P+V+VGD+V++ D++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V ED Sbjct: 789 QHPIVEVGDKVQKGDVLADGPSTDIGELALGQNLLVAFMPWNGYNFEDSILISERLVEED 848 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 FT+IHI+EF +ARDTKLGPEEIT DIPNV E L +DE GI+ +GAEVN GDILVGK Sbjct: 849 RFTTIHIQEFTCVARDTKLGPEEITSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGK 908 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G++GTV+ VRIF R G+ K+ER++ Sbjct: 909 VTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVTPGITGTVIGVRIFTREGVKKDERTL 968 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 +E+ ++ + +D +DE + + ++ L ++L G+ A GP K T ++ +++ P Sbjct: 969 EIEKAELSKVEKDLNDELRVREDALFENLEKLLTGRVAAGGPNKLAKGTKITKSYLADLP 1028 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 R +W++ +QD+ + +E+ ++ + + + K+ +K+ G D+ PGV+++VKV+ Sbjct: 1029 RQKWFEIRLQDDAATKRLEASHEHFKELRETRDAKLKDSRQKLTQGGDLAPGVIKIVKVY 1088 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR IQ GDKMAGRHGNKG++S I+P EDMP+L+DGTPVDIVLNPLGVPSRMN+GQ+ Sbjct: 1089 LAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVL 1148 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE-KISDYDDDSVLRV 1196 ETHLGWA GLGKKI +I + D LR L+ + + +D ++ + Sbjct: 1149 ETHLGWATKGLGKKIGEMI---EKGADAKELRKSLKPIYDLSKTQRFDLEALEDPEIVTL 1205 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A+ + GVP+S+PVFDGA EE I +L+MADL SGQ+ LYDG TG+ FDR VTVGY+YM Sbjct: 1206 AKNLRKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYM 1265 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1266 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1325 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +KSDDV GRTR+Y++IV G+ + G PESFNVLVKE+++L + I LEN Sbjct: 1326 VKSDDVAGRTRMYKNIVDGDHRMDAGMPESFNVLVKEIRSLAIDIGLEND 1375 >gi|149925884|ref|ZP_01914147.1| DNA-directed RNA polymerase, beta subunit [Limnobacter sp. MED105] gi|149825172|gb|EDM84383.1| DNA-directed RNA polymerase, beta subunit [Limnobacter sp. MED105] Length = 1369 Score = 1640 bits (4248), Expect = 0.0, Method: Composition-based stats. Identities = 701/1376 (50%), Positives = 971/1376 (70%), Gaps = 19/1376 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 R+RK F K P ++D+P L+ Q SY FL + + ++R +GLQAAF+SV Sbjct: 1 MSYSATEKKRIRKSFAKRPPVLDVPYLLTTQLDSYTDFLQLGLPVEKRAEQGLQAAFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FDV +C R LT+ PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVQYALGEPAFDVKECQQRGLTFCSPLRARVRLVLLDR--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG+LPLMT++G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGELPLMTQNGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+GM++E+ILSTF+ + + Sbjct: 179 RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGMNNEQILSTFFEFDQFEIKS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L + L G +VD +G+ +++ K++ + ++ ++ G+K + + D Sbjct: 239 EGASMDLVTSRL-KGEVAKFDIVD-KSGKVLVQKDKRINAKHIRDIEAAGLKKISVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ TGE+ A D I E+ + +I + ++ + ++ + +++ AYI TL Sbjct: 297 LIGRTLAKNIVDASTGEVVASANDEITEEIMGKIRDAGVKVVETIFTNELDHGAYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D+ A + IYR+MRPG+ T E +FN LF+ D YDLS VGR+K N R+ Sbjct: 357 RTDETADQTAARVAIYRMMRPGEPPTEEAVEMLFNRLFYSEDSYDLSRVGRMKFNRRVGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ +DI+A+IKILVDLRNG G IDDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 417 PEVEGAMVLQDDDILAVIKILVDLRNGNGEIDDIDHLGNRRVRCVGELAENQFRAGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLGQAEAENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++S+ FAR+N YGF+ETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSMAMFARLNEYGFLETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV G V++++VYLSA+EE IAQAN+ +DE +LV CR AGE L+ ++ Sbjct: 597 RKVEGGVVSDEIVYLSAIEEGRFVIAQANAEIDEKKRLVGDLVSCRVAGEFELMDPSGVE 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E PF GTG+E VA Sbjct: 657 LMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPFAGTGIERTVAVD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG IVA G+V+ VDA RIVIR + +++ + GVDIY L K+ RSNQNT +NQRP+V Sbjct: 717 SGTVIVADHGGVVDYVDANRIVIRVNDNEVESGSVGVDIYNLTKYTRSNQNTNINQRPIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD + + D+IADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +TSI Sbjct: 777 NKGDIIAKGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLG EEITRDI N+SE L +DE GI+ +GAEV GD++VGK+TPKG Sbjct: 837 HIEELSVVARDTKLGSEEITRDISNLSEAQLSRLDESGIVYIGAEVQAGDVMVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV++F R GI +++R+ S+ + Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDD 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + +SR+ L G+ A GP K T ++++ + E W+ Sbjct: 957 ELKRYRLDLNDQMRIVEADAFSRIERFLVGKVANGGPAKLAKGTKITTEYLKEVDHHHWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +E+ +E+LK E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 1017 DIRLAEEEAAGQLETLKKSIEDKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P ED+P + DG PVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1077 RLQPGDKMAGRHGNKGVVSKIVPVEDLPHMADGRPVDIVLNPLGVPSRMNVGQILETHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA G+G +I ++ + ++ LR +L KV T + D ++ + + Sbjct: 1137 WAAKGIGDRINEML---REQNAVARLREYLHKVYNGTGTTVDLDSLTDIEIINMGKNLTK 1193 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDES------G------QSILYDGLTGEPFDRPVT 1250 G+P +TPVFDGA+EE I MLR+A DE G Q LYDG TG+ FDR VT Sbjct: 1194 GMPFATPVFDGANEEDILEMLRLAYPDEDPRMQALGFNESKTQVTLYDGRTGDAFDRKVT 1253 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VGY ++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YV Sbjct: 1254 VGYKHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYV 1313 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 LQEMLT+KSDDV GRT+VYE++V G+ T + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1314 LQEMLTVKSDDVNGRTKVYENLVKGDHTIDAGMPESFNVLVKEIRSLGIDIDLDRN 1369 >gi|303253142|ref|ZP_07339291.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302647824|gb|EFL78031.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 1342 Score = 1640 bits (4248), Expect = 0.0, Method: Composition-based stats. Identities = 709/1367 (51%), Positives = 974/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q SY+ F+ + +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSYEKFIQRDSD----GQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G+ L++VSYE P FDV +C R TYA PL++ LRL+ FD + G ++ Sbjct: 57 FPIVSNNGSTELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEILS F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILSMFFDKVNFEIQD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +++L++ +K + + + Sbjct: 235 NKLLMTLVPERL-RGETAAFDIE--ANGKVYVERGRRITARHIRTLEKDEIKQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A I + L ++ + ++I +L+ + +++ YI TL Sbjct: 292 IVGKVAAKDYVDLSTGELVCPANMEISMEMLAKLSQAGYKEIEVLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ +FF +D+YDLS VGR+K N LNL Sbjct: 352 RVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSLNL 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DI ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEGVGSGILSNDDITGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D + PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 532 ALGPGGLTRERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT D+ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E I Sbjct: 592 RKVVNGQVTEDIEYLSAIEEGNYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG AIVAKR GIV++VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAIVAKRGGIVQRVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VNLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ +++R+ +L S + + R +W Sbjct: 952 MQLKEAKKDLTEELEILEAGLFTRVRNLLIEGGV-------------SEAELDKVAREKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A++ Sbjct: 999 LEQTLDDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVR 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K ++ LR +++K G GS + +S + D+ V+R+AE Sbjct: 1119 GLAAKGIGDQINAMI---KQQQSVAKLREYIQKAYDLGHGSQSVDLSTFTDEEVMRLAEN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E I +L + L SGQ L+DG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G E G PESFNVL+KE++ALG+ ++L+ Sbjct: 1296 DDVNGRTKMYKNIVDGTHQMEPGMPESFNVLLKEIRALGIDMELDEE 1342 >gi|224713636|gb|ACN62088.1| DNA-directed RNA polymerase beta subunit [Acinetobacter baumannii] Length = 1362 Score = 1640 bits (4247), Expect = 0.0, Method: Composition-based stats. Identities = 716/1374 (52%), Positives = 982/1374 (71%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG ++E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D + G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDITDNE-GKVIVEQGKRINARHVRQMEAAGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + GE+ A ++ + + ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYDRITAEDITLLD-GEVIA-ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +DR++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADLTRDREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+DV YLSA+EE IAQA+S++D+DG+ TEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G++E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L GQ + G K+ LS DL+S Sbjct: 953 RALAIEKAQLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGG-GSTKRGDKLSEDLLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L +A ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALAGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|58583214|ref|YP_202230.1| DNA-directed RNA polymerase subunit beta [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625051|ref|YP_452423.1| DNA-directed RNA polymerase subunit beta [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575481|ref|YP_001912410.1| DNA-directed RNA polymerase subunit beta [Xanthomonas oryzae pv. oryzae PXO99A] gi|75434343|sp|Q5GWS6|RPOB_XANOR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|109914409|sp|Q2NZX8|RPOB_XANOM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699460|sp|B2SQQ1|RPOB_XANOP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|58427808|gb|AAW76845.1| RNA polymerase beta subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368991|dbj|BAE70149.1| RNA polymerase beta subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519933|gb|ACD57878.1| DNA-directed RNA polymerase, beta subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1383 Score = 1640 bits (4247), Expect = 0.0, Method: Composition-based stats. Identities = 706/1389 (50%), Positives = 966/1389 (69%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ +R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVESTKRKDLGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT +GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG ++EE+L+ F+ + D Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLAEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ GV L + D L Sbjct: 241 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+G TGE+ A D I E L + + + L+V+ ++ Y+ NTL Sbjct: 299 VGRILSHDVVDGSTGELLANANDEISEDQLTAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A +IK+L ++RNG+G +DDID+LGN Sbjct: 419 DVLGESVLYDKKYFAERNDEESKRLVAEHTDTSDILEVIKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A R G++EQ+DA RIV++ E + +GVD Sbjct: 719 PTLRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A G Sbjct: 959 DVQVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGG-A 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK ++ + +S W+Q ++DE +E + Q + + E RF +K KI Sbjct: 1018 NLKKGDSVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G VDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGESVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI+ ++ +A +S LR FL+ + + Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRML---EAQAAVSELRKFLDDIYNHDN 1194 Query: 1181 HTE----KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + D+ +L + + GVP++TPVFDGA E I ML +ADL +SGQ+ L Sbjct: 1195 AINAQRVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADLPQSGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLEN 1365 L + ++LE Sbjct: 1375 LAIHMELEE 1383 >gi|209364192|ref|YP_001425190.2| DNA-directed RNA polymerase subunit beta [Coxiella burnetii Dugway 5J108-111] gi|207082125|gb|ABS77649.2| DNA-directed RNA polymerase beta chain [Coxiella burnetii Dugway 5J108-111] Length = 1377 Score = 1640 bits (4247), Expect = 0.0, Method: Composition-based stats. Identities = 716/1370 (52%), Positives = 984/1370 (71%), Gaps = 10/1370 (0%) Query: 2 AKGVVFNGLGRVRKFFGKNP-EIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + + + R R GK EI+ P L+E Q SY FL +IA ++R + GL AAFK Sbjct: 13 SATISYPEKRRARVNLGKREVEILKTPYLLETQIESYRKFLQKDIAAEKREDNGLHAAFK 72 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPK--FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 SVFPIT++SG A+LE+V Y FDV++C R LTYA PLK+ +RL+++D + G Sbjct: 73 SVFPITSYSGYAVLEYVGYSLGGESTLFDVEECKLRGLTYAAPLKVNMRLVIYDKEAPAG 132 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 K+IKDIKEQ +YMG++PLMT+ G+ VI G +R+VVSQLHRSPG+ F+HDKG+ SGKL Sbjct: 133 KKAIKDIKEQEVYMGEIPLMTETGSLVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKL 192 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 LY+ R+IP +G W+D EFD KD + VRIDRRRK+P T L ALG D+E+IL FY + Sbjct: 193 LYSARVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPATVILRALGYDTEQILDMFYKTNHF 252 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + L L G + D G+ ++E+ +++++ ++ +++ + L + Sbjct: 253 HLNQETVTLDLIPQRL-RGELAVVEIKDKK-GKVIVEANRRISARHIRLIEKAEINKLEL 310 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G + + I++ ETGEI A + I + L+ + ++ + LY++ + Y+ Sbjct: 311 PDDYLYGKVIGKTIIDKETGEIIAHANEEITAELLKNLRATKTASLDTLYINEIECGLYV 370 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 +TL D ++ +AL++IYR+MRPG+ T AES+F LFF ++Y LS VGR+K N Sbjct: 371 SDTLRLDTTTNQLEALVEIYRIMRPGEPPTKEAAESLFENLFFSPERYSLSAVGRMKFNR 430 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R+ + + KEDI+ ++++LVD+R+GKG +DDID+LGNRR+RSVGEM +NQ+R+G Sbjct: 431 RVGRKELTGLDVLSKEDIVDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFRVG 490 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L+R+ER++K+R+S D++++MPQDL+NAKPV +A+ EFF SSQLSQ + N LS ITH Sbjct: 491 LVRVERAVKDRLSLADVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHK 550 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL FAR N YGF+ Sbjct: 551 RRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFL 610 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYRKV D VT++ YLSA+EE + YIAQAN+++DE G ++L+ CR GE L Sbjct: 611 ETPYRKVVDRVVTDETEYLSAIEEGDYYIAQANTNVDEKGRLVDDLISCRYKGEFTLTTP 670 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +KI+++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP ++ E P VGTGME Sbjct: 671 DKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLVGTGMERT 730 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VA SG ++AKR+G+++ VDA RIV+R + D GVDIY L KF RSNQNTC+N Sbjct: 731 VAVDSGVTVIAKRSGVIDSVDASRIVVRVDRKETEDDDDIGVDIYNLTKFTRSNQNTCIN 790 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q P+V+VGD+V++ D++ADGPSTD+G+LALG+N+LVAFMPW+GYNFEDS+LISER+V ED Sbjct: 791 QHPIVEVGDKVQKGDVLADGPSTDIGELALGQNLLVAFMPWNGYNFEDSILISERLVEED 850 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 FT+IHI+EF +ARDTKLGPEEIT DIPNV E L +DE GI+ +GAEVN GDILVGK Sbjct: 851 RFTTIHIQEFTCVARDTKLGPEEITSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGK 910 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G++GTV+ VRIF R G+ K+ER++ Sbjct: 911 VTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVTPGITGTVIGVRIFTREGVKKDERTL 970 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 +E+ ++ + +D +DE + + ++ L ++L G+ A GP K T ++ +++ P Sbjct: 971 EIEKAELSKVEKDLNDELRVREDALFENLEKLLTGRVAAGGPNKLAKGTKITKSYLADLP 1030 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 R +W++ +QD+ + +E+ ++ + + + K+ +K+ G D+ PGV+++VKV+ Sbjct: 1031 RQKWFEIRLQDDAATKRLEASHEHFKELRETRDAKLKDSRQKLTQGGDLAPGVIKIVKVY 1090 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR IQ GDKMAGRHGNKG++S I+P EDMP+L+DGTPVDIVLNPLGVPSRMN+GQ+ Sbjct: 1091 LAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVL 1150 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE-KISDYDDDSVLRV 1196 ETHLGWA GLGKKI +I + D LR L+ + + +D ++ + Sbjct: 1151 ETHLGWATKGLGKKIGEMI---EKGADAKELRKSLKPIYDLSKTQRFDLEALEDPEIVTL 1207 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A+ + GVP+S+PVFDGA EE I +L+MADL SGQ+ LYDG TG+ FDR VTVGY+YM Sbjct: 1208 AKNLRKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYM 1267 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT Sbjct: 1268 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1327 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +KSDDV GRTR+Y++IV G+ + G PESFNVLVKE+++L + I LEN Sbjct: 1328 VKSDDVAGRTRMYKNIVDGDHRMDAGMPESFNVLVKEIRSLAIDIGLEND 1377 >gi|332108093|gb|EGJ09317.1| DNA-directed RNA polymerase subunit beta [Rubrivivax benzoatilyticus JA2] Length = 1373 Score = 1640 bits (4247), Expect = 0.0, Method: Composition-based stats. Identities = 703/1379 (50%), Positives = 976/1379 (70%), Gaps = 19/1379 (1%) Query: 1 MAKG--VVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAA 58 MA+ F R+RK FGK ++ +P L+ +Q SY FL ++ P +R EGLQAA Sbjct: 1 MAQATPYTFTERKRIRKSFGKRESVLKVPYLLTMQSDSYVAFLQKDVPPQQRKPEGLQAA 60 Query: 59 FKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 F S FPI + +G ++F+ Y P FDV +C R LT+A ++ L++I++D E Sbjct: 61 FLSAFPIVSHNGFVEMKFLEYNIAKPPFDVRECQQRGLTFAAAVRAKLQMIIYDR-ESHP 119 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 AK +K+IKEQ +YMG++PLMT G+F++ G +R++VSQLHRSPG+ F+HDKG+ SGKL Sbjct: 120 AKVVKEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKL 179 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 L++ RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G++ E+ILS F+ + Sbjct: 180 LFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILSHFFVFDNF 239 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 L G L D G ++E K++T+ ++ L++ G F+ + Sbjct: 240 RLMDSGAQMEFVPERL-KGEIARFDLTD-KNGAVIVEKDKRITARHVRQLEQSGTTFVSV 297 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G +A ++V+ +TGEI +A D + E L+++ + I+DI L+ + +N AYI Sbjct: 298 PEDFLVGRVIARNMVDPDTGEIVAKANDEVTESLLKKLRSAGIKDIQCLFTNELNQGAYI 357 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 TL +D+ D+ A + IYR+MRPG+ T E++F+ LF+ D YDLS VGR+K N Sbjct: 358 SQTLASDETADQLAARVAIYRMMRPGEPPTEDAVEALFHRLFYSEDTYDLSRVGRMKFNA 417 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R+ D PD + EDI+ ++KILVDLRNG G +DDID+LGNRRVR VGE+ +NQYR G Sbjct: 418 RVGRDVPDGKMTLSNEDILDVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRSG 477 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L R+E+++KER+ + +++MP DLIN+KP+ +A+ EFF +SQLSQ + N LS ITH Sbjct: 478 LARIEKAVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHK 537 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A++N YGF+ Sbjct: 538 RRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFL 597 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYR+V DGKVT+ + YLSA+EE IAQAN++LD +G +ELV R GE +L+ Sbjct: 598 ETPYRRVVDGKVTDQIDYLSAIEEGKYVIAQANATLDGEGRLIDELVSARENGESVLLSP 657 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 E++ ++D +P Q+VS+AASL+PFLE+DD+NR LMG NMQRQAVP L+ E VGTG+E V Sbjct: 658 ERVQYMDVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPTLRPEKALVGTGVERV 717 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG + A+R GIV+ VD RIVIR + + GVDIY L+K+QRSNQNT ++Q Sbjct: 718 AAVDSGTVVTARRGGIVDYVDTNRIVIRVNDDETVAGEVGVDIYNLIKYQRSNQNTNIHQ 777 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V+ GD V D++ADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISER+V++D Sbjct: 778 RPIVRRGDHVGAGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVADDR 837 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TSIHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GI+ +GAEVNPGD+LVGK+ Sbjct: 838 YTSIHIEELVVMARDTKLGSEEITRDIPNLSEQQLARLDESGIVYIGAEVNPGDVLVGKV 897 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G SGTV+DV++F R GI +++R+ Sbjct: 898 TPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGTSGTVIDVQVFTREGIQRDKRAQQ 957 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 + ++++ D +D+ I++ + + R+ ++L G+ A GP+ K T ++ + ++ + Sbjct: 958 IIDDELKRFRLDLNDQLRIVEADAFDRIEKLLAGKVANGGPQKIAKGTTITKEYLATVEK 1017 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 W+ +++V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV++ Sbjct: 1018 YHWFDIRPSEDEVANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYL 1077 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR +Q GDKMAGRHGNKG+VS+I+ EDMP++ DGTP DIVLNPLGVPSRMNVGQ+ E Sbjct: 1078 AVKRRLQPGDKMAGRHGNKGVVSKIVAVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLE 1137 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVA 1197 HLGWA G+G +I ++ + + LR FL+++ +G TE + D DD ++ +A Sbjct: 1138 VHLGWAGKGIGHRIGDML---QQQARAAELREFLDELYNQSGGKTESLQDLSDDEIVEMA 1194 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDE----------SGQSILYDGLTGEPFDR 1247 + + GVP +TPVFDGA EE I ML++A DE Q+ L+DG TGE F+R Sbjct: 1195 KNLQHGVPFATPVFDGAHEEEIRGMLKLAYPDELAARKGLTATRTQATLHDGRTGEAFER 1254 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 PVTVGY+++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1255 PVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1314 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +Y+LQEMLT+KSDDV GRT+VYE+IV G + E G PESFNVLVKE+++LG+ I+LE Sbjct: 1315 SYILQEMLTVKSDDVNGRTKVYENIVKGEHSIEAGMPESFNVLVKEIRSLGIDIELERD 1373 >gi|317401596|gb|EFV82223.1| DNA-directed RNA polymerase subunit beta [Achromobacter xylosoxidans C54] Length = 1370 Score = 1640 bits (4247), Expect = 0.0, Method: Composition-based stats. Identities = 692/1375 (50%), Positives = 958/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++ ++P L+ Q SY FL + AP +R +GLQAAF S+ Sbjct: 1 MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTAPSDRVADGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P FDV +C R LTYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGMARLEFVSYVLGEPVFDVKECQQRGLTYASPLRAKVRLVLLDR--EVSKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KDI+ R+DRRRK+PVT A+GM E IL+ F+ + + Sbjct: 179 RVIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILCKAIGMTPESILANFFDFDNFELKS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + G + D +G+ ++E K++ + L+ L G++ + + D Sbjct: 239 EGAMMEFVPE-RWKGEMARFDIAD-RSGKVIVEKDKRINAKHLRDLAAGGIQRISVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D I E L + + + DI LY + ++ YI TL Sbjct: 297 LYGRVLAKNIVDADTGEVIANANDEITESVLGALRAANVHDIQTLYTNDLDRGPYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL Sbjct: 357 RTDETADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGR 416 Query: 423 DTP-DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + EDI+ IK+LV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R Sbjct: 417 GEDITGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 477 VERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRV 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR+N YGF+ETP Sbjct: 537 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETP 596 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DG+V++ + YLSA+EE + IAQAN++LDE+G F ++LV CR AGE +L + Sbjct: 597 YRKIVDGRVSDQIDYLSAIEESHYVIAQANAALDEEGKFVDDLVACREAGETMLTAPANV 656 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 657 HYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPVVGTGIERTVAV 716 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 717 DSGTTVQALRGGLVDHVDAERVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPI 776 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD V + D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TS Sbjct: 777 VKRGDRVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTS 836 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 +HIEE V+ARDTKLGPEEITRDI N++E L +D+ GI +GAEV+ D+LVGK+TPK Sbjct: 837 VHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGITYIGAEVSADDVLVGKVTPK 896 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV++F R GI +++R+ S+ Sbjct: 897 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIID 956 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +++ +D +D+ I++ + + R+ ++L G+ GP+ K ++ +++ R QW Sbjct: 957 DELRRYRQDLNDQLRIVENDQFDRIEKMLVGKTVNGGPRKLAKGATITKAYLADLDRWQW 1016 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE +E K E + + F+ K +K+ GD++PPGVL+++KV++A+K Sbjct: 1017 FDIRLADEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVK 1076 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VSRI P EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1077 RRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHL 1136 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G +I ++ D + + +R++L+KV T +I + D+ V+ +A+ K Sbjct: 1137 GWAAKGVGHRIADMLRDERT-AQVKNVRAYLDKVYNTTGTGARIDELTDEEVMEMAQNLK 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADL----------DESGQSILYDGLTGEPFDRPVTV 1251 +GVP +TPVFDGA EE I ML +A Q+ LYDG TGE F+RPVTV Sbjct: 1196 NGVPFATPVFDGATEEEITKMLELAYPDDVAKRMALTPSRTQAWLYDGRTGEKFERPVTV 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDD+ GRT+VYE+IV G+ + G PESFNVLVKE+++L L +DLE + Sbjct: 1316 QEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN 1370 >gi|145297378|ref|YP_001140219.1| DNA-directed RNA polymerase subunit beta [Aeromonas salmonicida subsp. salmonicida A449] gi|142850150|gb|ABO88471.1| DNA-directed RNA polymerase, beta subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 1379 Score = 1640 bits (4247), Expect = 0.0, Method: Composition-based stats. Identities = 697/1364 (51%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK +++D P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 38 MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEAD----PEGEYGLEAAFRSV 93 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPIT++SG+A L++VSY P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 94 FPITSYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TV 151 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 152 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 211 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD + VRIDRRRK+P + L AL SEEIL+ F+ I + + Sbjct: 212 RVIPYRGSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFSSEEILANFFETIGFEVKD 271 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + +V G V+E+G+++T+ ++ L++ V + + + Sbjct: 272 GKLMMDLVPERL-RGETATFDIV--ANGAVVVETGRRVTARHIRQLEKDAVTQIEVPVEY 328 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A++ + +TGE+ + A + +++ + + + +L+ + +++ AY+ TL Sbjct: 329 VVGKVAAKNYTHPQTGEMVVTANQALSLEAVANLSQAGFKHFEVLFTNELDHGAYMSETL 388 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + R +AL++IYR+MRPG+ T AE +F LFF S++YDLSTVGR+K N RL+ Sbjct: 389 RIDSSSSRLEALVEIYRMMRPGEPPTREAAEQLFENLFFSSERYDLSTVGRMKFNRRLSR 448 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + K+DI+ ++K L+D+RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 449 EDETGAGTLTKDDIVEVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 508 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 509 ERAVKERLSLGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 568 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ ++R N YGF+ETPY Sbjct: 569 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYSRTNEYGFLETPY 628 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T++V YLSA+EE IAQAN++ EDG +EL+ CR GE + ++I Sbjct: 629 RKVIDGVITDEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHKGESTFMNADQIQ 688 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 689 YMDVSPQQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVD 748 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+++ VDA RIVI+ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 749 SGVTVVAKRGGMIDYVDASRIVIKVNEDELLPGEAGIDIYSLTKYTRSNQNTCINQRPCV 808 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V D++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDS+L++ER+V ED T+I Sbjct: 809 MLGEPVMAGDVVADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILVNERVVQEDRLTTI 868 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 869 HIQELACISRDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKG 928 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GV GTVVDV++F R G++K++R+ +E Sbjct: 929 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGVEKDKRAKEIEEM 988 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ I+ R +L S D +++ R++W+ Sbjct: 989 QLKEAKKDLTEEFKILEDGIFGRSRNLLLAAG-------------YSEDRLNKLDRTKWF 1035 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + A++DE Q +E + Q+ K+ + +F+NK KI GDD+ PGVL++VKV++A+KR Sbjct: 1036 ELAIEDEAKQIELEQIAEQHIELKADFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKR 1095 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1096 RIQPGDKMAGRHGNKGVISKICPVEDMPHDEYGRPVDIVLNPLGVPSRMNIGQILEVHLG 1155 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +I + +A ++ + + + I++ DD V + + Sbjct: 1156 LAAKGIGEKIDRMIKEQRALHEMRDFLQQVYDLGEKDTKQVDIAELSDDDVRTLVGNLRK 1215 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+PV+TPVFDGA E I ++L++ADL ESGQ L+DG TG F+R VTVGY+YMLKLNH+ Sbjct: 1216 GLPVATPVFDGAKEHEIKALLKLADLPESGQISLFDGRTGNVFERKVTVGYMYMLKLNHL 1275 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1276 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1335 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+L+ Sbjct: 1336 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELDEE 1379 >gi|251793498|ref|YP_003008227.1| DNA-directed RNA polymerase subunit beta [Aggregatibacter aphrophilus NJ8700] gi|247534894|gb|ACS98140.1| DNA-directed RNA polymerase, beta subunit [Aggregatibacter aphrophilus NJ8700] Length = 1342 Score = 1640 bits (4247), Expect = 0.0, Method: Composition-based stats. Identities = 706/1367 (51%), Positives = 971/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P++++IP L+ +Q S++ F+ + +GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLNIPYLLTIQIDSFEKFIQRD----PDGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++VSY+ P FDV +C R TYA PL++ LRL+ +D D G +I Sbjct: 57 FPIVSTNGNTELQYVSYQLGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDKDAAPG--TI 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +E+IL F+ KI + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEQILDLFFDKISFEIKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +K+L++ V + + ++ Sbjct: 235 NKLLMTLVPERL-RGETAAFDIE--AKGKVYVERGRRITARHIKALEKDKVTQVEVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A + + L ++ + I L+ + ++ YI TL Sbjct: 292 IVGKVAAKDYVDLATGELVCPANMELSLELLAKLAQAGYTQIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE++F+ LFF SD+YDLS VGR+K N L + Sbjct: 352 RVDPSNDRLSALVEIYRMMRPGEPPTKEAAEALFDNLFFSSDRYDLSAVGRMKFNRSLGI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDI++++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEATGNGTLSNEDIVSVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT ++ YLSA+EE IAQANSSLDED FT+ V CR GE L E+I Sbjct: 592 RKVVNGQVTEEIEYLSAIEEGKYVIAQANSSLDEDFRFTDAFVTCRGEHGESGLYKPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIEKAVAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G ++ VDA RIV++ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTIQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPIERGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ ++ R+ +L + + + R++W Sbjct: 952 MQLKQAKKDLSEEFEILEAGLFMRIRNLLLSGG-------------FDAKSLDKLDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +E+ Q +E L Q+E + E + + + KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTLDNEEKQHQLEQLAEQHEELRKEFERKLEVQRNKIIQGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K I+ LR +++K G GS +S + D+ V+R+A+ Sbjct: 1119 GLAAKGIGDQINAMI---KQQQSIAKLREYMQKAYDLGGGSQKVDLSTFTDEEVMRLAQN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E+ I +L + L SGQ LYDG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPIATPVFDGAHEKEIKGLLELGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV+GN + GTPESFNV++KE+++LG++IDL+ Sbjct: 1296 DDVNGRTKMYKNIVSGNQQMDPGTPESFNVIMKEIRSLGINIDLDEE 1342 >gi|296137521|ref|YP_003644763.1| DNA-directed RNA polymerase, beta subunit [Thiomonas intermedia K12] gi|295797643|gb|ADG32433.1| DNA-directed RNA polymerase, beta subunit [Thiomonas intermedia K12] Length = 1367 Score = 1640 bits (4246), Expect = 0.0, Method: Composition-based stats. Identities = 702/1374 (51%), Positives = 962/1374 (70%), Gaps = 17/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FG ++D+P L+ Q SY+ FL ++ +R +EGL+AAF+++ Sbjct: 1 MSYSFTEKKRIRKSFGSRQSVLDVPYLLATQINSYEAFLQKDLPLPQRKDEGLEAAFRAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + + +E+ Y P FDV +C R LT+A L+ +RLIV D ++ Sbjct: 61 FPIVSHNQYVRMEYNGYTLARPVFDVRECQQRGLTFASALRAKVRLIVMDR--EAAKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI++ R+DRRRK+PVT L ALG++ E+IL+ F+ Sbjct: 179 RIIPYRGSWLDFEFDAKDILYFRVDRRRKMPVTILLKALGLNPEQILAHFFAFDHMQLMD 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D D G L+D G+ V+ K++ + L+ L++ G + L + D Sbjct: 239 DGALLEFVP-DHFKGEVARFDLID-QNGKVVVAKDKRINTRHLRELEQGGTQRLSVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A ++V+ +TGEI A + + E L++I + I+ I LY++ ++ A+I TL Sbjct: 297 LLGKVLARNLVSQDTGEIVARANEELTEALLKKIREAGIQQIQTLYINDLDQGAFISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LFFD+D YDLS VGR+K N RL Sbjct: 357 RIDEVADQLGAKVAIYRMMRPGEPPTEDAVEALFNRLFFDADAYDLSRVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + EDI+A+IK+LV+LRNG+G +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 417 EEIEGEMVLSHEDIMAVIKLLVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLSRI 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP D IN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLGQAETENLMPHDFINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL FAR+N YGFIETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEYGFIETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V D KVT+ + YLSA+EE IAQAN+ +DE G +ELV R AGE I+V E++ Sbjct: 597 RRVIDRKVTDQIDYLSAIEEGKYVIAQANAGMDEHGMLNDELVSAREAGESIMVSPERVQ 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP+L+ E P VGTG+E V A Sbjct: 657 YMDVSPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPLVGTGVERVTAVD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VD+ RIV+R + + GVDIY L+K+QRSNQNT ++QRPLV Sbjct: 717 SGTVVTALRGGVVDYVDSARIVVRVNDDETQAGEVGVDIYNLIKYQRSNQNTNIHQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD++ + D++ADG STDLG+LALG+NMLVAFMPW+GYN+EDS+L+SER+V+ED FTSI Sbjct: 777 KRGDKLAKGDVVADGASTDLGELALGQNMLVAFMPWNGYNYEDSILLSERVVAEDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V ARDTKLG EEITRDIPN+SE L +DE GII VGAEV GD+LVGK+TPKG Sbjct: 837 HIEELNVPARDTKLGSEEITRDIPNLSEHQLARLDESGIIYVGAEVEAGDVLVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R GI +++R+ + + Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMYGTVIDVQVFTREGIPRDKRAQQIIDD 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL ++L G+ A GP K +++D + E R W+ Sbjct: 957 ELKRYRLDLNDQMRIVEADTFDRLGKLLTGKTANGGPNKLAKGATITADYLGETDRYNWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 DE + + +E LK E + + F+ K K+ GD++P GVL++VKV++A+KR Sbjct: 1017 DIRPADEALAQQMEQLKDSLEKRRHAFDLMFEEKRRKLTQGDELPTGVLKMVKVYLAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP + DGT VDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1077 RLQPGDKMAGRHGNKGVVSKIVPVEDMPHMPDGTTVDIVLNPLGVPSRMNIGQILETHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA +G+GK++ ++ +++ + LR FL + E + D VL +A K+ Sbjct: 1137 WASIGIGKRVNDML---QSHAKAAELRKFLGTLYNFSGKQEALDQLSDAEVLELASNLKA 1193 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESG----------QSILYDGLTGEPFDRPVTVG 1252 G+P+++PVFDGA E I ML +A D+ Q +L DG TGE F+RPVTVG Sbjct: 1194 GLPIASPVFDGASEAEIGQMLDLAYPDDIAEKLQLTAAKKQVMLTDGRTGEVFERPVTVG 1253 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 +++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1254 IMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1313 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDD GRT++YESIV G+ E G PESFNVL+KE+++LGL I+LE + Sbjct: 1314 EMLTVKSDDTQGRTKMYESIVKGDHIIEAGMPESFNVLIKEIRSLGLDIELERN 1367 >gi|294838498|ref|ZP_06783181.1| DNA-directed RNA polymerase subunit beta [Acinetobacter sp. 6013113] gi|294859142|ref|ZP_06796911.1| DNA-directed RNA polymerase subunit beta [Acinetobacter sp. 6013150] Length = 1362 Score = 1640 bits (4246), Expect = 0.0, Method: Composition-based stats. Identities = 716/1374 (52%), Positives = 983/1374 (71%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG ++E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D + G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDITDNE-GKVIVEQGKRINARHVRQMEAAGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + GE+ A ++ + + ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAEDITLRD-GEVIA-ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +DR++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADLTRDREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+DV YLSA+EE IAQA+S++D+DG+ TEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G++E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L GQ + G K+ LS DL+S Sbjct: 953 RALAIEKAQLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGG-GSTKRGDKLSEDLLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 DLELVDLLEIQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L +A ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALAGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|169797453|ref|YP_001715246.1| DNA-directed RNA polymerase subunit beta [Acinetobacter baumannii AYE] gi|184156623|ref|YP_001844962.1| DNA-directed RNA polymerase subunit beta [Acinetobacter baumannii ACICU] gi|213155733|ref|YP_002317778.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter baumannii AB0057] gi|215484890|ref|YP_002327129.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter baumannii AB307-0294] gi|239500978|ref|ZP_04660288.1| DNA-directed RNA polymerase subunit beta [Acinetobacter baumannii AB900] gi|260556345|ref|ZP_05828564.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter baumannii ATCC 19606] gi|294840894|ref|ZP_06785577.1| DNA-directed RNA polymerase subunit beta [Acinetobacter sp. 6014059] gi|301346448|ref|ZP_07227189.1| DNA-directed RNA polymerase subunit beta [Acinetobacter baumannii AB056] gi|301512026|ref|ZP_07237263.1| DNA-directed RNA polymerase subunit beta [Acinetobacter baumannii AB058] gi|301597220|ref|ZP_07242228.1| DNA-directed RNA polymerase subunit beta [Acinetobacter baumannii AB059] gi|226699357|sp|B7H1J8|RPOB_ACIB3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699358|sp|B7I360|RPOB_ACIB5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699359|sp|B2I1Z1|RPOB_ACIBC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699361|sp|B0VDI0|RPOB_ACIBY RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|78099422|gb|ABB20847.1| RNA polymerase subunit B [Acinetobacter baumannii] gi|169150380|emb|CAM88277.1| DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) [Acinetobacter baumannii AYE] gi|183208217|gb|ACC55615.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Acinetobacter baumannii ACICU] gi|213054893|gb|ACJ39795.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter baumannii AB0057] gi|213986220|gb|ACJ56519.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter baumannii AB307-0294] gi|260410400|gb|EEX03699.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter baumannii ATCC 19606] Length = 1362 Score = 1640 bits (4246), Expect = 0.0, Method: Composition-based stats. Identities = 716/1374 (52%), Positives = 982/1374 (71%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG ++E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D + G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDITDNE-GKVIVEQGKRINARHVRQMEAAGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + GE+ A ++ + + ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAEDITLRD-GEVIA-ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +DR++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADLTRDREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+DV YLSA+EE IAQA+S++D+DG+ TEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G++E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L GQ + G K+ LS DL+S Sbjct: 953 RALAIEKAQLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGG-GSTKRGDKLSEDLLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L +A ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALAGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|15839222|ref|NP_299910.1| DNA-directed RNA polymerase subunit beta [Xylella fastidiosa 9a5c] gi|17369366|sp|Q9PA86|RPOB_XYLFA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|9107862|gb|AAF85430.1|AE004070_2 RNA polymerase beta subunit [Xylella fastidiosa 9a5c] Length = 1388 Score = 1640 bits (4246), Expect = 0.0, Method: Composition-based stats. Identities = 700/1390 (50%), Positives = 968/1390 (69%), Gaps = 35/1390 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK+ I+ +P L+ +Q SY FL ++ +R + GL AA KSVF Sbjct: 7 SYSFTEKKRIRKDFGKHRSILKVPFLLAIQVDSYRAFLQGDVESSQRKDIGLHAALKSVF 66 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI ++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K++K Sbjct: 67 PIVSYSGNAALEYVGYKLGEPMFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAVK 124 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 IKEQ +Y+G++PLMT++GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 125 YIKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 184 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EEIL F+ + D Sbjct: 185 IIPCRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEILGEFFEINTFHINPD 244 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G +S +L D G ++E+GK++T+ +K L+ G+ L + + L Sbjct: 245 KGVQLELVPERLRGEILSFNLTD--GGGVIVEAGKRITARHVKQLEASGISALAVPDEYL 302 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+++ TGE+ A ++E + + I + L+V+ ++ AY+ NTL Sbjct: 303 IGRILSHDVIDATTGELLASANSEVNEDRIVAFRKAGIDSVGTLWVNDLDRGAYLSNTLR 362 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D + + +A ++IYR+MRPG+ T A+++F+ LFF D+YDLS VGR+K N R+ Sbjct: 363 IDPTRTQLEAQVEIYRMMRPGEPPTKEAAQNLFHNLFFTFDRYDLSMVGRMKFNRRVGRK 422 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + + +IK L ++RNG+G +DDID+LGN Sbjct: 423 EVAGEPVLYDKKYFSDRNDEESRRLVSKLGETSDILDVIKGLCEIRNGRGVVDDIDHLGN 482 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 483 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 542 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RRLSALG GG+ R RAG E+RDVH +HYG +C ET EG NIG Sbjct: 543 LSQFMDQNNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHLSHYGCLCTIETPEGPNIG 602 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV +G+VT++V YLSA+EE IAQAN+ D++G T Sbjct: 603 LINSLAVFARTNQYGFLETPYRKVVEGRVTDEVEYLSAIEENQYVIAQANTLTDDNGQLT 662 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E V CR GE +L P + ++D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 663 ESFVPCRFQGESLLKPPSYVHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 722 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+A+ P VGTG+E VA+ SG + A+R G+++QVDA RIV++ E + + +GVD Sbjct: 723 PTLRAQKPLVGTGIERTVARDSGVTVNARRGGVIDQVDAGRIVVKVNESEIIGATDAGVD 782 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD V D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 783 IYGLIKYTRSNQNTCINQRPLVNVGDIVTSGDVLADGPSTDIGELALGQNMLIAFMPWNG 842 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLG EEI+ DIPNVSE+ L +DE G Sbjct: 843 YNFEDSILLSERVVEEDRYTTIHIEELTCIARDTKLGSEEISADIPNVSEQALNRLDESG 902 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDILVGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 903 VVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 962 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ SG Sbjct: 963 DVQVFTRDGIEKDKRAHQIEEYEIKRVKKDFDDQFRILEGAIYARLRSQIVGKVVNSGVD 1022 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK V++ + +S W+ ++DE ++ + Q + + + RF +K KI Sbjct: 1023 -IKKGEVITGAYLDGLKKSDWFALRMKDEVAVEAIDRAQKQIQAYQKEFDQRFSDKRSKI 1081 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMPF++DGTPVDI Sbjct: 1082 TQGDDLAPGVLKMVKVFLAVKRCIQPGDKMAGRHGNKGVVSNVVPVEDMPFMEDGTPVDI 1141 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG- 1179 VLNPLGVPSRMN+GQI E HLGWA GLG +I+ ++ +AN I+ LR FL ++ Sbjct: 1142 VLNPLGVPSRMNIGQILEVHLGWAAKGLGHRIQRML---EANAAIADLRKFLNEIYNHDK 1198 Query: 1180 ---SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + DD +L +A+ GVP+++PVFDGA E+ I ML +A+L GQ+ L Sbjct: 1199 SVVGERVDLSQFSDDELLNMAKNLTDGVPMASPVFDGASEQEIKRMLDLAELPTGGQTQL 1258 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGEPFDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1259 YDGHTGEPFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1318 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G+ G PESFNVLVKE+++ Sbjct: 1319 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGDHQMVAGMPESFNVLVKEIRS 1378 Query: 1357 LGLSIDLENS 1366 L ++I+LE++ Sbjct: 1379 LAINIELEDN 1388 >gi|121596184|ref|YP_988080.1| DNA-directed RNA polymerase subunit beta [Acidovorax sp. JS42] gi|158513932|sp|A1WCM9|RPOB_ACISJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|120608264|gb|ABM44004.1| DNA-directed RNA polymerase subunit beta [Acidovorax sp. JS42] Length = 1374 Score = 1639 bits (4245), Expect = 0.0, Method: Composition-based stats. Identities = 697/1379 (50%), Positives = 968/1379 (70%), Gaps = 18/1379 (1%) Query: 1 MAKG--VVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAA 58 MA+ + R+RK FG ++ +P L+++Q+ +Y FL + AP +R NEGLQAA Sbjct: 1 MAQTSTYSYTERKRIRKSFGSRDSVLKVPYLLQMQRDAYTAFLQADTAPQKRSNEGLQAA 60 Query: 59 FKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 F S FPI + +G ++FV Y P FDV +C R LT+A ++ ++LI++D + T Sbjct: 61 FNSAFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTS 120 Query: 119 -AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 +K +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGK Sbjct: 121 QSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGK 180 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIV 237 LL++ RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G++ E IL+ F+ Sbjct: 181 LLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDN 240 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 + L G + D G+ ++ K++T+ + L++ G + Sbjct: 241 FRLMDSGAQLEFVPERL-RGEVARFDITD-KAGKVIVAKDKRVTARHTRELEQSGTTHIS 298 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 + D L G VA +IV+G+TGEI +A + + E L+++ + ++D+ ++Y + ++ AY Sbjct: 299 VPEDFLIGRVVARNIVDGDTGEILAKANEELTEALLKKLRAAGVQDLQVIYTNELDQGAY 358 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 I TL D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N Sbjct: 359 ISQTLRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFN 418 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 ++ D + +DI+A++KILVDLRNGKG +DDID+LGNRRVR VGE+ +NQYR Sbjct: 419 AKIGRDEATGPMVLSNDDILAVVKILVDLRNGKGEVDDIDHLGNRRVRCVGELAENQYRT 478 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL R+E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH Sbjct: 479 GLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITH 538 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGF Sbjct: 539 KRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGF 598 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 IETPYR+V DGKVT ++ YLSA+EE IAQAN++LD +G T +LV R GE LV Sbjct: 599 IETPYRRVVDGKVTMEIDYLSAIEEGKYIIAQANATLDAEGRLTGDLVSAREKGESTLVS 658 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 +++ ++D SP Q+VS+AASL+PFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E Sbjct: 659 ADRVQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIER 718 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 V A SG + A R G+V+ VDA RIV+R + + GVDIY L+K+QRSNQNT ++ Sbjct: 719 VAAVDSGTVVTANRGGVVDYVDATRIVVRVNDDEAVAGEVGVDIYNLIKYQRSNQNTNIH 778 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 QRP+VK GD++ + D+IADG STDLG++A+G+NML+AFMPW+GYNFEDS+LISER+V+ED Sbjct: 779 QRPIVKKGDKLAKGDVIADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAED 838 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 +TSIHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD LVGK Sbjct: 839 RYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGK 898 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G GTV+DV++F R GI +++R+ Sbjct: 899 VTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQ 958 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 + ++++ D +D+ I++ + + R+ ++L G+ A GP+ K T + ++ Sbjct: 959 QIIDDELKRFRLDLNDQLRIVEADAFDRIEKLLTGRVANGGPQKLAKGTKIDKAYLASVE 1018 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 + W+ +E+V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV+ Sbjct: 1019 KFHWFDIRPAEEEVATQLESIKNALEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVY 1078 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMN+GQ+ Sbjct: 1079 LAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPADIVLNPLGVPSRMNIGQVL 1138 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 E HLGWA G+G++I ++ + + LR FLE++ + E +S DD +L +A Sbjct: 1139 EVHLGWAGKGMGQRIGDML---QREAKTAELRKFLEEIYNSRGRKEDLSQLSDDEILAMA 1195 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDR 1247 + SGVP ++PVFDGA EE I ML++A D Q+ LYDG TGE F+R Sbjct: 1196 RELTSGVPFASPVFDGASEEEIKDMLKLAYPDDLAQAKGLTETRTQAYLYDGRTGERFER 1255 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 P TVGY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1256 PTTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1315 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AYVLQEMLT+KSDDV GRT+VYE+IV G E G PESFNVLVKE+++LGL I+LE S Sbjct: 1316 AYVLQEMLTVKSDDVQGRTKVYENIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS 1374 >gi|127511085|ref|YP_001092282.1| DNA-directed RNA polymerase, beta subunit [Shewanella loihica PV-4] gi|158513462|sp|A3Q975|RPOB_SHELP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|126636380|gb|ABO22023.1| DNA-directed RNA polymerase, beta subunit [Shewanella loihica PV-4] Length = 1343 Score = 1639 bits (4245), Expect = 0.0, Method: Composition-based stats. Identities = 698/1364 (51%), Positives = 962/1364 (70%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D GL+AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKF----TDQDPTGERGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+ + L AL +++IL F+ ++ Y + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLAASIILRALDYSTQDILDLFFERVQYKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L A D + G S + D + G ++E G+++T+ ++ L++ L + + Sbjct: 235 DSLVMALVA-DRLRGETASYDIKDAE-GNIIVEKGRRITARHIRQLEKTNTTELEVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D ++ +TGE+ + A I + L ++ + I+DI LYV+ +++ AYI +TL Sbjct: 293 ISGKIAAQDYIDPDTGEVLVSANAEISLEDLAKLSMAGIKDIDTLYVNELDHGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL + Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLGI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI+A+++ ++++RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 DDDEGTGILTKEDIVAVMQKIIEIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T+ V YLSA+EE IAQAN +D DG EE + CR GE + + Sbjct: 593 RKVVDGVITDQVDYLSAIEEGRYVIAQANIEVDADGRMVEEQIACRHKGESTFMRAADVQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + AKR G V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVAAKRGGYVDYVDASRIVVKVNEDELTPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGEPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ ++ R +L G + + PR Q Sbjct: 953 HIAQAKKDLTEEFKILEEGVFGRARNLLIGAG-------------FAEAELDALPRPQLL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++DE Q +E L Q+E K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 VQTIEDETKQTELEQLAEQHEELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQ+ E HLG Sbjct: 1060 TIQPGDKMAGRHGNKGVISKINPIEDMPYDENGNPVDIVLNPLGVPSRMNIGQVLEVHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G +I +++ + + ++ + ++ I + D+ VLR+A+ K Sbjct: 1120 AAAKGIGDRITAMLEEQRELAELRGYIKKVYELGEDVQQQVDIDSFTDEEVLRLAKNLKG 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P +TP FDGA E+ I ML +A L SGQ L+DG TG F+RPVTVGY+YMLKLNH+ Sbjct: 1180 GIPTATPAFDGAKEKEIKDMLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1300 NGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQE 1343 >gi|169634594|ref|YP_001708330.1| DNA-directed RNA polymerase subunit beta [Acinetobacter baumannii SDF] gi|226699360|sp|B0VLZ6|RPOB_ACIBS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|169153386|emb|CAP02513.1| DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) [Acinetobacter baumannii] Length = 1362 Score = 1639 bits (4245), Expect = 0.0, Method: Composition-based stats. Identities = 716/1374 (52%), Positives = 982/1374 (71%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG ++E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKLPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D + G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDITDNE-GKVIVEQGKRINARHVRQMEAAGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + GE+ A ++ + + ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAEDITLRD-GEVIA-ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +DR++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADLTRDREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+DV YLSA+EE IAQA+S++D+DG+ TEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G++E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L GQ + G K+ LS DL+S Sbjct: 953 RALAIEKAQLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGG-GSTKRGDKLSEDLLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L +A ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALAGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|294341866|emb|CAZ90295.1| DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) [Thiomonas sp. 3As] Length = 1367 Score = 1639 bits (4244), Expect = 0.0, Method: Composition-based stats. Identities = 702/1374 (51%), Positives = 961/1374 (69%), Gaps = 17/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FG ++D+P L+ Q SY+ FL ++ +R +EGL+AAF+++ Sbjct: 1 MSYSFTEKKRIRKSFGSRQSVLDVPYLLATQINSYEAFLQKDLPLPQRKDEGLEAAFRAI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + + +E+ Y P FDV +C R LT+A L+ +RLIV D ++ Sbjct: 61 FPIVSHNQYVRMEYNGYTLARPVFDVRECQQRGLTFASALRAKVRLIVMDR--EAAKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI++ R+DRRRK+PVT L ALG++ E+IL+ F+ Sbjct: 179 RIIPYRGSWLDFEFDAKDILYFRVDRRRKMPVTILLKALGLNPEQILAHFFAFDHMQLMD 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D D G L+D G+ V+ K++ + L+ L++ G + L + D Sbjct: 239 DGALLEFVP-DHFKGEVARFDLID-QNGKVVVAKDKRINTRHLRELEQGGTQRLSVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A ++V+ +TGEI A + + E L++I + I+ I LY++ ++ A+I TL Sbjct: 297 LLGKVLARNLVSQDTGEIVARANEELTEALLKKIREAGIQQIQTLYINDLDQGAFISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LFFD+D YDLS VGR+K N RL Sbjct: 357 RIDEVADQLGAKVAIYRMMRPGEPPTEDAVEALFNRLFFDADAYDLSRVGRMKFNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + EDI+A+IK+LV+LRNG+G +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 417 EEIEGEMVLSHEDIMAVIKLLVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLSRI 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP D IN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 477 ERAVKERLGQAETENLMPHDFINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL FAR+N YGFIETPY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEYGFIETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V D KVT+ + YLSA+EE IAQAN+ +DE G +ELV R AGE I+V E++ Sbjct: 597 RRVIDRKVTDQIDYLSAIEEGKYVIAQANAGMDEHGMLNDELVSAREAGESIMVSPERVQ 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP+L+ E P VGTG+E V A Sbjct: 657 YMDVSPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPLVGTGVERVTAVD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A R G+V+ VD+ RIV+R + + GVDIY L+K+QRSNQNT ++QRPLV Sbjct: 717 SGTVVTALRGGVVDYVDSARIVVRVNDDETQAGEVGVDIYNLIKYQRSNQNTNIHQRPLV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD + + D++ADG STDLG+LALG+NMLVAFMPW+GYN+EDS+L+SER+V+ED FTSI Sbjct: 777 KRGDILAKGDVVADGASTDLGELALGQNMLVAFMPWNGYNYEDSILLSERVVAEDRFTSI 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V ARDTKLG EEITRDIPN+SE L +DE GII VGAEV GD+LVGK+TPKG Sbjct: 837 HIEELNVPARDTKLGSEEITRDIPNLSEHQLARLDESGIIYVGAEVEAGDVLVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R GI +++R+ + + Sbjct: 897 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMYGTVIDVQVFTREGIPRDKRAQQIIDD 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL ++L G+ A GP K +++D + E R W+ Sbjct: 957 ELKRYRLDLNDQMRIVEADTFDRLGKLLTGKTANGGPNKLAKGATITADYLGETDRYNWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 DE + + +E LK E + + F+ K K+ GD++P GVL++VKV++A+KR Sbjct: 1017 DIRPADEALAQQMEQLKDSLEKRRHAFDLMFEEKRRKLTQGDELPTGVLKMVKVYLAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I+P EDMP + DGT VDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1077 RLQPGDKMAGRHGNKGVVSKIVPVEDMPHMPDGTTVDIVLNPLGVPSRMNIGQILETHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA +G+GK++ ++ +++ + LR FL + E + D VL +A K+ Sbjct: 1137 WASIGIGKRVNDML---QSHAKAAELRKFLGTLYNFSGKQEALDQLSDAEVLELASNLKA 1193 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESG----------QSILYDGLTGEPFDRPVTVG 1252 G+P+++PVFDGA E I ML +A D+ Q +L DG TGE F+RPVTVG Sbjct: 1194 GLPIASPVFDGASEAEIGQMLDLAYPDDIAEKLQLTAAKKQVMLTDGRTGEVFERPVTVG 1253 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 +++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1254 IMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1313 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDD GRT++YESIV G+ E G PESFNVL+KE+++LGL I+LE + Sbjct: 1314 EMLTVKSDDTQGRTKMYESIVKGDHIIEAGMPESFNVLIKEIRSLGLDIELERN 1367 >gi|152977728|ref|YP_001343357.1| DNA-directed RNA polymerase subunit beta [Actinobacillus succinogenes 130Z] gi|171472908|sp|A6VKC5|RPOB_ACTSZ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|150839451|gb|ABR73422.1| DNA-directed RNA polymerase, beta subunit [Actinobacillus succinogenes 130Z] Length = 1342 Score = 1639 bits (4244), Expect = 0.0, Method: Composition-based stats. Identities = 715/1367 (52%), Positives = 973/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G + R+RK FGK +++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYTEKKRIRKDFGKRSQVLNVPYLLTIQLDSFDKFIQRD----PDGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G+ L++VSY+ P FDV +C R T+A PL++ LRL+ +D D G ++ Sbjct: 57 FPIVSNNGSTELQYVSYKLGEPVFDVRECQIRGTTFAAPLRVKLRLVSYDKDAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQDVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L AL +EEIL F+ K+V+ +G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALNYTTEEILDLFFDKVVFEIQG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G + + G+ +E G+++T+ +K+L++ GVK + + ++ Sbjct: 235 DKLLMELVPERL-RGETATFDIE--AEGKVYVERGRRITARHIKALEKDGVKKVEVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ E+GE+ A I + L ++ + I L+ + ++ YI TL Sbjct: 292 IIGKVAAKDYVDLESGEVICAANTEISLELLAKLAQAGYTAIEALFTNDLDFGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE +F+ LFF ++YDLS VGR+K N L + Sbjct: 352 RVDPSCDRLSALVEIYRMMRPGEPPTKEAAEGLFDNLFFSQERYDLSAVGRMKFNRSLGI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D+ + KEDI++++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DSETGSGVLSKEDIVSVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAVTPQDLINAKPISAAVREFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT ++ YLSA+EE IAQAN++LD+D FT+ V R GE L E+I Sbjct: 592 RKVVNGQVTEEIEYLSAIEEGKYIIAQANANLDDDFRFTDTFVTARGEHGESGLYRPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G ++ VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTIQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGEPVGRGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ ++SR+ +L +S + R++W Sbjct: 952 MQLKQAKKDLVEELEILEAGLFSRVRNLLVDGG-------------ISEKELDTMERAKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + E Q +E L QYE + E + + K KI GDD+ PGV +VVKV++A+K Sbjct: 999 LEQTLSSESKQSRLEQLAEQYEELRKDFEHKLEVKRSKIIQGDDLAPGVQKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGRPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G++I ++ K DI LR +++K G GS ++ + D+ VLR+AE Sbjct: 1119 GLAAKGIGEQINIML---KQKQDIEKLRGYIQKAYDLGGGSQVVDLNTFTDEEVLRLAEN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGADE I +L + L SGQ LYDG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGMPLATPVFDGADESEIKGLLELGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G E GTPESFNV++KE+++LGL+IDL+ + Sbjct: 1296 DDVNGRTKMYKNIVGGTHYMEPGTPESFNVIMKEIRSLGLNIDLDEA 1342 >gi|78099438|gb|ABB20855.1| RNA polymerase subunit B [Acinetobacter genomosp. 3] Length = 1362 Score = 1639 bits (4244), Expect = 0.0, Method: Composition-based stats. Identities = 710/1374 (51%), Positives = 974/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG ++E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDIADND-GKVIVEQGKRINARHVRQMEAAGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AE+I + GE+ A ++ + + ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAENITLRD-GEVIA-ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTAGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+ V YLSA+EE IAQA+S++D+DG+ TEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDAVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G +E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGAIEYVDASRIVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNIIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L GQ + G K+ L +++S Sbjct: 953 RALAIEKAQLDAYRKDLKEEYKIFEEAARERVIRLLKGQESNGG-GSTKRGDKLVEEVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E + D V Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDAEV 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ ++GVP++TPVFDGA+E I +L +A + +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALSGNLRAGVPLATPVFDGAEESQIKDLLELAGISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|258620703|ref|ZP_05715738.1| DNA-directed RNA polymerase beta subunit [Vibrio mimicus VM573] gi|258586901|gb|EEW11615.1| DNA-directed RNA polymerase beta subunit [Vibrio mimicus VM573] Length = 1375 Score = 1639 bits (4244), Expect = 0.0, Method: Composition-based stats. Identities = 712/1366 (52%), Positives = 978/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 35 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 90 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 91 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 148 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 149 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 208 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 209 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 268 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 269 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 325 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 326 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 385 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF +++YDLSTVGR+K N + Sbjct: 386 RVDSTTDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSAERYDLSTVGRMKFNSSIGR 445 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 446 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 505 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 506 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 565 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 566 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 625 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+GSF +ELV R GE L PRE +D Sbjct: 626 RRVVNGIVTDEVDYLSAIEEGQFVIAQANAKLTEEGSFADELVTARQKGESGLHPREHVD 685 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 686 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 745 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 746 SGVTAVAKRGGMIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 805 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 806 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 865 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 866 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 925 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 926 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 985 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 986 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLGSIERKKWL 1032 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++++++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1033 EQTLENDELQTQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1092 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1093 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1152 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G I+ D+ V +A+ Sbjct: 1153 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDIAALSDEEVRTLAQNL 1209 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1210 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1269 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1270 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1329 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1330 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1375 >gi|261209791|ref|ZP_05924094.1| DNA-directed RNA polymerase beta subunit [Vibrio sp. RC341] gi|260841147|gb|EEX67664.1| DNA-directed RNA polymerase beta subunit [Vibrio sp. RC341] Length = 1341 Score = 1639 bits (4244), Expect = 0.0, Method: Composition-based stats. Identities = 714/1366 (52%), Positives = 978/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 235 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF +++YDLSTVGR+K N + Sbjct: 352 RVDSTTDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSAERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + D+ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDADEQGTLDQVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L PRE +D Sbjct: 592 RRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGMIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + +S R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLSSIERKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++++++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQTLENDELQTQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G IS D+ V +A+ Sbjct: 1119 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDISALSDEDVRTLAQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|258624488|ref|ZP_05719434.1| DNA-directed RNA polymerase beta subunit [Vibrio mimicus VM603] gi|258583237|gb|EEW08040.1| DNA-directed RNA polymerase beta subunit [Vibrio mimicus VM603] Length = 1375 Score = 1639 bits (4243), Expect = 0.0, Method: Composition-based stats. Identities = 712/1366 (52%), Positives = 978/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 35 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 90 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 91 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 148 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 149 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 208 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 209 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 268 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 269 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 325 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 326 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 385 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF +++YDLSTVGR+K N + Sbjct: 386 RVDSTTDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSAERYDLSTVGRMKFNSSIGR 445 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 446 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 505 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 506 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 565 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 566 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 625 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+GSF +ELV R GE L PRE +D Sbjct: 626 RRVVNGIVTDEVDYLSAIEEGQFVIAQANAKLTEEGSFADELVTARQKGESGLHPREHVD 685 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 686 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 745 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 746 SGVTAVAKRGGMIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 805 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 806 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 865 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 866 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 925 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 926 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 985 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 986 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLGSIERKKWL 1032 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++++++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1033 EQTLENDELQTQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1092 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1093 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1152 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G I+ D+ V +A+ Sbjct: 1153 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDIAALSDEEVRTLAQNL 1209 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1210 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1269 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1270 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1329 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1330 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1375 >gi|260550476|ref|ZP_05824686.1| RNA polymerase subunit B [Acinetobacter sp. RUH2624] gi|260406391|gb|EEW99873.1| RNA polymerase subunit B [Acinetobacter sp. RUH2624] Length = 1362 Score = 1638 bits (4242), Expect = 0.0, Method: Composition-based stats. Identities = 715/1374 (52%), Positives = 978/1374 (71%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG ++E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D + G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDIADNE-GKVIVEQGKRINARHVRQMEAAGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + GE+ A ++ + + ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAEDITLRD-GEVIA-ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTAGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+DV YLSA+EE IAQA+S++D+DG+ TEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G +E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGAIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L GQ + G K+ LS DL+S Sbjct: 953 RALAIEKAQLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGG-GSTKRGDKLSEDLLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPTDEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E + DD + Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDDEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALSGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|229527011|ref|ZP_04416407.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae 12129(1)] gi|229335534|gb|EEO01015.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae 12129(1)] Length = 1341 Score = 1638 bits (4242), Expect = 0.0, Method: Composition-based stats. Identities = 714/1366 (52%), Positives = 977/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 235 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF +++YDLSTVGR+K N + Sbjct: 352 RVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L P E +D Sbjct: 592 RRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPCEHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + +S R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLSSIERKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +++E++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G IS+ D+ V +A Sbjct: 1119 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|262401579|ref|ZP_06078146.1| DNA-directed RNA polymerase beta subunit [Vibrio sp. RC586] gi|262352294|gb|EEZ01423.1| DNA-directed RNA polymerase beta subunit [Vibrio sp. RC586] Length = 1341 Score = 1638 bits (4241), Expect = 0.0, Method: Composition-based stats. Identities = 713/1366 (52%), Positives = 977/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 235 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF +++YDLSTVGR+K N + Sbjct: 352 RVDSTTDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSAERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + D+ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDADEQGTLDQVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L PRE +D Sbjct: 592 RRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGMIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLGSIERKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++++++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQTLENDELQTQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G IS D+ V +A+ Sbjct: 1119 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDISALSDEDVRTLAQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|165977163|ref|YP_001652756.1| DNA-directed RNA polymerase subunit beta [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226699364|sp|B0BSF5|RPOB_ACTPJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|165877264|gb|ABY70312.1| RNA polymerase beta subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 1342 Score = 1638 bits (4241), Expect = 0.0, Method: Composition-based stats. Identities = 710/1367 (51%), Positives = 975/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q SY+ F+ + +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSYEKFIQRDSD----GQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G+ L++VSYE P FDV +C R TYA PL++ LRL+ FD + G ++ Sbjct: 57 FPIVSNNGSTELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEILS F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILSMFFDKVNFEIQD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +++L++ +K + + + Sbjct: 235 NKLLMTLVPERL-RGETAAFDIE--ANGKVYVERGRRITARHIRTLEKDEIKQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A I + L ++ + ++I +L+ + +++ YI TL Sbjct: 292 IVGKVAAKDYVDLSTGELVCPANMEISMEMLAKLSQAGYKEIEVLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ +FF +D+YDLS VGR+K N LNL Sbjct: 352 RVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSLNL 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DI ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEGVGSGILSNDDITGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D + PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 532 ALGPGGLTRERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT D+ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E I Sbjct: 592 RKVVNGQVTEDIEYLSAIEEGNYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG AIVAKR GIV++VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAIVAKRGGIVQRVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VNLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ +++R+ +L S + + R +W Sbjct: 952 MQLKEAKKDLTEELEILEAGLFTRVRNLLIEGGV-------------SEAELDKVAREKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A++ Sbjct: 999 LEQTLDDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVR 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K ++ LR +++K G GS + +S + D+ V+R+AE Sbjct: 1119 GLAAKGIGDQINAMI---KQQQSVAKLREYIQKAYDLGHGSQSVDLSTFTDEEVMRLAEN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E I +L + DL SGQ L+DG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPLATPVFDGAHESEIKGLLELGDLPTSGQITLFDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G E G PESFNVL+KE++ALG+ ++L+ Sbjct: 1296 DDVNGRTKMYKNIVDGTHQMEPGMPESFNVLLKEIRALGIDMELDEE 1342 >gi|52424267|ref|YP_087404.1| DNA-directed RNA polymerase subunit beta [Mannheimia succiniciproducens MBEL55E] gi|81387641|sp|Q65W41|RPOB_MANSM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|52306319|gb|AAU36819.1| RpoB protein [Mannheimia succiniciproducens MBEL55E] Length = 1342 Score = 1638 bits (4241), Expect = 0.0, Method: Composition-based stats. Identities = 713/1367 (52%), Positives = 976/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G + R+RK FGK P+++++P L+ +Q S++ F+ + +GL+AAF+SV Sbjct: 1 MGYSYTEKKRIRKDFGKRPQVLNVPYLLTIQLDSFEKFIQRD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G+ L++VSY+ P FDV +C R T+A PL++ LRL+ +D D G +I Sbjct: 57 FPIVSNNGSTELQYVSYKLGEPVFDVRECQIRGTTFAAPLRVNLRLVSYDRDAAPG--TI 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQDVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL F+ KI + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYSTEEILDLFFEKIQFEIQD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ +++L++ V + + ++ Sbjct: 235 NKLLMALVPERL-RGETASFDIE--ANGKVYVERGRRITARHIRTLEKDNVTKIDVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D ++ E+GE+ A I L ++ + + I L+ + ++ YI TL Sbjct: 292 IVGKVSAKDYIDLESGELVCPANMEISLDILAKLAQAGYKSIETLFTNDLDFGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE++F+ LFF +++YDLS VGR+K N L L Sbjct: 352 RVDPSSDRLSALVEIYRMMRPGEPPTKEAAEALFDNLFFSAERYDLSAVGRMKFNRSLGL 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + KEDI+ ++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 AEGVGNGVLSKEDIVGVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+V PQDLINAKPV +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAVTPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNNYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLSA+EE N IAQAN+SLDED FT+ V CR GE L E+I Sbjct: 592 RKVVDGQVTEEIEYLSAIEEGNYVIAQANASLDEDFRFTDAFVTCRGEHGESGLYRPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SP+QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 QYMDVSPQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR GI++ VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGIIQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGEPIGRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGETALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ ++SR+ +L + + R++W Sbjct: 952 MQLKEAKKDIAEELEILEAGLFSRVRNLLIDGGV-------------DAKELDRLDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE Q +E L QYE + E + + K KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTLNDEAKQNQLEQLAEQYEELRKDFEHKLEVKRGKIIQGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G++I ++ K +I LR +++K G GS ++ + D+ V+R+A+ Sbjct: 1119 GLAAKGIGEQINRML---KEKQEIEKLRGYIQKAYDLGGGSQKVDLNTFTDEEVMRLAQN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA+E+ I +L + L SGQ LYDG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGMPLATPVFDGAEEKEIKDLLELGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV+G + GTPESFNV++KE+++LG++IDL+ Sbjct: 1296 DDVNGRTKMYKNIVSGTHQMDPGTPESFNVIMKEIRSLGINIDLDEE 1342 >gi|15640355|ref|NP_229982.1| DNA-directed RNA polymerase subunit beta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591007|ref|ZP_01678325.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae 2740-80] gi|153216324|ref|ZP_01950402.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae 1587] gi|153819682|ref|ZP_01972349.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae NCTC 8457] gi|153823145|ref|ZP_01975812.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae B33] gi|153827137|ref|ZP_01979804.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae MZO-2] gi|227080540|ref|YP_002809091.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae M66-2] gi|254227011|ref|ZP_04920572.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae V51] gi|254292044|ref|ZP_04962821.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae AM-19226] gi|254851637|ref|ZP_05240987.1| DNA-directed RNA polymerase [Vibrio cholerae MO10] gi|9654742|gb|AAF93501.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547148|gb|EAX57278.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae 2740-80] gi|124114319|gb|EAY33139.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae 1587] gi|125620473|gb|EAZ48846.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae V51] gi|126509770|gb|EAZ72364.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae NCTC 8457] gi|126519332|gb|EAZ76555.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae B33] gi|149738965|gb|EDM53281.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae MZO-2] gi|150422030|gb|EDN14000.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae AM-19226] gi|227008428|gb|ACP04640.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae M66-2] gi|254847342|gb|EET25756.1| DNA-directed RNA polymerase [Vibrio cholerae MO10] Length = 1375 Score = 1638 bits (4241), Expect = 0.0, Method: Composition-based stats. Identities = 714/1366 (52%), Positives = 977/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 35 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 90 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 91 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 148 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 149 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 208 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 209 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 268 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 269 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 325 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 326 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 385 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF +++YDLSTVGR+K N + Sbjct: 386 RVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGR 445 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 446 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 505 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 506 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 565 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 566 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 625 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L PRE +D Sbjct: 626 RRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVD 685 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 686 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 745 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 746 SGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 805 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 806 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 865 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 866 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 925 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 926 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 985 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 986 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLGSIERKKWL 1032 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +++E++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1033 EQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1092 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1093 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1152 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G IS+ D+ V +A Sbjct: 1153 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNL 1209 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1210 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1269 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1270 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1329 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1330 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1375 >gi|261866784|ref|YP_003254706.1| DNA-directed RNA polymerase subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412116|gb|ACX81487.1| DNA-directed RNA polymerase, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 1342 Score = 1638 bits (4241), Expect = 0.0, Method: Composition-based stats. Identities = 707/1367 (51%), Positives = 973/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P++++IP L+ +Q S++ F+ + +GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLNIPYLLTIQIDSFEKFIKRD----PDGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++VSY+ P FDV +C R TYA PL++ LRL+ +D D G +I Sbjct: 57 FPIVSTNGNTELQYVSYQLGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDKDAAPG--TI 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +E+IL F+ KI + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEQILDLFFYKITFEIKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +K+L++ V + + ++ Sbjct: 235 NKLLMTLVPERL-RGETAAFDIETK--GKVYVERGRRITARHIKALEKDKVTQVEVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ ETGE+ A + + L ++ + + L+ + ++ YI TL Sbjct: 292 IIGKVAAKDYVDLETGELICPANMELSLELLAKLAQAGYTTLETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE++F+ LFF SD+YDLS VGR+K N L + Sbjct: 352 RVDPSNDRLSALVEIYRMMRPGEPPTKEAAEALFDNLFFSSDRYDLSAVGRMKFNRSLGI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDI++++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EETTGGGTLSNEDIVSVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+++V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLEAVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT ++ YLSA+EE IAQANS+LD+D FT+ V CR GE L E+I Sbjct: 592 RKVVNGQVTEEIEYLSAIEEGKYVIAQANSNLDDDFRFTDAFVTCRGEHGESGLYKPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIEKAVAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIV++ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V++GD V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VELGDPVERGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ ++ R+ +L + + + R++W Sbjct: 952 MQLKQAKKDLSEEFEILEAGLFMRVRNLLLSGG-------------FDAKSLDKLDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +E+ Q +E L Q+E + E + + + KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTLDNEEKQHQLEQLAEQHEELRKEFERKLEIQRNKIIQGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K I+ LR +++K G GS +S + D+ V+R+A+ Sbjct: 1119 GLAAKGIGDQINAMI---KQQQSIAKLREYMQKAYDLGGGSQKVDLSTFTDEEVMRLAQN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+PV+TPVFDGA E+ I +L + L SGQ LYDG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPVATPVFDGAHEKEIKGLLELGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV+GN + GTPESFNV++KE+++LG++IDL+ Sbjct: 1296 DDVNGRTKMYKNIVSGNQQMDPGTPESFNVIMKEIRSLGINIDLDEE 1342 >gi|81251487|gb|ABB70065.1| RpoB [Acinetobacter ursingii DSM 16037] Length = 1362 Score = 1638 bits (4241), Expect = 0.0, Method: Composition-based stats. Identities = 716/1374 (52%), Positives = 972/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG ++E+IL FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVILRALGYNNEQILDLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDITDND-GKVIVEQGKRINARHVRQMEASGLSKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + I A ++ + + ++ ++ ILY + +++ +I +TL Sbjct: 295 LYERITAEDITLKDGD--IIPANTLLSHEVMVKLAEGGVKQFNILYTNDIDHGPFIADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTSGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDI +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDITDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+DV YLSA+EE IAQA+S +D +G+ EE+V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDDVEYLSAIEEVGTVIAQADSGVDAEGNLVEEMVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++AKR G++E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEATVARDSGVCVIAKRGGVIEFVDASRVVIRVHENEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L GQ++ G K+ L+ DL+S Sbjct: 953 RALAIEKAQLDSYRKDLKEEYKIFEEAARERIVRLLKGQDSNGGGTT-KRGDKLTEDLLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPSDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ + I+ LR FL+K+ G E ++ DD V Sbjct: 1132 QILETHLGLAAKGLGEQIDKMLQQQRT---IAELRIFLDKIYNKVGGEQEDLNSLTDDEV 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L +A + GVP++TPVFDGA+E I +L +A+L +GQ IL+DG TGE FDRPVTVGY Sbjct: 1189 LVLAGNLRKGVPLATPVFDGAEESQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|27364616|ref|NP_760144.1| DNA-directed RNA polymerase subunit beta [Vibrio vulnificus CMCP6] gi|37681343|ref|NP_935952.1| DNA-directed RNA polymerase subunit beta [Vibrio vulnificus YJ016] gi|320155010|ref|YP_004187389.1| DNA-directed RNA polymerase subunit beta [Vibrio vulnificus MO6-24/O] gi|41017905|sp|Q7MGR8|RPOB_VIBVY RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|41018024|sp|Q8DD20|RPOB_VIBVU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|27360735|gb|AAO09671.1| DNA-directed RNA polymerase, beta subunit [Vibrio vulnificus CMCP6] gi|37200094|dbj|BAC95923.1| DNA-directed RNA polymerase, beta subunit [Vibrio vulnificus YJ016] gi|319930322|gb|ADV85186.1| DNA-directed RNA polymerase beta subunit [Vibrio vulnificus MO6-24/O] Length = 1342 Score = 1637 bits (4240), Expect = 0.0, Method: Composition-based stats. Identities = 713/1367 (52%), Positives = 975/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P T L ALG +EEIL TF+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPSTIILRALGKSTEEILDTFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G + + G +E G+++T+ ++ L+++GV + + + Sbjct: 235 QTLMMELVP-DRLRGETATFDIE--ANGTVYVEKGRRVTARHIRQLEKEGVDQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L ++ + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVSSKDYINEATGEIIVAANQEISLEALAKLSQAGHKQLEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RIDSSVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DDAEEQGTLDETDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA+EE IAQAN+ L+EDG+F +EL+ R GE L PRE +D Sbjct: 592 RRVVDGVVTDEVDYLSAIEEGQFVIAQANAKLNEDGTFADELITARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKAE P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKAEKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR GI++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTSVAKRGGIIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVLRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLLSGG-------------YSEAKLDTTDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ +Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDALQTQLEQLAEQYDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G I+ D+ V + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFREFLQKVYDLGETRQKVDIASLSDEEVRTLIGNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E +I +L++ L ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGASEASIKELLKLGGLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ + Sbjct: 1296 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDEQ 1342 >gi|262172574|ref|ZP_06040252.1| DNA-directed RNA polymerase beta subunit [Vibrio mimicus MB-451] gi|261893650|gb|EEY39636.1| DNA-directed RNA polymerase beta subunit [Vibrio mimicus MB-451] Length = 1341 Score = 1637 bits (4240), Expect = 0.0, Method: Composition-based stats. Identities = 712/1366 (52%), Positives = 977/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 235 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF +++YDLSTVGR+K N + Sbjct: 352 RVDSTTDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSAERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+GSF +ELV R GE L PRE +D Sbjct: 592 RRVVNGIVTDEVDYLSAIEEGQFVIAQANAKLTEEGSFADELVTARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGMIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLGSIERKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++++++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQTLENDELQTQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G I+ D+ V +A+ Sbjct: 1119 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDIAALSDEEVRTLAQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|262163610|ref|ZP_06031353.1| DNA-directed RNA polymerase beta subunit [Vibrio mimicus VM223] gi|262027977|gb|EEY46639.1| DNA-directed RNA polymerase beta subunit [Vibrio mimicus VM223] Length = 1341 Score = 1637 bits (4240), Expect = 0.0, Method: Composition-based stats. Identities = 712/1366 (52%), Positives = 978/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 235 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF +++YDLSTVGR+K N + Sbjct: 352 RVDSTTDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSAERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+GSF +ELV R GE L PRE +D Sbjct: 592 RRVVNGIVTDEVDYLSAIEEGQFVIAQANAKLTEEGSFADELVTARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGMIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLGSIERKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++++++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQTLENDELQTQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G I+ D+ V +A+ Sbjct: 1119 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDIAALSDEEVRTLAQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|113461701|ref|YP_719770.1| DNA-directed RNA polymerase subunit beta [Haemophilus somnus 129PT] gi|123031469|sp|Q0I5B7|RPOB_HAES1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|112823744|gb|ABI25833.1| DNA-directed RNA polymerase subunit beta [Haemophilus somnus 129PT] Length = 1342 Score = 1637 bits (4240), Expect = 0.0, Method: Composition-based stats. Identities = 711/1367 (52%), Positives = 970/1367 (70%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+S+ Sbjct: 1 MVYSYTEKKRIRKSFGKRPQVLNVPYLLTIQLDSFDKFIQRD----PDGQQGLEAAFRSI 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++VSY+ P FDV +C R TYA L++ LRL+ +D D +G +I Sbjct: 57 FPIVSNNGNTELQYVSYQLGEPVFDVRECQIRGTTYAASLRVKLRLVSYDKDAASG--TI 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTSNGTFVINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L AL +EEIL F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALNYTTEEILDLFFDKVSFEIKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ IE G+++T+ +K+L++ + + + ++ Sbjct: 235 NKLLMTLVPERL-RGETASFDIE--ANGKVYIERGRRITARHIKALEKDKITQVEVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGEI A I + LE++ + ++I L+ + ++ YI TL Sbjct: 292 IVGKVSAKDYVDLTTGEIICPANMEISLELLEKLSQAGYKNIETLFTNDLDFGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE +F+ LFF S++YDLS VGR+K N L + Sbjct: 352 RVDPSYDRLSALVEIYRMMRPGEPPTKEAAEGLFDNLFFSSERYDLSAVGRMKFNRSLGI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ +++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDTTGSGTLSKEDIVNVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D++SV PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLESVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT ++ YLSA+EE IAQANS+LD + FT+ V CR GE L E+I Sbjct: 592 RKVVNGQVTEEIEYLSAIEEGKYVIAQANSNLDGELRFTDAFVTCRGEHGESGLYRPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPVAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G ++ VDA RIV++ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTIQYVDASRIVVKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V++G+ + R +I+ADGPSTDLG+LALG+NM VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VQLGEPIERGEILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ +++R+ +L + + R+QW Sbjct: 952 MQLKQAKKDLVEELEILEAGLFARVRNLLLSGG-------------FNDKQLENLDRTQW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE Q +E L QYE + E + + K KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTLVDEDKQNQLEQLAEQYEELRKDFEHKLEIKRSKIIQGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K D+ LR +++K G GS +S + D+ VLR+A+ Sbjct: 1119 GLAAKGIGDQINAMI---KQKQDVEKLRGYIQKAYDLGDGSQKVDLSTFTDEEVLRLAKN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E+ I ++L + L SGQ L+DG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGMPLATPVFDGAHEKEIKALLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G + GTPESFNV++KE+++LG++IDL+ Sbjct: 1296 DDVNGRTKMYKNIVGGTHQMDPGTPESFNVIMKEIRSLGINIDLDEE 1342 >gi|262166945|ref|ZP_06034665.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae RC27] gi|262024650|gb|EEY43331.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae RC27] Length = 1341 Score = 1637 bits (4239), Expect = 0.0, Method: Composition-based stats. Identities = 715/1366 (52%), Positives = 978/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 235 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF +++YDLSTVGR+K N + Sbjct: 352 RVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L PRE +D Sbjct: 592 RRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + +S R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLSSIERKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +++E++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G IS+ D+ V +A Sbjct: 1119 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|71275247|ref|ZP_00651534.1| DNA-directed RNA polymerase, beta subunit [Xylella fastidiosa Dixon] gi|170731246|ref|YP_001776679.1| DNA-directed RNA polymerase subunit beta [Xylella fastidiosa M12] gi|226699463|sp|B0U5X7|RPOB_XYLFM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|71164056|gb|EAO13771.1| DNA-directed RNA polymerase, beta subunit [Xylella fastidiosa Dixon] gi|167966039|gb|ACA13049.1| DNA-directed RNA polymerase [Xylella fastidiosa M12] Length = 1384 Score = 1637 bits (4239), Expect = 0.0, Method: Composition-based stats. Identities = 699/1390 (50%), Positives = 966/1390 (69%), Gaps = 35/1390 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK+ I+ +P L+ +Q SY FL ++ +R + GL A KSVF Sbjct: 3 SYSFTEKKRIRKDFGKHRSILKVPFLLAIQVDSYRAFLQGDVESSQRKDIGLHGALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI ++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K++K Sbjct: 63 PIVSYSGNAALEYVGYKLGEPMFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAVK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 IKEQ +Y+G++PLMT++GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YIKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EEIL F+ + D Sbjct: 181 IIPCRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEILGEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G +S +L D G ++E+GK++T+ +K L+ G+ L + D L Sbjct: 241 KGVQLELVPERLRGEILSFNLTD--GGGVIVEAGKRITARHVKQLEASGISALAVPDDYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+++ TGE+ A ++E + + I + L+V+ ++ AY+ NTL Sbjct: 299 IGRILSHDVIDATTGELLASANSEVNEDRIVAFRKAGIESVGTLWVNDLDRGAYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D + + +A ++IYR+MRPG+ T A+++F+ LFF D+YDLS VGR+K N R+ Sbjct: 359 IDPTRTQLEAQVEIYRMMRPGEPPTKEAAQNLFHNLFFTFDRYDLSMVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + + +IK L ++RNG+G +DDID+LGN Sbjct: 419 EVAGEPVLYDKKYFSDRNDEESRRLVSKLGETSDILDVIKGLCEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RRLSALG GG+ R RAG E+RDVH +HYG +C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHLSHYGCLCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV +G+VT++V YLSA+EE IAQAN+ D++G T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVVEGRVTDEVEYLSAIEENQYVIAQANTLTDDNGQLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E V CR GE +L P + ++D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 ESFVPCRFQGESLLKPPSYVHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+A+ P VGTG+E VA SG + A+R G+++QVDA RIV++ E + + +GVD Sbjct: 719 PTLRAQKPLVGTGIERTVALDSGVTVNARRGGVIDQVDAGRIVVKVNESEIIGATDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYGLIKYTRSNQNTCINQRPLVNVGDIIASGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLG EEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCIARDTKLGSEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDILVGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ SG Sbjct: 959 DVQVFTRDGIEKDKRAHQIEEYEIKRVKKDFDDQFRILEGAIYARLRSQIVGKVVNSGVD 1018 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK V++ + +S W+ ++DE ++ + Q + + + RF +K KI Sbjct: 1019 -IKKGEVITGPYLDGLKKSDWFALRMKDEVAVEAIDRAQKQIQAYQKEFDQRFSDKRSKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG++S I+P EDMPF++DGTPVDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRCIQCGDKMAGRHGNKGVISNIVPVEDMPFMEDGTPVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG- 1179 VLNPLGVPSRMN+GQI E HLGWA GLG +I+ ++ +AN I+ LR FL ++ Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGHRIQRML---EANAAIADLRKFLNEIYNHDK 1194 Query: 1180 ---SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + DD +L +A+ GVP+++PVFDGA E+ I ML +A+L GQ+ L Sbjct: 1195 SLVGERVDLSQFSDDELLNMAKNLTDGVPMASPVFDGASEQEIKRMLDLAELPTGGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGEPFDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGHTGEPFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G+ G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGDHQMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLENS 1366 L ++I+LE++ Sbjct: 1375 LAINIELEDN 1384 >gi|261491916|ref|ZP_05988493.1| DNA-directed RNA polymerase subunit beta [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312383|gb|EEY13509.1| DNA-directed RNA polymerase subunit beta [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 1341 Score = 1637 bits (4239), Expect = 0.0, Method: Composition-based stats. Identities = 705/1366 (51%), Positives = 966/1366 (70%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q S++ F+ + +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +GA L++VSYE P FDV +C R TYA PL++ LRL+ +D + G ++ Sbjct: 57 FPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFEKIKFEIAD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ +++L++ V + + + Sbjct: 235 NKLLMTLVPERL-RGETASFDI--AANGKVYVEMGRRITARHIRALEKDNVAQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ +GE+ A I + L + + I +L+ + +++ YI TL Sbjct: 292 IVGKVAAQDYVDLSSGEVICPANMEISMEMLANLSQAGYNQIEVLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ +FF +++YDLS VGR+K N L + Sbjct: 352 RVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSAERYDLSAVGRMKFNRSLEI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DII ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGVGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +G+VT ++ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E++ Sbjct: 592 RKVVNGQVTEEIEYLSAIEESNNIIAQANSNLDENFRFTDTYVTCRQQGESGLFKPEEVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 YMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG AIVAKR G V+ VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P V Sbjct: 712 SGVAIVAKRGGTVQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQVPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+I Sbjct: 772 NLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R+ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E IL+ +++R+ +L G K+S + R +W Sbjct: 952 QLCEAKKDLAEELEILEAGLFTRVRNLLI-------EGGVKESA------LDGVAREKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A+KR Sbjct: 999 EQTLEDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G +I +I K +++ LR +++K G GS +S + D+ V+R+A+ Sbjct: 1119 LAARGIGDQIDKMI---KQQQEVAKLREYMQKAYDLGHGSQVVDLSTFSDEEVMRLAQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E I +L + L SGQ LYDG TGE F+RPVTVGY+YMLKLN Sbjct: 1176 RKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G E G PESFNV+ KE++AL + ++L+ + Sbjct: 1296 DVNGRTKMYKNIVDGTHYMEPGIPESFNVITKEIRALAIDMELDEA 1341 >gi|158514189|sp|A4SHU9|RPOB_AERS4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1342 Score = 1637 bits (4239), Expect = 0.0, Method: Composition-based stats. Identities = 697/1364 (51%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK +++D P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEAD----PEGEYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPIT++SG+A L++VSY P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPITSYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD + VRIDRRRK+P + L AL SEEIL+ F+ I + + Sbjct: 175 RVIPYRGSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFSSEEILANFFETIGFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + +V G V+E+G+++T+ ++ L++ V + + + Sbjct: 235 GKLMMDLVPERL-RGETATFDIV--ANGAVVVETGRRVTARHIRQLEKDAVTQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A++ + +TGE+ + A + +++ + + + +L+ + +++ AY+ TL Sbjct: 292 VVGKVAAKNYTHPQTGEMVVTANQALSLEAVANLSQAGFKHFEVLFTNELDHGAYMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + R +AL++IYR+MRPG+ T AE +F LFF S++YDLSTVGR+K N RL+ Sbjct: 352 RIDSSSSRLEALVEIYRMMRPGEPPTREAAEQLFENLFFSSERYDLSTVGRMKFNRRLSR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + K+DI+ ++K L+D+RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDETGAGTLTKDDIVEVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ ++R N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYSRTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T++V YLSA+EE IAQAN++ EDG +EL+ CR GE + ++I Sbjct: 592 RKVIDGVITDEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHKGESTFMNADQIQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSPQQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+++ VDA RIVI+ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTVVAKRGGMIDYVDASRIVIKVNEDELLPGEAGIDIYSLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V D++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDS+L++ER+V ED T+I Sbjct: 772 MLGEPVMAGDVVADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILVNERVVQEDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 832 HIQELACISRDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GV GTVVDV++F R G++K++R+ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGVEKDKRAKEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ I+ R +L S D +++ R++W+ Sbjct: 952 QLKEAKKDLTEEFKILEDGIFGRSRNLLLAAG-------------YSEDRLNKLDRTKWF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + A++DE Q +E + Q+ K+ + +F+NK KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELAIEDEAKQIELEQIAEQHIELKADFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKICPVEDMPHDEYGRPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +I + +A ++ + + + I++ DD V + + Sbjct: 1119 LAAKGIGEKIDRMIKEQRALHEMRDFLQQVYDLGEKDTKQVDIAELSDDDVRTLVGNLRK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+PV+TPVFDGA E I ++L++ADL ESGQ L+DG TG F+R VTVGY+YMLKLNH+ Sbjct: 1179 GLPVATPVFDGAKEHEIKALLKLADLPESGQISLFDGRTGNVFERKVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+L+ Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELDEE 1342 >gi|330432333|gb|AEC17392.1| DNA-directed RNA polymerase subunit beta [Gallibacterium anatis UMN179] Length = 1345 Score = 1637 bits (4239), Expect = 0.0, Method: Composition-based stats. Identities = 701/1370 (51%), Positives = 968/1370 (70%), Gaps = 28/1370 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P++++IP L+ +Q S++ F+ + +GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLNIPYLLTIQIDSFEKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y+ P FDV +C R TYA PL++ LRL+ +D D G ++ Sbjct: 57 FPIVSNNGNTELQYVDYKLGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDKDAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQDVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKILYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KIV+ + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFEKIVFEIKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L D + G + + G+ +E G+++T+ ++ L++ GV + + + Sbjct: 235 NQLLMTLVP-DRLRGETATFDIE--ANGKVYVERGRRITARHIRQLEKDGVTQVVVPPEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TG+I A + + L + + I L+ + ++ YI TL Sbjct: 292 IVGKVAAKDYVDLTTGDIICPANAELSLELLANLSQAGYNTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE +F+ LFF SD+YDLS VGR+K N L++ Sbjct: 352 RVDPSYDRLSALVEIYRMMRPGEPPTKEAAEGLFDNLFFSSDRYDLSAVGRMKFNRSLDI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDII ++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGTGILSKEDIILVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+DSV PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDSVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT ++ YLSA+EE N IAQANS+LDE+ FT+ V R GE L E+I Sbjct: 592 RKVVNGQVTEEIEYLSAIEEGNYVIAQANSNLDENFRFTDTFVTARGEHGESGLYRPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +Q+VS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+++ P VGTG+E VA Sbjct: 652 QYMDISTQQIVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRSDKPLVGTGIEKAVAV 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG +VAKR G ++ +DA RIV++ E + P +G+DIY L K+ RSNQNTC+NQ P Sbjct: 712 DSGVTVVAKRGGYIQYIDASRIVVKVNEDETIPGEAGIDIYNLTKYTRSNQNTCINQVPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ + R +++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VSLGEPIGRGEVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 832 IHIQELSCIARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ +GTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSTTGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D E IL+ +++R+ +L S+D + + R +W Sbjct: 952 MQLKQAKKDLTAELDILEAGLFTRVRNLLLANG-------------FSADKLEQMDRMKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + ++ DE+ Q +E L Q + + + + + K KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQSLADEEKQAQLEQLSEQLDELRKEFDHKLEVKRNKIIQGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGQPVDIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G+A G+G +I +I K +++ LR +++K G +S + D+ V+R+A+ Sbjct: 1119 GFAAKGIGDQINRMI---KEKQEVAKLREYIQKAYDLGDACQKVDLSTFTDEEVMRLAQN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA+E+ I +L +A L SGQ LYDG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPLATPVFDGAEEKEIKGLLELAGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 DDV GRT++Y++IV G + PESFNVL+KE+++L ++IDL++ + + Sbjct: 1296 DDVNGRTKMYKNIVDGTHQMDPSMPESFNVLLKEIRSLAINIDLDDEQAE 1345 >gi|261496280|ref|ZP_05992685.1| DNA-directed RNA polymerase subunit beta [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308111|gb|EEY09409.1| DNA-directed RNA polymerase subunit beta [Mannheimia haemolytica serotype A2 str. OVINE] Length = 1341 Score = 1637 bits (4238), Expect = 0.0, Method: Composition-based stats. Identities = 705/1366 (51%), Positives = 966/1366 (70%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q S++ F+ + +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +GA L++VSYE P FDV +C R TYA PL++ LRL+ +D + G ++ Sbjct: 57 FPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFEKIKFEIAD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ +++L++ V + + + Sbjct: 235 NKLLMTLVPERL-RGETASFDI--AANGKVYVEMGRRITARHIRALEKDNVTQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ +GE+ A I + L + + I +L+ + +++ YI TL Sbjct: 292 IVGKVAAQDYVDLSSGEVICPANMEISMEMLANLSQAGYNQIEVLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ +FF +++YDLS VGR+K N L + Sbjct: 352 RVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSAERYDLSAVGRMKFNRSLEI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DII ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGVGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +G+VT ++ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E++ Sbjct: 592 RKVVNGQVTEEIEYLSAIEESNNIIAQANSNLDENFRFTDTYVTCRQQGESGLFKPEEVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 YMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG AIVAKR G V+ VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P V Sbjct: 712 SGVAIVAKRGGTVQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQVPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+I Sbjct: 772 NLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R+ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E IL+ +++R+ +L G K+S + R +W Sbjct: 952 QLCEAKKDLAEELEILEAGLFTRVRNLLI-------EGGVKESA------LDGVAREKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A+KR Sbjct: 999 EQTLEDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G +I +I K +++ LR +++K G GS +S + D+ V+R+A+ Sbjct: 1119 LAARGIGDQIDKMI---KQQQEVAKLREYMQKAYDLGHGSQVVDLSTFSDEEVMRLAQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E I +L + L SGQ LYDG TGE F+RPVTVGY+YMLKLN Sbjct: 1176 RKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G E G PESFNV+ KE++AL + ++L+ + Sbjct: 1296 DVNGRTKMYKNIVDGTHYMEPGIPESFNVITKEIRALAIDMELDEA 1341 >gi|253995711|ref|YP_003047775.1| DNA-directed RNA polymerase subunit beta [Methylotenera mobilis JLW8] gi|253982390|gb|ACT47248.1| DNA-directed RNA polymerase, beta subunit [Methylotenera mobilis JLW8] Length = 1390 Score = 1637 bits (4238), Expect = 0.0, Method: Composition-based stats. Identities = 697/1397 (49%), Positives = 951/1397 (68%), Gaps = 40/1397 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +IP L+ +Q SY FL N+ D+R GLQ+ F SV Sbjct: 1 MSYSFTEKKRLRKSFAKRESVQEIPYLLAMQLESYAAFLQTNVPADQRTETGLQSTFSSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A L++VSY+ FDV +C R LTYA PL++ +RL + D ++ Sbjct: 61 FPIVSHSGNARLDYVSYQLGAEPFDVKECQQRGLTYAAPLRVRVRLTIMDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG+LPLMT++G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGELPLMTENGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+PVT L ALG E+I+STFY + Sbjct: 179 RIIPYRGSWLDFEFDPKDYLYFRIDRRRKMPVTILLKALGYTPEQIISTFYDFDTFHISK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 F + L G ++ G ++ K++T ++ +++ GV + + D Sbjct: 239 SGVEFTVVPERL-RGEVAKFDIL-AKDGSVIVAKDKRITVKHIRDMEKAGVSEIAVPQDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A IV+ ETGE+ A D + E L ++ + IR + LY + +++ YI TL Sbjct: 297 ILGRALANTIVDQETGEVVANANDEVTESLLGKLVDANIRTVSTLYSNDLDHGDYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++F LFF ++YDLS VGR+K N R Sbjct: 357 RIDEIPDQYSARVAIYRMMRPGEPPTEESVEALFQGLFFSEERYDLSRVGRMKFNRRAFP 416 Query: 423 DT--------------------PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNR 462 + + + EDI+A+I +L++LRNG+G IDDID+LGNR Sbjct: 417 EKAEERQSNWIRRFYEAVGVQGDEGANTLSNEDILAVIGVLLELRNGRGEIDDIDHLGNR 476 Query: 463 RVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQL 522 R+RSVGE+ +NQ+R GL+R+ER++KER+S + D++MP DLINAKPV SA+ EFF SSQL Sbjct: 477 RIRSVGELAENQFRTGLVRVERAVKERLSQAESDNLMPHDLINAKPVSSAIREFFGSSQL 536 Query: 523 SQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGL 582 SQ + N LS ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL Sbjct: 537 SQFMDQTNPLSEITHKRRISALGPGGLTRERAGFEVRDVHSTHYGRVCPIETPEGPNIGL 596 Query: 583 VSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE 642 ++SL +AR N YGF+ETPYR+V KV++ + YLSA+EE IAQAN+ LD F + Sbjct: 597 INSLALYARTNEYGFLETPYRRVDANKVSDTIDYLSAIEESQYMIAQANTDLDTKNLFVD 656 Query: 643 ELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP 702 +L+ R E + +++ ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP Sbjct: 657 DLISSRHHNEFTMTQPDRVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVP 716 Query: 703 LLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 L+AE VGTG+E VA SG + A+R G+V+ VD+ RIVIR + + GVDIY Sbjct: 717 CLRAEKAVVGTGIERTVAVDSGTVVTARRGGLVDYVDSARIVIRVNDEEAKAGEVGVDIY 776 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 L K+ RSNQNT +NQRPLVKVGD++ R D+IADG STD+G+LALG+NMLV FMPW+GYN Sbjct: 777 NLTKYTRSNQNTNINQRPLVKVGDKLARGDVIADGASTDMGELALGQNMLVGFMPWNGYN 836 Query: 823 FEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGII 882 +EDS+LISER+V++D +TSIHIEE V+ARDTKLG EEIT+DI N+SE L +DE GII Sbjct: 837 YEDSILISERVVADDRYTSIHIEELSVVARDTKLGAEEITQDISNLSERMLARLDEVGII 896 Query: 883 CVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDV 942 +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV Sbjct: 897 HIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDV 956 Query: 943 RIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 ++F R GID++ R+ + +Q+ +D D+ I++ + + R+ ++ G+ A GP Sbjct: 957 QVFTREGIDRDARAQQIIDDQLAHYKQDLADQMRIVEDDAFGRIRRLIEGKVATGGPNKL 1016 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 KK L+++ + R W+ + DE+ R +E LK ++ ++RF+ K K+ Sbjct: 1017 KKGEALTAEYLESVGRYDWFDIRLSDEEAARQLEQLKDSLSQARIEFDNRFEEKKRKLTQ 1076 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++PPGV ++VKV++A+KR IQ GDKMAGRHGNKG++S+I P EDMP + DGTP+DIVL Sbjct: 1077 GDELPPGVQKMVKVYLAVKRRIQPGDKMAGRHGNKGVISKICPVEDMPHMADGTPLDIVL 1136 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG-SH 1181 NPLGVPSRMN+GQI E HLGWA GLG +I+ ++ + ++ +R FLEK+ Sbjct: 1137 NPLGVPSRMNIGQILEVHLGWAAKGLGLRIEEML---REESKVAEIRKFLEKIYNDSTGK 1193 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG--------- 1232 E I + D +L +A+ K GVP +TPVFDGA E I +ML +A D+ Sbjct: 1194 HEDIKSFTDAEILDLAQNLKRGVPFATPVFDGAAESDIKAMLDLAFPDDDARTKQLQFHA 1253 Query: 1233 ---QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNR 1289 Q L+DG TG+ F+RPVTVGY+++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 GKTQVTLFDGRTGDKFERPVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQF 1313 Query: 1290 GGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV GRT+VYE+IV G + G PESFNV Sbjct: 1314 GGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVTGRTKVYENIVKGEHKIDAGMPESFNV 1373 Query: 1350 LVKEMQALGLSIDLENS 1366 LVKE+++L + IDL+ + Sbjct: 1374 LVKEIRSLAIDIDLDRN 1390 >gi|303256441|ref|ZP_07342455.1| DNA-directed RNA polymerase, beta subunit [Burkholderiales bacterium 1_1_47] gi|331000382|ref|ZP_08324062.1| DNA-directed RNA polymerase, beta subunit [Parasutterella excrementihominis YIT 11859] gi|302859932|gb|EFL83009.1| DNA-directed RNA polymerase, beta subunit [Burkholderiales bacterium 1_1_47] gi|329572088|gb|EGG53757.1| DNA-directed RNA polymerase, beta subunit [Parasutterella excrementihominis YIT 11859] Length = 1377 Score = 1637 bits (4238), Expect = 0.0, Method: Composition-based stats. Identities = 688/1377 (49%), Positives = 962/1377 (69%), Gaps = 15/1377 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P ++++P L+E Q SY FL ++ ER +EGLQ AFKS+ Sbjct: 1 MSYSFTEKKRIRKSFAKRPSVLEVPSLLETQLHSYHEFLQADVPAAERRDEGLQGAFKSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEF Y D P FDV +C R L Y L+ +RL++FD D+ + ++ Sbjct: 61 FPIVSHNGLARLEFQEYILDDPVFDVSECQLRGLNYCSRLRAKVRLVIFDRDQPKQS-TV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+I+E +YMG++PLMTK G+F+I G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 120 KEIRESEVYMGEIPLMTKKGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+H RIDRRRK+P T L ALGM E IL FY Y+ Sbjct: 180 RIIPYRGSWLDFEFDAKDILHFRIDRRRKMPGTIMLKALGMTPESILKQFYEFDHYTLTQ 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + + L G + + D + G+ ++ K++ + ++ +++ G+ L + D Sbjct: 240 DGATLEIIPSRL-RGEIAAFDIKDPE-GKVIVAKDKRINARHVREIEKLGITELPVPLDN 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A ++ + ++GE+ A D I + LE+I I LY++ +N YI +TL Sbjct: 298 LIGKVIATNLYDEDSGEVVANANDEITPELLEKIREHGIDSFDTLYINELNRGPYISDTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++F LFFD + YDLS VGR+K+N R N Sbjct: 358 RLDETPDQLSARIAIYRMMRPGEPPTEEAVETLFRRLFFDPETYDLSRVGRMKINSRFNR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 T + EDII +K +V LRNG+G +DDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 418 GTETGPMTLEPEDIIDTMKAIVQLRNGEGQVDDIDHLGNRRVRCVGELTENQFRSGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+ + D++MP DLIN+KP+ +A+ +FF SSQLSQ + N LS ITH RR+S Sbjct: 478 ERAVRERLGQAESDNLMPHDLINSKPISAAIRDFFGSSQLSQFMDQTNPLSEITHKRRIS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNDYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VTN++ YLSA++E N IAQAN+S+D+ G+ ++ELV CR GE +L+ E++ Sbjct: 598 RKVIDGHVTNEIAYLSAIDEGNYIIAQANASIDDKGNLSDELVSCRDKGEFVLMRPERVQ 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQ VP L+ E P VGTG+E VA Sbjct: 658 YMDVAPAQIVSVAASLIPFLEHDDANRALMGSNMQRQGVPCLRPEKPVVGTGIERTVAVD 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A+R G+V+ VDA RIV+R + + P GVDIY L KF RSNQ T +NQRP+V Sbjct: 718 SGTTVQAERGGVVDYVDANRIVVRVNDEENVPGRVGVDIYNLQKFTRSNQGTNINQRPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 GD + + D+IADG STDLG+LALG+NM+VAFMPW+GYN+EDS+++SE++V++D ++SI Sbjct: 778 NPGDHIAKGDVIADGASTDLGELALGQNMIVAFMPWNGYNYEDSVMVSEKVVADDRYSSI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V ARDTKLG EEITRDI N+SE + +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 838 HIEELSVQARDTKLGSEEITRDISNLSENQINRLDESGIVYIGAEVKAGDVLVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R GI++++R+ S+ + Sbjct: 898 ETTLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIERDKRAQSIIDD 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ + +D+ I++R+ + RL L G A GP G K ++ + + +W+ Sbjct: 958 ELKRYRTNLNDQLRIVERDAFERLARQLIGNVAQGGPDGLGKGKKVTKEYLDGLNVHKWF 1017 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE++Q+ +E +++ E + ++ + K +K+ GD++P GV ++VKV++A+KR Sbjct: 1018 DIRMADEELQKQIEEVRISLEAKRKEFDEAWNEKRKKLTQGDELPTGVQKMVKVYLAVKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VSRI EDMPF+ DG PVDIVLNPLGVPSRMN+GQ+ E HLG Sbjct: 1078 RLQPGDKMAGRHGNKGVVSRITRVEDMPFMADGRPVDIVLNPLGVPSRMNIGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQWK 1201 WA GLG +I ++ ++ + ++ +R FL + + E DD ++ +A+ K Sbjct: 1138 WAAFGLGWRIAEML-KHERSKQVAEIREFLNTIYNKSSGKKEDFDSLTDDEIIDLAKHLK 1196 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQ----------SILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA E I ML +A +E+ + + L+DG TG+ FDRPVTV Sbjct: 1197 KGVPFATPVFDGASESDIREMLNLAFPEETAKKLHLTPSKTQAQLFDGRTGDAFDRPVTV 1256 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G ++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1257 GVMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1316 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 QEMLT+KSDDV GRT++YE+IV G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 1317 QEMLTVKSDDVTGRTKLYENIVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRDKE 1373 >gi|145635405|ref|ZP_01791107.1| DNA-directed RNA polymerase beta subunit [Haemophilus influenzae PittAA] gi|145267411|gb|EDK07413.1| DNA-directed RNA polymerase beta subunit [Haemophilus influenzae PittAA] Length = 1343 Score = 1637 bits (4238), Expect = 0.0, Method: Composition-based stats. Identities = 707/1365 (51%), Positives = 967/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFHSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLSA++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKLDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINAMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN E GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMEPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|78099460|gb|ABB20866.1| RNA polymerase subunit B [Acinetobacter schindleri] Length = 1362 Score = 1637 bits (4238), Expect = 0.0, Method: Composition-based stats. Identities = 714/1374 (51%), Positives = 969/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLILKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG ++E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNMFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G++ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDIADKD-GKIIVEQGKRINARHVRQMEASGLEKLAVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + G++ A V+ + + +I ++ +L+ + ++ ++I +TL Sbjct: 295 LYERITAEDIQLKD-GDVIA-ANTVLSHEIMVKIAEGGVKQFNLLFTNDIDRGSFIADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DI ++K LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNDDITDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKCNN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S++D+DG+ TEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSAIDKDGNLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RIPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA SG ++AKR G +E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVAHDSGVCVIAKRGGRIEYVDASRVVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVNMGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIIRLLKGQESNGGGTT-KRGDKLSEDVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLDIQPVDEAIAERLTQIQVFLKEKSLEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI ++ + + + LR FL+K+ G E + DD + Sbjct: 1132 QILETHLGMAAKGLGDKIDKMLQEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDDEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ + GVP++TPVFDGA+E I +L + + +GQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LALSGNLRKGVPLATPVFDGAEESQIKELLELGGISRTGQTVLYDGRTGERFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|254361140|ref|ZP_04977284.1| DNA-directed RNA polymerase subunit beta [Mannheimia haemolytica PHL213] gi|153092631|gb|EDN73680.1| DNA-directed RNA polymerase subunit beta [Mannheimia haemolytica PHL213] Length = 1341 Score = 1637 bits (4238), Expect = 0.0, Method: Composition-based stats. Identities = 705/1366 (51%), Positives = 966/1366 (70%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q S++ F+ + +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +GA L++VSYE P FDV +C R TYA PL++ LRL+ +D + G ++ Sbjct: 57 FPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFEKIKFEIAD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ +++L++ V + + + Sbjct: 235 NKLLMTLVPERL-RGETASFDI--AANGKVYVEMGRRITARHIRALEKDNVTQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ +GE+ A I + L + + I +L+ + +++ YI TL Sbjct: 292 IVGKVAAQDYVDLSSGEVICPANMEISMEMLANLSQAGYNQIEVLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ +FF +++YDLS VGR+K N L + Sbjct: 352 RVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSAERYDLSAVGRMKFNRSLEI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DII ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGVGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +G+VT ++ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E++ Sbjct: 592 RKVVNGQVTEEIEYLSAIEESNNIIAQANSNLDENFRFTDTYVTCRQQGESGLFKPEEVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 YMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG AIVAKR G V+ VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P V Sbjct: 712 SGVAIVAKRGGTVQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQVPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+I Sbjct: 772 NLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R+ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E IL+ +++R+ +L G K+S + R +W Sbjct: 952 QLCEAKKDLAEELEILEAGLFTRVRNLLI-------EGGVKESA------LDGVAREKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A+KR Sbjct: 999 EQTLEDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G +I +I K +++ LR +++K G GS +S + D+ V+R+A+ Sbjct: 1119 LAAHGIGDQIDKMI---KQQQEVAKLREYMQKAYDLGHGSQVVDLSTFSDEEVMRLAQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E I +L + L SGQ LYDG TGE F+RPVTVGY+YMLKLN Sbjct: 1176 RKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G E G PESFNV+ KE++AL + ++L+ + Sbjct: 1296 DVNGRTKMYKNIVDGTHYMEPGIPESFNVITKEIRALAIDMELDEA 1341 >gi|170718704|ref|YP_001783895.1| DNA-directed RNA polymerase subunit beta [Haemophilus somnus 2336] gi|189043858|sp|B0URZ6|RPOB_HAES2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|168826833|gb|ACA32204.1| DNA-directed RNA polymerase, beta subunit [Haemophilus somnus 2336] Length = 1342 Score = 1636 bits (4237), Expect = 0.0, Method: Composition-based stats. Identities = 712/1367 (52%), Positives = 971/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+S+ Sbjct: 1 MVYSYTEKKRIRKSFGKRPQVLNVPYLLTIQLDSFDKFIQRD----PDGQQGLEAAFRSI 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++VSY+ P FDV +C R TYA L++ LRL+ +D D +G +I Sbjct: 57 FPIVSNNGNTELQYVSYQLGEPVFDVRECQIRGTTYAASLRVKLRLVSYDKDAASG--TI 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTSNGTFVINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L AL +EEIL F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALNYTTEEILDLFFDKVSFEIKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ IE G+++T+ +K+L++ + + + ++ Sbjct: 235 NKLLMTLVPERL-RGETASFDIE--ANGKVYIERGRRITARHIKALEKDKITQVEVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGEI A I + LE++ + ++I L+ + ++ YI TL Sbjct: 292 IVGKVSAKDYVDLTTGEIICPANMEISLELLEKLSQAGYKNIETLFTNDLDFGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE +F+ LFF S++YDLS VGR+K N L + Sbjct: 352 RVDPSYDRLSALVEIYRMMRPGEPPTKEAAEGLFDNLFFSSERYDLSAVGRMKFNRSLGI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ +++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDTTGSGTLSKEDIVNVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D++SV PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLESVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT ++ YLSA+EE IAQANS+LD + FT+ V CR GE L E+I Sbjct: 592 RKVVNGQVTEEIEYLSAIEEGKYVIAQANSNLDNELRFTDAFVTCRGEHGESGLYRPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPVAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G ++ VDA RIV++ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTIQYVDASRIVVKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V++G+ + R +I+ADGPSTDLG+LALG+NM VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VQLGEPIERGEILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ +++R+ +L + + R+QW Sbjct: 952 MQLKQAKKDLVEELEILEAGLFARVRNLLLSGG-------------FNDKQLENLDRTQW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE Q +E L QYE + E + + K KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTLVDEDKQNQLEQLAEQYEELRKDFEHKLEIKRSKIIQGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K D+ LR +++K G GS +S + D+ VLR+A+ Sbjct: 1119 GLAAKGIGDQINAMI---KQKQDVEKLRGYIQKAYDLGDGSQKVDLSTFTDEEVLRLAKN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E+ I ++L + L SGQ IL+DG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGMPLATPVFDGAHEKEIKALLELGGLPTSGQIILFDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G + GTPESFNV++KE+++LG++IDL+ Sbjct: 1296 DDVNGRTKMYKNIVGGTHQMDPGTPESFNVIMKEIRSLGINIDLDEE 1342 >gi|262375148|ref|ZP_06068382.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter lwoffii SH145] gi|262310161|gb|EEY91290.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter lwoffii SH145] Length = 1362 Score = 1636 bits (4237), Expect = 0.0, Method: Composition-based stats. Identities = 711/1374 (51%), Positives = 974/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPSVMDAPYLLAIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLILKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG +E IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYSNENILNMFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E GK++ + ++ ++ G++ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDILDKD-GKAIVEQGKRINARHVRQMEASGLEKLAVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AED + + G++ A V+ + + +I ++ IL+ + ++ +++ ++L Sbjct: 295 LYERITAED-IPLKDGDVIA-ANTVLSHEIMVKIAEGGVKQFNILFTNDIDRGSFVADSL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTSNREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDI ++K LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDITDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKCNN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S++D+DG+ TEE V R G+ + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSAMDKDGNLTEEFVSVRHQGDFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RIPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA SG ++A+R G +E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVAHDSGVCVIAQRGGRIEFVDASRVVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEFKIFEEAARERVIRLLNGQESNGGGTT-KRGDKLSEDVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPVDEAIAERLTQIQVFLKEKSFEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG +I ++ + + + LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGMAAKGLGDQIDKMMKEQRT---VLELRDFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L+++ ++GVP++TPVFDGA+E I +L++A L +GQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LKLSGNLRAGVPLATPVFDGAEEGQIKELLQLAGLSSTGQTVLYDGRTGERFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|71899985|ref|ZP_00682131.1| DNA-directed RNA polymerase, beta subunit [Xylella fastidiosa Ann-1] gi|71730272|gb|EAO32357.1| DNA-directed RNA polymerase, beta subunit [Xylella fastidiosa Ann-1] Length = 1384 Score = 1636 bits (4237), Expect = 0.0, Method: Composition-based stats. Identities = 698/1390 (50%), Positives = 967/1390 (69%), Gaps = 35/1390 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK+ I+ +P L+ +Q SY FL ++ +R + GL A KSVF Sbjct: 3 SYSFTEKKRIRKDFGKHRSILKVPFLLAIQVDSYRAFLQGDVESSQRKDIGLHGALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI ++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K++K Sbjct: 63 PIVSYSGNAALEYVGYKLGEPMFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAVK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 IKEQ +Y+G++PLMT++GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YIKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EEIL F+ + D Sbjct: 181 IIPCRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEILGEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G +S +L D G ++E+GK++T+ +K L+ G+ L + + L Sbjct: 241 EGVQLELVPERLRGEILSFNLTD--GGGVIVEAGKRITARHVKQLEASGISALAVPDEYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+++ TGE+ A ++E + + I + L+V+ ++ AY+ NTL Sbjct: 299 IGRILSHDVIDATTGELLASANSEVNEDRIVAFRKAGIESVGTLWVNDLDRGAYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D + + +A ++IYR+MRPG+ T A+++F+ LFF D+YDLS VGR+K N R+ Sbjct: 359 IDPTRTQLEAQVEIYRMMRPGEPPTKEAAQNLFHNLFFTFDRYDLSMVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + + +IK L ++RNG+G +DDID+LGN Sbjct: 419 EVAGEPVLYDKKYFSDRNDEESRRLVSKLGETSDILDVIKGLCEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RRLSALG GG+ R RAG E+RDVH +HYG +C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHLSHYGCLCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV +G+VT++V YLSA+EE IAQAN+ D++G T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVVEGRVTDEVEYLSAIEENQYVIAQANTLTDDNGQLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E V CR GE +L P + ++D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 ESFVPCRFQGESLLKPPSYVHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+A+ P VGTG+E VA+ SG + A+R G+++QVDA RIV++ E + + +GVD Sbjct: 719 PTLRAQKPLVGTGIERTVARDSGVTVNARRGGVIDQVDAGRIVVKVNESEIIGATDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD V D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYGLIKYTRSNQNTCINQRPLVNVGDIVASGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLG EEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCIARDTKLGSEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDILVGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ SG Sbjct: 959 DVQVFTRDGIEKDKRAHQIEEYEIKRVKKDFDDQFRILEGAIYARLRSQIVGKVVNSGVD 1018 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK V++ + +S W+ ++DE ++ + Q + + + RF +K KI Sbjct: 1019 -IKKGEVITDPYLDGLKKSDWFALRMKDEVAVEAIDRAQKQIQAYQKEFDQRFSDKRSKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG++S ++P EDMPF++DGTPVDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRCIQCGDKMAGRHGNKGVISNVVPVEDMPFMEDGTPVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG- 1179 VLNPLGVPSRMN+GQI E HLGWA GLG +I+ ++ +AN I+ LR FL ++ Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGHRIQRML---EANAAIADLRKFLNEIYNHDK 1194 Query: 1180 ---SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + DD +L +A+ GVP+++PVFDGA E+ I ML +A+L GQ+ L Sbjct: 1195 SLVGERVDLSQFSDDELLNMAKNLTDGVPMASPVFDGASEQEIKRMLDLAELPTGGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGEPFDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGHTGEPFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G+ G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGDHQMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLENS 1366 L ++I+LE++ Sbjct: 1375 LAINIELEDN 1384 >gi|229506877|ref|ZP_04396385.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae BX 330286] gi|229508682|ref|ZP_04398176.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae B33] gi|229512395|ref|ZP_04401870.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae TMA 21] gi|229516064|ref|ZP_04405515.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae RC9] gi|229519866|ref|ZP_04409299.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae TM 11079-80] gi|229606391|ref|YP_002877039.1| DNA-directed RNA polymerase subunit beta [Vibrio cholerae MJ-1236] gi|255747129|ref|ZP_05421072.1| DNA-directed RNA polymerase beta subunit [Vibrio cholera CIRS 101] gi|262149005|ref|ZP_06028150.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae INDRE 91/1] gi|41019520|sp|Q9KV30|RPOB_VIBCH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|229343107|gb|EEO08092.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae TM 11079-80] gi|229346967|gb|EEO11934.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae RC9] gi|229350610|gb|EEO15555.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae TMA 21] gi|229354317|gb|EEO19246.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae B33] gi|229355982|gb|EEO20901.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae BX 330286] gi|229369046|gb|ACQ59469.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae MJ-1236] gi|255735178|gb|EET90580.1| DNA-directed RNA polymerase beta subunit [Vibrio cholera CIRS 101] gi|262031195|gb|EEY49814.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae INDRE 91/1] Length = 1341 Score = 1636 bits (4237), Expect = 0.0, Method: Composition-based stats. Identities = 714/1366 (52%), Positives = 977/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 235 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF +++YDLSTVGR+K N + Sbjct: 352 RVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L PRE +D Sbjct: 592 RRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLGSIERKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +++E++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G IS+ D+ V +A Sbjct: 1119 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|222112411|ref|YP_002554675.1| DNA-directed RNA polymerase subunit beta [Acidovorax ebreus TPSY] gi|254765287|sp|B9MH47|RPOB_ACIET RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|221731855|gb|ACM34675.1| DNA-directed RNA polymerase, beta subunit [Acidovorax ebreus TPSY] Length = 1374 Score = 1636 bits (4237), Expect = 0.0, Method: Composition-based stats. Identities = 696/1379 (50%), Positives = 968/1379 (70%), Gaps = 18/1379 (1%) Query: 1 MAKG--VVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAA 58 MA+ + R+RK FG ++ +P L+++Q+ +Y FL + AP +R EGLQAA Sbjct: 1 MAQTSTYSYTERKRIRKSFGSRDSVLKVPYLLQMQRDAYTAFLQADTAPQKRSIEGLQAA 60 Query: 59 FKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 F S FPI + +G ++FV Y P FDV +C R LT+A ++ ++LI++D + T Sbjct: 61 FNSAFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTS 120 Query: 119 -AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 +K +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGK Sbjct: 121 QSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGK 180 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIV 237 LL++ RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G++ E IL+ F+ Sbjct: 181 LLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDN 240 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 + L G + D G+ ++ K++T+ + L++ G + Sbjct: 241 FRLMDSGAQLEFVPERL-RGEVARFDITD-KAGKVIVAKDKRVTARHTRELEQSGTTHIS 298 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 + D L G VA +IV+G+TGEI +A + + E L+++ + ++D+ ++Y + ++ AY Sbjct: 299 VPEDFLIGRVVARNIVDGDTGEILAKANEELTEALLKKLRAAGVQDLQVIYTNELDQGAY 358 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 I TL D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N Sbjct: 359 ISQTLRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFN 418 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 ++ D + +DI+A++KILVDLRNGKG +DDID+LGNRRVR VGE+ +NQYR Sbjct: 419 AKIGRDEATGPMVLSNDDILAVVKILVDLRNGKGEVDDIDHLGNRRVRCVGELAENQYRT 478 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL R+E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH Sbjct: 479 GLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITH 538 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGF Sbjct: 539 KRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGF 598 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 IETPYR+V DGKVT ++ YLSA+EE IAQAN++LD +G T +LV R GE LV Sbjct: 599 IETPYRRVVDGKVTMEIDYLSAIEEGKYIIAQANATLDAEGRLTGDLVSAREKGESTLVS 658 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 +++ ++D SP Q+VS+AASL+PFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E Sbjct: 659 ADRVQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIER 718 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 V A SG + A R G+V+ VDA RIV+R + + GVDIY L+K+QRSNQNT ++ Sbjct: 719 VAAVDSGTVVTANRGGVVDYVDATRIVVRVNDDEAVAGEVGVDIYNLIKYQRSNQNTNIH 778 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 QRP+VK GD++ + D+IADG STDLG++A+G+NML+AFMPW+GYNFEDS+LISER+V+ED Sbjct: 779 QRPIVKKGDKLAKGDVIADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAED 838 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 +TSIHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD LVGK Sbjct: 839 RYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGK 898 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G GTV+DV++F R GI +++R+ Sbjct: 899 VTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQ 958 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 + ++++ D +D+ I++ + + R+ ++L G+ A GP+ K T + ++ Sbjct: 959 QIIDDELKRFRLDLNDQLRIVEADAFDRIEKLLTGRVANGGPQKLAKGTKIDKAYLASVE 1018 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 + W+ +E+V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV+ Sbjct: 1019 KFHWFDIRPAEEEVATQLESIKNALEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVY 1078 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMN+GQ+ Sbjct: 1079 LAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPADIVLNPLGVPSRMNIGQVL 1138 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 E HLGWA G+G++I ++ + + LR FLE++ + E++S DD +L +A Sbjct: 1139 EVHLGWAGKGMGQRIGDML---QREAKTAELRKFLEEIYNSRGRKEELSQLSDDEILAMA 1195 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDR 1247 + SGVP ++PVFDGA EE I ML++A D Q+ LYDG TGE F+R Sbjct: 1196 RELTSGVPFASPVFDGASEEEIKDMLKLAYPDDLAQAKGLTETRTQAYLYDGRTGERFER 1255 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 P TVGY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1256 PTTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1315 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AYVLQEMLT+KSDDV GRT+VYE+IV G E G PESFNVLVKE+++LGL I+LE S Sbjct: 1316 AYVLQEMLTVKSDDVQGRTKVYENIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS 1374 >gi|153802862|ref|ZP_01957448.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae MZO-3] gi|124121617|gb|EAY40360.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae MZO-3] Length = 1375 Score = 1636 bits (4237), Expect = 0.0, Method: Composition-based stats. Identities = 714/1366 (52%), Positives = 976/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 35 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 90 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 91 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 148 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 149 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 208 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 209 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 268 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 269 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 325 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 326 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 385 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF +++YDLSTVGR+K N + Sbjct: 386 RVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGR 445 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 446 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 505 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 506 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 565 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 566 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 625 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L PRE +D Sbjct: 626 RRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVD 685 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 686 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 745 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 746 SGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 805 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 806 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 865 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 866 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 925 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ E+ Sbjct: 926 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEXEQM 985 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 986 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLGSIERKKWL 1032 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +++E++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1033 EQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1092 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1093 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1152 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G IS+ D+ V +A Sbjct: 1153 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNL 1209 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1210 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1269 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1270 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1329 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1330 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1375 >gi|315635146|ref|ZP_07890424.1| DNA-directed RNA polymerase subunit beta [Aggregatibacter segnis ATCC 33393] gi|315476108|gb|EFU66862.1| DNA-directed RNA polymerase subunit beta [Aggregatibacter segnis ATCC 33393] Length = 1342 Score = 1636 bits (4237), Expect = 0.0, Method: Composition-based stats. Identities = 702/1367 (51%), Positives = 973/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P++++IP L+ +Q S++ F+ + +GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLNIPYLLTIQLDSFEKFIQRD----PDGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++VSY P FDV +C R TYA PL++ LRL+ +D D G +I Sbjct: 57 FPIVSTNGNTELQYVSYRLGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDKDAAPG--TI 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +E+IL F+ K+V+ + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPSTIILRALGYTTEQILDLFFDKVVFEIKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +K+L++ +K + + ++ Sbjct: 235 NKLLMNLMPERL-RGETAAFDIE--ANGKVYVERGRRITARHIKALEKDNIKQVDVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN +TGE+ A + + L ++ + + L+ + ++ YI TL Sbjct: 292 IVGKVAAKDYVNLDTGELVCAANMELSLEVLAKLAQAGYTTVETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE++F LFF SD+YDLS VGR+K N L + Sbjct: 352 RVDPSSDRLSALVEIYRMMRPGEPPTKEAAEALFENLFFSSDRYDLSAVGRMKFNRSLGI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDI++++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EETTGSGTLSNEDIVSVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+++V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLEAVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT ++ YLSA+EE IAQANS+LD++ FT+ V CR GE L E+I Sbjct: 592 RKVVNGQVTEEIEYLSAIEEGKYVIAQANSNLDDEFRFTDAFVTCRGEHGESGLYKPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIEKAVAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G ++ VDA RIV++ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTIQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V++G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VELGEPVERGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ ++ R+ +L + + + R++W Sbjct: 952 MQLKQAKKDLSEEFEILEAGLFMRVRNLLLSGG-------------FDAKSLDKLDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +E+ Q +E L Q+E + E + + + KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTLDNEEKQHQLEQLAEQHEELRKEFERKLEVQRNKIIQGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K I+ LR +++K G GS +S + D+ V+R+A+ Sbjct: 1119 GLAAKGIGDQINAMI---KQQQSIAKLREYMQKAYDLGGGSQKVDLSTFTDEEVMRLAQN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E+ I +L + L SGQ LYDG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPIATPVFDGAHEKEIKGLLELGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV+GN + GTPESFNV++KE+++LG++IDL+ Sbjct: 1296 DDVNGRTKMYKNIVSGNQQMDPGTPESFNVIMKEIRSLGINIDLDEE 1342 >gi|264676494|ref|YP_003276400.1| DNA-directed RNA polymerase subunit beta [Comamonas testosteroni CNB-2] gi|299531359|ref|ZP_07044769.1| DNA-directed RNA polymerase subunit beta [Comamonas testosteroni S44] gi|262207006|gb|ACY31104.1| DNA-directed RNA polymerase, beta subunit [Comamonas testosteroni CNB-2] gi|298720766|gb|EFI61713.1| DNA-directed RNA polymerase subunit beta [Comamonas testosteroni S44] Length = 1370 Score = 1636 bits (4236), Expect = 0.0, Method: Composition-based stats. Identities = 697/1375 (50%), Positives = 970/1375 (70%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG ++++P L+++QK +Y FL ++AP +R +GLQAAF S Sbjct: 1 MAYSYTERKRIRKSFGSRDSVLEVPYLLQMQKDAYTAFLQADVAPKKRTIDGLQAAFNSA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFT-GAKS 121 FPI + +G ++FV Y P FDV +C R LT+A ++ ++LI++D + T +K Sbjct: 61 FPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTAQSKV 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 VKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KD+++ R+DRRRK+PV+ L A+GM E IL+TF+ + Sbjct: 181 ARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVSILLKAIGMTPETILATFFVNDNFRLM 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 A D + G + D +G+ V+ K++T+ + L++ G KF+ + D Sbjct: 241 DSGAQMEFVA-DRLKGEVARFDITD-KSGKVVVAKDKRITARHTRELEQSGTKFVSVPED 298 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G +A++IV+ +TGEI +A + + E L+++ + ++D+ +Y + ++ AYI T Sbjct: 299 FLLGRVLAKNIVDPDTGEIIAKANEELTEALLKKLRSAGVQDVQCIYTNELDQGAYISQT 358 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L TD+ D A + IYR+MRPG+ T +++F LF+++D YDLS VGR+K N ++ Sbjct: 359 LRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNADTYDLSRVGRMKFNAKIG 418 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + + EDI+A++KILVDLRNG+G +DDID+LGNRRVR VGE+ +NQYR GL R Sbjct: 419 REGATGPMVLSNEDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGLAR 478 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH RR+ Sbjct: 479 IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRV 538 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIETP Sbjct: 539 SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETP 598 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V DGKVT D+ YLSA+EE IAQAN+ LD +G+ ELV R AGE LV E++ Sbjct: 599 YRRVVDGKVTMDIDYLSAIEEGKYVIAQANADLDAEGNLVGELVSAREAGESTLVSAERV 658 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SP Q+VS+AASLIPFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A Sbjct: 659 QYMDVSPAQIVSVAASLIPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVAAV 718 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + AKR GIV+ VDA RIVIR + + GVDIY L+K+QRSNQNT ++QRP+ Sbjct: 719 DSGTVVTAKRGGIVDYVDATRIVIRVNDDEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPI 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V GD++ + D++ADG STDLG++A+G+NML+AFMPW+GYN+EDS++I+ER+V++D +TS Sbjct: 779 VSRGDKLAKGDVLADGASTDLGEIAIGQNMLIAFMPWNGYNYEDSVMINERIVADDRYTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD+LVGK+TPK Sbjct: 839 IHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDVLVGKVTPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV G GTV+DV++F R GI +++R+ + Sbjct: 899 GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQIID 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ I++ + + R+ ++L G+ A GP+ K + + + W Sbjct: 959 DELKRFRLDLNDQLRIVEADAFDRIEKLLTGRVANGGPQKLSKGAKIDKAYLDGVEKFHW 1018 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + ++ V +ES+K E + + F+ K +K+ GD++P GVL++VKV++A+K Sbjct: 1019 FDIRPAEDDVAAQLESIKNSIEQQRHTFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK 1078 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I P EDMPFL DGT DIVLNPLGVPSRMN+GQ+ E HL Sbjct: 1079 RRLQPGDKMAGRHGNKGVVSKITPVEDMPFLADGTTADIVLNPLGVPSRMNIGQVLEVHL 1138 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA GLG++I ++ + + +R+FLE++ E++S DD V+ +A++ Sbjct: 1139 GWAGKGLGQRIGDML---QKEARAAEVRAFLEEIYNRSGRKEELSQLDDGEVMSMAKELT 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDRPVTV 1251 +GVP +TPVFDGA E I ML++A D Q+ LYDG TGE F+RP TV Sbjct: 1196 TGVPFATPVFDGASEAEIKDMLKLAYPDDIAAAKGLTETRTQAYLYDGRTGERFERPTTV 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAYVL Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDVVGRT+VYESIV G + E G PESFNVLVKE+++LGL I+LE S Sbjct: 1316 QEMLTVKSDDVVGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGLDIELERS 1370 >gi|148825209|ref|YP_001289962.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae PittEE] gi|166229294|sp|A5U9X8|RPOB_HAEIE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|148715369|gb|ABQ97579.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae PittEE] gi|309972334|gb|ADO95535.1| LOW QUALITY PROTEIN: DNA-directed RNA polymerase beta chain [Haemophilus influenzae R2846] Length = 1343 Score = 1636 bits (4236), Expect = 0.0, Method: Composition-based stats. Identities = 706/1365 (51%), Positives = 968/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEISG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLSA++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKLDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINTMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN + GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMDPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|78099442|gb|ABB20857.1| RNA polymerase subunit B [Acinetobacter genomosp. 9] Length = 1362 Score = 1636 bits (4236), Expect = 0.0, Method: Composition-based stats. Identities = 712/1374 (51%), Positives = 973/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPSVMDAPYLLAIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLILKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG +E IL FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYSNENILDMFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E GK++ + ++ ++ G++ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDILDKD-GKAIVEQGKRINARHVRQMEASGLEKLAVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + G++ A V+ + + +I ++ IL+ + ++ +++ ++L Sbjct: 295 LYERITAEDIQLKD-GDVIA-ANTVLSHEIMVKIAEGGVKQFNILFTNDIDRGSFVADSL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTSNREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDI ++K LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDITDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKCNN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S++D+DG+ TEE V R G+ + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSAMDKDGNLTEEFVSVRHQGDFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RIPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA SG ++A+R G +E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVAHDSGVCVIAQRGGRIEFVDASRVVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEFKIFEEAARERVIRLLNGQESNGGGTT-KRGDKLSEDVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPVDEAIAERLTQIQVFLKEKSFEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG +I ++ + + + LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGMAAKGLGDQIDKMMKEQRT---VLELRDFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L+++ ++GVP++TPVFDGA+E I +L++A L +GQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LKLSGNLRAGVPLATPVFDGAEEGQIKELLQLAGLSSTGQTVLYDGRTGERFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|223041809|ref|ZP_03611999.1| DNA-directed RNA polymerase subunit beta [Actinobacillus minor 202] gi|198246534|gb|ACH82225.1| DNA-directed RNA polymerase subunit beta [Actinobacillus minor 202] Length = 1343 Score = 1636 bits (4236), Expect = 0.0, Method: Composition-based stats. Identities = 708/1367 (51%), Positives = 968/1367 (70%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q SY+ F+ + +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRPQVLNVPYLLTLQLDSYEKFIQQD----PEGLQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +GA L++VSYE P FDV +C R TYA PL++ LRL+ FD + G ++ Sbjct: 57 FPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEIL+ F+ + ++ Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILAMFFETVKFTVSS 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + + G + G+ +E G+++T+ + L + GV + + + Sbjct: 235 DNKLQMELVPERLRGETALFDIES--EGKVYVEKGRRITAKHTRDLVKAGVTKIDVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ +GEI A I + L + + ++I +L+ + ++ YI TL Sbjct: 293 IVGKVAAKDYVDLSSGEIICPANMEISLEMLANLSQAGYKEIEVLFTNDLDYGPYISETL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE +F+ +FF +D+YDLS VGR+K N LN+ Sbjct: 353 RVDPTYDRLSALVEIYRMMRPGEPPTKEAAEGLFDNMFFSADRYDLSAVGRMKFNRSLNI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + +DII ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 PEGEGLGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT D+ YLSA+EE N IAQANS+LDED FT+ V CR GE L E+I Sbjct: 593 RKVVNGQVTEDIEYLSAIEEGNYVIAQANSNLDEDFRFTDTYVTCRGEHGESGLYKPEEI 652 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 653 HYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 712 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G ++ VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 713 DSGVAVVAKRGGTIQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPC 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK+G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 773 VKLGEPVGRGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 833 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 893 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L S + + R +W Sbjct: 953 MQLREAKKDLTEELEILEAGLFTRVRNLLVEGGV-------------SEAELDKVAREKW 999 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + ++DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A+K Sbjct: 1000 LEQTLEDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVK 1059 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1060 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1119 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K ++ LR +++K G GS + +S + D+ V+R+A+ Sbjct: 1120 GLAARGIGDQINAMI---KQQQSVAKLREYIQKAYDLGHGSQSVDLSTFSDEEVMRLAQN 1176 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E I +L + L SGQ LYDG TGE F+RPVTVGY+YMLKL Sbjct: 1177 LRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKL 1236 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1237 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1296 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G E G PESFNV+ KE++AL + ++L+ + Sbjct: 1297 DDVNGRTKMYKNIVDGTHYMEPGIPESFNVITKEIRALAIDMELDEA 1343 >gi|332172379|gb|AEE21633.1| DNA-directed RNA polymerase, beta subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1342 Score = 1636 bits (4236), Expect = 0.0, Method: Composition-based stats. Identities = 711/1365 (52%), Positives = 976/1365 (71%), Gaps = 26/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P++++IP L+ +Q S+ F+ +++ GL+AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIDLDVD----GQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L++VSY P FDV +C R +T++ PL++ LRL++FD + G ++ Sbjct: 57 FPIKSYSGNAELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDREAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P T L AL + +EEIL F+ K G Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPATIMLRALEIPTEEILGMFFEKNQVRIDG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + D + G ++D D G ++E+G+++++ ++L++ G+ L + ++ Sbjct: 235 NRF-MSDIVPDRLRGETAQFDILDSD-GNVLVEAGRRISARHTRALEKAGIVELEVPAEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G A D V+ ETGE+ + A D++ +++ + + LY++ +++ AYI +TL Sbjct: 293 LVGRVFACDYVDQETGELVVAANDILTLENVLALKEAGYTTFETLYINELDHGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +R +AL++IYR+MRPG+ T AE++F LFF D+YDLS+VGR+K N RL Sbjct: 353 RIDSSTNRLEALVEIYRMMRPGEPPTKDAAETLFQNLFFSDDRYDLSSVGRMKFNRRLGR 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 +T + K+DI+ ++K L+ +R+GK +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 ETSIGAGTLDKDDIVDVMKQLITIRDGKDDVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVKERLSLGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N +GF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLASFARTNDFGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RK+ DG VT+++ YLSA+EE IAQAN +LDE+G ++L+ CR GE L +I Sbjct: 593 RKIVDGVVTDEIDYLSAIEEGQFSIAQANVALDENGRLADDLIPCRHRGETTLKESSEIT 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q+VSIAAS+IPFLE+DD+NR LMG NMQRQAVP L A+ P VGTGME VA Sbjct: 653 YMDVSPQQIVSIAASIIPFLEHDDANRALMGANMQRQAVPTLIADKPLVGTGMEKTVAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G V+ VDA RIVI+ E + +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVTVVAKRGGRVDYVDASRIVIKVNEEETVAGEAGIDIYNLTKYTRSNQNTCINQRPTC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ + D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 NVGEPIVAGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILISERVAMEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEI+ DIPNV E L +DE G++ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCVARDTKLGPEEISSDIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V GTV+DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVRGTVIDVQVFTRDGVEKDKRALEIEGM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ + +D DE IL I++R +L + + R +W+ Sbjct: 953 QLRQVKKDLSDEFNILADGIFARAKNLLVKSG-------------IEESRLESAQREKWF 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D+ Q ++ + Q+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 DLTLADDDAQTELDQIAEQFVEIKADFDKKFEIKRRKITQGDDLQPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I P EDMP+ +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1060 QIQPGDKMAGRHGNKGVISTIKPVEDMPYDVNGTPVDIVLNPLGVPSRMNIGQILETHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG--SHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K + +++ LR FL++V G G + + DD + R+A+ Sbjct: 1120 MAAHGIGVKIDRML---KEHEEMAKLRGFLKEVYGAGTTDQEVDLDSFSDDEITRLADNL 1176 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++TPVFDGA E I ML +ADL ESGQ L+DG TG F+RPVTVGY+YMLKLN Sbjct: 1177 RKGVPMATPVFDGATEAEIKHMLTLADLPESGQIALFDGRTGREFERPVTVGYMYMLKLN 1236 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1297 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEE 1341 >gi|182682618|ref|YP_001830778.1| DNA-directed RNA polymerase subunit beta [Xylella fastidiosa M23] gi|226699462|sp|B2IA68|RPOB_XYLF2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|182632728|gb|ACB93504.1| DNA-directed RNA polymerase, beta subunit [Xylella fastidiosa M23] Length = 1384 Score = 1636 bits (4236), Expect = 0.0, Method: Composition-based stats. Identities = 698/1390 (50%), Positives = 967/1390 (69%), Gaps = 35/1390 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK+ I+ +P L+ +Q SY FL ++ +R + GL A KSVF Sbjct: 3 SYSFTEKKRIRKDFGKHRSILKVPFLLAIQVDSYRAFLQGDVESSQRKDIGLHGALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI ++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K++K Sbjct: 63 PIVSYSGNAALEYVGYKLGEPMFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAVK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 IKEQ +Y+G++PLMT++GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YIKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EEIL F+ + D Sbjct: 181 IIPCRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEILGEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G +S +L D G ++E+GK++T+ +K L+ G+ L + + L Sbjct: 241 EGVQLELVPERLRGEILSFNLTD--GGSVIVEAGKRITARHVKQLEASGISALAVPDEYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+++ TGE+ A ++E + + I + L+V+ ++ AY+ NTL Sbjct: 299 IGRILSHDVIDATTGELLASANSEVNEDRIIAFRKAGIESVGTLWVNDLDRGAYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D + + +A ++IYR+MRPG+ T A+++F+ LFF D+YDLS VGR+K N R+ Sbjct: 359 IDPTRTQLEAQVEIYRMMRPGEPPTKEAAQNLFHNLFFTFDRYDLSMVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + + +IK L ++RNG+G +DDID+LGN Sbjct: 419 EVAGEPVLYDKKYFSDRNDEESRRLVSKLGETSDILDVIKGLCEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RRLSALG GG+ R RAG E+RDVH +HYG +C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHLSHYGCLCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV +G+VT++V YLSA+EE IAQAN+ D++G T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVVEGRVTDEVEYLSAIEENQYVIAQANTLTDDNGQLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E V CR GE +L P + ++D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 ESFVPCRFQGESLLKPPSYVHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+A+ P VGTG+E VA+ SG + A+R G+++QVDA RIV++ E + + +GVD Sbjct: 719 PTLRAQKPLVGTGIERTVARDSGVTVNARRGGVIDQVDAGRIVVKVNESEIIGATDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD V D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYGLIKYTRSNQNTCINQRPLVNVGDIVASGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLG EEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCIARDTKLGSEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDILVGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ SG Sbjct: 959 DVQVFTRDGIEKDKRAHQIEEYEIKRVKKDFDDQFRILEGAIYARLRSQIVGKVVNSGVD 1018 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK V++ + +S W+ ++DE ++ + Q + + + RF +K KI Sbjct: 1019 -IKKGEVITDPYLDGLKKSDWFALRMKDEVAVEAIDRAQKQIQAYQKEFDQRFSDKRSKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG++S ++P EDMPF++DGTPVDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRCIQCGDKMAGRHGNKGVISNVVPVEDMPFMEDGTPVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG- 1179 VLNPLGVPSRMN+GQI E HLGWA GLG +I+ ++ +AN I+ LR FL ++ Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGHRIQRML---EANAAIADLRKFLNEIYNHDK 1194 Query: 1180 ---SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + DD +L +A+ GVP+++PVFDGA E+ I ML +A+L GQ+ L Sbjct: 1195 SLVGERVDLSQFSDDELLNMAKNLTDGVPMASPVFDGASEQEIKRMLDLAELPAGGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGEPFDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGHTGEPFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G+ G PESFNVLVKE+++ Sbjct: 1315 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGDHQMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLENS 1366 L ++I+LE++ Sbjct: 1375 LAINIELEDN 1384 >gi|322513233|ref|ZP_08066359.1| DNA-directed RNA polymerase subunit beta [Actinobacillus ureae ATCC 25976] gi|322121009|gb|EFX92850.1| DNA-directed RNA polymerase subunit beta [Actinobacillus ureae ATCC 25976] Length = 1342 Score = 1635 bits (4235), Expect = 0.0, Method: Composition-based stats. Identities = 707/1367 (51%), Positives = 972/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q S++ F+ + +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIERD----PDGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +GA L++VSYE P FDV +C R TYA PL++ LRL+ FD + G ++ Sbjct: 57 FPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEILS F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILSIFFEKVTFEIQD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +++L++ G+ + + + Sbjct: 235 NKLLMTLVPERL-RGETAAFDIE--ADGKVYVERGRRITARHIRTLEKDGITQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D ++ TGE+ A I + L ++ + ++I +L+ + +++ YI TL Sbjct: 292 IVGKVAAKDYIDLSTGELVCPANMEISMEMLAKLSQAGYKEIDVLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ +FF +D+YDLS VGR+K N LNL Sbjct: 352 RVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSLNL 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DII I++ L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 AEGVGSGILSNDDIIGIMQKLLEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D + PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT D+ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E I Sbjct: 592 RKVVNGQVTEDIEYLSAIEEGNYVIAQANSNLDEEFRFTDTYVTCRGEHGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG AIVAKR G ++ VDA RIV++ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAIVAKRGGTIQYVDASRIVVKVNEDETILGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VNLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ +++R+ +L S + + R +W Sbjct: 952 MQLKEAKKDLTEELEILEAGLFTRVRNLLVEGGV-------------SEAELDKVAREKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A++ Sbjct: 999 LEQTLDDEEKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVR 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I +I K +++ LR +++K G GS +S + D+ V+R+AE Sbjct: 1119 GLAAKGIGDQINKMI---KQQQEVAKLREYIQKAYDLGHGSQVVDLSTFTDEEVMRLAEN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E I +L + L SGQ L+DG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPLATPVFDGAHEAEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G E G PESFNVL+KE++ALG+ ++L+ Sbjct: 1296 DDVNGRTKMYKNIVDGTHQMEPGMPESFNVLLKEIRALGIDMELDED 1342 >gi|15603602|ref|NP_246676.1| DNA-directed RNA polymerase subunit beta [Pasteurella multocida subsp. multocida str. Pm70] gi|41017792|sp|Q9CK91|RPOB_PASMU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|12722152|gb|AAK03821.1| RpoB [Pasteurella multocida subsp. multocida str. Pm70] Length = 1342 Score = 1635 bits (4235), Expect = 0.0, Method: Composition-based stats. Identities = 705/1367 (51%), Positives = 970/1367 (70%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQRD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++VSY+ P FDV +C R TYA PL++ LRL+ +D D G +I Sbjct: 57 FPIVSNNGNTELQYVSYQLGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDKDAAPG--TI 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L AL +E+IL F+ K+V+ Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALNYTTEQILDIFFDKVVFEISN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +++L++ + + + ++ Sbjct: 235 NKLLMTLVPERL-RGETATFDIE--ANGKVYVERGRRITARHIRALEKDQITQVEVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ E+GEI A I + L ++ + + I L+ + ++ YI TL Sbjct: 292 IVGKVAAKDYVDLESGEIVCPANMEISLEMLAKLAQAGYKTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE +F+ LFF SD+YDLS VGR+K N L + Sbjct: 352 RVDPSNDRLSALVEIYRMMRPGEPPTKEAAEGLFDNLFFSSDRYDLSAVGRMKFNRSLGI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + +DII ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEETGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT ++ YLSA+EE IAQANS+LDE+ FT+ V CR GE L ++I Sbjct: 592 RKVVNGQVTEEIEYLSAIEEGKYVIAQANSNLDEELRFTDAFVTCRGEHGESGLYRPDEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIEKAVAV 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG ++AKR G+V+ VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVTVIAKRGGMVQYVDASRIVVKVNEDETIPGEAGIDIYNLVKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ + R +++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VSLGEPIGRGEVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ +++R+ +L + + + R++W Sbjct: 952 MQLKQAKKDLVEELEILEAGLFTRVRSLLIAGG-------------FDAKNLDKLDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + ++ DE Q +E L QYE + E + + + KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQSLSDEAQQNQLEQLAEQYEELRKEFERKLEVQRGKIIQGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G KI ++I K D++ LR +++K G GS +S + D+ V+R+A+ Sbjct: 1119 GLAAKGIGDKINAMI---KQQQDVAKLREYMQKAYDLGHGSQKVDLSTFSDEEVMRLAQN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E I +L + L SGQ L+DG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G + GTPESFNV++KE+++LG++IDL+ Sbjct: 1296 DDVNGRTKMYKNIVGGTHQMDPGTPESFNVIMKEIRSLGINIDLDED 1342 >gi|240949956|ref|ZP_04754273.1| DNA-directed RNA polymerase subunit beta [Actinobacillus minor NM305] gi|240295578|gb|EER46302.1| DNA-directed RNA polymerase subunit beta [Actinobacillus minor NM305] Length = 1343 Score = 1635 bits (4235), Expect = 0.0, Method: Composition-based stats. Identities = 707/1367 (51%), Positives = 967/1367 (70%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q SY+ F+ + +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRPQVLNVPYLLTLQLDSYEKFIQQD----PEGLQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +GA L++VSYE P FDV +C R TYA PL++ LRL+ FD + G ++ Sbjct: 57 FPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEIL+ F+ + ++ Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILAMFFETVKFTVSS 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + + G + G+ +E G+++T+ + L + GV + + + Sbjct: 235 DNKLQMELVPERLRGETALFDIES--EGKVYVEKGRRITAKHTRDLVKAGVTKIDVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ +GEI A I + L + + ++I +L+ + ++ YI TL Sbjct: 293 IVGKVAAKDYVDLSSGEIICPANMEISLEMLANLSQAGYKEIEVLFTNDLDYGPYISETL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE +F+ +FF +D+YDLS VGR+K N LN+ Sbjct: 353 RVDPTYDRLSALVEIYRMMRPGEPPTKEAAEGLFDNMFFSADRYDLSAVGRMKFNRSLNI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + +DII ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 PEGEGLGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT D+ YLSA+EE N IAQANS+LDE+ FT+ V CR GE L E I Sbjct: 593 RKVVNGQVTEDIEYLSAIEEGNYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYKPEDI 652 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 653 HYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 712 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G ++ VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 713 DSGVAVVAKRGGTIQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPC 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK+G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 773 VKLGEPVGRGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 833 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 893 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L S + + R +W Sbjct: 953 MQLREAKKDLTEELEILEAGLFTRVRNLLVEGGV-------------SEAELDKVAREKW 999 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + ++DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A+K Sbjct: 1000 LEQTLEDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVK 1059 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1060 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1119 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K ++ LR +++K G GS + +S + D+ V+R+A+ Sbjct: 1120 GLAARGIGDQINAMI---KQQQSVAKLREYIQKAYDLGHGSQSVDLSTFSDEEVMRLAQN 1176 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E I +L + L SGQ LYDG TGE F+RPVTVGY+YMLKL Sbjct: 1177 LRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKL 1236 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1237 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1296 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G E G PESFNV+ KE++AL + ++L+ + Sbjct: 1297 DDVNGRTKMYKNIVDGTHYMEPGIPESFNVITKEIRALAIDMELDEA 1343 >gi|262370133|ref|ZP_06063460.1| RNA polymerase subunit B [Acinetobacter johnsonii SH046] gi|262315172|gb|EEY96212.1| RNA polymerase subunit B [Acinetobacter johnsonii SH046] Length = 1362 Score = 1635 bits (4234), Expect = 0.0, Method: Composition-based stats. Identities = 713/1374 (51%), Positives = 972/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPSVMDAPYLLAIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLILKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ VRIDRRRK+ T L ALG ++ +IL FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVFVRIDRRRKLLATVVLRALGYNNAQILDLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G +VD D G+ ++E GK++ + ++ ++ G++ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDIVDND-GKTIVEQGKRINARHVRQMEAAGLEKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AED + + G++ A ++ + + ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAED-IPLKDGDVIA-ANTLLSHEIMVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDI ++K LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDITDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKCNN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S +D+DG+ TEE V R G+ + Sbjct: 593 FGFLETPYRKVLDGRVTDEVEYLSAIEEVGTVIAQADSGVDKDGNLTEEFVSVRHQGDFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA SG ++A R G +E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVAHDSGVCVIAGRGGRIEFVDASRVVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LVK+GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVKLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS+D++S Sbjct: 953 RAQAIEKAQLDSYRKDLKEEYKIFEEAARERIVRLLTGQESNGGGTT-KRGDKLSADVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPTDEAIAERLTQIQVFLKEKSFEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ KA + LR FL+K+ G E + DD + Sbjct: 1132 QILETHLGMAAKGLGEEIDKML---KAQRTVLELRGFLDKIYNKVGGEQEDLDSLTDDEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ ++GVP++TPVFDGA+E I +L +A++ +GQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LVLSGNLRAGVPLATPVFDGAEESQIKDLLELANISRTGQTVLYDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|145637446|ref|ZP_01793105.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae PittHH] gi|145269392|gb|EDK09336.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae PittHH] Length = 1343 Score = 1635 bits (4234), Expect = 0.0, Method: Composition-based stats. Identities = 706/1365 (51%), Positives = 968/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 LEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLSA++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKLDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINTMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN + GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMDPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|229844327|ref|ZP_04464467.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae 6P18H1] gi|229812576|gb|EEP48265.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae 6P18H1] Length = 1343 Score = 1635 bits (4234), Expect = 0.0, Method: Composition-based stats. Identities = 706/1365 (51%), Positives = 967/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFHSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLSA++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKLDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINAMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN + GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMDPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|260913280|ref|ZP_05919762.1| DNA-directed RNA polymerase subunit beta [Pasteurella dagmatis ATCC 43325] gi|260632867|gb|EEX51036.1| DNA-directed RNA polymerase subunit beta [Pasteurella dagmatis ATCC 43325] Length = 1342 Score = 1635 bits (4234), Expect = 0.0, Method: Composition-based stats. Identities = 707/1367 (51%), Positives = 969/1367 (70%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQRD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++VSY+ P FDV +C R TYA PL++ LRL+ +D D G +I Sbjct: 57 FPIVSNNGNTELQYVSYQLGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDKDAAPG--TI 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L AL +E+IL F+ K+V+ Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALNYTTEQILDIFFDKVVFEISN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +K+L++ V + + ++ Sbjct: 235 NKLLMTLVPERL-RGETATFDIE--ANGKVYVERGRRITARHIKALEKDNVTQVEVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ E+GEI A I + L ++ + I L+ + ++ YI TL Sbjct: 292 IVGKVAAKDYVDLESGEIVCPANMEISLEMLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE +F+ LFF SD+YDLS VGR+K N L + Sbjct: 352 RVDPSNDRLSALVEIYRMMRPGEPPTKEAAEGLFDNLFFSSDRYDLSAVGRMKFNRSLGI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + EDII ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEETGSGILSNEDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT ++ YLSA+EE IAQANS+LDE+ FT+ V CR GE L ++I Sbjct: 592 RKVVNGQVTEEIEYLSAIEEGKYVIAQANSNLDEELRFTDAFVTCRGEHGESGLYRPDEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIEKAVAV 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG ++AKR G+V+ VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVTVIAKRGGVVQYVDASRIVVKVNEDETVPGEAGIDIYNLVKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ + R +++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VSLGEPIGRGEVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ +++R+ +L + + + R++W Sbjct: 952 MQLKQAKKDLVEELEILEAGLFTRVRSLLIAGG-------------FEAKNLDKLDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + ++ DE Q +E L QYE + E + + + KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQSLSDEAQQNQLEQLAEQYEELRKEFERKLEIQRGKIIQGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RHIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G KI ++I K +++ LR +++K G GS +S + D+ V+R+A+ Sbjct: 1119 GLAAKGIGDKINAMI---KQQQEVAKLREYMQKAYDLGHGSQKVDLSTFTDEEVMRLAQN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E I +L + L SGQ L+DG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G + GTPESFNV++KE+++LG++IDL+ Sbjct: 1296 DDVNGRTKMYKNIVGGTHQMDPGTPESFNVIMKEIRSLGINIDLDED 1342 >gi|28199867|ref|NP_780181.1| DNA-directed RNA polymerase subunit beta [Xylella fastidiosa Temecula1] gi|32129997|sp|Q87A32|RPOB_XYLFT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|28057988|gb|AAO29830.1| RNA polymerase beta subunit [Xylella fastidiosa Temecula1] Length = 1388 Score = 1635 bits (4234), Expect = 0.0, Method: Composition-based stats. Identities = 698/1390 (50%), Positives = 967/1390 (69%), Gaps = 35/1390 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK+ I+ +P L+ +Q SY FL ++ +R + GL A KSVF Sbjct: 7 SYSFTEKKRIRKDFGKHRSILKVPFLLAIQVDSYRAFLQGDVESSQRKDIGLHGALKSVF 66 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI ++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K++K Sbjct: 67 PIVSYSGNAALEYVGYKLGEPMFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAVK 124 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 IKEQ +Y+G++PLMT++GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 125 YIKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 184 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EEIL F+ + D Sbjct: 185 IIPCRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEILGEFFEINTFHINPD 244 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G +S +L D G ++E+GK++T+ +K L+ G+ L + + L Sbjct: 245 EGVQLELVPERLRGEILSFNLTD--GGSVIVEAGKRITARHVKQLEASGISALAVPDEYL 302 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+++ TGE+ A ++E + + I + L+V+ ++ AY+ NTL Sbjct: 303 IGRILSHDVIDATTGELLASANSEVNEDRIIAFRKAGIESVGTLWVNDLDRGAYLSNTLR 362 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D + + +A ++IYR+MRPG+ T A+++F+ LFF D+YDLS VGR+K N R+ Sbjct: 363 IDPTRTQLEAQVEIYRMMRPGEPPTKEAAQNLFHNLFFTFDRYDLSMVGRMKFNRRVGRK 422 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + + +IK L ++RNG+G +DDID+LGN Sbjct: 423 EVAGEPVLYDKKYFSDRNDEESRRLVSKLGETSDILDVIKGLCEIRNGRGVVDDIDHLGN 482 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 483 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 542 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RRLSALG GG+ R RAG E+RDVH +HYG +C ET EG NIG Sbjct: 543 LSQFMDQNNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHLSHYGCLCTIETPEGPNIG 602 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV +G+VT++V YLSA+EE IAQAN+ D++G T Sbjct: 603 LINSLAVFARTNQYGFLETPYRKVVEGRVTDEVEYLSAIEENQYVIAQANTLTDDNGQLT 662 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E V CR GE +L P + ++D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 663 ESFVPCRFQGESLLKPPSYVHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 722 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+A+ P VGTG+E VA+ SG + A+R G+++QVDA RIV++ E + + +GVD Sbjct: 723 PTLRAQKPLVGTGIERTVARDSGVTVNARRGGVIDQVDAGRIVVKVNESEIIGATDAGVD 782 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD V D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 783 IYGLIKYTRSNQNTCINQRPLVNVGDIVASGDVLADGPSTDIGELALGQNMLIAFMPWNG 842 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLG EEI+ DIPNVSE+ L +DE G Sbjct: 843 YNFEDSILLSERVVEEDRYTTIHIEELTCIARDTKLGSEEISADIPNVSEQALNRLDESG 902 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDILVGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 903 VVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 962 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ SG Sbjct: 963 DVQVFTRDGIEKDKRAHQIEEYEIKRVKKDFDDQFRILEGAIYARLRSQIVGKVVNSGVD 1022 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK V++ + +S W+ ++DE ++ + Q + + + RF +K KI Sbjct: 1023 -IKKGEVITDPYLDGLKKSDWFALRMKDEVAVEAIDRAQKQIQAYQKEFDQRFSDKRSKI 1081 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG++S ++P EDMPF++DGTPVDI Sbjct: 1082 TQGDDLAPGVLKMVKVFLAVKRCIQCGDKMAGRHGNKGVISNVVPVEDMPFMEDGTPVDI 1141 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG- 1179 VLNPLGVPSRMN+GQI E HLGWA GLG +I+ ++ +AN I+ LR FL ++ Sbjct: 1142 VLNPLGVPSRMNIGQILEVHLGWAAKGLGHRIQRML---EANAAIADLRKFLNEIYNHDK 1198 Query: 1180 ---SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + DD +L +A+ GVP+++PVFDGA E+ I ML +A+L GQ+ L Sbjct: 1199 SLVGERVDLSQFSDDELLNMAKNLTDGVPMASPVFDGASEQEIKRMLDLAELPAGGQTQL 1258 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGEPFDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1259 YDGHTGEPFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1318 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G+ G PESFNVLVKE+++ Sbjct: 1319 MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGDHQMVAGMPESFNVLVKEIRS 1378 Query: 1357 LGLSIDLENS 1366 L ++I+LE++ Sbjct: 1379 LAINIELEDN 1388 >gi|145633533|ref|ZP_01789262.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae 3655] gi|144985902|gb|EDJ92510.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae 3655] Length = 1343 Score = 1635 bits (4234), Expect = 0.0, Method: Composition-based stats. Identities = 705/1365 (51%), Positives = 967/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLS VGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSAVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGTGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLSA++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKVERTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINAMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN + GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMDPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|78099454|gb|ABB20863.1| RNA polymerase subunit B [Acinetobacter lwoffii] Length = 1362 Score = 1635 bits (4233), Expect = 0.0, Method: Composition-based stats. Identities = 710/1374 (51%), Positives = 971/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPSVMDAPYLLAIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLILKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG +E IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYSNENILNMFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D D G+ ++E GK++ + ++ ++ G++ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDILDKD-GKAIVEQGKRINARHVRQMEASGLEKLAVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + G++ A V+ + + +I ++ +L+ + ++ +++ ++L Sbjct: 295 LYERITAEDIALKD-GDVIA-ANTVLSHEVMVKIAEGGVKQFNVLFTNDIDRGSFVADSL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTTREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDI ++K LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDITDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT D+ YLSA+EE IAQA+S++D DG+ EE+V R G+ + Sbjct: 593 FGFLETPYRKVVDGRVTMDIEYLSAIEEVGTVIAQADSAVDADGNLLEEVVSVRHQGDFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA SG ++A+R G +E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVAHDSGVCVIAQRGGRIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEFKIFEEAARERVIRLLNGQESNGGGTT-KRGDKLSEDVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPVDEAIAERLTQIQVFLKEKSFEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG +I ++ + + + LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGMAAKGLGDQIDKMMKEQRT---VLELRDFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L+++ ++GVP++TPVFDGA+E I +L++A L +GQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LKLSGNLRAGVPLATPVFDGAEEGQIKELLQLAGLSSTGQTVLYDGRTGERFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|145630307|ref|ZP_01786088.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae R3021] gi|144984042|gb|EDJ91479.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae R3021] Length = 1343 Score = 1635 bits (4233), Expect = 0.0, Method: Composition-based stats. Identities = 706/1365 (51%), Positives = 968/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDKISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLSA++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKVERTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINAMLKQKQEVEKLRNYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN + GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMDPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|229846598|ref|ZP_04466706.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae 7P49H1] gi|229810691|gb|EEP46409.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae 7P49H1] Length = 1343 Score = 1635 bits (4233), Expect = 0.0, Method: Composition-based stats. Identities = 706/1365 (51%), Positives = 968/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEISG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLSA++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKLDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINTMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN + GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHTDPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|16272459|ref|NP_438673.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae Rd KW20] gi|145638570|ref|ZP_01794179.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae PittII] gi|260580962|ref|ZP_05848785.1| DNA-directed RNA polymerase, beta subunit [Haemophilus influenzae RdAW] gi|1173148|sp|P43738|RPOB_HAEIN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|1573496|gb|AAC22173.1| DNA-directed RNA polymerase, beta chain (rpoB) [Haemophilus influenzae Rd KW20] gi|145272165|gb|EDK12073.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae PittII] gi|260092321|gb|EEW76261.1| DNA-directed RNA polymerase, beta subunit [Haemophilus influenzae RdAW] gi|309750074|gb|ADO80058.1| DNA-directed RNA polymerase beta chain [Haemophilus influenzae R2866] Length = 1343 Score = 1635 bits (4233), Expect = 0.0, Method: Composition-based stats. Identities = 706/1365 (51%), Positives = 967/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLS ++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSVIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKLDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINAMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN E GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMEPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|120613164|ref|YP_972842.1| DNA-directed RNA polymerase subunit beta [Acidovorax citrulli AAC00-1] gi|158513036|sp|A1TVT0|RPOB_ACIAC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|120591628|gb|ABM35068.1| DNA-directed RNA polymerase subunit beta [Acidovorax citrulli AAC00-1] Length = 1374 Score = 1635 bits (4233), Expect = 0.0, Method: Composition-based stats. Identities = 697/1376 (50%), Positives = 968/1376 (70%), Gaps = 16/1376 (1%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 + R+RK FG ++ +P L+++QK +Y FL ++AP +R NEGLQAAF + Sbjct: 4 TSTYSYTERKRIRKSFGSRDSVLKVPYLLQMQKDAYTAFLQADMAPQKRTNEGLQAAFNA 63 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AK 120 FPI + +G ++FV Y P FDV +C R LT+A ++ ++LI++D + T +K Sbjct: 64 AFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSK 123 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL+ Sbjct: 124 VVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLF 183 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G++ E IL+ F+ + Sbjct: 184 SARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRL 243 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 A D + G + D +G+ V+ K++T+ + L++ G + + Sbjct: 244 MDSGAQMEFVA-DRLKGEVARFDITD-KSGKVVVAKDKRITARHTRELEQSGTTHISVPE 301 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G VA +IV+G+TGEI +A + + E L+++ + ++D+ ++Y + ++ AYI Sbjct: 302 DFLIGRVVARNIVDGDTGEIVAKANEELTEALLKKLRSAGVQDLQVIYTNELDQGAYISQ 361 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N ++ Sbjct: 362 TLRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKI 421 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 D + +DI+A++KILVDLRNGKG +DDID+LGNRRVR VGE+ +NQYR GL Sbjct: 422 GRDESTGPMVLSNDDILAVVKILVDLRNGKGEVDDIDHLGNRRVRCVGELAENQYRTGLA 481 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH RR Sbjct: 482 RIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRR 541 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIET Sbjct: 542 VSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIET 601 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR+V DGKVT+ + YLSA+EE IAQAN++LD +G T +LV R GE L+ E+ Sbjct: 602 PYRRVVDGKVTDQIDYLSAIEEGKYVIAQANAALDAEGRLTGDLVSAREKGESTLLSAER 661 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + ++D SP Q+VS+AASL+PFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A Sbjct: 662 VQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVAA 721 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG + A R GIV+ VDA RIV+R + + GVDIY L+K+QRSNQNT ++QRP Sbjct: 722 VDSGTVVTANRGGIVDYVDATRIVVRVNDDEAVAGEVGVDIYNLIKYQRSNQNTNIHQRP 781 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK GD + + D+IADG STDLG++A+G+NML+AFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 782 IVKKGDVLAKGDVIADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAEDRYT 841 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD LVGK+TP Sbjct: 842 SIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTP 901 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G SGTV+DV++F R GI +++R+ + Sbjct: 902 KGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGIQRDKRAQQII 961 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 ++++ D +D+ I++ + + R+ ++L G+ A GP+ K T + ++ + Sbjct: 962 DDELKRFRLDLNDQLRIVEADAFDRIEKLLNGRVANGGPQKLAKGTKIDKAYLASVEKFH 1021 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ +++V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV++A+ Sbjct: 1022 WFDIRPAEDEVATQLESIKNALEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAV 1081 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMN+GQ+ E H Sbjct: 1082 KRRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPADIVLNPLGVPSRMNIGQVLEVH 1141 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA G+G++I ++ + + +R FLE+V + E +S DD V+ +A Sbjct: 1142 LGWAGKGIGQRIGDML---RDQAKAAEMRKFLEEVYNSRGRKEDLSVLSDDEVMAMAANL 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLD----ESG------QSILYDGLTGEPFDRPVT 1250 +GVP +TPVFDGA E I ML++A D G Q+ LYDG TGE F+RP T Sbjct: 1199 TNGVPYATPVFDGASEAEIKDMLKLAYPDDIKERKGLTESRTQAYLYDGRTGERFERPTT 1258 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 +GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YV Sbjct: 1259 IGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYV 1318 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 LQEMLT+KSDDV GRT+VYESIV G E G PESFNVLVKE+++LGL I+LE S Sbjct: 1319 LQEMLTVKSDDVQGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS 1374 >gi|241765528|ref|ZP_04763490.1| DNA-directed RNA polymerase, beta subunit [Acidovorax delafieldii 2AN] gi|241364685|gb|EER59710.1| DNA-directed RNA polymerase, beta subunit [Acidovorax delafieldii 2AN] Length = 1370 Score = 1634 bits (4232), Expect = 0.0, Method: Composition-based stats. Identities = 693/1375 (50%), Positives = 969/1375 (70%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG ++++P L+++QK +Y FL + AP +R EGLQAAF + Sbjct: 1 MAYSYTERKRIRKSFGTRDSVLEVPYLLQMQKDAYTAFLQADKAPQKRTIEGLQAAFDAA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AKS 121 FPI + +G ++F+ Y P FDV +C R LT+A ++ ++LI++D + T +K Sbjct: 61 FPIVSHNGFVEMKFIEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKV 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 VKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G++ E IL+ F+ + Sbjct: 181 ARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRLM 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 + L G + D +G+ V+ K++T+ + L++ G + + D Sbjct: 241 DSGAQMEFVSERL-RGEVARFDITD-KSGKVVVAKDKRVTARHTRELEQSGTTHISVPED 298 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G VA +IV+ +TGEI +A D + E L+++ + ++D+ +Y + ++ AY+ T Sbjct: 299 FLIGRVVARNIVDADTGEIIAKANDELTEALLKKLRSAGVQDVQCIYTNELDQGAYMSQT 358 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N ++ Sbjct: 359 LRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKIG 418 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + EDI+A++KILVDLRNG G +DDID+LGNRRVR VGE+ +NQYR GL R Sbjct: 419 RDESTGPMVLSNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLAR 478 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH RR+ Sbjct: 479 IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRV 538 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIETP Sbjct: 539 SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETP 598 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V DGKVTN++ YLSA+EE IAQAN+ LD+DG T +LV R GE IL +++ Sbjct: 599 YRRVVDGKVTNEIDYLSAIEEGKYVIAQANAVLDKDGRLTGDLVSAREKGESILCGADRV 658 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SP Q+VS+AASL+PFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A Sbjct: 659 QYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVAAV 718 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R GIV+ VDA RIV+R + + GVDIY L+K+QRSNQNT ++QRP+ Sbjct: 719 DSGTVVTATRGGIVDYVDATRIVVRVNDEEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPI 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD++ + D++ADG STD G++A+G+NML+AFMPW+GYNFEDS+LISER+V+ED +TS Sbjct: 779 VKKGDKLVKGDVVADGASTDFGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD LVGK+TPK Sbjct: 839 IHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV G SGTV+DV++F R GI +++R+ + Sbjct: 899 GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGIQRDKRAQQIID 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ I++ + + R+ ++L G+ A GP+ K T + ++ + W Sbjct: 959 DELKRFRLDLNDQLRIVEADAFDRIEKLLNGRVANGGPQKLAKGTKIDKAYLASVEKFHW 1018 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + +++V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV++A+K Sbjct: 1019 FDIRPAEDEVATQLESIKNALEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK 1078 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMN+GQ+ E HL Sbjct: 1079 RRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPADIVLNPLGVPSRMNIGQVLEVHL 1138 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G++I +++ + S +R+FLE+V + E +S DD ++ +AE Sbjct: 1139 GWAGKGIGQRIGNML---QEQAKASEMRTFLEEVYNSRGRKEDLSQLSDDDLMAMAENLT 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADL----------DESGQSILYDGLTGEPFDRPVTV 1251 +GVP +TPVFDGA E+ I +ML++A E Q+ L+DG TG+ F+RP T+ Sbjct: 1196 NGVPYATPVFDGASEDEIKAMLKLAYPDELAERKGLTPERTQAYLFDGRTGDRFERPTTI 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAYVL Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDVVGRT+VYESIV G E G PESFNVLVKE+++LGL I+LE S Sbjct: 1316 QEMLTVKSDDVVGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS 1370 >gi|262392947|ref|YP_003284801.1| DNA-directed RNA polymerase subunit beta [Vibrio sp. Ex25] gi|262336541|gb|ACY50336.1| DNA-directed RNA polymerase beta subunit [Vibrio sp. Ex25] Length = 1342 Score = 1634 bits (4232), Expect = 0.0, Method: Composition-based stats. Identities = 708/1367 (51%), Positives = 972/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKSTEEILDLFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E G+++T+ ++ L++ GV + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIE--ANGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVASKDYINEATGEIIVNANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAQEQGTLDETDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA+EE IAQAN+ L+EDG+F +EL+ R GE L PRE Sbjct: 592 RRVVDGVVTDEVDYLSAIEEGQFVIAQANAKLNEDGTFADELITARQKGESGLHPREHAQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVSRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLIEGG-------------YSEAKLDTTDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G I+ DD V + + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFREFLQKVYDLGDTRQKVDIASLSDDEVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA EE+I ++L +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGAPEESIKALLELADLPTSGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|311109625|ref|YP_003982478.1| DNA-directed RNA polymerase subunit beta [Achromobacter xylosoxidans A8] gi|310764314|gb|ADP19763.1| DNA-directed RNA polymerase, beta subunit [Achromobacter xylosoxidans A8] Length = 1370 Score = 1634 bits (4232), Expect = 0.0, Method: Composition-based stats. Identities = 694/1375 (50%), Positives = 959/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++ ++P L+ Q SY FL + AP +R +GLQAAF S+ Sbjct: 1 MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTAPSDRVADGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P FDV +C R LTYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGMARLEFVSYVLGEPVFDVKECQQRGLTYASPLRAKVRLVLLDR--EVSKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ R+DRRRK+PVT A+GM E IL+ F+ + + Sbjct: 179 RVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILCKAIGMTPESILANFFDFDNFELKS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + G + D G+ ++E K++ + L+ L G++ + + D Sbjct: 239 EGAMMEFVPE-RWKGEMARFDISD-RDGKVIVEKDKRINAKHLRDLAAGGIQRISVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D I E L + S + DI LY + ++ YI TL Sbjct: 297 LYGRVLAKNIVDPDTGEVIANANDEITESVLGALRASNVYDIQALYTNDLDRGPYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL Sbjct: 357 RTDETADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGR 416 Query: 423 DTP-DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + EDI+ IK+LV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R Sbjct: 417 GEDITGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 477 VERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRV 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR+N YGF+ETP Sbjct: 537 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETP 596 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DGKV+ + YLSA+EE + IAQAN++LDE+G F ++LV CR AGE +L + Sbjct: 597 YRKIIDGKVSEQIDYLSAIEESHYVIAQANAALDEEGRFVDDLVACREAGETMLTAPANV 656 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 657 HYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPVVGTGIERTVAV 716 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 717 DSGTTVQALRGGLVDHVDAERVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPI 776 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD+V + D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TS Sbjct: 777 VKRGDKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTS 836 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 +HIEE V+ARDTKLGPEEITRDI N++E L +D+ GI +GAEV+ D+LVGK+TPK Sbjct: 837 VHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGITYIGAEVSADDVLVGKVTPK 896 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV++F R GI +++R+ S+ Sbjct: 897 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIID 956 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +++ +D +D+ I++ + + R+ ++L + GP+ K ++ +++ R QW Sbjct: 957 DELRRYRQDLNDQLRIVENDQFDRIEKMLVNKTVNGGPRKLAKGATITKAYLADLDRWQW 1016 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE +E K E + + F+ K +K+ GD++PPGVL+++KV++A+K Sbjct: 1017 FDIRLADEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVK 1076 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VSRI P EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1077 RRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHL 1136 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G +I ++ D + + +R++L+KV T +I + D+ V+ +A+ K Sbjct: 1137 GWAAKGVGHRIADMLRDERT-AQVKNIRAYLDKVYNTTGTGARIDELTDEEVMEMAQNLK 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDE----------SGQSILYDGLTGEPFDRPVTV 1251 +GVP +TPVFDGA EE I +ML +A DE Q+ LYDG TGE F+RPVTV Sbjct: 1196 NGVPFATPVFDGATEEEITTMLELAYPDEVAKRMALTPSRTQAWLYDGRTGEQFERPVTV 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDD+ GRT+VYE+IV G+ + G PESFNVLVKE+++L L +DLE + Sbjct: 1316 QEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN 1370 >gi|158513683|sp|A3M1G3|RPOB_ACIBT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|193076143|gb|ABO10757.2| RNA polymerase subunit B [Acinetobacter baumannii ATCC 17978] Length = 1357 Score = 1634 bits (4232), Expect = 0.0, Method: Composition-based stats. Identities = 715/1369 (52%), Positives = 979/1369 (71%), Gaps = 21/1369 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG ++E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D + G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDITDNE-GKVIVEQGKRINARHVRQMEAAGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + GE+ A ++ + + ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAEDITLRD-GEVIA-ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +DR++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADLTRDREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+DV YLSA+EE IAQA+S++D+DG+ TEE V R GE + Sbjct: 593 FGFLETPYRKVIDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G++E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L GQ + G K+ LS DL+S Sbjct: 953 RALAIEKAQLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGG-GSTKRGDKLSEDLLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L +A ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALAGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++ID Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINID 1357 >gi|77918308|ref|YP_356123.1| DNA-directed RNA polymerase subunit beta [Pelobacter carbinolicus DSM 2380] gi|88909624|sp|Q3A6Q4|RPOB_PELCD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|77544391|gb|ABA87953.1| DNA-directed RNA polymerase subunit beta [Pelobacter carbinolicus DSM 2380] Length = 1368 Score = 1634 bits (4232), Expect = 0.0, Method: Composition-based stats. Identities = 724/1363 (53%), Positives = 994/1363 (72%), Gaps = 12/1363 (0%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK F II+IP+LI++QK SY FL + P R N GL+A F+SVFPI FS Sbjct: 11 LRKHFSTIKGIIEIPNLIDIQKNSYKRFLQAGLPPSARKNIGLEAVFRSVFPIRDFSETC 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 L++VSY PK+DV +C R +T+A P+K+ +RL+ +DVD+ +G ++I+DIKEQ +Y Sbjct: 71 SLDYVSYSLGTPKYDVGECHQRGMTFAAPVKVCVRLVSWDVDKESGVQAIRDIKEQEVYF 130 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++PLMT++GTF+I G +R++VSQLHRSPG+ FDHDKG+ SGK+LY R+IP +G W+ Sbjct: 131 GEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKILYNARVIPYRGSWL 190 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D +FD KD+++VRIDRRRK+P T L ALG +EE+L+ +Y + GD + ++ Sbjct: 191 DFDFDHKDLLYVRIDRRRKLPATVLLKALGYSAEELLNYYYQVETVTVDGDSFKKKVN-L 249 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 DL+ G + S+ ++ D GE ++++ +K T ++ L + V+++ ++ + + G + DI Sbjct: 250 DLLAGQRASTDVLGND-GEIIVKANRKFTKAAIRKLADSNVEYIPVSEEEIVGKVASTDI 308 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 V+ TGE+ +E + I E LEE+ I + IL++D ++ Y+R TL+ D+ +D Sbjct: 309 VDVSTGEVIVECNEEISESKLEELRTRGIVEFNILFIDHLHVGPYLRETLLLDRMATPED 368 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 A ++IYR +RPGD T A ++F LFF+ ++YDLS VGR+K+N +L L +P+D + Sbjct: 369 ARIEIYRRLRPGDPPTIKSANALFESLFFNPERYDLSVVGRIKLNYKLGLQSPEDQTTLT 428 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 K+DI+ +++ L+ LR+G+GTIDDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER+S Sbjct: 429 KDDILEVVRYLIGLRDGRGTIDDIDHLGNRRVRAVGELLENQYRVGLVRMERAIKERMSL 488 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 ++DS+MP DLIN+KPV + V EFF SSQLSQ + N LS ITH RRLSALG GG+ R Sbjct: 489 QEVDSLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRE 548 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+++AR+N +GF+ETPYR V GKVTN Sbjct: 549 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRIVEQGKVTN 608 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 ++ Y SA+EE IAQAN+ LD+DG F ELV R GE +L+ RE+I +D SPKQ+V Sbjct: 609 EIRYFSALEEGGHAIAQANAPLDDDGRFLNELVNARQNGEFVLIQREEIGLMDVSPKQLV 668 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S+AASLIPFLENDD+NR LMG NMQRQAVPLL+A+AP VGTGME +VA SGAA+VA+ Sbjct: 669 SVAASLIPFLENDDANRALMGSNMQRQAVPLLRADAPLVGTGMERIVAHDSGAAVVARHN 728 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G+VE VDA RIV++ EG++D +GVDIY L+KF RSNQNTC+NQ+P+VKVGD V Sbjct: 729 GVVESVDASRIVVKIDEGEVDEDGTGVDIYNLIKFARSNQNTCLNQKPIVKVGDRVASGG 788 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 IIADGPST+ G+LALG+N+LVAFMPW GYNFEDS+LISE++V ED +TSIHIEE E +AR Sbjct: 789 IIADGPSTEWGELALGQNVLVAFMPWEGYNFEDSILISEKLVKEDRYTSIHIEELECVAR 848 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLG EEIT DIPN+ E+ LK++DE GI+ +GAEV PGDILVGKITPKGE+ ++PEEKL Sbjct: 849 DTKLGKEEITNDIPNLGEDALKDLDESGIVRIGAEVKPGDILVGKITPKGETQLSPEEKL 908 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFGEKA DVRDTSLR+P GV G V+ R+F+R G DK+ R+ +E+ +IE L +D+ Sbjct: 909 LRAIFGEKAGDVRDTSLRLPPGVEGVVIGARVFSRKGSDKDSRTEYIEKTEIEKLLKDQH 968 Query: 973 DEQVILDRNIYSRLMEILCGQNAVS------GPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 DE I+ + + +L +L GQ + S G + + ++S++++E P ++W + ++ Sbjct: 969 DEIRIIRESTHGKLESLLVGQTSASALFDAAGKELLGQGEKITSEVLAEVPFARWREISL 1028 Query: 1027 QDEKVQ-RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 D + ++ + +++ F +KIEKI+ GDD+PPGV+++VKV++A+KR + Sbjct: 1029 LDASENEEKLSAIMTSLAQREELIKAVFADKIEKIKRGDDLPPGVIKMVKVYIAIKRKLS 1088 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG++SR+LP EDMP++ DGTPV+IVLNPLGVPSRMNVGQI ETHLG A Sbjct: 1089 VGDKMAGRHGNKGVLSRVLPEEDMPYMADGTPVEIVLNPLGVPSRMNVGQILETHLGLAA 1148 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 GLG +I+ ++ Y +R+ + + E + DD V+++A Q GVP Sbjct: 1149 RGLGVQIQEHLDRYYTP---EAMRTKIGECYEDDRVAEFVDALPDDEVMQLARQLSRGVP 1205 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 +++PVF+G EE + + + A SGQ LY+G TGE F VTVG +YMLKL+H+V D Sbjct: 1206 MASPVFEGVTEEQMKNQMERAGFASSGQMTLYNGKTGEAFKEKVTVGIMYMLKLHHLVDD 1265 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAA+ LQE LT+KSDDV GR Sbjct: 1266 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAHALQEFLTVKSDDVTGR 1325 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 TR+YE+IV G T E G PESFNVL+KE+Q+L L ++L + Sbjct: 1326 TRMYEAIVKGKHTLEAGLPESFNVLIKELQSLCLDVELLEEQE 1368 >gi|326319225|ref|YP_004236897.1| DNA-directed RNA polymerase subunit beta [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376061|gb|ADX48330.1| DNA-directed RNA polymerase, beta subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1374 Score = 1634 bits (4232), Expect = 0.0, Method: Composition-based stats. Identities = 697/1376 (50%), Positives = 968/1376 (70%), Gaps = 16/1376 (1%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 + R+RK FG ++ +P L+++QK +Y FL ++AP +R NEGLQAAF + Sbjct: 4 TSTYSYTERKRIRKSFGSRDSVLKVPYLLQMQKDAYTAFLQADMAPQKRTNEGLQAAFNA 63 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AK 120 FPI + +G ++FV Y P FDV +C R LT+A ++ ++LI++D + T +K Sbjct: 64 AFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSK 123 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL+ Sbjct: 124 VVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLF 183 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G++ E IL+ F+ + Sbjct: 184 SARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRL 243 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 A D + G + D +G+ V+ K++T+ + L++ G + + Sbjct: 244 MDSGAQMEFVA-DRLKGEVARFDITD-KSGKVVVAKDKRITARHTRELEQSGTTHISVPE 301 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G VA +IV+G+TGEI +A + + E L+++ + ++D+ ++Y + ++ AYI Sbjct: 302 DFLIGRVVARNIVDGDTGEIVAKANEELTEALLKKLRSAGVQDLQVIYTNELDQGAYISQ 361 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N ++ Sbjct: 362 TLRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKI 421 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 D + +DI+A++KILVDLRNGKG +DDID+LGNRRVR VGE+ +NQYR GL Sbjct: 422 GRDESTGPMVLSNDDILAVVKILVDLRNGKGEVDDIDHLGNRRVRCVGELAENQYRTGLA 481 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH RR Sbjct: 482 RIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRR 541 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIET Sbjct: 542 VSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIET 601 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR+V DGKVT+ + YLSA+EE IAQAN++LD +G T +LV R GE L+ E+ Sbjct: 602 PYRRVVDGKVTDQIDYLSAIEEGKYVIAQANATLDAEGRLTGDLVSAREKGESTLLSAER 661 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + ++D SP Q+VS+AASL+PFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A Sbjct: 662 VQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVAA 721 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG + A R GIV+ VDA RIV+R + + GVDIY L+K+QRSNQNT ++QRP Sbjct: 722 VDSGTVVTANRGGIVDYVDATRIVVRVNDAEAVAGEVGVDIYNLIKYQRSNQNTNIHQRP 781 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK GD + + D+IADG STDLG++A+G+NML+AFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 782 IVKKGDVLAKGDVIADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAEDRYT 841 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD LVGK+TP Sbjct: 842 SIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTP 901 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G SGTV+DV++F R GI +++R+ + Sbjct: 902 KGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGIQRDKRAQQII 961 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 ++++ D +D+ I++ + + R+ ++L G+ A GP+ K T + ++ + Sbjct: 962 DDELKRFRLDLNDQLRIVEADAFDRIEKLLNGRVANGGPQKLAKGTKIDKAYLASVEKFH 1021 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ +++V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV++A+ Sbjct: 1022 WFDIRPAEDEVATQLESIKNALEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAV 1081 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMN+GQ+ E H Sbjct: 1082 KRRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPADIVLNPLGVPSRMNIGQVLEVH 1141 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA G+G++I ++ + + +R FLE+V + E +S DD V+ +A Sbjct: 1142 LGWAGKGIGQRIGDML---RDQAKAAEMRKFLEEVYNSRGRKEDLSMLSDDEVMAMAGNL 1198 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLD----ESG------QSILYDGLTGEPFDRPVT 1250 +GVP +TPVFDGA E I ML++A D G Q+ LYDG TGE F+RP T Sbjct: 1199 TNGVPYATPVFDGASEAEIKDMLKLAYPDDIKERKGLTDSRTQAYLYDGRTGEQFERPTT 1258 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 +GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YV Sbjct: 1259 IGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYV 1318 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 LQEMLT+KSDDV GRT+VYESIV G E G PESFNVLVKE+++LGL I+LE S Sbjct: 1319 LQEMLTVKSDDVQGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS 1374 >gi|37912997|gb|AAR05326.1| DNA-directed RNA polymerase beta subunit [uncultured marine alpha proteobacterium HOT2C01] Length = 1367 Score = 1634 bits (4231), Expect = 0.0, Method: Composition-based stats. Identities = 795/1365 (58%), Positives = 1036/1365 (75%), Gaps = 4/1365 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA + F RVRK FGK E+ P+LIE+QK SY+ FL+ P ERP++GLQ FK Sbjct: 1 MANTLSFTERKRVRKNFGKLKEVSKFPNLIEIQKKSYEDFLLEEENPSERPDKGLQKVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFP+ FSG+A +E++ Y+F PKFDVD+C RD TYA PL + LRLIVFD+DE T ++ Sbjct: 61 SVFPLEDFSGSARIEYIEYDFQSPKFDVDECRQRDKTYAAPLNVKLRLIVFDIDEETESR 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KDIKEQ IY+ DLPLMT+ GTF+ G +R+VVSQ+HRSPG+ FDHD G+ SGKLL+ Sbjct: 121 TVKDIKEQEIYLCDLPLMTQKGTFITNGTERVVVSQMHRSPGVFFDHDNGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 R+IP +G W+DIEFD KDIIH RIDR++K+P+T+FLMA+G+ +EILS FY YS Sbjct: 181 GARVIPYRGSWLDIEFDHKDIIHCRIDRKKKIPITTFLMAMGIKRDEILSLFYNTETYSL 240 Query: 241 --RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + W + ++ G K+ SLV+ G+ ++ G K+ L K L G+K L + Sbjct: 241 NTKDGKWKVGFNPKNIKTG-KLQKSLVNAADGKVAVKQGTKINPALAKKLFNDGLKNLLL 299 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G ++A+DI+N +TGEIY E+ D I +++E++ +I IP+L +D +N ++I Sbjct: 300 EDDELIGKFIADDIINEKTGEIYFESSDEIVPETIEKMKELKISKIPVLEIDGINIGSFI 359 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 R+TL DKN ++A+++IY+V+RPG+ A +FN LFF S+KYDLS VGRVKMN Sbjct: 360 RDTLRVDKNFSPEEAVVEIYKVLRPGEPPNLETAFEVFNSLFFKSEKYDLSDVGRVKMNY 419 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 RLNL+ D V +R ED+I +IK ++DLR GKG +DDID+LGNRRVRSVGE+++NQ+R+G Sbjct: 420 RLNLECSDTVTVLRSEDVIEVIKTVMDLRTGKGEVDDIDHLGNRRVRSVGELVENQFRMG 479 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L+RMERSIKER++S+++D+ PQD+INAKP+V+++ EFF +SQLSQ + N L+ ITH Sbjct: 480 LIRMERSIKERMNSLEVDAATPQDIINAKPLVASLKEFFGTSQLSQFMDQTNPLAEITHK 539 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVHPTHYGRICP ET EG NIGL++SL S ARVN YGFI Sbjct: 540 RRLSALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASHARVNQYGFI 599 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E+PYRKV GKV+N+V YL AMEE + IAQANS LD+ GSF +LV CR G+ ++ Sbjct: 600 ESPYRKVIKGKVSNEVEYLPAMEEADYTIAQANSELDDRGSFVTKLVSCRRNGDFVMTVP 659 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 E+ID++D SPKQVVS AASLIPFLENDD+NR LMG NM RQAVPL++AE+P VGTG+E V Sbjct: 660 EEIDYMDVSPKQVVSCAASLIPFLENDDANRALMGSNMMRQAVPLIQAESPLVGTGVEKV 719 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA SG IVA R GIV+++D RIV+R E + SGVDIY L KFQRSNQ+TC+NQ Sbjct: 720 VAVDSGVTIVANRDGIVDKIDGKRIVVRVTEKIK-TTESGVDIYTLQKFQRSNQSTCINQ 778 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD+V + DIIADGPST G+L LGRN++VAFMPW GYNFEDS+LISE++V ED Sbjct: 779 RPLVKVGDQVSKGDIIADGPSTHFGELGLGRNVVVAFMPWRGYNFEDSILISEKIVQEDK 838 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVM+RDTKLG EEITRDIPN +E L+N+DE GI+ VGA+VNPGDILVGK+ Sbjct: 839 FTSIHIEEFEVMSRDTKLGSEEITRDIPNAGDEVLRNLDEAGIVYVGADVNPGDILVGKV 898 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESP+TPEEKLLRAIFGEKA DV+DTSLR+P G SG VVDV++FNR+GI+K++R++S Sbjct: 899 TPKGESPVTPEEKLLRAIFGEKATDVKDTSLRLPPGSSGIVVDVKVFNRYGIEKDDRALS 958 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ER++IE LA+D++ E IL+RNI RL+ ++ G++ P ++ + + Sbjct: 959 IERDEIEKLAKDREAELGILNRNIKERLVSLISGKSINESPGDIERQNNYDKATLLDVKL 1018 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 W+ +Q Q +++LK QY+ ++S ++ RF NK++K+Q GD++ PGV+++VKVFV Sbjct: 1019 DSLWKMKLQSSSDQNEIDNLKKQYDIARSAIQTRFDNKVDKVQRGDELLPGVMKMVKVFV 1078 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR +Q GDKMAGRHGNKG++S+I P EDMP+L+DG VDIVLNPLGVPSRMNVGQI E Sbjct: 1079 AVKRKLQPGDKMAGRHGNKGVISKIAPVEDMPYLEDGRTVDIVLNPLGVPSRMNVGQILE 1138 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC G+G+ I ++ YK + D S + LEKV G + +IS + +A Sbjct: 1139 THLGWACAGIGEIINKSLSQYKVSNDHSIIGQSLEKVYGKDQYKNEISSLSKEEQKELAM 1198 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 SGVP+ TPVFDGA E I+ ML A D+SGQ+ L+DGLTGE F+R VTVGYIYMLK Sbjct: 1199 NISSGVPIKTPVFDGASEAEISEMLGEAGFDKSGQTQLWDGLTGEKFERKVTVGYIYMLK 1258 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+K Sbjct: 1259 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVK 1318 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 SDDV GRT+VYE+I+ G D F++GTPESFNVL+KE+++LGL+I+L Sbjct: 1319 SDDVAGRTKVYETIIRGEDVFQSGTPESFNVLIKEIRSLGLNIEL 1363 >gi|68249112|ref|YP_248224.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae 86-028NP] gi|81336482|sp|Q4QN33|RPOB_HAEI8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|68057311|gb|AAX87564.1| DNA-directed RNA polymerase beta chain [Haemophilus influenzae 86-028NP] Length = 1343 Score = 1634 bits (4231), Expect = 0.0, Method: Composition-based stats. Identities = 706/1365 (51%), Positives = 967/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLS ++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSVIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKVDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINAMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN E GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMEPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|260582781|ref|ZP_05850568.1| DNA-directed RNA polymerase, beta subunit [Haemophilus influenzae NT127] gi|260094231|gb|EEW78132.1| DNA-directed RNA polymerase, beta subunit [Haemophilus influenzae NT127] Length = 1343 Score = 1634 bits (4231), Expect = 0.0, Method: Composition-based stats. Identities = 704/1365 (51%), Positives = 966/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAS 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLS VGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSAVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLSA++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVIDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKVERTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINAMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN + GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMDPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|182676594|sp|A5UH20|RPOB_HAEIG RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1343 Score = 1634 bits (4231), Expect = 0.0, Method: Composition-based stats. Identities = 706/1365 (51%), Positives = 967/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKISALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLS ++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSVIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKVDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINAMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN E GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMEPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|221069398|ref|ZP_03545503.1| DNA-directed RNA polymerase, beta subunit [Comamonas testosteroni KF-1] gi|220714421|gb|EED69789.1| DNA-directed RNA polymerase, beta subunit [Comamonas testosteroni KF-1] Length = 1370 Score = 1634 bits (4231), Expect = 0.0, Method: Composition-based stats. Identities = 696/1375 (50%), Positives = 969/1375 (70%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG ++++P L+++QK +Y FL ++AP +R +GLQAAF S Sbjct: 1 MAYSYTERKRIRKSFGSRDSVLEVPYLLQMQKDAYTAFLQADVAPKKRTIDGLQAAFNSA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFT-GAKS 121 FPI + +G ++FV Y P FDV +C R LT+A ++ ++LI++D + T +K Sbjct: 61 FPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTAQSKV 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 VKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KD+++ R+DRRRK+PV+ L A+GM E IL+TF+ + Sbjct: 181 ARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVSILLKAIGMTPETILATFFVNDNFRLM 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 A D + G + D +G+ V+ K++T+ + L++ G KF+ + D Sbjct: 241 DSGAQMEFVA-DRLKGEVARFDITD-KSGKVVVAKDKRITARHTRELEQSGTKFVSVPED 298 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G +A++IV+ +TGEI +A + + E L+++ + ++D+ +Y + ++ AYI T Sbjct: 299 FLLGRVLAKNIVDPDTGEIIAKANEELTEALLKKLRSAGVQDVQCIYTNELDQGAYISQT 358 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L TD+ D A + IYR+MRPG+ T +++F LF+++D YDLS VGR+K N ++ Sbjct: 359 LRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNADTYDLSRVGRMKFNAKIG 418 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + + EDI+A++KILVDLRNG+G +DDID+LGNRRVR VGE+ +NQYR GL R Sbjct: 419 REGATGPMVLSNEDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGLAR 478 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH RR+ Sbjct: 479 IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRV 538 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIETP Sbjct: 539 SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETP 598 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V DGKVT D+ YLSA+EE IAQAN+ LD G+ ELV R AGE LV E++ Sbjct: 599 YRRVVDGKVTMDIDYLSAIEEGKYVIAQANADLDAAGNLVGELVSAREAGESTLVSAERV 658 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SP Q+VS+AASLIPFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A Sbjct: 659 QYMDVSPAQIVSVAASLIPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVAAV 718 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + AKR GIV+ VDA RIVIR + + GVDIY L+K+QRSNQNT ++QRP+ Sbjct: 719 DSGTVVTAKRGGIVDYVDATRIVIRVNDDEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPI 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V GD++ + D++ADG STDLG++A+G+NML+AFMPW+GYN+EDS++I+ER+V++D +TS Sbjct: 779 VSRGDKLAKGDVLADGASTDLGEIAIGQNMLIAFMPWNGYNYEDSVMINERIVADDRYTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD+LVGK+TPK Sbjct: 839 IHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDVLVGKVTPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV G GTV+DV++F R GI +++R+ + Sbjct: 899 GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQIID 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ I++ + + R+ ++L G+ A GP+ K + + + W Sbjct: 959 DELKRFRLDLNDQLRIVEADAFDRIEKLLTGRVANGGPQKLSKGAKIDKAYLDGVEKFHW 1018 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + ++ V +ES+K E + + F+ K +K+ GD++P GVL++VKV++A+K Sbjct: 1019 FDIRPAEDDVAAQLESIKNSIEQQRHTFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK 1078 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I P EDMPFL DG+ DIVLNPLGVPSRMN+GQ+ E HL Sbjct: 1079 RRLQPGDKMAGRHGNKGVVSKITPVEDMPFLADGSTADIVLNPLGVPSRMNIGQVLEVHL 1138 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA GLG++I ++ + + +R+FLE++ E++S DD V+ +A++ Sbjct: 1139 GWAGKGLGQRIGDML---QKEARAAEVRAFLEEIYNRSGRKEELSQLDDGEVMSMAKELT 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDRPVTV 1251 +GVP +TPVFDGA E I ML++A D Q+ LYDG TGE F+RP TV Sbjct: 1196 TGVPFATPVFDGASEAEIKDMLKLAYPDDIAAAKGLTETRTQAYLYDGRTGERFERPTTV 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAYVL Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDVVGRT+VYESIV G + E G PESFNVLVKE+++LGL I+LE S Sbjct: 1316 QEMLTVKSDDVVGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGLDIELERS 1370 >gi|304414674|ref|ZP_07395727.1| DNA-directed RNA polymerase subunit beta [Candidatus Regiella insecticola LSR1] gi|304283175|gb|EFL91584.1| DNA-directed RNA polymerase subunit beta [Candidatus Regiella insecticola LSR1] Length = 1342 Score = 1634 bits (4231), Expect = 0.0, Method: Composition-based stats. Identities = 703/1364 (51%), Positives = 958/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + +GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----REGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL E+IL F+ K+ + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIMLRALSYTPEQILDLFFEKVGFEICD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++ + ++ L++ + + + + Sbjct: 235 NKLQMALIPERL-RGETASFDIK--ANGKIYVEKGQRIAARHVRQLEKDNINSIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D V+ TGE+ + L ++ S + + L+ + +++ AYI TL Sbjct: 292 IVGKVVAKDYVDTSTGEVICAVNTELSLDLLAKLSKSGYKCVETLFTNDLDHGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLSTVGR+K N L+ Sbjct: 352 RVDPTNDRLGALVEIYRMMRPGEPPTRDAAENLFENLFFSEDRYDLSTVGRMKFNRSLSR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DQIEGSGILSKEDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D++++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLETLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPVETPEGPNIGLINSLSVYARTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V G VTN++ YL A+EE N IAQANS+LDE F ++L+ CR E L RE++D Sbjct: 592 RCVQGGVVTNEIRYLYAIEEGNYVIAQANSNLDEKNCFIDDLITCRNKDESSLFSREQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+AE P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAEKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VA+R G ++ VDA RIVI+ E ++ +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTSVARRGGKIQYVDASRIVIKVNEKEMKSDEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + D + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLNDSIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVTSGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G+DK++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVDKDKRALDIEKM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+E +D +E IL+ + +R+ +L + S+ + + P +W Sbjct: 952 QLEQAKQDLKEELKILEAGLLARIRAVLIAGG-------------IESEKLDKLPSERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE+ Q +E L Q + KS E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 GLCLSDEEKQCQLEQLAEQCDELKSEFEKKLEGKRRKIIQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDEYGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G+KI +++ ++ + + ++ + DD VL +AE K Sbjct: 1119 MAAKGIGEKINAMLRKHEKVAKLREFIQKAYDLGDHVCQKVDLNTFSDDEVLNLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P+++PVFDGA E I +L++A L SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPITSPVFDGAKETEIKELLKLAGLPASGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Y LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAGYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342 >gi|147674155|ref|YP_001218596.1| DNA-directed RNA polymerase subunit beta [Vibrio cholerae O395] gi|146316038|gb|ABQ20577.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae O395] gi|227012184|gb|ACP08394.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae O395] Length = 1375 Score = 1634 bits (4231), Expect = 0.0, Method: Composition-based stats. Identities = 714/1366 (52%), Positives = 977/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 35 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 90 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 91 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 148 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 149 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 208 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L LG S EIL F+ K+ + + Sbjct: 209 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRVLGKTSAEILDIFFEKVNFEVKD 268 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 269 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 325 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 326 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 385 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF +++YDLSTVGR+K N + Sbjct: 386 RVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGR 445 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 446 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 505 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 506 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 565 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 566 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 625 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L PRE +D Sbjct: 626 RRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVD 685 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 686 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 745 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 746 SGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 805 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 806 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 865 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 866 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 925 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 926 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 985 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + +S R +W Sbjct: 986 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLSSIERKKWL 1032 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +++E++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1033 EQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1092 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1093 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1152 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G IS+ D+ V +A Sbjct: 1153 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNL 1209 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1210 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1269 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1270 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1329 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1330 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1375 >gi|119713232|gb|ABL97298.1| DNA-directed RNA polymerase beta subunit [uncultured marine bacterium HF10_12C08] Length = 1367 Score = 1634 bits (4231), Expect = 0.0, Method: Composition-based stats. Identities = 796/1365 (58%), Positives = 1035/1365 (75%), Gaps = 4/1365 (0%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M + F RVRK FGK E+ P+LIE+QK SY+ FL+ + ERP++GLQ FK Sbjct: 1 MVNTLSFTERKRVRKNFGKLKEVSKFPNLIEIQKKSYEDFLLEHANSSERPDKGLQRVFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFP+ FSG+A +E++ Y F PKFDVD+C RD TYA PL + LRLIVFD+DE T ++ Sbjct: 61 SVFPLEDFSGSARIEYIDYNFQSPKFDVDECRQRDKTYAAPLNVKLRLIVFDIDEETESR 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KDIKEQ IY+ DLPLMT+ GTF+ G +R+VVSQ+HRSPG+ FDHD G+ SGKLL+ Sbjct: 121 TVKDIKEQEIYLCDLPLMTQKGTFITNGTERVVVSQMHRSPGVFFDHDNGKTHSSGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS- 239 R+IP +G W+DIEFD KDIIH RIDR++K+P+T+FLMA+G+ +EILS FY YS Sbjct: 181 GARVIPYRGSWLDIEFDHKDIIHCRIDRKKKIPITTFLMAMGIKRDEILSLFYGTETYSL 240 Query: 240 -QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + D W + ++ G K+ SLV+ G+ ++ G K+ + K L G+K L + Sbjct: 241 SIKDDKWKVGFNPKNIKTG-KLQKSLVNAANGKVAVKQGTKINPAIAKKLFNDGLKNLLL 299 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G ++AEDI+N +TGEIY E+ D I +++E+I +I IP+L +D +N ++I Sbjct: 300 EDDELIGKFIAEDIINEKTGEIYFESSDEITSETIEKIKELKISKIPVLEIDGINIGSFI 359 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 R+TL DKN ++A+++IY+V+RPG+ A +FN LFF S+KYDLS VGRVKMN Sbjct: 360 RDTLRVDKNLSPEEAVVEIYKVLRPGEPPNLETAFEVFNSLFFKSEKYDLSDVGRVKMNY 419 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 RLN++ D V +R ED+I +IK ++DLR GKG +DDID+LGNRRVRSVGE+++NQ+R+G Sbjct: 420 RLNIECSDTVTVLRSEDVIEVIKTVMDLRTGKGEVDDIDHLGNRRVRSVGELVENQFRMG 479 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L+RMERSIKER++S+++D+ PQD+INAKP+V+++ EFF +SQLSQ + N L+ ITH Sbjct: 480 LIRMERSIKERMNSLEVDAATPQDIINAKPLVASLKEFFGTSQLSQFMDQTNPLAEITHK 539 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVHPTHYGRICP ET EG NIGL++SL S ARVN YGFI Sbjct: 540 RRLSALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASHARVNQYGFI 599 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E+PYRKV GKV+N+V YL AMEE + IAQANS LD+ GSF +LV CR G+ ++ Sbjct: 600 ESPYRKVIKGKVSNEVEYLPAMEEADFTIAQANSELDDKGSFITKLVSCRRNGDFVMTVP 659 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 E+ID++D SPKQVVS AASLIPFLENDD+NR LMG NM RQAVPL++AE+P VGTG+E V Sbjct: 660 EEIDYMDVSPKQVVSCAASLIPFLENDDANRALMGSNMMRQAVPLIQAESPLVGTGVEKV 719 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA SG IVA R GIV+++D RIV+R E + SGVDIY L KFQRSNQ+TC+NQ Sbjct: 720 VAVDSGVTIVANRDGIVDKIDGKRIVVRVTEKIK-TTESGVDIYTLQKFQRSNQSTCINQ 778 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLVKVGD+V + DIIADGPST G+L LGRN++VAFMPW GYNFEDS+LISE++V ED Sbjct: 779 RPLVKVGDKVSKGDIIADGPSTHFGELGLGRNVVVAFMPWRGYNFEDSILISEKIVQEDK 838 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFEVM+RDTKLG EEITRDIPN +E L+N+DE GI+ VGA+VNPGDILVGK+ Sbjct: 839 FTSIHIEEFEVMSRDTKLGSEEITRDIPNAGDELLRNLDEAGIVYVGADVNPGDILVGKV 898 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGESP+TPEEKLLRAIFGEKA DV+DTSLR+P G SG VVDV++FNR+GI+K++R++S Sbjct: 899 TPKGESPVTPEEKLLRAIFGEKATDVKDTSLRLPPGSSGIVVDVKVFNRYGIEKDDRALS 958 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +ER++IE LA D++ E IL+RNI RL+ ++ +N + + + +S+ Sbjct: 959 IERDEIEKLANDREAELGILNRNIKERLILLINDKNISDTSEDIESMSKYDKATLSDIKL 1018 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 W+ +++ Q VE+LK QY+ ++S ++ RF NK++K+Q GD++ PGV+++VKVFV Sbjct: 1019 DSLWKMRLENSNDQNEVENLKKQYDIARSAIQSRFDNKVDKVQRGDELLPGVMKMVKVFV 1078 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR +Q GDKMAGRHGNKG++S+I P EDMP+L+DG VDIVLNPLGVPSRMNVGQI E Sbjct: 1079 AVKRKLQPGDKMAGRHGNKGVISKIAPVEDMPYLEDGRTVDIVLNPLGVPSRMNVGQILE 1138 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGWAC G+G+ I + YK++ D S + LEKV G + +IS D +A Sbjct: 1139 THLGWACAGIGEIINKSLAQYKSSNDHSVIGQSLEKVYGKDQYKNEISSLSKDEQKELAM 1198 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 SGVP+ TPVFDGA E I+ ML A D+SGQ+ L+DGLTGE F+R VTVGYIYMLK Sbjct: 1199 NIASGVPIKTPVFDGASEAEISEMLGEAGFDKSGQTQLWDGLTGEKFERKVTVGYIYMLK 1258 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+K Sbjct: 1259 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVK 1318 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 SDDV GRT+VYE+I+ G D F++GTPESFNVL+KE+++LGL+I+L Sbjct: 1319 SDDVAGRTKVYETIIRGEDVFQSGTPESFNVLIKEIRSLGLNIEL 1363 >gi|28899696|ref|NP_799301.1| DNA-directed RNA polymerase subunit beta [Vibrio parahaemolyticus RIMD 2210633] gi|153838924|ref|ZP_01991591.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus AQ3810] gi|260364010|ref|ZP_05776744.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus K5030] gi|260878164|ref|ZP_05890519.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus AN-5034] gi|260897873|ref|ZP_05906369.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus Peru-466] gi|41017994|sp|Q87KQ4|RPOB_VIBPA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|28807948|dbj|BAC61185.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149747632|gb|EDM58556.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus AQ3810] gi|308085539|gb|EFO35234.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus Peru-466] gi|308090227|gb|EFO39922.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus AN-5034] gi|308115549|gb|EFO53089.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus K5030] Length = 1342 Score = 1634 bits (4231), Expect = 0.0, Method: Composition-based stats. Identities = 708/1367 (51%), Positives = 971/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKSTEEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E G+++T+ ++ L++ GV + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIES--NGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVASKDYINEATGEIIVNANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAQEQGTLDETDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA+EE IAQAN+ L+EDG+F +EL+ R GE L PRE Sbjct: 592 RRVVDGVVTDEVDYLSAIEEGQFVIAQANAKLNEDGTFADELITARQKGESGLHPREHAQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLIEGG-------------YSEAKLDATDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G I+ DD V + + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFREFLQKVYDLGDTRQKVDIASLSDDEVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E +I ++L +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGAPEASIKALLELADLPTSGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|319897971|ref|YP_004136168.1| RNA polymerase, beta subunit [Haemophilus influenzae F3031] gi|317433477|emb|CBY81860.1| RNA polymerase, beta subunit [Haemophilus influenzae F3031] Length = 1343 Score = 1634 bits (4230), Expect = 0.0, Method: Composition-based stats. Identities = 705/1365 (51%), Positives = 966/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLS ++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSVIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+++ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRSDKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRHLLISSGA-------------DATQLDNLDRAKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINAMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN E GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMEPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|301169230|emb|CBW28827.1| RNA polymerase, beta subunit [Haemophilus influenzae 10810] Length = 1343 Score = 1634 bits (4230), Expect = 0.0, Method: Composition-based stats. Identities = 706/1365 (51%), Positives = 967/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E++FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLS ++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSVIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKVERTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINAMLKQKQEVEKLRSYVQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN E GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMEPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|328471083|gb|EGF41989.1| DNA-directed RNA polymerase subunit beta [Vibrio parahaemolyticus 10329] Length = 1342 Score = 1634 bits (4230), Expect = 0.0, Method: Composition-based stats. Identities = 707/1367 (51%), Positives = 971/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKSTEEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E G+++T+ ++ L++ GV + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIES--NGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVASKDYINEATGEIIVNANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAQEQGTLDETDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA+EE IAQAN+ L+EDG+F +EL+ R GE L PRE Sbjct: 592 RRVVDGVVTDEVDYLSAIEEGQFVIAQANAKLNEDGTFADELITARQKGESGLHPREHAQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLIEGG-------------YSEAKLDATDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G I+ DD V + + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFREFLQKVYDLGDTRQKVDIASLSDDEVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E +I ++L +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGAPEASIKALLELADLPTSGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|293602648|ref|ZP_06685090.1| DNA-directed RNA polymerase subunit beta [Achromobacter piechaudii ATCC 43553] gi|292818958|gb|EFF77997.1| DNA-directed RNA polymerase subunit beta [Achromobacter piechaudii ATCC 43553] Length = 1370 Score = 1634 bits (4230), Expect = 0.0, Method: Composition-based stats. Identities = 691/1375 (50%), Positives = 957/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++ ++P L+ Q SY FL + AP +R +GLQAAF S+ Sbjct: 1 MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTAPSDRVADGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY P FDV +C R LTYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGMARLEFVSYVLGEPVFDVKECQQRGLTYASPLRAKVRLVLLDR--EVSKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ R+DRRRK+PVT A+GM E IL+ F+ + + Sbjct: 179 RVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILCKAIGMTPESILANFFDFDNFELKS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + G + D G+ ++E K++ + L+ L G++ + + D Sbjct: 239 EGAMMEFVPE-RWKGEMARFDISD-RDGKVIVEKDKRINAKHLRDLAAGGIQRISVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A++IV+ +TGE+ A D I E L + S + DI LY + ++ YI TL Sbjct: 297 LYGRVLAKNIVDEDTGEVIANANDEITESVLGALRASNVYDIQTLYTNDLDRGPYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D+ A + IYR+MRPG+ T E++F LF+ + YDLS VGR+K+N RL Sbjct: 357 RTDETADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGR 416 Query: 423 DTP-DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + EDI+ IK+LV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R Sbjct: 417 GEDITGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 477 VERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRV 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR+N YGF+ETP Sbjct: 537 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETP 596 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DG+V+ + YLSA+EE + IAQAN++LDE G+F ++LV CR AGE +L + Sbjct: 597 YRKIIDGRVSEQIDYLSAIEESHYVIAQANAALDEQGAFVDDLVACREAGETMLTSPANV 656 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 657 HYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPVVGTGIERTVAV 716 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+ Sbjct: 717 DSGTTVQALRGGLVDHVDAERVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPI 776 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD+V + D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TS Sbjct: 777 VKRGDKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTS 836 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 +HIEE V+ARDTKLGPEEITRDI N++E L +D+ GI +GAEV+ D+LVGK+TPK Sbjct: 837 VHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGITYIGAEVSADDVLVGKVTPK 896 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV++F R GI +++R+ S+ Sbjct: 897 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIID 956 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +++ +D +D+ I++ + + R+ ++L + GP+ K ++ +++ R QW Sbjct: 957 DELRRYRQDLNDQLRIVENDQFDRIEKMLVNKTVNGGPRKLAKGATITKAYLADLDRWQW 1016 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE +E K E + + F+ K +K+ GD++PPGVL+++KV++A+K Sbjct: 1017 FDIRLADEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVK 1076 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VSRI P EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1077 RRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHL 1136 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G +I L+ D + + +R++L+KV T +I + D+ V+ +A+ K Sbjct: 1137 GWAAKGVGHRIADLLRDERT-AQVKNIRAYLDKVYNTTGSGARIDELTDEEVMEMAQNLK 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADL----------DESGQSILYDGLTGEPFDRPVTV 1251 +GVP +TPVFDGA EE I +ML +A Q+ L+DG TGE F+RPVTV Sbjct: 1196 NGVPFATPVFDGATEEEITTMLELAYPDDVAERMALTPSRTQAWLFDGRTGEKFERPVTV 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDD+ GRT+VYE+IV G+ + G PESFNVLVKE+++L L +DLE + Sbjct: 1316 QEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN 1370 >gi|269965860|ref|ZP_06179954.1| DNA-directed RNA polymerase beta subunit [Vibrio alginolyticus 40B] gi|269829524|gb|EEZ83764.1| DNA-directed RNA polymerase beta subunit [Vibrio alginolyticus 40B] Length = 1342 Score = 1634 bits (4230), Expect = 0.0, Method: Composition-based stats. Identities = 708/1367 (51%), Positives = 972/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKSTEEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E G+++T+ ++ L++ GV + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIE--ANGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVASKDYINEATGEIIVNANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAQEQGTLDETDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA+EE IAQAN+ L+EDG+F +EL+ R GE L PRE Sbjct: 592 RRVVDGVVTDEVDYLSAIEEGQFVIAQANAKLNEDGTFADELITARQKGESGLHPREHAQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVSRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLIEGG-------------YSEAKLDTTDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G I+ DD V + + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFREFLQKVYDLGDTRQKVDIASLSDDEVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA EE+I ++L +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGAPEESIKALLELADLPTSGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|299771831|ref|YP_003733857.1| DNA-directed RNA polymerase subunit beta [Acinetobacter sp. DR1] gi|284158679|gb|ADB80052.1| RNA polymerase beta subunit [Acinetobacter sp. DR1] gi|298701919|gb|ADI92484.1| DNA-directed RNA polymerase subunit beta [Acinetobacter sp. DR1] Length = 1362 Score = 1634 bits (4230), Expect = 0.0, Method: Composition-based stats. Identities = 710/1374 (51%), Positives = 975/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P++++ P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMEAPYLLSIQVDSYRTFLQGGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG ++E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L D + G + D D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVP-DRLRGEMAQFDIADND-GKIIVEQGKRINARHVRQMEASGLAKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI G++ A ++ + + ++ ++ IL+ + ++ +++ ++L Sbjct: 295 LYERITAEDIT-LRNGDVIA-ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADSL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTSGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+ V YLSA+EE IAQA+S++D+DG+ TEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDAVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RIPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G +E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGAIEYVDASRIVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNIIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L GQ + G K+ L D++S Sbjct: 953 RALAIEKAQLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGG-GSTKRGDKLVEDMLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPTDEAIAERLSQIQVFLKEKSAEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E + D V Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDAEV 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALSGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|229526890|ref|ZP_04416293.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae bv. albensis VL426] gi|229336059|gb|EEO01078.1| DNA-directed RNA polymerase beta subunit [Vibrio cholerae bv. albensis VL426] Length = 1341 Score = 1634 bits (4230), Expect = 0.0, Method: Composition-based stats. Identities = 714/1366 (52%), Positives = 977/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVLFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 235 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF +++YDLSTVGR+K N + Sbjct: 352 RVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L PRE +D Sbjct: 592 RRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLGSIERKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +++E++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G IS+ D+ V +A Sbjct: 1119 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|226939179|ref|YP_002794250.1| DNA-directed RNA polymerase subunit beta [Laribacter hongkongensis HLHK9] gi|226714103|gb|ACO73241.1| RpoB [Laribacter hongkongensis HLHK9] Length = 1389 Score = 1633 bits (4229), Expect = 0.0, Method: Composition-based stats. Identities = 705/1395 (50%), Positives = 970/1395 (69%), Gaps = 39/1395 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + + D R N GL+AAF+S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRETVLDVPFLLATQIDSYADFLQLGVPFDRRENAGLEAAFRSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A L+FV Y P FDV +C R +T+A PL+ +RL + D + + Sbjct: 61 FPILSNNGYARLDFVHYVLGDPPFDVPECQLRGITFAAPLRARIRLTILDR--ESSKPVV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT++G+F+I G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVRENDVYMGEIPLMTQNGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT+ L ALG E ILS FY + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTTLLKALGYSEERILSEFYDTDSFRLTR 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + L G S +V D G + + K++T+ ++ ++ G+ + + +D Sbjct: 239 DGVYMAVVPERL-RGEVAKSDIVAPD-GRVLAQKDKRITAKTIRDIQAAGITEIEVPADT 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A +++ ETGEI A + I E++L + +EI + +L+V+ +++ AYI T+ Sbjct: 297 LLGKVLARTVIHPETGEIIARANNEITEETLAKFAIAEIETVDVLFVNELDHGAYIAQTM 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 +D D+ A + IYR+MRPG+ T E++F LFF+ + YDLS VGR+K N R Sbjct: 357 RSDDVNDQLSARVAIYRMMRPGEPPTEDAVEALFQRLFFNEESYDLSRVGRMKFNRRAYA 416 Query: 423 DTPD-------------------DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRR 463 D + +DI+A+I +LV++RNG+G +DDID+LGNRR Sbjct: 417 HLDDKAPGWIKRFYERVGERGETGPGTLDYDDIVAVIMLLVEMRNGRGEVDDIDHLGNRR 476 Query: 464 VRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLS 523 VRSVGE+ +NQ+R GL+R+ER++KER++ + D++MP DLINAKPV +A+ EFF SSQLS Sbjct: 477 VRSVGELAENQFRAGLVRVERAVKERLNQAESDNLMPHDLINAKPVSAAIKEFFGSSQLS 536 Query: 524 QLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLV 583 Q + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL+ Sbjct: 537 QFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 596 Query: 584 SSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEE 643 +SL +AR N YGF+ETPYR+V D KVT+ + YLSA+EE IAQAN++L+ DG+ +E Sbjct: 597 NSLAIYARTNDYGFLETPYRRVVDSKVTDQIDYLSAIEEGRYVIAQANATLNADGTLVDE 656 Query: 644 LVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPL 703 LV CR GE IL +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP Sbjct: 657 LVTCREKGETILATPDRVQYMDVATSQVVSVAASLIPFLEHDDANRALMGANMQRQAVPC 716 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 L+AE PFVGTG+E VA SG AI A+R G+V+ VDA R+VIR + + GVDIY Sbjct: 717 LRAEKPFVGTGIERAVAVDSGTAIAAQRGGVVDYVDATRVVIRVNDDEAVAGEVGVDIYN 776 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 L+K+ RSNQNT +NQRP+VKVGD V R D+IADG STDLG+LALG+NM +AFMPW+GYN+ Sbjct: 777 LVKYTRSNQNTNINQRPIVKVGDVVARGDVIADGASTDLGELALGQNMTIAFMPWNGYNY 836 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIIC 883 EDS+LISER+V++D +TSIHIEE V+ARDTKLGPEEITRDIPN+SE +D+ GI+ Sbjct: 837 EDSVLISERVVADDRYTSIHIEELSVVARDTKLGPEEITRDIPNLSERMQGRLDDAGIVY 896 Query: 884 VGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVR 943 +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G+ GTV+DV+ Sbjct: 897 IGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGMQGTVIDVQ 956 Query: 944 IFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK 1003 +F R GI++++R+ S+ +++ D +D+ I + + +SR+ ++ G+ A GPK Sbjct: 957 VFTREGIERDKRAQSIIDAELKRYRLDLNDQVRIFENDAFSRIERLIIGKVANGGPKRLP 1016 Query: 1004 KSTVLSSDLISE-YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 K T + + ++ + W+ + DE + R +E +K + +++F++K K+ Sbjct: 1017 KGTAIDLEYLNSLLSKHDWFDIRMADEDIARQLELMKESLAQKRVEFDEKFEDKKRKLTQ 1076 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++PPGV ++VKV++A+KR +Q GDKMAGRHGNKG+VS+ILP EDMP++ DGTPVDIVL Sbjct: 1077 GDELPPGVQKMVKVYIAVKRRLQPGDKMAGRHGNKGVVSKILPVEDMPYMADGTPVDIVL 1136 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182 NPLGVPSRMN+GQI E HLGWA G+G++ ++ KA ++ LR+++EKV + Sbjct: 1137 NPLGVPSRMNIGQILEVHLGWAGKGIGQQFDKML---KAEAAVADLRAYIEKVYNSAGKQ 1193 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G---- 1232 E I+ DD + +AE + G+P STPVFDGA EE I ML +A DE G Sbjct: 1194 EDIAGLSDDEIRMLAENLRRGMPFSTPVFDGAKEEEIRKMLDLAYPDEDPRTPQLGFNGS 1253 Query: 1233 --QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 Q L+DG +GE FDR VTVG ++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ G Sbjct: 1254 KTQMTLFDGRSGEAFDRKVTVGVMHFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFG 1313 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESFNVL Sbjct: 1314 GQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVL 1373 Query: 1351 VKEMQALGLSIDLEN 1365 VKE+++LGL IDLE Sbjct: 1374 VKEIRSLGLDIDLER 1388 >gi|78099450|gb|ABB20861.1| RNA polymerase subunit B [Acinetobacter johnsonii] Length = 1362 Score = 1633 bits (4229), Expect = 0.0, Method: Composition-based stats. Identities = 713/1374 (51%), Positives = 971/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPSVMDAPYLLAIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLILKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ VRIDRRRK+ T L ALG ++ +IL FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVFVRIDRRRKLLATVVLRALGYNNAKILDLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G +VD D G+ ++E GK++ + ++ ++ G++ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDIVDND-GKTIVEQGKRINARHVRQMEAAGLEKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AED + + G++ A ++ + + ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAED-IPLKDGDVIA-ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDI ++K LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDITDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKCNN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S +D+DG+ TEE V R G+ + Sbjct: 593 FGFLETPYRKVLDGRVTDEVEYLSAIEEVGTVIAQADSGVDKDGNLTEEFVSVRHQGDFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA SG ++A R G +E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVAHDSGVCVIAGRGGRIEFVDASRVVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LVK+GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVKLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS D++S Sbjct: 953 RAQAIEKAQLDSYRKDLKEEYKIFEEAARERIVRLLTGQESNGGGTT-KRGDKLSVDVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPTDEAIAERLTQIQVFLKEKSFEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ KA + LR FL+K+ G E + DD + Sbjct: 1132 QILETHLGMAAKGLGEEIDKML---KAQRTVLELRGFLDKIYNKVGGEQEDLDSLTDDEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ ++GVP++TPVFDGA+E I +L +A++ +GQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LVLSGNLRAGVPLATPVFDGAEESQIKDLLELANISRTGQTVLYDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|253998007|ref|YP_003050070.1| DNA-directed RNA polymerase subunit beta [Methylovorus sp. SIP3-4] gi|313200075|ref|YP_004038733.1| DNA-directed RNA polymerase subunit beta [Methylovorus sp. MP688] gi|253984686|gb|ACT49543.1| DNA-directed RNA polymerase, beta subunit [Methylovorus sp. SIP3-4] gi|312439391|gb|ADQ83497.1| DNA-directed RNA polymerase, beta subunit [Methylovorus sp. MP688] Length = 1390 Score = 1633 bits (4229), Expect = 0.0, Method: Composition-based stats. Identities = 700/1397 (50%), Positives = 961/1397 (68%), Gaps = 40/1397 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + ++P L+ +Q SY FL N+ D+R N GLQA F SV Sbjct: 1 MSYSFTEKKRIRKSFAKRESVQEVPYLLAMQLESYAAFLQANVPVDKRENAGLQATFNSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A L++VSY FDV +C R LTYA PL++ +RL + D ++ Sbjct: 61 FPIVSHSGNARLDYVSYTLGQEPFDVKECQQRGLTYAAPLRVKVRLTIMDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG+LPLMT++G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGELPLMTENGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ R+DRRRK+PVT L ALG E+IL TFY + Sbjct: 179 RIIPYRGSWLDFEFDPKDYLYFRVDRRRKMPVTILLKALGFTPEQILETFYDLDTFHISA 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 F L L G ++D +G ++ K++T ++ +++ G+ + + + Sbjct: 239 KGVQFELLPERL-RGEVAKFDIIDG-SGNVIVAKDKRITVKHIRDMEKAGISKINVPEEF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++ I++ ETGE+ A D I E LE++ +++ I LY + +++ YI TL Sbjct: 297 VLGRALSSGIIDKETGEVVANANDEITESLLEKLREAKVGKINTLYANDLDHGDYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++F+ LFF+ ++YDLSTVGR+K N R Sbjct: 357 RIDEIPDQYSARVAIYRMMRPGEPPTEDAVEALFDGLFFNEERYDLSTVGRMKFNRRAFP 416 Query: 423 DTPDDVR--------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNR 462 + ++ + EDI+A+I +LV+LRNG+G IDDID+LGNR Sbjct: 417 EKIEERTAAWLRRFYEKSGARGAEGAPVLSNEDILAVIAVLVELRNGRGEIDDIDHLGNR 476 Query: 463 RVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQL 522 R+RSVGE+ +NQ+R GL+R+ER++KER+S + D++MP DLINAKPV SA+ EFF SSQL Sbjct: 477 RIRSVGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPVSSAIREFFGSSQL 536 Query: 523 SQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGL 582 SQ + N LS ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL Sbjct: 537 SQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHSTHYGRVCPIETPEGPNIGL 596 Query: 583 VSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE 642 ++SL ++R N YGF+ETPYR+V KV++ + +LSA+EE IAQANS LD++G F E Sbjct: 597 INSLALYSRTNQYGFLETPYRRVDGNKVSDKIDFLSAIEESQYMIAQANSELDKNGQFKE 656 Query: 643 ELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP 702 EL+ R E + +++ ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP Sbjct: 657 ELISARYHNEFTMAQPDRVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVP 716 Query: 703 LLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 L+AE VGTG+E VA SG + A+R GIV+ VD+ RIV+R + + GVDIY Sbjct: 717 CLRAEKAIVGTGIERTVAVDSGTTVQARRGGIVDYVDSGRIVVRVHDAEAAAGEVGVDIY 776 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 L+K+ RSNQNT +NQRPLVK+GD + R D+IADG STD+G+LALG+NMLVAFMPW+GYN Sbjct: 777 NLIKYTRSNQNTNINQRPLVKIGDVLARGDVIADGASTDMGELALGQNMLVAFMPWNGYN 836 Query: 823 FEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGII 882 FEDS+LISER+V++D +TSIHIEE V+ARDTKLG EEITRDI N+SE L +DE GII Sbjct: 837 FEDSILISERVVADDRYTSIHIEELSVVARDTKLGAEEITRDISNLSERMLGRLDESGII 896 Query: 883 CVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDV 942 +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV Sbjct: 897 YIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDV 956 Query: 943 RIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 ++F R GID++ R+ + +Q+ +D D+ I++ + + R+ ++ G+ A GP Sbjct: 957 QVFTREGIDRDTRAQQIIDDQLGHYKQDLADQMRIVEDDAFGRIRRLIEGKVATGGPNKL 1016 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 KK L+++ + R W+ + DE+ R +E LK ++ + +F+ K K+ Sbjct: 1017 KKGETLTAEYLESIGRYDWFDIRLSDEEAARQLEQLKDSLAQARVEFDSKFEEKKRKLTQ 1076 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++PPGV ++VKV++A+KR IQ GDKMAGRHGNKG+VS+I+P EDMP + DGTP+DIVL Sbjct: 1077 GDELPPGVQKMVKVYLAVKRRIQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPMDIVL 1136 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG-SH 1181 NPLGVPSRMN+GQI E HLGWA GLG +I +++ +A + +R F++++ Sbjct: 1137 NPLGVPSRMNIGQILEVHLGWAAKGLGMRIGAML---QAETKANEIRKFIDQIYNNSNGK 1193 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES---------- 1231 E I D+ V +A + GVP +TPVFDGA E+ I ML +A D+ Sbjct: 1194 KEDIKSLTDEEVFELARNLERGVPFATPVFDGATEQDIRDMLDLAFPDDDARTQQLQFAA 1253 Query: 1232 GQSI--LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNR 1289 G++ L DG +GEPF+RPVTVGY+++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 GKTQVKLIDGRSGEPFERPVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQF 1313 Query: 1290 GGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV GRT+VYE+IV G + G PESFNV Sbjct: 1314 GGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVSGRTKVYENIVKGEHKIDAGMPESFNV 1373 Query: 1350 LVKEMQALGLSIDLENS 1366 LVKE+++L + IDL+ + Sbjct: 1374 LVKEIRSLAIDIDLDRN 1390 >gi|15676060|ref|NP_273190.1| DNA-directed RNA polymerase subunit beta [Neisseria meningitidis MC58] gi|7225349|gb|AAF40591.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis MC58] Length = 1394 Score = 1633 bits (4228), Expect = 0.0, Method: Composition-based stats. Identities = 696/1400 (49%), Positives = 959/1400 (68%), Gaps = 42/1400 (3%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF Sbjct: 1 MCMNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFN 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 S+FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D Sbjct: 61 SIFPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKP 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL+ Sbjct: 119 TVKEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 SARIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYL 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + L A D + G ++D G ++ GK++T+ ++ + G+ L + Sbjct: 239 SSNGVQTDLVA-DRLKGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEP 296 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI N Sbjct: 297 ESLLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISN 356 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 TLRTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRT 416 Query: 421 NLDTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDN 458 + + + EDI+A I LV+LRNG G +DDID+ Sbjct: 417 YEQKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDH 476 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 LGNRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF Sbjct: 477 LGNRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFG 536 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 SSQLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG Sbjct: 537 SSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 596 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 NIGL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG Sbjct: 597 NIGLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDG 656 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 + +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQR Sbjct: 657 NLIGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQR 716 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG 758 QAVP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + G Sbjct: 717 QAVPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVG 776 Query: 759 VDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPW 818 VDIY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STD G+LALG+NM +AFMPW Sbjct: 777 VDIYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDFGELALGQNMTIAFMPW 836 Query: 819 HGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDE 878 +GYN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE Sbjct: 837 NGYNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDE 896 Query: 879 CGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGT 938 GI+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGT Sbjct: 897 SGIVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGT 956 Query: 939 VVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSG 998 V+DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A G Sbjct: 957 VIDVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGG 1016 Query: 999 PKGFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKI 1057 P K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K Sbjct: 1017 PMKLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKK 1076 Query: 1058 EKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTP 1117 +K+ GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG P Sbjct: 1077 KKLTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRP 1136 Query: 1118 VDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG 1177 VDIVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL ++ Sbjct: 1137 VDIVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNRLYN 1193 Query: 1178 TGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA----------- 1226 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GSGKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKL 1253 Query: 1227 DLDES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGG Sbjct: 1254 GFNDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGG 1313 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PE Sbjct: 1314 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPE 1373 Query: 1346 SFNVLVKEMQALGLSIDLEN 1365 SFNVLVKE+++LGL IDLE Sbjct: 1374 SFNVLVKEIRSLGLDIDLER 1393 >gi|255320109|ref|ZP_05361301.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter radioresistens SK82] gi|262379966|ref|ZP_06073121.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter radioresistens SH164] gi|255302827|gb|EET82052.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter radioresistens SK82] gi|262298160|gb|EEY86074.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter radioresistens SH164] Length = 1362 Score = 1633 bits (4228), Expect = 0.0, Method: Composition-based stats. Identities = 715/1374 (52%), Positives = 977/1374 (71%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P++++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMEAPYLLSIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T + ALG ++E+IL FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVMRALGYNNEQILDLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDIADND-GKVIVEQGKRINARHVRQMEASGLTKLPVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AED ++ ++G++ A ++ + + +I ++ ILY + ++ +++ +TL Sbjct: 295 LYERITAED-ISLKSGDVIA-ANTLLSHEIMVKIAEGGVKQFNILYTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTSGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKTNE 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S+LD+DG TEELV R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSALDKDGYLTEELVSVRYQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + E+I +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMAPERITHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++AKR G +E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIAKRGGTIEFVDASRVVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L Q + G K+ LS +L+S Sbjct: 953 RALAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKDQVSNGG-GNTKRGEKLSEELLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELIDLLEIQPSDEAIAERLTQIQVFLKEKSTEIDEKFAEKKRKLSTGDELTHGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS+ILP EDMP +G PVD+VLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSQILPVEDMPHDANGVPVDVVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ K I+ LR FL+K+ G E++ DD + Sbjct: 1132 QILETHLGLAAKGLGEQIDKML---KQQRAIAELRDFLDKIYNKVGGEQEQLDTLTDDEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L++A GVP++TPVFDGA+E I +L +A+L SGQ IL+DG TGE FDRPVTVGY Sbjct: 1189 LKLAGNLSKGVPLATPVFDGAEEGQIKELLELAELPRSGQQILFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|197335552|ref|YP_002157204.1| DNA-directed RNA polymerase, beta subunit [Vibrio fischeri MJ11] gi|226699458|sp|B5FC88|RPOB_VIBFM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|197317042|gb|ACH66489.1| DNA-directed RNA polymerase, beta subunit [Vibrio fischeri MJ11] Length = 1342 Score = 1632 bits (4227), Expect = 0.0, Method: Composition-based stats. Identities = 709/1367 (51%), Positives = 966/1367 (70%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFTKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + LE+VSY P+FDV +C R +TY+ PL++ LRL+V+D D ++ Sbjct: 57 FPIQSYNGNSKLEYVSYNLREPEFDVKECQIRGVTYSAPLRVKLRLVVYDKDAPAN--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L AL +EEIL F+ K+V+ + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNKTTEEILDLFFDKVVFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E+G+++T+ ++ L + + + + D Sbjct: 235 QTLMMELLPERL-RGETATFDIE--ANGKVYVEAGRRITARHIRQLTKDDITHIEVPVDY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G + D VN +TGEI I A + L + + + I +L+ + +++ AYI +TL Sbjct: 292 IVGKVASHDYVNEDTGEIIIAANQEFSLEDLANLSQAGYKKIEVLFTNDLDHGAYISDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RADSTVDRLSALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + + DII +++ L+D+RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DNDEGAGVLDETDIIEVMRKLIDIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FA+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSAFAQCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG+VT+ V YLSA+EE IAQAN+ L E+G+F +EL+ R GE L PRE I Sbjct: 592 RRVVDGQVTDQVDYLSAIEEGTFVIAQANAVLTEEGTFADELIIARQKGESGLHPREHIQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVVQSVDASRIVIKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 LPGEPVTRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R QW Sbjct: 952 QLKEAKKDITEEFQILEGGLLARVRTLLVAAGV-------------SEVKLDAMDRKQWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EITLDDEAQQNQLEQLAEQYDELKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E H+G Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHMG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE--KISDYDDDSVLRVAEQW 1200 A G+G KI ++ K ++ R+FL+KV G + I+ DD V + + Sbjct: 1119 LAAKGVGDKINQML---KEQQELHKFRNFLQKVYDLGETRQEVDIAALSDDEVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TP+FDGA E +I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPIFDGAPEASIKELLKLVDLPESGQLKLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|260774679|ref|ZP_05883584.1| DNA-directed RNA polymerase beta subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260609398|gb|EEX35547.1| DNA-directed RNA polymerase beta subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 1342 Score = 1632 bits (4227), Expect = 0.0, Method: Composition-based stats. Identities = 702/1367 (51%), Positives = 973/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTTEEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E+G+++T+ ++ L++ GV+ + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIE--ANGKTYVETGRRVTARHIRQLEKDGVEHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L + + + + +L+ + +++ ++ +TL Sbjct: 292 IVGKVSSKDYINEATGEIIVAANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIER 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + + DI+ ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAQEQGTLDETDIVEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA++E IAQAN+ L E G+F EEL+ R GE L PRE +D Sbjct: 592 RRVVDGVVTDEVDYLSAIQEGQYVIAQANTVLSEQGTFAEELITARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +A Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEDELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLLDGG-------------YTEAKLDAIDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ Q +E L QY+ ++ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDAQQTQLEQLAEQYDELRADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G ++ DD V + + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFRDFLQKVYDLGDTRQKVDVASLSDDEVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E++I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGASEQSIKELLKLGDLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|172087773|ref|YP_205797.2| RNA polymerase, beta subunit [Vibrio fischeri ES114] gi|171902360|gb|AAW86909.2| RNA polymerase, beta subunit [Vibrio fischeri ES114] Length = 1342 Score = 1632 bits (4227), Expect = 0.0, Method: Composition-based stats. Identities = 709/1367 (51%), Positives = 966/1367 (70%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFTKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + LE+VSY P+FDV +C R +TY+ PL++ LRL+V+D D ++ Sbjct: 57 FPIQSYNGNSKLEYVSYNLREPEFDVKECQIRGVTYSAPLRVKLRLVVYDKDAPAN--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L AL +EEIL F+ K+V+ + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNKTTEEILDLFFDKVVFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E+G+++T+ ++ L + + + + D Sbjct: 235 QTLMMELIPERL-RGETATFDIE--ANGKVYVEAGRRITARHIRQLTKDDITHIEVPVDY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G + D VN +TGEI I A + L + + + I +L+ + +++ AYI +TL Sbjct: 292 IVGKVASHDYVNEDTGEIIIAANQEFSLEDLANLSQAGYKKIEVLFTNDLDHGAYISDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RADSTVDRLSALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + + DII +++ L+D+RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DNDEGAGVLDETDIIEVMRKLIDIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FA+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSAFAQCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG+VT+ V YLSA+EE IAQAN+ L E+G+F +EL+ R GE L PRE I Sbjct: 592 RRVVDGQVTDQVDYLSAIEEGTFVIAQANAVLTEEGTFADELIIARQKGESGLHPREHIQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVVQSVDASRIVIKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 LPGEPVTRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R QW Sbjct: 952 QLKEAKKDITEEFQILEGGLLARVRTLLVAAGV-------------SEVKLDAMDRKQWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EITLDDEAQQNQLEQLAEQYDELKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E H+G Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHMG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE--KISDYDDDSVLRVAEQW 1200 A G+G KI ++ K ++ R+FL+KV G + I+ DD V + + Sbjct: 1119 LAAKGVGDKINQML---KEQQELHKFRNFLQKVYDLGETRQEVDIAALSDDEVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TP+FDGA E +I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPIFDGAPEASIKELLKLVDLPESGQLKLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|182676587|sp|A5F3P5|RPOB_VIBC3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1341 Score = 1632 bits (4227), Expect = 0.0, Method: Composition-based stats. Identities = 714/1366 (52%), Positives = 977/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L LG S EIL F+ K+ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRVLGKTSAEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 235 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF +++YDLSTVGR+K N + Sbjct: 352 RVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L PRE +D Sbjct: 592 RRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + +S R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLSSIERKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +++E++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G IS+ D+ V +A Sbjct: 1119 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|262197199|ref|YP_003268408.1| DNA-directed RNA polymerase subunit beta [Haliangium ochraceum DSM 14365] gi|262080546|gb|ACY16515.1| DNA-directed RNA polymerase, beta subunit [Haliangium ochraceum DSM 14365] Length = 1403 Score = 1632 bits (4227), Expect = 0.0, Method: Composition-based stats. Identities = 727/1364 (53%), Positives = 984/1364 (72%), Gaps = 12/1364 (0%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 RVRK F K ++IDIP+LI++QK SYD FL ++I +ER + GLQ FKSVFPI FS Sbjct: 10 RVRKSFAKLKKVIDIPNLIDIQKRSYDKFLQIDIPAEEREDVGLQGVFKSVFPIKDFSET 69 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 + LEFVSY + PK+DVD+C R +T+A P+K+ +RL+V+DV+E TG +SI+D+KEQ +Y Sbjct: 70 SSLEFVSYNLERPKYDVDECRARGMTFAAPVKVVIRLVVWDVNEETGVQSIRDVKEQEVY 129 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 G++PLMT GTF+I G +R++VSQLHRSPG+ FDHDKG+ SGKLLY+ R+IP +G W Sbjct: 130 FGEIPLMTDSGTFIINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARVIPYRGSW 189 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 +D EFD KDI++VRIDRRRK+ T L ALG +E++L+ FY V G Sbjct: 190 LDFEFDHKDILYVRIDRRRKLYATVLLRALGYSTEDLLNYFYDTEVIHIEGPQKFSRTIN 249 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 DL++G + + + D+ E ++ +K T ++ L++ ++ L I + L G A D Sbjct: 250 YDLLLGQRATRDIRHPDSREILVRKNRKFTRAAIRKLRDSDIEKLTIDLEELVGKVSARD 309 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 I++ TGE+ ++ + + E+ LEE+ + +L++D++N Y+R TL+ DK + + Sbjct: 310 IIDESTGEVLLQCNEELSEEKLEELRTRGVERFDVLFIDNLNVGPYLRTTLLADKLQGPE 369 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+++IYR +RPGD T A+++F LFF+ ++YDLS VGR+K+N + LD D + Sbjct: 370 EAIMEIYRRLRPGDPPTIDTAQNLFQNLFFNPERYDLSQVGRLKLNYKFRLDESLDNPVL 429 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 + DI+ ++ L++LRNG+G IDDID+LGNRRVR+VGE+++NQYR+GL+RMER+IKER+S Sbjct: 430 TRRDILETVRYLIELRNGRGIIDDIDHLGNRRVRAVGELMENQYRIGLVRMERAIKERMS 489 Query: 492 S-VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 +I+++MP DLINAKPV + V E+F SSQLSQ + N LS +TH RRLSALG GG+ Sbjct: 490 MSQEIETLMPHDLINAKPVSAVVKEYFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLT 549 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVHPTHYGRICP ET EG NIGL++SL+++ARVN YGFIETPYR+V DGKV Sbjct: 550 RERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTYARVNQYGFIETPYRRVNDGKV 609 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 T +V + SA++EE + IAQAN++ D G+F+E+ V CR AG+ +V E + +D SP Q Sbjct: 610 TEEVQFYSALQEEGQVIAQANAAHDPSGAFSEDFVSCRRAGDVSMVRPEDVTLMDVSPNQ 669 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 +VS+AASLIPFLE+DD+NR LMG NMQRQAVPL++ AP VGTG+E++VA+ SG +VAK Sbjct: 670 LVSVAASLIPFLEHDDANRALMGSNMQRQAVPLVRTAAPLVGTGIENIVARDSGVTVVAK 729 Query: 731 RAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVR 789 R G+VE VD RIVI+ D + DIY L+KFQRSNQNTC NQ+P+V+ GD VR Sbjct: 730 RDGVVESVDGARIVIKPFETDGEDSLGAKPDIYNLVKFQRSNQNTCSNQKPIVRRGDTVR 789 Query: 790 RNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEV 849 D+IADGP+T+ G+LALG+N +VAFMPW GYNFEDS+L++ER+V D FTS+HIEEFE Sbjct: 790 VGDVIADGPATECGELALGQNTVVAFMPWGGYNFEDSILVNERLVKNDTFTSVHIEEFEC 849 Query: 850 MARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPE 909 +ARDTKLG EEITRDIPNV EE LK++D+ GI+ +GAEV GDILVGKITPKGE+ ++PE Sbjct: 850 VARDTKLGKEEITRDIPNVGEEALKDLDDSGIVRIGAEVKAGDILVGKITPKGETQLSPE 909 Query: 910 EKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLAR 969 EKLLRAIFGEKA DVRDTSLRVP GVSG V++ R+F R G +K++R+ +E + E L Sbjct: 910 EKLLRAIFGEKAGDVRDTSLRVPPGVSGVVINARVFARKGTEKDDRAKDIEDAEKEKLLL 969 Query: 970 DKDDEQVILDRNIYSRLMEILCGQ------NAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 +K E I+ + Y ++ ++L G+ G K + + + + P W + Sbjct: 970 NKQTEIKIISDSYYGKMRKLLVGKTTAARLVDDKGKVLLPKGQKIDAAALDQVPARYWHE 1029 Query: 1024 FAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D KV+ ++E L Q E ++E+++ KI K+ GD++PPGV+++VKV++A+KR Sbjct: 1030 VQAEGDTKVEESLEKLAAQREEDVRLIEEQYDEKIGKLTKGDELPPGVIKLVKVYLAIKR 1089 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 + GDKMAGRHGNKG+VSR+LP EDMP+L DGTPVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1090 KLSVGDKMAGRHGNKGVVSRLLPEEDMPYLSDGTPVDIVLNPLGVPSRMNVGQILETHLG 1149 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA +G++I + + + LR L+KV T E + D++ + R A + + Sbjct: 1150 WAAREIGRQIDMYM---ETSWSADVLREKLKKVFNTAQAHEFLDRLDNEDIGRFATKLRK 1206 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+ +TPVFDGA E+ I + L MA + SGQS L DG +GEPFD PVTVG +YMLKL+H+ Sbjct: 1207 GIHFATPVFDGAAEDEIKAALNMAGMRPSGQSQLCDGKSGEPFDNPVTVGVMYMLKLHHL 1266 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDDV Sbjct: 1267 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDV 1326 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +GRTR+YESIV G E G PESFNVL+KE+Q+L L ++L Sbjct: 1327 LGRTRMYESIVKGEHVLEAGLPESFNVLLKELQSLCLDVELIED 1370 >gi|239813607|ref|YP_002942517.1| DNA-directed RNA polymerase subunit beta [Variovorax paradoxus S110] gi|239800184|gb|ACS17251.1| DNA-directed RNA polymerase, beta subunit [Variovorax paradoxus S110] Length = 1374 Score = 1632 bits (4227), Expect = 0.0, Method: Composition-based stats. Identities = 703/1379 (50%), Positives = 964/1379 (69%), Gaps = 18/1379 (1%) Query: 1 MAKG--VVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAA 58 MA+ + R+RK FG +++IP L+++QK +Y FL I P +R EGLQAA Sbjct: 1 MAQSSAYSYTERKRIRKSFGNRDSVVEIPYLLQMQKDAYTAFLQAGIPPKQRTVEGLQAA 60 Query: 59 FKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 F + FPI + +G ++F+ Y P FDV +C R LT+A ++ ++LI++D + T Sbjct: 61 FDAAFPIVSHNGFVEMKFLEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTS 120 Query: 119 -AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 +K +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGK Sbjct: 121 QSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGK 180 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIV 237 LL++ R+IP +G W+D EFD KD+++ R+DRRRK+PVT L A+G++ E IL+ F+ Sbjct: 181 LLFSARVIPYRGSWLDFEFDPKDMLYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDN 240 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 + L G + D +G+ V+ K++T+ + L++ G + Sbjct: 241 FRLMDSGAQMEFVPERL-RGEVARFDITD-KSGKVVVAKDKRVTARHTRELEQSGTTHIS 298 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 + D L G +A +IV+ ++GEI +A D + E L+++ + ++DI ++Y + ++ AY Sbjct: 299 VPEDFLVGRVIARNIVDADSGEILAKANDELTEALLKKLRTAGVQDIQVIYTNELDQGAY 358 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 I TL D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N Sbjct: 359 ISQTLRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFN 418 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 ++ D + EDI+A++KILVDLRNG G +DDID+LGNRRVR VGE+ +NQYR Sbjct: 419 AKVGRDESTGPMVLTNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRT 478 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL R+E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N LS ITH Sbjct: 479 GLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITH 538 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGF Sbjct: 539 KRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGF 598 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 IETPYR+V D KVTN++ YLSA+EE IAQAN+ LD++G T +LV R AGE ILV Sbjct: 599 IETPYRRVVDSKVTNEIDYLSAIEEGKYVIAQANAVLDKEGKLTGDLVSAREAGESILVG 658 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 E+I ++D SP Q+VS+AASL+PFLE+DD+NR LMG NMQRQAVP+L+ E P VGTG+E Sbjct: 659 AERIQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPMVGTGIER 718 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 V A SG + A R GIV+ VDA RIV+R + + GVDIY L+K+QRSNQNT ++ Sbjct: 719 VSAVDSGTVVTATRGGIVDYVDATRIVVRVNDAEAAAGEVGVDIYNLIKYQRSNQNTNIH 778 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 QRP+VK GD++ + D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V+ED Sbjct: 779 QRPIVKRGDKIAKGDVVADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAED 838 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 +TSIHIEE VMARDTKLG EEITRDIPN++E+ L +DE GII VGAEV PGD LVGK Sbjct: 839 RYTSIHIEELVVMARDTKLGAEEITRDIPNLAEQQLNRLDESGIIYVGAEVQPGDTLVGK 898 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G GTV+DV++F R GI +++R+ Sbjct: 899 VTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGITRDKRAQ 958 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 + ++++ D +D+ I++ + + R+ ++L G+ A GP K T L +S Sbjct: 959 QIIDDELKRFRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPNKLAKGTKLDKAYLSSVE 1018 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 + W+ D++V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV+ Sbjct: 1019 KFHWFDIRPADDEVATQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVY 1078 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR +Q GDKMAGRHGNKG+VS+I+P EDMP + DGTP DI LNPLGVPSRMNVGQ+ Sbjct: 1079 LAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPCDICLNPLGVPSRMNVGQVL 1138 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 E HLGWA G+G +I L+ + ++ LR F+E++ E +S D VL +A Sbjct: 1139 EVHLGWAGKGIGHRIGDLL---QQEAKVAELRKFMEQLYNGSGRPEDLSQLSDSDVLAMA 1195 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDR 1247 +SG +TPVFDGA EE I ML++A D Q+ LYDG TG+ F+R Sbjct: 1196 ANLQSGATFATPVFDGASEEEIRGMLKLAYPDDIAKLKGLTETRTQAYLYDGRTGDQFER 1255 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 PVTVGY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1256 PVTVGYMHFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1315 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AYVLQEMLT+KSDDV GRT+VYESIV G + E G PESFNVLVKE+++LGL I+LE S Sbjct: 1316 AYVLQEMLTVKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGLDIELERS 1374 >gi|149189253|ref|ZP_01867540.1| DNA-directed RNA polymerase subunit beta [Vibrio shilonii AK1] gi|148837007|gb|EDL53957.1| DNA-directed RNA polymerase subunit beta [Vibrio shilonii AK1] Length = 1341 Score = 1632 bits (4226), Expect = 0.0, Method: Composition-based stats. Identities = 708/1366 (51%), Positives = 978/1366 (71%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDRDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG SEEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSEEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G S + G+ +E+G+++T+ ++ L++ GV+F+ + + Sbjct: 235 QTLLMELVPERL-RGETASFDIE--ANGKTYVETGRRVTARHIRQLEKDGVEFIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L + + ++ + +L+ + +++ ++ +TL Sbjct: 292 IVGKVASKDYINEATGEIIVGANQEISLEALANLSQAGVKKLEVLFTNDLDHGPFMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RVDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + ++DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDGLEQGTLDEQDIIEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA+EE IAQAN++L E+G+F +EL+ R GE L PR+ ++ Sbjct: 592 RRVVDGVVTDEVDYLSAIEEGQFVIAQANAALTEEGTFADELITARQKGESGLHPRDHVN 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGTVQSVDASRIVIKVNEDELIPGEAGIDIYNLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 LPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLLQGG-------------YSDAKLDTIDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ +Q +E L QY+ ++ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDALQSQLEQLAEQYDELRADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE--KISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G + I+ DD V + + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFREFLQKVYDLGGTRQNVDIASLSDDEVRTLVKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E++I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGASEKSIKELLKLGDLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|78099458|gb|ABB20865.1| RNA polymerase subunit B [Acinetobacter radioresistens] Length = 1362 Score = 1632 bits (4225), Expect = 0.0, Method: Composition-based stats. Identities = 715/1374 (52%), Positives = 976/1374 (71%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P++++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMEAPYLLSIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T + ALG ++E+IL FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVMRALGYNNEQILDLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDIADND-GKVIVEQGKRINARHVRQMEASGLTKLPVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AED ++ ++G++ A ++ + + +I ++ ILY + ++ +++ +TL Sbjct: 295 LYERITAED-ISLKSGDVIA-ANTLLSHEIMVKIAEGGVKQFNILYTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTSGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKTNE 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S+LD+DG TEELV R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSALDKDGYLTEELVSVRYQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + E+I +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMAPERITHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++AKR G +E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIAKRGGTIEFVDASRVVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L Q + G K+ LS +L+S Sbjct: 953 RALAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKDQVSNGG-GNTKRGEKLSEELLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELIDLLEIQPSDEAIAERLTQIQVFLKEKSTEIDEKFAEKKRKLSTGDELTHGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS+ILP EDMP +G PVD+VLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSQILPVEDMPHDANGVPVDVVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ K I LR FL+K+ G E++ DD + Sbjct: 1132 QILETHLGLAAKGLGEQIDKML---KQQRAIVELRDFLDKIYNKVGGEQEQLDTLTDDEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L++A GVP++TPVFDGA+E I +L +A+L SGQ IL+DG TGE FDRPVTVGY Sbjct: 1189 LKLAGNLSKGVPLATPVFDGAEEGQIKELLELAELPRSGQQILFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|56459456|ref|YP_154737.1| DNA-directed RNA polymerase beta subunit [Idiomarina loihiensis L2TR] gi|81362632|sp|Q5QWA5|RPOB_IDILO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|56178466|gb|AAV81188.1| DNA-directed RNA polymerase beta subunit [Idiomarina loihiensis L2TR] Length = 1342 Score = 1632 bits (4225), Expect = 0.0, Method: Composition-based stats. Identities = 708/1366 (51%), Positives = 983/1366 (71%), Gaps = 26/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q S+ F+ ++ N GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKDFGKRPQVLEVPYLLSMQLDSFKKFIEVD----PEANNGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L++VSY P FDV++C R +TY+ PL++ LRL++FD + G ++ Sbjct: 57 FPIASYSGTAELQYVSYHMGEPAFDVEECQIRGITYSAPLRVKLRLVLFDKEAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG++ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L AL +EEIL F+ + Sbjct: 175 RVIPYRGSWLDFEFDPKDNVFVRIDRRRKLPASIILRALEYSTEEILDMFFDTTYFEILK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + GE ++E G+++T+ ++ L++ +K + + ++ Sbjct: 235 TKVKMQLVPERL-RGETAKFDIKGAE-GEVLVEKGRRITARHIRQLEQLDIKEMEVPAEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A+D N +TGE+ A DV+ + + E+ + I+ I L+V+ +++ Y+ TL Sbjct: 293 MVGKVLAKDYANKKTGEVVGHANDVLTLELIAELSEAGIKKIETLFVNDLDHGPYMSETL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +R +AL++IYR+MRPG+ T AE++F+ LFF ++YDLSTVGR+K N RL Sbjct: 353 RVDSSNNRLEALVEIYRMMRPGEPPTREAAETLFDNLFFSEERYDLSTVGRMKFNRRLGR 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +EDI+ ++K L+++RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 EDLSGDNTLSREDIVEVMKKLIEIRNGLDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+ MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVKERLSLGDLDNTMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL++F+R N YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSTFSRTNEYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R++ +G VT+DV YLSA+EE N IAQAN L++ G TE+LV CR E L+ +E++ Sbjct: 593 RRIENGSVTDDVDYLSAIEEGNYVIAQANVGLNDKGELTEDLVPCRHKNEFTLMSKEQVQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P+Q+VSIAAS+IPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E +A Sbjct: 653 YMDVAPQQIVSIAASMIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERTIAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+V+ VDA RIV++ E ++ P +G+DIY L K+ RSNQNTC+NQ+P V Sbjct: 713 SGVTVVAKRGGVVDYVDASRIVVKVNEEEMVPGEAGIDIYNLTKYTRSNQNTCINQKPTV 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+LISER+ ED T+I Sbjct: 773 NPGEPVTRGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILISERVAQEDRMTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE G++ VGAEVN GDILVGK+TPKG Sbjct: 833 HIQELNCVARDTKLGAEEITSDIPNVGESALGKLDESGVVYVGAEVNGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GV+GTV+DV++F R G++K++R++++E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVNGTVIDVQVFTRDGVEKDKRAVAIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ + +D +E IL+ IY+R +L ++ RS W Sbjct: 953 QLAKVKKDLTEEFKILEEGIYNRARNLLLSNG-------------FDEAKLASVDRSSWL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +E Q +E + QY+ + + +F+ K KI GDD+ PGVL++VKV++A++R Sbjct: 1000 TQDLGNEDAQAQLEQIAEQYQQIRDDFDTKFETKRRKITQGDDLAPGVLKIVKVYLAVRR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDK+AGRHGNKG++S I+P EDMP +G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1060 SIQPGDKLAGRHGNKGVISTIIPVEDMPHDDEGNPVDIVLNPLGVPSRMNIGQILETHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI+ ++ K IS LR FL++V G I+++ DD V+R+A Sbjct: 1120 MAARGIGSKIEKML---KQQRAISELRDFLQQVYDLGESRQKVDITEFTDDEVMRLAGNL 1176 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K+G+P +TPVFDGA EE I ++L++ADL ESGQ L+DG TG+ F+R VTVGY+YMLKLN Sbjct: 1177 KAGLPTATPVFDGAVEEEIKALLKLADLPESGQIRLFDGRTGDKFERDVTVGYMYMLKLN 1236 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV N E G PESFNVL+KE+++LG++I+LE + Sbjct: 1297 DVNGRTKMYKNIVDNNLQMEAGMPESFNVLLKEIRSLGINIELEQN 1342 >gi|224713634|gb|ACN62087.1| DNA-directed RNA polymerase beta subunit [Acinetobacter baumannii] Length = 1362 Score = 1632 bits (4225), Expect = 0.0, Method: Composition-based stats. Identities = 714/1374 (51%), Positives = 978/1374 (71%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG ++E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D + G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDITDNE-GKVIVEQGKRINARHVRQMEAAGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + GE+ A ++ + + ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAEDITLRD-GEVIA-ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +DR++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADLTRDREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+DV YLSA+EE IAQA+S++D+DG+ TEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G++E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ T EE LLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQSTREENLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L GQ + G K+ LS DL+S Sbjct: 953 RALAIEKAQLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGG-GSTKRGDKLSEDLLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L +A ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALAGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK +ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKKHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|78099452|gb|ABB20862.1| RNA polymerase subunit B [Acinetobacter junii] Length = 1362 Score = 1632 bits (4225), Expect = 0.0, Method: Composition-based stats. Identities = 713/1374 (51%), Positives = 975/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P +++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPHVMEAPYLLSIQVDSYRTFLQGGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ VRIDRRRK+ T L AL +E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVFVRIDRRRKLLATVILRALNYSNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L D + G ++D D G+ ++E GK++ + ++ ++ + L + + Sbjct: 237 GSYQIDLVP-DRLRGEMAQFDILDND-GKAIVEQGKRINARHVRQMEAANLAKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI ++G++ A V+ + + ++ ++ IL+ + ++ ++I +TL Sbjct: 295 LYERITAEDIT-LKSGDVI-PANTVLSHEIMVKLAEGGVKQFNILFTNDIDRGSFIADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHDDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S++D+DG+ TEE+V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSAVDKDGNLTEEMVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + E++ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMSPERVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G++E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIAGRGGVIEYVDASRIVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKGQESNGG-GSTKRGEKLSEDMLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPTDEAIAERLTQIQVFLKEKSHEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ K I+ LRSFL+K+ G E++ D+ + Sbjct: 1132 QILETHLGMAAKGLGEQIDKML---KQQRTIAELRSFLDKIYNKVGGEQEQLDTLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 ++A ++GVP++TPVFDGA+E I +L +A+L SGQ IL+DG TGE FDRPVTVGY Sbjct: 1189 FKLAGNLRAGVPLATPVFDGAEESQIKELLELAELPRSGQQILFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|262373982|ref|ZP_06067259.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter junii SH205] gi|78099446|gb|ABB20859.1| RNA polymerase subunit B [Acinetobacter junii] gi|262310993|gb|EEY92080.1| DNA-directed RNA polymerase, beta subunit [Acinetobacter junii SH205] Length = 1362 Score = 1632 bits (4225), Expect = 0.0, Method: Composition-based stats. Identities = 713/1374 (51%), Positives = 975/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P +++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPHVMEAPYLLSIQVDSYRTFLQGGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ VRIDRRRK+ T L AL +E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVFVRIDRRRKLLATVILRALNYSNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L D + G ++D D G+ ++E GK++ + ++ ++ + L + + Sbjct: 237 GSYQIDLVP-DRLRGEMAQFDILDND-GKAIVEQGKRINARHVRQMEAANLAKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + G++ A V+ + + ++ ++ IL+ + ++ ++I +TL Sbjct: 295 LYERITAEDIT-LKNGDVI-PANTVLSHEIMVKLAEGGVKQFNILFTNDIDRGSFIADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHDDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S++D+DG+ TEE+V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSAVDKDGNLTEEMVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + E++ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMSPERVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G++E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIAGRGGVIEYVDASRIVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKGQESNGG-GSTKRGEKLSEDMLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPTDEAIAERLTQIQVFLKEKSHEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ K I+ LRSFL+K+ G E++ D+ + Sbjct: 1132 QILETHLGMAAKGLGEQIDKML---KQQRTIAELRSFLDKIYNKVGGEQEQLDTLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L+++ ++GVP++TPVFDGA+E I +L +A+L SGQ IL+DG TGE FDRPVTVGY Sbjct: 1189 LKLSGNLRAGVPLATPVFDGAEESQIKELLELAELPRSGQQILFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|78099426|gb|ABB20849.1| RNA polymerase subunit B [Acinetobacter bouvetii] Length = 1362 Score = 1631 bits (4224), Expect = 0.0, Method: Composition-based stats. Identities = 708/1374 (51%), Positives = 967/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPKVMDVPYLLAIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLILKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ VRIDRRRK+ T L ALG ++ +IL FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVFVRIDRRRKLLATVVLRALGYNNSQILDLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G++ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDIADKD-GKVIVEQGKRINARHVRQMEAAGLEKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L +AED+ G I A V+ + + ++ ++ IL+ + ++ ++I ++L Sbjct: 295 LYERIIAEDV--ALRGGDVIAANTVLSHEIMVKLAEGGVKQFNILFTNDIDRGSFIADSL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTSSREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDI +++ L+++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDITDVLQTLIEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKCNN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+DV YLSA+EE IAQA+S +D+DG+ EE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDDVEYLSAIEEVGTVIAQADSGVDKDGNLQEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA SG ++A R G +E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVAHDSGVCVIANRGGRIEFVDASRVVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LVK+GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVKLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRV S V GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVSSSVKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS +++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKGQESNGGGTT-KRGDKLSEEVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELADLLEIQPTDEGIAERLTQIQVFLKEKSTEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVD+VLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI ++ + + + LR FL+K+ G E + DD + Sbjct: 1132 QILETHLGMAAKGLGDKIDKMMKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDDEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ ++GVP++TPVFDGA+E I +L + + +GQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LALSGNLRAGVPLATPVFDGAEESQIKELLELGGISRTGQTVLYDGRTGERFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|153835070|ref|ZP_01987737.1| DNA-directed RNA polymerase, beta subunit [Vibrio harveyi HY01] gi|156972585|ref|YP_001443492.1| DNA-directed RNA polymerase subunit beta [Vibrio harveyi ATCC BAA-1116] gi|166229309|sp|A7MXF1|RPOB_VIBHB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|148868466|gb|EDL67572.1| DNA-directed RNA polymerase, beta subunit [Vibrio harveyi HY01] gi|156524179|gb|ABU69265.1| hypothetical protein VIBHAR_00225 [Vibrio harveyi ATCC BAA-1116] Length = 1342 Score = 1631 bits (4224), Expect = 0.0, Method: Composition-based stats. Identities = 707/1367 (51%), Positives = 971/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG SEEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSEEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E G+++T+ ++ L++ GV + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIE--ANGKTYVEQGRRVTARHIRQLEKDGVDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L + + + + L+ + +++ ++ TL Sbjct: 292 IVGKVASKDYINEATGEIIVNANQEISLEALANLSQAGHKSLETLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + + DI+ ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAQEQGTLDELDIVEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA+EE IAQAN++L E+G F +EL+ R GE L PRE Sbjct: 592 RRVVDGVVTDEVDYLSAIEEGQFVIAQANAALTEEGGFADELITARQKGESGLHPREHAQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVSRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVRAVLIDGG-------------YSEAKLDTTDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G I+ DD V + + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFREFLQKVYDLGETRQKVDIASLSDDEVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E +I ++L++ADL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGAPEASIKALLKLADLPESGQLKLFDGRTGDQFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|319639542|ref|ZP_07994289.1| DNA-directed RNA polymerase subunit beta [Neisseria mucosa C102] gi|317399113|gb|EFV79787.1| DNA-directed RNA polymerase subunit beta [Neisseria mucosa C102] Length = 1409 Score = 1631 bits (4224), Expect = 0.0, Method: Composition-based stats. Identities = 693/1398 (49%), Positives = 959/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 18 MSYSFTEKKRIRKSFAKRENVLDVPFLLATQIDSYAKFLQLENAFDQRTDDGLQAAFNSI 77 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 78 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 135 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 136 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 195 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 196 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 255 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A+ L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 256 NGVQTDLVASRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 313 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L ++ + +++I LY++ ++ YI +TL Sbjct: 314 LLGKALATDLIDPETGEVLASANDEITEELLAKLDINGVKEITTLYINELDQGGYISSTL 373 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D++ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 374 RTDETADQQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 433 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+ I LV+LRNG G +DDID+LG Sbjct: 434 QKLSEAQQNSWYGRLLNETLAGAAEKGGYVLSVEDIVVSIATLVELRNGHGEVDDIDHLG 493 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 494 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 553 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 554 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 613 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V +GKVT ++ YLSA+EE IAQAN+ LD+DG+ Sbjct: 614 GLINSLSVYARTNDYGFLETPYRRVINGKVTEEIDYLSAIEEGRYVIAQANADLDKDGNL 673 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 674 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 733 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 734 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 793 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D+IADG STDLG+LALG+NM +AFMPW+G Sbjct: 794 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLIADGASTDLGELALGQNMTIAFMPWNG 853 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 854 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 913 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 914 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 973 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ +D D+ I D + + R+ ++ GQ A GP Sbjct: 974 DVQVFTREGIQRDKRAQSIIDSELKRYRQDLSDQLRIFDNDAFDRIERMIVGQKANGGPM 1033 Query: 1001 GFKKSTVLSSDLISEY-PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ + W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1034 KLAKGSEITTEYLASLSSKHDWFDIRLADEDLAKQLELIKLSLQQKREEADELYEIKKKK 1093 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1094 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1153 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ K S LR FL K+ + Sbjct: 1154 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRML---KEQRKASELREFLNKLYNSS 1210 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1211 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1270 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GEPFDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1271 NDSKTQITLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1330 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1331 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1390 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1391 NVLVKEIRSLGLDIDLER 1408 >gi|330430114|gb|AEC21448.1| DNA-directed RNA polymerase subunit beta [Pusillimonas sp. T7-7] Length = 1370 Score = 1631 bits (4224), Expect = 0.0, Method: Composition-based stats. Identities = 699/1375 (50%), Positives = 954/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++ D+P L+ Q S+ FL + P +R +EGLQAAF S+ Sbjct: 1 MPYSYTEKKRIRKSFAKREDVQDVPYLLATQLQSFKTFLQADTTPSKRKDEGLQAAFTSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + + A LEFVSY P FDV +C R LTYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNQMARLEFVSYVLGEPVFDVKECQLRGLTYASPLRAKVRLVLMDR--EVSKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT +G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTNNGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KDI+ R+DRRRK+PV+ L A+GM E IL+ F + G Sbjct: 179 RVIPYRGSWLDFEFDPKDILFFRVDRRRKMPVSILLKAIGMMPEAILAYFSDFDNFEILG 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + G + D +G ++E K++ + L+ L V+ + + D Sbjct: 239 EGGMLEFVPE-RWKGEVAHFDISD-RSGTVIVEKDKRINAKHLRDLANAKVERISVPEDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A+ +VN ETGE+ A D I+E L EI + IR+I LY++ ++ YI TL Sbjct: 297 VLGRILAKGLVNPETGEVIANANDEINETILAEIRVANIREIQTLYINDLDRGGYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D+ A + IYR+MRPG+ T E++F LF+ D YDLS VGR+K+N RL Sbjct: 357 RTDETADQMAARVAIYRMMRPGEPPTEDAVEALFQRLFYSEDAYDLSRVGRMKVNSRLGR 416 Query: 423 DTP-DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + +DI+ IK+LV+LRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R Sbjct: 417 GDDITGPMTLTDDDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+ + +++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 477 VERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRV 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR+N YGF+ETP Sbjct: 537 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETP 596 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRK+ DGKV+ + YLSA+EE N IAQAN+ LDE G F ++LV CR AGE +L + Sbjct: 597 YRKIIDGKVSEQIDYLSAIEESNYVIAQANAELDETGKFVDDLVACRQAGETMLTAPSNV 656 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 657 HYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGVERTVAV 716 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R GIV+ VDA R+VIR + + GVDIY L K+ RSNQNT +NQRP+ Sbjct: 717 DSGTTVQAIRGGIVDHVDAERVVIRVNDDENVAGEVGVDIYNLTKYTRSNQNTNINQRPI 776 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TS Sbjct: 777 VKRGDQVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKIVADDRYTS 836 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE V+ARDTKLG EEITRDI N++E L +D+ GI+ +GAEV D+LVGK+TPK Sbjct: 837 IHIEELTVVARDTKLGAEEITRDISNLAETQLNRLDDSGIVYIGAEVRADDVLVGKVTPK 896 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R GI++++R+ S+ Sbjct: 897 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMIGTVIDVQVFTREGIERDKRAQSIID 956 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +++ +D +D+ I++ + + R+ + L G+ GP+ K L +++ R QW Sbjct: 957 DELRRYRQDLNDQLRIVEDDTFDRIGKFLVGKTVNGGPRKLAKGATLDKAYLTDLDRWQW 1016 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ +E K E + + F+ K +K+ GD++PPGVL+++KV++A+K Sbjct: 1017 FDIRLSDEEHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVK 1076 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VSRI P EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1077 RRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHL 1136 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G +I ++ D K + +R++LEKV + + I + DD ++ +A K Sbjct: 1137 GWAAKGVGYRIADMLQDEKNV-QVKNVRAYLEKVYNSAGASAHIDELTDDEIIEMARNLK 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDRPVTV 1251 +GVP++TPVFDGA EE I+ ML +A D Q+ L DG TGE F+RPVT+ Sbjct: 1196 NGVPLATPVFDGATEEEISKMLELAYPDDIAQRLNLTETRAQAWLIDGRTGEQFERPVTI 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y L Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDD+ GRT+VYE+IV G+ + G PESFNVLVKE+++L L +DLE Sbjct: 1316 QEMLTVKSDDISGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLSLDMDLERK 1370 >gi|313667426|ref|YP_004047710.1| DNA-directed RNA polymerase beta chain [Neisseria lactamica ST-640] gi|313004888|emb|CBN86314.1| DNA-directed RNA polymerase beta chain [Neisseria lactamica 020-06] Length = 1392 Score = 1631 bits (4224), Expect = 0.0, Method: Composition-based stats. Identities = 695/1398 (49%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG +E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYGNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDIANAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVVDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+V+R + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLSDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P + W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSKHDWFDIRLADEDLAKQLELIKLSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GEPFDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|262280712|ref|ZP_06058495.1| RNA polymerase subunit B [Acinetobacter calcoaceticus RUH2202] gi|78099428|gb|ABB20850.1| RNA polymerase subunit B [Acinetobacter calcoaceticus] gi|262257612|gb|EEY76347.1| RNA polymerase subunit B [Acinetobacter calcoaceticus RUH2202] Length = 1362 Score = 1631 bits (4223), Expect = 0.0, Method: Composition-based stats. Identities = 707/1374 (51%), Positives = 974/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P++++ P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMEAPYLLSIQVDSYRTFLQGGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG ++E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L D + G + D D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVP-DRLRGEMAQFDIADND-GKIIVEQGKRINARHVRQMEASGLAKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI G++ A ++ + + ++ ++ IL+ + ++ +++ ++L Sbjct: 295 LYERITAEDIT-LRNGDVIA-ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADSL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTSGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+ V YLSA+EE IAQA+S++D+DG+ TE+ V R G+ + Sbjct: 593 FGFLETPYRKVVDGRVTDAVEYLSAIEEVGTVIAQADSAIDKDGNLTEDFVSVRHQGDFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G +E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGAIEYVDASRIVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNIIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L GQ + G K+ L ++S Sbjct: 953 RAMAIEKAQLDAYRKDLKEEYKIFEEAARERVIRLLNGQESNGG-GSTKRGDKLVDGMLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPTDEAIAERLSQIQVFLKEKSAEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E + D V Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDAEV 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALSGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|260770580|ref|ZP_05879512.1| DNA-directed RNA polymerase beta subunit [Vibrio furnissii CIP 102972] gi|260614410|gb|EEX39597.1| DNA-directed RNA polymerase beta subunit [Vibrio furnissii CIP 102972] gi|315178364|gb|ADT85278.1| DNA-directed RNA polymerase subunit beta [Vibrio furnissii NCTC 11218] Length = 1342 Score = 1631 bits (4223), Expect = 0.0, Method: Composition-based stats. Identities = 712/1367 (52%), Positives = 977/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG +EEIL F+ KI + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTTEEILDIFFEKINFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G S + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 235 QTLMMELVPERL-RGETASFDIE--ADGKLYVEKGRRVTARHIRQLEKDGVTFIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I +SL + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVSSKDYINEATGEIIVAANQEISLESLANLSQAGYKKLEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RVDSTTDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIER 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 ++ + + DI+ ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 ADAEEQGTLDETDIVEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L PRE ++ Sbjct: 592 RRVVDGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVN 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKAE PFVGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKAEKPFVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGMIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLARVRSLLITGG-------------YSEAKLDAIDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++++++Q +E + QY+ ++ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQTLENDELQTQLEQMAEQYDELRAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE--KISDYDDDSVLRVAEQW 1200 A G+G KI +I K +++ LR FL+KV G + I+ DD V +A+ Sbjct: 1119 LAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGETRQQVDIAALSDDEVRTLAQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 +SG+P++TPVFDGA+E +I ++L++ DL ESGQ L+DG TG+ F+R VTVGY+YMLKLN Sbjct: 1176 RSGLPIATPVFDGANEASIKALLKLGDLPESGQLTLFDGRTGDAFERSVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|332040077|gb|EGI76462.1| DNA-directed RNA polymerase subunit beta [Hylemonella gracilis ATCC 19624] Length = 1370 Score = 1631 bits (4223), Expect = 0.0, Method: Composition-based stats. Identities = 695/1375 (50%), Positives = 970/1375 (70%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FG +++IP L+++QK +Y FL +++ +R EGLQAAF+S Sbjct: 1 MAYTFTERKRIRKSFGSRDSVLEIPYLLQMQKDAYTSFLQADLSSTKRRPEGLQAAFESA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFT-GAKS 121 FPI + +G ++F+ Y P FDV +C R LT+A ++ ++LI++D + T K Sbjct: 61 FPIVSHNGFVEMKFLEYNLAKPAFDVRECQTRGLTFASAVRARVQLIIYDRESSTPQNKV 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 VKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G++ E IL+ F+ + + Sbjct: 181 ARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPETILANFFVNDNFRLQ 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 + L G + D +G+ ++ K++T+ + L++ G + + D Sbjct: 241 DSGAQMEFVSERL-RGEVARFDITD-KSGKVIVAKDKRITARHTRELEQSGTTHISVPED 298 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G VA +IV+ +TGEI +A + + E L+++ + ++++ +Y + ++ AYI T Sbjct: 299 FLIGRVVARNIVDPDTGEIIAKANEELTEALLKKLRSANVQELQCIYTNELDQGAYISQT 358 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N +L Sbjct: 359 LRIDETTDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKLG 418 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 P + EDI+A++KILVDLRNG+G +DDID+LGNRRVR VGE+ +NQYR GL R Sbjct: 419 NSDPAGPMVLTNEDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGLAR 478 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH RR+ Sbjct: 479 IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRV 538 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIETP Sbjct: 539 SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETP 598 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V DGKVT + YLSA+EE IAQAN++LD+DG T+ELV R GE IL ++I Sbjct: 599 YRRVEDGKVTTKIDYLSAIEEGKYVIAQANATLDKDGKLTDELVSAREKGESILCGADRI 658 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SP Q+VS+AASL+PFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A Sbjct: 659 QYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVAAI 718 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA RIVIR + + GVDIY L+K+QRSNQNT ++QRP+ Sbjct: 719 DSGTVVTATRGGVVDSVDATRIVIRVNDNEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPI 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD++ + D+IADG STDLG++A+G+NML+AFMPW+GYNFEDS+LISER+V++D +TS Sbjct: 779 VKKGDKLAKGDVIADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVADDRYTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD+LVGK+TPK Sbjct: 839 IHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVVPGDVLVGKVTPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV G GTV+DV++F R GI +++R+ + Sbjct: 899 GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQIID 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ I++ + + R+ ++L G+ A GP K + + ++ + W Sbjct: 959 DELKRFRLDLNDQLRIVEADAFDRIEKLLNGKTANGGPSKLAKGSKIDKAYLASIEKHHW 1018 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + D++V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV++A+K Sbjct: 1019 FDIRPADDEVASQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK 1078 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I P EDMP++ DGTPVDIVLNPLGVPSRMN+GQ+ E HL Sbjct: 1079 RRLQPGDKMAGRHGNKGVVSKITPVEDMPYMADGTPVDIVLNPLGVPSRMNIGQVLEVHL 1138 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA GLG++I ++ A +I R FLE+V + E+++ DD + +A++ Sbjct: 1139 GWAGKGLGQRIGDMLQREAATTEI---RGFLEQVYNSAGRKEELAKLKDDELRLMAQELT 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMA---------DLDES-GQSILYDGLTGEPFDRPVTV 1251 SGVP ++PVFDGA EE I ML++A L+E+ Q+ LYDG TG+ F+R TV Sbjct: 1196 SGVPFASPVFDGATEEEIRGMLKLAYPDDVAKAKGLNETRTQAQLYDGRTGDAFERTTTV 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYE+IV G E G PESFNVLVKE+++LGL I+LE S Sbjct: 1316 QEMLTVKSDDVQGRTKVYENIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS 1370 >gi|78099440|gb|ABB20856.1| RNA polymerase subunit B [Acinetobacter genomosp. 6] Length = 1362 Score = 1631 bits (4223), Expect = 0.0, Method: Composition-based stats. Identities = 703/1374 (51%), Positives = 969/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P++++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMEAPYLLSIQVDSYRTFLQGGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ VRIDRRRK+ T L AL + +IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVFVRIDRRRKLLATVILRALNYSNAQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L D + G + D D G+ ++E GK++ + ++ ++ + L + + Sbjct: 237 GSYQIDLIP-DRLRGEMAQFDIADND-GKVIVEQGKRINARHVRQMEAANLAKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AED + + GE+ A ++ + + ++ ++ IL+ + ++ ++I +TL Sbjct: 295 LYERITAED-IPLKDGEVIA-ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFIADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T A+++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAADNLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHDDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAEADNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKTNN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+ V YLSA+EE IAQA+S++D++G+ TEE+V R G+ + Sbjct: 593 FGFLETPYRKVVDGRVTDAVEYLSAIEEVGTVIAQADSAIDKEGTLTEEMVSVRHQGDFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + E++ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMSPERVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G +E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGAIEYVDASRIVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNMGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L G+ + G K+ L+ D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKGKESNGGGTT-KRGDKLAEDMLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPTDEAIAERLTQIQVFLKEKSIEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ + ++ LR FL+K+ G E + D+ V Sbjct: 1132 QILETHLGLAAKGLGEQIDKMLQQQRT---VAELRLFLDKIYNKVGGEQEDLDSLTDEEV 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L++A ++GVP++TPVFDGA+E I +L +A+L SGQ L+DG TGE FDRPVTVGY Sbjct: 1189 LKLAGNLRAGVPLATPVFDGAEESQIKELLELAELPRSGQQTLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|315125341|ref|YP_004067344.1| DNA-directed RNA polymerase subunit beta [Pseudoalteromonas sp. SM9913] gi|315013854|gb|ADT67192.1| DNA-directed RNA polymerase subunit beta [Pseudoalteromonas sp. SM9913] Length = 1341 Score = 1630 bits (4222), Expect = 0.0, Method: Composition-based stats. Identities = 702/1364 (51%), Positives = 963/1364 (70%), Gaps = 23/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ Q S+ FL PD + GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLESFKKFL----VPDADGDHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL+V D + ++ Sbjct: 57 FPIKSYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVVMDKEAPG---TV 113 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT GTFVI G +R++VSQLHRSPG+ FD+D+G+ SGK+LY Sbjct: 114 KDIKEQEVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNA 173 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD ++VRIDRRRK+P + L AL SEEIL F+ + Sbjct: 174 RVIPYRGSWLDFEFDAKDNLYVRIDRRRKLPASIILRALEYTSEEILDIFFDTTAFEIAD 233 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L + L G + + + GE ++ESG+++T+ +KS+++KG+ L + + Sbjct: 234 GKVLMELVPSRL-RGETAAFDI-KSEDGEVLVESGRRVTARHIKSIEKKGINQLEVPHEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A++ V+ TGEI A D + + + E+ + I LY++ V++ AY+ NTL Sbjct: 292 IIGRVLAKNYVDESTGEIIATANDELTLEMMAELVKAGHTTIDTLYINEVDSGAYMSNTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +R +AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N R+ Sbjct: 352 NIDSSSNRLEALVEIYRMMRPGEPPTKDAAEALFENLFFSEERYDLSTVGRMKFNSRVGY 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D+ + KEDI+A++K+L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DSDTGPGTLSKEDIVAVMKVLIAIRNGVGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+++AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT++V YLSA+EE IAQANS+L E F +EL+ CR GE + R Sbjct: 592 RKVVDGVVTDEVDYLSAIEEGQFVIAQANSNLTETNEFVDELIPCRHKGESTFMGRMDQQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+QV+S+AA+LIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +AK Sbjct: 652 YMDVSPQQVISVAAALIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGIELTLAKD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG IVAKR G V DA RIV+ E + P +G+DIY L K+ RSNQNTC+NQ+P Sbjct: 712 SGVTIVAKRGGEVMYADASRIVVNVHEEERIPGEAGIDIYNLTKYTRSNQNTCINQKPTC 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+N+ VAFMPW+GYNFEDS+L+SER+V ED T+I Sbjct: 772 MVGEPVTRGDVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVEEDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E + +ARDTKLG EEIT DIPNV E L +DE G++ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELQCIARDTKLGSEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V+GTV+DV++F R G++K++R++ VE Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEDM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D ++E IL+ + R ++L D ++ + Sbjct: 952 QLREAKKDFNEEFRILEAGVLDRARKLLVAAG-------------FDEDNLASLNAEKLL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ +E Q +E L QY+ K+ + +F+NK KI GDD+ PGVL++VKV++A+KR Sbjct: 999 TQSLAEEDKQAELEQLAAQYDELKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ G VDIVLNPLGVPSRMN+GQI ETH+G Sbjct: 1059 RIQPGDKMAGRHGNKGVISTIVPVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G++++ ++ + + ++ ++ G I+ + DD + R+AE K Sbjct: 1119 LAARGIGERLEEMMKEQRELHELRAFIKQAYEI-GESRQVVDIASFSDDEIRRLAENLKG 1177 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E I ML + SGQ LYDG TG+ F+R VTVGY+YMLKLNH+ Sbjct: 1178 GLPIATPAFDGAKESEIKDMLELGGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHL 1237 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1238 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1297 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE + Sbjct: 1298 NGRTKMYKNIVDGNHKMEPGMPESFNVLLKEIRSLGINIELEEN 1341 >gi|109896926|ref|YP_660181.1| DNA-directed RNA polymerase, beta subunit [Pseudoalteromonas atlantica T6c] gi|122972315|sp|Q15YB1|RPOB_PSEA6 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|109699207|gb|ABG39127.1| DNA-directed RNA polymerase subunit beta [Pseudoalteromonas atlantica T6c] Length = 1342 Score = 1630 bits (4222), Expect = 0.0, Method: Composition-based stats. Identities = 713/1365 (52%), Positives = 978/1365 (71%), Gaps = 26/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P++++IP L+ +Q S+ F+ +++ GL+AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIDLDVD----GQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L++VSY P FDV +C R +T++ PL++ LRL++FD + G ++ Sbjct: 57 FPIKSYSGNAELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDREAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P T L AL + +EEIL F+ K G Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPATIMLRALEIPTEEILGMFFEKNQVRIDG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + D + G ++D D G ++E+G+++++ ++L++ G+ L + ++ Sbjct: 235 NRF-MSDIVPDRLRGETAQFDILDSD-GNVLVEAGRRISARHTRALEKAGIVELEVPAEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G A D V+ ETGE+ + A D++ +++ + + LY++ +++ AYI +TL Sbjct: 293 LVGRVFACDYVDQETGELVVAANDLLTLENVLALKEAGYTTFETLYINELDHGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +R +AL++IYR+MRPG+ T AE++F LFF D+YDLS+VGR+K N RL Sbjct: 353 RIDSSTNRLEALVEIYRMMRPGEPPTKDAAETLFTNLFFSEDRYDLSSVGRMKFNRRLGR 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 +T + K+DI+ ++K L+ +R+GK +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 ETSIGAGTLDKDDIVDVMKQLITIRDGKDDVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +T RR+S Sbjct: 473 ERAVKERLSLGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTDKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N +GF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLASFARTNDFGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RK+ DG VT+++ YLSA+EE IAQAN LDE G ++L+ CR GE L +I Sbjct: 593 RKIVDGVVTDEIDYLSAIEEGQFSIAQANVVLDETGRLADDLIPCRHRGETTLKESSEIT 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q+VSIAAS+IPFLE+DD+NR LMG NMQRQAVP L A+ P VGTGME VA Sbjct: 653 YMDVSPQQIVSIAASIIPFLEHDDANRALMGANMQRQAVPTLIADKPLVGTGMEKTVAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G V+ VDA RIVI+ E + +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVTVVAKRGGRVDYVDASRIVIKVNEEETVAGEAGIDIYNLTKYTRSNQNTCINQRPTC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ + D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 NVGEPIVAGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILISERVAMEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEI+ DIPNV E L +DE G++ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCVARDTKLGPEEISSDIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V GTV+DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVRGTVIDVQVFTRDGVEKDKRALEIEGM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ + +D DE IL I++R +L K + + R +W+ Sbjct: 953 QLRQVKKDLSDEFNILADGIFARAKNLL-----------IKSG--IEESRLESAQREKWF 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q ++ + Q+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 DLTLTDEDAQTELDQIAEQFVEIKADFDKKFEIKRRKITQGDDLQPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I P EDMP+ +GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1060 QIQPGDKMAGRHGNKGVISTIKPVEDMPYDVNGTPVDIVLNPLGVPSRMNIGQILETHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE--KISDYDDDSVLRVAEQW 1200 A G+G KI ++ K + +++ LRSFL++V G G+ + + ++ DD + R+A+ Sbjct: 1120 MAAHGIGVKIDRML---KEHEEMAKLRSFLKEVYGAGTTHQEVDLDNFSDDEITRLADNL 1176 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++TPVFDGA E I ML +ADL ESGQ L+DG TG F+RPVTVGY+YMLKLN Sbjct: 1177 RKGVPMATPVFDGATEAEIKHMLTLADLPESGQIALFDGRTGREFERPVTVGYMYMLKLN 1236 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1297 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEE 1341 >gi|302347128|gb|ADL27732.1| RNA polymerase beta subunit [Vibrio vulnificus] Length = 1336 Score = 1630 bits (4222), Expect = 0.0, Method: Composition-based stats. Identities = 714/1361 (52%), Positives = 975/1361 (71%), Gaps = 27/1361 (1%) Query: 7 FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPIT 66 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SVFPI Sbjct: 1 YTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSVFPIQ 56 Query: 67 AFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIK 126 +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++KDIK Sbjct: 57 SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TVKDIK 114 Query: 127 EQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIP 186 EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY RIIP Sbjct: 115 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 174 Query: 187 DQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWC 246 +G W+D EFD KD ++VRIDRRRK+P T L ALG +EEIL TF+ K+ + + Sbjct: 175 YRGSWLDFEFDPKDNLYVRIDRRRKLPSTIILRALGKSTEEILDTFFEKVNFEVKDQTLM 234 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 L D + G + + G +E G+++T+ ++ L+++GV + + + + G Sbjct: 235 MELVP-DRLRGETATFDIE--ANGTVYVEKGRRVTARHIRQLEKEGVDQIEVPVEYIVGK 291 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDK 366 ++D +N TGEI + A I ++L ++ + + + +L+ + +++ ++ TL D Sbjct: 292 VSSKDYINEATGEIIVAANQEISLEALAKLSQAGHKQLEVLFTNDLDHGPFMSETLRIDS 351 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 + DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + D + Sbjct: 352 SVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGRDDAE 411 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 + + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ER++ Sbjct: 412 EQGTLDETDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 471 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+SALG Sbjct: 472 KERLSLGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP 531 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPYR+V Sbjct: 532 GGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVV 591 Query: 607 DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 DG VT++V YLSA+EE IAQAN+ L+EDG+F +EL+ R GE L PRE +D++D Sbjct: 592 DGVVTDEVDYLSAIEEGQFVIAQANAKLNEDGTFADELITARQKGESGLHPREHVDYMDV 651 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKAE P VGTG+E VA SG Sbjct: 652 ATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKAEKPLVGTGIERNVAVDSGVT 711 Query: 727 IVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGD 786 VAKR GI++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V G+ Sbjct: 712 SVAKRGGIIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGE 771 Query: 787 EVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEE 846 V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+IHI+E Sbjct: 772 PVLRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 831 Query: 847 FEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPM 906 +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKGE+ + Sbjct: 832 LTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQL 891 Query: 907 TPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Q++ Sbjct: 892 TPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKE 951 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 +D +E IL+ + +R+ +L S + R +W + + Sbjct: 952 AKKDLTEEFQILEGGLLNRVKAVLLSGG-------------YSEAKLDTTDRKKWLELTL 998 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 +D+ +Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR IQ Sbjct: 999 EDDALQTQLEQLAEQYDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1058 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG A Sbjct: 1059 GDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAK 1118 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQWKSGV 1204 G+G KI ++ K +++ R FL+KV G I+ D+ V + + G+ Sbjct: 1119 GIGDKINQMV---KEQQELAKFREFLQKVYDLGETRQKVDIASLSDEEVRTLIGNLRGGL 1175 Query: 1205 PVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVS 1264 P++TPVFDGA E +I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLNH+V Sbjct: 1176 PIATPVFDGASEASIKELLKLGDLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVD 1235 Query: 1265 DKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVG 1324 DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV G Sbjct: 1236 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1295 Query: 1325 RTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 RT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 RTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELED 1336 >gi|78099444|gb|ABB20858.1| RNA polymerase subunit B [Acinetobacter gerneri] Length = 1362 Score = 1630 bits (4222), Expect = 0.0, Method: Composition-based stats. Identities = 721/1374 (52%), Positives = 973/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK PE+++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPEVMEAPYLLAIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R T+A P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTFAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T+ L AL +E+IL FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATAILRALDYTNEQILEMFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDITDAD-GKVIVEQGKRINARHVRQMEASGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + GE+ +A V+ + ++ I+ IL+ + ++ ++I +TL Sbjct: 295 LYERITAEDITLKD-GEVI-QANTVLGHDIMVKLAEGGIKQFNILFTNDIDRGSFIADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RTDTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII ++K LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDIIDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKCNN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT DV YLSA+EE IAQA+SS+D D + TEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTEDVEYLSAIEEVGTVIAQADSSVDGDNNLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++AKR G++E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIAKRGGMIEFVDASRVVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVSLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R GI+K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGIEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS +L+S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKGQESNGG-GSTKRGDKLSEELLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPSDEGIAERLTQIQVFLKEKSHEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVD+VLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDINGVPVDVVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ + + I+ LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGLAAKGLGEQIDKMLKEQRT---IAELRVFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ + GVP++TPVFDGA+E I +L +A+L SGQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LVLSGNLRKGVPLATPVFDGAEEGQIKELLELAELPRSGQTVLYDGRTGERFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTRVY++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRVYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|121634009|ref|YP_974254.1| DNA-directed RNA polymerase subunit beta [Neisseria meningitidis FAM18] gi|120865715|emb|CAM09442.1| DNA-directed RNA polymerase beta chain [Neisseria meningitidis FAM18] Length = 1394 Score = 1630 bits (4222), Expect = 0.0, Method: Composition-based stats. Identities = 698/1400 (49%), Positives = 958/1400 (68%), Gaps = 42/1400 (3%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF Sbjct: 1 MYMSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFN 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 S+FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D Sbjct: 61 SIFPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKP 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL+ Sbjct: 119 TVKEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 SARIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYL 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + L A L G ++D G ++ GK++T+ ++ + G+ L + Sbjct: 239 SSNGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEP 296 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI N Sbjct: 297 ESLLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISN 356 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 TLRTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRT 416 Query: 421 NLDTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDN 458 + + + EDI+A I LV+LRNG G +DDID+ Sbjct: 417 YEQKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDH 476 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 LGNRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF Sbjct: 477 LGNRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFG 536 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 SSQLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG Sbjct: 537 SSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 596 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 NIGL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG Sbjct: 597 NIGLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDG 656 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 + +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQR Sbjct: 657 NLIGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQR 716 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG 758 QAVP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + G Sbjct: 717 QAVPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVG 776 Query: 759 VDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPW 818 VDIY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW Sbjct: 777 VDIYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPW 836 Query: 819 HGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDE 878 +GYN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE Sbjct: 837 NGYNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDE 896 Query: 879 CGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGT 938 GI+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGT Sbjct: 897 SGIVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGT 956 Query: 939 VVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSG 998 V+DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A G Sbjct: 957 VIDVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGG 1016 Query: 999 PKGFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKI 1057 P K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K Sbjct: 1017 PMKLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKK 1076 Query: 1058 EKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTP 1117 +K+ GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG P Sbjct: 1077 KKLTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRP 1136 Query: 1118 VDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG 1177 VDIVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL ++ Sbjct: 1137 VDIVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNRLYN 1193 Query: 1178 TGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------ 1231 E + D+ ++ +A + G ++PVFDGA E I ML +A E Sbjct: 1194 GSGKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKL 1253 Query: 1232 G------QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 G Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGG Sbjct: 1254 GFNDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGG 1313 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PE Sbjct: 1314 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPE 1373 Query: 1346 SFNVLVKEMQALGLSIDLEN 1365 SFNVLVKE+++LGL IDLE Sbjct: 1374 SFNVLVKEIRSLGLDIDLER 1393 >gi|323492154|ref|ZP_08097315.1| DNA-directed RNA polymerase subunit beta [Vibrio brasiliensis LMG 20546] gi|323313605|gb|EGA66708.1| DNA-directed RNA polymerase subunit beta [Vibrio brasiliensis LMG 20546] Length = 1342 Score = 1630 bits (4221), Expect = 0.0, Method: Composition-based stats. Identities = 703/1367 (51%), Positives = 971/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTTEEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E+G+++T+ ++ L++ GV+ + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIE--ANGKTYVETGRRVTARHIRQLEKDGVEHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L + + + + L+ + +++ ++ TL Sbjct: 292 IVGKVASKDYINEATGEIIVGANQEISLEALANLSQAGHKALQTLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIER 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + + DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAQEQGTLDETDIIEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA++E IAQAN+ L E+G+F EEL+ R GE L PRE +D Sbjct: 592 RRVVDGVVTDEVDYLSAIQEGQYVIAQANTVLTEEGTFAEELITARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +A Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEDELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLIDGG-------------YTEAKLDAIDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ Q +E L QY+ ++ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDAQQTQLEQLAEQYDELRADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G I+ DD V + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFRDFLQKVYDLGETRQKVDIASLSDDEVRTLISNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA+E +I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGANESSIKELLKLGDLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|260222516|emb|CBA32157.1| DNA-directed RNA polymerase subunit beta [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1370 Score = 1630 bits (4221), Expect = 0.0, Method: Composition-based stats. Identities = 698/1375 (50%), Positives = 971/1375 (70%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG +++IP L+++QK +Y FL ++ P +R NEGLQAAF++ Sbjct: 1 MAYTYTERKRIRKNFGSRDSVLEIPYLLQMQKDAYTAFLQADVGPKKRTNEGLQAAFEAA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AKS 121 FPI + +G ++++ Y P FDV +C R LTYA ++ ++LI++D + TG K Sbjct: 61 FPIVSHNGFVEMKYLEYNLAKPAFDVRECQTRGLTYASAVRAKVQLIIYDRESSTGQNKV 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 VKEVKEQEVYMGEVPLMTGKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G+++E IL+ F+ + Sbjct: 181 ARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNNESILANFFVNDNFRLM 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 A L G + D +G+ V+ K++T+ + L++ G + + D Sbjct: 241 DSGAQMEFVAERL-RGEVARFDITD-KSGKVVVAKDKRVTARHTRELEQSGTSHISVPED 298 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G VA ++V+G+TGEI +A + + E L+++ + I+D+ +Y + ++ AYI T Sbjct: 299 FLIGRVVARNVVDGDTGEIVAKANEELTEALLKKLRTAGIQDLACIYTNELDQGAYISQT 358 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L TD+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N ++ Sbjct: 359 LRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKMG 418 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + EDI+A++KILVDLRNG+G +DDID+LGNRRVR VGE+ +NQYR GL R Sbjct: 419 RSESTGPMVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELAENQYRTGLAR 478 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ N L+ ITH RR+ Sbjct: 479 IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMNQTNPLAEITHKRRV 538 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIETP Sbjct: 539 SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETP 598 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V D KVTN++ YLSA+EE IAQAN++LD++G+ T +LV R GE ILV +++ Sbjct: 599 YRRVVDSKVTNEIDYLSAIEEGKYVIAQANAALDKEGTLTGDLVSAREKGESILVSADRV 658 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SP Q+VS+AASL+PFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A Sbjct: 659 QYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVAAV 718 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R GIV+ VDA R+VIR + + GVDIY L+K+QRSNQNT ++QRP+ Sbjct: 719 DSGTVVTATRGGIVDYVDATRVVIRVNDAEAQAGEVGVDIYNLIKYQRSNQNTNIHQRPI 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD++ + D+IADG STDLG++A+G+NMLVAFMPW+GYNFEDS+LISER+V+ED +TS Sbjct: 779 VKKGDKLSKGDVIADGASTDLGEIAIGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD LVGK+TPK Sbjct: 839 IHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVLPGDTLVGKVTPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV G SGTV+DV++F R GI ++ R+ + Sbjct: 899 GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGIQRDRRAQQIID 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ I++ + + R+ ++L G+ A GP+ K T L ++ + W Sbjct: 959 DELKRFRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPQKLAKGTKLDKAYLTSVEKFHW 1018 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + DE+V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV++A+K Sbjct: 1019 FDIRPADEEVASQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYIAVK 1078 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I P EDMP+L DGTPVDIVLNPLGVPSRMN+GQ+ E HL Sbjct: 1079 RRLQPGDKMAGRHGNKGVVSKITPVEDMPYLADGTPVDIVLNPLGVPSRMNIGQVLEVHL 1138 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA GLG++I ++ A+ +I R FLE+V + E ++ D V +A++ Sbjct: 1139 GWAGKGLGQRIGDMLQREAASTEI---RGFLEQVYNSTGRKEDLAQLSDAEVQEMAKELT 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDRPVTV 1251 SGVP ++PVFDGA E+ I ML++A D Q+ LYDG +G+ F+R TV Sbjct: 1196 SGVPFASPVFDGATEKEIGDMLQLAYPDDVAKAKGLTATRTQAQLYDGRSGDAFERTTTV 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYE+IV G + E G PESFNVLVKE+++LG+ I+L+ S Sbjct: 1316 QEMLTVKSDDVQGRTKVYENIVKGEHSIEAGMPESFNVLVKEIRSLGIDIELDRS 1370 >gi|261381386|ref|ZP_05985959.1| DNA-directed RNA polymerase, beta subunit [Neisseria subflava NJ9703] gi|284795633|gb|EFC50980.1| DNA-directed RNA polymerase, beta subunit [Neisseria subflava NJ9703] Length = 1392 Score = 1630 bits (4221), Expect = 0.0, Method: Composition-based stats. Identities = 693/1398 (49%), Positives = 955/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRENVLDVPFLLATQIDSYAKFLQLENAFDQRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLNVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L ++ +++I LY++ ++ YI +TL Sbjct: 297 LIGKALAADLIDPETGEVLASANDEITEELLAKLDIHGVKEITTLYINELDQGGYISSTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D++ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETADQQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETLAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD+DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVVDGKVTEEIDYLSAIEEGRYVIAQANADLDKDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+V+R + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ +D D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRQDLSDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEY-PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ + W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLASLSSKHDWFDIRLADEDLAKQLELIKLSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ K S LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRML---KEQRKASELREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ ++ +A + G ++PVFDGA E I ML +A E G Sbjct: 1194 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGF 1253 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|77359193|ref|YP_338768.1| DNA-directed RNA polymerase subunit beta [Pseudoalteromonas haloplanktis TAC125] gi|88909631|sp|Q3ILP9|RPOB_PSEHT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|76874104|emb|CAI85325.1| DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) [Pseudoalteromonas haloplanktis TAC125] Length = 1341 Score = 1630 bits (4220), Expect = 0.0, Method: Composition-based stats. Identities = 702/1364 (51%), Positives = 962/1364 (70%), Gaps = 23/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ Q S+ FL PD + GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLKSFKKFL----VPDADGDHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL+V D + ++ Sbjct: 57 FPIKSYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVVMDKEAPG---TV 113 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT GTFVI G +R++VSQLHRSPG+ FD+D+G+ SGK+LY Sbjct: 114 KDIKEQEVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNA 173 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD ++VRIDRRRK+P + L AL SE+IL F+ + Sbjct: 174 RVIPYRGSWLDFEFDAKDNLYVRIDRRRKLPASIILRALEYSSEDILGIFFDNTTFEVTD 233 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L + L G + + + GE +ESG+++T+ +K++++KG+K L + + Sbjct: 234 GKVLMELVPSRL-RGETAAFDI-KSEDGEVFVESGRRVTARHIKNIEKKGIKQLEVPHEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A++ V+ TGE+ A D + + + E+ + I LY++ V++ AY+ NTL Sbjct: 292 IIGRVLAKNYVDESTGEVVANANDELTLELMAELVKAGHTKIDTLYINEVDSGAYMSNTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + R +AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N R+ Sbjct: 352 NIDSSSSRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSTVGRMKFNSRVGY 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 DT + KEDI++++K+L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DTDTGPGTLSKEDIVSVMKVLIAIRNGVGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+++AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT++V YLSA+EE IAQANS+L E F +EL+ CR GE + R Sbjct: 592 RKVVDGVVTDEVDYLSAIEEGQFVIAQANSNLTETNEFVDELIPCRHKGESTFMGRMDQQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+QV+S+AA+LIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +AK Sbjct: 652 YMDVSPQQVISVAAALIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGIELTLAKD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG IVAKR G V DA RIV+ E + P +G+DIY L K+ RSNQNTC+NQ+P Sbjct: 712 SGVTIVAKRGGEVMYCDASRIVVNVHEEERVPGEAGIDIYNLTKYTRSNQNTCINQKPTC 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+N+ VAFMPW+GYNFEDS+L+SER+V ED T+I Sbjct: 772 MVGEPVTRGDVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVEEDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E + +ARDTKLG EEIT DIPNV E L +DE G++ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELQCIARDTKLGSEEITADIPNVGESALGKLDESGVVYIGAEVKSGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V+GTV+DV++F R G++K++R++ VE Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D ++E IL+ + R ++L D ++ + Sbjct: 952 QLRDAKKDFNEEFRILEAGVLDRARKLLIAAG-------------FDEDKLALLNAEKLL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ +E Q +E L QY+ K+ + +F+NK KI GDD+ PGVL++VKV++A+KR Sbjct: 999 TQSLAEEDKQAELEQLAAQYDELKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ G VDIVLNPLGVPSRMN+GQI ETH+G Sbjct: 1059 CIQPGDKMAGRHGNKGVISTIVPVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G++I+ ++ + + ++ ++ G I + DD + R+AE K Sbjct: 1119 LAARGIGERIEEMMKEQRELHELRAFIKQAYEI-GESRQVVDIDSFTDDEIRRLAENLKG 1177 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E I ML +A SGQ LYDG TG+ F+R VTVGY+YMLKLNH+ Sbjct: 1178 GLPIATPAFDGAKENEIKDMLELAGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHL 1237 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1238 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1297 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE + Sbjct: 1298 NGRTKMYKNIVDGNHKMEPGMPESFNVLLKEIRSLGINIELEEN 1341 >gi|297537524|ref|YP_003673293.1| DNA-directed RNA polymerase subunit beta [Methylotenera sp. 301] gi|297256871|gb|ADI28716.1| DNA-directed RNA polymerase, beta subunit [Methylotenera sp. 301] Length = 1390 Score = 1630 bits (4220), Expect = 0.0, Method: Composition-based stats. Identities = 696/1397 (49%), Positives = 961/1397 (68%), Gaps = 40/1397 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + +IP L+ +Q SY FL I D+R +GLQ+ F SV Sbjct: 1 MSYSFTEKKRLRKSFAKRESVQEIPYLLAMQLESYKAFLQAEIPADKRTEDGLQSTFASV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A L++VSY+ FDV +C R LTYA PL++ +RL + D ++ Sbjct: 61 FPIISHSGNARLDYVSYQLGAEPFDVKECQQRGLTYAAPLRVKVRLTIMDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG+LPLMT++G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVKEQEVYMGELPLMTENGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+PVT L ALG E+I++TF+ + Sbjct: 179 RIIPYRGSWLDFEFDPKDYLYFRIDRRRKMPVTILLKALGYTPEQIIATFFDFDTFHVSA 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 F L D + G +V GE ++ K++T ++ +++ GV + + D Sbjct: 239 KGVEFTLVP-DRLRGEVAKFDIV-AKDGEVLVAKDKRITVKHIRDMEKAGVSKIAVPQDF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G + ++IV+ ETGEI A D I E LE++ +++ +I LY + +++ YI TL Sbjct: 297 ILGRAIGKNIVDKETGEIVANANDEITESLLEKLIDAKVGEINTLYSNDLDHGDYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E++FN LFF+ D+YDLS VGR+K N R Sbjct: 357 RIDEIPDQYSARVAIYRMMRPGEPPTEDSVEALFNGLFFNEDRYDLSRVGRMKFNRRAFP 416 Query: 423 DTPDDVR--------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNR 462 + +D + + +DI+A+I +L++LRNG+G IDDID+LGNR Sbjct: 417 EKAEDRQSNWMRKFYETVGPRGAEGAYILSNDDILAVIGVLLELRNGRGEIDDIDHLGNR 476 Query: 463 RVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQL 522 R+RSVGE+ +NQ+R GL+R+ER++KER+S + D++MP DLINAKPV SA+ EFF SSQL Sbjct: 477 RIRSVGELAENQFRTGLVRVERAVKERLSQAESDNLMPHDLINAKPVSSAIREFFGSSQL 536 Query: 523 SQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGL 582 SQ + N LS ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL Sbjct: 537 SQFMDQTNPLSEITHKRRISALGPGGLTRERAGFEVRDVHSTHYGRMCPIETPEGPNIGL 596 Query: 583 VSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE 642 ++SL +AR N YGF+ETPYR+V KV++ + YLSA+EE IAQAN+ LD F E Sbjct: 597 INSLALYARTNEYGFLETPYRRVEGNKVSDTIDYLSAIEESQYMIAQANTDLDAKNMFVE 656 Query: 643 ELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP 702 +LV R E + +++ ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP Sbjct: 657 DLVSSRHHNEFTMTQPDRVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVP 716 Query: 703 LLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 L+AE VGTG+E VA SG + A+R G+V+ VD+ RIV+R + + GVDIY Sbjct: 717 CLRAEKAVVGTGIERTVAVDSGTTVQARRGGLVDYVDSGRIVVRVNDDEAKDGEVGVDIY 776 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 L K+ RSNQNT +NQRPLV+VGD++ R D+IADG STD+G+LALG+NMLV FMPW+GYN Sbjct: 777 NLTKYTRSNQNTNINQRPLVRVGDKLARGDVIADGASTDMGELALGQNMLVGFMPWNGYN 836 Query: 823 FEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGII 882 +EDS+LISER+V++D +TSIHIEE V+ARDTKLG EEIT+DI N+SE L +DE GII Sbjct: 837 YEDSILISERVVADDRYTSIHIEELTVVARDTKLGAEEITQDISNLSERMLGRLDEVGII 896 Query: 883 CVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDV 942 +GA+V GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV Sbjct: 897 YIGADVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDV 956 Query: 943 RIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 ++F R G++++ R+ + +Q+ +D D+ I++ + + R+ ++ G+ A GP Sbjct: 957 QVFTREGLERDSRAQQIIDDQLTHYKQDLADQMRIVEDDAFGRIRRLIEGKTATGGPNKL 1016 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 KK VL+++ ++ R W+ + DE+ R +E LK ++ + +F+ K K+ Sbjct: 1017 KKGDVLTAEYLASVGRYDWFDIRLTDEETARQLEQLKDSLAQARVNFDSKFEEKKRKLTQ 1076 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++P GV ++VKV++A+KR IQ GDKMAGRHGNKG++S+I P EDMP + DGTP+DIVL Sbjct: 1077 GDELPAGVQKMVKVYLAVKRRIQPGDKMAGRHGNKGVISKICPIEDMPHMADGTPMDIVL 1136 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG-SH 1181 NPLGVPSRMN+GQI E HLGWA GLG +I ++ + ++ +R FLE++ Sbjct: 1137 NPLGVPSRMNIGQILEVHLGWAAKGLGLRIDEML---REEAKVADIRKFLEQIYNDSTGK 1193 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLD----------ES 1231 E I+ + D VL +A +GVP +TPVFDGA E I +ML +A D + Sbjct: 1194 KEDINSFTDTEVLELARNLTNGVPFATPVFDGAAESDIKAMLDLAYPDDAARTKQLKFHA 1253 Query: 1232 GQS--ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNR 1289 G++ L+DG TG+ F+RPVTVGY+++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 GKTQVTLFDGRTGDAFERPVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQF 1313 Query: 1290 GGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV GRT+VYE+IV G + G PESFNV Sbjct: 1314 GGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVTGRTKVYENIVKGEHKIDAGMPESFNV 1373 Query: 1350 LVKEMQALGLSIDLENS 1366 LVKE+++L + IDL+ + Sbjct: 1374 LVKEIRSLAIDIDLDRN 1390 >gi|9911111|sp|Q59622|RPOB_NEIMB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|316985974|gb|EFV64913.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis H44/76] gi|325141146|gb|EGC63646.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis CU385] gi|325199345|gb|ADY94800.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis H44/76] Length = 1392 Score = 1630 bits (4220), Expect = 0.0, Method: Composition-based stats. Identities = 695/1398 (49%), Positives = 958/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A D + G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVA-DRLKGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STD G+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDFGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL ++ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNRLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|325203251|gb|ADY98704.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis M01-240355] Length = 1392 Score = 1630 bits (4220), Expect = 0.0, Method: Composition-based stats. Identities = 697/1398 (49%), Positives = 960/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A D + G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVA-DRLKGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD+DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDKDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|329122393|ref|ZP_08250980.1| DNA-directed RNA polymerase subunit beta [Haemophilus aegyptius ATCC 11116] gi|327473675|gb|EGF19094.1| DNA-directed RNA polymerase subunit beta [Haemophilus aegyptius ATCC 11116] Length = 1343 Score = 1630 bits (4220), Expect = 0.0, Method: Composition-based stats. Identities = 705/1365 (51%), Positives = 966/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E +FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEVLFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLS ++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSVIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITVDIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRNLLISSGA-------------DAAQLDKVERTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G +I +++ + + ++G GS +S + D+ VLR+A + Sbjct: 1119 GLAAKGIGDQINAMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLR 1178 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH Sbjct: 1179 KGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNH 1238 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1239 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1298 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV+GN + GTPESFNV++KE+++LGL+I+L+ Sbjct: 1299 VNGRTKMYKNIVSGNQHMDPGTPESFNVIMKEIRSLGLNIELDEE 1343 >gi|225076433|ref|ZP_03719632.1| hypothetical protein NEIFLAOT_01479 [Neisseria flavescens NRL30031/H210] gi|224952233|gb|EEG33442.1| hypothetical protein NEIFLAOT_01479 [Neisseria flavescens NRL30031/H210] Length = 1409 Score = 1630 bits (4220), Expect = 0.0, Method: Composition-based stats. Identities = 694/1398 (49%), Positives = 955/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 18 MSYSFTEKKRIRKSFAKRENVLDVPFLLATQIDSYAKFLQLENAFDQRTDDGLQAAFNSI 77 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 78 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 135 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 136 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 195 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 196 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 255 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 256 NGVQTDLIAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 313 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L ++ +++I LY++ ++ YI +TL Sbjct: 314 LIGKALAADLIDPETGEVLASANDEITEELLAKLDIHGVKEITTLYINELDQGGYISSTL 373 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D++ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 374 RTDETADQQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 433 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 434 QKLSEAQQNSWYGRLLNETLAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 493 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 494 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 553 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 554 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 613 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD+DG+ Sbjct: 614 GLINSLSVYARTNDYGFLETPYRRVVDGKVTEEIDYLSAIEEGRYVIAQANADLDKDGNL 673 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 674 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 733 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+V+R + + GVD Sbjct: 734 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEATAGEVGVD 793 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 794 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 853 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 854 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 913 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 914 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 973 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ +D D+ I D + + R+ ++ GQ A GP Sbjct: 974 DVQVFTREGIQRDKRAQSIIDSELKRYRQDLGDQLRIFDNDAFDRIERMIVGQKANGGPM 1033 Query: 1001 GFKKSTVLSSDLISEY-PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ + W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1034 KLAKGSEITTEYLASLSSKHDWFDIRLADEDLAKQLELIKLSLQQKREEADELYEIKKKK 1093 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1094 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1153 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ K S LR FL K+ Sbjct: 1154 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRML---KEQRKASELREFLNKLYNGS 1210 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ V+ +A + G ++PVFDGA E I ML +A E G Sbjct: 1211 GKKEDLDSLTDEEVIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGF 1270 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1271 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1330 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1331 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1390 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1391 NVLVKEIRSLGLDIDLER 1408 >gi|163803770|ref|ZP_02197626.1| DNA-directed RNA polymerase subunit beta [Vibrio sp. AND4] gi|159172428|gb|EDP57298.1| DNA-directed RNA polymerase subunit beta [Vibrio sp. AND4] Length = 1342 Score = 1629 bits (4219), Expect = 0.0, Method: Composition-based stats. Identities = 709/1367 (51%), Positives = 971/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL+VFD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVVFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG SEEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSEEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E G+++T+ ++ L++ V + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIE--ANGKTYVEQGRRVTARHIRQLEKDSVDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D VN TGEI + A I ++L + + + + L+ + +++ ++ TL Sbjct: 292 IVGKVASKDYVNEATGEIIVNANQEISLEALANLSQAGHKSLETLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RVDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFAEERYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAQEQGTLDELDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA+EE IAQAN++L E+G F +EL+ R GE L PRE Sbjct: 592 RRVVDGVVTDEVDYLSAIEEGQFVIAQANAALTEEGGFADELITARQKGESGLHPREHAQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVSRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLIDGG-------------YSEAKLDTTDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE--KISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G + I+ DD V + + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFREFLQKVYDLGETRQQVDIASLSDDEVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E +I ++L++ADL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGAPEASIKALLKLADLPESGQLKLFDGRTGDEFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|71278694|ref|YP_271413.1| DNA-directed RNA polymerase subunit beta [Colwellia psychrerythraea 34H] gi|88909130|sp|Q47UV9|RPOB_COLP3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|71144434|gb|AAZ24907.1| DNA-directed RNA polymerase, beta subunit [Colwellia psychrerythraea 34H] Length = 1342 Score = 1629 bits (4219), Expect = 0.0, Method: Composition-based stats. Identities = 697/1366 (51%), Positives = 980/1366 (71%), Gaps = 26/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK+ ++++ P L+ +Q S+ F+ + GL+AAF+S+ Sbjct: 1 MAYSYFEKKRIRKDFGKSVQVMEYPFLLSIQLDSFRKFIDTD----PTGETGLEAAFRSI 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI A+SG++ L++VSY P FDV +C R +TY+ PL++ LRL+V+D + G ++ Sbjct: 57 FPIKAYSGSSELQYVSYRLGEPLFDVKECQIRGVTYSAPLRVKLRLVVYDKEAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L AL +EEIL+ FY Y+ +G Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALEYSTEEILAMFYDTTDYTIKG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G + I GE ++ESG+++T+ +++L + ++ L + +D Sbjct: 235 DKLIMDLIPERL-RGETAIFDI-SIKKGEVLVESGRRITARHIRALSKAKLEKLEVPADY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +++ ++ TGE+ EA +I + L E+ + + + LY++ + +Y+ +TL Sbjct: 293 IVGRVLSKAYIDKSTGEVIAEANAIITLELLAELSQAGHKVLSTLYMNEFDVGSYMSDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + ++ +AL+++YR+MRPG+ T AE +F+ LFF S++YDLSTVGR+K N R+ Sbjct: 353 RVDSSTNKLEALVEVYRMMRPGEPPTKDAAEGLFSNLFFASERYDLSTVGRMKFNRRVGN 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + KEDII+++K L+ +R+GKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 ADDVGTGILSKEDIISVMKTLIGIRDGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N +GF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSCYARTNDFGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+++ YLSA+EE N IAQAN+ ++ ++LV CR E IL ++ Sbjct: 593 RKVIDGLVTDEIDYLSAIEEGNFVIAQANAERNDSNKLVQDLVNCRHRNEFILKASAEVQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L+ + P VGTGME VVA Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGSNMQRQAVPTLRVDKPLVGTGMEKVVAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V VDA RIV++ E ++ +G+DIY L K+ RSNQNTC+NQRP+ Sbjct: 713 SGVTAVAKRGGVVSYVDASRIVVKVNENEMHAGEAGIDIYNLTKYTRSNQNTCINQRPVC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 ++G+ V R D++ADGPSTD+G+LALG+NM +AFMPW+GYNFEDSML+SER+ ED FT+I Sbjct: 773 RMGEPVVRGDVLADGPSTDMGELALGQNMRIAFMPWNGYNFEDSMLLSERVAIEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE G++ +GAEVN GDILVGK+TPKG Sbjct: 833 HIQELTCIARDTKLGSEEITADIPNVGESALSKLDEAGVVYIGAEVNGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV+IF R G++K+ R++ +E+ Sbjct: 893 ETQLTPEEKLLRAIFGEKAADVKDSSLRVPNSVKGTIIDVQIFTRDGVEKDARAVEIEQM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D DE IL+ IY+R ++L L+ ++ R +W Sbjct: 953 QLKEVKKDLGDELSILEDGIYARTKKLLLSAG-------------LNESDLTSMSRDKWL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E + Q++ K + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 TQNLADEGQQAELEQIAEQFDNIKEDFDKKFEVKRRKITQGDDLQPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S ++P EDMP+ + G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1060 HIQPGDKMAGRHGNKGVISNVVPVEDMPYDQFGVPVDIVLNPLGVPSRMNIGQILETHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE--KISDYDDDSVLRVAEQW 1200 AC G+G+KI ++ +A +I LR+F+++V G + ++ + DD VLR+A Sbjct: 1120 MACRGIGEKINRML---EAQQEIHKLRNFIQEVYNVGESRQVVDVASFSDDEVLRLAGNL 1176 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+P++TP FDGA E+ I + +AD+ +SGQ +L DG TG F+RPVTVGY+YMLKLN Sbjct: 1177 RAGLPIATPAFDGAAEKEIKELFVLADMPQSGQFVLTDGRTGREFERPVTVGYMYMLKLN 1236 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y+++V G+ E G PESFNVL+KE+++LG++I+L+ Sbjct: 1297 DVNGRTKMYKNLVDGDHRMEPGIPESFNVLLKEIRSLGINIELDKD 1342 >gi|330444941|ref|ZP_08308595.1| DNA-directed RNA polymerase, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493059|dbj|GAA03092.1| DNA-directed RNA polymerase, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1341 Score = 1629 bits (4218), Expect = 0.0, Method: Composition-based stats. Identities = 697/1366 (51%), Positives = 961/1366 (70%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P++++ P L+ +Q S+ F+ + + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLEAPYLLSIQLDSFQKFIEQD----PEGHYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL+++D D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVMYDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L AL +++IL F+ KI + +G Sbjct: 175 RVIPYRGSWLDFEFDPKDSVFVRIDRRRKLPASIILRALNYTTDQILDMFFEKIHFEVQG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G +E G+++T+ ++ L + GV + + + Sbjct: 235 KSLVMELVP-DRLRGETASFDIE--ANGTVYVEKGRRITARHIRQLGKDGVDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G + D ++ TGE+ + A + ++L + + + I +L+ + +++ Y+ +TL Sbjct: 292 IVGKIASRDYIDENTGELIVAANQELSLEALALLSQAGHKSIDVLFTNDLDHGPYMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE +F LFF D+YDLS VGR+K N L Sbjct: 352 RIDNTTDRLSALVEIYRMMRPGEPPTREAAEQLFESLFFSEDRYDLSAVGRMKFNSSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + DII +++ L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DETTGPGTLDHADIIDVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSVFARCNPYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKV+ ++ YLSA+EE IAQAN++L+EDGSF +EL+ R G+ L PR+ + Sbjct: 592 RKVVDGKVSEEIEYLSAIEEGLYVIAQANAALNEDGSFADELITARQKGDSGLHPRDHVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP ++A+ P VGTG+E + Sbjct: 652 YMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTIRADKPLVGTGIERQIGVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ + +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGTVQSVDASRIVIKVNDDELIPGEAGIDIYNLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 LPGEPVSRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP V+GT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPGSVTGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S D I+ R + Sbjct: 952 QLKEAKKDITEEFQILEGGLLARVRTLLLSAG-------------YSEDKIASMNRDALF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE +Q +E L QY+ K+ + +F++K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 AVTLDDEALQNQLEQLAEQYDELKAEFDKKFESKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G VDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQTVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G K+ ++ K ++ R+FL+KV G ++ DD V + + Sbjct: 1119 LAAKGIGDKLNDML---KEQQELHKFRNFLQKVYDLGDTRQKVDVAALTDDEVRTLVQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E +I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RKGLPIATPVFDGAPEPSIKELLKLGDLPESGQLKLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|226951786|ref|ZP_03822250.1| RNA polymerase subunit B [Acinetobacter sp. ATCC 27244] gi|294649034|ref|ZP_06726480.1| DNA-directed RNA polymerase subunit beta [Acinetobacter haemolyticus ATCC 19194] gi|78099448|gb|ABB20860.1| RNA polymerase subunit B [Acinetobacter haemolyticus] gi|226837326|gb|EEH69709.1| RNA polymerase subunit B [Acinetobacter sp. ATCC 27244] gi|292825065|gb|EFF83822.1| DNA-directed RNA polymerase subunit beta [Acinetobacter haemolyticus ATCC 19194] Length = 1362 Score = 1629 bits (4218), Expect = 0.0, Method: Composition-based stats. Identities = 712/1374 (51%), Positives = 970/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P +++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPHVMEAPYLLSIQVDSYRTFLQGGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ VRIDRRRK+ T L AL +E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVFVRIDRRRKLLATVILRALNYTNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L D + G ++D D G+ ++E GK++ + ++ ++ + L + + Sbjct: 237 GSYQIDLVP-DRLRGEMAQFDILDND-GKAIVEQGKRINARHVRQMEAANLAKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + I A V+ + + +I ++ IL+ + ++ ++ +TL Sbjct: 295 LYERITAEDITLKDGDVI--PANTVLSHEVMVKIAEGGVKQFNILFTNDIDRGPFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHDDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+DV YLSA+EE IAQA+S++D+DG+ TEE+V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEMVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + E++ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMSPERVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G +E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGAIEYVDASRIVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKGQESNGGGTT-KRGDKLSEDVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPADEAIAERLTQIQVFLKEKSIEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDIHGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ + I+ LR+FL+K+ G E + D+ V Sbjct: 1132 QILETHLGMAAKGLGEQIDKMLQQQRT---IAELRAFLDKIYNKVGGEQEDLDSLTDEEV 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L++A ++GVP++TPVFDGA+E I +L +A+L +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LKLAGNLRAGVPLATPVFDGAEESQIKELLELAELPRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|254671128|emb|CBA08144.1| DNA-directed RNA polymerase beta chain [Neisseria meningitidis alpha153] Length = 1392 Score = 1629 bits (4218), Expect = 0.0, Method: Composition-based stats. Identities = 698/1398 (49%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + S +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDISGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL ++ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNRLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ ++ +A + G ++PVFDGA E I ML +A E G Sbjct: 1194 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGF 1253 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|309379169|emb|CBX22300.1| DNA-directed RNA polymerase, beta subunit [Neisseria lactamica Y92-1009] Length = 1392 Score = 1629 bits (4218), Expect = 0.0, Method: Composition-based stats. Identities = 698/1398 (49%), Positives = 956/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG +E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYGNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L I + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDIANAGLTRLDIEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVVDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLSDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P + W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLTGLPSKHDWFDIRLTDEDLAKQLELIKLSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ ++ +A + G ++PVFDGA E I ML +A E G Sbjct: 1194 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGF 1253 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GEPFDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|260902138|ref|ZP_05910533.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus AQ4037] gi|308110161|gb|EFO47701.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus AQ4037] Length = 1343 Score = 1629 bits (4218), Expect = 0.0, Method: Composition-based stats. Identities = 708/1368 (51%), Positives = 971/1368 (70%), Gaps = 28/1368 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHD-KGRASLSGKLLYA 181 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD D KG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDDKGKTHSSGKVLYN 174 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 175 ARVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKSTEEILDIFFEKVNFEVK 234 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 L D + G S + G+ +E G+++T+ ++ L++ GV + + + Sbjct: 235 DQTLLMELVP-DRLRGETASFDIES--NGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVE 291 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 + G ++D +N TGEI + A I ++L + + + + +L+ + +++ ++ T Sbjct: 292 YIVGKVASKDYINEATGEIIVNANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSET 351 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 LRIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIG 411 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + + + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R Sbjct: 412 REDAQEQGTLDETDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 471 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+ Sbjct: 472 VERAVKERLSLGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRI 531 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETP Sbjct: 532 SALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETP 591 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V DG VT++V YLSA+EE IAQAN+ L+EDG+F +EL+ R GE L PRE Sbjct: 592 YRRVVDGVVTDEVDYLSAIEEGQFVIAQANAKLNEDGTFADELITARQKGESGLHPREHA 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA Sbjct: 652 QYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAV 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 712 DSGVTAVAKRGGVIQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+ Sbjct: 772 VMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 832 IHIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQ 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ + +R+ +L S + R +W Sbjct: 952 MQLKEAKKDLTEEFQILEGGLLNRVKAVLIEGG-------------YSEAKLDATDRKKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+K Sbjct: 999 LELTLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HL Sbjct: 1059 RRIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G KI ++ K +++ R FL+KV G I+ DD V + + Sbjct: 1119 GLAAKGIGDKINQMV---KEQQELAKFREFLQKVYDLGDTRQKVDIASLSDDEVRTLIKN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E +I ++L +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKL Sbjct: 1176 LRGGLPIATPVFDGAPEASIKALLELADLPTSGQLTLFDGRTGDAFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DDV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DDVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1343 >gi|325135137|gb|EGC57763.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis M13399] Length = 1392 Score = 1629 bits (4218), Expect = 0.0, Method: Composition-based stats. Identities = 697/1398 (49%), Positives = 956/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKLSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ K S LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRML---KEQRKASELREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|261254078|ref|ZP_05946651.1| DNA-directed RNA polymerase beta subunit [Vibrio orientalis CIP 102891] gi|260937469|gb|EEX93458.1| DNA-directed RNA polymerase beta subunit [Vibrio orientalis CIP 102891] Length = 1342 Score = 1629 bits (4218), Expect = 0.0, Method: Composition-based stats. Identities = 701/1367 (51%), Positives = 970/1367 (70%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTTEEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E+G+++T+ ++ L++ GV+ + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIE--ANGKTYVETGRRVTARHIRQLEKDGVEHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L + + + + L+ + +++ ++ T+ Sbjct: 292 IVGKVASQDYINEATGEIIVGANQEISLEALANLSQAGHKALQTLFTNDLDHGPFMSETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF ++YDLSTVGR+K N + Sbjct: 352 RIDSTVDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSEERYDLSTVGRMKFNSSIER 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + + DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAQEQGTLDETDIIEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA++E IAQAN+ L E+G+F EEL+ R GE L PRE +D Sbjct: 592 RRVVDGIVTDEVDYLSAIQEGQYVIAQANTVLTEEGTFAEELITARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +A Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG V+KR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVSKRGGVIQSVDASRIVVKVNEDELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLIDGG-------------YTEAKLDSIDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDAQQSQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G I+ D V + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFRDFLQKVYDLGETRQKVDIASLSDGEVRTLINNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA+E +I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGANESSIKELLKLGDLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|254509112|ref|ZP_05121213.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus 16] gi|219547950|gb|EED24974.1| DNA-directed RNA polymerase, beta subunit [Vibrio parahaemolyticus 16] Length = 1342 Score = 1629 bits (4218), Expect = 0.0, Method: Composition-based stats. Identities = 701/1367 (51%), Positives = 972/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTTEEILDIFFEKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E+G+++T+ ++ L++ GV + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIE--ANGKVYVETGRRVTARHIRQLEKDGVDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVASKDYINEATGEIIVGANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIER 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + + DI+ ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAQEQGTLDETDIVEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA++E IAQAN+ L E+G+F EEL+ R GE L PRE +D Sbjct: 592 RRVVDGVVTDEVDYLSAIQEGQYVIAQANTVLTEEGTFAEELITARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +A Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEDELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLIDGG-------------YTEAKLDAIDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDAQQSQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G ++ DD V + + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFRDFLQKVYDLGETRQKVDVASLSDDEVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E++I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGASEQSIKELLKLGDLPESGQLKLFDGRTGDEFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|78099434|gb|ABB20853.1| RNA polymerase subunit B [Acinetobacter genomosp. 16BJ] Length = 1362 Score = 1629 bits (4217), Expect = 0.0, Method: Composition-based stats. Identities = 708/1374 (51%), Positives = 971/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P +++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPHVMEAPYLLSIQVDSYRTFLQGGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ VRIDRRRK+ T L AL +E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVFVRIDRRRKLLATVVLRALNYSNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L D + G ++D D G+ ++E GK++ + ++ ++ + L + + Sbjct: 237 GSYQIDLVP-DRLRGEMAQFDILDND-GKAIVEQGKRINARHVRQMEAANLAKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AED + + G++ A V+ + L ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAED-IPLKNGDVIA-ANTVLSHEILVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+DV YLSA+EE IAQA+S++D+DG TEE+V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGHLTEEMVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + E++ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMSPERVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G +E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIADRGGAIEYVDASRIVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ L+ D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKGQESNGG-GSTKRGDKLAEDVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPTDEAIAERLTQIQVFLKEKSYEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG K++ ++ + + + LR FL+K+ G E++ D + Sbjct: 1132 QILETHLGMAAKGLGDKLEKMLKEQRT---VLELRDFLDKIYNKVGGEQEELDSLTDAEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALSGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|325131073|gb|EGC53796.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis OX99.30304] Length = 1392 Score = 1629 bits (4217), Expect = 0.0, Method: Composition-based stats. Identities = 699/1398 (50%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG +E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYGNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ ++ +A + G ++PVFDGA E I ML +A E G Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGF 1253 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GEPFDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|167855652|ref|ZP_02478410.1| DNA-directed RNA polymerase beta chain [Haemophilus parasuis 29755] gi|167853224|gb|EDS24480.1| DNA-directed RNA polymerase beta chain [Haemophilus parasuis 29755] Length = 1342 Score = 1629 bits (4217), Expect = 0.0, Method: Composition-based stats. Identities = 698/1367 (51%), Positives = 960/1367 (70%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK +++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRSQVLNVPYLLTIQLDSFDKFIQRD----PEGLQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +GA L++VSYE P FDV +C R TYA PL++ LRL+ FD + G ++ Sbjct: 57 FPIVSSNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHASGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEIL+ F+ + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILNMFFETATFHIED 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +ESG+++T+ +++L++ + + + ++ Sbjct: 235 NRLLMTLVPERL-RGETAAFDIE--ANGKIYVESGRRITARHIRALEKDNITQIQVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A D V+ TGEI A I ++L + + +I +L+ + ++ YI TL Sbjct: 292 IVGRVTARDYVDLSTGEIVCPANSEIGLETLAALAQAGYNEIEVLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ +FF +D+YDLS VGR+K N L++ Sbjct: 352 RIDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSTDRYDLSAVGRMKFNRSLDI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DII ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGVGTGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 532 ALGSGGLTRERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT ++ YLSA+EE IAQANS+LDE+ FT+ V CR GE L E+I Sbjct: 592 RKVVNGQVTEEIEYLSAIEEGAYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYRPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A++AKR G ++ VDA RIV++ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVIAKRGGTIQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK+G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VKLGEPVGRGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ + PEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R+ +E Sbjct: 892 GETQLIPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKDIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L + R +W Sbjct: 952 IQLREAKKDLTEELEILEAGLFTRVRNLLLEGGVA-------------QATLDNLAREKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTLDDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I +I K +I+ LR +++K G G+ + +S + D+ V+R+A+ Sbjct: 1119 GLAARGIGDQIDKMI---KQQQEIAKLREYIQKAYDLGHGAQSVDLSTFSDEEVMRLAQN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E I +L + L SGQ LYDG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQLGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G E G PESFNV+ KE++AL + ++L+ + Sbjct: 1296 DDVNGRTKMYKNIVDGTHYMEPGIPESFNVITKEIRALAIDMELDEA 1342 >gi|319761186|ref|YP_004125123.1| DNA-directed RNA polymerase, beta subunit [Alicycliphilus denitrificans BC] gi|330823046|ref|YP_004386349.1| DNA-directed RNA polymerase subunit beta [Alicycliphilus denitrificans K601] gi|317115747|gb|ADU98235.1| DNA-directed RNA polymerase, beta subunit [Alicycliphilus denitrificans BC] gi|329308418|gb|AEB82833.1| DNA-directed RNA polymerase, beta subunit [Alicycliphilus denitrificans K601] Length = 1374 Score = 1629 bits (4217), Expect = 0.0, Method: Composition-based stats. Identities = 692/1379 (50%), Positives = 962/1379 (69%), Gaps = 18/1379 (1%) Query: 1 MAKG--VVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAA 58 MA+ + R+RK FG ++ +P L+++Q+ +Y FL P +R +EGLQAA Sbjct: 1 MAQTSTYSYTERKRIRKSFGSRDSVLKVPYLLQMQRDAYTAFLQAETPPQKRTSEGLQAA 60 Query: 59 FKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFT- 117 F + FPI + +G ++FV Y P FDV +C R LT+A ++ ++LI++D + T Sbjct: 61 FNAAFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTA 120 Query: 118 GAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 +K +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGK Sbjct: 121 QSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGK 180 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIV 237 LL++ RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G++ E IL+ F+ Sbjct: 181 LLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDN 240 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 + L G + D +G+ V+ K++T+ + L++ G + Sbjct: 241 FRLMDSGAQMEFVPERL-RGEVARFDITD-KSGKVVVAKDKRVTARHTRELEQSGTTHIS 298 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 + D L G VA +IV+ +TGEI +A + + E L+++ + ++++ +Y + ++ AY Sbjct: 299 VPEDFLLGRVVARNIVDPDTGEILAKANEELTEALLKKLRSAGVQELQAIYTNELDQGAY 358 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 I TL D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N Sbjct: 359 ISQTLRIDETADEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFN 418 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 ++ + +DI++++KILVDLRNGKG +DDID+LGNRRVR VGE+ +NQYR Sbjct: 419 AKVGRSEATGPMVLDNDDILSVVKILVDLRNGKGEVDDIDHLGNRRVRCVGELAENQYRT 478 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL R+E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH Sbjct: 479 GLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITH 538 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGF Sbjct: 539 KRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGF 598 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 IETPYR+V DGKVT+++ YLSA+EE IAQAN++LDE+G T +LV R GE LV Sbjct: 599 IETPYRRVVDGKVTSEIDYLSAIEEGKYIIAQANAALDEEGRLTGDLVSAREQGESTLVS 658 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 E++ ++D SP Q+VS+AASL+PFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E Sbjct: 659 AERVQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIER 718 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 V A SG + A+R G+V+ VDA RIV+R + + GVDIY L+K+QRSNQNT ++ Sbjct: 719 VAAVDSGTVVTARRGGVVDYVDATRIVVRVHDAEAVAGEVGVDIYNLIKYQRSNQNTNIH 778 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 QRP+VK GD + + D+IADG STDLG++A+G+NML+AFMPW+GYNFEDS+LISER+V+ED Sbjct: 779 QRPIVKKGDVLAKGDVIADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAED 838 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 +TSIHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD LVGK Sbjct: 839 RYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGK 898 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G SGTV+DV++F R GI +++R+ Sbjct: 899 VTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGIQRDKRAQ 958 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 + ++++ D +D+ I++ + + R+ ++L G+ A GP K + + ++ Sbjct: 959 QIIDDELKRFRLDLNDQLRIVEADAFDRIEKLLVGKKANGGPHKLAKGATIDKEYLAGVE 1018 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 + W+ DE V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV+ Sbjct: 1019 KFHWFDIRPADEAVAAQLESMKNAMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVY 1078 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR +Q GDKMAGRHGNKG+VS+I P EDMP + DGTPVDIVLNPLGVPSRMN+GQ+ Sbjct: 1079 LAVKRRLQPGDKMAGRHGNKGVVSKITPVEDMPHMADGTPVDIVLNPLGVPSRMNIGQVL 1138 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 E HLGWA GLG++I ++ + +++ +R FL +V + E +S DD V+ +A Sbjct: 1139 EVHLGWAGKGLGQRIGDML---RDQANVAEMRKFLGEVYNSRGRKEDLSQLSDDEVMSMA 1195 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLD----ESG------QSILYDGLTGEPFDR 1247 GVP ++PVFDGA E I ML++A D G Q+ L DG TGE F+R Sbjct: 1196 ANLTGGVPYASPVFDGASEAEIKDMLKLAYPDDIKERKGLTDTRTQAWLIDGRTGERFER 1255 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 P T+GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1256 PTTIGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1315 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AYVLQEMLT+KSDDV GRT+VYE+IV G E G PESFNVLVKE+++LGL I+LE S Sbjct: 1316 AYVLQEMLTVKSDDVQGRTKVYENIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS 1374 >gi|78099456|gb|ABB20864.1| RNA polymerase subunit B [Acinetobacter parvus] Length = 1362 Score = 1629 bits (4217), Expect = 0.0, Method: Composition-based stats. Identities = 708/1374 (51%), Positives = 974/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P +++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPHVMEAPYLLSIQVDSYRTFLQGGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ VRIDRRRK+ T L AL +E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVFVRIDRRRKLLATVILRALNYSNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L D + G ++D D G+ ++E GK++ + ++ ++ + L + + Sbjct: 237 GSYQIDLVP-DRLRGEMAQFDILDND-GKAIVEQGKRINARHVRQMEAANLAKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI ++G++ A V+ + +I + ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAEDIT-LKSGDVI-PANTVLSHDIMVKIAENGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHDDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S++D+DG+ TEE+V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSAVDKDGNLTEEMVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + E++ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMSPERVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G +E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGAIEYVDASRIVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS++++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKGQESNGG-GSTKRGDKLSAEVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPNDEAIAERLTQIQVFLKEKSYEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E++ D + Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VIELREFLDKIYNKVGGEQEELDSLTDAEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALSGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|158513168|sp|A1KRG6|RPOB_NEIMF RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|325143224|gb|EGC65563.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis 961-5945] gi|325197420|gb|ADY92876.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis G2136] Length = 1392 Score = 1629 bits (4217), Expect = 0.0, Method: Composition-based stats. Identities = 697/1398 (49%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL ++ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNRLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ ++ +A + G ++PVFDGA E I ML +A E G Sbjct: 1194 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGF 1253 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|145588235|ref|YP_001154832.1| DNA-directed RNA polymerase, beta subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189043862|sp|A4SUV4|RPOB_POLSQ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|145046641|gb|ABP33268.1| DNA-directed RNA polymerase subunit beta [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 1366 Score = 1629 bits (4217), Expect = 0.0, Method: Composition-based stats. Identities = 708/1374 (51%), Positives = 959/1374 (69%), Gaps = 18/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F RVRK F K +P LI Q SY FL + R EGLQAAF S Sbjct: 1 MNYSFTERKRVRKSFAKRVNNHQVPYLIATQLESYAKFLQADKPAMSRLTEGLQAAFTSA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A +E+VSY+ P FDV +C R TY L+ +RLI++D + T + Sbjct: 61 FPIVSNNGYARMEYVSYQLSQPPFDVKECQQRGYTYHSALRAKVRLIIYDREAPT---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KE +YMG++PLMT++G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEVKESEVYMGEIPLMTENGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G+++E+IL+ F+ +S Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNNEQILANFFNFDHFSLTA 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G + ++D G VI+ K++ + ++ L+ K + + D Sbjct: 238 NGGSMEFVPERL-RGQLANFDVLD-KNGVVVIQKDKRINAKHIRELEAAKTKTIAVPDDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G VA +IV+ ++GEI A D I E+ L + + I+ + +Y + +++ AYI TL Sbjct: 296 LVGRVVARNIVDPDSGEILAYANDEITEELLATLRDAGIKQLETIYTNDLDSGAYISQTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D+ A + IYR+MRPG+ T E++F LF++ D YDLS VGR+K+N RLN Sbjct: 356 RTDETADQMAARIAIYRMMRPGEPPTEDAVEALFQRLFYNEDTYDLSRVGRMKVNSRLNR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDI+ IK LVDLRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 PEMEGPMVLSNEDILDTIKSLVDLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRIS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL FAR+N +GF+ETPY Sbjct: 536 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEHGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV + KV+++VVYLSA+EE IAQAN+++D+ G +ELV R AGE I+V E+ID Sbjct: 596 RKVSNSKVSDEVVYLSAIEEAKYVIAQANATIDKSGKLADELVSARQAGETIMVSPERID 655 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 FID +P Q+VS AASL+PFLE+DD+NR LMG NM RQAVP L+ + P VGTG+E +VA Sbjct: 656 FIDVAPSQIVSAAASLVPFLEHDDANRALMGANMSRQAVPCLRPDKPLVGTGLERIVAVD 715 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG I+A R GIV+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 716 SGTVILATRGGIVDYVDANRIVIRVNDDETAAGEVGVDIYNLIKYTRSNQNTNINQRPIV 775 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD V R D++ADG STDLG+LALG+NM VAFMPW+GYNFEDS+LISE++V+ED +TSI Sbjct: 776 QAGDRVVRGDVVADGASTDLGELALGQNMTVAFMPWNGYNFEDSILISEKVVAEDRYTSI 835 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLG EEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 836 HIEELSVVARDTKLGSEEITRDISNLAESQLSRLDESGIVYIGAEVEAGDVLVGKVTPKG 895 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R GI+++ R+ ++ +E Sbjct: 896 ETTLTPEEKLLRAIFGEKASDVKDTSLRVPSGMIGTVIDVQVFTREGIERDARAQAIIQE 955 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ D +D+ I++ + + RL ++L G+ A GP+ K T + + ++ + W+ Sbjct: 956 ELQRYRLDLNDQLRIVEGDAFMRLEKLLIGKVANGGPQKLAKGTKIDKEYLASLDKYHWF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 DE+V VE++K E + ++ F+ K K+ GDD+ GV ++VKV++A+KR Sbjct: 1016 DVRPADEEVATQVEAIKSSIEAKRKQFDEAFEEKRTKLTQGDDLQAGVTKMVKVYLAVKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I P EDMPF+ DG PVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RLQPGDKMAGRHGNKGVVSKIAPAEDMPFMADGRPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA G+GK+I ++ + + LR FL+++ E I ++ D+ + +AE + Sbjct: 1136 WAAQGIGKRIDEMV---RQQVKQAELRKFLKQLYNETGRIEDIDNFTDEQITVLAENLRQ 1192 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADL----------DESGQSILYDGLTGEPFDRPVTVG 1252 G+P +TPVFDGA E I ML +A Q IL DG TG+ F+RPVTVG Sbjct: 1193 GLPFATPVFDGATEAEIGRMLELAYPEEVATSLKMTPSRQQMILCDGRTGDQFERPVTVG 1252 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 +++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1253 VMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1312 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE+IV G T + G PESFNVLVKE+++LG+ ID+E + Sbjct: 1313 EMLTVKSDDVAGRTKVYENIVKGEHTIDAGMPESFNVLVKEIRSLGIDIDMERN 1366 >gi|325133045|gb|EGC55717.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis M6190] gi|325139024|gb|EGC61570.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis ES14902] gi|325145329|gb|EGC67606.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis M01-240013] gi|325205224|gb|ADZ00677.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis M04-240196] Length = 1392 Score = 1628 bits (4216), Expect = 0.0, Method: Composition-based stats. Identities = 697/1398 (49%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL ++ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNRLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ ++ +A + G ++PVFDGA E I ML +A E G Sbjct: 1194 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGF 1253 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|88909646|sp|Q5E238|RPOB_VIBF1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1341 Score = 1628 bits (4216), Expect = 0.0, Method: Composition-based stats. Identities = 707/1367 (51%), Positives = 964/1367 (70%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFTKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + LE+VSY P+FDV +C R +TY+ PL++ LRL+V+D D ++ Sbjct: 57 FPIQSYNGNSKLEYVSYNLREPEFDVKECQIRGVTYSAPLRVKLRLVVYDKDAPAN--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L AL +EEIL F+ K+ Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNKTTEEILDLFFDKVFEV--K 232 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D + + G + + G+ +E+G+++T+ ++ L + + + + D Sbjct: 233 DQTLMMELIPERLRGETATFDIE--ANGKVYVEAGRRITARHIRQLTKDDITHIEVPVDY 290 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G + D VN +TGEI I A + L + + + I +L+ + +++ AYI +TL Sbjct: 291 IVGKVASHDYVNEDTGEIIIAANQEFSLEDLANLSQAGYKKIEVLFTNDLDHGAYISDTL 350 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 351 RADSTVDRLSALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGR 410 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + + DII +++ L+D+RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 411 DNDEGAGVLDETDIIEVMRKLIDIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 470 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 471 ERAVRERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 530 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FA+ N YGF+ETPY Sbjct: 531 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSAFAQCNEYGFLETPY 590 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG+VT+ V YLSA+EE IAQAN+ L E+G+F +EL+ R GE L PRE I Sbjct: 591 RRVVDGQVTDQVDYLSAIEEGTFVIAQANAVLTEEGTFADELIIARQKGESGLHPREHIQ 650 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA Sbjct: 651 YMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVD 710 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 711 SGVTAVAKRGGVVQSVDASRIVIKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTV 770 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 771 LPGEPVTRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 830 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 831 HIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 890 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 891 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 950 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R QW Sbjct: 951 QLKEAKKDITEEFQILEGGLLARVRTLLVAAGV-------------SEVKLDAMDRKQWL 997 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 998 EITLDDEAQQNQLEQLAEQYDELKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1057 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E H+G Sbjct: 1058 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHMG 1117 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE--KISDYDDDSVLRVAEQW 1200 A G+G KI ++ K ++ R+FL+KV G + I+ DD V + + Sbjct: 1118 LAAKGVGDKINQML---KEQQELHKFRNFLQKVYDLGETRQEVDIAALSDDEVRTLIKNL 1174 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TP+FDGA E +I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1175 RGGLPIATPIFDGAPEASIKELLKLVDLPESGQLKLFDGRTGDAFERPVTVGYMYMLKLN 1234 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1235 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1294 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1295 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDEE 1341 >gi|254672709|emb|CBA06638.1| DNA-directed RNA polymerase beta chain [Neisseria meningitidis alpha275] Length = 1392 Score = 1628 bits (4216), Expect = 0.0, Method: Composition-based stats. Identities = 698/1398 (49%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG +E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYGNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + S +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDISGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|241760439|ref|ZP_04758533.1| DNA-directed RNA polymerase, beta subunit [Neisseria flavescens SK114] gi|241319108|gb|EER55601.1| DNA-directed RNA polymerase, beta subunit [Neisseria flavescens SK114] Length = 1409 Score = 1628 bits (4216), Expect = 0.0, Method: Composition-based stats. Identities = 693/1398 (49%), Positives = 956/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 18 MSYSFTEKKRIRKSFAKRENVLDVPFLLATQIDSYAKFLQLENAFDQRTDDGLQAAFNSI 77 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 78 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 135 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 136 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 195 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 196 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 255 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 256 NGVQTDLIAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPEN 313 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L ++ +++I LY++ ++ YI +TL Sbjct: 314 LIGKALAVDLIDPETGEVLASANDEITEELLAKLDIHGVKEITTLYINELDQGGYISSTL 373 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D++ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 374 RTDETADQQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 433 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 434 QKLSEAQQNSWYGRLLNETLAGVAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 493 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 494 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 553 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 554 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 613 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD+DG+ Sbjct: 614 GLINSLSVYARTNDYGFLETPYRRVVDGKVTEEIDYLSAIEEGRYVIAQANADLDKDGNL 673 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 674 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 733 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+V+R + + GVD Sbjct: 734 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEATAGEVGVD 793 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 794 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 853 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 854 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 913 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 914 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 973 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ +D D+ I D + + R+ ++ GQ A GP Sbjct: 974 DVQVFTREGIQRDKRAQSIIDSELKRYRQDLGDQLRIFDNDAFDRIERMIVGQKANGGPM 1033 Query: 1001 GFKKSTVLSSDLISEY-PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ + W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1034 KLAKGSEITTEYLASLSSKHDWFDIRLADEDLAKQLELIKLSLQQKREEADELYEIKKKK 1093 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1094 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1153 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ K S LR FL K+ + Sbjct: 1154 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRML---KEQRKASELREFLNKLYNSS 1210 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ ++ +A + G ++PVFDGA E I ML +A E G Sbjct: 1211 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGF 1270 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1271 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1330 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1331 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1390 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1391 NVLVKEIRSLGLDIDLER 1408 >gi|218767181|ref|YP_002341693.1| DNA-directed RNA polymerase subunit beta [Neisseria meningitidis Z2491] gi|9910857|sp|P57009|RPOB_NEIMA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|121051189|emb|CAM07460.1| DNA-directed RNA polymerase beta chain [Neisseria meningitidis Z2491] gi|319411386|emb|CBY91797.1| DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) [Neisseria meningitidis WUE 2594] Length = 1392 Score = 1628 bits (4215), Expect = 0.0, Method: Composition-based stats. Identities = 695/1398 (49%), Positives = 958/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+V+R + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL ++ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNRLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|124268635|ref|YP_001022639.1| DNA-directed RNA polymerase subunit beta [Methylibium petroleiphilum PM1] gi|158512810|sp|A2SLG5|RPOB_METPP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|124261410|gb|ABM96404.1| DNA-directed RNA polymerase [Methylibium petroleiphilum PM1] Length = 1375 Score = 1628 bits (4215), Expect = 0.0, Method: Composition-based stats. Identities = 695/1380 (50%), Positives = 976/1380 (70%), Gaps = 19/1380 (1%) Query: 1 MAKG--VVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAA 58 MA+ + R+RK FGK ++ +P L+ +QK SY FL ++ P +R EGLQAA Sbjct: 1 MAQATPYSYTERKRIRKSFGKRENVLGVPYLLTMQKDSYVAFLQKDVPPQKRKPEGLQAA 60 Query: 59 FKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 F S FPI + +G ++++ + P FD +C R LTYA ++ L++I++D + T Sbjct: 61 FLSAFPIVSHNGFVEMKYIEFNMAKPAFDTRECQQRGLTYAAAVRAKLQMIIYDRETSTS 120 Query: 119 -AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 +K +K+IKEQ +YMG++PLMT G+F++ G +R++VSQLHRSPG+ F+HDKG+ SGK Sbjct: 121 QSKVVKEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGK 180 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIV 237 LL++ RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G++ E+IL+ F+ Sbjct: 181 LLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILANFFVFDN 240 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 + A D + G L D G ++E K++T+ ++L+ G F+ Sbjct: 241 FRLMDSGAQMEFVA-DRLRGEIARFDLTD-KAGAVIVEKDKRITARHTRALEASGTSFIS 298 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 + D L G +A+++V+ +TGEI +A D + + L+++ + I+DI LY + ++ AY Sbjct: 299 VPEDFLVGRVLAKNMVDADTGEIIAKANDELTDSLLKKLRTAGIKDIQCLYTNELDMGAY 358 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 I TL +D+ D A + IYR+MRPG+ T +++FN LF+ D YDLS VGR+K N Sbjct: 359 ISQTLASDETADELAARVAIYRMMRPGEPPTEDAVQALFNRLFYSEDTYDLSRVGRMKFN 418 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 R+ DT + + +DI+ ++KILV+LRNG+G +DDID+LGNRRVR VGE+ +NQYR Sbjct: 419 ARVGRDTAEGRMVLANDDILDVVKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQYRS 478 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL R+E+++KER+ + +++MP DLIN+KP+ +A+ EFF +SQLSQ + N LS ITH Sbjct: 479 GLARIEKAVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITH 538 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A++N YGF Sbjct: 539 KRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGF 598 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 +ETPYR+V D KVT+ + YLSA+EE IAQAN+ LD+DG +ELV R +GE +L Sbjct: 599 LETPYRRVIDSKVTDQIDYLSAIEEGKYVIAQANAGLDKDGKLIDELVSARESGESVLTS 658 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 E+I ++D +P Q+VS+AASL+PFLE+DD+NR LMG NMQRQAVP+L+ E FVGTG+E Sbjct: 659 PERIQYMDVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKAFVGTGVER 718 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 V A SG + AKR G+V+ +D RIVIR + + GVDIY L+K+QRSNQNT ++ Sbjct: 719 VSAVDSGTVVTAKRGGVVDYIDTNRIVIRVNDAETVAGEVGVDIYNLIKYQRSNQNTNIH 778 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 QRP+V+ GD+V D+IADG STD+G+LALG+NMLVAFMPW+GYNFEDS+LISER+V++D Sbjct: 779 QRPIVQRGDQVGAGDVIADGASTDIGELALGQNMLVAFMPWNGYNFEDSILISERVVADD 838 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 +TSIHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GI+ +GAEVNPGD+LVGK Sbjct: 839 RYTSIHIEELVVMARDTKLGSEEITRDIPNLSEQQLGRLDESGIVYIGAEVNPGDVLVGK 898 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G +GTV+DV++F R GI +++R+ Sbjct: 899 VTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGTNGTVIDVQVFTREGIQRDKRAQ 958 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 + ++++ D +D+ I++ + + R+ ++L G+ A GP K T + ++ Sbjct: 959 QIIDDELKRFRLDLNDQLRIVEADAFDRIEKLLAGKTANGGPNKLAKGTPIDKAYLASVD 1018 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 + W+ D+ + +ES+K E ++ + F+ K +K+ GD++P GVL++VKV+ Sbjct: 1019 KYHWFDIRPADDDIANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVY 1078 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMNVGQ+ Sbjct: 1079 LAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVL 1138 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRV 1196 E HLGWA G+G++I L+ + I+ +R FL+++ +G +E ++ D + + Sbjct: 1139 EVHLGWAAKGIGQRIGDLL---QQEAKIADVRKFLDELYNKSGGKSEGLNGLSDAEITEM 1195 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE----------SGQSILYDGLTGEPFD 1246 A GVP +TPVFDGA EE I +M+ +A DE Q+ L+DG TG+ F+ Sbjct: 1196 ATNLAQGVPFATPVFDGATEEEIRAMMHLAYPDEIAAAKGLNATRTQATLHDGRTGDAFE 1255 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 RPVTVGY+++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1256 RPVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1315 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 A+YVLQEMLT+KSDDV GRT+VYESIV G E G PESFNVLVKE+++LG+ I+LE + Sbjct: 1316 ASYVLQEMLTVKSDDVNGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGIDIELERN 1375 >gi|269214076|ref|ZP_06158337.1| DNA-directed RNA polymerase, beta subunit [Neisseria cinerea ATCC 14685] gi|269144581|gb|EEZ70999.1| DNA-directed RNA polymerase, beta subunit [Neisseria cinerea ATCC 14685] Length = 1425 Score = 1628 bits (4215), Expect = 0.0, Method: Composition-based stats. Identities = 694/1398 (49%), Positives = 956/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 34 MSYSFTEKKRIRKSFAKRENVLDVPFLLATQIDSYAKFLQLENAFDQRTDDGLQAAFNSI 93 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 94 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 151 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 152 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 211 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 212 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 271 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A+ L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 272 NGVQTDLIASRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 329 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L ++ +++I LY++ ++ YI +TL Sbjct: 330 LIGKALAADLIDPETGEVLASANDEITEELLAKLDIHGVKEITTLYINELDQGGYISSTL 389 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D++ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 390 RTDETADQQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 449 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 450 QKLSEAQQNSWYGRLLNETLAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 509 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 510 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 569 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 570 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 629 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD+DG+ Sbjct: 630 GLINSLSVYARTNDYGFLETPYRRVVDGKVTEEIDYLSAIEEGRYVIAQANADLDKDGNL 689 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 690 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 749 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+V+R + + GVD Sbjct: 750 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEATAGEVGVD 809 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 810 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 869 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 870 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 929 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 930 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 989 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ +D D+ I D + + R+ ++ GQ A GP Sbjct: 990 DVQVFTREGIQRDKRAQSIIDSELKRYRQDLGDQLRIFDNDAFDRIERMIVGQKANGGPM 1049 Query: 1001 GFKKSTVLSSDLISEY-PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ + W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1050 KLAKGSEITTEYLASLSSKHDWFDIRLADEDLAKQLELIKLSLQQKREEADELYEIKKKK 1109 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1110 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1169 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ K S LR FL K+ Sbjct: 1170 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRML---KEQRKASELREFLNKLYNGS 1226 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ ++ +A + G ++PVFDGA E I ML +A E G Sbjct: 1227 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGF 1286 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1287 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1346 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRTR+YE+IV G + G PESF Sbjct: 1347 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTRMYENIVKGEHKIDAGMPESF 1406 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1407 NVLVKEIRSLGLDIDLER 1424 >gi|332037824|gb|EGI74274.1| DNA-directed RNA polymerase beta subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 1341 Score = 1627 bits (4214), Expect = 0.0, Method: Composition-based stats. Identities = 704/1364 (51%), Positives = 963/1364 (70%), Gaps = 23/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ Q S+ FL PD + GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLESFKKFL----VPDADGDHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL+V D + ++ Sbjct: 57 FPIKSYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVVMDKEAPG---TV 113 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT GTFVI G +R++VSQLHRSPG+ FD+D+G+ SGK+LY Sbjct: 114 KDIKEQEVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNA 173 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD ++VRIDRRRK+P + L AL SEEIL F+ + Sbjct: 174 RVIPYRGSWLDFEFDAKDNLYVRIDRRRKLPASIILRALEYSSEEILDMFFDNTTFEVTN 233 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L + L G + + + GE +ESG+++T+ +KS+++KG+K L + + Sbjct: 234 GKVLMELVPSRL-RGETAAFDI-KSEDGEVFVESGRRVTARHIKSIEKKGIKQLEVPHEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA++ V+ TGE+ A D + + + E+ + I LY++ V++ AY+ NTL Sbjct: 292 IIGRIVAKNYVDESTGEVIANANDELTLELMAELVKAGHTKIDTLYINEVDSGAYMSNTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + R +AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N R+ Sbjct: 352 NIDSSSSRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSTVGRMKFNSRVGY 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 DT + KEDI++++K+L+ +RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DTDTGPGTLSKEDIVSVMKVLIAIRNGQGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+++AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT++V YLSA+EE IAQANS+L E F +EL+ CR GE + R Sbjct: 592 RKVVDGVVTDEVDYLSAIEEGQFVIAQANSNLTETNEFVDELIPCRHKGESTFMGRMDQQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+QV+S+AA+LIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +AK Sbjct: 652 YMDVSPQQVISVAAALIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGIELTLAKD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG IVAKR G V DA RIV+ E + P +G+DIY L K+ RSNQNTC+NQ+P Sbjct: 712 SGVTIVAKRGGEVMYADASRIVVNVHEEERIPGEAGIDIYNLTKYTRSNQNTCINQKPTC 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+N+ VAFMPW+GYNFEDS+L+SER+V ED T+I Sbjct: 772 MVGEPVTRGDVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVEEDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E + +ARDTKLGPEEIT DIPNV E L +DE G++ + AEV GDILVGK+TPKG Sbjct: 832 HIQELQCVARDTKLGPEEITADIPNVGESALGKLDESGVVYISAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V+GTV+DV++F R G++K++R++ VE Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEDM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D ++E IL+ + R ++L D ++ + Sbjct: 952 QLREAKKDFNEEFRILEAGVLDRARKLLIAAG-------------FDEDKLASLNAEKVL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ +E Q +E L QY+ K+ + +F+NK KI GDD+ PGVL++VKV++A+KR Sbjct: 999 TQSLAEEDKQAELEQLAAQYDELKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ G VDIVLNPLGVPSRMN+GQI ETH+G Sbjct: 1059 RIQPGDKMAGRHGNKGVISTIVPVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G++I+ ++ + + ++ ++ G I+ + DD + R+AE K Sbjct: 1119 LAARGIGERIEEMMKEQRELHELREFIKQAYEI-GESRQVVDIASFTDDEIRRLAENLKG 1177 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E I ML + SGQ LYDG TG+ F+R VTVGY+YMLKLNH+ Sbjct: 1178 GLPIATPAFDGAKESEIKDMLELGGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHL 1237 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1238 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1297 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE + Sbjct: 1298 NGRTKMYKNIVDGNHKMEPGMPESFNVLLKEIRSLGINIELEEN 1341 >gi|304388932|ref|ZP_07370979.1| DNA-directed RNA polymerase subunit beta [Neisseria meningitidis ATCC 13091] gi|304337066|gb|EFM03253.1| DNA-directed RNA polymerase subunit beta [Neisseria meningitidis ATCC 13091] Length = 1392 Score = 1627 bits (4214), Expect = 0.0, Method: Composition-based stats. Identities = 697/1398 (49%), Positives = 955/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+V+R + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLSDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ K S LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRML---KEQRKASELREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|90413408|ref|ZP_01221401.1| DNA-directed RNA polymerase beta subunit [Photobacterium profundum 3TCK] gi|90325650|gb|EAS42119.1| DNA-directed RNA polymerase beta subunit [Photobacterium profundum 3TCK] Length = 1341 Score = 1627 bits (4214), Expect = 0.0, Method: Composition-based stats. Identities = 696/1366 (50%), Positives = 960/1366 (70%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D P L+ +Q S+ F+ + + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPRVLDAPYLLSIQLDSFQKFIEQD----PEGHYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL+++D D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVMYDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTNNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+ + L AL +E+IL F+ K+ + +G Sbjct: 175 RVIPYRGSWLDFEFDPKDNVFVRIDRRRKLAASVILRALDYTTEQILDMFFDKVSFEVQG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G S + G+ +E G+++T+ ++ L + GV + + + Sbjct: 235 KSLVMELVPERL-RGETASFDIE--ANGKVYVEQGRRITARHIRQLGKDGVDQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G + D VN ETGE+ A + ++L + + + I +L+ + ++ Y+ TL Sbjct: 292 IVGKISSRDYVNEETGELIAAANQELSLETLALLSQAGHKSIEVLFTNDLDYGPYMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE +FN LFF D+YDLS VGR+K N L Sbjct: 352 RVDSTTDRLSALVEIYRMMRPGEPPTREAAEQLFNSLFFSEDRYDLSAVGRMKFNSSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + DII ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EETTGSGILDHSDIIEVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N+YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSVYARCNSYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+ + YLSA+EE IAQAN++L+ DGSF++EL+ R G+ L PR+ + Sbjct: 592 RKVVDGKVTDQIDYLSAIEEGQYVIAQANAALETDGSFSDELITARQKGDSGLHPRDHVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERSVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGQVQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+N+ +AFMPW+GYNFEDS+L+SER+V +D T+I Sbjct: 772 MPGEPVSRGDVLADGPSTDLGELALGQNIRIAFMPWNGYNFEDSILVSERVVQQDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + I+ R + + Sbjct: 952 QLKEAKKDITEEFQILEGGLLARVRTLLLSIG-------------YSEEKIASMDRERLF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE +Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ALTLDDESLQNQLEQLAEQYDELKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G V+IVLNPLGVPSRMN+GQI ETH+G Sbjct: 1059 RIQPGDKMAGRHGNKGVISKICPVEDMPYDEKGQTVEIVLNPLGVPSRMNIGQILETHMG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G K+ ++ K ++ R+FL+KV G T I+ D V + + Sbjct: 1119 LAAKGIGDKLNEML---KQQQELHKFRNFLQKVYDLGDTRQTVDIAALSDAQVHTLIQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E +I +L++ DL ESGQ ++DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RDGLPIATPVFDGAPEASIKELLKLGDLPESGQLKMFDGRTGDMFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|319775564|ref|YP_004138052.1| RNA polymerase subunit beta [Haemophilus influenzae F3047] gi|317450155|emb|CBY86369.1| RNA polymerase, beta subunit [Haemophilus influenzae F3047] Length = 1342 Score = 1627 bits (4214), Expect = 0.0, Method: Composition-based stats. Identities = 710/1367 (51%), Positives = 971/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G ++ R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKENEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ +K+L++ + + + S+ Sbjct: 235 DKLLMTLVPERL-RGETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D V+ E+GEI A I ++L ++ + I L+ + ++ YI TL Sbjct: 292 ILGKVASKDYVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL +IYR+MRPG+ T +E +FN LFF +++YDLSTVGR+K N L Sbjct: 352 RVDPTYDKTSALYEIYRMMRPGEPPTPESSEVLFNNLFFSAERYDLSTVGRMKFNRSLAF 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDIIA+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGAGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLS ++E N IAQANS+LDE+ FT+ V R GE L E I Sbjct: 592 RKVVDGQVTEEIEYLSVIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L A + + R++W Sbjct: 952 MQLREAKKDLTEELEILEAGLFARVRHLLISSGA-------------DAAQLDNLDRAKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTIADEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I +++ K ++ LR +++K G GS +S + D+ VLR+AE Sbjct: 1119 GLAAKGIGDQINAML---KQKQEVEKLRGYIQKAYDLGNGSQKVDLSTFTDEEVLRLAEN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+PV+TPVFDGADE I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV+GN + GTPESFNV++KE+++LGL+I+L+ Sbjct: 1296 DDVNGRTKMYKNIVSGNQHMDPGTPESFNVIMKEIRSLGLNIELDEE 1342 >gi|261391669|emb|CAX49117.1| DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) [Neisseria meningitidis 8013] Length = 1392 Score = 1627 bits (4214), Expect = 0.0, Method: Composition-based stats. Identities = 697/1398 (49%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG +E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYGNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|78099464|gb|ABB20868.1| RNA polymerase subunit B [Acinetobacter tjernbergiae] Length = 1362 Score = 1627 bits (4214), Expect = 0.0, Method: Composition-based stats. Identities = 709/1374 (51%), Positives = 969/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P +++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPHVMEAPYLLSIQVDSYRTFLQGGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L ALG + +IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVILRALGYANAQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L D + G + D D G+ ++E GK++ ++ ++ + L + + Sbjct: 237 GSYQIDLVP-DRLRGEMAQFDIADND-GKVIVEQGKRINVRHVRQMEAANLAKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + I A ++ + + ++ ++ IL+ + ++ ++I ++L Sbjct: 295 LYERITAEDITLKDGDVI--PANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFIADSL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTSGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHDDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S +D+DG+ TEE+ R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSGVDKDGNLTEEMASVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G +E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIADRGGAIEYVDASRIVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS+D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLTGQESNGG-GSTKRGDKLSADVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPTDEAIAERLTQIQVFLKEKSYEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E++ D V Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VIELREFLDKIYNKVGGEQEELDSLTDAEV 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALSGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|325127126|gb|EGC50080.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis N1568] Length = 1392 Score = 1627 bits (4214), Expect = 0.0, Method: Composition-based stats. Identities = 697/1398 (49%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG +E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYGNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|33152866|ref|NP_874219.1| DNA-directed RNA polymerase subunit beta [Haemophilus ducreyi 35000HP] gi|41017666|sp|Q7VKL7|RPOB_HAEDU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|33149091|gb|AAP96608.1| RNA polymerase beta subunit [Haemophilus ducreyi 35000HP] Length = 1342 Score = 1627 bits (4214), Expect = 0.0, Method: Composition-based stats. Identities = 701/1367 (51%), Positives = 972/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++++P L+ +Q SY+ F+ ++ +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSYEKFIHRDLD----GQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G+ L++VSYE P FDV +C R TYA PL++ LRL+ FD + G ++ Sbjct: 57 FPIVSNNGSTELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVAFDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEIL+ F+ K+++ + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILTMFFEKVLFEIQD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +++L++ G+ + + + Sbjct: 235 NKLLMILVPERL-RGETAAFDIE--ANGKIYVERGRRITARHIRTLEKDGITQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ TGE+ A I L ++ + +++ +L+ + +++ YI TL Sbjct: 292 IVGKVAAKDYVDLSTGELVCPANTEISMDMLAKLSQAGYKELEVLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ +FF +D+YDLS VGR+K N LN+ Sbjct: 352 RVDSTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSLNI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DI ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGVGTGILTNDDITGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D + PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 KV +G+VT ++ YLSA+EE N +AQANS+LDE FT+ V CR GE L E I Sbjct: 592 HKVVNGQVTEEIEYLSAIEEGNYVVAQANSNLDEHFRFTDTYVTCRGEHGESGLYKPEDI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG AIVAKR GI+++VDA RIV++ E + P +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAIVAKRGGIIQRVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VNLGEPVARGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R ++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDSVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L + +S ++ R +W Sbjct: 952 MQLREAKKDLTEELEILEAGLFTRVRNLLI-------------ESGVSEVNLNNVAREKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE Q +E L Q+E E + + K KI GDD+ PGVL+VVKV++A++ Sbjct: 999 LEQTLDDEAKQNQLEQLAEQHEELCKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVR 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGEPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K +++ LR +++K G GS +S + D+ V+R+A+ Sbjct: 1119 GLAARGIGDQINAMI---KQQQEVTKLREYIQKAYDLGHGSQVVDLSTFTDEEVMRLAQN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E I +L + L SGQ L+DG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPLATPVFDGAHEAEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G E G PESFNVL+KE++ALG+ ++L+ Sbjct: 1296 DDVNGRTKMYKNIVDGTHQMEPGMPESFNVLLKEIRALGIDMELDED 1342 >gi|261854943|ref|YP_003262226.1| DNA-directed RNA polymerase subunit beta [Halothiobacillus neapolitanus c2] gi|261835412|gb|ACX95179.1| DNA-directed RNA polymerase, beta subunit [Halothiobacillus neapolitanus c2] Length = 1388 Score = 1627 bits (4214), Expect = 0.0, Method: Composition-based stats. Identities = 693/1392 (49%), Positives = 952/1392 (68%), Gaps = 30/1392 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FG +I+ +P L+ Q SY FL + R N GL AA SV Sbjct: 1 MSYSFTEKKRIRKEFGHRADILPVPYLLATQVESYKSFLQSGVPAKGRTNAGLHAALSSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A + +V Y F P FDV +C R L+Y PL++ +RL+++D D G+K + Sbjct: 61 FPIRSHSGNAEIAYVDYYFGEPAFDVRECQIRGLSYGAPLRVKMRLVIYDRDAPAGSKVV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ +Y+G++PLMT+ GTFVI G +R++VSQLHRSPG+ FDHDKG+ S S K+L++ Sbjct: 121 KDIREQDVYLGEIPLMTESGTFVINGTERVIVSQLHRSPGVFFDHDKGKTSSSKKILFSA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ RIDRRRK+P + L ALG ++ +L F+ + Sbjct: 181 RIIPYRGSWLDFEFDQKDILYARIDRRRKIPASIILRALGYTNQNMLDIFFDHDEFHIDK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D AD + G + + GE +I++GK++T+ ++ L V L + D Sbjct: 241 DGGLALTLVADRLKGTDAAFDIDI--NGENLIKTGKRITARHVRELVAAKVTSLPVPVDF 298 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A D+++ TGE+ + + + + + ++ + I LY + V+ ++ TL Sbjct: 299 VVGRVLASDVIDTSTGEVLAQGNEELTTELVAKLAKAGITQFKTLYFNDVDRGPFMSLTL 358 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +A+++IY++MRPG+ T AE++F+ LFF D+YDLS VGR+K N R+ Sbjct: 359 RADPSTTPLEAMVEIYKMMRPGEPPTKDSAEALFHGLFFTEDRYDLSEVGRMKFNRRIER 418 Query: 423 DTPDDVRHIRKEDIIAI-------------------------IKILVDLRNGKGTIDDID 457 + + +K L+D+RNG G DDID Sbjct: 419 EGDVGPGVLYDGKYFTTRAAQGDEAAKQLLKEQGGVSDILDVMKELIDIRNGNGKTDDID 478 Query: 458 NLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFF 517 +LGNRR+RSVGEM +N +R+GL+R+ER++KER++ + + + PQDLINAKPV +A+ EFF Sbjct: 479 HLGNRRIRSVGEMTENVFRIGLVRVERAVKERLTQAESEGLTPQDLINAKPVAAAIKEFF 538 Query: 518 CSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEG 577 SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG Sbjct: 539 GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEG 598 Query: 578 HNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDED 637 NIGL++SL ++AR N YGF+ETPYR V DG V+ +V +LSA EEE IAQAN+ LD++ Sbjct: 599 PNIGLINSLATYARTNGYGFLETPYRTVKDGVVSKEVDWLSAYEEEKFTIAQANAPLDDN 658 Query: 638 GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQ 697 G L+ R AGE +L E+I ++D SPKQ+VSIAAS+IPFLE+DD+NR LMG NMQ Sbjct: 659 GVLQGNLISVRRAGEFMLASPEEIQYMDVSPKQIVSIAASIIPFLEHDDANRALMGSNMQ 718 Query: 698 RQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTS 757 RQAVP L+A+ P VGTGME VVA SG+ +VA+R G+V++VDA R+V+R + Sbjct: 719 RQAVPTLRADKPLVGTGMERVVATDSGSCVVARRGGVVDRVDAARVVVRVNAEEASQGDV 778 Query: 758 GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMP 817 GVDIY L K+ RSNQNTC+NQ PLVK GD + + D++ADGPS D+G+LALG+N+L AFMP Sbjct: 779 GVDIYNLTKYTRSNQNTCINQTPLVKAGDVIAKGDVLADGPSVDMGELALGQNILCAFMP 838 Query: 818 WHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNID 877 W+GYNFEDS+L+SER+V ED T+IH+EE +ARDTKLG EEIT DIPNV+E L +D Sbjct: 839 WNGYNFEDSILLSERVVREDRLTTIHVEELNCIARDTKLGAEEITADIPNVAESLLNKLD 898 Query: 878 ECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSG 937 G++ VGAEV PGDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP G+ G Sbjct: 899 AAGVVHVGAEVRPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPPGMEG 958 Query: 938 TVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 TV+DVR+F R GI+K+ R+ ++E +E + +D D I++ +I +R+ +L Q AV Sbjct: 959 TVIDVRVFTRDGIEKDSRARAIEEADLEAVRKDLKDRMRIIEGDILARVKSVLVNQVAVG 1018 Query: 998 GPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKI 1057 GP G K + +++ + + S+W + V+ E+ + +E Q ++ ++ RF++K Sbjct: 1019 GP-GVKAGSKITAAQLEKIEPSKWLEIRVEGEEAAQAMEEYIAQLAQAQVDIDKRFEDKK 1077 Query: 1058 EKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTP 1117 +KIQ GDD+ PGVL++VKV+VA+KR IQ GDK+AGRHGNKG+VS I+P EDMP++++G P Sbjct: 1078 KKIQQGDDLAPGVLKMVKVYVAVKRRIQPGDKLAGRHGNKGVVSMIVPEEDMPYMENGQP 1137 Query: 1118 VDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG 1177 VDI LNPLGVPSRMN+GQI ETHLG+A GLG KI+ ++ +A I LR+FL+KV Sbjct: 1138 VDICLNPLGVPSRMNIGQILETHLGFAARGLGVKIEEMLKLERAKALI-ELRAFLDKVYN 1196 Query: 1178 -TGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 + DD ++ +A K GVP++TPVFDGA E+ I ML +A L SGQ L Sbjct: 1197 YKSDKPVDLDALSDDELIELARNLKKGVPMATPVFDGAVEDEIKYMLELAGLPTSGQVQL 1256 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG +GEPF+R TVGY+YMLKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1257 YDGRSGEPFERTTTVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1316 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQEMLT+KSDDV GR ++Y++IV G+ + G PESFNVL+KE+++ Sbjct: 1317 MEVWALEAYGAAYTLQEMLTVKSDDVNGRNKMYKNIVDGDLKMDAGMPESFNVLLKEIRS 1376 Query: 1357 LGLSIDLENSRT 1368 L ++++LE + Sbjct: 1377 LAINVELEQGKE 1388 >gi|91791532|ref|YP_561183.1| DNA-directed RNA polymerase, beta subunit [Shewanella denitrificans OS217] gi|123166591|sp|Q12SW6|RPOB_SHEDO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|91713534|gb|ABE53460.1| DNA-directed RNA polymerase, beta subunit [Shewanella denitrificans OS217] Length = 1343 Score = 1627 bits (4213), Expect = 0.0, Method: Composition-based stats. Identities = 696/1364 (51%), Positives = 960/1364 (70%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D G +AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKF----TDQDPTGERGFEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR+++FD + G ++ Sbjct: 57 FPIKSFSGYSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLFDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +++IL F+ +I + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATIMLRALEYSTQDILDLFFERIQFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L D + G S + D G ++E+G+++T+ +K L++ L + D Sbjct: 235 DSLVMALVP-DRLRGETASYDIKAAD-GSVLVEAGRRITARHIKQLEQSNTTELEVPVDY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y A+D ++ +TGE+ + A + I + L ++ + I++I L+++ +++ AYI +TL Sbjct: 293 IVGKYAAQDYIDEDTGEVLVSANNEISLEDLAKLSIAGIKEIDTLFINDLDHGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL + Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLEI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + K+DI+ ++K ++++RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 AEDEGNGVLSKDDIVCVMKKIIEIRNGYDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +G +T++V YLSA+EE IAQAN +D G EE + CR GE + I Sbjct: 593 RKVVEGVITDEVEYLSAIEEGRYVIAQANIEVDSTGRMVEEQIACRHKGESTFMRAADIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVVAKRGGVVDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 FVGEPVVRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRALEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 + +D +E IL+ + SR +L S ++E PR Sbjct: 953 HVAQARKDLGEEFKILEEGVLSRARNLLLSAG-------------YSEAKLAELPRKDVL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q+E K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 IQVIDDEAKQTELEQLAEQHEELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQ+ E H+G Sbjct: 1060 TIQPGDKMAGRHGNKGVISKICPVEDMPYDEEGNPVDIVLNPLGVPSRMNIGQVLEVHMG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + ++ + ++ I + DD V+R+A K Sbjct: 1120 AAAKGIGNKITAMLEEQREIAELRGYIKQVYELGDDVLQRVDIDSFSDDEVVRLATHLKG 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E+ I ML +A L ESGQ L DG TG F+R VTVGY+YMLKLNH+ Sbjct: 1180 GIPIATPAFDGAKEKEIKQMLALAGLPESGQLTLCDGRTGNEFERKVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1300 NGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQE 1343 >gi|319791335|ref|YP_004152975.1| DNA-directed RNA polymerase, beta subunit [Variovorax paradoxus EPS] gi|315593798|gb|ADU34864.1| DNA-directed RNA polymerase, beta subunit [Variovorax paradoxus EPS] Length = 1374 Score = 1627 bits (4213), Expect = 0.0, Method: Composition-based stats. Identities = 701/1379 (50%), Positives = 969/1379 (70%), Gaps = 18/1379 (1%) Query: 1 MAKG--VVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAA 58 MA+ + R+RK FG +++IP L+++QK +Y FL IAP +R EGLQAA Sbjct: 1 MAQSSAYSYTERKRIRKSFGNRDSVVEIPYLLQMQKDAYTAFLQAGIAPKQRTVEGLQAA 60 Query: 59 FKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG 118 F + FPI + +G ++F+ Y P FDV +C R LT+A ++ ++LI++D + T Sbjct: 61 FDAAFPIVSHNGFVEMKFLEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTS 120 Query: 119 -AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 +K +K++KEQ +YMG++PLMT+ G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGK Sbjct: 121 QSKVVKEVKEQEVYMGEVPLMTEKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGK 180 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIV 237 LL++ R+IP +G W+D EFD KD+++ R+DRRRK+PVT L A+G++ E IL+ F+ Sbjct: 181 LLFSARVIPYRGSWLDFEFDPKDMLYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDN 240 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 + + L G + D +G+ V+ K++T+ + L++ G + Sbjct: 241 FRLMDSGAQMEFVSERL-RGEVARFDITD-KSGKVVVAKDKRVTARHTRELEQSGTTHIS 298 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 + D L G +A +IV+ ++GEI +A D + E L+++ + ++DI ++Y + ++ AY Sbjct: 299 VPEDFLVGRVIARNIVDADSGEILAKANDELTEALLKKLRTAGVQDIQVIYTNELDQGAY 358 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 I TL D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N Sbjct: 359 ISQTLRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFN 418 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 ++ D + EDI+A++KILVDLRNG G +DDID+LGNRRVR VGE+ +NQYR Sbjct: 419 AKVGRDESTGPMVLTNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRT 478 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL R+E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N LS ITH Sbjct: 479 GLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITH 538 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGF Sbjct: 539 KRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGF 598 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 IETPYR+V D KVTN++ YLSA+EE IAQAN++LD+DG T +LV R AGE ILV Sbjct: 599 IETPYRRVVDSKVTNEIDYLSAIEEGKYVIAQANAALDKDGVLTGDLVSAREAGESILVG 658 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 E+I ++D SP Q+VS+AASL+PFLE+DD+NR LMG NMQRQAVP+L+ E P VGTG+E Sbjct: 659 AERIQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPMVGTGIER 718 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 V A SG + A R GIV+ VDA R+V+R + + GVDIY L+K+QRSNQNT ++ Sbjct: 719 VSAVDSGTVVTASRGGIVDYVDATRVVVRVNDAEAAAGEVGVDIYNLIKYQRSNQNTNIH 778 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 QRP+VK GD++ + D+IADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V+ED Sbjct: 779 QRPIVKRGDKIAKGDVIADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAED 838 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 +TSIHIEE VMARDTKLG EEITRDIPN++E+ L +DE GII VGAEV PGD LVGK Sbjct: 839 RYTSIHIEELVVMARDTKLGAEEITRDIPNLAEQQLNRLDESGIIYVGAEVQPGDTLVGK 898 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G GTV+DV++F R GI +++R+ Sbjct: 899 VTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGITRDKRAQ 958 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 + ++++ D +D+ I++ + + R+ ++L G+ A GP K T L +S Sbjct: 959 QIIDDELKRFRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPNKLAKGTKLDKAYLSSVE 1018 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 + W+ +++V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV+ Sbjct: 1019 KFHWFDIRPAEDEVATQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVY 1078 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR +Q GDKMAGRHGNKG+VS+I+P EDMP + DGTP DI LNPLGVPSRMNVGQ+ Sbjct: 1079 LAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPCDICLNPLGVPSRMNVGQVL 1138 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 E HLGWA G+G++I ++ + ++ +R F+E++ E +S D VL +A Sbjct: 1139 EVHLGWAGKGIGQRIGDML---QQEAKVAEVRKFMEQLYNGSGRPEDLSQLSDTDVLAMA 1195 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADL----------DESGQSILYDGLTGEPFDR 1247 +SG +TPVFDGA EE I ML++A D Q+ LYDG +G+ F+R Sbjct: 1196 ANLQSGATFATPVFDGASEEEIRGMLKLAYPDDIAKLKGLTDTRTQAYLYDGRSGDQFER 1255 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 PVTVGY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1256 PVTVGYMHFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1315 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AYVLQEMLT+KSDDV GRT+VYESIV G + E G PESFNVLVKE+++LGL I+LE S Sbjct: 1316 AYVLQEMLTVKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGLDIELERS 1374 >gi|290082953|gb|ADD22985.1| RNA polymerase subunit B [Acinetobacter sp. BM-8] Length = 1362 Score = 1627 bits (4212), Expect = 0.0, Method: Composition-based stats. Identities = 712/1374 (51%), Positives = 975/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T L AL +E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVILRALNFSNEQILNMFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDIADSD-GKAIVEQGKRINARHVRQMEASGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L +AED+V + GE A V++ + + ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYERIIAEDVVLRD-GETIA-ANTVLNHEIMVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +DR++AL++IY+VMRPG+ T A+++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADLTRDREEALVEIYKVMRPGEPPTKEAADNLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DI+ ++K LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGNDQKSREVECILSNDDIVDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+ + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLGQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANH 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA++++D D +FTEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADATVDADNNFTEEFVSVRHQGESV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RIPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G++E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGMIEFVDASRVVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R GI+K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGIEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L Q + G K+ L+ DL+S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKDQQSNGG-GNTKRGDKLTEDLLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 HLALVDLLEIQPNDEAIAERLTQIQVFLKEKSFEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP G PVD+VLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDIHGVPVDVVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ K I+ LR FL+K+ G E++ DD + Sbjct: 1132 QILETHLGLAAKGLGEQIDKMV---KQQRTIAELREFLDKIYNKVGGEQEQLDTLTDDEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 +++A ++GVP++TPVFDGA+E I +L +A+L SGQ++LYDG TGE FDRPVTVGY Sbjct: 1189 MKLAGNLRAGVPLATPVFDGAEEGQIKELLELAELPRSGQTVLYDGRTGERFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|119468175|ref|ZP_01611301.1| DNA-directed RNA polymerase beta chain [Alteromonadales bacterium TW-7] gi|119448168|gb|EAW29432.1| DNA-directed RNA polymerase beta chain [Alteromonadales bacterium TW-7] Length = 1341 Score = 1627 bits (4212), Expect = 0.0, Method: Composition-based stats. Identities = 700/1364 (51%), Positives = 965/1364 (70%), Gaps = 23/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ Q S+ FL PD + GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLESFKKFL----VPDADGDHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL+V D + ++ Sbjct: 57 FPIKSYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVVMDKEAPG---TV 113 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT GTFVI G +R++VSQLHRSPG+ FD+D+G+ SGK+LY Sbjct: 114 KDIKEQEVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNA 173 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD ++VRIDRRRK+P + L AL SEEIL F+ + Sbjct: 174 RVIPYRGSWLDFEFDAKDNLYVRIDRRRKLPASIILRALEYSSEEILDIFFDTTAFEVAD 233 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L + L G + + D GE ++ESG+++T+ +KS+++KG+ L + + Sbjct: 234 GKVLMELVPSRL-RGETAAFDIKGED-GEVLVESGRRVTARHIKSIEKKGITQLEVPHEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++++ V+ TGE+ A D + + + E+ + I LY++ V++ AY+ NTL Sbjct: 292 IIGRIISKNYVDESTGEVIANANDELTLELMAELVKAGHTTIDTLYINEVDSGAYMSNTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +R +AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N R+ Sbjct: 352 NIDSSSNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSTVGRMKFNSRVGY 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D+ + KEDI++++K+L+ +RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DSDTGPGTLSKEDIVSVMKVLIAIRNGQGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+++AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT++V YLSA+EE IAQANS+L E F +EL+ CR GE + R Sbjct: 592 RKVVDGVVTDEVDYLSAIEEGQFVIAQANSNLTETNEFVDELIPCRHKGESTFMGRMDQQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+QV+S+AA+LIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +AK Sbjct: 652 YMDVSPQQVISVAAALIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGIELTLAKD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG IVAKR G V DA RIV+ E + P +G+DIY L K+ RSNQNTC+NQ+P Sbjct: 712 SGVTIVAKRGGEVMYADASRIVVNVHEEERIPGEAGIDIYNLTKYTRSNQNTCINQKPTC 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+N+ VAFMPW+GYNFEDS+L+SER+V ED T+I Sbjct: 772 MVGEPVTRGDVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVEEDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E + +ARDTKLGPEEIT DIPNV E L +DE G++ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELQCVARDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V+GTV+DV++F R G++K++R++ VE Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEDM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D ++E IL+ + R ++L + + + Sbjct: 952 QLREAKKDFNEEFRILEAGVLERARKLLVAAG-------------FDENNLVSLNAEKLL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ +E Q +E L QY+ K+ + +F+NK KI GDD+ PGVL++VKV++A+KR Sbjct: 999 TQSLAEEDKQAELEQLAAQYDELKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ G VDIVLNPLGVPSRMN+GQI ETH+G Sbjct: 1059 RIQPGDKMAGRHGNKGVISTIVPVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G++++ ++ + + ++ ++ G I+ + DD + R+AE K Sbjct: 1119 LAARGIGERLEEMMKEQRELHELREFIKQAYEI-GESRQVVDIASFSDDEIRRLAENLKG 1177 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E+ I ML + SGQ LYDG TG+ F+R VTVGY+YMLKLNH+ Sbjct: 1178 GLPIATPAFDGAKEDEIKDMLELGGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHL 1237 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1238 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1297 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE + Sbjct: 1298 NGRTKMYKNIVDGNHKMEPGMPESFNVLLKEIRSLGINIELEEN 1341 >gi|325137190|gb|EGC59785.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis M0579] Length = 1392 Score = 1627 bits (4212), Expect = 0.0, Method: Composition-based stats. Identities = 697/1398 (49%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG +E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYGNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTKEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|89075377|ref|ZP_01161799.1| DNA-directed RNA polymerase beta subunit [Photobacterium sp. SKA34] gi|89048926|gb|EAR54495.1| DNA-directed RNA polymerase beta subunit [Photobacterium sp. SKA34] Length = 1341 Score = 1627 bits (4212), Expect = 0.0, Method: Composition-based stats. Identities = 698/1366 (51%), Positives = 959/1366 (70%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q S+ F+ + + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDAPYLLSIQLDSFQKFIEQD----PEGHYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL+++D D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVMYDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L AL +E+IL F+ KI + +G Sbjct: 175 RVIPYRGSWLDFEFDPKDSVFVRIDRRRKLPASIILRALNYTTEQILDMFFDKINFEVQG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S ++ G +E G+++T+ ++ L + G+ + + + Sbjct: 235 KSLVMELVP-DRLRGETASFNIE--ANGTVYVEQGRRITARHIRQLGKDGIDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G + D +N ETGE+ + A + ++L + + + I +L+ + +++ Y+ +TL Sbjct: 292 IVGKIASRDYINEETGELIVAANQELSLEALALLSQAGHKSIEVLFTNDLDHGPYMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE +F LFF D+YDLS VGR+K N L Sbjct: 352 RIDNTTDRLSALVEIYRMMRPGEPPTREAAEQLFESLFFSEDRYDLSAVGRMKFNSSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + DII +++ L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DETTGPGILDHADIIDVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSVFARCNPYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+D+ YLSA+EE IAQAN++L+EDGSF +EL+ R G+ L PR+ + Sbjct: 592 RKVVDGKVTDDIEYLSAIEEGLYVIAQANAALNEDGSFADELITARQKGDSGLHPRDHVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP ++A+ P VGTG+E + Sbjct: 652 YMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTIRADKPLVGTGIERQIGVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ + +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGTVQSVDASRIVIKVNDDELIPGEAGIDIYNLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 LPGEPVSRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP V+GT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPGSVTGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L D I+ R + Sbjct: 952 QLKEAKKDITEEFQILEGGLLARVRTLLLSAG-------------YGEDKIASMNRDALF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE +Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A++R Sbjct: 999 AVTLDDEALQNQLEQLAEQYDELKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVRR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G VDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQTVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG--TGSHTEKISDYDDDSVLRVAEQW 1200 A G+G K+ ++ K ++ R+FL++V I D V + + Sbjct: 1119 LAAKGIGDKLNDML---KEQQELHKFRNFLQRVYNLGDTRQKVDIEALTDQEVRTLVQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E +I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RKGLPIATPVFDGAPESSIKELLKLGDLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|323498403|ref|ZP_08103400.1| DNA-directed RNA polymerase subunit beta [Vibrio sinaloensis DSM 21326] gi|323316545|gb|EGA69559.1| DNA-directed RNA polymerase subunit beta [Vibrio sinaloensis DSM 21326] Length = 1342 Score = 1626 bits (4211), Expect = 0.0, Method: Composition-based stats. Identities = 704/1367 (51%), Positives = 973/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG +EEIL F+ KI + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTTEEILDIFFEKINFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E+G+++T+ ++ L++ GV + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIE--ANGKTYVETGRRVTARHIRQLEKDGVDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I +SL + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVASKDYINEATGEIIVGANQEISLESLANLSQAGHKALEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIER 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + + DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAQEQGTLDELDIIEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA++E IAQAN+ L E+G+F+EEL+ R GE L PRE +D Sbjct: 592 RRVVDGVVTDEVDYLSAIQEGQYVIAQANTVLTEEGTFSEELITARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +A Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGVIQSVDASRIVVKVNEDELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVSRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L + + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLIDGG-------------YTEAKLDTIDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLEDDAQQSQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +++ R FL+KV G ++ DD V + + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELAKFRDFLQKVYDLGDTRQKVDVASLTDDEVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E++I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGASEQSIKELLKLGDLPESGQLKLFDGRTGDEFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|50083579|ref|YP_045089.1| DNA-directed RNA polymerase subunit beta [Acinetobacter sp. ADP1] gi|81393894|sp|Q6FF90|RPOB_ACIAD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|49529555|emb|CAG67267.1| DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) [Acinetobacter sp. ADP1] Length = 1362 Score = 1626 bits (4211), Expect = 0.0, Method: Composition-based stats. Identities = 712/1374 (51%), Positives = 974/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D P L+ +Q SY FL +P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ + L ALG ++ +IL FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDF 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDIADND-GKVIVEQGKRINARHVRQMEASGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + G++ A ++ + + ++ ++ ILY + +++ +++ +TL Sbjct: 295 LYERITAEDITLRD-GDVIA-ANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R+DAL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+V++DV YLSA+EE IAQA+S++D DG EE+V R GE + Sbjct: 593 FGFLETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++AKR G++E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++ Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDD 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++++E+ Q++ +D +E I + R++ +L GQ + G K+ LS D++S Sbjct: 953 RALAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTT-KRGDKLSDDVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 DE + + ++V + + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVD+VLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ + I+ LR FL+K+ G E++ D+ + Sbjct: 1132 QILETHLGLAAKGLGEQIDKMLQQQRT---IAELRIFLDKIYNKVGGEQEELDTLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L +A + GVP++TPVFDGA+E I +L +A+L +GQ IL+DG TGE FDRPVTVGY Sbjct: 1189 LVLAGNLRKGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|18496615|gb|AAL74153.1|AF426390_1 RNA polymerase beta subunit [Xanthomonas campestris pv. campestris] Length = 1383 Score = 1626 bits (4211), Expect = 0.0, Method: Composition-based stats. Identities = 700/1389 (50%), Positives = 966/1389 (69%), Gaps = 35/1389 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ P++R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PISSYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT++GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG ++EE+L+ F+ + D Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLAEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ V L + D L Sbjct: 241 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAAVAALAVPDDYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+G TGE+ A D I E L + + + L+V+ ++ Y+ NTL Sbjct: 299 VGRILSHDVVDGSTGELLANANDEISEDQLAAFRKAGVDAVATLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A +IK+L ++RNG+G +DDID+LGN Sbjct: 419 EVLGESVLYDKKYFAERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRSSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L ++ F+D SP Q VS+ A+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRFQGESLLNAPAEVHFMDVSPMQTVSVPAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A+R G++EQ+DA RIV++ E + +GVD Sbjct: 719 PTLRSQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVI 958 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A GP Sbjct: 959 DVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGP- 1017 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 KK ++ + +S W+Q ++D+ +E + Q + + E F +K KI Sbjct: 1018 NLKKGDNVTDAYLDGLKKSDWFQLRMKDDDAADAIERAQKQIQAHEKEFEAPFADKRGKI 1077 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD+ PGVL++VKVF+A+KR +Q GD MAGRHGNKG+VS ++P EDMP++ G PVDI Sbjct: 1078 TQGDDLAPGVLKMVKVFLAVKRRVQPGDNMAGRHGNKGVVSNVVPVEDMPYMATGEPVDI 1137 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA GLG+KI+ ++ +A +S +R FL+ + S Sbjct: 1138 VLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRML---EAQTAVSDVRKFLDDIYNHDS 1194 Query: 1181 HTE----KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +S + D+ +L + + GVP++TPVFDGA E I ML +A+L +SGQ+ L Sbjct: 1195 AINAERVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELAELPQSGQTQL 1254 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 YDG TGE FDR TVGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GE Sbjct: 1255 YDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1314 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++ YGAAY LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++ Sbjct: 1315 MEVWALERYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRS 1374 Query: 1357 LGLSIDLEN 1365 L ++++LE Sbjct: 1375 LAINMELEE 1383 >gi|325203034|gb|ADY98488.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis M01-240149] Length = 1392 Score = 1626 bits (4211), Expect = 0.0, Method: Composition-based stats. Identities = 696/1398 (49%), Positives = 956/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG +E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYGNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ +D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAEDDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ +D D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRQDLGDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL ++ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNRLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|90581313|ref|ZP_01237110.1| DNA-directed RNA polymerase beta subunit [Vibrio angustum S14] gi|90437552|gb|EAS62746.1| DNA-directed RNA polymerase beta subunit [Vibrio angustum S14] Length = 1341 Score = 1626 bits (4211), Expect = 0.0, Method: Composition-based stats. Identities = 697/1366 (51%), Positives = 958/1366 (70%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D P L+ +Q S+ F+ + + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDAPYLLSIQLDSFQKFIEQD----PEGHYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL+++D D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVMYDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L AL +E+IL F+ KI + +G Sbjct: 175 RVIPYRGSWLDFEFDPKDSVFVRIDRRRKLPASIILRALNYTTEQILDMFFEKIHFEVQG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G +E G+++T+ ++ L + GV + + + Sbjct: 235 KSLVMELVP-DRLRGETASFDIE--ANGTVYVEQGRRITARHIRQLGKDGVDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G + D +N +TGE+ + A + ++L + + + I +L+ + +++ Y+ +TL Sbjct: 292 IVGKIASRDYINEDTGELIVAANQELSLEALALLSQAGHKSIEVLFTNDLDHGPYMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE +F LFF D+YDLS VGR+K N L Sbjct: 352 RIDNTTDRLSALVEIYRMMRPGEPPTREAAEQLFESLFFSEDRYDLSAVGRMKFNSSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + DII +++ L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EETTGPGILDHADIIDVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSVFARCNPYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGKVT+D+ YLSA+EE IAQAN++L+EDGSF +EL+ R G+ L PR+ + Sbjct: 592 RKVVDGKVTDDIEYLSAIEEGLYVIAQANAALNEDGSFADELITARQKGDSGLHPRDHVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP ++A+ P VGTG+E + Sbjct: 652 YMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTIRADKPLVGTGIERQIGVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ + +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGTVQSVDASRIVIKVNDDELIPGEAGIDIYNLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 LPGEPVSRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP V+GT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPGSVTGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L D I+ R + Sbjct: 952 QLKEAKKDITEEFQILEGGLLARVRTLLLSAG-------------YGEDKIASMNRDALF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE +Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A++R Sbjct: 999 AVTLDDEALQNQLEQLAEQYDELKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVRR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G VDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQTVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG--TGSHTEKISDYDDDSVLRVAEQW 1200 A G+G K+ ++ K ++ R+FL++V I D V + + Sbjct: 1119 LAAKGIGDKLNDML---KEQQELHKFRNFLQRVYNLGDTRQKVDIEALTDQEVRTLVQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E +I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RKGLPIATPVFDGAPESSIKELLKLGDLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE 1341 >gi|78099436|gb|ABB20854.1| RNA polymerase subunit B [Acinetobacter genomosp. 13] Length = 1362 Score = 1626 bits (4211), Expect = 0.0, Method: Composition-based stats. Identities = 707/1374 (51%), Positives = 972/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P +++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPHVMEAPYLLSIQVDSYRTFLQGGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R TYA P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ VRIDRRRK+ T L AL +E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVFVRIDRRRKLLATVILRALNYSNEQILNLFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L D + G ++D D G+ ++E GK++ + ++ ++ + L + + Sbjct: 237 GSYQIDLVP-DRLRGEMAQFDILDND-GKTIVEQGKRINARHVRQMEAANLAKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI ++G++ A V+ + + ++ ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAEDIT-LKSGDVI-PANTVLSHEIMVKLAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DII +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSHDDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKAND 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT++V YLSA+EE IAQA+S++D+DG TEE+V R G+ + Sbjct: 593 FGFLETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSAVDKDGMLTEEMVSVRHQGDFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + E++ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG Sbjct: 653 RMSPERVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++A R G +E VDA RIVIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIANRGGAIEYVDASRIVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R G++K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKGQESNGG-GSTKRGDKLSEDVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPNDEAIAERLTQIQVFLKEKSYEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI+ ++ + + + LR FL+K+ G E++ D + Sbjct: 1132 QILETHLGMAAKGLGDKIEKMLKEQRT---VIELREFLDKIYNKVGGEQEELDSLTDAEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ ++GVP++TPVFDGA+E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY Sbjct: 1189 LALSGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|194099908|ref|YP_002003045.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae NCCP11945] gi|239997913|ref|ZP_04717837.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae 35/02] gi|240015108|ref|ZP_04722021.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae DGI18] gi|240081700|ref|ZP_04726243.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae FA19] gi|240113976|ref|ZP_04728466.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae MS11] gi|240116712|ref|ZP_04730774.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae PID18] gi|240118934|ref|ZP_04732996.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae PID1] gi|240124472|ref|ZP_04737428.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae PID332] gi|240124660|ref|ZP_04737546.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae SK-92-679] gi|240129146|ref|ZP_04741807.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|254494732|ref|ZP_05107903.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae 1291] gi|260439529|ref|ZP_05793345.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae DGI2] gi|268593764|ref|ZP_06127931.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae 35/02] gi|268597797|ref|ZP_06131964.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae FA19] gi|268600040|ref|ZP_06134207.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae MS11] gi|268602382|ref|ZP_06136549.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae PID18] gi|268604644|ref|ZP_06138811.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae PID1] gi|268683102|ref|ZP_06149964.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae PID332] gi|268683235|ref|ZP_06150097.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae SK-92-679] gi|268687529|ref|ZP_06154391.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|291042765|ref|ZP_06568506.1| DNA-directed RNA polymerase beta subunit [Neisseria gonorrhoeae DGI2] gi|226699425|sp|B4RQW2|RPOB_NEIG2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|193935198|gb|ACF31022.1| DNA-directed RNA polymerase beta subunit [Neisseria gonorrhoeae NCCP11945] gi|226513772|gb|EEH63117.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae 1291] gi|268547153|gb|EEZ42571.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae 35/02] gi|268551585|gb|EEZ46604.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae FA19] gi|268584171|gb|EEZ48847.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae MS11] gi|268586513|gb|EEZ51189.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae PID18] gi|268588775|gb|EEZ53451.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae PID1] gi|268623386|gb|EEZ55786.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae PID332] gi|268623519|gb|EEZ55919.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae SK-92-679] gi|268627813|gb|EEZ60213.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|291013199|gb|EFE05165.1| DNA-directed RNA polymerase beta subunit [Neisseria gonorrhoeae DGI2] gi|317165365|gb|ADV08906.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae TCDC-NG08107] Length = 1392 Score = 1626 bits (4211), Expect = 0.0, Method: Composition-based stats. Identities = 697/1398 (49%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVYYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEQES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKLSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKERRKAGE---LREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ ++ +A + G ++PVFDGA E I ML +A E G Sbjct: 1194 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGF 1253 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|308388349|gb|ADO30669.1| DNA-directed RNA polymerase beta chain [Neisseria meningitidis alpha710] gi|325207167|gb|ADZ02619.1| DNA-directed RNA polymerase, beta subunit [Neisseria meningitidis NZ-05/33] Length = 1392 Score = 1626 bits (4211), Expect = 0.0, Method: Composition-based stats. Identities = 696/1398 (49%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG +E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYGNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTKEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL ++ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGE---LREFLNRLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|59802172|ref|YP_208884.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae FA 1090] gi|293398215|ref|ZP_06642420.1| DNA-directed RNA polymerase, beta subunit [Neisseria gonorrhoeae F62] gi|75355443|sp|Q5F5R5|RPOB_NEIG1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|59719067|gb|AAW90472.1| putative DNA-directed RNA polymerase beta chain [Neisseria gonorrhoeae FA 1090] gi|291611478|gb|EFF40548.1| DNA-directed RNA polymerase, beta subunit [Neisseria gonorrhoeae F62] Length = 1392 Score = 1626 bits (4211), Expect = 0.0, Method: Composition-based stats. Identities = 697/1398 (49%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVYYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEQES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1017 KLTKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKLSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKERRKAGE---LREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ ++ +A + G ++PVFDGA E I ML +A E G Sbjct: 1194 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGF 1253 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|114561329|ref|YP_748842.1| DNA-directed RNA polymerase, beta subunit [Shewanella frigidimarina NCIMB 400] gi|122301120|sp|Q089R1|RPOB_SHEFN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|114332622|gb|ABI70004.1| DNA-directed RNA polymerase, beta subunit [Shewanella frigidimarina NCIMB 400] Length = 1343 Score = 1626 bits (4211), Expect = 0.0, Method: Composition-based stats. Identities = 696/1364 (51%), Positives = 957/1364 (70%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D GL+AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPKVLDIPYLLSIQLDSFKKF----TDHDPTGERGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR+++FD + G ++ Sbjct: 57 FPIKSFSGYSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLFDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+P+MT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPMMTNNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +++IL F+ +I + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQDILDLFFERIEFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L D + G + D + G ++E+G+++T+ +K L++ L + D Sbjct: 235 DSLVMALVP-DRLRGETAGYDIKDAE-GALLVEAGRRITARHIKQLEKTNTTELEVPVDY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y A+D ++ +TGE+ + A I + L ++ + I++I L+++ +++ AYI +TL Sbjct: 293 IVGKYAAQDYIDEDTGEVLVTANSEITLEDLAKLSLAGIKNIDTLFINDLDHGAYIADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE +F LFF ++YDLS VGR+K N RL + Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEGLFQNLFFSEERYDLSKVGRMKFNRRLEI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI++++K ++++RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 AEDEGNGVLSKEDIVSVMKKIIEIRNGYDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG +T+DV YLSA+EE IAQAN +D DG EE + CR GE + + Sbjct: 593 RKVVDGVITDDVEYLSAIEEGRYVIAQANIEVDADGRMAEEQIACRHKGESTFMRAADVQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + AKR G+V+ VDA RIV++ E +L +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVAAKRGGVVDYVDASRIVVKVNEDELHAGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGEPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRALEIEDM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 + +D +E IL+ + R +L S ++E PR Sbjct: 953 HVRQARKDLGEEFKILEEGVLGRARNLLLSVG-------------YSEAKLAEIPRKDVL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q+E K+ + F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 IQVIDDETKQTELEQLAEQHEELKADFDKTFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQ+ E H+G Sbjct: 1060 TIQPGDKMAGRHGNKGVISKICPVEDMPYDEEGNPVDIVLNPLGVPSRMNIGQVLEVHMG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + ++ + ++ I + DD V+R+A K Sbjct: 1120 AAAKGIGNKITAMLEEQREIAELRGYIKQVYELGDDVLQRVDIDSFTDDEVVRLATNLKG 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E+ I ML +A L ESGQ L DG TG F+R VTVGY+YMLKLNH+ Sbjct: 1180 GIPIATPAFDGAKEKEIKQMLALAGLPESGQLTLCDGRTGNEFERKVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1300 NGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQE 1343 >gi|218511584|gb|ACK77784.1| RNA polymerase subunit B [Acinetobacter sp. HY-7] Length = 1362 Score = 1626 bits (4210), Expect = 0.0, Method: Composition-based stats. Identities = 720/1374 (52%), Positives = 972/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK PE+++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPEVMEAPYLLAIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R T+A P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTFAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++VRIDRRRK+ T+ L AL +E+IL FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATAILRALDYTNEQILEMFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDITDAD-GKVIVEQGKRINARHVRQMEASGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + GE+ +A V+ + ++ I+ IL+ + ++ ++I +TL Sbjct: 295 LYERITAEDITLKD-GEVI-QANTVLGHDIMVKLAEGGIKQFNILFTNDIDRGSFIADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF S++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + EDII ++K LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNEDIIDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKCNN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT DV YLSA+EE IAQA+SS+D D + TEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTEDVEYLSAIEEVGTVIAQADSSVDGDNNLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA+ SG ++AKR G++E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVARDSGVCVIAKRGGMIEFVDASRVVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVSLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV++F R GI+K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGIEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS +L+S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKGQESNGG-GSTKRGDKLSEELLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEIQPSDEGIAERLTQIQVFLKEKSHEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVD+VLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDINGVPVDVVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG++I ++ + + I+ LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGLAAKGLGEQIDKMLKEQRT---IAELRVFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ + GVP++TPVFDGA+E I +L +A+L SGQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LVLSGNLRKGVPLATPVFDGAEEGQIKELLELAELPRSGQTVLYDGRTGERFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWPLEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTRVY++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRVYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|219871716|ref|YP_002476091.1| DNA-directed RNA polymerase subunit beta [Haemophilus parasuis SH0165] gi|254765292|sp|B8F741|RPOB_HAEPS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|219691920|gb|ACL33143.1| DNA-directed RNA polymerase subunit beta [Haemophilus parasuis SH0165] Length = 1342 Score = 1625 bits (4209), Expect = 0.0, Method: Composition-based stats. Identities = 697/1367 (50%), Positives = 959/1367 (70%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK +++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKSFGKRSQVLNVPYLLTIQLDSFDKFIQRD----PEGLQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +GA L++VSYE P FDV +C R TYA PL++ LRL+ FD + G ++ Sbjct: 57 FPIVSSNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ++YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHASGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +EEIL+ F+ + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILNMFFETATFHIED 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +ESG+++T+ +++L++ + + + ++ Sbjct: 235 NRLLMTLVPERL-RGETAAFDIE--ANGKIYVESGRRITARHIRALEKDNITQIQVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A D V+ TGEI A I ++L + + +I +L+ + ++ YI TL Sbjct: 292 IVGRVTARDYVDLSTGEIVCPANSEIGLETLAALAQAGYNEIEVLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F+ +FF +D+YDLS VGR+K N L++ Sbjct: 352 RIDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSTDRYDLSAVGRMKFNRSLDI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DII ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGVGTGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP+ Sbjct: 532 ALGSGGLTRERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT ++ YLSA+EE IAQANS+LDE+ FT+ V CR GE L E+I Sbjct: 592 RKVVNGQVTEEIEYLSAIEEGAYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYRPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A++AKR G ++ VDA RIV++ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVIAKRGGTIQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK+G+ V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V ED FT+ Sbjct: 772 VKLGEPVGRGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ + PEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R+ +E Sbjct: 892 GETQLIPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKDIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q+ +D +E IL+ +++R+ +L + R +W Sbjct: 952 IQLREAKKDLTEELEILEAGLFTRVRNLLLEGGVA-------------QATLDNLAREKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE Q +E L Q+E + E + + K KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTLDDEAKQNQLEQLAEQHEELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I +I K +I+ LR +++K G G+ + +S + D+ V+R+A+ Sbjct: 1119 GLAARGIGDQIDKMI---KQQQEIAKLREYIQKAYDLGHGAQSVDLSTFSDEEVMRLAQN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+P++TPVFDGA E I +L + L SGQ LYDG TGE F+R VTVGY+YMLKL Sbjct: 1176 LRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLYDGRTGEKFERLVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQLGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV G E G PESFNV+ KE++AL + ++L+ + Sbjct: 1296 DDVNGRTKMYKNIVDGTHYMEPGIPESFNVITKEIRALAIDMELDEA 1342 >gi|212634821|ref|YP_002311346.1| DNA-directed RNA polymerase subunit beta [Shewanella piezotolerans WP3] gi|226699447|sp|B8CNC5|RPOB_SHEPW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|212556305|gb|ACJ28759.1| DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) [Shewanella piezotolerans WP3] Length = 1343 Score = 1625 bits (4209), Expect = 0.0, Method: Composition-based stats. Identities = 697/1364 (51%), Positives = 953/1364 (69%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK +++DIP L+ +Q S+ F D G +AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRQKVLDIPYLLSIQLDSFKKF----TDQDPTGERGFEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGITYSAPLRVKLRMVLYDREAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+ + L AL +++IL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLAASIILRALDYSTQDILDLFFDRVNFKIKQ 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L A D + G S + D + G ++E G+++T+ ++ L++ L + + Sbjct: 235 DSLVMDLVA-DRLRGETASYDIKDAE-GTVLVEKGRRITARHIRQLEKTNTTELEVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +D ++ +TGE+ + A I + L ++ + I+++ LY++ ++N AYI +TL Sbjct: 293 IAGKISGQDYIDPDTGEVLVSANAEIGLEDLAKLSLAGIKEVSTLYINELDNGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N RL++ Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEALFNNLFFSEERYDLSKVGRMKFNRRLSI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 DDDEGTGILSKEDIVAVMKNIIAIRNGLDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSTFARTNNYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT++V YLSA+EE IAQA LDE+ +EL+ CR G+ + I Sbjct: 593 RKVIDGVVTDEVDYLSAIEEGRYVIAQAIVELDENNRMMDELIACRHKGDSTFMGAADIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + AKR G V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVAAKRGGYVDYVDASRIVVKVDEAELTPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD V R D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGDPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G+DK++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVDKDKRAVEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ + R +L G + PRSQ Sbjct: 953 HIAQAKKDLTEEFQILEDGVLGRARNLLLGAG-------------FDEAQLDAIPRSQLL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q E K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 MQTIDDEAKQTELEQLAEQAEELKADFDKKFEVKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQ+ E H+G Sbjct: 1060 TIQPGDKMAGRHGNKGVISKICPVEDMPYDEKGNPVDIVLNPLGVPSRMNIGQVLEVHMG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G +I ++ + + ++ + ++ I + DD VLR+A+ K Sbjct: 1120 AAAKGIGNRITEMLEEQRELAELRGYIKEVYELGDEVQQRVDIDSFTDDEVLRLAKNLKG 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP +TP FDGA E+ I ML +A L SGQ L DG TG F+R VTVGY+YMLKLNH+ Sbjct: 1180 GVPTATPAFDGAKEKEIKQMLALAGLPTSGQLTLCDGRTGNEFERQVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1300 NGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQK 1343 >gi|254805823|ref|YP_003084044.1| DNA-directed RNA polymerase beta chain [Neisseria meningitidis alpha14] gi|254669365|emb|CBA08472.1| DNA-directed RNA polymerase beta chain [Neisseria meningitidis alpha14] Length = 1392 Score = 1625 bits (4209), Expect = 0.0, Method: Composition-based stats. Identities = 698/1398 (49%), Positives = 956/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ K S LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRML---KEQRKASELREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYALQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|301155467|emb|CBW14933.1| RNA polymerase, beta subunit [Haemophilus parainfluenzae T3T1] Length = 1342 Score = 1625 bits (4209), Expect = 0.0, Method: Composition-based stats. Identities = 709/1367 (51%), Positives = 974/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G + R+RK FGK +++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYTEKKRIRKDFGKRSQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKESEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG EEIL+ F+ K+ + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTVEEILNLFFDKVTFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +K+L++ V + + ++ Sbjct: 235 NKLLMTLVPERL-RGETATFDIE--ANGKVYVERGRRITARHIKALEKDNVTQVEVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ E+GEI A I + L ++ + + I L+ + ++ YI TL Sbjct: 292 IAGKVAAKDYVDLESGEIICPANGEISLEVLAKLSQAGYKVIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL +IYR+MRPG+ T +E++FN LFF +++YDLS VGR+K N L + Sbjct: 352 RVDPTYDRVSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSAVGRMKFNRSLGI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DII ++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGTGILSNDDIIRVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV DG+VT ++ YLSA++E N IAQANS+LDE+ FT+ V R GE L E+I Sbjct: 592 RKVVDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR GIV+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGIVQYVDASRIVIKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D DE IL+ +++R+ +L + + + + R++W Sbjct: 952 MQLKQAKKDLSDELEILEAGLFARVRNLLIAGG-------------IDAAQLDKMDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTISDEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RHIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K D+ LR +++K G G+ +S + DD ++R+AE Sbjct: 1119 GLAAKGIGDQINTMI---KQKQDVEKLRGYMQKAYDLGHGAQKVDLSTFSDDEIMRLAEN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+PV+TPVFDGADE+ I ML++ L SGQ LYDG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPVATPVFDGADEQEIKEMLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV GN + GTPESFNV++KE+++LGL+I+L+ Sbjct: 1296 DDVNGRTKMYKNIVGGNQQMDPGTPESFNVIMKEIRSLGLNIELDEE 1342 >gi|209696266|ref|YP_002264196.1| DNA-directed RNA polymerase subunit beta [Aliivibrio salmonicida LFI1238] gi|226699365|sp|B6ENR3|RPOB_ALISL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|208010219|emb|CAQ80550.1| DNA-directed RNA polymerase, beta-subunit [Aliivibrio salmonicida LFI1238] Length = 1342 Score = 1625 bits (4209), Expect = 0.0, Method: Composition-based stats. Identities = 712/1367 (52%), Positives = 969/1367 (70%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFTKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + LE+VSY P+FDV +C R +TY+ PL++ LRL+V+D D G ++ Sbjct: 57 FPIQSYNGNSKLEYVSYNLREPEFDVKECQIRGVTYSAPLRVKLRLVVYDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L AL +EEIL F+ K+V+ + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALRKTTEEILDLFFDKVVFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E+G+++T+ ++ L + V + + D Sbjct: 235 QTLMMELLPERL-RGETATFDIES--NGKVYVEAGRRITARHIRQLTKDEVNNIEVPVDY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G + D VN +TGEI I A + L + + + I +L+ + +++ AYI +TL Sbjct: 292 IVGKVASHDYVNEDTGEIIIAANQEFSLEDLANLSQAGHKKIEVLFTNDLDHGAYISDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL+++YR+MRPG+ T AES+F LFF D+YDLSTVGR+K N + Sbjct: 352 RADSTVDRLSALVEVYRMMRPGEPPTKEAAESLFESLFFSEDRYDLSTVGRMKFNSSIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + + DII +++ L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DNGEGAGILDETDIIEVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+++AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSAYARCNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V D VT DV YLSA+EE IAQAN+ L E+G+F +EL+ R GE L PRE I Sbjct: 592 RRVVDNIVTEDVDYLSAIEEGTFVIAQANAVLTEEGTFADELIIARQKGESGLHPREHIQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERCVAID 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGMVQSVDASRIVIKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 LPGEPVTRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L ++G K + R QW Sbjct: 952 QLKEAKKDITEEFQILEGGLLARVRTLLT----LAGTSEVK---------LDAMDRKQWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EITLDDESQQNQLEQLAEQYDELKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E H+G Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHMG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE--KISDYDDDSVLRVAEQW 1200 A G+G K+ ++ K ++ R+FL+KV G + I+ DD V + + Sbjct: 1119 LAAKGVGDKLNQML---KEQQELHKFRNFLQKVYDLGETRQEVDIAALSDDEVRTLVKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TP+FDGA E +I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPIFDGAPESSIKELLKLVDLPESGQLKLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|34499648|ref|NP_903863.1| DNA-directed RNA polymerase subunit beta [Chromobacterium violaceum ATCC 12472] gi|41017646|sp|Q7NQE6|RPOB_CHRVO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|34105498|gb|AAQ61853.1| DNA-directed RNA polymerase, beta subunit [Chromobacterium violaceum ATCC 12472] Length = 1390 Score = 1625 bits (4209), Expect = 0.0, Method: Composition-based stats. Identities = 697/1397 (49%), Positives = 961/1397 (68%), Gaps = 42/1397 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + DER + GLQAAFKS+ Sbjct: 1 MSYSFTEKKRIRKSFAKRASVLDVPFLLATQIDSYTEFLQLGTPLDERKDVGLQAAFKSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A L+F Y P FDV +C R +T+A PL+ +RL +FD + + Sbjct: 61 FPIVSHNGYARLDFAHYVLGEPPFDVQECQLRGITFAAPLRARIRLTIFDK--ESSKPVV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT +G+F+I G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTANGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD+++ RIDRRRK+PVT L ALG +EEILS FY + Sbjct: 179 RVIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYTNEEILSEFYSFDTFYLTK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G +V D G+ ++ K++T+ ++ ++ + + + +D Sbjct: 239 SGVFMRVVPERL-KGEVAKFDIVAAD-GKLIVAKDKRITAKHIRDIQTAELDRIEVPADA 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A ++VN TGE+ A + + E+ L ++ +E+ + +L+ + ++ AYI TL Sbjct: 297 LLGKMLAHNVVNQNTGEVIARANEEVTEEILAKLALAEVEQVEVLFTNDLDQGAYISQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD +D+ A + IYR+MRPG+ T E++F LFF + YDLS VGR+K + R Sbjct: 357 RTDDIQDQTQARVAIYRMMRPGEPPTEDAVEALFQRLFFSDETYDLSRVGRMKFSSRTYQ 416 Query: 423 DTPDD---------------------VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGN 461 DD + EDI+++I IL +LRNG+G +DDID+LGN Sbjct: 417 YKFDDKTPEWFKTLIGEKFASRRDVMEGTLATEDIVSVIAILTELRNGRGEVDDIDHLGN 476 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGE+ +NQ+R GL+R+ER++KER++ + D++MP DLINAKPV +A+ EFF SSQ Sbjct: 477 RRVRSVGELAENQFRAGLVRVERAVKERLNQAESDNLMPHDLINAKPVSAAIKEFFGSSQ 536 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIG Sbjct: 537 LSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 596 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL+ +AR N +GF+ETPYRKV DGKVTN++ YLSA+EE IAQAN+ LD +G+ Sbjct: 597 LINSLSVYARTNEFGFLETPYRKVVDGKVTNEIDYLSAIEEGRYVIAQANAELDGEGALI 656 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 +ELV CR GE IL +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAV Sbjct: 657 DELVTCREKGETILATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAV 716 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDI 761 P L+ E FVGTG+E VA SG +VA+R G+V+ VDA R+V+R + + GVDI Sbjct: 717 PCLRPEKAFVGTGIERSVAVDSGTTVVARRGGVVDYVDAGRVVVRVNDEEATAGEVGVDI 776 Query: 762 YRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGY 821 Y L KF RSNQNT +NQRP+VKVGD + R D++ADG STDLG+LALG+NM +AFMPW+GY Sbjct: 777 YNLTKFTRSNQNTNINQRPVVKVGDHIARGDVVADGASTDLGELALGQNMTIAFMPWNGY 836 Query: 822 NFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGI 881 N+EDS+LISE++V+ED +TSIHIEE V+ARDTKLGPEEITRDIPN+SE +DE GI Sbjct: 837 NYEDSILISEKLVAEDRYTSIHIEELSVVARDTKLGPEEITRDIPNLSERMAGRLDESGI 896 Query: 882 ICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVD 941 + +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+D Sbjct: 897 VYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTVGTVID 956 Query: 942 VRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG 1001 V++F R GI++++R+ S+ +++ D +D+ I D + +SR+ ++ G+ A GPK Sbjct: 957 VQVFTREGIERDKRAQSIIDAELKRYRLDLNDQLRIFDNDAFSRIERLIVGKAANGGPKR 1016 Query: 1002 FKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 K TV+ + ++ P + W+ + DE + + +E +K + + +F++K K+ Sbjct: 1017 LAKGTVIDQEYLAGLPTKHDWFDIRMADEDIAKQLELIKESLAQKREEFDLKFEDKKRKL 1076 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GD++PPGV ++VKV++A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVDI Sbjct: 1077 TQGDELPPGVQKMVKVYLAVKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMGDGRPVDI 1136 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + +R++LE++ Sbjct: 1137 VLNPLGVPSRMNIGQILEVHLGWAAKGIGERINRMV----REQSAAEIRAYLERIYNETG 1192 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DLD 1229 E+I+ D V+++A+ G+ +TPVFDGA E I ML +A + Sbjct: 1193 KPEEIAALSDAEVMQLAQNLSKGMTFATPVFDGAKEAEIKHMLDLAYPDGDELTEKMGFN 1252 Query: 1230 ES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 ES Q L+DG +GE FDR VTVG ++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1253 ESKTQMTLFDGRSGEAFDRKVTVGVMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQ 1312 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV G + G PESFN Sbjct: 1313 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKVYENIVKGEHKIDAGMPESFN 1372 Query: 1349 VLVKEMQALGLSIDLEN 1365 VLVKE+++LGL +DLE Sbjct: 1373 VLVKEIRSLGLDMDLER 1389 >gi|54310498|ref|YP_131518.1| DNA-directed RNA polymerase subunit beta [Photobacterium profundum SS9] gi|81398906|sp|Q6LLW2|RPOB_PHOPR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|46914941|emb|CAG21716.1| putative DNA-directed RNA polymerase, beta subunit [Photobacterium profundum SS9] Length = 1341 Score = 1625 bits (4208), Expect = 0.0, Method: Composition-based stats. Identities = 693/1366 (50%), Positives = 959/1366 (70%), Gaps = 27/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P ++D P L+ +Q S+ F+ + + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPRVLDAPYLLSIQLDSFKKFIEQD----PEGHYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL+++D D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVMYDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+ + L AL +E+IL F+ K+ + +G Sbjct: 175 RVIPYRGSWLDFEFDPKDNVFVRIDRRRKLAASVILRALDYTTEQILDMFFDKVSFEVQG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G S + G+ +E G+++T+ ++ L + GV + + + Sbjct: 235 KSLVMELVPERL-RGETASFDIE--ANGKVYVEQGRRITARHIRQLGKDGVDQIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G + D VN ETGE+ A ++ + L + + + I +L+ + ++ Y+ TL Sbjct: 292 IVGKISSRDYVNEETGELIAAANQELNLEILALLSQAGHKSIEVLFTNDLDYGPYMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE +FN LFF D+YDLS VGR+K N L Sbjct: 352 RVDSTTDRLSALVEIYRMMRPGEPPTREAAEQLFNSLFFSEDRYDLSAVGRMKFNSSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + DII ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EETTGSGILDHSDIIEVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N+YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSVYARCNSYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT+ + YLSA+EE IAQAN++L+ DGSF++EL+ R G+ L PR+ + Sbjct: 592 RKVVDSKVTDQIDYLSAIEEGQYVIAQANAALETDGSFSDELITARQKGDSGLHPRDHVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 652 YMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERSVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGQVQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+N+ +AFMPW+GYNFEDS+L+SER+V +D T+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNIRIAFMPWNGYNFEDSILVSERVVQQDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGT++DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + I+ R + + Sbjct: 952 QLKEAKKDITEEFQILEGGLLARVRTLLLSIG-------------YSEEKIASMDRERLF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE +Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ALTLDDESLQNQLEQLAEQYDELKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G V+IVLNPLGVPSRMN+GQI ETH+G Sbjct: 1059 RIQPGDKMAGRHGNKGVISKICPVEDMPYDEKGQTVEIVLNPLGVPSRMNIGQILETHMG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS--DYDDDSVLRVAEQW 1200 A G+G K+ ++ K ++ R+FL+KV G + + DD V + + Sbjct: 1119 LAAKGIGDKLNEML---KQQQELHKFRNFLQKVYDLGDTRQDVDIAALSDDQVHTLVQNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E +I +L++ DL ESGQ ++DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RDGLPIATPVFDGAPESSIKELLKLGDLPESGQLKMFDGRTGDMFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDK 1341 >gi|157960007|ref|YP_001500041.1| DNA-directed RNA polymerase subunit beta [Shewanella pealeana ATCC 700345] gi|189043867|sp|A8GYW9|RPOB_SHEPA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157845007|gb|ABV85506.1| DNA-directed RNA polymerase, beta subunit [Shewanella pealeana ATCC 700345] Length = 1343 Score = 1625 bits (4208), Expect = 0.0, Method: Composition-based stats. Identities = 697/1364 (51%), Positives = 957/1364 (70%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P ++DIP L+ +Q S+ F D G +AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPRVLDIPYLLSIQLDSFKKF----TDQDPTGERGFEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+ + L AL +++IL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLAASIILRALDYSTQDILDLFFDRVNFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L A D + G S + D + G ++E G+++T+ ++ L++ L + + Sbjct: 235 DSLVMDLVA-DRLRGETASYDIKDAE-GTVLVEKGRRITARHIRQLEKTNTTELEVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +D ++ +TGE+ + A I + L ++ + I++I LY++ ++N AYI +TL Sbjct: 293 IAGKISGQDYIDPDTGEVLVSANADISLEDLAKLSMAGIKEISTLYINELDNGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++FN LFF ++YDLS VGR+K N RL++ Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEALFNNLFFSEERYDLSKVGRMKFNRRLSI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 DDDEGTGILSKEDIVAVMKNIIAIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSTFARTNNYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT++V YLSA+EE IAQA LDE+G +EL+ CR G+ + I Sbjct: 593 RKVIDGVVTDEVDYLSAIEEGRYVIAQAIVQLDENGRMMDELIACRHKGDSTFMGAADIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + AKR G V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVAAKRGGYVDYVDASRIVVKVNEAELTPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD + R D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGDPIVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ + R +L G ++ PRSQ Sbjct: 953 HIAQAKKDLTEEFQILEDGVIGRARNLLIGAG-------------FDEAQLAAIPRSQLL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q E K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 VQTIDDEVKQTELEQLAEQAEELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQ+ E H+G Sbjct: 1060 TIQPGDKMAGRHGNKGVISKICPVEDMPYDEKGNPVDIVLNPLGVPSRMNIGQVLEVHMG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G +I ++ + + ++ + ++ I + DD +LR+A+ K Sbjct: 1120 AAAKGIGNRITEMLEEQRELAELRGYIKQVYELGDEVIQKVDIDSFTDDEILRLAKNLKG 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP++TP FDGA E+ I ML +A L +SGQ L DG TG F+R VTVGY+YMLKLNH+ Sbjct: 1180 GVPIATPAFDGAKEKEIKQMLELAGLPQSGQLTLIDGRTGNEFERKVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1300 NGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDTK 1343 >gi|325576515|ref|ZP_08147268.1| DNA-directed RNA polymerase subunit beta [Haemophilus parainfluenzae ATCC 33392] gi|325161205|gb|EGC73319.1| DNA-directed RNA polymerase subunit beta [Haemophilus parainfluenzae ATCC 33392] Length = 1342 Score = 1625 bits (4207), Expect = 0.0, Method: Composition-based stats. Identities = 708/1367 (51%), Positives = 973/1367 (71%), Gaps = 28/1367 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G + R+RK FGK P+++++P L+ +Q S+D F+ + +GL+AAF+SV Sbjct: 1 MGYSYTEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKD----PEGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++V Y + P+FDV +C R TYA L++ LRL+ +D + ++++ Sbjct: 57 FPIVSNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDK--ESSSRAV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKESEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG EEIL+ F+ K+ + G Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTVEEILNLFFDKVTFEIAG 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +K+L++ V + + ++ Sbjct: 235 NKLLMTLVPERL-RGETATFDIE--ANGKVYVERGRRITARHIKALEKDNVTQVEVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ E+GEI A I + L ++ + + I L+ + ++ YI TL Sbjct: 292 IAGKVAAKDYVDLESGEIICPANGEISLEVLAKLSQAGYKIIETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL +IYR+MRPG+ T +E++FN LFF +++YDLS VGR+K N L + Sbjct: 352 RVDPTYDRVSALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSAVGRMKFNRSLGI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +DII ++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGEGTGILSNDDIIRVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++ PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV G+VT ++ YLSA++E N IAQANS+LDE+ FT+ V R GE L E+I Sbjct: 592 RKVVYGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G V+ VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTVQYVDASRIVIKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +GD + R +++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VNLGDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ VSGTV+DV++F R G++K++R++ +E Sbjct: 892 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEE 951 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D DE IL+ +++R+ +L + + + + R++W Sbjct: 952 MQLKQAKKDLSDELEILEAGLFARVRNVLIAGG-------------IDAAQLDKMDRTKW 998 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QYE + E + + K +KI GDD+ PGVL+VVKV++A+K Sbjct: 999 LEQTISDEEKQNQLEQLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVK 1058 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHL Sbjct: 1059 RHIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHL 1118 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQ 1199 G A G+G +I ++I K D+ LR +++K G G+ +S + DD ++R+AE Sbjct: 1119 GLAAKGIGDQINAMI---KQKQDVEKLRGYMQKAYDLGHGAQKVDLSTFSDDEIMRLAEN 1175 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + G+PV+TPVFDGADE+ I ML++ L SGQ LYDG TGE F+RPVTVGY+YMLKL Sbjct: 1176 LRKGLPVATPVFDGADEQEIKEMLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKL 1235 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 NH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KS Sbjct: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++Y++IV GN + GTPESFNV++KE+++LGL+I+L+ Sbjct: 1296 DDVNGRTKMYKNIVGGNQQMDPGTPESFNVIMKEIRSLGLNIELDEE 1342 >gi|240017557|ref|ZP_04724097.1| DNA-directed RNA polymerase subunit beta [Neisseria gonorrhoeae FA6140] Length = 1392 Score = 1625 bits (4207), Expect = 0.0, Method: Composition-based stats. Identities = 697/1398 (49%), Positives = 957/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVYYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEQES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGSGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKLSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G+ LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKERRKAGE---LREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ ++ +A + G ++PVFDGA E I ML +A E G Sbjct: 1194 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGF 1253 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|160895959|ref|YP_001561541.1| DNA-directed RNA polymerase subunit beta [Delftia acidovorans SPH-1] gi|226699393|sp|A9BR98|RPOB_DELAS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|160361543|gb|ABX33156.1| DNA-directed RNA polymerase, beta subunit [Delftia acidovorans SPH-1] Length = 1370 Score = 1624 bits (4205), Expect = 0.0, Method: Composition-based stats. Identities = 691/1375 (50%), Positives = 968/1375 (70%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG ++++P L+++QK +Y FL ++AP +R EGLQAAF S Sbjct: 1 MAYSYTERKRIRKSFGSRDSVLEVPYLLQMQKDAYTAFLQSDVAPKKRTIEGLQAAFNSA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AKS 121 FPI + +G ++FV Y P FDV +C R LT+A ++ ++LI++D + T +K Sbjct: 61 FPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKV 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +K++KEQ +YMG++PLMT+ G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 VKEVKEQEVYMGEVPLMTEKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KD++ R+DRRRK+PV+ L A+G+ E IL+ F+ + Sbjct: 181 ARIIPYRGSWLDFEFDPKDLLFFRVDRRRKMPVSILLKAIGLTPESILANFFVNDNFRLM 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 + L G + D +G+ V+ K++T+ + L++ G KF+ + D Sbjct: 241 DSGAQMEFVSERL-RGEVARFDITD-KSGKVVVAKDKRVTARHTRELEQSGTKFISVPED 298 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G VA++IV+ +TGEI +A + + E L+++ + I+D+ +Y + ++ AYI T Sbjct: 299 FLIGRVVAKNIVDPDTGEIIAKANEELTESLLKKLRSAGIQDLQCIYTNELDQGAYISQT 358 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L TD+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N ++ Sbjct: 359 LRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKVG 418 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + EDI+A++KILVDLRNGKG +DDID+LGNRRVR VGE+ +NQYR GL R Sbjct: 419 RDGATGPMVLSNEDILAVVKILVDLRNGKGEVDDIDHLGNRRVRCVGELAENQYRTGLAR 478 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH RR+ Sbjct: 479 IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRV 538 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIETP Sbjct: 539 SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETP 598 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V DGKVT ++ YLSA+EE IAQAN+ LD +G +LV R G+ LV E++ Sbjct: 599 YRRVADGKVTMEIDYLSAIEEGKYIIAQANAELDAEGRLIGDLVSAREKGDSTLVSAERV 658 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SP Q+VS+AASLIPFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A Sbjct: 659 QYMDVSPAQIVSVAASLIPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVAAV 718 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R GIV+ VDA RIV+R + + GVDIY L+K+QRSNQNT ++QRP+ Sbjct: 719 DSGTVVTATRGGIVDYVDATRIVVRVNDAEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPI 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD++ + D++ADG STDLG++A+G+NML+AFMPW+GYNFEDS+LI+ER+V+ED +TS Sbjct: 779 VKRGDKLAKGDVVADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILINERVVAEDRYTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD+LVGK+TPK Sbjct: 839 IHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDVLVGKVTPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV G GTV+DV++F R GI +++R+ + Sbjct: 899 GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQIID 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ I++ + + R+ ++L G+ A GP+ K + + + W Sbjct: 959 DELKRYRLDLNDQLRIVEADAFDRIEKLLNGRVANGGPQKLAKGAKIDKAYLDGVEKFHW 1018 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + +++V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV++A+K Sbjct: 1019 FDIRPAEDEVATQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK 1078 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG+ DIVLNPLGVPSRMN+GQ+ E HL Sbjct: 1079 RRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGSTADIVLNPLGVPSRMNIGQVLEVHL 1138 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA GLG++I ++ + + +R+F+E++ + E ++ DD ++ +A+ Sbjct: 1139 GWAGKGLGQRIGDML---QQEARAAEIRTFMEEIYNSRGRKEDLTQLDDKEIVSMAQALT 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMA---------DLDES-GQSILYDGLTGEPFDRPVTV 1251 +GVP +TPVFDGA E+ I ML +A L ES Q+ LYDG TG+ F+RP T+ Sbjct: 1196 TGVPFATPVFDGASEQEIQDMLHLAYPEELAQRKGLTESRTQAYLYDGRTGDRFERPTTI 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAYVL Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDVVGRT+VYESIV G E G PESFNVLVKE+++LGL I+LE S Sbjct: 1316 QEMLTVKSDDVVGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS 1370 >gi|158564304|sp|Q21SF7|RPOB_RHOFD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1370 Score = 1624 bits (4205), Expect = 0.0, Method: Composition-based stats. Identities = 687/1375 (49%), Positives = 959/1375 (69%), Gaps = 18/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG +++IP L+++QK +Y FL ++ P +R EGLQAAF++ Sbjct: 1 MAYSYTERKRIRKNFGSRDSVLEIPYLLQMQKDAYTAFLQADVHPKKRTAEGLQAAFEAA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AKS 121 FPI + +G ++++ Y P FDV +C R LT+A ++ ++L ++D + T K Sbjct: 61 FPIISHNGFVEMKYLEYNLAKPAFDVRECQTRGLTFASAVRAKVQLFIYDRESSTSQNKV 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 IK++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 IKEVKEQEVYMGEVPLMTTKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KD ++ R+DRRRK+PVT L A+G++ E IL+ F+ + Sbjct: 181 ARIIPYRGSWLDFEFDPKDFLYFRVDRRRKMPVTILLKAIGLNHESILANFFVNDNFRLM 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 A L G + D +G+ ++ K++T+ + L++ G + + D Sbjct: 241 DSGAQMEFVAERL-RGEVARFDITD-KSGKVIVAKEKRVTARHTRELEQSGTTHISVPED 298 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G VA +IV+ +TGEI +A + + E ++++ + ++D+P +Y + ++ AYI T Sbjct: 299 FLLGRVVARNIVDTDTGEILAKANEELTEALIKKLRLAGVQDLPCIYTNELDQGAYISQT 358 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L +D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N ++ Sbjct: 359 LRSDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKMG 418 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + EDI+A++KILVDLRNG+G +DDID+LGNRRVR VGE+ +NQYR GL R Sbjct: 419 RPESTGPMVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELAENQYRTGLAR 478 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N LS ITH RR+ Sbjct: 479 IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRV 538 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIETP Sbjct: 539 SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNDYGFIETP 598 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V DGKVT ++ YLSA+EE IAQAN+ LD+DG T E++ R AGE I E++ Sbjct: 599 YRRVVDGKVTMEIDYLSAIEEGKFVIAQANAVLDKDGKLTGEMISAREAGETIFAGPERV 658 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SP Q+VS+AASL+PFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A Sbjct: 659 QYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPILRPEKPMVGTGIERVAAI 718 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA R+VIR + + GVDIY L+K+QRSNQNT ++QRP+ Sbjct: 719 DSGTVVTATRGGMVDYVDATRVVIRVNDDEAQAGEVGVDIYNLIKYQRSNQNTNIHQRPI 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD + + D+IADG STDLG+LALG+NML+ FM W+GYNFEDS+LISER+V++D +TS Sbjct: 779 VKKGDMLAKGDVIADGASTDLGELALGQNMLIGFMTWNGYNFEDSILISERVVADDRYTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD LVGK+TPK Sbjct: 839 IHIEELVVMARDTKLGCEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV G GTV+DV++F R GI ++ R+ + Sbjct: 899 GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIVRDRRAQQIID 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ +++ + + R+ ++L G+ A GP+ K T + ++ + W Sbjct: 959 DELKRFRLDLNDQLRLVEADSFDRIEKLLVGKVANGGPQKLAKGTTIDKAYLTSVEKHHW 1018 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + ++ V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV++A+K Sbjct: 1019 FDIRPAEDDVAAQLESIKNSMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK 1078 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I+P EDMPF+ DGTP DIVLNPLGVPSRMN+GQ+ E HL Sbjct: 1079 RHLQPGDKMAGRHGNKGVVSKIVPVEDMPFMADGTPCDIVLNPLGVPSRMNIGQVLEVHL 1138 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G++I ++ +A ++ LR FL+++ E ++ DD VL +A Sbjct: 1139 GWAAKGIGQRIGDML---QAEAKVAELRKFLDELYNGTGRKEDLAQLSDDEVLEMAGNLT 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESG-----------QSILYDGLTGEPFDRPVT 1250 SGVP +TPVFDGA E I +ML++A E Q+ LYDG TG+PF+RP T Sbjct: 1196 SGVPFATPVFDGASEADIGAMLKLA-YPEDAIRQKGLTPARTQAYLYDGRTGDPFERPTT 1254 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 +GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1255 IGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1314 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 LQEMLT+KSDDV GRT+VYESIV G + E G PESFNVLVKE+++LG+ I+LE Sbjct: 1315 LQEMLTVKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGIDIELER 1369 >gi|261364718|ref|ZP_05977601.1| DNA-directed RNA polymerase, beta subunit [Neisseria mucosa ATCC 25996] gi|288567014|gb|EFC88574.1| DNA-directed RNA polymerase, beta subunit [Neisseria mucosa ATCC 25996] Length = 1392 Score = 1624 bits (4204), Expect = 0.0, Method: Composition-based stats. Identities = 696/1398 (49%), Positives = 955/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLDVPFLLATQIDSYAKFLQLENAFDQRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSE 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVVGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDISNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + ++ + LY++ ++ YI NTL Sbjct: 297 LLGKALAADLIDPETGEVLAVANDEITEELLAKFDIHGVKQLTTLYINELDQGGYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D++ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETVDQQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQHSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD+DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDKDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D+IADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLIADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ +D D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRQDLGDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + +S++ ++ P + W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1017 KLAKGSEISTEYLAGLPSKHDWFDIRLADEDLAKQLELIKLSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ K S LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRML---KEQRKASELREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GEPFDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|255067807|ref|ZP_05319662.1| DNA-directed RNA polymerase, beta subunit [Neisseria sicca ATCC 29256] gi|255047898|gb|EET43362.1| DNA-directed RNA polymerase, beta subunit [Neisseria sicca ATCC 29256] Length = 1392 Score = 1624 bits (4204), Expect = 0.0, Method: Composition-based stats. Identities = 695/1398 (49%), Positives = 955/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLDVPFLLATQIDSYAKFLQLENAFDQRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSE 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVVGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDISNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + ++ + LY++ ++ YI NTL Sbjct: 297 LIGKALAADLIDPETGEVLAVANDEITEELLAKFDIHGVKQLTTLYINELDQGGYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D++ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETVDQQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQHSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD+DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDKDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D+IADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLIADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ +D D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRQDLGDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P + W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1017 KLAKGSEITTEYLAGLPSKHDWFDIRLSDEDLAKQLELIKLSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ K S LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRML---KEQRKASELREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GEPFDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|148981195|ref|ZP_01816321.1| DNA-directed RNA polymerase subunit beta [Vibrionales bacterium SWAT-3] gi|145960951|gb|EDK26277.1| DNA-directed RNA polymerase subunit beta [Vibrionales bacterium SWAT-3] Length = 1342 Score = 1623 bits (4203), Expect = 0.0, Method: Composition-based stats. Identities = 706/1367 (51%), Positives = 974/1367 (71%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDRDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALGKSTEEILDLFFDKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E+G+++T+ ++ L++ GV+ + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIE--ANGKVYVETGRRVTARHIRQLEKDGVEHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L + + + + +L+ + +++ ++ +TL Sbjct: 292 IVGKVASKDYINEATGEIIVGANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF ++YDLSTVGR+K N + Sbjct: 352 RADSTVDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSEERYDLSTVGRMKFNSSIER 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEEEERGTLDESDIIEVMKKLIGIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA++E IAQAN+ L E+G+F +EL+ R GE L PR+ +D Sbjct: 592 RRVVDGVVTDEVDYLSAIQEGQFVIAQANTVLTEEGTFADELITARQKGESGLHPRDHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +A Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGMIQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 LPGEPVSRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R QW Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLLSGG-------------YSEAKLDTIGRKQWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQVLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K ++ R FL+KV G I++ DD V + + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELHKFREFLQKVYDLGDTRQKVDIAELSDDQVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGASEALIKELLKLGDLPESGQLKLFDGRTGDSFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|298370599|ref|ZP_06981914.1| DNA-directed RNA polymerase, beta subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281209|gb|EFI22699.1| DNA-directed RNA polymerase, beta subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 1392 Score = 1623 bits (4203), Expect = 0.0, Method: Composition-based stats. Identities = 697/1398 (49%), Positives = 956/1398 (68%), Gaps = 42/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLDVPFLLATQIDSYAKFLQLENAFDQRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSE 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVVGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDISNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + ++ + LY++ ++ YI NTL Sbjct: 297 LIGKALAADLIDPETGEVLAVANDEITEELLAKFDIHGVKQLTTLYINELDQGGYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D++ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETADQQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 +V+ + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEVQQQSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD+DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDKDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D+IADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLIADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ +D D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRQDLGDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + +S++ ++ P + W+ + DE + + +E +K+ + + ++ ++ K +K Sbjct: 1017 KLAKGSEISTEYLAGLPSKHDWFDIRLSDEDLAKQLELIKLSLQQKREEADELYEIKKKK 1076 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1077 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1136 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ K S LR FL K+ Sbjct: 1137 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRML---KEQRKASELREFLNKLYNGS 1193 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA-----------DL 1228 E + D+ ++ +A + G ++PVFDGA E I ML +A Sbjct: 1194 GKKEDLDALTDEEIIELAFNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGF 1253 Query: 1229 DES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 ++S Q LYDG +GEPFDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 NDSKTQITLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1313 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PESF Sbjct: 1314 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMYENIVKGEHKIDAGMPESF 1373 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1374 NVLVKEIRSLGLDIDLER 1391 >gi|91790275|ref|YP_551227.1| DNA-directed RNA polymerase subunit beta [Polaromonas sp. JS666] gi|123059302|sp|Q123G3|RPOB_POLSJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|91699500|gb|ABE46329.1| DNA-directed RNA polymerase subunit beta [Polaromonas sp. JS666] Length = 1370 Score = 1623 bits (4202), Expect = 0.0, Method: Composition-based stats. Identities = 698/1375 (50%), Positives = 966/1375 (70%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG ++ +P L+++QK +Y FL + AP +R EGLQAAF++ Sbjct: 1 MAYSYTERKRIRKSFGNRESVLTVPYLLQMQKDAYTAFLQADRAPQKRTVEGLQAAFENA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AKS 121 FPI + +G ++F+ Y P FDV +C R LT+A ++ ++LI++D + T +K Sbjct: 61 FPIVSHNGFVEMKFIEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKV 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 VKEVKEQEVYMGEVPLMTDKGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G++ E IL+ F+ + Sbjct: 181 ARIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLNPESILANFFVFDHFRLM 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 A M G + D +G+ V+ K++T + L++ G + + D Sbjct: 241 DSGAQMEFVAE-RMRGEVARFDITD-KSGKVVVAKDKRITVRHTRELEQSGTTTISVPED 298 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G VA++IV+ ETGEI +A D + E L+++ + ++D+ +LY + ++ AYI T Sbjct: 299 FLVGRVVAKNIVDAETGEIIAKANDELTELLLKKLRLAGVQDLQVLYTNELDQGAYISQT 358 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N R+ Sbjct: 359 LRADETADEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSKVGRMKFNARVG 418 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + EDI+A++KILVDLRNG G +DDID+LGNRRVR VGE+ +NQYR GL R Sbjct: 419 RDDSTGPMVMTNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLAR 478 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N LS ITH RR+ Sbjct: 479 IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRV 538 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIETP Sbjct: 539 SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETP 598 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V D K+T+ + YLSA+EE IAQAN+ LD+ G+ T +LV R GE +LV E+I Sbjct: 599 YRRVVDSKITDQIDYLSAIEEGKYVIAQANALLDDSGTLTGDLVSARENGESVLVGAERI 658 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SP Q+VS+AASL+PFLE+DD+NR LMG NMQRQAVP+L+ E FVGTG+E V A Sbjct: 659 QYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKAFVGTGIERVSAV 718 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA RIV+R + + GVDIY L+K+QRSNQNT ++QRP+ Sbjct: 719 DSGTVVTANRGGVVDYVDATRIVVRVNDAEALAGEVGVDIYNLIKYQRSNQNTNIHQRPI 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK+GD++ + D+IADG STD+G+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +TS Sbjct: 779 VKIGDKLAKGDVIADGASTDIGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD LVGK+TPK Sbjct: 839 IHIEELVVMARDTKLGSEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV G GTV+DV++F R GI +++R+ + Sbjct: 899 GETTLTPEEKLLRAIFGEKASDVKDTSLRVSQGSQGTVIDVQVFTREGIVRDKRAQQIID 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ I++ + + R+ ++L G+ A GPK K T + +++ + W Sbjct: 959 DELKRFRLDLNDQLRIVEADAFDRIEKLLNGKVANGGPKKLAKGTKIDKAYLADVEKYHW 1018 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + D++V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV++A+K Sbjct: 1019 FDIRPADDEVASQLESIKNAMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK 1078 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1079 RRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHL 1138 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA GLG++I ++ +A ++ LR F++ + E +++ D VL +A Sbjct: 1139 GWAAKGLGQRIGDML---QAEAKVAELRKFMDTLYNKSGRVEDLANLSDTDVLEMARNLT 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLD----------ESGQSILYDGLTGEPFDRPVTV 1251 +GVP +TPVFDGA EE I +ML++A D Q+ LYDG TG+ F+R TV Sbjct: 1196 TGVPFATPVFDGASEEDIMTMLKLAYPDDIAKAKGLTATRTQAQLYDGRTGDQFERTTTV 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY+++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y L Sbjct: 1256 GYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYESIV G G PESFNVLVKE+++LG+ I+LE S Sbjct: 1316 QEMLTVKSDDVQGRTKVYESIVKGEHAITAGMPESFNVLVKEIRSLGIDIELERS 1370 >gi|119773347|ref|YP_926087.1| DNA-directed RNA polymerase subunit beta [Shewanella amazonensis SB2B] gi|158513005|sp|A1S211|RPOB_SHEAM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|119765847|gb|ABL98417.1| DNA-directed RNA polymerase [Shewanella amazonensis SB2B] Length = 1342 Score = 1623 bits (4202), Expect = 0.0, Method: Composition-based stats. Identities = 701/1366 (51%), Positives = 968/1366 (70%), Gaps = 26/1366 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D GL+AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKF----TDQDPTGERGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR+++FD + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLFDREAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +++IL F+ ++ ++ + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATIILRALDFSTQDILDIFFERVDFTIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + D + G V+E G+++T+ ++ L++ L + + Sbjct: 235 DSLVMKLLPERL-RGETASYDIKDAE-GNIVVEKGRRITARHIRQLEKTNTTELEVPVEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D ++ +TGE+ + A + I + L ++ + I+DI LY++ +++ AYI +TL Sbjct: 293 IVGKIAAQDYIDPDTGEVLVTANNEIRLEDLAQLSLAGIKDISTLYINELDHGAYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL + Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLEI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + +DI+A++K ++++RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 ADDVGTGVLSNDDIVAVMKKIIEIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLATFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+DV YLSA+EE IAQAN LD +G EE V CR GE + I Sbjct: 593 RKVVDGVVTDDVEYLSAIEEGRYVIAQANIELDGEGRILEEQVACRHKGESTFMRASDIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERALAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + AKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVAAKRGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +VGD + R D++ADGPSTDLGDLALG+NM VAFMPW+GYNFEDS+LISER+V +D FT+I Sbjct: 773 QVGDPIVRGDVLADGPSTDLGDLALGQNMRVAFMPWNGYNFEDSILISERVVQDDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V+GTV+DV++F R G++K++R+I +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRAIEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ + SR +L + + PR + Sbjct: 953 HIAQARKDLSEEFKILEEGVLSRARNLLLAGG-------------YTQAQLDAIPRKELL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q+E K+ + +F++K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 TQVIDDETKQTELEQLAEQHEELKADFDKKFEHKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQ+ E H+G Sbjct: 1060 TIQPGDKMAGRHGNKGVISKICPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHMG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G +I++++ + + +++ LR ++++ G I + D+ V+R+A+ Sbjct: 1120 AAAKGIGNRIQAMLEEQR---EVAELRGYIKQAYDLGETQQKVDIESFTDEEVIRLAKHL 1176 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K G+P +TP FDGA E+ I ML +A L SGQ L+DG TG F+R VTVGY+YMLKLN Sbjct: 1177 KDGLPTATPAFDGAKEKEIKQMLELAGLPTSGQLRLFDGRTGNAFEREVTVGYMYMLKLN 1236 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1297 DVNGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQE 1342 >gi|224827271|ref|ZP_03700365.1| DNA-directed RNA polymerase, beta subunit [Lutiella nitroferrum 2002] gi|224600560|gb|EEG06749.1| DNA-directed RNA polymerase, beta subunit [Lutiella nitroferrum 2002] Length = 1391 Score = 1622 bits (4201), Expect = 0.0, Method: Composition-based stats. Identities = 702/1397 (50%), Positives = 959/1397 (68%), Gaps = 41/1397 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + + D+R GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRDSVLDVPFLLATQIDSYTEFLQLGVPIDQRKEAGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A L+F Y P FDV +C R +TYA PL+ +RL + D + + Sbjct: 61 FPIVSHNGYARLDFAHYILGEPPFDVQECQLRGITYASPLRARIRLTILDK--ESSKPVV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT +G+F+I G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTTNGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++ RIDRRRK+PVT L ALG + E+ILS FY + Sbjct: 179 RVIPYRGSWLDFEFDPKDHLYFRIDRRRKMPVTILLKALGYNEEQILSEFYNTDTFYLGN 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D AD + G +V D G+ ++ K++T+ ++ + + + + SD Sbjct: 239 DGVHMK-VVADRLKGEVAKFDIVAPD-GKLIVAKDKRITAKHIRDIVAANLDRIEVPSDA 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A +VN ++GE+ A + I E+ L ++ +EI + +L+ + ++ +YI TL Sbjct: 297 LLGKMLARAVVNTDSGEVIARANEEISEEILAKLALAEIPQVDVLFTNDLDQGSYIAQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +DR A + IYR+MRPG+ T E +F LFF D YDLS VGR+K N R Sbjct: 357 RVDDIQDRLQARVAIYRMMRPGEPPTEDAVEQLFQRLFFSPDTYDLSRVGRMKFNTRTYQ 416 Query: 423 DTPDDVR---------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGN 461 DD + EDI+++I IL +L+NG+G +DDID+LGN Sbjct: 417 YKFDDKTPEWFKTLIGEKFAERRDVADATLTTEDIVSVIAILCELKNGRGEVDDIDHLGN 476 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGE+ +NQ+R GL+R+ER++KER++ + D++MP DLINAKPV +A+ EFF SSQ Sbjct: 477 RRVRSVGELAENQFRAGLVRVERAVKERLNQAESDNLMPHDLINAKPVSAAIKEFFGSSQ 536 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIG Sbjct: 537 LSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 596 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL+ +AR N +GF+ETPYRKV +GKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 LINSLSVYARTNEFGFLETPYRKVIEGKVTMEIDYLSAIEEGRYVIAQANAELDSDGTLI 656 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 +ELV CR GE IL +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAV Sbjct: 657 DELVTCREKGETILATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAV 716 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDI 761 P L+ E PFVGTG+E VA SG +VA+R G+V+ VDA RIV+R + + GVDI Sbjct: 717 PCLRPEKPFVGTGIERSVAVDSGTTVVARRGGVVDYVDANRIVVRVNDEEALAGEVGVDI 776 Query: 762 YRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGY 821 Y L KF RSNQNT +NQRP+VK+GD++ R D++ADG STDLG+LALG+NM +AFMPW+GY Sbjct: 777 YNLTKFTRSNQNTNINQRPVVKMGDKIARGDVVADGASTDLGELALGQNMTIAFMPWNGY 836 Query: 822 NFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGI 881 NFEDS+LISE++V+ED +TSIHIEE V+ARDTKLGPEEITRDIPN+SE +D+ GI Sbjct: 837 NFEDSILISEKVVAEDRYTSIHIEELSVVARDTKLGPEEITRDIPNLSERMAGRLDDSGI 896 Query: 882 ICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVD 941 + +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G++GTV+D Sbjct: 897 VYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGMTGTVID 956 Query: 942 VRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG 1001 V++F R GI++++R+ S+ +++ D +D+ I D + +SR+ ++ G+ A GPK Sbjct: 957 VQVFTREGIERDKRAQSIIDAELKRYRLDLNDQLRIFDNDAFSRIERLIMGKVANGGPKR 1016 Query: 1002 FKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 K T + + + P + W+ + DE + + +E +K + + +F++K K+ Sbjct: 1017 LAKGTAIDREYLDGLPSKHDWFDIRMADEDIAKQLELIKESLAQKREEFDLKFEDKKRKL 1076 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GD++PPGV ++VKV++A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVDI Sbjct: 1077 TQGDELPPGVQKMVKVYLAVKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMGDGRPVDI 1136 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLGWA G+G+++ ++ +A DI R +LE+V Sbjct: 1137 VLNPLGVPSRMNIGQILEVHLGWAGKGIGEQVNRMLQSQRAVADI---RGYLERVYNQTG 1193 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS------ 1234 E+I+ D+ +L +A G+P +TPVFDGA E I ML +A DE Q+ Sbjct: 1194 KPEEIAAMSDEEILDLASNLAKGMPFATPVFDGAKEAEIKMMLDLAYPDEDPQTDLLDFN 1253 Query: 1235 ------ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 L+DG +GE FDR VTVG ++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1254 ESKTQMTLFDGRSGEAFDRKVTVGVMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQ 1313 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYE+IV G + G PESFN Sbjct: 1314 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKVYENIVKGEHKIDAGMPESFN 1373 Query: 1349 VLVKEMQALGLSIDLEN 1365 VLVKE+++LGL IDLE Sbjct: 1374 VLVKEIRSLGLDIDLER 1390 >gi|312882834|ref|ZP_07742567.1| DNA-directed RNA polymerase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309369526|gb|EFP97045.1| DNA-directed RNA polymerase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 1342 Score = 1622 bits (4201), Expect = 0.0, Method: Composition-based stats. Identities = 700/1367 (51%), Positives = 970/1367 (70%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++VRIDRRRK+P + L ALG +EE+L F+ KI + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTTEEVLDIFFEKINFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E+G+++T+ ++ L++ V + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIE--ANGKTYVETGRRVTARHIRQLEKDSVDHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G ++D +N TGEI + A I ++L + + + + +L+ + +++ ++ TL Sbjct: 292 IVGKVASKDYINESTGEIIVAANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N + Sbjct: 352 RIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIER 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + ++DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EDAQEQGTLDEQDIIEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N +GF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNDFGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT++V YLSA++E IAQAN+ L E G+F+EEL+ R GE L PRE +D Sbjct: 592 RRVVDGVVTDEVDYLSAIQEGQYVIAQANTILTEQGTFSEELITARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +A Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG V+KR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVSKRGGVIQSVDASRIVVKVNEDELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EE+T DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGAEEVTADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + + R +W Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLIDGG-------------YSEERVDAIDRKKWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + D+ Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELTLDDDAQQTQLEQLAEQYDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDDKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K +I+ R FL++V G +S D V+ + Sbjct: 1119 LAAKGIGDKINQMV---KEQQEIAKFRDFLQRVYDLGDTRQKVDVSSLSDAEVVTLVNNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E++I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGASEKSIKELLKLGDLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|209395131|gb|ACI45386.1| RNA polymerase subunit B [Verminephrobacter sp. At4] Length = 1370 Score = 1622 bits (4201), Expect = 0.0, Method: Composition-based stats. Identities = 688/1375 (50%), Positives = 953/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG ++++P L+++QK +Y FL + AP +R EGLQAAF + Sbjct: 1 MAYSYTERKRIRKSFGTRDSVLEVPYLLQMQKDAYTAFLQADTAPLKRSVEGLQAAFDAA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AKS 121 FPI + +G + F Y P FDV +C R LTYA ++ ++LI++D + T +K Sbjct: 61 FPIVSHNGFVEMRFTEYNLAKPAFDVRECQTRGLTYASAVRAKVQLIIYDRESSTTQSKV 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 VKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKGHSSGKLLFS 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A+G++ E IL+ F+ + Sbjct: 181 ARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDSFRLM 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 A L G + D +G+ ++ K++T ++ L++ G + + D Sbjct: 241 DSGAQMEFVAERL-RGEVARFDITD-KSGKVIVAKDKRVTVRHIRELEQSGTTHVSVPED 298 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G VA IV+ +TGEI +A D + E L+++ + + D+ +Y + ++ YI T Sbjct: 299 FLVGRIVARGIVDADTGEILAKANDELTEALLKKLRGAGVPDVQCIYTNELDQGPYISQT 358 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L TD +D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N ++ Sbjct: 359 LRTDDTQDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKIG 418 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + EDI+A++KILVDLRNG G +DDID+LGNRRVR VGE+ +NQYR GL R Sbjct: 419 RAESTGAMVLSNEDILAVVKILVDLRNGHGEVDDIDHLGNRRVRCVGELAENQYRTGLAR 478 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH RR+ Sbjct: 479 IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRV 538 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIETP Sbjct: 539 SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETP 598 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V KV+ND+ YLSA+EE IAQAN+ LD+DG T ELV R GE IL +++ Sbjct: 599 YRRVVGAKVSNDIDYLSAIEEGKYVIAQANAVLDKDGHLTGELVSAREKGESILCAADRV 658 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SP Q+VS+AASL+PFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A Sbjct: 659 QYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVAAV 718 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R GIV+ VDA RIV+R + + GVDIY L+K+QRSNQNT ++QRP+ Sbjct: 719 DSGTVVTATRGGIVDYVDATRIVVRVNDAEAAAGEVGVDIYSLIKYQRSNQNTNIHQRPI 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD + + D+IADG STDLG++A+G+NML+AFMPW+GYN+EDS+LISER+V++D +TS Sbjct: 779 VKKGDRLVKGDVIADGASTDLGEIAIGQNMLIAFMPWNGYNYEDSILISERVVAQDRYTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD LVGK+TPK Sbjct: 839 IHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV G G V+DV++F R GI +++R+ + Sbjct: 899 GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGIVIDVQVFTREGIPRDKRAQQIID 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ I++ + + R+ ++L G+ A GP K + ++ + W Sbjct: 959 DELKRFRLDLNDQLRIVEADAFDRIEKLLTGRVANGGPHKLAKGAQIDRAYLATVEKFHW 1018 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + +++V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV++A+K Sbjct: 1019 FDIRPAEDEVAAQLESIKNALEQTRHGFDLGFEEKRKKLTQGDELPAGVLKMVKVYLAVK 1078 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMN+GQ+ E HL Sbjct: 1079 RRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPADIVLNPLGVPSRMNIGQVLEVHL 1138 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G++I L+ + +S LRSFLE+V + E ++ D +L +A + Sbjct: 1139 GWAGKGIGQRIGDLL---QQQAKVSELRSFLEEVYNSRGRKEDLTQLSDADLLSMAANLQ 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDE----------SGQSILYDGLTGEPFDRPVTV 1251 GVP +TPVFDGA E I ML +A DE Q+ LYDG +G+ F+RP T+ Sbjct: 1196 QGVPYATPVFDGASEAEIKDMLALAYPDEIARRKGLTPSRTQAYLYDGRSGDRFERPTTI 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVL Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYESIV G E G PESFNVLVKE+++LGL I+LE + Sbjct: 1316 QEMLTVKSDDVAGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERA 1370 >gi|218710879|ref|YP_002418500.1| DNA-directed RNA polymerase subunit beta [Vibrio splendidus LGP32] gi|218323898|emb|CAV20259.1| DNA-directed RNA polymerase beta chain [Vibrio splendidus LGP32] Length = 1374 Score = 1622 bits (4200), Expect = 0.0, Method: Composition-based stats. Identities = 706/1367 (51%), Positives = 970/1367 (70%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 33 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 88 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 89 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDRDAPAG--TV 146 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 147 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 206 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 207 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALGKSTEEILDLFFDKVNFEVKD 266 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E+G+++T+ ++ L++ GV+ + + + Sbjct: 267 QTLLMELVP-DRLRGETASFDIE--ANGKTYVETGRRVTARHIRQLEKDGVEHIEVPVEY 323 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + A+D +N TGEI + A I ++L + + + + +L+ + +++ ++ +TL Sbjct: 324 IVEKIAAKDYINEATGEIIVGANQEISLEALANLSQAGHKTLEVLFTNDLDHGPFMSDTL 383 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLSTVGR+K N + Sbjct: 384 RADSTVDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSEDRYDLSTVGRMKFNSSIER 443 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 444 EEEEERGTLDESDIIEVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 503 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 504 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 563 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 564 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNDYGFLETPY 623 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT +V YLSA++E IAQAN+ L E+G+F +EL+ R GE L PR+ +D Sbjct: 624 RRVVDGVVTEEVDYLSAIQEGQFVIAQANTILTEEGTFADELITARQKGESGLHPRDHVD 683 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E +A Sbjct: 684 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERNIAVD 743 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 744 SGVTAVAKRGGQVQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTV 803 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 804 LPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 863 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 864 HIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 923 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 924 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 983 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R QW Sbjct: 984 QLKEAKKDLTEEFQILEGGLLNRVKAVLLSGG-------------YSEAKLDTIGRKQWL 1030 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1031 EQVLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1090 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1091 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1150 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K ++ R FL+KV G I++ DD V + + Sbjct: 1151 LAAKGIGDKINQMV---KEQQELHKFREFLQKVYDLGDTRQKVDIAELSDDQVRTLIKNL 1207 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1208 RGGLPIATPVFDGASESLIKELLKLGDLPESGQLKLFDGRTGDSFERPVTVGYMYMLKLN 1267 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1268 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1327 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1328 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1374 >gi|115378469|ref|ZP_01465628.1| DNA-directed RNA polymerase, beta subunit [Stigmatella aurantiaca DW4/3-1] gi|310822260|ref|YP_003954618.1| bifunctional DNA-directed RNA polymerase subunit beta-beta' [Stigmatella aurantiaca DW4/3-1] gi|115364531|gb|EAU63607.1| DNA-directed RNA polymerase, beta subunit [Stigmatella aurantiaca DW4/3-1] gi|309395332|gb|ADO72791.1| Bifunctional DNA-directed RNA polymerase subunit beta-beta' [Stigmatella aurantiaca DW4/3-1] Length = 1408 Score = 1622 bits (4199), Expect = 0.0, Method: Composition-based stats. Identities = 736/1376 (53%), Positives = 1000/1376 (72%), Gaps = 26/1376 (1%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 RVRK F K +IIDIP+LI +QK SY+ FL +IAP++R + GLQ FKSVFPI F+ Sbjct: 10 RVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAPEKREDLGLQGVFKSVFPIRDFNET 69 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 + LEFVSY + PK+DVD+C R +TY+ P+K+ +RL+V+D DE TGA+SI+D+KEQ +Y Sbjct: 70 SSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVY 129 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 G++PLMT++GTF+I G +R+VVSQLHRSPG FDHDKG++ SGKLLY RIIP +G W Sbjct: 130 FGEIPLMTQNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNARIIPYRGSW 189 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGM--------------DSEEILSTFYPKIV 237 +D EFD KD+++VRIDRRRK+P T + ALG +EEIL+ +Y Sbjct: 190 IDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVQDTAKKNPLTFSGSTEEILNYYYATET 249 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 + +L+ G + + + TG+ +++ +K T +K L+ +K L Sbjct: 250 IYLTSNVDFEKSVELELLPGQRATRDI-KTKTGDLIVKKNRKFTRAAIKKLEAAKMKTLP 308 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 I +D L A D+V+ TGE+ +E + + ++ ++E+ +I++ +L++D++N Y Sbjct: 309 IDADELFTKVSAYDVVDENTGEVILECNEEVSQEKVDELLKRDIKEFKVLFIDNLNVGPY 368 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 +R TL+ DK + + A+++IYR +RPGD T A ++F+ LFF+ ++YDLS VGR+K+N Sbjct: 369 LRETLMMDKIETPEQAIMEIYRRLRPGDPPTPETATNLFSNLFFNPERYDLSKVGRLKLN 428 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 + +L+ P D + + K DI+ +I+ LVDL+NGKGTIDDID+LGNRRVR+VGE+L+NQYR+ Sbjct: 429 FKFSLEEPLDGQILTKRDILEVIRYLVDLKNGKGTIDDIDHLGNRRVRAVGELLENQYRI 488 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL+RMER+IKER+S +I+++MP DLINAKPV + + EFF SSQLSQ + N LS +TH Sbjct: 489 GLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEVTH 548 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL+++ARVN +GF Sbjct: 549 KRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTYARVNEFGF 608 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 +ETPYRKV G VT DV + SA+EEE I QAN+ D+ G F LV R GE + Sbjct: 609 VETPYRKVEAGSVTADVAFYSALEEEKHTIGQANAETDKKGKFVNALVSSRRGGEFVQAK 668 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 E +D +D SP Q+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+ AP VGTG+E+ Sbjct: 669 AEDVDLMDVSPNQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAPLVGTGIEA 728 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 +VA+ SG VA+R G+VE VDA RIV+++ + L +S VDIY L+K+QRSNQNTC+ Sbjct: 729 IVARDSGVTCVARRDGVVESVDASRIVVKADSQAALSDVSSEVDIYNLLKYQRSNQNTCL 788 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQ+P+V+ GD VR+ D+IADGP+T+ G+LALG+N++VAFMPW GYNFEDS+LISER++ + Sbjct: 789 NQKPIVRKGDRVRKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSILISERILRD 848 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEEFE +ARDTKLG EEITRDIPNV EE LK++DE GII +GAEV PGD+LVG Sbjct: 849 DVFTSIHIEEFECIARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEVKPGDVLVG 908 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 KITPKGE+ ++PEEKLLRAIFGEKA DVRD+SLRVP GV GTV++ ++F+R G++K+ER+ Sbjct: 909 KITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVQGTVINAKVFSRKGVEKDERA 968 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS------GPKGFKKSTVLSS 1010 +E + L +D++DE +L + +SRL +L G+ A G KK +L+ Sbjct: 969 KQIESAEEAKLLKDQNDEIKVLQDSAFSRLRNLLRGKEAQGKLVDDKGKILLKKGDILND 1028 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 +L++ P W + +V D + + + E +K ++ F KI +I+ GD++PPGV Sbjct: 1029 ELLATVPYKYWAEISVGDP-LDGRIRDILKSLEDTKEAVKLAFGEKIARIKKGDELPPGV 1087 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +++VKV+VA+KR + GDKMAGRHGNKG+VSRI P EDMP+L DG PVDIVLNPLGVPSR Sbjct: 1088 IKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRIHPEEDMPYLDDGRPVDIVLNPLGVPSR 1147 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MN+GQI ETHLGWA G+G++++ I + + L+ L+ V + + + D Sbjct: 1148 MNIGQILETHLGWAAKGVGEQLQRYIEENYSG---EQLKKQLKTVYDDKAFGDFVDALPD 1204 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 D V + ++ K G+ V+TPVFDGA E I+S+ A L +GQ +L+DG TGEPFD+ VT Sbjct: 1205 DEVKILCQRLKKGIHVATPVFDGAREPEIHSLFDEARLPRTGQMVLFDGRTGEPFDQNVT 1264 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG +YMLKL+H+V +K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY Sbjct: 1265 VGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYT 1324 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 LQE LT+KSDDVVGRTR+YE+IV G++ E+G PESFNVL+KE+Q+L L ++L S Sbjct: 1325 LQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLLKELQSLALDVELLES 1380 >gi|78099430|gb|ABB20851.1| RNA polymerase subunit B [Acinetobacter berezinae] Length = 1362 Score = 1622 bits (4199), Expect = 0.0, Method: Composition-based stats. Identities = 709/1374 (51%), Positives = 964/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMHAPYLLAIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R T+A P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTFAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ VRIDRRRK+ T L AL +E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVFVRIDRRRKLLATVILRALNYSNEQILNMFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + D D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDIADND-GKVIVEQGKRINARHVRQMEAAGLTKLSVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDI + GE+ A ++ + L +I ++ IL+ + ++ +++ +TL Sbjct: 295 LYERITAEDITLRD-GEVIA-ANTILSHEVLVKIAEGGVKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF +++YDLS VGR+K N RL Sbjct: 353 RADTTTGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSTERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DII ++K LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNDDIIDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER++ + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLNQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYRKV DG+VT+DV YLSA+EE IAQA+S +D+DG TEE V R GE + Sbjct: 593 FGFLETPYRKVVDGRVTDDVEYLSAIEEVGTVIAQADSGVDKDGHLTEEFVSVRHQGEFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA SG ++AKR G +E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVAHDSGVCVIAKRGGRIEFVDASRVVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVSLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV+ GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVSAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRV S V GTV+DV++F R GI+K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVSSSVKGTVIDVQVFTRDGIEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ L+ D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEFKIFEEAARERIVRLLKGQESNGGGTT-KRGDKLTEDVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 NLELVDLLEVQPADEGIAERLTQIQVFLKEKSHEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP G PVD+VLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDIHGVPVDVVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI ++ + + + LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGMAAKGLGDKIDKMMKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ + GVP++TPVFDGA+E I +L + + +GQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LVLSGNLRKGVPLATPVFDGAEEGQIKELLELGGISRTGQTVLYDGRTGERFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|257454924|ref|ZP_05620172.1| DNA-directed RNA polymerase, beta subunit [Enhydrobacter aerosaccus SK60] gi|257447634|gb|EEV22629.1| DNA-directed RNA polymerase, beta subunit [Enhydrobacter aerosaccus SK60] Length = 1372 Score = 1621 bits (4198), Expect = 0.0, Method: Composition-based stats. Identities = 708/1380 (51%), Positives = 972/1380 (70%), Gaps = 19/1380 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P ++D+P L+ +Q SY+ FL N P R N GLQAAF S+ Sbjct: 1 MAYSYTEKKRIRKSFAKLPTVMDVPYLLAIQVDSYEQFLQENKKPKGRENIGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS- 121 FPI + +G A L+FV Y P+FDV +C+ R TYA PL++ +RL++ D D Sbjct: 61 FPIESHTGNAELQFVEYYLGTPEFDVRECILRGSTYAAPLRVKIRLVIKDKDVKDKDAKA 120 Query: 122 -IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 IKDI+EQS+YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG++ SGK+LY Sbjct: 121 AIKDIREQSVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 RIIP +G W+D EFD+KD++ RIDRRRK+ T L A+GM++++IL FY K + Sbjct: 181 NARIIPYRGSWLDFEFDAKDLVFARIDRRRKLLATVILHAIGMNTQQILDAFYEKTHVYK 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + L D + G +V D GE ++E GK++ + ++ +++ G+ L + Sbjct: 241 GDEQFEIDLV-TDRLRGEMAQFEIVSPD-GEVIVEQGKRINARAIRKIEQAGMTKLPVPD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L +A+DIV + E+ A ++D ++L +I +++I++ IL+ + +++ +YI + Sbjct: 299 EYLYERILAQDIVVDD--EVIARANQLLDHETLVKISNNDIKEFDILFTNDIDHGSYIAD 356 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D R++AL++IY+VMRPG+ T AE +F +FF++D+YDLS VGR+K N RL Sbjct: 357 TLRADTAMSREEALIEIYKVMRPGEPPTLDTAEKLFESMFFNADRYDLSNVGRMKFNRRL 416 Query: 421 NL--------DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLK 472 D + + EDII ++K+L+++R+G+G +DDID+LGNRRVRSVGEM + Sbjct: 417 GRAYEPTNDPDVQRERSVLTNEDIIDVLKMLIEIRDGRGVVDDIDHLGNRRVRSVGEMTE 476 Query: 473 NQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSL 532 NQ+R+GL+R+ER++KER+SS + D++ PQDLIN+KPV +A+ EFF SSQLSQ + N L Sbjct: 477 NQFRVGLVRVERAVKERLSSAETDNLSPQDLINSKPVAAAIKEFFGSSQLSQFMDQNNPL 536 Query: 533 SRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARV 592 S ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +A+ Sbjct: 537 SEITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLAVYAKT 596 Query: 593 NAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGE 652 N +GF+ETPYRKV DGKVT+++ YLSA+EE IAQA+S +D+ G TE+ V R GE Sbjct: 597 NEFGFLETPYRKVVDGKVTDEIEYLSAIEEVGTVIAQADSPIDQSGQLTEDYVSVRNYGE 656 Query: 653 EILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVG 712 + + EK+ +D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+++ P VG Sbjct: 657 FVRMAPEKVTHMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVG 716 Query: 713 TGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 TGME VA+ SG + AKR G++ VDA R+V++ E ++ +G+DIY L+K+ RSNQ Sbjct: 717 TGMERHVARDSGVCVTAKRGGVIMDVDASRVVVKVNEDEMQAGEAGIDIYNLIKYTRSNQ 776 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 NTC+NQR +V GD + R DI+ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER Sbjct: 777 NTCINQRIIVNQGDVIARGDILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILLSER 836 Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V ED FT+IHI+E +ARDTKLG EEIT DIPNV E L N+DE GI+ +GAEV GD Sbjct: 837 VVKEDRFTTIHIQELTCVARDTKLGTEEITADIPNVGEAALANLDEAGIVYIGAEVQGGD 896 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDK 952 ILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPS GTV+DV++F R G++K Sbjct: 897 ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDTSLRVPSSTKGTVIDVQVFTRDGVEK 956 Query: 953 NERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDL 1012 + R+ ++E+ Q++ +D +E I + R++ +L GQ G G K TVLS D Sbjct: 957 DSRAQAIEKAQLDSYRKDLKEELRIFENAARGRIISLLDGQTVSGG-AGLKSGTVLSEDS 1015 Query: 1013 ISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLR 1072 + + E + + + ++++F K K+ GDD+ GV + Sbjct: 1016 MQDMSLETLLDIQPTQEDTAERLSQIGDFLTDKQKEIDEKFTEKKRKLTAGDDLTHGVQK 1075 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 +VKV++A+KR IQ GDKMAGRHGNKG+VSRI+P EDMP+ ++G PVDIVLNPLGVPSRMN Sbjct: 1076 IVKVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPIEDMPYDENGNPVDIVLNPLGVPSRMN 1135 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDD 1191 VGQI ETHLG A GLG KI +I K ++ LR FL+K+ G + DD Sbjct: 1136 VGQILETHLGGAARGLGIKIDEMI---KQQAAVAELRDFLDKIYNQIGGEQVDLGSISDD 1192 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 ++ +++ ++GVP+ T VFDGA E+ I S+L +A + SGQ +L+DG TG+ FDRPVTV Sbjct: 1193 EIIAMSKNLRAGVPMGTAVFDGAKEQQIKSLLELAGMPTSGQQVLFDGRTGQQFDRPVTV 1252 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1253 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1312 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNS 1371 QEMLT+KSDDV GRTR+Y++IV G G PESFNVL KE+++LG++I+L++ + Sbjct: 1313 QEMLTVKSDDVEGRTRMYKNIVDGEQNMSAGMPESFNVLTKEIKSLGINIELKDHSKSKN 1372 >gi|116748984|ref|YP_845671.1| DNA-directed RNA polymerase subunit beta [Syntrophobacter fumaroxidans MPOB] gi|158512347|sp|A0LII4|RPOB_SYNFM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|116698048|gb|ABK17236.1| DNA-directed RNA polymerase, beta subunit [Syntrophobacter fumaroxidans MPOB] Length = 1370 Score = 1621 bits (4197), Expect = 0.0, Method: Composition-based stats. Identities = 752/1365 (55%), Positives = 995/1365 (72%), Gaps = 10/1365 (0%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 RVRK FGK +IIDIP+LI++QK SY+ FL ++ + R GLQ FKSVFPI FSG Sbjct: 10 RVRKNFGKIHKIIDIPNLIQMQKESYELFLQRDVPSEARSERGLQEVFKSVFPIEDFSGT 69 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 A LEFV Y F K++V++CL R +TY P+KI +RL+V+DVD+ G +SI+DIKEQ IY Sbjct: 70 ASLEFVQYSFGEVKYEVEECLARGMTYEAPVKIVVRLVVYDVDKEAGTRSIRDIKEQEIY 129 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 G LPLMT +GTF+I G +R++VSQLHRSPGI FDHD+G+ SGK+LY+ RIIP +G W Sbjct: 130 FGTLPLMTDNGTFIINGTERVIVSQLHRSPGIFFDHDRGKTHSSGKILYSARIIPLRGSW 189 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 +D+EFD KDI+++RIDRRRK PVT L ALG +EE+L+ FYP + + Sbjct: 190 LDLEFDPKDILYIRIDRRRKFPVTVLLKALGYATEELLNYFYPSEKIFLKSEAQSEKELN 249 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 D+++G++ ++ TGE +I+ +KL L+ L+E G+ L + S L G +A+D Sbjct: 250 PDILMGSRAPEDILHPQTGEVLIKKNRKLGKQALRRLQEVGINRLPMKSTELIGQVLAQD 309 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 +++ TGEI E D ID L+E + +I +L+++ + + RNTL+ DK ++ Sbjct: 310 VIDYGTGEIVAECNDSIDADMLKEFVERGVGEIELLHLEGQDVSPSFRNTLLMDKVNTQE 369 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 DAL++IYR +RP + T VA FN LFF+ D YDLS VGR+K+N++L L+ P D R + Sbjct: 370 DALIEIYRRLRPSNPPTLEVATEFFNNLFFNPDHYDLSEVGRLKLNLQLGLEVPLDYRTL 429 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 RK+DI+ ++ L+ L++ +G +DDIDNLGNRRVR+VGE+L+NQYR+GL+RMER+IKER++ Sbjct: 430 RKDDILMAVRQLIRLKDSQGPVDDIDNLGNRRVRAVGELLENQYRIGLVRMERAIKERMT 489 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 +++++MP DLINAKPV + V EFF +SQLSQ + N LS ITH RRLSALG GG+ R Sbjct: 490 LQEVEALMPHDLINAKPVSAVVKEFFGTSQLSQFMDQTNPLSEITHKRRLSALGPGGLTR 549 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT 611 RAG E+RDVHPTHYGRICP ET EG NIGL+ SL+++ARVN YGFIETPYRKV Sbjct: 550 ERAGFEVRDVHPTHYGRICPIETPEGPNIGLIVSLSTYARVNPYGFIETPYRKVDGSSAR 609 Query: 612 NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQV 671 DV YL+AM+E+ IAQAN+ LDE G F +LV R AGE ++VP +I ++D SP Q+ Sbjct: 610 KDVSYLTAMDEKEYPIAQANAPLDEKGRFLLDLVSARVAGEPVMVPPNEIRYMDVSPNQL 669 Query: 672 VSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR 731 VS++ASLIPFLE+DD+NR LMG NMQRQAVPL++ AP VGTG+E +VAK SG AIVA+R Sbjct: 670 VSVSASLIPFLEHDDANRALMGSNMQRQAVPLIQTRAPLVGTGIERIVAKDSGVAIVARR 729 Query: 732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRN 791 G+VE VDA RIVIR++E + + SGVDIY+L+KFQRSNQNTC+NQ+PLV+ GD V + Sbjct: 730 TGVVEYVDATRIVIRAIEDNGEMG-SGVDIYKLIKFQRSNQNTCINQKPLVQHGDLVTKG 788 Query: 792 DIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMA 851 IIADGPSTD G+LALGRN++VAFM W GYNFEDS+L+SER+ EDVFTSIHIEEFEV+A Sbjct: 789 QIIADGPSTDHGELALGRNVMVAFMSWGGYNFEDSILVSERIGKEDVFTSIHIEEFEVVA 848 Query: 852 RDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEK 911 RDTKLG E+ITRDIPNV EE LKN+DE GII VGA + P DILVGK+TPKGES +TPEEK Sbjct: 849 RDTKLGKEDITRDIPNVGEEALKNLDESGIIRVGAYIKPNDILVGKVTPKGESQLTPEEK 908 Query: 912 LLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDK 971 LLRAIFGEKA DV+DTSLRVP GV G ++D ++F+R G++K+ER+ ++E ++I L +D+ Sbjct: 909 LLRAIFGEKASDVKDTSLRVPPGVEGIIIDAKVFSRKGVEKDERTKTIEDQEISRLMKDQ 968 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKG-----FKKSTVLSSDLISEYPRSQWWQFAV 1026 DE I+ ++ RL ++L Q + S K KK V + +++ P W Q V Sbjct: 969 RDELEIIFKSTVKRLAKLLENQVSDSAIKDGKKVYIKKGEVFTEEILLNLPSGHWDQLTV 1028 Query: 1027 -QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 +D V +E++ Y +++ F+ KI K++ GD++PPGV+++VKV+VA+KR +Q Sbjct: 1029 AKDPTVSMEIENILANYREQVQLVKSLFEEKIGKLKRGDELPPGVIKMVKVYVAVKRKLQ 1088 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG+VSRILP EDMP+ DGTPVDIVLNPLGVPSRMNVGQ+ ETH+GWA Sbjct: 1089 VGDKMAGRHGNKGVVSRILPAEDMPYFPDGTPVDIVLNPLGVPSRMNVGQVLETHIGWAA 1148 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 G+G ++ ++ + + + + L+++ D + + + +K G+ Sbjct: 1149 KGIGMQLAQMLEECR---ERETMNEKLQRIYNKLEFGTYFKDASERELRGLIPDFKEGIH 1205 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 V++PVFDGA+E I + L A + E+GQS+LYDG TG PFD+PVTVG +YMLKL+H+V D Sbjct: 1206 VASPVFDGAEEAEIRAFLSEAGVSETGQSVLYDGRTGMPFDQPVTVGVMYMLKLHHLVDD 1265 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDDV GR Sbjct: 1266 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWTMEAYGAAYALQEFLTVKSDDVAGR 1325 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 TR+YE IV G++T E G PESFNVLVKE+QAL L + L N Sbjct: 1326 TRMYEKIVKGDNTLEAGLPESFNVLVKELQALALDVRLLEEEEGN 1370 >gi|121609223|ref|YP_997030.1| DNA-directed RNA polymerase subunit beta [Verminephrobacter eiseniae EF01-2] gi|158514001|sp|A1WK55|RPOB_VEREI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|121553863|gb|ABM58012.1| DNA-directed RNA polymerase, beta subunit [Verminephrobacter eiseniae EF01-2] Length = 1370 Score = 1620 bits (4196), Expect = 0.0, Method: Composition-based stats. Identities = 691/1375 (50%), Positives = 956/1375 (69%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FG ++++P L+++QK +Y FL + P +R EGLQAAF + Sbjct: 1 MAYSFTERKRIRKSFGTRDSVLEVPYLLQMQKDAYTAFLQADKEPRKRTIEGLQAAFDAA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AKS 121 FPI + +G ++F+ Y P FDV +C R LT+A ++ ++LI++D + T +K Sbjct: 61 FPIVSHNGFVEMKFIEYNLARPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKV 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +K++KEQ +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 VKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHGSGKLLFS 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G++ E IL+ F+ + Sbjct: 181 ARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRLM 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 L G + D +G+ ++ K++T+ + L++ G + + D Sbjct: 241 DSGAQMEFVPERL-RGEVARFDITD-KSGKLIVAKDKRVTARHTRDLEQSGSTHISVPED 298 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G VA IV+ ++GEI +A D + E L+++ + +R++ +Y + ++ AYI +T Sbjct: 299 FLVGRVVARTIVDADSGEILAKANDELTEALLKKLRSAAVRELQCIYTNELDQGAYISHT 358 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L +D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N R+ Sbjct: 359 LRSDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNARIG 418 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + EDI+A++KILVDLRNG G +DDID+LGNRRVR VGE+ +NQYR GL R Sbjct: 419 RDESTGPMVLSNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLAR 478 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH RR+ Sbjct: 479 IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRV 538 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIETP Sbjct: 539 SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETP 598 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V G VTND+ YLSA+EE IAQAN+ LD++G T +LV R GE IL +++ Sbjct: 599 YRRVVGGMVTNDIDYLSAIEEGKYVIAQANAVLDKEGRLTGDLVSAREKGESILCAADRV 658 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SP Q+VS+AASL+PFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A Sbjct: 659 RYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVAAI 718 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G V+ VDA RIV+R + + GVDIY L+K+QRSNQNT ++QRP+ Sbjct: 719 DSGTVVTATRGGSVDYVDATRIVVRVNDDETVAGEVGVDIYNLIKYQRSNQNTNIHQRPI 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD + + D+IADG STDLG++A+G+NML+AFMPW+GYNFEDS+LISER+VSED +TS Sbjct: 779 VKKGDRLVKGDVIADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVSEDRYTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD LVGK+TPK Sbjct: 839 IHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV G GTV+DV++F R GI +++R+ + Sbjct: 899 GETTLTPEEKLLRAIFGEKASDVKDTSLRVEQGSQGTVIDVQVFTREGIARDKRAQQIID 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ I++ + + R+ ++L G+ A GP K + +S + W Sbjct: 959 DELKRFRLDLNDQLRIVEADAFERIEKLLLGRVANGGPHKLLKGAKIDKPYLSSVEKFHW 1018 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + ++V +E +K E ++ + F+ K +K+ GD++P GVL++VKV++A+K Sbjct: 1019 FDIRPAQDEVAAQLELIKDALEQTRHSFDLAFEEKKKKLTQGDELPAGVLKMVKVYLAVK 1078 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I+P EDMP++ DGTP DIVLNPLGVPSRMN+GQ+ E HL Sbjct: 1079 RRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPADIVLNPLGVPSRMNIGQVLEVHL 1138 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA G+G++I ++ + + LR FL+KV TE ++ D+ ++ +A + Sbjct: 1139 GWASKGIGQRIGDML---QQQAKAAELRKFLDKVYNARGRTEDLAQLCDEELVAMAAHLR 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDE----------SGQSILYDGLTGEPFDRPVTV 1251 G+P +TPVFDGA EE I ML++A DE Q+ LYDG TGE F+RP T+ Sbjct: 1196 HGMPYATPVFDGASEEEIKDMLKIAYPDEIAQRKGLTATRTQAFLYDGRTGERFERPTTI 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAYVL Sbjct: 1256 GYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDV GRT+VYESIV G E G PESFNVLVKE+++LGL I+LE S Sbjct: 1316 QEMLTVKSDDVAGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS 1370 >gi|84393084|ref|ZP_00991850.1| DNA-directed RNA polymerase beta subunit [Vibrio splendidus 12B01] gi|84376336|gb|EAP93218.1| DNA-directed RNA polymerase beta subunit [Vibrio splendidus 12B01] Length = 1342 Score = 1620 bits (4196), Expect = 0.0, Method: Composition-based stats. Identities = 707/1367 (51%), Positives = 970/1367 (70%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDRDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALGKSTEEILDLFFDKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E+G+++T+ ++ L++ GV+ + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIES--NGKTYVETGRRVTARHIRQLEKDGVEHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + A+D +N TGEI + A I ++L + + + + +L+ + +++ ++ +TL Sbjct: 292 IVEKIAAKDYINEATGEIIVGANQEISLEALANLSQAGHKTLEVLFTNDLDHGPFMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLSTVGR+K N + Sbjct: 352 RADSTVDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSEDRYDLSTVGRMKFNSSIER 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEEEERGTLDESDIIEVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT +V YLSA++E IAQAN+ L E+G+F +EL+ R GE L PRE +D Sbjct: 592 RRVVDGVVTEEVDYLSAIQEGQFVIAQANTILTEEGTFADELITARQKGESGLHPREHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E +A Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERNIAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGQVQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 LPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R QW Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLLSGG-------------YSEAKLDTIGRKQWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQVLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K ++ R FL+KV G I++ DD V + + Sbjct: 1119 LAAKGIGDKINQML---KEQQELHKFREFLQKVYDLGDTRQKVDIAELSDDQVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGASESLIKDLLKLGDLPESGQLKLFDGRTGDSFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|163752494|ref|ZP_02159682.1| DNA-directed RNA polymerase, beta subunit [Shewanella benthica KT99] gi|161327613|gb|EDP98809.1| DNA-directed RNA polymerase, beta subunit [Shewanella benthica KT99] Length = 1343 Score = 1620 bits (4195), Expect = 0.0, Method: Composition-based stats. Identities = 698/1364 (51%), Positives = 961/1364 (70%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D G +AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPKVMDIPYLLSIQLDSFKKF----TDQDPTGELGFEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TYA PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGYSELQYVSYKLGEPVFDVKECQIRGITYAAPLRVKLRMVLYDREAAAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+P MT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPQMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L AL +++IL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPASIMLRALDYSTQDILDLFFERVNFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L A L G S + D D G ++E+G+++T+ ++ L++ L + D Sbjct: 235 DSLVMDLVAERL-RGETASYDIKDAD-GSILVENGRRITARHIRQLEKSKTTELEVPIDY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +D ++ +TGE+ + A I + L ++ + I++I L+++ + N AY+ +TL Sbjct: 293 IVGKIAGQDYIDPDTGEVLVSANAEITLEDLAKLSMAGIKEISTLFINDLANGAYMSDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE +F LFF ++YDLS VGR+K N RLN+ Sbjct: 353 RIDPTTNRLEALVEIYRMMRPGEPPTKDAAEGLFQNLFFSEERYDLSKVGRMKFNRRLNI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 GEDEGSGILSKEDIVAVMKNIITIRNGGDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+ + YLSA+EE IAQAN +D++G EE V CR G+ + I Sbjct: 593 RKVEDGVVTDQIDYLSAIEEGRYVIAQANIDIDKNGRLLEEQVACRHKGDSTFMSASDIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E ++A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERIIAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +V+KR G+V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVVSKRGGVVDYVDASRIVVKVDESELCPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGDPVVRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV+ GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVSGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ +Y R +L + PRSQ Sbjct: 953 HIAQAKKDLTEEFKILEEGVYGRARNLLLNAG-------------FEQAQLDAIPRSQLL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 IQTIDDEAKQIELEQLAEQHDELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS+I P EDMP+ ++G P+DIVLNPLGVPSRMN+GQI E H+G Sbjct: 1060 MIQPGDKMAGRHGNKGVVSKINPVEDMPYDENGNPIDIVLNPLGVPSRMNIGQILEVHMG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G +I +++ + + +I + ++ I + DD +LR+A+ K+ Sbjct: 1120 AAAKGIGDQITAMLEEQRQLAEIRAYIKEVYELGDDVLQRVDIDSFTDDEILRLAKNLKA 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E+ I ML +A L SGQ LYDG TG+ FDR VTVGY+YMLKLNH+ Sbjct: 1180 GIPIATPAFDGAKEKEIKEMLTLAKLPTSGQRTLYDGRTGDKFDRQVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1300 NGRTQMYKNIVDGNYQMQPGMPESFNVLLKEIRSLGINIELDQD 1343 >gi|86147869|ref|ZP_01066174.1| DNA-directed RNA polymerase beta subunit [Vibrio sp. MED222] gi|85834296|gb|EAQ52449.1| DNA-directed RNA polymerase beta subunit [Vibrio sp. MED222] Length = 1342 Score = 1620 bits (4195), Expect = 0.0, Method: Composition-based stats. Identities = 706/1367 (51%), Positives = 970/1367 (70%), Gaps = 27/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S+D F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 57 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDRDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L ALG +EEIL F+ K+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALGKSTEEILDLFFDKVNFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L D + G S + G+ +E+G+++T+ ++ L++ GV+ + + + Sbjct: 235 QTLLMELVP-DRLRGETASFDIE--ANGKTYVETGRRVTARHIRQLEKDGVEHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + A+D +N TGEI + A I ++L + + + + +L+ + +++ ++ +TL Sbjct: 292 IVEKIAAKDYINEATGEIIVGANQEISLEALANLSQAGHKTLEVLFTNDLDHGPFMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLSTVGR+K N + Sbjct: 352 RADSTVDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSEDRYDLSTVGRMKFNSSIER 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEEEERGTLDESDIIEVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT +V YLSA++E IAQAN+ L E+G+F +EL+ R GE L PR+ +D Sbjct: 592 RRVVDGVVTEEVDYLSAIQEGQFVIAQANTILTEEGTFADELITARQKGESGLHPRDHVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E +A Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERNIAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTAVAKRGGQVQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 LPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E IL+ + +R+ +L S + R QW Sbjct: 952 QLKEAKKDLTEEFQILEGGLLNRVKAVLLSGG-------------YSEAKLDTIGRKQWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EQVLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G KI ++ K ++ R FL+KV G I++ DD V + + Sbjct: 1119 LAAKGIGDKINQMV---KEQQELHKFREFLQKVYDLGDTRQKVDIAELSDDQVRTLIKNL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TPVFDGA E I +L++ DL ESGQ L+DG TG+ F+RPVTVGY+YMLKLN Sbjct: 1176 RGGLPIATPVFDGASESLIKELLKLGDLPESGQLKLFDGRTGDSFERPVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1296 DVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1342 >gi|170729016|ref|YP_001763042.1| DNA-directed RNA polymerase subunit beta [Shewanella woodyi ATCC 51908] gi|226699448|sp|B1KMZ0|RPOB_SHEWM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|169814363|gb|ACA88947.1| DNA-directed RNA polymerase, beta subunit [Shewanella woodyi ATCC 51908] Length = 1343 Score = 1620 bits (4194), Expect = 0.0, Method: Composition-based stats. Identities = 692/1364 (50%), Positives = 959/1364 (70%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D G +AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKF----TDQDPTGERGFEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+ + L AL +++IL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLAASIILRALDYSTQDILDLFFDRVNFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L A L G S + D++ G ++E G+++T+ ++ L++ L + D Sbjct: 235 DSLVMDLVAERL-RGETASYDIKDVE-GTIIVEKGRRITARHIRQLEKSNTTELEVPVDY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +D ++ +TGE+ + A + + L ++ + I++I LY++ ++N AY+ +TL Sbjct: 293 IVGKISGQDYIDPDTGEVLVSANAEMTLEDLAKLSLAGIKEISTLYINELDNGAYMSDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL + Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLGI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 DDDEGTGILSKEDIVAVMKNIITIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+ V YLSA+EE IAQA LDE+G +EL+ CR G+ + I Sbjct: 593 RKVIDGVVTDQVDYLSAIEEGRYVIAQAIVDLDENGRMMDELIACRHKGDSTFMGAADIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G ++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVVAKRGGYIDYVDASRIVVKVNESELRPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +GD V D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 AMGDPVVTGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 + +D +E IL+ +Y R +L + + PRSQ Sbjct: 953 HVRQAKKDLTEEFQILEEGVYGRARNLLLSAG-------------FNEAQLDAIPRSQLL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ DE Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 SQSIDDEGKQTELEQLAEQHDELKADFDKKFEVKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G P+DIVLNPLGVPSRMN+GQ+ E HLG Sbjct: 1060 TIQPGDKMAGRHGNKGVISKINPVEDMPYDENGNPIDIVLNPLGVPSRMNIGQVLEVHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + + ++ + ++ I + DD V+R+A+ K Sbjct: 1120 AAAKGIGDKIAAMLEEQRELAELRGYIKEVYELGEEVQQRVDIDSFTDDEVVRLAKNLKG 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P +TP FDGA E+ I ML +A L +GQ L+DG TG+ F+R VTVGY+YMLKLNH+ Sbjct: 1180 GIPTATPAFDGAKEKEIKEMLALAGLPTTGQRKLFDGRTGDEFERQVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT +Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1300 NGRTNMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQD 1343 >gi|146329600|ref|YP_001210158.1| DNA-directed RNA polymerase, beta subunit [Dichelobacter nodosus VCS1703A] gi|158513302|sp|A5EX70|RPOB_DICNV RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|146233070|gb|ABQ14048.1| DNA-directed RNA polymerase, beta subunit [Dichelobacter nodosus VCS1703A] Length = 1361 Score = 1619 bits (4193), Expect = 0.0, Method: Composition-based stats. Identities = 690/1366 (50%), Positives = 950/1366 (69%), Gaps = 10/1366 (0%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK F K P +++ P L+ +Q SY+ FL ++ R +GLQ AF+S+F Sbjct: 3 TYSFTEKKRIRKNFSKRPTVLETPYLLSMQIDSYNDFLQQHVPMQSRAKKGLQEAFESIF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI + + L+FV YEF P+FDV +C R +TYA PL++ +RL ++D + T K + Sbjct: 63 PIKSHNEMVELQFVGYEFGKPEFDVRECQLRGVTYAAPLRVRMRLAIYDKN-STKKKLKQ 121 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 ++ +S+YMGD+PLMT DGTFVI G +R++VSQLHRSPG+ F D G+ SGK LY R Sbjct: 122 VVESESVYMGDIPLMTDDGTFVINGTERVIVSQLHRSPGVFFGDDDGQGHSSGKKLYNAR 181 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D+EFD KD+I+ RIDRRRK+ +T L ALG+ ++E+L F+ K + Sbjct: 182 IIPYRGSWLDLEFDVKDLIYCRIDRRRKLLITILLRALGLSNQEMLDIFFSKQTFKLNKT 241 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ GE ++ G+K++S ++ L EK VK + D + Sbjct: 242 GKIELVFEPEQFAGELAQFDII--ADGEVIVPMGRKISSRFVRQLIEKKVKKQTVPVDFV 299 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++A D+V+ ETGE+ + A + E+ L +++ L ++ + Y+ +TL Sbjct: 300 VGKFLATDLVDKETGELILAANSELTEELLTRFVELGVKEFQTLLINENGHGGYLADTLR 359 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D+ +A +IYR+MRPG+ T A+S+F LFFD +YDLS VGR+K N L + Sbjct: 360 LDETTTELEARAEIYRMMRPGEPPTKEAADSLFEGLFFDEARYDLSRVGRMKFNRSLGRE 419 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 + + KEDII ++K L+ +++G G+ DDID+LGNRR+RSVGEM +N +R+GL+R+E Sbjct: 420 ESEGSGILSKEDIIGVVKKLIAIKDGFGSTDDIDHLGNRRIRSVGEMAENAFRIGLVRLE 479 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R++KER++ + + + P+DLIN KPV +AV EFF SSQLSQ + N LS +TH RR+SA Sbjct: 480 RTVKERLAQAESEGLTPKDLINVKPVGAAVKEFFSSSQLSQFMDQNNPLSEVTHKRRISA 539 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGF+ETPYR Sbjct: 540 LGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLAVYARTNEYGFLETPYR 599 Query: 604 KVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 KV DGKVT+++ YLSA++E IAQAN+ LDE G+F + L+ R E L+P ++ + Sbjct: 600 KVIDGKVTDEIEYLSAIDESKYVIAQANAHLDEHGAFMDGLISTRFENEFTLMPSSRVQY 659 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SP+Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VVA S Sbjct: 660 MDVSPRQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERVVAMDS 719 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 G + A R G+++ VD+ RIV++ + ++ GVDIY L K+ RSNQNTC+NQ+PLV Sbjct: 720 GVLVKAARGGVIDSVDSSRIVVKVNDDEVQAGGLGVDIYNLTKYTRSNQNTCINQKPLVS 779 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 GD V R D++ADGPSTD+G+LALG+N+LVAFMPW+GYN+EDS+LISER+ ED FT+IH Sbjct: 780 PGDIVARGDVLADGPSTDMGELALGQNVLVAFMPWNGYNYEDSILISERVSQEDRFTTIH 839 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 IEE +ARDTKLGPEEI+ DIPNV E L +D GI+ VGAEV GDILVGK+TPKGE Sbjct: 840 IEELTCIARDTKLGPEEISSDIPNVKESALAKLDTTGIVYVGAEVKFGDILVGKVTPKGE 899 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 +PEEKLLRAIFGEKA DV+D+SLRVP+G+ GTVVDVR++ R GI+K+ER+ ++E+ + Sbjct: 900 RSQSPEEKLLRAIFGEKASDVKDSSLRVPTGMDGTVVDVRVYTRDGIEKDERAKAIEKME 959 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 I+ +A+D D+ I +I+ R +L GQ PK K + L+ E QW+ Sbjct: 960 IDSIAKDIKDQLRIFSADIHDRAARLLLGQAIKKAPK-RKSGDTVDQALLDETTPEQWFD 1018 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 F +QDE + ++++K E L+D ++ K K GDD+ PGVL++VKV++A+KR Sbjct: 1019 FRMQDEAINEKLDAMKQLLEDKHKELQDYYEEKKAKFSQGDDLAPGVLKMVKVYLAVKRR 1078 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 +Q GDKMAGRHGNKG+VS ++P EDMP+++DGTPVDIVLNPLGVPSRMN+GQ+ E HLGW Sbjct: 1079 LQPGDKMAGRHGNKGVVSLVVPVEDMPYMEDGTPVDIVLNPLGVPSRMNIGQVLELHLGW 1138 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS--HTEKISDYDDDSVLRVAEQWK 1201 A GLGK++ ++++ I LR +L+ V E + D+ ++ + Sbjct: 1139 AAAGLGKRLAQMMDEGAP---IKELRRYLDAVYNHNPACKKEDLDALSDEDFWQLCRNLR 1195 Query: 1202 SGVPVSTPVFDGADE-EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 G+P++TPVFDGA+E E + ML +A+L +GQ+ LYDG TGE FDR V+VGY+YMLKL+ Sbjct: 1196 QGIPMATPVFDGAEEVEDLQKMLELAELPATGQTHLYDGRTGERFDREVSVGYMYMLKLH 1255 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTG YSLVTQQPLGG++ GGQR GEMEVW +QAYGA+Y LQEMLT+KSD Sbjct: 1256 HLVDDKMHARSTGPYSLVTQQPLGGRAQFGGQRFGEMEVWALQAYGASYTLQEMLTVKSD 1315 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DV GRT++Y++IV GN E G PESFNVL KE++ALG+ I L Sbjct: 1316 DVDGRTKMYKNIVDGNLKIEPGLPESFNVLTKEIRALGIDIGLTQD 1361 >gi|121606528|ref|YP_983857.1| DNA-directed RNA polymerase subunit beta [Polaromonas naphthalenivorans CJ2] gi|158513872|sp|A1VTF8|RPOB_POLNA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|120595497|gb|ABM38936.1| DNA-directed RNA polymerase subunit beta [Polaromonas naphthalenivorans CJ2] Length = 1370 Score = 1618 bits (4191), Expect = 0.0, Method: Composition-based stats. Identities = 696/1375 (50%), Positives = 964/1375 (70%), Gaps = 16/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FG ++ +P L+++QK +Y FL + AP +R EGLQAAF++ Sbjct: 1 MAYSFTERKRIRKSFGNRESVLTVPYLLQMQKDAYIAFLQADRAPQKRMVEGLQAAFQNA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AKS 121 FPI + +G ++F+ Y P FDV +C R LT+A ++ ++LI++D + T +K Sbjct: 61 FPIVSHNGFVEMKFIEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKV 120 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 121 VKEVKEQEVYMGEVPLMTDKGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KDI++ R+DRRRK+PVT L A+G++ E IL+ F+ + Sbjct: 181 ARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNHESILANFFVFDNFRLM 240 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 A M G L D G+ V+ K++T + L++ G + + D Sbjct: 241 DSGAQMEFVAE-RMRGEVARFDLTD-KAGKVVVAKDKRITVRHTRELEQSGTTSISVPED 298 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G VA++I++ +TGEI +A D + E L+++ + I+++ +LY + ++ AYI T Sbjct: 299 FLIGRVVAKNIIDTDTGEIIAKANDELTELLLKKLRTAGIQNLQVLYTNELDQGAYISQT 358 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D+ D A + IYR+MRPG+ T +++F LF++ D YDLS VGR+K N R+ Sbjct: 359 LRADETADEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNARVG 418 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + EDI+A++KILVDLRNG G +DDID+LGNRRVR VGE+ +NQYR GL R Sbjct: 419 RDESTGPMVMTNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLAR 478 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+++KER+ + + +MP DLIN+KP+ +A+ EFF +SQLSQ + N L+ ITH RR+ Sbjct: 479 IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRV 538 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YGFIETP Sbjct: 539 SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETP 598 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V D KVT ++ YLSA+EE IAQAN++LD +G T +LV R GE ILV E++ Sbjct: 599 YRRVADSKVTMEIDYLSAIEEGKYVIAQANAALDNEGRLTGDLVSAREKGESILVSAERV 658 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D SP Q+VS+AASL+PFLE+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A Sbjct: 659 QYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVAAV 718 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A R G+V+ VDA RIV+R + + GVDIY L+K+QRSNQNT ++QRP+ Sbjct: 719 DSGTVVTATRGGVVDYVDATRIVVRVNDAEALAGEIGVDIYNLIKYQRSNQNTNIHQRPI 778 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK+GD++ + D++ADG STDLG++A+G+NML+ FMPW+GYNFEDS+LISER+V+ED +TS Sbjct: 779 VKMGDKLAKGDVVADGASTDLGEIAIGQNMLIGFMPWNGYNFEDSILISERVVAEDRYTS 838 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE VMARDTKLG EEITRDIPN+SE+ L +DE GII VGAEV PGD LVGK+TPK Sbjct: 839 IHIEELVVMARDTKLGSEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPK 898 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLRV G SGTV+DV++F R GI +++R+ + Sbjct: 899 GETTLTPEEKLLRAIFGEKASDVKDTSLRVSQGSSGTVIDVQVFTREGITRDKRAQQIID 958 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++++ D +D+ I++ + + R+ ++L G+ A GPK K T L +++ + W Sbjct: 959 DELKRYRLDLNDQLRIVEADAFDRIEKLLIGKIANGGPKKLAKGTKLDKAYLTDVEKYHW 1018 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + D++V +ES+K E ++ + F+ K +K+ GD++P GVL++VKV++A+K Sbjct: 1019 FDIRPADDEVASQLESIKNSMEQTRHSFDLSFEEKRKKLTQGDELPSGVLKMVKVYLAVK 1078 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDKMAGRHGNKG+VS+I+P EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HL Sbjct: 1079 RRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPCDIVLNPLGVPSRMNVGQVLEVHL 1138 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA GLG++I ++ +A ++ LR F++ + TE ++ D+ V+ +A+ Sbjct: 1139 GWAAKGLGQRIGDML---QAESKVAELRQFMDTLYNKSGRTEDLASLSDEQVVEMAQNLT 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADL----------DESGQSILYDGLTGEPFDRPVTV 1251 +GVP +TPVFDGA E I +ML++A Q+ LYDG TG+ F+R TV Sbjct: 1196 TGVPFATPVFDGASEADIMTMLQLAYPDAVAKAKGLTPTRTQAQLYDGRTGDAFERTTTV 1255 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAYVL Sbjct: 1256 GYMHFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVL 1315 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 QEMLT+KSDDVVGRT+VYESIV G G PESFNVLVKE+++LG+ ++LE S Sbjct: 1316 QEMLTVKSDDVVGRTKVYESIVKGEHAITAGMPESFNVLVKEIRSLGIDMELERS 1370 >gi|221135383|ref|ZP_03561686.1| DNA-directed RNA polymerase, beta subunit [Glaciecola sp. HTCC2999] Length = 1343 Score = 1618 bits (4191), Expect = 0.0, Method: Composition-based stats. Identities = 709/1367 (51%), Positives = 971/1367 (71%), Gaps = 26/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P++++IP L+ +Q S+ F+ +N + GL+AAF SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIDVN----GGNDAGLEAAFGSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++FD + G ++ Sbjct: 57 FPIKSYSGNSELQYVSYRLGEPMFDVRECQIRSVTYSAPLRVKLRLVLFDKEAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L AL +EEIL F+ K+ Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALEYSTEEILEMFFEKVKIRFEE 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + D + G ++D G ++E G+++++ +SL++ + L + + Sbjct: 235 EKTFMEIVP-DHLRGETAQFDILD-KEGNVLVEHGRRISARHTRSLEKAKITELEVPPEY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V+ +I++ TGE+ A D + +E++ + I LY++ +++ +YI +TL Sbjct: 293 IIGRVVSNNIIDENTGEVVANANDELTVDLVEKLKEAGINSFDTLYINEIDHGSYISDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR +AL++IYR+MRPG+ T AE++F+ LFF ++YDLSTVGR+K N RL Sbjct: 353 RVDSTNDRLEALVEIYRMMRPGEPPTKDAAETLFDNLFFSEERYDLSTVGRMKFNKRLGR 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + KEDI+A+++ L+ +R+GK +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 DEITGPGILSKEDIVAVMQQLITIRDGKDDVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVKERLSLGDLDNIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+SFAR N YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSSFARTNDYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT ++ +LSA+EE IAQAN +D +EL+ CR GE L+ + I Sbjct: 593 RRVVDGVVTEEIDFLSAIEEGQFAIAQANVEIDAAQQLVDELIPCRYRGETTLMQKSDIK 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+AAS+IPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTGME VA Sbjct: 653 YMDVSSQQIVSVAASIIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGMERTVAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+V+ VDA RIV++ E ++ +G+DIY L K+ RSNQNTC+NQ+P Sbjct: 713 SGVTVVAKRGGVVDYVDASRIVVKVNEAEMTAGEAGIDIYNLTKYTRSNQNTCINQKPTC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD + D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 NVGDPIVTGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAEEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLGPEEI+ DIPNV E L +DE G++ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCVARDTKLGPEEISADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V GTV+DV++F R G++K+ R+ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVRGTVIDVQVFTRDGVEKDARAKEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ + +D DE IL+ I++R +L S D +++ R W+ Sbjct: 953 QLREVKKDLSDELAILEDGIFARARNLLINNGV-------------SEDKLNDSARESWF 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 A++D+ + E + Q+ ++ + + + K +KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 DIAIKDDDAAADFEQIIEQHAEVRATFDKKLEVKRQKIIQGDDLQPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1060 HIQPGDKMAGRHGNKGVISTIQPVEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE--KISDYDDDSVLRVAEQW 1200 A GLG KI +I K +++ LRSFL +V G+ + I + D + R+AE Sbjct: 1120 MAAHGLGVKIDRMI---KEQEEVTKLRSFLNEVYNLGTSRQEVDIDSFTDHEIRRLAENL 1176 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVPV+TPVFDGA E I ML++AD+ ESGQ L+DG TG F+RPVTVGY+YMLKLN Sbjct: 1177 RKGVPVATPVFDGATEAEIKEMLKLADIPESGQITLFDGRTGRAFERPVTVGYMYMLKLN 1236 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE + Sbjct: 1297 DVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEENE 1343 >gi|330879362|gb|EGH13511.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. glycinea str. race 4] Length = 1308 Score = 1618 bits (4191), Expect = 0.0, Method: Composition-based stats. Identities = 704/1316 (53%), Positives = 963/1316 (73%), Gaps = 9/1316 (0%) Query: 52 NEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVF 111 + GL AAFKSVFPI ++SG A LE+V Y P FDV +C+ R +TYAVPL++ +RLI+F Sbjct: 1 DVGLHAAFKSVFPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIF 60 Query: 112 DVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGR 171 D + K+IKDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHD+G+ Sbjct: 61 DK--ESSNKAIKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGK 118 Query: 172 ASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILST 231 SGKLLY+ RIIP +G W+D EFD KD + VRIDRRRK+P + L ALG +E++L Sbjct: 119 THSSGKLLYSARIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDA 178 Query: 232 FYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEK 291 FY V+ RG+ L L G ++D D G+ ++E G+++T+ + L++ Sbjct: 179 FYTTNVFHVRGENLSLELVPQRL-RGEIAVLDILD-DKGKVIVEQGRRITARHINQLEKA 236 Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS 351 G+K L + D + G A+ IV+ TGEI E ++ + L +I +++ I LY + Sbjct: 237 GIKELEVPLDYVLGRTTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTND 296 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 ++ ++ +TL D ++ +AL++IYR+MRPG+ T AE++FN LFF ++YDLS V Sbjct: 297 IDCGPFVSDTLKIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAV 356 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GR+K N R+ + + KEDI+A++K LVD+RNGKG +DDID+LGNRRVR VGEM Sbjct: 357 GRMKFNRRIGRTEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMA 416 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQ+R+GL+R+ER++KER+S + + +MPQDLINAKPV +AV EFF SSQLSQ N Sbjct: 417 ENQFRVGLVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMGQNNP 476 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL ++AR Sbjct: 477 LSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYAR 536 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 N YGF+E+PYR V +G VT ++V+LSA+EE + IAQA++++++ +ELV R Sbjct: 537 TNQYGFLESPYRVVKEGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLN 596 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E + + +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P V Sbjct: 597 EFTVKAPADVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLV 656 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTGME VA+ SG +VA+R G+++ VDA RIV+R + +++ +GVDIY L K+ RSN Sbjct: 657 GTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSN 716 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNTC+NQRPLV GD V+R+DI+ADGPSTD+G+LALG+NM +AFM W+G+NFEDS+ +SE Sbjct: 717 QNTCINQRPLVSKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSE 776 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+V ED FT+IHI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV G Sbjct: 777 RVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAG 836 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G GTV+DV++F R G++ Sbjct: 837 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVE 896 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 ++ R++S+E+ Q++ + +D ++E I++ + RL L G+ A G G KK ++++ Sbjct: 897 RDARALSIEKSQLDEIRKDLNEEFRIVEGATFERLRSALLGRVAEGG-AGLKKGQEITNE 955 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 ++ QW++ + ++ + +E + + +L+D+F++K K+Q GDD+ PGVL Sbjct: 956 VLDGLEHGQWFKLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVL 1015 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A++R IQ GDKMAGRHGNKG+VS I+P EDMP +GTPVDIVLNPLGVPSRM Sbjct: 1016 KIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRM 1075 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDD 1190 NVGQI ETHLG A GLG+KI ++ + + ++ LR FL ++ G E + D D Sbjct: 1076 NVGQILETHLGLAAKGLGEKINRMLEEQR---KVAELRKFLNEIYNEIGGRQESLEDLTD 1132 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 + +L +A+ ++GVP++TPVFDGA E I +ML++AD+ ESGQ L+DG TG F+R VT Sbjct: 1133 NEILDLAKNLRNGVPMATPVFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERAVT 1192 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1193 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1252 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 LQEMLT+KSDDV GRT++Y++IV G+ E G PESFNVL+KE+++LG+ IDLE Sbjct: 1253 LQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1308 >gi|157377456|ref|YP_001476056.1| DNA-directed RNA polymerase, beta subunit [Shewanella sediminis HAW-EB3] gi|189043868|sp|A8G1F5|RPOB_SHESH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157319830|gb|ABV38928.1| DNA-directed RNA polymerase, beta subunit [Shewanella sediminis HAW-EB3] Length = 1343 Score = 1618 bits (4190), Expect = 0.0, Method: Composition-based stats. Identities = 695/1364 (50%), Positives = 958/1364 (70%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D G +AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKF----TDQDPTGERGFEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TY+ PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+P+MT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPMMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+ + L AL +++IL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLAASIILRALDYSTQDILDLFFDRVNFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L A L G S + D + G ++E G+++T+ ++ L++ L + D Sbjct: 235 DSLVMDLVAERL-RGETASYDIKDSE-GSILVEKGRRITARHIRQLEKTNTTELEVPVDY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +D ++ +TGE+ + A I + L ++ + I++I LY++ ++N AY+ +TL Sbjct: 293 ISGKISGQDYIDPDTGEVLVSANAEISLEDLAKLSLAGIKEISTLYINELDNGAYMSDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N RL++ Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 DDDEGTGILSKEDIVAVMKNIITIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+ V YLSA+EE IAQA LD DG +EL+ CR G+ + I Sbjct: 593 RKVIDGVVTDQVDYLSAIEEGRYVIAQAIVDLDADGRMMDELIACRHKGDSTFMGAGDIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E +A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERTLAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + AKR G V+ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVAAKRGGYVDYVDASRIVVKVNESELTPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +GD V R D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SMGDPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAMEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 + +D +E IL+ +Y R +L + D ++ PRSQ Sbjct: 953 HVGQAKKDLSEEFQILEEGVYGRARNLLLNAG-------------FTEDQLATIPRSQLL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 VQTIDDEAKQTELEQLAEQHDELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G P+DIVLNPLGVPSRMN+GQ+ E H+G Sbjct: 1060 TIQPGDKMAGRHGNKGVISKINPVEDMPYDENGNPIDIVLNPLGVPSRMNIGQVLEVHMG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G +I +++ + + ++ + ++ I + DD VLR+A+ K Sbjct: 1120 AAAKGIGDRITAMLEEQRELAELRGYIKEVYELGEEVQQRVDIDSFTDDEVLRLAKNLKG 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 GVP +TP FDGA E+ I ML +A L SGQ L+DG TG+ F+R VTVGY+YMLKLNH+ Sbjct: 1180 GVPTATPAFDGAKEKEIKEMLALAGLPTSGQRRLFDGRTGDEFERQVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT +Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1300 NGRTHMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQD 1343 >gi|329118714|ref|ZP_08247414.1| DNA-directed RNA polymerase subunit beta [Neisseria bacilliformis ATCC BAA-1200] gi|327465149|gb|EGF11434.1| DNA-directed RNA polymerase subunit beta [Neisseria bacilliformis ATCC BAA-1200] Length = 1398 Score = 1618 bits (4189), Expect = 0.0, Method: Composition-based stats. Identities = 695/1400 (49%), Positives = 959/1400 (68%), Gaps = 40/1400 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL A D+R +EGLQAAF S+ Sbjct: 1 MTYSFTEKKRIRKSFAKRENVLEVPFLLATQLDSYAKFLQQEKAYDKREDEGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D + + Sbjct: 61 FPIVSHNGYARLEFVHYVLGEPLFDIPECQLRGITYAAPLRARIRLVILDKESSKQD-VV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 120 KEVRENEVYMGEIPLMTPSGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG +E+IL TFY K + Sbjct: 180 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYTNEQILDTFYDKETFYLLK 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L A L G +VD G ++ +GK++ + ++ +++ G+K L + +D Sbjct: 240 DGVRTDLVAGRL-KGETAKLDIVD-KNGNVLVAAGKRINAKHIRDIEKAGLKHLPVEADA 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+V +TGE+ A D I E+ L + + +++I LY++ ++ YI TL Sbjct: 298 LVGKVLARDVVAEDTGEVLALANDEITEELLAQFDINGVKEIHTLYINDLDQGGYISATL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ + A + IYR+MRPG+ T E +FN LFF+ D YDLS VGR+K N R Sbjct: 358 RTDETNGQHAARIAIYRMMRPGEPPTDEAVELLFNRLFFNEDSYDLSRVGRMKFNTRTYE 417 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 418 QKLSEEQKNSWYGRLLNETFAGAAEKGGFVLNVEDIVASIATLVELRNGHGEVDDIDHLG 477 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 478 NRRVRSVGELAENQFRSGLSRVERAVKERLNQAESENLMPTDLINAKPVSAAIKEFFGSS 537 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 538 QLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 597 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V +GKVT+++ YLSA+EE IAQAN++LD G Sbjct: 598 GLINSLSVYARTNEYGFLETPYRRVVNGKVTDEIEYLSAIEEGRFVIAQANAALDSKGRL 657 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 T++LV CR GE I+ +++ ++D + Q VS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 658 TDDLVTCREKGETIMATVDRVQYMDVATGQAVSVAASLIPFLEHDDANRALMGANMQRQA 717 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+AE P VGTG+E VA S AIVA+R G+VE VDA R+V+R + + GVD Sbjct: 718 VPCLRAEKPMVGTGIERDVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEAVAGEVGVD 777 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 778 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 837 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 838 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQSRLDESG 897 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 898 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 957 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 958 DVQVFTREGIQRDKRAQSIIDAELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1017 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P + W+ V DE + + +E +K + + E F+ K +K Sbjct: 1018 KLAKGSEITAEYLASLPSKHDWFDVRVADENIAKQMELIKSSLQDKREEAESLFEIKKKK 1077 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1078 MTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1137 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL--EKVIG 1177 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++++ + +I + + G Sbjct: 1138 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIGRMLDEKRKVREIRKFLDTMYNGNLGG 1197 Query: 1178 TGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------ 1231 H E +S D +L +A+ ++G ++PVFDGA E I + L +A + Sbjct: 1198 PDRHKEDLSQLSDAEILTLAQNLRNGATFASPVFDGAHESEIKAFLELAYPSDDPEVQKL 1257 Query: 1232 G------QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 G Q LYDG +GEPFDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGG Sbjct: 1258 GFNDTKTQITLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGG 1317 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV GRT++YE+IV G + G PE Sbjct: 1318 KAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPE 1377 Query: 1346 SFNVLVKEMQALGLSIDLEN 1365 SFNVLVKE+++LGL IDLE Sbjct: 1378 SFNVLVKEIRSLGLDIDLER 1397 >gi|171462871|ref|YP_001796984.1| DNA-directed RNA polymerase, beta subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226699428|sp|B1XSP3|RPOB_POLNS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|171192409|gb|ACB43370.1| DNA-directed RNA polymerase, beta subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 1366 Score = 1617 bits (4188), Expect = 0.0, Method: Composition-based stats. Identities = 703/1374 (51%), Positives = 957/1374 (69%), Gaps = 18/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F RVRK F K +P LI Q SY FL + R EGLQAAF S Sbjct: 1 MNYSFTERKRVRKSFAKRVNNHQVPYLIATQLESYAKFLQADKPAMSRLTEGLQAAFTSA 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A +E+VSY+ P FDV +C R TY L+ +RLI++D + T + Sbjct: 61 FPIVSNNGYARMEYVSYQLSQPPFDVKECQQRGYTYHSALRAKVRLIIYDREAPT---KV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KE +YMG++PLMT++G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 118 KEVKESEVYMGEIPLMTENGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI++ RIDRRRK+PVT L A+G+++E+IL+ F+ +S Sbjct: 178 RIIPYRGSWLDFEFDPKDILYFRIDRRRKMPVTILLKAIGLNNEQILANFFNFDHFSLTA 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G S ++D + G VI+ K++ + ++ L+ K + + D Sbjct: 238 NGGSMEFVPERL-RGQLASFDVLD-ENGVVVIQKDKRINTKHIRELEAAKTKTIAVPDDY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G VA +IV+ ++GEI A D I E+ L + + I+ + +Y + +++ AYI TL Sbjct: 296 LIGRVVARNIVDPDSGEILAYANDEITEELLATLRDAGIKQLETIYTNDLDSGAYISQTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ D+ A + IYR++RPG+ E +F LF+ D YDLS VGR+K+N RLN Sbjct: 356 RTDETADQMAARIAIYRMLRPGEPPIEDAVEVLFQRLFYSEDTYDLSRVGRMKVNSRLNR 415 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDI+ IK LVDLRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL R+ Sbjct: 416 PEMEGPMVLSSEDILDTIKSLVDLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRV 475 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+ + +++MP DL N+KP+ SA+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 476 ERAVKERLGQAETENLMPHDLTNSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRIS 535 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL FAR+N +GF+ETPY Sbjct: 536 ALGPGGLMRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEHGFLETPY 595 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV + KV+++VVYLSA+EE IAQAN+++D+ G +ELV R AGE ++V E+ID Sbjct: 596 RKVSNSKVSDEVVYLSAIEEAKYVIAQANATIDKSGKLADELVSARQAGETMMVSPERID 655 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 FID +P Q+VS AASL+PFLE+DD+NR LMG NMQRQAVP L+ + P VGTG+E +VA Sbjct: 656 FIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGLERIVAVD 715 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG ++A R GIV+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+V Sbjct: 716 SGTVVLAARGGIVDYVDANRVVIRVNDDETTAGEVGVDIYNLIKYTRSNQNTNINQRPIV 775 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD V R D++ADG STDLG+LALG+NM VAFMPW+GYNFEDS+LISE++V++D +TSI Sbjct: 776 KVGDRVARGDVVADGASTDLGELALGQNMTVAFMPWNGYNFEDSILISEKVVADDRYTSI 835 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+ARDTKLG EEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 836 HIEELSVVARDTKLGSEEITRDISNLAESQLSRLDESGIVYIGAEVEAGDVLVGKVTPKG 895 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GT++DV++F R GI+++ R+ S+ +E Sbjct: 896 ETTLTPEEKLLRAIFGEKASDVKDTSLRVPSGMIGTIIDVQVFTREGIERDARAQSIIQE 955 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ +D+ I++ + + RL ++L G+ A GPK K T + + +++ + + Sbjct: 956 ELQRYRLGLNDQLRIVEGDAFMRLEKLLIGKVANGGPKKLAKGTKIDKEYLADLDKYHRF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 D++V VE++K E + ++ F+ K K+ GDD+ PGV ++VKV++A+KR Sbjct: 1016 DVRPADDEVASQVEAIKSSIEAKRKQFDEAFEEKRTKLTQGDDLQPGVTKMVKVYLAVKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS+I P EDMPF+ DG PVDIVLNPLGVPSRMNVGQI ETHLG Sbjct: 1076 RLQPGDKMAGRHGNKGVVSKIAPAEDMPFMADGRPVDIVLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA G+GK++ ++ + + LR FL+++ E I ++ D+ + +AE + Sbjct: 1136 WAAQGIGKRVDEMV---RQQAKQAELREFLKQLYNETGRIEDIDNFTDEQITVLAENLRQ 1192 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADL----------DESGQSILYDGLTGEPFDRPVTVG 1252 G+P +TPVFDGA E I ML +A Q IL DG TG+ F+RP TVG Sbjct: 1193 GLPFATPVFDGATEAEIGRMLELAYPEEVATSLKMTPSRQQMILCDGRTGDQFERPATVG 1252 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 +++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQ Sbjct: 1253 VMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1312 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 EMLT+KSDDV GRT+VYE+IV G T + G PESFNVLVKE+++LG+ ID+E + Sbjct: 1313 EMLTVKSDDVAGRTKVYENIVKGEHTIDAGMPESFNVLVKEIRSLGIEIDMERN 1366 >gi|78099424|gb|ABB20848.1| RNA polymerase subunit B [Acinetobacter baylyi] gi|78099432|gb|ABB20852.1| RNA polymerase subunit B [Acinetobacter guillouiae] Length = 1362 Score = 1617 bits (4186), Expect = 0.0, Method: Composition-based stats. Identities = 712/1374 (51%), Positives = 965/1374 (70%), Gaps = 21/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++ P L+ +Q SY FL P R + GLQAAF+SV Sbjct: 1 MAYSYTEKKRIRKNFGKLPQVMHAPYLLSIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A LEFV Y P+FDV +C+ R T+A P+++ +RLI+ D + KSI Sbjct: 61 FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTFAAPMRVKIRLIIKDRE----TKSI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 117 KDVREQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD++ VRIDRRRK+ T L AL +E+IL+ FY K+ Sbjct: 177 RIIPYRGSWLDFEFDAKDLVFVRIDRRRKLLATVVLRALSYSNEQILNMFYEKVPVYLDM 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G +VD D G+ ++E GK++ + ++ ++ G+ L + + Sbjct: 237 GSYQIDLVPERL-RGEMAQFDIVDND-GKAIVEQGKRINARHVRQMEAAGLTKLPVPDEY 294 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L AEDIV + GE+ A V+ + L I I+ IL+ + ++ +++ +TL Sbjct: 295 LYERITAEDIVLKD-GEVI-TANTVLSHEILVRIAEGGIKQFNILFTNDIDRGSFVADTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE++FN LFF +++YDLS VGR+K N RL Sbjct: 353 RADTTSGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSTERYDLSPVGRMKFNRRLGR 412 Query: 423 DTP--------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DII ++K LV++RNGKG +DDID+LGNRRVRSVGEM +NQ Sbjct: 413 PYEVGTDQKSREVEGILSNDDIIDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQ 472 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER++ + D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS Sbjct: 473 FRVGLVRVERAVKERLNQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSE 532 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N Sbjct: 533 ITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANN 592 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYR+V DG+VT+DV YLSA+EE IAQA+S+LD+DG TE+ V R G+ + Sbjct: 593 FGFLETPYRRVVDGRVTDDVEYLSAIEEVGTVIAQADSALDKDGHLTEDFVSVRHQGDFV 652 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG Sbjct: 653 RMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTG 712 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME+ VA SG ++AKR G +E VDA R+VIR E ++ +GVDIY L+K+ RSNQNT Sbjct: 713 MEANVAHDSGVCVIAKRGGRIEFVDASRVVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNT 772 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+ LV +GD+V R D++ADGPSTD G+LALG+NM VAFM W+GYN+EDS+L+SER++ Sbjct: 773 CINQKVLVSMGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVL 832 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 833 QEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVAAGDIL 892 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRV S V GTV+DV++F R GI+K+E Sbjct: 893 VGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVSSSVKGTVIDVQVFTRDGIEKDE 952 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ ++E+ Q++ +D +E I + R++ +L GQ + G K+ LS D++S Sbjct: 953 RAQAIEKAQLDAYRKDLKEEFKIFEEAARERIIRLLKGQESNGGGTT-KRGDKLSEDVLS 1011 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + DE + + ++V + ++++F K K+ GD++ GVL+VV Sbjct: 1012 GLELVDLLEVQPTDEGIAERLTQIQVFLKEKSYEIDEKFAEKKRKLSTGDELTTGVLKVV 1071 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP G PVD+VLNPLGVPSRMNVG Sbjct: 1072 KVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDIHGVPVDVVLNPLGVPSRMNVG 1131 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 QI ETHLG A GLG KI ++ + + + LR FL+K+ G E + D+ + Sbjct: 1132 QILETHLGMAAKGLGDKIDKMMKEQRT---VLELRDFLDKIYNKVGGEQEDLDSLTDEEI 1188 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L ++ + GVP++TPVFDGA+E I +L + + +GQ++LYDG TGE FDRPVTVGY Sbjct: 1189 LVLSGNLRKGVPLATPVFDGAEESQIKELLELGGISRTGQTVLYDGRTGERFDRPVTVGY 1248 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE Sbjct: 1249 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1308 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 MLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1362 >gi|238897913|ref|YP_002923592.1| RNA polymerase, beta subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259494185|sp|C4K4F1|RPOB_HAMD5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|229465670|gb|ACQ67444.1| RNA polymerase, beta subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 1341 Score = 1616 bits (4185), Expect = 0.0, Method: Composition-based stats. Identities = 693/1363 (50%), Positives = 964/1363 (70%), Gaps = 22/1363 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + + +GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKNFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PKGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++S + L++V+Y P FDV +C R TY+ PL++ LRL+V++ + G ++ Sbjct: 57 FPIQSYSAHSELQYVNYRLGEPVFDVKECQIRGATYSAPLRVKLRLVVYEKEAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFV+ G +R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVVNGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D+EFD KD + VRIDRRRK+P T L AL + +IL+ F+ K+ + Sbjct: 175 RVIPYRGSWLDLEFDPKDNLFVRIDRRRKLPATIILRALDYSTTDILNLFFEKVRFEICN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + G+ +E G+++T+ ++ L + ++ + + + Sbjct: 235 DKLEMNLVPERL-RGETASFDIQI--NGKIYVEKGRRVTARHIRQLDKDQIQRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA+D ++ TGE+ A + L ++ + + I ++ + +++ YI TL Sbjct: 292 IIGKVVAQDYIDENTGELICSANTELSFDLLAKLSQAGHQQIETIFTNDLDHGDYISQTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+K N L Sbjct: 352 KVDPTTDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEERYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + KEDII ++K L+ +RNGKG IDDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKEDIIEVMKKLIGIRNGKGEIDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYG++CP ET EG NIGL++SL+ +A N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGKVCPIETPEGPNIGLINSLSVYACTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VTN++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L +E++D Sbjct: 592 RSVHEGAVTNEIHYLSAIEEGNFVIAQANSNLDDNGYFIEDLVTCRNKGESSLFRKEQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P + Sbjct: 712 SGVTCVAKRGGSVQYVDASRIVIKVNENEMHPGEAGIDIYNLNKYTRSNQNTCINQIPCI 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R +++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER++ ED FT+I Sbjct: 772 NLGELVERGNVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVMQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 I+E ++RDTKLG EE+T DIPNV E L +DE GI+ +GAEVN GDILVGK+TPKG Sbjct: 832 QIQELACISRDTKLGSEEVTADIPNVGEAALSKLDESGIVYIGAEVNGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ ++PEEKLLRAIFGEKA DV+D+SLRVP+GVS TV+DV+IF R G++K++R++ +E Sbjct: 892 ETQLSPEEKLLRAIFGEKASDVKDSSLRVPNGVSATVIDVQIFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ + +D +E IL+ ++ R+ +L ++S+ +S P +W Sbjct: 952 ELKQVKKDLSEELKILEAALFGRIKAVLISGG-------------ITSEKLSRLPCERWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + +E+ Q +E L QY+ K+ + + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 ELPLSEEQKQEQLEQLAEQYDEMKAEFDKKMEVKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVL+PLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPVEDMPYDEEGNPVDIVLSPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI ++ + + + T +S + D +L +AE K Sbjct: 1119 MAAKGIGNKINEMLKKNERVSKLRKFIQKAYDLGDGVCQTVDLSTFSDKEILSLAENLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+ ++TPVFDGA E+ I +L++ADL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMTIATPVFDGAKEKEIKQLLKLADLPTSGQINLFDGRTGEQFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK+++RSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1239 VDDKMHSRSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1299 NGRTKMYKNIVDGDHRMEAGIPESFNVLLKEIRSLGINIELEE 1341 >gi|95930693|ref|ZP_01313426.1| DNA-directed RNA polymerase, beta subunit [Desulfuromonas acetoxidans DSM 684] gi|95133173|gb|EAT14839.1| DNA-directed RNA polymerase, beta subunit [Desulfuromonas acetoxidans DSM 684] Length = 1369 Score = 1615 bits (4181), Expect = 0.0, Method: Composition-based stats. Identities = 720/1364 (52%), Positives = 992/1364 (72%), Gaps = 12/1364 (0%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK F + II+IP+LI++QK SY FL ++ R N GL+A F+SVFPI FS Sbjct: 11 LRKHFSEIQRIIEIPNLIDIQKNSYKRFLQADLPASARQNIGLEAVFRSVFPIRDFSETC 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE+VSY + PK+DV++C R +T+A P+K+ +RL+ +DVD+ TG +SI+DIKEQ +Y Sbjct: 71 SLEYVSYVLEVPKYDVEECHQRGMTFAAPVKVRVRLVSWDVDKDTGVQSIRDIKEQEVYF 130 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++PLMT++GTF+I G +R++VSQLHRSPG+ +DHDKG+ SGKLLY R+IP +G W+ Sbjct: 131 GEIPLMTENGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKLLYNARVIPYRGSWL 190 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D +FD KDI++VRIDRRRK+P T L ALG +EE+L +Y + + ++ Sbjct: 191 DFDFDHKDILYVRIDRRRKLPATVLLQALGYSAEELLKYYYDTETLQINAEGYTKTVN-L 249 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 DL+ G + +V G+ ++++ +K T ++ + E G++ + I + G VA D+ Sbjct: 250 DLLAGQRTVLDVV-APNGDVLVKANRKFTKAAIRKISESGLETIAIDESEVLGKVVATDV 308 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 V+ ETGE+ IE + E ++ + I + +L++D++ Y+R+TL+ D + +D Sbjct: 309 VDTETGEVLIECNQELTETGIQLLREKGITSVDVLFIDNLYVGPYLRDTLLQDTVNNPED 368 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 A+++IYR +RPGD T A ++F LFF+S++YDLS VGR+K+N +L ++TP + R + Sbjct: 369 AMIEIYRRLRPGDPPTVRSATALFEGLFFNSERYDLSVVGRLKLNYKLGVETPLEHRTLT 428 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 KEDI+ +++ L+DLRNGKG +DDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER+S Sbjct: 429 KEDILEVVRYLIDLRNGKGHVDDIDHLGNRRVRAVGELLENQYRVGLVRMERAIKERMSL 488 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 ++DS+MP DLIN+KPV + V EFF SSQLSQ + N LS ITH RRLSALG GG+ R Sbjct: 489 QEVDSLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRE 548 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+++AR+N +GF+ETPYR V DG+VT+ Sbjct: 549 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRLVQDGRVTS 608 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 ++ Y SA+EEE IAQAN+ LD+DG F E++ R +GE +++ RE I +D SPKQ+V Sbjct: 609 EIKYFSALEEEGHAIAQANAELDDDGCFVNEVINARQSGEFMMLRREDIQLMDVSPKQLV 668 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S+AA+LIPFLENDD+NR LMG NMQRQAVPLL+A+AP VGTGME +VA SGAA+VA+ Sbjct: 669 SVAAALIPFLENDDANRALMGSNMQRQAVPLLRADAPLVGTGMERIVAHDSGAAVVARHD 728 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G+VE VDA RIV+R EG D + +GVDIY L+KF RSNQNTC+NQ+P+V+VGD V R Sbjct: 729 GVVESVDASRIVVRIDEGQDDETGTGVDIYNLIKFIRSNQNTCLNQKPIVEVGDHVERGA 788 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 IIADGPST G+L LG+N+LVAFMPW GYNFEDS+LISE++V ED +TSIHIEEFE +AR Sbjct: 789 IIADGPSTQWGELGLGQNVLVAFMPWEGYNFEDSILISEKLVKEDRYTSIHIEEFECVAR 848 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLG EEIT DIPN+ ++ LK++DE GII +GAEV PGDILVGKITPKGE+ ++PEEKL Sbjct: 849 DTKLGKEEITDDIPNLGDDALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKL 908 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFGEKA DVRDTSLRVP GV G V+ R+F+R G DK+ R+ +E+ +I+ L +D++ Sbjct: 909 LRAIFGEKAGDVRDTSLRVPPGVEGVVIGARVFSRKGSDKDSRTEKIEQHEIDKLLKDQN 968 Query: 973 DEQVILDRNIYSRLMEILCGQNAVS------GPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 DE I+ + +L ++LCG + G KK++VL +D + +++ + ++ Sbjct: 969 DEIRIIRESARHKLTDLLCGNKLAASVTDDDGKVLLKKNSVLEADQLEALSVARFQEISL 1028 Query: 1027 QD-EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 D E ++ V L + +++ F +KI+KI+ GDD+PPGV+++VK+++A+KR + Sbjct: 1029 VDGEAIEDRVAELMRGLADREELIKRVFSDKIDKIKRGDDLPPGVIKMVKIYIAIKRKLS 1088 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG++SRILP EDMP+ +DGTPV+IVLNPLGVPSRMNVGQI E HLG A Sbjct: 1089 VGDKMAGRHGNKGVLSRILPVEDMPYSEDGTPVEIVLNPLGVPSRMNVGQILEIHLGLAA 1148 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 GLG +I+ +++ + + LR ++ V + D + V ++A++ G+P Sbjct: 1149 RGLGNQIQEVLDRQHTHNE---LREKIKDVYDDQELNPFLDDLSEMDVNKLAKRLAPGIP 1205 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 ++TPVF+G E I + + SGQ LY+G TGE F VTVG +YMLKL+H+V D Sbjct: 1206 MATPVFEGVSESMIKEQITRSGFSPSGQMTLYNGKTGEAFKEKVTVGIMYMLKLHHLVDD 1265 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA++ LQE LT+KSDDV GR Sbjct: 1266 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGASHALQEFLTVKSDDVAGR 1325 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 TR+YE+IV G T E G PESFNVL+KE+Q+L L ++L K Sbjct: 1326 TRMYEAIVKGRHTLEAGLPESFNVLIKELQSLCLDVELLEDEEK 1369 >gi|90407965|ref|ZP_01216138.1| DNA-directed RNA polymerase, beta subunit [Psychromonas sp. CNPT3] gi|90310903|gb|EAS39015.1| DNA-directed RNA polymerase, beta subunit [Psychromonas sp. CNPT3] Length = 1344 Score = 1613 bits (4177), Expect = 0.0, Method: Composition-based stats. Identities = 699/1367 (51%), Positives = 985/1367 (72%), Gaps = 25/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G + +RK FGK P++++ P L+ +Q S+ F+ +++ GL+AAF+S+ Sbjct: 1 MGYSYTEKKLIRKDFGKRPQVMEKPYLLSIQLDSFKRFIEVDLT----GEVGLEAAFRSI 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ +++ LRL+++D D G +I Sbjct: 57 FPIASYSGTSELQYVSYRLGEPVFDVKECQIRGVTYSASVRVKLRLVIYDRDAPAG--TI 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 115 KDIREQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L AL +++IL F+ + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIMLRALEYSTQDILDMFFDTTKFEI-K 233 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D AD + G ++S +V G+ +E+GK++T+ ++ L++ +K L + ++ Sbjct: 234 DGAISMALIADRLRGEQLSFDIVSA--GKVYVEAGKRVTARHIRQLQKDKIKHLEVPAEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G A+D ++ ETGEI I A D++ +SL E+ S I+ ++Y + ++ +++ +TL Sbjct: 292 LEGKVSAKDYISSETGEIIINANDILTLESLAELAQSGIKAFEVIYTNELDCGSFMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +R +AL++IYR+MRPG+ T AE +F LFF ++YDLS VGR+K N R+ Sbjct: 352 RVDSSTNRLEALVEIYRMMRPGEPPTKDAAEGLFQNLFFAEERYDLSKVGRMKFNRRVGN 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + KEDI++++K L+D+RNG G +DDID+LGNRR+R VGEM +NQ+R+GL+R+ Sbjct: 412 EGDEGKGILSKEDILSVMKTLIDIRNGNGVVDDIDHLGNRRIRCVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+ MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLDATMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR N+YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLATFARTNSYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DGK ++ V YLSA+EE + IAQA++ +DE+G EE + CR GE + ++ID Sbjct: 592 RKVVDGKPSDKVEYLSAIEEGSFVIAQASARIDENGFLNEESIPCRHEGETTFMAPDQID 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++SIAASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E +A Sbjct: 652 YMDVSPQQIISIAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERRIAID 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG ++AKR+G+V+ VDA RIVI+ + +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 712 SGVTVIAKRSGLVDYVDASRIVIKVDDSELLPGEAGIDIYNLTKYTRSNQNTCINQRPTC 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K G+ + + D++ADGPSTD+G+LALG+NM +AFMPW+G+NFEDS+LISER+ ED FT+I Sbjct: 772 KPGEPIVKGDVLADGPSTDMGELALGQNMKIAFMPWNGFNFEDSILISERVAQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+EF +AR+TKLG EEI+ DIPNV E L +DE GI+ VGAEV PGDILVGK+TPKG Sbjct: 832 HIQEFSCVARETKLGCEEISADIPNVGEAALSKLDESGIVYVGAEVKPGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRV + TV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVANSTYATVIDVQVFTRDGVEKDKRALEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +++ IL+ I+ + ++IL + + PR+QW Sbjct: 952 QLKSAKKDLNEKFKILENAIFEKALKILVSAGQ-------------DEQRLKQMPRAQWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + V D+ Q ++ + QY+ K+ E F K KI GDD+ PGV ++VKV++A++R Sbjct: 999 EIIVDDQTQQSYLDQIIAQYDDIKADYEKEFDIKRRKITQGDDLAPGVQKIVKVYLAVRR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VS I+P EDMP + G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 RLQPGDKMAGRHGNKGVVSNIVPVEDMPHDEFGVPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT--EKISDYDDDSVLRVAEQW 1200 AC G+G+K++ +I + + +++ +R F++K+ G IS++DD++V+R+A+ Sbjct: 1119 LACKGVGEKLERMIKNQR-EVEMAKVREFIQKLYSFGEAPCHVDISEFDDEAVMRLAKNL 1177 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 G+PV+TP FDGA E I +L++ADL ESGQ IL DG TG PF+RPVTVGY+YMLKLN Sbjct: 1178 YRGLPVATPAFDGAYESEIRELLKLADLPESGQLILTDGRTGIPFERPVTVGYMYMLKLN 1237 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QA+GAAY LQEMLT+KSD Sbjct: 1238 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAFGAAYTLQEMLTVKSD 1297 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV G+ E G PESFNVL+KE+++L ++I+L+ Sbjct: 1298 DVNGRTKMYKNIVDGDHRMEPGIPESFNVLLKEIRSLSINIELDEEN 1344 >gi|171060537|ref|YP_001792886.1| DNA-directed RNA polymerase subunit beta [Leptothrix cholodnii SP-6] gi|170777982|gb|ACB36121.1| DNA-directed RNA polymerase, beta subunit [Leptothrix cholodnii SP-6] Length = 1375 Score = 1612 bits (4173), Expect = 0.0, Method: Composition-based stats. Identities = 698/1377 (50%), Positives = 969/1377 (70%), Gaps = 17/1377 (1%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 A + R+RK FGK ++++P L+ +QK SY FL ++ P +R EGLQAAF S Sbjct: 4 ASPYSYTERKRIRKSFGKRASVLNVPYLLTMQKDSYVAFLQKDVPPKQRKPEGLQAAFIS 63 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AK 120 FPI + +G ++F+ + P FDV +C R LT+A ++ L++IV+D + T +K Sbjct: 64 AFPIVSHNGFVEMKFIEFNIAKPPFDVRECQQRGLTFAAAVRAKLQMIVYDREASTSQSK 123 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +K+IKEQ +YMG++PLMT G+F++ G +R++VSQLHRSPG+ F+HDKG+ SGKLL+ Sbjct: 124 VVKEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLF 183 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KDI+ R+DRRRK+PVT L A+G++ E+IL+ F+ + Sbjct: 184 SARIIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGLNPEQILAHFFKFDNFRL 243 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 A + G + D G V+E K++T+ ++SL G +++ + Sbjct: 244 MDTGAQMEFVAE-RIKGEVARFDITD-KNGNVVVEKDKRITAKHIRSLDASGTQYISVPE 301 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 D L G VA ++V+ +TGEI +A D + E L+++ + I+D+ LY + +N A+I Sbjct: 302 DFLVGRVVARNMVDADTGEIVAKANDELTELLLKKLRSAGIKDLQCLYTNELNQGAFISQ 361 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL +D+ D+ A + IYR+MRPG+ T E++F+ LF+++D YDLS VGR+K N R+ Sbjct: 362 TLASDETADQLAARVAIYRMMRPGEPPTEDAVEALFHRLFYNADTYDLSRVGRMKFNARV 421 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 + + + +DI+ ++KILVDLRNG G +DDID+LGNRRVR VGE+ +NQYR GL Sbjct: 422 GREASEGAMTLANDDILDVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRSGLA 481 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+E+++KER+ + +S+MP DLIN+KP+ +A+ EFF +SQLSQ + N LS ITH RR Sbjct: 482 RIEKAVKERLGQAETESLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRR 541 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL FAR+N YGF+ET Sbjct: 542 VSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNDYGFLET 601 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR+V DG T + YLSA+EE IAQAN+SLD D T+ELV R G+ +L E+ Sbjct: 602 PYRRVKDGIATTQIDYLSAIEEGKYVIAQANASLDADSRLTDELVSAREKGDSVLTQPER 661 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 I ++D +P Q+VS+AASL+PFLE+DD+NR LMG NMQRQAVP+L+ E VGTG+E V A Sbjct: 662 IQYMDVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKALVGTGVERVAA 721 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG + A+R GIV+ +D RIVIR + + GVDIY L+K+ RSNQNT ++QRP Sbjct: 722 VDSGTVVTARRGGIVDYIDTNRIVIRVNDAETVAGEVGVDIYNLIKYHRSNQNTNIHQRP 781 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V G V D+IADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISER+V+ED +T Sbjct: 782 IVSRGHLVGAGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYT 841 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE VMARDTKLGPE+ITRDIPN+SE L +DE GI+ VGAEVNPGD+LVGK+TP Sbjct: 842 SIHIEELVVMARDTKLGPEDITRDIPNLSEAQLSRLDESGIVYVGAEVNPGDVLVGKVTP 901 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+DTSLRV G SGTV+DV++F R GI +++R+ + Sbjct: 902 KGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGTSGTVIDVQVFTREGITRDKRAQQII 961 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 ++++ D +D+ I++ + + R+ ++L G+ A GP+ K TV+ +++ + Sbjct: 962 DDELKRFRLDLNDQLRIVEADAFDRIEKLLTGKIANGGPRKIAKGTVIDKAYLTDVEKYH 1021 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ +++ +ES+K E ++ + F+ K +K+ GD++P GVL++VKV++A+ Sbjct: 1022 WFDIRPAEDEAANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAV 1081 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG+VS+I P EDMP++ DGTP DIVLNPLGVPSRMNVGQ+ E H Sbjct: 1082 KRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQVLEVH 1141 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQ 1199 LGWA G+G++I ++ + ++ LR F +++ +G +E + D D+ V+ +A Sbjct: 1142 LGWAGKGIGQRIGDML---QGEARVAELRKFFDELYNQSGGKSESLDDLSDEDVIEMAGN 1198 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADL----------DESGQSILYDGLTGEPFDRPV 1249 +GVP +TPVFDGA EE I ML++A Q+ L DG TGE F+RPV Sbjct: 1199 LSNGVPFATPVFDGAKEEEIRGMLKLAYPDDIAARKGLTPTRTQAWLCDGRTGEQFERPV 1258 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TVGY+++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1259 TVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1318 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 VLQEMLT+KSDDV GRT+VYESIV G + + G PESFNVLVKE+++LG+ I+LE + Sbjct: 1319 VLQEMLTVKSDDVNGRTKVYESIVKGEHSIDAGMPESFNVLVKEIRSLGIDIELERN 1375 >gi|225024705|ref|ZP_03713897.1| hypothetical protein EIKCOROL_01591 [Eikenella corrodens ATCC 23834] gi|224942531|gb|EEG23740.1| hypothetical protein EIKCOROL_01591 [Eikenella corrodens ATCC 23834] Length = 1393 Score = 1612 bits (4173), Expect = 0.0, Method: Composition-based stats. Identities = 695/1398 (49%), Positives = 962/1398 (68%), Gaps = 41/1398 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 R+RK F K ++++P L+ Q SY FL A D+R +EGLQAAF S+ Sbjct: 1 MSYSVTEKKRIRKSFAKRDSVLEVPYLLATQLESYRKFLQQETAFDKRLDEGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEF Y P FD+ +C R +TYA PL+ +RL++ D + + Sbjct: 61 FPIVSHNGYARLEFTHYILGEPLFDIAECQLRGITYAAPLRARIRLVILDKESSKPN-VV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+F+I G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 120 KEVRENEVYMGEIPLMTPYGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D+EFD KD+++ RIDRRRK+PVT L ALG +E+IL TFY K + Sbjct: 180 RIIPYRGSWLDLEFDPKDLLYFRIDRRRKMPVTILLKALGYSAEQILDTFYDKETFYLSK 239 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L + L G V + + D D G+ ++ +GK++T+ L+ +++ G+K L + ++ Sbjct: 240 DGVETELVLSRL-KGETVKTDICDAD-GKVLVAAGKRVTAKGLRDIEKAGLKRLRVDAEA 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+D++ +TGEI A I E+ L ++ + +I LY++ + YI +TL Sbjct: 298 LIGKMLAKDVIVPDTGEILASANSEITEELLAQLEIHGVNEIQTLYINELGYGGYISSTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A + IYR+MRPG+ T E +F+ LFF+ YDLS VGR+K N R Sbjct: 358 QVDETADQMAARIAIYRMMRPGEPPTEEAVEMLFDRLFFNEASYDLSRVGRMKFNTRTYE 417 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 418 QKLSEDQQQSWYGRLLNETLAGAAEKGGFILSTEDIVASIATLVELRNGHGEVDDIDHLG 477 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + D++MP DLINAKPV +A+ EFF SS Sbjct: 478 NRRVRSVGELTENQFRSGLARVERAVKERLNQAEADNLMPTDLINAKPVSAAIKEFFGSS 537 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 538 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 597 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT+++ YLSA+EE IAQAN+ +D+ G Sbjct: 598 GLINSLSVYARTNDYGFLETPYRRVVDGKVTDEIDYLSAIEEGRYVIAQANAEVDKKGYL 657 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +L+ CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 658 KGDLITCREKGETIMASADRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 717 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+AE P VGTG+E VA S AIVA+R G+VE VDA RIV+R + + GVD Sbjct: 718 VPCLRAEKPLVGTGIERSVAVDSATAIVARRGGVVEYVDANRIVVRVHDEETVAGEVGVD 777 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D+IADG STDLG+LALG+NM +AFMPW+G Sbjct: 778 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLIADGASTDLGELALGQNMTIAFMPWNG 837 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ + D +TSIHIEE V+ARDTKLG EEITRDIPN+SE +DE G Sbjct: 838 YNYEDSILISEKVAAADRYTSIHIEELNVVARDTKLGAEEITRDIPNLSERMQNRLDESG 897 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 898 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 957 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 958 DVQVFTREGIQRDKRAQSIIDAELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1017 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K ++ + ++ P + W+ + DE+ + +E +K+ + + +++++ K +K Sbjct: 1018 KLGKGKEITVEYLASLPTKHDWFDIRLSDEERAKQLELIKLSLQQKREEADEQYEIKKKK 1077 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++PPGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG VD Sbjct: 1078 MTQGDELPPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRTVD 1137 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I+ ++ + + + +R+FLEK+ Sbjct: 1138 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGQRIEKMLAEQR---KMKEIRAFLEKLYNGS 1194 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G- 1232 E + D+ +L +AE K G ++PVFDGA E+ I ML +A + G Sbjct: 1195 GKKEDLKSLSDEEILTLAENLKGGATFASPVFDGAKEQEIYDMLELAYPSDDPEVQKLGF 1254 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GEPFDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1255 NDTKTQITLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1314 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G E G PESF Sbjct: 1315 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMYENIVKGEHKIEAGMPESF 1374 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL ID+E Sbjct: 1375 NVLVKEIRSLGLDIDMER 1392 >gi|86158017|ref|YP_464802.1| DNA-directed RNA polymerase subunit beta [Anaeromyxobacter dehalogenans 2CP-C] gi|115305555|sp|Q2II86|RPOB_ANADE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|85774528|gb|ABC81365.1| DNA-directed RNA polymerase subunit beta [Anaeromyxobacter dehalogenans 2CP-C] Length = 1422 Score = 1611 bits (4172), Expect = 0.0, Method: Composition-based stats. Identities = 724/1401 (51%), Positives = 1003/1401 (71%), Gaps = 30/1401 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R+ FGK +I +IP+LI +QK SYD FL ++ P++R + GLQ FKSVFPI F+ Sbjct: 10 RIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSVFPIKDFNET 69 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 + LEFVSY + PK+DVD+C R +TY+ P+K+ +RL+V+D DE TGA+SI+D+KEQ +Y Sbjct: 70 SSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVY 129 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 G++PLMT++GTF+I G +R+VVSQLHRSPG FDHDKG++ SGKLLY RIIP +G W Sbjct: 130 FGEIPLMTENGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNARIIPYRGSW 189 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGM--------------DSEEILSTFYPKIV 237 +D EFD KDI++VRIDRRRK+P T L ALG +EEIL +Y Sbjct: 190 IDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEILKYYYDTET 249 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 G DL+ G + + + D + E +++ +K T +K L +K L Sbjct: 250 IRVEGKGKFEKDLVPDLLKGQRATRDIRDPKSSEVIVKKNRKYTESAIKKLVAAKMKSLP 309 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 + + + AED+V+ TGE+ +E + + E +EE+ I + +L++D++N Sbjct: 310 VEPEEVYTKISAEDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLFIDNLNILPA 369 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 +R+TL+ DK ++A+++IYR +RPGD T A ++F LFF++++YDLS VGR+K+N Sbjct: 370 LRDTLMQDKISTPEEAIMEIYRRLRPGDPPTPETATNLFVNLFFNAERYDLSKVGRLKLN 429 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGT--IDDIDNLGNRRVRSVGEMLKNQY 475 + ++ P + + K DI+ +++ L+DL+NGK +DDID+LGNRRVR+VGE+L+NQY Sbjct: 430 YKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRAVGELLENQY 489 Query: 476 RLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRI 535 R+GL+RMER+IKER+S +I+++MP DLINAKPV + + EFF SSQLSQ + N LS + Sbjct: 490 RIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEV 549 Query: 536 THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 TH RRLSALG GG+ R RAG E+RDVH THYGRICP ET EG NIGL++SL+++ARVN Y Sbjct: 550 THKRRLSALGPGGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASLSTYARVNEY 609 Query: 596 GFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 GF+ETPYRKV G+VT++V + SA+EEE IAQAN+ +D+ G+FTE V+CR GE I Sbjct: 610 GFVETPYRKVEKGRVTDEVTFYSALEEEKHIIAQANAPVDKKGNFTEAKVWCRKEGEYIY 669 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 V +++D +D SP Q+VS+AASL+PFLENDD+NR LMG NMQRQAVPLL+ +AP VGTG+ Sbjct: 670 VRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRTQAPLVGTGI 729 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNT 774 E++VA+ SG VAKR G+V+ VDA RIV+++ + VDIY L+K+QRSNQNT Sbjct: 730 EAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLIKYQRSNQNT 789 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+P+VK G+ VR+ D+IADGP+T++G+LALG+N++VAFMPW GYNFEDS+L+SER++ Sbjct: 790 CINQKPIVKPGERVRKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFEDSILLSERLI 849 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 EDVFTS+HIEEFE +ARDTKLG EEITRDIPNV EE LK++DE GII +GAEV PGDIL Sbjct: 850 KEDVFTSVHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEVKPGDIL 909 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGKITPKGE+ ++PEEKLLRAIFGEKA DVRD+SLRVP GVSGTV++ ++F+R G++K+E Sbjct: 910 VGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVFSRKGVEKDE 969 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV------SGPKGFKKSTVL 1008 R+ ++E + L +D++DE I+ + + ++ +L G+ G + KK VL Sbjct: 970 RAKAIEEMEEAKLLKDQNDEIRIIQDSAFQKIRRLLLGKEVTARLVDDKGEQLLKKGDVL 1029 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPP 1068 L+ P+ W + AV + VQ + +E K +++ F KI +++ GD++PP Sbjct: 1030 DDALLDTVPQRYWGEIAVAGD-VQDLARKIIDNFEEQKELVKLLFGEKIGRLKKGDELPP 1088 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV+++VKV+VA+KR + GDKMAGRHGNKG+VSR+LP ED+P+L+DGTPVDIVLNPLGVP Sbjct: 1089 GVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVDIVLNPLGVP 1148 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDY 1188 SRMNVGQI ETHLGWA +G +++ +I + G +++++ Sbjct: 1149 SRMNVGQILETHLGWAARNVGLRLQEMIEKEYGPEQLRKKLRAAFAGTEGGPASDRLAAL 1208 Query: 1189 DDD----SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 DD + ++A++ + G+ V+TPVFDGA E+ + +++ + QSIL+DG TGEP Sbjct: 1209 IDDVPEKELPKLAQKLRRGMHVATPVFDGAREDEMKALMEEG--SATLQSILFDGRTGEP 1266 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 FD+ VTVG +YMLKL+H+V +K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++A Sbjct: 1267 FDQDVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEA 1326 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAAY LQE LT+KSDDVVGRTR+YE+IV G +T E+G PESFNVL+KE+Q+L L ++L Sbjct: 1327 YGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENTLESGLPESFNVLIKELQSLALDVELL 1386 Query: 1365 NSRTKNSAKMEEIPDFNKCEL 1385 + +A+ D L Sbjct: 1387 ETPEAQAAREAAERDLGGGPL 1407 >gi|113968537|ref|YP_732330.1| DNA-directed RNA polymerase subunit beta [Shewanella sp. MR-4] gi|113883221|gb|ABI37273.1| DNA-directed RNA polymerase, beta subunit [Shewanella sp. MR-4] Length = 1325 Score = 1611 bits (4171), Expect = 0.0, Method: Composition-based stats. Identities = 700/1346 (52%), Positives = 955/1346 (70%), Gaps = 25/1346 (1%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 +DIP L+ +Q S+ F D GL+AAF+SVFPI +FSG + L++VSY+ Sbjct: 2 LDIPYLLSIQLDSFKKF----TDQDPTGERGLEAAFRSVFPIKSFSGNSELQYVSYKLGE 57 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 P FDV +C R +TY+ PL++ LR++++D + G ++KDIKEQ +YMGD+PLMT +GT Sbjct: 58 PVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TVKDIKEQEVYMGDIPLMTDNGT 115 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 FVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY RIIP +G W+D EFD KD + Sbjct: 116 FVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDALF 175 Query: 204 VRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 VRIDRRRK+P T L AL ++EIL F+ ++ + + D L L G S Sbjct: 176 VRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLVMTLVPERL-RGETASYD 234 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 + D + G ++E+G+++T+ ++ L++ L + + + G Y A+D ++ +TGE+ + Sbjct: 235 IKDAE-GSVLVEAGRRITARHIRQLEKTNTTELEVPVEYIVGKYAAQDYIDPDTGEVLVS 293 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 A I + L ++ + I+++ LY++ +++ AYI +TL D +R +AL++IYR+MRP Sbjct: 294 ANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTLRIDPTTNRLEALVEIYRMMRP 353 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKIL 443 G+ T AE++F LFF ++YDLS VGR+K N RL++ + + KEDI+A++K + Sbjct: 354 GEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEGSGVLSKEDIVAVMKNI 413 Query: 444 VDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL 503 + +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ER+++ER+S D++ +MPQDL Sbjct: 414 IHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLSLGDLNELMPQDL 473 Query: 504 INAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHP 563 INAKP+ +AV EFF SSQLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHP Sbjct: 474 INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHP 533 Query: 564 THYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEE 623 THYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPYRKV DG +T+DV YLSA+EE Sbjct: 534 THYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVDGVITDDVEYLSAIEEG 593 Query: 624 NRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLE 683 IAQAN +D G EE + CR GE + I ++D SP+Q++S+AASLIPFLE Sbjct: 594 RYVIAQANIEVDSQGRMVEEQIACRHKGESTFMRASDIQYMDVSPQQIISVAASLIPFLE 653 Query: 684 NDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRI 743 +DD+NR LMG NMQRQAVP LK+E P VGTG+E +A SG + AKR G+++ VDA RI Sbjct: 654 HDDANRALMGANMQRQAVPTLKSEKPLVGTGIERTLAVDSGVVVAAKRGGVIDYVDASRI 713 Query: 744 VIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLG 803 V++ E +L P +G+DIY L K+ RSNQNTC+NQRP VG+ V R D++ADGPSTDLG Sbjct: 714 VVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGEPVVRGDVLADGPSTDLG 773 Query: 804 DLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITR 863 DLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+IHI+E +ARDTKLG EEIT Sbjct: 774 DLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGSEEITA 833 Query: 864 DIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVD 923 DIPNV E L +DE GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA D Sbjct: 834 DIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 893 Query: 924 VRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIY 983 V+D+SLRVP+ V GT++DV++F R G++K++R+I +E I +D +E IL+ + Sbjct: 894 VKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAIEIEEMHIAQARKDLGEEFKILEEGVL 953 Query: 984 SRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYE 1043 SR +L + I+ PR + DE Q +E L Q+E Sbjct: 954 SRARNLLLSAG-------------FTEAQIAALPRKDVLVQVIDDETKQTELEQLAEQHE 1000 Query: 1044 TSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRI 1103 K+ + +F+ K KI GDD+ PGVL++VKV++A+KR IQ GDKMAGRHGNKG++S+I Sbjct: 1001 ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI 1060 Query: 1104 LPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANG 1163 P EDMP+ + G PVDIVLNPLGVPSRMN+GQ+ E HLG A G+G KI +++ D + G Sbjct: 1061 NPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGNKIAAMLEDQREKG 1120 Query: 1164 DISPLRSFLEKVIGTGSHTE---KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAIN 1220 ++ +RS++++V G + I + DD +LR+A K G+PV+TP FDGA E+ I Sbjct: 1121 -LAEVRSYIKQVYELGDEVQQRVDIDSFTDDELLRLANNLKGGIPVATPAFDGAKEKEIK 1179 Query: 1221 SMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQ 1280 ML +A L SGQ L+DG TG F+RPVTVGY+YMLKLNH+V DK++ARSTGSYSLVTQ Sbjct: 1180 QMLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1239 Query: 1281 QPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFE 1340 QPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV GN + Sbjct: 1240 QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQ 1299 Query: 1341 TGTPESFNVLVKEMQALGLSIDLENS 1366 G PESFNVL+KE+++LG++I+L+ Sbjct: 1300 PGMPESFNVLLKEIRSLGINIELDQE 1325 >gi|254468259|ref|ZP_05081665.1| DNA-directed RNA polymerase, beta subunit [beta proteobacterium KB13] gi|207087069|gb|EDZ64352.1| DNA-directed RNA polymerase, beta subunit [beta proteobacterium KB13] Length = 1389 Score = 1610 bits (4168), Expect = 0.0, Method: Composition-based stats. Identities = 707/1398 (50%), Positives = 963/1398 (68%), Gaps = 43/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + ++P L+ +Q SY +L M+I DER ++GLQ F SV Sbjct: 1 MSYSFTEKKRLRKNFAKRQTVAEVPYLLSMQLESYKDYLQMDIPADERKDQGLQNTFNSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI++ SG A L+FVSY FDV +C R LT+ VPL++ +RL + D D ++ Sbjct: 61 FPISSHSGNAKLDFVSYSLGKVVFDVKECQLRGLTFGVPLRVKVRLSIMDKDAS--EPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT +G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEMPLMTNNGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+PVT+ L ALG+ SEEILSTFY +S Sbjct: 179 RIIPYRGSWLDFEFDPKDYLYFRIDRRRKMPVTTLLKALGLSSEEILSTFYDFDQFSFVK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + F L L G + D GE ++ K++T ++ +++ +K + ++ + Sbjct: 239 NKLNFTLYPERL-RGEIAKFDIADKK-GELIVAKDKRITVKHIREIEKANIKKIEVSEEF 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +A+ I++ +TGE+ EA I E+ L +I I +I LY + ++ +I +TL Sbjct: 297 IIGRKLAKGIIDADTGEVIAEANAEITEELLAQIKELSINEIETLYYNDLDQGDFISHTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR--- 419 TD+ D A + IYR+MRPG+ T +++F +FF D+YDLS VGR+K N R Sbjct: 357 STDEIPDEYSARVAIYRMMRPGEPPTEDSVKALFEGMFFSEDRYDLSNVGRMKFNRRAYP 416 Query: 420 ----------------LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRR 463 + + + +DI+A++ ILV+LRNG+G IDDID+LGNRR Sbjct: 417 KSFEKSAGWMQRFYQRVGEQNDEGAGILSIDDILAVVGILVELRNGRGEIDDIDHLGNRR 476 Query: 464 VRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLS 523 +RSVGE+++NQ+R GL+R+ER++KER+ + D++MP DLIN+KP+ SA+ EFF SSQLS Sbjct: 477 IRSVGELVENQFRTGLVRVERAVKERLGQAEADNLMPHDLINSKPISSAIREFFGSSQLS 536 Query: 524 QLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLV 583 Q + N LS ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+ Sbjct: 537 QFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHSTHYGRVCPIETPEGPNIGLI 596 Query: 584 SSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEE 643 +SL FA+ N YGF+ETPYR+V +GKVT ++ YLSA+EE IAQANS LDE +F EE Sbjct: 597 NSLALFAKTNKYGFLETPYRRVENGKVTAEIDYLSAIEESQFTIAQANSELDEKSNFKEE 656 Query: 644 LVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPL 703 LV R E +L +I+++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP Sbjct: 657 LVSSRFKNEFVLSNNNEINYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPC 716 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 L+AE VGTG+E VA SG + A+R G+V+ VD+ RIV++ + + GVDIY Sbjct: 717 LRAEKAVVGTGIERTVAMDSGTTVQAERGGVVDYVDSRRIVVKVNDKETSAEDVGVDIYN 776 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 L K+ RSNQNT +NQ+PLVK+GD + R DIIADG STD+G+LALG+NMLV FMPW+GYNF Sbjct: 777 LTKYTRSNQNTNINQKPLVKIGDTIARGDIIADGASTDVGELALGQNMLVGFMPWNGYNF 836 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIIC 883 EDS+LISE++V++D +TS+HIEE V++RDTKLGPEEITRDI N+SE L +DE GII Sbjct: 837 EDSILISEKVVADDRYTSVHIEELSVVSRDTKLGPEEITRDISNLSERMLGRLDESGIIY 896 Query: 884 VGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVR 943 VGAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV+ Sbjct: 897 VGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQ 956 Query: 944 IFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK 1003 +F R GID++ER+ + +EQ+ +D +D+ I++ + ++R+ ++L G+ GPKG K Sbjct: 957 VFTREGIDRDERAEQIIQEQLSHFEQDLNDQLRIVEDDTFARIEKLLVGKTVSGGPKGIK 1016 Query: 1004 KSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWG 1063 K ++ D + E R W+ + D+K +++ESLK +K + R++ K +K+ G Sbjct: 1017 KGDKVTKDQLKEIGRYDWFDIRLADDKDSKSLESLKENLNKAKKDFDLRYEEKKQKLTQG 1076 Query: 1064 DDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLN 1123 D++ PGV ++VKV++A+KR IQ GDKMAGRHGNKG++S+I+P EDMP + DGT +DIVLN Sbjct: 1077 DELQPGVQKMVKVYLAVKRRIQPGDKMAGRHGNKGVISKIVPVEDMPHMADGTTLDIVLN 1136 Query: 1124 PLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHT 1182 PLGVPSRMN+GQI E HLGWA GLG +I ++ K ++ +R LEK+ Sbjct: 1137 PLGVPSRMNIGQILEVHLGWAAKGLGNRIDEML---KEERKVAEVRDLLEKIYNESSGKQ 1193 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS-------- 1234 E I D V+ +A K GVP +T VFDGA E I ML +A G Sbjct: 1194 EDIKSLKDGEVIEMAHNLKQGVPFATSVFDGAAESDIQYMLDLAY--PDGHELTKKLNFS 1251 Query: 1235 ------ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 L+DG TGE F+RPVTVGY+++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1252 AKKTQLQLFDGRTGEAFERPVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQ 1311 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV GRT+VYE+IV G + G PESFN Sbjct: 1312 FGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVSGRTKVYENIVKGEHKIDAGMPESFN 1371 Query: 1349 VLVKEMQALGLSIDLENS 1366 VL KE+++L + IDL+ Sbjct: 1372 VLTKEIRSLAIDIDLDRD 1389 >gi|119947049|ref|YP_944729.1| DNA-directed RNA polymerase, beta subunit [Psychromonas ingrahamii 37] gi|158513125|sp|A1T065|RPOB_PSYIN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|119865653|gb|ABM05130.1| DNA-directed RNA polymerase, beta subunit [Psychromonas ingrahamii 37] Length = 1346 Score = 1609 bits (4167), Expect = 0.0, Method: Composition-based stats. Identities = 695/1369 (50%), Positives = 979/1369 (71%), Gaps = 27/1369 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G + R+RK FGK P++++ P L+ +Q S+ F+ +++ GL+AAF S+ Sbjct: 1 MGYSYTEKKRIRKDFGKRPQVMEKPYLLSIQLDSFKRFIEVDLT----GEVGLEAAFNSI 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ L++ LRL+++D D G ++ Sbjct: 57 FPIASYSGTSELQYVSYRLGEPVFDVKECQIRGVTYSASLRVKLRLVIYDRDAPAG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDI+EQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 115 KDIREQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P T L AL ++EIL+ FY + + Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIMLRALEYSTQEILAIFYDTTKFDIKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L A D + G + G+ +E GK++T+ +K L++ + L + + Sbjct: 235 GVISMSLIA-DRLRGEMALFDI--AANGKIYVEQGKRITARHIKQLEKDNINTLDVPVEY 291 Query: 303 LCGLYV--AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + + A+D ++ ETGEI + A D++ + L E+ S I I+Y + ++ ++I + Sbjct: 292 IAEKDLVVAKDYISKETGEIIVSANDILTLEILAELTQSGITSFDIIYTNELDCGSFISD 351 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D + +R +AL++IYR+MRPG+ T AE +F+ LFF ++Y+LS VGR+K N R+ Sbjct: 352 TLRVDSSSNRLEALVEIYRMMRPGEPPTKDAAEGLFHNLFFAEERYELSKVGRMKFNRRV 411 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 +D + + K+DI++++K L+ +RNG G +DDID+LGNRR+R VGEM +NQ+R+GL+ Sbjct: 412 GIDGDEGAGILSKDDILSVMKTLIAIRNGDGIVDDIDHLGNRRIRCVGEMAENQFRVGLV 471 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER+++ER+S D+D+ MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR Sbjct: 472 RVERAVRERLSLGDLDATMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRR 531 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +F+R N+YGF+ET Sbjct: 532 ISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLATFSRTNSYGFLET 591 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV +GK T+ V YLSA+EE + IAQA++S+DE+G EEL+ CR GE + Sbjct: 592 PYRKVENGKPTDQVEYLSAIEEGSFVIAQASASIDENGLLDEELIPCRHKGESTFLSPAD 651 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ID++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E +A Sbjct: 652 IDYMDVSPQQIISVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERRLA 711 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG I+AKR+G+++ VDA RIV++ + +L P +G+DIY L K+ RSNQNTC+NQ+P Sbjct: 712 IDSGVTIIAKRSGVIDYVDASRIVVKVDDNELLPGEAGIDIYNLTKYTRSNQNTCINQKP 771 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 + G+ + R D++ADGPSTD+GDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT Sbjct: 772 TCEPGEPIVRGDVLADGPSTDMGDLALGQNMKIAFMPWNGYNFEDSILISERVSQEDRFT 831 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 +IHI+EF +AR+TKLG EEI+ DIPNV E L +DE GI+ VGAEV PGDILVGK+TP Sbjct: 832 TIHIQEFSCVARETKLGSEEISADIPNVGEAALSKLDESGIVYVGAEVKPGDILVGKVTP 891 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ +TPEEKLLRAIFGEKA DV+D+SLRV + TV+DV++F R G++K++R++ +E Sbjct: 892 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVAASTYATVIDVQVFTRDGVEKDKRALEIE 951 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 Q++ +D ++ IL+ IY + + IL G + + PR+Q Sbjct: 952 EMQLKAAKKDLTEKFKILENAIYEKALAILVGAGQ-------------DEARLLQMPRAQ 998 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W + + DE Q ++ + QY+ K+ + F K KI GDD+ PGV ++VKV++A+ Sbjct: 999 WLEVQIDDETKQSYLDQIITQYDEVKADYDKEFDIKRRKITQGDDLAPGVQKIVKVYLAV 1058 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 +R +Q GDKMAGRHGNKG++S I+P EDMP + G PVDIVLNPLGVPSRMN+GQ+ ETH Sbjct: 1059 RRRLQPGDKMAGRHGNKGVISNIVPVEDMPHDEFGVPVDIVLNPLGVPSRMNIGQVLETH 1118 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAE 1198 LG A G+G+K++ +I Y+ + +I+ +R F++K+ G ++D+DD++V+R+A+ Sbjct: 1119 LGLAAKGVGEKLERMI-KYQRDIEITKVREFVQKLYSFGDAPCHVDLNDFDDEAVMRLAK 1177 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 G+PV+TP FDGA+E I +LRMADL ESGQ L DG TG F+RPVTVGY+YMLK Sbjct: 1178 NLYKGLPVATPAFDGANEGEIRELLRMADLPESGQLQLTDGRTGIQFERPVTVGYMYMLK 1237 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 LNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+K Sbjct: 1238 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1297 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 SDDV GRT++Y++IV G+ E G PESFNVL+KE+++L ++I+L+ S Sbjct: 1298 SDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLSINIELDESN 1346 >gi|296112484|ref|YP_003626422.1| DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis RH4] gi|295920178|gb|ADG60529.1| DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis RH4] gi|326567994|gb|EGE18086.1| DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis BC7] gi|326577818|gb|EGE27686.1| DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis O35E] Length = 1363 Score = 1609 bits (4167), Expect = 0.0, Method: Composition-based stats. Identities = 703/1374 (51%), Positives = 971/1374 (70%), Gaps = 20/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY+ FL + P R N GLQAAF S+ Sbjct: 1 MAYSYTEKKRIRKSFSKLPDVMDVPYLLAIQVDSYEQFLQEHKKPKARANIGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A L+FV Y P+FD +C+ R T+A PL++ +RLI+ D + T I Sbjct: 61 FPIESHSGNAQLQFVEYYLGEPEFDERECIMRGSTFAAPLRVKIRLIIKDKENKTA---I 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQS+YMG++PLMT +GTF+I G +R++VSQLHRSPG+ FDHDKG++ SGK+LY Sbjct: 118 KDVREQSVYMGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLYNA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++ RIDRRRK+ T L A+GMD+ +IL F+ K+ + Sbjct: 178 RIIPYRGSWLDFEFDAKDLVYARIDRRRKLLATIILRAIGMDTAQILDQFFEKVEVFKGD 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + L A D + G ++ D G ++E G+++ + +K + G+ L + + Sbjct: 238 ESFEIELVA-DRLKGEMAQFDIIGPD-GNVIVEQGQRINALRVKRILNSGMTKLAVPDEY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L + EDIV G+ E+ + A +ID + L ++ ++ IL+ + +++ AYI +TL Sbjct: 296 LYERIIGEDIVVGD--EVLVRANTLIDHEILVKLAEKNVQSFKILFTNDIDHGAYIADTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE +F +FF ++YDLS VGR+K N RL Sbjct: 354 RADTIVTREEALIEIYKVMRPGEPPTLDTAEKLFESMFFSQERYDLSNVGRMKFNRRLGR 413 Query: 423 DTPD--------DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + D + + +DI+ ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ Sbjct: 414 EFIDTDDMDVQREQGVLSNQDIVDVLKELIEIRNGRGEVDDIDHLGNRRIRSVGEMTENQ 473 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL R+ER++KER+++ D D++ PQDLIN+KPV +++ EFF SSQLSQ + N LS Sbjct: 474 FRIGLARVERAVKERLTTADSDNLSPQDLINSKPVAASIKEFFGSSQLSQFMDQNNPLSE 533 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +FA+ N Sbjct: 534 ITHKRRVSALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLATFAKTNN 593 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYR+V DG+VT+++ Y+SA+EE IAQA+S +++ G TEE+V R GE + Sbjct: 594 FGFLETPYRRVVDGRVTDEIEYVSAIEEVGMVIAQADSPMNDKGELTEEMVSVRHDGEFV 653 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + +K+ +D SP+QVVS+AA LIPFLE+DD+NR LMG NMQRQAVP L+++ P VGTG Sbjct: 654 RMSADKVTHMDVSPRQVVSVAAGLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTG 713 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME VA+ SG +VAKR G++E+VDA RI++R E ++ +G+DIY L+K+ RSNQNT Sbjct: 714 MERHVARDSGVCVVAKRGGVIEEVDASRIIVRVNEDEMTAGEAGIDIYNLIKYTRSNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQR +V GDE+ R DI+ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V Sbjct: 774 CINQRVIVNEGDEIERGDILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILLSERVV 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED FT+IHI+E +ARDTKLGPEEIT DIPNV E L N+DE GI+ +GAEV+ GDIL Sbjct: 834 QEDRFTTIHIQELTCVARDTKLGPEEITGDIPNVGEAALANLDEAGIVYIGAEVDAGDIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGES +TPEEKLLRAIFGEKA DV+DTSLRVPS GTV+DV++F R G++K+ Sbjct: 894 VGKVTPKGESQLTPEEKLLRAIFGEKAADVKDTSLRVPSSTKGTVIDVQVFTRDGLEKDS 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ S+E+ ++ +D +E VI + R++ +L G+ G GFK T+LS+ I Sbjct: 954 RAKSIEKAMLDDYRKDLKEELVIFEAAAKGRILSLLDGKKVSGG-AGFKAGTILSTKDIE 1012 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 P +E+V + + + ++++F K K+ GDD+ GV ++V Sbjct: 1013 NLPLESLLDIQPAEEEVSERLGQIAEFLSDKQKDIDNKFTEKKRKLTQGDDLAHGVQKIV 1072 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VSRI+P EDMP+ ++G PVDIVLNPLGVPSRMN+G Sbjct: 1073 KVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPVEDMPYDENGNPVDIVLNPLGVPSRMNIG 1132 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 Q+ ETHLG A GLG KI +++ ++ +S LR FL+K+ G + D+ + Sbjct: 1133 QVLETHLGMAAKGLGDKINAML---RSQVAVSELREFLDKIYNQVGGEQVDLDSLSDEDL 1189 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L + + K GVP+ T VFDGA E I +L +ADL +GQ LYDG TG+ FDRPVTVGY Sbjct: 1190 LALCQNLKDGVPMGTAVFDGAKETQIKELLSLADLSTTGQQTLYDGRTGKKFDRPVTVGY 1249 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Y LQE Sbjct: 1250 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGATYTLQE 1309 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV G G PESFNVL KE+++LG++IDL+ + Sbjct: 1310 MLTVKSDDVEGRTRMYKNIVDGEQYMNPGMPESFNVLTKEIRSLGINIDLKEKK 1363 >gi|160873319|ref|YP_001552635.1| DNA-directed RNA polymerase subunit beta [Shewanella baltica OS195] gi|160858841|gb|ABX47375.1| DNA-directed RNA polymerase, beta subunit [Shewanella baltica OS195] Length = 1322 Score = 1609 bits (4167), Expect = 0.0, Method: Composition-based stats. Identities = 692/1343 (51%), Positives = 949/1343 (70%), Gaps = 21/1343 (1%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 +DIP L+ +Q S+ F D GL+AAF+SVFPI +FSG + L++VSY+ Sbjct: 1 MDIPYLLSIQLDSFKKF----TDQDPTGERGLEAAFRSVFPIKSFSGNSELQYVSYKLGE 56 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 P FDV +C R +TY+ PL++ LR++++D + G ++KDIKEQ +YMGD+PLMT +GT Sbjct: 57 PVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAG--TVKDIKEQEVYMGDIPLMTDNGT 114 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 FVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY RIIP +G W+D EFD KD + Sbjct: 115 FVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDALF 174 Query: 204 VRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 VRIDRRRK+P T L AL ++EIL F+ ++ + + D L L G S Sbjct: 175 VRIDRRRKLPATIMLRALEYSTQEILDLFFERVEFKIKKDTLVMALVPERL-RGETASYD 233 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 + D + G ++E+G+++T+ ++ L++ L + + + G Y A+D ++ +TGE+ + Sbjct: 234 IKDAE-GSVLVEAGRRITARHIRQLEKTNTTELEVPVEYIVGKYAAQDYIDPDTGEVLVS 292 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 A I + L ++ + I+++ LY++ +++ AYI +TL D +R +AL++IYR+MRP Sbjct: 293 ANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTLRIDSTTNRLEALVEIYRMMRP 352 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKIL 443 G+ T AE++F LFF ++YDLS VGR+K N RL++ + + KEDI+A++K + Sbjct: 353 GEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEGSGVLSKEDIVAVMKNI 412 Query: 444 VDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL 503 + +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ER+++ER+S D++ +MPQDL Sbjct: 413 IHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLSLGDLNELMPQDL 472 Query: 504 INAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHP 563 INAKP+ +AV EFF SSQLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHP Sbjct: 473 INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHP 532 Query: 564 THYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEE 623 THYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPYRKV DG +T++V YLSA+EE Sbjct: 533 THYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVIDGVITDEVEYLSAIEEG 592 Query: 624 NRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLE 683 IAQAN +D +G EE + CR GE + I ++D SP+Q++S+AASLIPFLE Sbjct: 593 RYVIAQANIEIDANGRMAEEQIACRHKGESTFMRAADIQYMDVSPQQIISVAASLIPFLE 652 Query: 684 NDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRI 743 +DD+NR LMG NMQRQAVP L++E P VGTG+E +A SG +VAKR G V+ VDA RI Sbjct: 653 HDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVDSGVVVVAKRGGFVDYVDASRI 712 Query: 744 VIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLG 803 V++ E +L P +G+DIY L K+ RSNQNTC+NQRP VG+ V R D++ADGPSTDLG Sbjct: 713 VVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGEPVVRGDVLADGPSTDLG 772 Query: 804 DLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITR 863 DLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+IHI+E +ARDTKLG EEIT Sbjct: 773 DLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGSEEITA 832 Query: 864 DIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVD 923 DIPNV E L +DE GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA D Sbjct: 833 DIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 892 Query: 924 VRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIY 983 V+D+SLRVP+ V GT++DV++F R G++K++R++ +E I +D +E IL+ + Sbjct: 893 VKDSSLRVPNSVKGTIIDVQVFIRDGVEKDKRAVEIEEMHIAQARKDLGEEFKILEEGVL 952 Query: 984 SRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYE 1043 SR +L G + I+ PR + DE Q +E L Q+E Sbjct: 953 SRARNLLIGAG-------------FTDAQIAALPRKDVLIQVIDDETKQTELEQLAEQHE 999 Query: 1044 TSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRI 1103 K+ + +F+ K KI GDD+ PGVL++VKV++A+KR IQ GDKMAGRHGNKG++S+I Sbjct: 1000 ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI 1059 Query: 1104 LPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANG 1163 P EDMP+ + G PVDIVLNPLGVPSRMN+GQ+ E H+G A G+G KI +++ + + Sbjct: 1060 CPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHMGAAAKGIGNKITAMLEEQRELA 1119 Query: 1164 DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSML 1223 ++ + ++ I + DD VLR+A K G+P++TP FDGA E+ I ML Sbjct: 1120 EVRGYIKQVYELGDEVQQRVDIDSFTDDEVLRLATNLKGGIPIATPAFDGAKEKEIKQML 1179 Query: 1224 RMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPL 1283 +A L SGQ L+DG TG F+R VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPL Sbjct: 1180 ELAGLPTSGQLKLFDGRTGNEFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1239 Query: 1284 GGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGT 1343 GGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV GN + G Sbjct: 1240 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM 1299 Query: 1344 PESFNVLVKEMQALGLSIDLENS 1366 PESFNVL+KE+++LG++I+L+ + Sbjct: 1300 PESFNVLLKEIRSLGINIELDQA 1322 >gi|326564349|gb|EGE14578.1| DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis 46P47B1] gi|326566148|gb|EGE16304.1| DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis 103P14B1] gi|326570704|gb|EGE20738.1| DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis BC1] gi|326571259|gb|EGE21282.1| DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis BC8] gi|326573059|gb|EGE23032.1| DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis CO72] gi|326577243|gb|EGE27136.1| DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis 101P30B1] Length = 1363 Score = 1609 bits (4166), Expect = 0.0, Method: Composition-based stats. Identities = 704/1374 (51%), Positives = 971/1374 (70%), Gaps = 20/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY+ FL + P R N GLQAAF S+ Sbjct: 1 MAYSYTEKKRIRKSFSKLPDVMDVPYLLAIQVDSYEQFLQEHKKPKARANIGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A L+FV Y P+FD +C+ R T+A PL++ +RLI+ D + T I Sbjct: 61 FPIESHSGNAQLQFVEYYLGEPEFDERECIMRGSTFAAPLRVKIRLIIKDKENKTA---I 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQS+YMG++PLMT +GTF+I G +R++VSQLHRSPG+ FDHDKG++ SGK+LY Sbjct: 118 KDVREQSVYMGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLYNA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++ RIDRRRK+ T L A+GMD+ +IL F+ K+ + Sbjct: 178 RIIPYRGSWLDFEFDAKDLVYARIDRRRKLLATIILRAIGMDTAQILDQFFEKVEVFKGD 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + L A D + G +V D G ++E G+++ + +K + G+ L + + Sbjct: 238 ESFEIELVA-DRLKGEMAQFDIVGPD-GNVIVEQGQRINALRVKRILNSGMTKLAVPDEY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L + EDIV G+ E+ + A +ID + L ++ ++ IL+ + +++ AYI +TL Sbjct: 296 LYERIIGEDIVVGD--EVLVRANTLIDHEILVKLAEKNVQSFKILFTNDIDHGAYIADTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE +F +FF ++YDLS VGR+K N RL Sbjct: 354 RADTIVTREEALIEIYKVMRPGEPPTLETAEKLFESMFFSQERYDLSNVGRMKFNRRLGR 413 Query: 423 DTPD--------DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + D + + +DI+ ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ Sbjct: 414 EFIDTDDMDVQREQGVLSNQDIVDVLKELIEIRNGRGEVDDIDHLGNRRIRSVGEMTENQ 473 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL R+ER++KER+++ D D++ PQDLIN+KPV +++ EFF SSQLSQ + N LS Sbjct: 474 FRIGLARVERAVKERLTTADSDNLSPQDLINSKPVAASIKEFFGSSQLSQFMDQNNPLSE 533 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +FA+ N Sbjct: 534 ITHKRRVSALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLATFAKTNN 593 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYR+V DG+VT+++ Y+SA+EE IAQA+S +++ G TEE+V R GE + Sbjct: 594 FGFLETPYRRVVDGRVTDEIEYVSAIEEVGMVIAQADSPMNDKGELTEEMVSVRHDGEFV 653 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + +K+ +D SP+QVVS+AA LIPFLE+DD+NR LMG NMQRQAVP L+++ P VGTG Sbjct: 654 RMSADKVTHMDVSPRQVVSVAAGLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTG 713 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME VA+ SG +VAKR G++E+VDA RI++R E ++ +G+DIY L+K+ RSNQNT Sbjct: 714 MERHVARDSGVCVVAKRGGVIEEVDASRIIVRVNEDEMTAGEAGIDIYNLIKYTRSNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQR +V GDE+ R DI+ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V Sbjct: 774 CINQRVIVNEGDEIERGDILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILLSERVV 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED FT+IHI+E +ARDTKLGPEEIT DIPNV E L N+DE GI+ +GAEV+ GDIL Sbjct: 834 QEDRFTTIHIQELTCVARDTKLGPEEITGDIPNVGEAALANLDEAGIVYIGAEVDAGDIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGES +TPEEKLLRAIFGEKA DV+DTSLRVPS GTV+DV++F R G++K+ Sbjct: 894 VGKVTPKGESQLTPEEKLLRAIFGEKAADVKDTSLRVPSSTKGTVIDVQVFTRDGLEKDS 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ S+E+ ++ +D +E VI + R++ +L G+ G GFK T+LS+ I Sbjct: 954 RAKSIEKAMLDDYRKDLKEELVIFEAAAKGRILSLLDGKKVSGG-AGFKAGTILSTKDIE 1012 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 P +E+V + + + ++++F K K+ GDD+ GV ++V Sbjct: 1013 NLPLESLLDIQPAEEEVSERLGQIAEFLSDKQKDIDNKFTEKKRKLTQGDDLAHGVQKIV 1072 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VSRI+P EDMP+ ++G PVDIVLNPLGVPSRMN+G Sbjct: 1073 KVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPVEDMPYDENGNPVDIVLNPLGVPSRMNIG 1132 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 Q+ ETHLG A GLG KI +++ ++ +S LR FL+K+ G + D+ + Sbjct: 1133 QVLETHLGMAAKGLGDKINAML---RSQVAVSELREFLDKIYNQVGGEQVDLDSLSDEDL 1189 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L + + K GVP+ T VFDGA E I +L +ADL +GQ LYDG TG+ FDRPVTVGY Sbjct: 1190 LALCQNLKDGVPMGTAVFDGAKETQIKELLSLADLSTTGQQTLYDGRTGKKFDRPVTVGY 1249 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Y LQE Sbjct: 1250 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGATYTLQE 1309 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV G G PESFNVL KE+++LG++IDL+ + Sbjct: 1310 MLTVKSDDVEGRTRMYKNIVDGEQYMNPGMPESFNVLTKEIRSLGINIDLKEKK 1363 >gi|108761304|ref|YP_631280.1| DNA-directed RNA polymerase subunit beta [Myxococcus xanthus DK 1622] gi|122389067|sp|Q1D7U3|RPOB_MYXXD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|108465184|gb|ABF90369.1| DNA-directed RNA polymerase, beta subunit [Myxococcus xanthus DK 1622] Length = 1408 Score = 1609 bits (4166), Expect = 0.0, Method: Composition-based stats. Identities = 733/1376 (53%), Positives = 989/1376 (71%), Gaps = 26/1376 (1%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 RVRK F K +IIDIP+LI +QK SY+ FL +IA D+R + GLQ FKSVFPI F+ Sbjct: 10 RVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAADKREDLGLQGVFKSVFPIRDFNET 69 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 + LEFVSY + PK+DVD+C R +TY+ P+K+ +RL+V+D DE TGA+SI+D+KEQ +Y Sbjct: 70 SSLEFVSYHLERPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVY 129 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 G++PLMT++GTF+I G +R+VVSQLHRSPG FDHDKG++ SGKLLY RIIP +G W Sbjct: 130 FGEIPLMTQNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNARIIPYRGSW 189 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGM--------------DSEEILSTFYPKIV 237 +D EFD KD+++VRIDRRRK+P T + ALG +EEIL+ +Y Sbjct: 190 IDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVPDTAKKNPLEFKGSTEEILNYYYATET 249 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 +L+ G + + + TGE +++ +K T +K L+ +K L Sbjct: 250 IYLHSAEEFEKSVELELLPGQRATRDI-KAKTGELIVKKNRKFTRAAIKKLEAAKMKTLP 308 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 I +D L A D+V G + +E + + ++ ++E+ I++ +L++D++N Y Sbjct: 309 IDADELFTKVSAYDVVEETNGVVLLECNEEVTQEKVDELLKHGIKEFKVLFIDNLNVGPY 368 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 +R TL+ DK + + ++++IYR +RPGD T A ++F LFF+ ++YDLS VGR+K+N Sbjct: 369 LRETLMLDKLETPEQSIMEIYRRLRPGDPPTPETAINLFTNLFFNPERYDLSKVGRLKLN 428 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 + L+ P D + + K DI+ +I+ L+DL+NGKGTIDDID+LGNRRVR+VGE+L+NQYR+ Sbjct: 429 FKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGELLENQYRI 488 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL+RMER+IKER+S +I+++MP DLINAKPV + + EFF SSQLSQ + N LS +TH Sbjct: 489 GLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEVTH 548 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL+++ARVN +GF Sbjct: 549 KRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTYARVNEFGF 608 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 +ETPYRKV G VTNDV + SA+EEE IAQAN+ D+ G F LV R GE + Sbjct: 609 VETPYRKVEAGVVTNDVAFYSALEEEKHTIAQANAETDKKGKFANALVSSRRGGEFVQAR 668 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 E +D +D SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL+ AP VGTG+ES Sbjct: 669 AEDVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAPLVGTGIES 728 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 +VA+ SG VA+R GIVE VDA RIV+++ L TS VDIY L+K+QRSNQNTC+ Sbjct: 729 IVARDSGVTCVARRDGIVESVDAGRIVVKADVPASLSDVTSEVDIYNLLKYQRSNQNTCL 788 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQ+P++ GD V + D+IADGP+T+ G+LALG+N++VAFMPW GYNFEDS+LISER++ + Sbjct: 789 NQKPIISKGDRVMKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSILISERILKD 848 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEEFE +ARDTKLG EEITRDIPNV EE LK++DE GII +GAEV PGD+LVG Sbjct: 849 DVFTSIHIEEFECIARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEVKPGDVLVG 908 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 KITPKGE+ ++PEEKLLRAIFGEKA DVRD+SLRVP GV GTV++ ++F+R G++K+ER+ Sbjct: 909 KITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRKGVEKDERA 968 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC------GQNAVSGPKGFKKSTVLSS 1010 +E + L +D++DE +L + + R+ ++ G KK +L Sbjct: 969 KQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVRTKEVQGKLVDDKGKILLKKGDILDD 1028 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 +L+S P W + +V D + + + E +K ++ F KI +I+ GD++PPGV Sbjct: 1029 ELLSTVPYKYWGEISVGDP-LDSRLRDILRNLEETKEAVKLAFGEKIARIKKGDELPPGV 1087 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +++VKV+VA+KR + GDKMAGRHGNKG+VSRILP EDMP+L+DG PVDIVLNPLGVPSR Sbjct: 1088 IKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVDIVLNPLGVPSR 1147 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MN+GQI ETHLGWA G G+ ++ + +AN ++ L+ + + E + DD Sbjct: 1148 MNIGQILETHLGWAAKGTGEALQRYV---EANWSSDAIKERLKVIYSDPAFGEFLDKLDD 1204 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 + + ++ + K G+ V+TPVFDGA E I+++L L SGQ +L+DG TGEPFD+ VT Sbjct: 1205 EEIKQLCLRSKRGIHVATPVFDGAQETEIHALLDEGQLPRSGQMVLFDGRTGEPFDQNVT 1264 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG +YMLKL+H+V +K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY Sbjct: 1265 VGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYT 1324 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 LQE LT+KSDDVVGRTR+YE+IV G++ E+G PESFNVL+KE+Q+L L ++L S Sbjct: 1325 LQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLLKELQSLALDVELLES 1380 >gi|197122676|ref|YP_002134627.1| DNA-directed RNA polymerase subunit beta [Anaeromyxobacter sp. K] gi|220917459|ref|YP_002492763.1| DNA-directed RNA polymerase, beta subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|226699366|sp|B4UDT2|RPOB_ANASK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765267|sp|B8JB70|RPOB_ANAD2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|196172525|gb|ACG73498.1| DNA-directed RNA polymerase, beta subunit [Anaeromyxobacter sp. K] gi|219955313|gb|ACL65697.1| DNA-directed RNA polymerase, beta subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 1422 Score = 1609 bits (4166), Expect = 0.0, Method: Composition-based stats. Identities = 722/1401 (51%), Positives = 1001/1401 (71%), Gaps = 30/1401 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R+ FGK +I +IP+LI +QK SYD FL ++ P++R + GLQ FKSVFPI F+ Sbjct: 10 RIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSVFPIKDFNET 69 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 + LEFVSY + PK+DVD+C R +TY+ P+K+ +RL+V+D DE TGA+SI+D+KEQ +Y Sbjct: 70 SSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVY 129 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 G++PLMT++GTF+I G +R+VVSQLHRSPG FDHDKG++ SGKLLY RIIP +G W Sbjct: 130 FGEIPLMTENGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNARIIPYRGSW 189 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGM--------------DSEEILSTFYPKIV 237 +D EFD KDI++VRIDRRRK+P T L ALG +EEIL +Y Sbjct: 190 IDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEILKYYYDTET 249 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 G DL+ G + + + D + E +++ +K T +K L +K L Sbjct: 250 IRIEGKGKYEKDLVPDLLKGQRATRDIRDPKSNEVIVKKNRKYTESAIKKLVAAKMKSLP 309 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 + + + AED+V+ TGE+ +E + + E +EE+ I + +L++D++N Sbjct: 310 VEPEEVYTKISAEDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLFIDNLNILPA 369 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 +R+TL+ DK ++A+++IYR +RPGD T A ++F LFF++++YDLS VGR+K+N Sbjct: 370 LRDTLMQDKISTPEEAIMEIYRRLRPGDPPTPETATNLFVNLFFNAERYDLSKVGRLKLN 429 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGT--IDDIDNLGNRRVRSVGEMLKNQY 475 + ++ P + + K DI+ +++ L+DL+NGK +DDID+LGNRRVR+VGE+L+NQY Sbjct: 430 YKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRAVGELLENQY 489 Query: 476 RLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRI 535 R+GL+RMER+IKER+S +I+++MP DLINAKPV + + EFF SSQLSQ + N LS + Sbjct: 490 RIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEV 549 Query: 536 THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 TH RRLSALG GG+ R RAG E+RDVH THYGRICP ET EG NIGL++SL+++ARVN Y Sbjct: 550 THKRRLSALGPGGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASLSTYARVNEY 609 Query: 596 GFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 GF+ETPYRKV G+VT++V + SA+EEE IAQAN+ +D+ G+FTE V+CR GE I Sbjct: 610 GFVETPYRKVEKGRVTDEVTFYSALEEEKHIIAQANAPVDKKGNFTEAKVWCRKEGEYIY 669 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 V +++D +D SP Q+VS+AASL+PFLENDD+NR LMG NMQRQAVPLL+ +AP VGTG+ Sbjct: 670 VRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRTQAPLVGTGI 729 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNT 774 E++VA+ SG VAKR G+V+ VDA RIV+++ + VDIY L+K+QRSNQNT Sbjct: 730 EAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLIKYQRSNQNT 789 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+P+VK G+ V++ D+IADGP+T++G+LALG+N++VAFMPW GYNFEDS+L+SER++ Sbjct: 790 CINQKPIVKPGERVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFEDSILLSERLI 849 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 EDVFTS+HIEEFE +ARDTKLG EEITRDIPNV EE LK++DE GII +GAEV PGDIL Sbjct: 850 KEDVFTSVHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEVKPGDIL 909 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGKITPKGE+ ++PEEKLLRAIFGEKA DVRD+SLRVP GVSGTV++ ++F+R G++K+E Sbjct: 910 VGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVFSRKGVEKDE 969 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV------SGPKGFKKSTVL 1008 R+ ++E + L +D++DE I+ + + ++ +L G+ G + KK VL Sbjct: 970 RAKAIEEMEEAKLLKDQNDEIKIIQDSAFQKIRRLLLGKEVTARLVDDKGEQLLKKGDVL 1029 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPP 1068 L+ P+ W + AV + VQ + +E K +++ F KI +++ GD++PP Sbjct: 1030 DDALLDTVPQRYWGEIAVAGD-VQDLARKIIENFEEQKELVKLLFGEKIGRLKKGDELPP 1088 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV+++VKV+VA+KR + GDKMAGRHGNKG+VSR+LP ED+P+L+DGTPVDIVLNPLGVP Sbjct: 1089 GVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVDIVLNPLGVP 1148 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDY 1188 SRMNVGQI ETHLGWA +G +++ +I + G E+++ Sbjct: 1149 SRMNVGQILETHLGWAARNVGLRLQEMIEKEWGADPLRKKLKAAFAGTEGGPVGERLAAL 1208 Query: 1189 DDD----SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 +D + ++ ++ + G+ V+TPVFDGA E+ + +++ + QSIL+DG TGEP Sbjct: 1209 IEDVPEKELPKLVQKLRRGMHVATPVFDGAREDEMKALMEEG--SATLQSILFDGRTGEP 1266 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 FD+ VTVG +YMLKL+H+V +K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++A Sbjct: 1267 FDQDVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEA 1326 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAAY LQE LT+KSDDVVGRTR+YE+IV G +T E+G PESFNVL+KE+Q+L L ++L Sbjct: 1327 YGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENTLESGLPESFNVLIKELQSLALDVELL 1386 Query: 1365 NSRTKNSAKMEEIPDFNKCEL 1385 + +A+ D L Sbjct: 1387 ETPEAQAAREAAERDLGGGPL 1407 >gi|326566158|gb|EGE16313.1| DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis 12P80B1] Length = 1363 Score = 1608 bits (4165), Expect = 0.0, Method: Composition-based stats. Identities = 703/1374 (51%), Positives = 970/1374 (70%), Gaps = 20/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY+ FL + P R N GLQAAF S+ Sbjct: 1 MAYSYTEKKRIRKSFSKLPDVMDVPYLLAIQVDSYEQFLQEHKKPKARANIGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A L+FV Y P+FD +C+ R T+A PL++ +RLI+ D + T I Sbjct: 61 FPIESHSGNAQLQFVEYYLGEPEFDERECIMRGSTFAAPLRVKIRLIIKDKENKTA---I 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQS+YMG++PLMT +GTF+I G +R++VSQLHRSPG+ FDHDKG++ SGK+LY Sbjct: 118 KDVREQSVYMGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLYNA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++ RIDRRRK+ T L A+GMD+ +IL F+ K+ + Sbjct: 178 RIIPYRGSWLDFEFDAKDLVYARIDRRRKLLATIILRAIGMDTAQILDQFFEKVEVFKGD 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + L A D + G +V D G ++E G+++ + +K + G+ L + + Sbjct: 238 ESFEIELVA-DRLKGEMAQFDIVGPD-GNVIVEQGQRINALRVKRILNSGMTKLAVPDEY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L + EDIV G+ E+ + A +ID + L ++ ++ IL+ + +++ AYI +TL Sbjct: 296 LYERIIGEDIVVGD--EVLVRANTLIDHEILVKLAEKNVQSFKILFTNDIDHGAYIADTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE +F +FF ++YDLS VGR+K N RL Sbjct: 354 RADTIVTREEALIEIYKVMRPGEPPTLETAEKLFESMFFSQERYDLSNVGRMKFNRRLGR 413 Query: 423 DTPD--------DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + D + + +DI+ ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ Sbjct: 414 EFIDTDDMDVQREQGVLSNQDIVDVLKELIEIRNGRGEVDDIDHLGNRRIRSVGEMTENQ 473 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL R+ER++KER+++ D D++ PQDLIN+KPV +++ EFF SSQLSQ + N LS Sbjct: 474 FRIGLARVERAVKERLTTADSDNLSPQDLINSKPVAASIKEFFGSSQLSQFMDQNNPLSE 533 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +FA+ N Sbjct: 534 ITHKRRVSALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLATFAKTNN 593 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYR+V DG+VT+++ Y+SA+EE IAQA+S +++ G TEE+V R GE + Sbjct: 594 FGFLETPYRRVVDGRVTDEIEYVSAIEEVGMVIAQADSPMNDKGELTEEMVSVRHDGEFV 653 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + +K+ +D SP+QVVS+AA LIPFLE+DD+NR LMG NMQRQAVP L+++ P VGTG Sbjct: 654 RMSADKVTHMDVSPRQVVSVAAGLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTG 713 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME VA+ SG +VAKR G++E+VDA RI++R E ++ +G+DIY L+K+ RSNQNT Sbjct: 714 MERHVARDSGVCVVAKRGGVIEEVDASRIIVRVNEDEMTAGEAGIDIYNLIKYTRSNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQR +V GDE+ R DI+ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V Sbjct: 774 CINQRVIVNEGDEIERGDILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILLSERVV 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED FT+IHI+E +ARDTKLGPEEIT DIPNV E L N+DE GI+ +GAEV+ GDIL Sbjct: 834 QEDRFTTIHIQELTCVARDTKLGPEEITGDIPNVGEAALANLDEAGIVYIGAEVDAGDIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGES +TPEEKLLRAIFGEKA DV+DTSLRVPS GTV+DV++F R G++K+ Sbjct: 894 VGKVTPKGESQLTPEEKLLRAIFGEKAADVKDTSLRVPSSTKGTVIDVQVFTRDGLEKDS 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ S+E+ ++ +D +E VI + R++ +L G+ G GFK +LS+ I Sbjct: 954 RAKSIEKAMLDDYRKDLKEELVIFEAAAKGRILSLLDGKKVSGG-AGFKAGAILSTKDIE 1012 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 P +E+V + + + ++++F K K+ GDD+ GV ++V Sbjct: 1013 NLPLESLLDIQPAEEEVSERLGQIAEFLSDKQKDIDNKFTEKKRKLTQGDDLAHGVQKIV 1072 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VSRI+P EDMP+ ++G PVDIVLNPLGVPSRMN+G Sbjct: 1073 KVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPVEDMPYDENGNPVDIVLNPLGVPSRMNIG 1132 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 Q+ ETHLG A GLG KI +++ ++ +S LR FL+K+ G + D+ + Sbjct: 1133 QVLETHLGMAAKGLGDKINAML---RSQVAVSELREFLDKIYNQVGGEQVDLDSLSDEDL 1189 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L + + K GVP+ T VFDGA E I +L +ADL +GQ LYDG TG+ FDRPVTVGY Sbjct: 1190 LALCQNLKDGVPMGTAVFDGAKETQIKELLSLADLSTTGQQTLYDGRTGKKFDRPVTVGY 1249 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Y LQE Sbjct: 1250 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGATYTLQE 1309 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV G G PESFNVL KE+++LG++IDL+ + Sbjct: 1310 MLTVKSDDVEGRTRMYKNIVDGEQYMNPGMPESFNVLTKEIRSLGINIDLKEKK 1363 >gi|326561524|gb|EGE11867.1| DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis 7169] Length = 1363 Score = 1608 bits (4165), Expect = 0.0, Method: Composition-based stats. Identities = 703/1374 (51%), Positives = 971/1374 (70%), Gaps = 20/1374 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K P+++D+P L+ +Q SY+ FL + P R N GLQAAF S+ Sbjct: 1 MAYSYTEKKRIRKSFSKLPDVMDVPYLLAIQVDSYEQFLQEHKKPKARANIGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A L+FV Y P+FD +C+ R T+A PL++ +RLI+ D + T I Sbjct: 61 FPIESHSGNAQLQFVEYYLGEPEFDERECIMRGSTFAAPLRVKIRLIIKDKENKTA---I 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD++EQS+YMG++PLMT +GTF+I G +R++VSQLHRSPG+ FDHDKG++ SGK+LY Sbjct: 118 KDVREQSVYMGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLYNA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD+++ RIDRRRK+ T L A+GMD+ +IL F+ K+ + Sbjct: 178 RIIPYRGSWLDFEFDAKDLVYARIDRRRKLLATIILRAIGMDTAQILDQFFEKVEVFKGD 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + L A D + G +V D G ++E G+++ + +K + G+ L + + Sbjct: 238 ESFEIELVA-DRLKGEMAQFDIVGPD-GNVIVEQGQRINALRVKRILNSGMTKLAVPDEY 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L + EDIV G+ E+ + A +ID + L ++ ++ IL+ + +++ AYI +TL Sbjct: 296 LYERIIGEDIVVGD--EVLVRANTLIDHEILVKLAEKNVQSFKILFTNDIDHGAYIADTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R++AL++IY+VMRPG+ T AE +F +FF ++YDLS VGR+K N RL Sbjct: 354 RADTIVTREEALIEIYKVMRPGEPPTLDTAEKLFESMFFSQERYDLSNVGRMKFNRRLGR 413 Query: 423 DTPD--------DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + D + + +DI+ ++K L+++RNG+G +DDID+LGNRR+RSVGEM +NQ Sbjct: 414 EFIDTDDMDVQREQGVLSNQDIVDVLKELIEIRNGRGEVDDIDHLGNRRIRSVGEMTENQ 473 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL R+ER++KER+++ D D++ PQDLIN+KPV +++ EFF SSQLSQ + N LS Sbjct: 474 FRIGLARVERAVKERLTTADSDNLSPQDLINSKPVAASIKEFFGSSQLSQFMDQNNPLSE 533 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL +FA+ N Sbjct: 534 ITHKRRVSALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLATFAKTNN 593 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GF+ETPYR+V DG+VT+++ Y+SA+EE IAQA+S +++ G TEE+V R GE + Sbjct: 594 FGFLETPYRRVVDGRVTDEIEYVSAIEEVGMVIAQADSPMNDKGELTEEMVSVRHDGEFV 653 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + +K+ +D SP+QVVS+AA LIPFLE+DD+NR LMG NMQRQAVP L+++ P VGTG Sbjct: 654 RMSADKVTHMDVSPRQVVSVAAGLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTG 713 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME VA+ SG +VAKR G++E+VDA RI++R E ++ +G+DIY L+K+ RSNQNT Sbjct: 714 MERHVARDSGVCVVAKRGGVIEEVDASRIIVRVNEDEMTAGEAGIDIYNLIKYTRSNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQR +V GDE+ R DI+ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V Sbjct: 774 CINQRVIVNEGDEIERGDILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILLSERVV 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED FT+IHI+E +ARDTKLGPEEIT DIPNV E L N+DE GI+ +GAEV+ GDIL Sbjct: 834 QEDRFTTIHIQELTCVARDTKLGPEEITGDIPNVGEAALANLDEAGIVYIGAEVDAGDIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGES +TPEEKLLRAIFGEKA DV+DTSLRVPS GTV+DV++F R G++K+ Sbjct: 894 VGKVTPKGESQLTPEEKLLRAIFGEKAADVKDTSLRVPSSTKGTVIDVQVFTRDGLEKDS 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ S+E+ ++ +D +E VI + R++ +L G+ G GFK T+LS+ I Sbjct: 954 RAKSIEKAMLDDYRKDLKEELVIFEAAAKGRILSLLDGKKVSGG-AGFKAGTILSTKDIE 1012 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 P +E+V + + + ++++F K K+ GDD+ GV ++V Sbjct: 1013 NLPLESLLDIQPAEEEVSERLGQIAEFLSDKQKDIDNKFTEKKRKLTQGDDLAHGVQKIV 1072 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG+VSRI+P EDMP+ ++G PVDIVLNPLGVPSRMN+G Sbjct: 1073 KVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPVEDMPYDENGNPVDIVLNPLGVPSRMNIG 1132 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSV 1193 Q+ ETHLG A GLG KI +++ ++ +S LR FL+K+ G + ++ + Sbjct: 1133 QVLETHLGMAAKGLGDKINAML---RSQVAVSELREFLDKIYNQVGGEQVDLDSLSNEDL 1189 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L + + K GVP+ T VFDGA E I +L +ADL +GQ LYDG TG+ FDRPVTVGY Sbjct: 1190 LALCQNLKDGVPMGTAVFDGAKETQIKELLSLADLSTTGQQTLYDGRTGKKFDRPVTVGY 1249 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Y LQE Sbjct: 1250 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGATYTLQE 1309 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 MLT+KSDDV GRTR+Y++IV G G PESFNVL KE+++LG++IDL+ + Sbjct: 1310 MLTVKSDDVEGRTRMYKNIVDGEQYMNPGMPESFNVLTKEIRSLGINIDLKEKK 1363 >gi|148556370|ref|YP_001263952.1| DNA-directed RNA polymerase subunit beta [Sphingomonas wittichii RW1] gi|182676573|sp|A5VBZ8|RPOB_SPHWW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|148501560|gb|ABQ69814.1| DNA-directed RNA polymerase, beta subunit [Sphingomonas wittichii RW1] Length = 1455 Score = 1608 bits (4163), Expect = 0.0, Method: Composition-based stats. Identities = 828/1454 (56%), Positives = 1057/1454 (72%), Gaps = 90/1454 (6%) Query: 1 MA-KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 MA + V R+RK FG E++ +P+LIEVQ+ SY+ FL P + GL+ Sbjct: 1 MATQAVPATAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSR--PADGYVSGLEKTL 58 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 +SVFPI F+G A L+FV YE + PK+D D+C R +TYA P+++TLRLIVF+VD T Sbjct: 59 RSVFPIRDFAGTAELDFVQYELEDPKYDTDECRQRGMTYAAPMRVTLRLIVFEVDPDTET 118 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 +S+ DIKEQ +YMGD+PLMT++GTF+I G +R++VSQ+HRSPG+ FDHD+G+ SGK L Sbjct: 119 RSVLDIKEQDVYMGDMPLMTENGTFLINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYL 178 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS 239 +A R+IP +G W+D EFD+KDI++VRIDR+RK+PVTS L ALG + ++ K + Sbjct: 179 FAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLRALG---DAVIEVNPDKGKFE 235 Query: 240 QRG-------------DFWCFPLSAADLMVGAKVSSSLVDIDTGEQV---------IESG 277 L + GA + L+ GE++ SG Sbjct: 236 AGDIVAISGVNRACRVKAVAGRLVTVEDPTGAIIPGGLIQTAEGEKIGHVARIRLQGMSG 295 Query: 278 KKLTSGLLKSLK----EKGVKFLGITSDCLCGLYVAEDIVNGETGEIYI----------- 322 + + + ++ + E G K + + G A D+VN +TGE+ Sbjct: 296 EDILNYFYRTQRFVRGENGWKVPFVAENW-RGQKPAFDVVNADTGEVVFPAGTKISPRAA 354 Query: 323 -------------------------------------EAGDVIDEKSLEEIFHSEIRDIP 345 EAGD + ++LE + + + Sbjct: 355 NKAGKDGLETLLIPTDQIFGRYSAYDLIDESTGRIYIEAGDEVTPENLEALDKAGFDHVD 414 Query: 346 ILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDK 405 +L +D V+ +IRNTL DK +DR AL +IYRVMRPG+ T AE++F LFFDS++ Sbjct: 415 LLDIDHVSTGPWIRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDSER 474 Query: 406 YDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVR 465 YDLS VGRVK+NMRL LD D V +R EDI+A++K LVDL++GKG IDDIDNLGNRRVR Sbjct: 475 YDLSAVGRVKLNMRLELDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVR 534 Query: 466 SVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQL 525 SVGE+L+NQYR+GLLRMER++KER+SSVD+ + MP DLINAKP V+AV EFF SSQLSQ Sbjct: 535 SVGELLENQYRVGLLRMERAVKERMSSVDVSTAMPNDLINAKPAVAAVREFFGSSQLSQF 594 Query: 526 EEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSS 585 + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++S Sbjct: 595 MDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINS 654 Query: 586 LTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELV 645 L SF+RVN YGFIETPYRK+ DGKVTN+VVYLSAMEE IAQAN+ LD +G F E+L+ Sbjct: 655 LASFSRVNKYGFIETPYRKIVDGKVTNEVVYLSAMEEAKHTIAQANAELDSEGRFVEDLI 714 Query: 646 FCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 R AGE ++ PR+ + +D SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVPL++ Sbjct: 715 SAREAGEFLMAPRDHVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVR 774 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 AEAPFVGTGME VA+ SGAAI AKR+GIV+QVDA RIV+R+ G +D SGVDIY LM Sbjct: 775 AEAPFVGTGMEETVARDSGAAIAAKRSGIVDQVDATRIVVRAT-GAVDAGKSGVDIYTLM 833 Query: 766 KFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 KFQRSNQ+TC+NQRPLVKVGD V DIIADGPST+ G+LALGRN+LVAFMPW+GYN+ED Sbjct: 834 KFQRSNQSTCINQRPLVKVGDVVNAGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYED 893 Query: 826 SMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVG 885 S+LISER+V +DVFTSIHI+EFEVMARDTKLGPE+ITRDIPNV EE L+N+DE GI+ +G Sbjct: 894 SILISERIVKDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIG 953 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 AEV PGDIL GKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLR+P GVSGTVVDVR+F Sbjct: 954 AEVEPGDILCGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVF 1013 Query: 946 NRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKS 1005 NRHGIDK+ER++++ERE+I+ L +D++DE+ IL+R Y+RL E+L GQ A + PKG KK Sbjct: 1014 NRHGIDKDERAMAIEREEIDRLTKDREDERAILNRANYARLKEMLLGQIATAAPKGIKKG 1073 Query: 1006 TVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD 1065 + ++ +L++E + +WW+FAVQD+ Q ++E++K QY+ + ++ +F++++EK+Q GD+ Sbjct: 1074 SEINEELLAEVEKREWWKFAVQDDARQADLEAVKAQYDDAVGLIVKKFEDRVEKLQRGDE 1133 Query: 1066 MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPL 1125 +PPGVL++VKVFVA+KR +Q GDKMAGRHGNKG++SRILP EDMPFL+DGTPVDIVLNPL Sbjct: 1134 LPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPL 1193 Query: 1126 GVPSRMNVGQIFETHLGWACVGLGKKIKSLIN-------DYKANGDISPLRSFLEKVIGT 1178 GVPSRMNVGQIFETHLGWA GLGK++ S + D +A + + L++V G Sbjct: 1194 GVPSRMNVGQIFETHLGWAARGLGKQVTSALEAWREANPDAQAATPPAAVVDRLKEVYG- 1252 Query: 1179 GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYD 1238 + I D ++ +A K+GVP++TPVFDGA E + MLR A LDESGQ L+D Sbjct: 1253 KEYHADIEGRSTDQIVEMAGLLKNGVPMATPVFDGAREADVAEMLRRAGLDESGQVELFD 1312 Query: 1239 GLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEME 1298 G TG+ FDR VTVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEME Sbjct: 1313 GRTGDQFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1372 Query: 1299 VWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALG 1358 VW +QAYGAAY LQEMLT+KSDDVVGRT+VYE+IV G+DTFE G PESFNVLVKEM++LG Sbjct: 1373 VWALQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLG 1432 Query: 1359 LSIDLENSRTKNSA 1372 L+++L + ++ Sbjct: 1433 LNVELSSIEDQSDD 1446 >gi|148653833|ref|YP_001280926.1| DNA-directed RNA polymerase subunit beta [Psychrobacter sp. PRwf-1] gi|172048569|sp|A5WH35|RPOB_PSYWF RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|148572917|gb|ABQ94976.1| DNA-directed RNA polymerase, beta subunit [Psychrobacter sp. PRwf-1] Length = 1372 Score = 1608 bits (4163), Expect = 0.0, Method: Composition-based stats. Identities = 718/1380 (52%), Positives = 968/1380 (70%), Gaps = 23/1380 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F + P ++DIP L+ +Q SY+ FL N P R N GLQAAF S+ Sbjct: 1 MAYSYTEKKRIRKSFAELPHVMDIPYLLAIQVDSYEQFLQENKKPKARENTGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS- 121 FPI + S A L+FV Y P+FD +C+ R T+A PL++ +RL++ D D Sbjct: 61 FPIESNSNNAELQFVEYYLGAPEFDERECISRGSTFAAPLRVKIRLVIKDKDSKDKNSKA 120 Query: 122 -IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 IKDI+EQ++YMG++PLMT +GTF+I G +R++VSQLHRSPG+ FDHDKG++ SGK+LY Sbjct: 121 AIKDIREQNVYMGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 RIIP +G W+D EFD+KD++ RIDRRRK+ T L ALGMD+ EIL TF+ K+ + Sbjct: 181 NARIIPYRGSWLDFEFDAKDLVFARIDRRRKLLGTIILRALGMDTNEILDTFFEKVSVYK 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + L A D + G +V D GE ++E GK++ + ++ +++ G+K L + Sbjct: 241 GEEQFEIDLVA-DRLRGEMAQFDIVSPD-GEVLVEQGKRINARRIRQIEQSGMKKLAVPD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSE----IRDIPILYVDSVNNNA 356 + L +AEDIV E+ +A +ID + L ++ E I++ IL+ + +++ Sbjct: 299 EYLYERILAEDIV--VNDEVIAKANTLIDHELLVKLSAFEASESIKEFKILFTNDIDHGT 356 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 YI +TL D R++AL++IY+VMRPG+ T AE +F +FF++D+YDLS VGR+K Sbjct: 357 YIADTLRADSTGSREEALIEIYKVMRPGEPPTIDTAEKLFESMFFNADRYDLSNVGRMKF 416 Query: 417 NMRLNL--------DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 N RL D + + K+DII ++K L+++RNG G +DDID+LGNRR+RSVG Sbjct: 417 NRRLGRTFENTDDPDIKREQSVLTKDDIIDVLKELINIRNGIGEVDDIDHLGNRRIRSVG 476 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 EM +NQ+R+GL+R+ER++KER+SS + D++ PQDLIN+KPV +AV EFF SSQLSQ + Sbjct: 477 EMAENQFRVGLVRVERAVKERLSSAESDNLSPQDLINSKPVAAAVKEFFGSSQLSQFMDQ 536 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 N LS ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL + Sbjct: 537 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHNTHYGRVCPIETPEGPNIGLINSLAT 596 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 FA+ N +GF+ETPYRKV DGKVT+D+ YLSA+EE IAQA+S LDE+G EE+V R Sbjct: 597 FAKTNEFGFLETPYRKVVDGKVTDDIEYLSAIEEVGTVIAQADSELDENGVLAEEMVMVR 656 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE + +P +K+ +D SP QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ Sbjct: 657 SGGESVRMPSDKVTHMDVSPSQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADK 716 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME VA+ SG ++A+R G++E VDA RIV+R E ++ +G+DIY L+K+ Sbjct: 717 PLVGTGMERHVARDSGVCVIARRGGVIEDVDASRIVVRVNEDEMQAGEAGIDIYNLIKYT 776 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQNTC+NQR +V GDE+ DI+ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L Sbjct: 777 RSNQNTCINQRIIVNQGDEIAGGDILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 836 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V ED FT+IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV Sbjct: 837 LSERVVKEDRFTTIHIQELTCVARDTKLGTEEITADIPNVGEAALSALDESGIVYIGAEV 896 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 + GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ GTV+DV++F R Sbjct: 897 DAGDILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDTSLRVPTSTKGTVIDVQVFTRD 956 Query: 949 GIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL 1008 G++K+ R+ S+E+ Q++ +D +E I + SR+ +L GQ G G K TVL Sbjct: 957 GVEKDARAKSIEKSQLDNYRKDLKEELRIFEEAARSRISHLLDGQAISGG-AGLKSGTVL 1015 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPP 1068 + + E +E++ + ++ + ++ +F K K+ GDD+ Sbjct: 1016 AESELLEMSLETLLDIQPVEEEIAERLTQIQEFLVDKQKDIDTKFAEKKRKLTAGDDLAH 1075 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV ++VKV++A+KR IQ GDKMAGRHGNKG+VSRI+P EDMP+ ++G PVDIVLNPLGVP Sbjct: 1076 GVQKIVKVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPVEDMPYDENGNPVDIVLNPLGVP 1135 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISD 1187 SRMN+GQ+ ETHLG A GLG KI +I KA ++ LR FL+K+ G + Sbjct: 1136 SRMNIGQVLETHLGMAAKGLGDKINGMI---KAQAAVTELREFLDKIYNKVGGEQVDLDS 1192 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 DD + +A+ + GVP+ T VFDGA E I+ +L +A SGQ LYDG TG+ FDR Sbjct: 1193 LSDDDIRALAQNLRDGVPMGTAVFDGAREVQIDELLELAGYPSSGQQTLYDGRTGQKFDR 1252 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 PVTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1253 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1312 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 Y LQEMLT+KSDDV GRTR+Y++IV G + G PESFNVL KE+++LG++I+L+ S Sbjct: 1313 TYTLQEMLTVKSDDVEGRTRMYKNIVDGEQYMDPGMPESFNVLTKEIKSLGINIELKESN 1372 >gi|41018148|sp|Q9KW14|RPOB_SHEVI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|9049401|dbj|BAA99392.1| RNA polymerase beta subunit [Shewanella violacea] Length = 1343 Score = 1607 bits (4160), Expect = 0.0, Method: Composition-based stats. Identities = 695/1364 (50%), Positives = 954/1364 (69%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D G +AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPKVLDIPYLLSIQLDSFKKF----TDQDPTGERGFEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TYA PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGITYAAPLRVKLRMVLYDREAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTNNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L AL +++IL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPASIMLRALDYSTQDILDLFFDRVNFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + D D G ++E G+++T+ ++ L++ L + D Sbjct: 235 DSLVMDLVPERL-RGETASYDIKDSD-GSILVEKGRRVTARHIRQLEKSKTTELEVPVDY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +D ++ +TGE+ + A I + L ++ + I++I LY++ ++N AY+ +TL Sbjct: 293 IEGKIAGQDYIDPDTGEVLVSANAEITLEDLAKLSMAGIKEISTLYINDLDNGAYMSDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE +F LFF ++YDLS VGR+K N RL++ Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEGLFQNLFFSEERYDLSKVGRMKFNRRLSI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 GEDEGSGILSKEDIVAVMKNIITIRNGGDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+ + YLSA+EE IAQAN +D++G EE V CR G+ + I Sbjct: 593 RKVEDGVVTDQIDYLSAIEEGRYVIAQANIDIDKNGRLLEEQVACRHKGDSTFMRGTDIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E ++A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERIIAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G ++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVVAKRGGSIDYVDASRIVVKVNESELRPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD V D++ADGPSTDLGDLA G+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGDPVVVGDVLADGPSTDLGDLAFGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ +Y R +L + PRS Sbjct: 953 HIAQAKKDLTEEFKILEEGVYGRARNLLLNAG-------------FEQAQLDAIPRSHLL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 VQTIDDEAKQTELEQLAEQHDELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G P+DIVLNPLGVPSRMN+GQI E H+G Sbjct: 1060 TIQPGDKMAGRHGNKGVISKINPVEDMPYDENGNPIDIVLNPLGVPSRMNIGQILEVHMG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G +I +++ + + +I + ++ I + DD VLR+A+ K Sbjct: 1120 AAAKGIGDQITAMLEEQRQLAEIRGYIKEVYELGDEVLQRVDIDSFTDDEVLRLAKNLKG 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E+ I ML +A L SGQ LYDG TG F+R VTVGY+YMLKLNH+ Sbjct: 1180 GIPIATPAFDGAKEKEIKEMLALAKLPTSGQRTLYDGRTGNEFERKVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1300 NGRTQMYKNIVDGNYQMQPGMPESFNVLLKEIRSLGINIELDQD 1343 >gi|294142940|ref|YP_003558918.1| DNA-directed RNA polymerase subunit beta [Shewanella violacea DSS12] gi|293329409|dbj|BAJ04140.1| DNA-directed RNA polymerase, beta subunit [Shewanella violacea DSS12] Length = 1343 Score = 1607 bits (4160), Expect = 0.0, Method: Composition-based stats. Identities = 696/1364 (51%), Positives = 955/1364 (70%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ +Q S+ F D G +AAF+SV Sbjct: 1 MVYSYSEKKRIRKDFGKRPKVLDIPYLLSIQLDSFKKF----TDQDPTGERGFEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +FSG + L++VSY+ P FDV +C R +TYA PL++ LR++++D + G ++ Sbjct: 57 FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGITYAAPLRVKLRMVLYDREAAPG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMGD+PLMT +GTFVI G +R++VSQLHRSPG+ FDHD+G+ SGK+LY Sbjct: 115 KDIKEQEVYMGDIPLMTNNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P + L AL +++IL F+ ++ + + Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPASIMLRALDYSTQDILDLFFDRVNFKIKK 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G S + D D G ++E G+++T+ ++ L++ L + D Sbjct: 235 DSLVMDLVPERL-RGETASYDIKDSD-GSILVEKGRRVTARHIRQLEKSKTTELEVPVDY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G +D ++ +TGE+ + A I + L ++ + I++I LY++ ++N AY+ +TL Sbjct: 293 IEGKIAGQDYIDPDTGEVLVSANAEITLEDLAKLSMAGIKEISTLYINDLDNGAYMSDTL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE +F LFF ++YDLS VGR+K N RL++ Sbjct: 353 RIDSTTNRLEALVEIYRMMRPGEPPTKDAAEGLFQNLFFSEERYDLSKVGRMKFNRRLSI 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+A++K ++ +RNG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 GEDEGSGILSKEDIVAVMKNIITIRNGGDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D++ +MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 473 ERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL SFAR N+YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRLCPTETPEGPNIGLINSLASFARTNSYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+ + YLSA+EE IAQAN +D++G EE V CR G+ + I Sbjct: 593 RKVEDGVVTDQIDYLSAIEEGRYVIAQANIDIDKNGRLLEEQVACRHKGDSTFMRGTDIQ 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E ++A Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERIIAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G ++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP Sbjct: 713 SGVVVVAKRGGSIDYVDASRIVVKVNESELRPGEAGIDIYNLTKYTRSNQNTCINQRPCC 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD V D++ADGPSTDLGDLALG+NM +AFMPW+GYNFEDS+LISER+ ED FT+I Sbjct: 773 SVGDPVVVGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 833 HIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GT++DV++F R G++K++R++ +E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEM 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 I +D +E IL+ +Y R +L + PRS Sbjct: 953 HIAQAKKDLTEEFKILEEGVYGRARNLLLNAG-------------FEQAQLDAIPRSHLL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + DE Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 1000 VQTIDDEAKQTELEQLAEQHDELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G P+DIVLNPLGVPSRMN+GQI E H+G Sbjct: 1060 TIQPGDKMAGRHGNKGVISKINPVEDMPYDENGNPIDIVLNPLGVPSRMNIGQILEVHMG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G +I +++ + + +I + ++ I + DD VLR+A+ K Sbjct: 1120 AAAKGIGDQITAMLEEQRQLAEIRGYIKEVYELGDEVLQRVDIDSFTDDEVLRLAKNLKG 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E+ I ML +A L SGQ LYDG TG F+R VTVGY+YMLKLNH+ Sbjct: 1180 GIPIATPAFDGAKEKEIKEMLALAKLPTSGQRTLYDGRTGNEFERKVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN + G PESFNVL+KE+++LG++I+L+ Sbjct: 1300 NGRTQMYKNIVDGNYQMQPGMPESFNVLLKEIRSLGINIELDQD 1343 >gi|149911142|ref|ZP_01899768.1| DNA-directed RNA polymerase beta subunit [Moritella sp. PE36] gi|149805819|gb|EDM65809.1| DNA-directed RNA polymerase beta subunit [Moritella sp. PE36] Length = 1345 Score = 1606 bits (4159), Expect = 0.0, Method: Composition-based stats. Identities = 698/1368 (51%), Positives = 960/1368 (70%), Gaps = 23/1368 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 R+RK FGK+ ++ P ++ +Q +S+ FL M+ GL+AAF+SV Sbjct: 1 MVYSNTEKKRIRKDFGKSAPVVAKPQMLAIQTSSFKKFLEMD----HTGEHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY F+V +C R +TY+ PL++ LRL+++D D G +I Sbjct: 57 FPIKSYSGTSELQYVSYRLGESVFEVKECQTRGITYSAPLRVKLRLVLYDRDAPAG--TI 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT GTFVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTHTGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + VRIDRRRK+P + L AL +EEIL+ F+ + + Sbjct: 175 RVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPSSIILRALEFTTEEILAIFFDTTRFEVKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G +V GE +E+G+++T+ +K ++ G+ + + + Sbjct: 235 GKILMELLPERL-RGETAVFDIV--ANGEVYVENGRRITARHIKKFEKAGITEIEVPLEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G ++D +N ETGE+ + A + +S+ E+ + I+ I +LY + ++ +Y+ +TL Sbjct: 292 LAGKVASKDYINEETGEVIVAANAELTLESVAELSQAGIKVIDVLYTNDLDVGSYMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IYR+MRPG+ T AE +FN LFF ++YDLSTVGR+K N R+ Sbjct: 352 RVDSTTNKLEALVEIYRMMRPGEPPTREAAEGLFNNLFFAEERYDLSTVGRMKFNRRIGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDI+ ++K L+++RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EEDTGSGILNKEDIVEVMKTLINIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D+VMPQDLINAKP+ +A+ EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDAVMPQDLINAKPISAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL FAR N YGF+ETP+ Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLAVFARTNDYGFLETPF 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +GKVTNDV YLSA+EE +AQAN+++D +G +E + CR GE + + I Sbjct: 592 RKVINGKVTNDVQYLSAIEEGLYAVAQANATIDTNGMLQDEFIPCRHKGETTFMSADNIQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+Q++S+AASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTG+E VA Sbjct: 652 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLNADKPLVGTGIERAVAID 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VA R G ++ DA RI+++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTVVALRGGSIDYADASRIIVKVNEEELVPGEAGIDIYTLTKYTRSNQNTCINQRPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V + D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED T+I Sbjct: 772 LTGEAVVKGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVKEDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ VGAEV PGDILVGK+TPKG Sbjct: 832 HIQELSSIARDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEVKPGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V GTV+DV++F R G+DK++R+ +E+ Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVYGTVIDVQVFTRDGVDKDKRAQDIEQM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D +E I + +++ R+ +L + + ++ R QW Sbjct: 952 QLREAKKDLTEELSIFEESLFGRVKNLLLAAG-------------KTEEQLTAISRGQWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + DE+ Q +ESL Q++ ++ + +F K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 EMVLVDEEQQTQLESLAKQHDELRADFDSKFDIKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP K G PVDIVLNPLGVPSRMN+GQ+ E HLG Sbjct: 1059 RIQPGDKMAGRHGNKGVISTIVPIEDMPHDKFGEPVDIVLNPLGVPSRMNIGQVLEVHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI ++I + + I + G +S Y D+ V +A + Sbjct: 1119 LAARGIGTKIDNMIKEQQDLAKIREFMQKAYDI-GDSHQKVDLSTYSDEEVRVLAHNLRK 1177 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TP FDGA E I MLR+ADL ESGQ LYDG TG+ F+RPVTVGY+YMLKLNH+ Sbjct: 1178 GLPMATPAFDGAAEAEIKEMLRLADLPESGQLELYDGRTGDLFERPVTVGYMYMLKLNHL 1237 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1238 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1297 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 GRT++Y+SIV G+ + G PESFNVL+KE+++LG++I+L+ ++ K Sbjct: 1298 NGRTKMYKSIVDGDHRMDPGMPESFNVLLKEIRSLGINIELDENKGKK 1345 >gi|322506510|gb|ADX01964.1| rpoB [Acinetobacter baumannii 1656-2] gi|323516389|gb|ADX90770.1| DNA-directed RNA polymerase subunit beta [Acinetobacter baumannii TCDC-AB0715] Length = 1341 Score = 1605 bits (4156), Expect = 0.0, Method: Composition-based stats. Identities = 709/1353 (52%), Positives = 971/1353 (71%), Gaps = 21/1353 (1%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 +D P L+ +Q SY FL +P R + GLQAAF+SVFPI ++SG A LEFV Y Sbjct: 1 MDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSVFPIESYSGNAALEFVEYSLGK 60 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 P+FDV +C+ R TYA P+++ +RLI+ D + KSIKD++EQ +YMG++PLMT++GT Sbjct: 61 PEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSIKDVREQEVYMGEIPLMTENGT 116 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 FVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ RIIP +G W+D EFD+KD+++ Sbjct: 117 FVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIPYRGSWLDFEFDAKDLVY 176 Query: 204 VRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 VRIDRRRK+ T L ALG ++E+IL+ FY K+ + L L G Sbjct: 177 VRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDMGSYQIDLVPERL-RGEMAQFD 235 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 + D + G+ ++E GK++ + ++ ++ G+ L + + L AEDI + GE+ Sbjct: 236 ITDNE-GKVIVEQGKRINARHVRQMEAAGLTKLSVPDEYLYERITAEDITLRD-GEVIA- 292 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 A ++ + + ++ ++ IL+ + ++ +++ +TL D +DR++AL++IY+VMRP Sbjct: 293 ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTLRADLTRDREEALVEIYKVMRP 352 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP--------DDVRHIRKED 435 G+ T AE++FN LFF S++YDLS VGR+K N RL + + ED Sbjct: 353 GEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQKSREVEGILSHED 412 Query: 436 IIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDI 495 II +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ER++KER+S + Sbjct: 413 IIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRVERAVKERLSQAET 472 Query: 496 DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAG 555 D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS ITH RR+SALG GG+ R RAG Sbjct: 473 DNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAG 532 Query: 556 VEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVV 615 E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N +GF+ETPYRKV DG+VT+DV Sbjct: 533 FEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPYRKVVDGRVTDDVE 592 Query: 616 YLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIA 675 YLSA+EE IAQA+S++D+DG+ TEE V R GE + +P EK+ +D S +QVVS+A Sbjct: 593 YLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFVRMPPEKVTHMDVSAQQVVSVA 652 Query: 676 ASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIV 735 ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME+ VA+ SG ++A R G++ Sbjct: 653 ASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMEANVARDSGVCVIANRGGVI 712 Query: 736 EQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIA 795 E VDA RIVIR E ++ +GVDIY L+K+ RSNQNTC+NQ +V +GD+V R DI+A Sbjct: 713 EYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNTCINQNVIVNLGDKVARGDILA 772 Query: 796 DGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTK 855 DGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ ED TSIHI+E +ARDTK Sbjct: 773 DGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSIHIQELSCVARDTK 832 Query: 856 LGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRA 915 LG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRA Sbjct: 833 LGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKGETQLTPEEKLLRA 892 Query: 916 IFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQ 975 IFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++R++++E+ Q++ +D +E Sbjct: 893 IFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKAQLDSYRKDLKEEY 952 Query: 976 VILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNV 1035 I + R++ +L GQ + G K+ LS DL+S + DE + + Sbjct: 953 KIFEEAARERVIRLLKGQESNGG-GSTKRGDKLSEDLLSGLELVDLLEIQPADEAIAERL 1011 Query: 1036 ESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHG 1095 ++V + + ++++F K K+ GD++ GVL+VVKV++A+KR IQ GDKMAGRHG Sbjct: 1012 TQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRRIQPGDKMAGRHG 1071 Query: 1096 NKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSL 1155 NKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVGQI ETHLG A GLG KI+ + Sbjct: 1072 NKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVGQILETHLGMAAKGLGDKIEKM 1131 Query: 1156 INDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGA 1214 + + + + LR FL+K+ G E + D+ +L +A ++GVP++TPVFDGA Sbjct: 1132 LKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDEEILALAGNLRAGVPLATPVFDGA 1188 Query: 1215 DEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGS 1274 +E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY+YMLKLNH+V DK++ARSTGS Sbjct: 1189 EESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGYMYMLKLNHLVDDKMHARSTGS 1248 Query: 1275 YSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVA 1334 YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRTR+Y++IV Sbjct: 1249 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTRIYKNIVD 1308 Query: 1335 GNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 GN + G PESFNVL KE+++LG++I+L+N Sbjct: 1309 GNHYMDPGMPESFNVLTKEIRSLGINIELKNGD 1341 >gi|238020179|ref|ZP_04600605.1| hypothetical protein GCWU000324_00054 [Kingella oralis ATCC 51147] gi|237868573|gb|EEP69577.1| hypothetical protein GCWU000324_00054 [Kingella oralis ATCC 51147] Length = 1398 Score = 1605 bits (4155), Expect = 0.0, Method: Composition-based stats. Identities = 695/1403 (49%), Positives = 957/1403 (68%), Gaps = 44/1403 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + AP +R +EGLQAAF S+ Sbjct: 1 MSYTFTEKKRIRKSFAKRETVLDVPYLLTTQLESYSKFLQQDCAPQKRKDEGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVD--EFTGAK 120 FPI + +G A L+F Y P+FD+ +C R +TYA PL+ ++L +F+ + + Sbjct: 61 FPIVSNNGYAELQFDQYVLGEPEFDIAECQLRGITYAAPLRAKIKLAIFNKEGSNKVEER 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +K+I+ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL+ Sbjct: 121 ELKEIRANDVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHASGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL+ F+ Y Sbjct: 181 SARIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLRALGYNNEQILAMFFDLETYYL 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 G L L G + D + G ++ +GK++ + ++ ++ G+ L I + Sbjct: 241 SGTGVQTALVPERL-RGETAKFDIADNE-GNVLVAAGKRINARNIRDIQAAGLTRLNIDA 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G +A D++ +TGE+ A I E+ L + I++I L+V AYI Sbjct: 299 ESLIGKIIARDVIVPDTGEVLATANAEITEELLAQFDIQGIKEIQTLFVSETEAGAYISA 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL TD+ D++ A + IYR+MRPG+ T E++FN LFF + YDLS VGR+K N R Sbjct: 359 TLNTDETADQQAAKIAIYRMMRPGEPPTEEAVEALFNRLFFQEESYDLSRVGRMKFNTRT 418 Query: 421 NL------------------------DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 + + + EDI+ I LV+LRNG G +DDI Sbjct: 419 YEQKLLPVQENNWYGRLLNQTFAGVGEKEAKLHILSVEDIVVTIATLVELRNGHGEVDDI 478 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEF 516 D+LGNRRVRSVGE+++NQ+R GL R+ER++KER++ + + +MP DLINAKPV +A+ EF Sbjct: 479 DHLGNRRVRSVGELVENQFRSGLARVERAVKERLNQAESEGLMPTDLINAKPVSAAIKEF 538 Query: 517 FCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSE 576 F SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET E Sbjct: 539 FGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 598 Query: 577 GHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDE 636 G NIGL++SL+ +AR N YGF+ETPYR+V DGKVTN++ YLSA+EE IAQAN+ LD+ Sbjct: 599 GPNIGLINSLSVYARTNEYGFLETPYRRVVDGKVTNEIDYLSAIEEGRYVIAQANTDLDK 658 Query: 637 DGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNM 696 G +L+ CR GE IL +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NM Sbjct: 659 HGKLLGDLITCREKGETILATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANM 718 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPST 756 QRQAVP L+AE P VGTG+E VA S AIVA+R G+VE VDA R+V+R + + Sbjct: 719 QRQAVPCLRAEKPLVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEATAKE 778 Query: 757 SGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 GVDIY L+KF RSNQ+T +NQRP V GD ++R D+IADG STDLG+LALG+NM +AFM Sbjct: 779 GGVDIYNLVKFTRSNQSTNINQRPAVSAGDVLQRGDLIADGASTDLGELALGQNMTIAFM 838 Query: 817 PWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNI 876 PW+GYN+EDS+LISER+ ++D +TSIHIEE V+ARDTKLG EEITRDIPN+SE+ + Sbjct: 839 PWNGYNYEDSILISERVAADDRYTSIHIEELNVVARDTKLGAEEITRDIPNLSEKMQNRL 898 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 DE GII +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+S Sbjct: 899 DESGIIYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMS 958 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 GTV+DV++F R GI +++R+ ++ +++ +D +D+ I D + + R+ ++ GQ A Sbjct: 959 GTVIDVQVFTREGIQRDKRAQAIIDAELKRYRQDLNDQIRIFDNDTFDRIQRMIVGQKAN 1018 Query: 997 SGPKGFKKSTVLSSDLISEY-PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 GP K V++ + + R W+ V DE++ + +E +K+ + +S E F+ Sbjct: 1019 GGPNKLGKGKVITQEYLDGLTSRHDWFDIRVADEEIAKQLELMKLSLQEKRSEAEALFEV 1078 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 K +K+ GD++P GV + VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG Sbjct: 1079 KKKKMTQGDELPAGVQKTVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADG 1138 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 VDIVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ +++ + +R+FL K+ Sbjct: 1139 RTVDIVLNPLGVPSRMNIGQILEVHLGWAAKGIGQRIDKMLQEHR---KVKEIRAFLNKL 1195 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA--------- 1226 E + D+ +L +A+ + G ++PVFDGA E+ I ML +A Sbjct: 1196 YNGSGKHEDLDSLSDEDILVLADNLRRGATFASPVFDGAKEKEIYEMLNLAYPSDDPEVQ 1255 Query: 1227 --DLDES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPL 1283 ++S Q LYDG +GEPFDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPL Sbjct: 1256 KLGFNDSKTQITLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPL 1315 Query: 1284 GGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGT 1343 GGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G Sbjct: 1316 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMYENIVKGEHKIDAGM 1375 Query: 1344 PESFNVLVKEMQALGLSIDLENS 1366 PESFNV+VKE+++LGL IDLEN+ Sbjct: 1376 PESFNVIVKEIRSLGLDIDLENN 1398 >gi|153005082|ref|YP_001379407.1| DNA-directed RNA polymerase subunit beta [Anaeromyxobacter sp. Fw109-5] gi|166229284|sp|A7HCH7|RPOB_ANADF RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|152028655|gb|ABS26423.1| DNA-directed RNA polymerase, beta subunit [Anaeromyxobacter sp. Fw109-5] Length = 1416 Score = 1604 bits (4154), Expect = 0.0, Method: Composition-based stats. Identities = 723/1394 (51%), Positives = 1003/1394 (71%), Gaps = 27/1394 (1%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R+ FGK +I +IP+LI +QK+SYD FL ++ P++R + GLQ FKSVFPI F+ Sbjct: 10 RIRRNFGKINKIAEIPNLIAIQKSSYDKFLQADVPPEKREDTGLQGVFKSVFPIKDFNET 69 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 + LEFVSY + PK+DVD+C R +TY+ P+K+ +RL+V+D DE TGA+SI+D+KEQ +Y Sbjct: 70 SSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVY 129 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 G++PLMT++GTF+I G +R+VVSQLHRSPG FDHDKG++ SGKLL+ RIIP +G W Sbjct: 130 FGEIPLMTENGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLFNARIIPYRGSW 189 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALG--------------MDSEEILSTFYPKIV 237 +D EFD KDI++VRIDRRRK+P T L ALG +EEIL +Y Sbjct: 190 IDFEFDHKDILYVRIDRRRKLPATVLLRALGGVPDTAKKTPIEFHGSAEEILKYYYDTET 249 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 G DL+ G + + + D T E V++ +K T +K L +K L Sbjct: 250 IRIEGKGKFEKDLNPDLLKGQRATRDIRDPKTNEIVVKKNRKFTESAIKKLVAAKMKSLP 309 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 I + + AED+V+ +TGE+ +E + + E+ LEE+ I + +L++D++N Sbjct: 310 IEPEEVYTKISAEDVVDEQTGEVLLEVNEEVSEEKLEELRKRGIGEFKVLFIDNLNVLPS 369 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 +R+TL+ DK ++A+++IYR +RPGD T A ++F LFF++++YDLS VGR+K+N Sbjct: 370 LRDTLMQDKISTPEEAIMEIYRRLRPGDPPTPETATNLFVNLFFNAERYDLSKVGRLKLN 429 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQY 475 + ++ P D + K DI+ +++ L+DL+NG +DDID+LGNRRVR+VGE+L+NQY Sbjct: 430 YKFGIEEPLDNTVVTKRDILEVVRFLIDLKNGTPNKDVDDIDHLGNRRVRAVGELLENQY 489 Query: 476 RLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRI 535 R+GL+RMER+IKER+S +I+++MP DLINAKPV + + EFF SSQLSQ + N LS + Sbjct: 490 RIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEV 549 Query: 536 THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 TH RRLSALG GG+ R RAG E+RDVH THYGRICP ET EG NIGL++SL+++ARVN Y Sbjct: 550 THKRRLSALGPGGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASLSTYARVNEY 609 Query: 596 GFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 GF+ETPYRKV G+VT++V + SA+EEE IAQAN+ +D+ G FT +V CR GE I Sbjct: 610 GFVETPYRKVEKGRVTDEVSFYSALEEEKHIIAQANAPVDKKGVFTGNIVSCRKEGEYIN 669 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 +++D +D SP Q+VS+AASL+PFLENDD+NR LMG NMQRQAVPLL+ AP VGTG+ Sbjct: 670 ARPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRTRAPLVGTGI 729 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNT 774 E +VA+ SG +VAKR G+++ VDA RIV+++ + VDIY L+K+QRSNQNT Sbjct: 730 EGIVARDSGVCVVAKRDGVIQSVDAARIVVKADVPTSATDVANEVDIYNLIKYQRSNQNT 789 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQ+P+VK G+ V++ D+IADGP+T++G+LALG+N++VAFMPW GYNFEDS+L+SER + Sbjct: 790 CINQKPIVKPGERVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFEDSILLSERFL 849 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +DVFTS+HIEEFE +ARDTKLG EEITRDIPNV EE LK++DE GII +GAEV PGDIL Sbjct: 850 KDDVFTSVHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEVKPGDIL 909 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGKITPKGE+ ++PEEKLLRAIFGEKA DVRD+SLRVP GVSGTV++ ++F+R G++K+E Sbjct: 910 VGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVFSRKGVEKDE 969 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS------GPKGFKKSTVL 1008 R+ ++E + L +D++DE I+ + + ++ +L G+ G + K+ VL Sbjct: 970 RAKAIEEMEEAKLLKDQNDEIRIIQDSAFQKIRRLLLGKEVSGRLVDDKGNQLLKRGDVL 1029 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPP 1068 L+ P+ W + AV+ + VQ V + +E K +++ F KI +++ GD++PP Sbjct: 1030 DDALLDTVPQRYWGEIAVEGD-VQDLVRKIVENFEEQKELVKLLFGEKIGRLKKGDELPP 1088 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV+++VKV+VA+KR + GDKMAGRHGNKG+VSR+LP ED+P+L+DG PVDIVLNPLGVP Sbjct: 1089 GVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGRPVDIVLNPLGVP 1148 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLIN-DYKANGDISPLRSFLEKVIGTGSHTEKISD 1187 SRMNVGQI ETHLGWA +G +++ +I ++ + L+ E V G+ + I + Sbjct: 1149 SRMNVGQILETHLGWAAKNVGWRLQEMIEKNFGPDQLRKKLKKAFEGVEGSDRLGQLIDE 1208 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 + ++A + K G+ V+TPVFDGA E+ + ++L + QSIL+DG TGEPFD+ Sbjct: 1209 LPAQELPKLATKLKEGMHVATPVFDGAHEDEMKALLGEG--SATMQSILFDGRTGEPFDQ 1266 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 VTVG +YMLKL+H+V +K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA Sbjct: 1267 DVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGA 1326 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 AY LQE LT+KSDDVVGRTR+YE+IV G +T E+G PESFNVL+KE+Q+L L ++L + Sbjct: 1327 AYSLQEFLTVKSDDVVGRTRMYEAIVKGENTLESGLPESFNVLIKELQSLALDVELLETP 1386 Query: 1368 TKNSAKMEEIPDFN 1381 +A+ + + Sbjct: 1387 EAKAAREQAEGELG 1400 >gi|88861460|ref|ZP_01136087.1| DNA-directed RNA polymerase beta chain [Pseudoalteromonas tunicata D2] gi|88816542|gb|EAR26370.1| DNA-directed RNA polymerase beta chain [Pseudoalteromonas tunicata D2] Length = 1341 Score = 1604 bits (4153), Expect = 0.0, Method: Composition-based stats. Identities = 704/1365 (51%), Positives = 964/1365 (70%), Gaps = 27/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 ++ R+RK FGK P+++DIP L+ Q S+ FL +PD N GL+AAF+SV Sbjct: 1 MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLESFKKFL----SPDAEGNHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++ D + ++ Sbjct: 57 FPIKSYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVLMDKEAPG---TV 113 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT GTFVI G +R++VSQLHRSPG+ FD+D+G+ SGK+LY Sbjct: 114 KDIKEQEVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNA 173 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD+KD ++VRIDRRRK+P + L AL +EEIL F+ + Sbjct: 174 RVIPYRGSWLDFEFDAKDNLYVRIDRRRKLPASIILRALDFSNEEILKIFFETTAFEIAN 233 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L + L G + D D GE V+E G+++T+ +K L+++ V L + + Sbjct: 234 GKVMMELVPSRL-RGEVAQFEIKDND-GEVVVEKGRRITARHIKQLEKEQVNSLEVPHEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA + ++ ++GEI EA + + + E+ + I LY++ V++ AY+ +TL Sbjct: 292 IIGRVVARNYISEDSGEIIAEANAELTLELMAELVKAGFNRIDTLYINDVDSGAYMSDTL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+K N R++ Sbjct: 352 RIDSTTNRLEALVEIYRMMRPGEPPTRDAAEALFQNLFFSEERYDLSTVGRMKFNSRVDN 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + KEDI+A++K+L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 PEGTGDGTLSKEDIVAVMKVLIDIRNGKGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVRERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N +GF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSCYARTNEFGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG VT+DV YLSA+EE IAQAN++L+E+ F E+L+ CR GE + + + Sbjct: 592 RKVVDGVVTDDVDYLSAIEEGRFVIAQANANLNENNEFLEDLIPCRFKGESTFMGKTDMQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SP+QV+S+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E +AK Sbjct: 652 YMDVSPQQVISVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIEMTLAKD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG IVAKR G V DA RIV+ E + +G+DIY L K+ RSNQNTC+NQ+P V Sbjct: 712 SGVTIVAKRGGQVTYADASRIVVNVNENERIAGEAGIDIYNLTKYTRSNQNTCINQKPTV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VG+ V R D++ADGPSTDLGDLALG+N+ VAFMPW+GYNFEDS+L+SER+V ED T+I Sbjct: 772 MVGEPVTRGDVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVQEDRLTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E + +ARDTKLG EEIT DIPNV E L +DE G++ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELQCIARDTKLGSEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ V+GTV+DV++F R G++K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEIEDM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q+ +D ++E IL+ + +R ++L G + + + Sbjct: 952 QLREAKKDFNEEFRILEAGVVARARQLLVGAG-------------FDEEKLLGLSSEKVL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ DE+ Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 TQSLADEEKQAELEQLAAQYDELKAEYDKKFEVKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S I+P EDMP+ G VDIVLNPLGVPSRMN+GQI ETH+G Sbjct: 1059 RIQPGDKMAGRHGNKGVISTIVPVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQW 1200 A G+G++I+ +I K + LR F++K G IS + DD V R+A Sbjct: 1119 LAARGIGERIEEMI---KEQRALHELREFIQKAYSLGDCRQKVDISTFTDDEVRRLAHHL 1175 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+P++TP FDGA E I ML + SGQ LYDG TG+ F+R VTVGY+YMLKLN Sbjct: 1176 RGGLPIATPAFDGAKESEIKEMLELGGYPTSGQVTLYDGRTGDKFERQVTVGYMYMLKLN 1235 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSD Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE Sbjct: 1296 DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEE 1340 >gi|78484633|ref|YP_390558.1| DNA-directed RNA polymerase, beta subunit [Thiomicrospira crunogena XCL-2] gi|109914407|sp|Q31IY9|RPOB_THICR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|78362919|gb|ABB40884.1| DNA-directed RNA polymerase, beta subunit [Thiomicrospira crunogena XCL-2] Length = 1352 Score = 1603 bits (4152), Expect = 0.0, Method: Composition-based stats. Identities = 702/1365 (51%), Positives = 966/1365 (70%), Gaps = 14/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 R+RK F I+++P L+ +QK S+ FL + P ER GL +AF SV Sbjct: 1 MTYSLTEKKRIRKDFATRSSILEVPYLLSLQKESFKEFLQKDKKPLERDPIGLHSAFSSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +G A LE+VSY P+FDV +C R +TY+ PL++ +RL++FD D G + + Sbjct: 61 FPIHGVAGTADLEYVSYTMGQPEFDVKECKQRGVTYSSPLRVKMRLVLFDKDAPAGKRPV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KD+KEQ +Y+GD+PLMT++GTFVI G +R++V+QLHRSPG+ FD DKG++ SGK+L+ Sbjct: 121 KDVKEQEVYLGDVPLMTENGTFVINGTERVIVTQLHRSPGVIFDSDKGKSHSSGKVLFNA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD D + VRIDRRRK+PV+ A+G SEEIL TF+ S + Sbjct: 181 RIIPYRGSWLDFEFDHNDCVFVRIDRRRKLPVSIIFRAMGYSSEEILDTFFDHTHISYKK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L + + G + + D D + +I++GKK+T+ +K L+E V + + + Sbjct: 241 GAFVMQLVPS-QLKGQTAAFDIADGD--KVIIKAGKKITARNIKQLQEAKVDSVVVPEEY 297 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G ++ I N ETGE+ + +VI +E + + IL++D + N +YI +TL Sbjct: 298 LLGKVLSSGITNEETGELVARSNEVIASDLIETMKSIKDLSFRILFIDDLENGSYISDTL 357 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + +A ++IYR+MRPG+ T +E++FN LFFD +YDLS+VGR+K+N RL Sbjct: 358 NLDTTTSQLEAQIEIYRMMRPGEPPTKESSEALFNSLFFDEARYDLSSVGRMKLNRRLGR 417 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +D++ ++K L+++RNG TIDDID LGNRR+R+VGEM +N +R+GL+R+ Sbjct: 418 KDNEGSLVLENQDVVDVVKELLNIRNGLSTIDDIDTLGNRRIRAVGEMAENAFRVGLVRV 477 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER++ + D ++PQDLINAKPV +A+ EFF SSQLSQ + VN LS +TH RR+S Sbjct: 478 ERAVKERLNQAETDGLLPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSEVTHKRRVS 537 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL+++L +A+ N YGF+ETPY Sbjct: 538 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINTLAIYAKTNKYGFLETPY 597 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV DG+VT +V Y+SA++E IAQA++++D D +ELV R E IL + ID Sbjct: 598 RKVIDGQVTEEVEYVSAIDEAQFVIAQASAAMDSDNKLLDELVTARHKNETILASSQDID 657 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 658 YMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIEKTVAID 717 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG ++A R G + D+ RIV+R+ + ++ +GVDIY L+K+QRSNQNTC+NQ+P+V Sbjct: 718 SGVTVIALRGGEIVSSDSARIVVRANQEEIAEGETGVDIYNLIKYQRSNQNTCINQKPIV 777 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V R D++ADGPSTDLG+LA+G+NM +AFMPW+GYNFEDS+L+SER+V ED +T+I Sbjct: 778 KAGDVVSRGDVLADGPSTDLGELAIGQNMRIAFMPWNGYNFEDSILVSERVVQEDRYTTI 837 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE +ARDTKLGPEE+T DIPNV E L +DE GI+ VGAEV GDILVGK+TPKG Sbjct: 838 HIEELTCLARDTKLGPEEVTSDIPNVGEAALSRLDESGIVYVGAEVKQGDILVGKVTPKG 897 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+DTSLRV GV GTV+DV++F R G+ K+ R+++++ + Sbjct: 898 ETQLTPEEKLLRAIFGEKASDVKDTSLRVSKGVEGTVIDVQVFTREGVKKDARALAIQED 957 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ + +D D++ IL+ + R+ +L GQ V T +++D ++ S+W+ Sbjct: 958 ELQKVRKDIDEQYKILEEDTIDRIQPMLIGQKLVD-------GTEITADFLASQDSSKWF 1010 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 V D+ + ++ESL+ Q K L F+ K +K+ GDD+ PGV ++VKV+VA+KR Sbjct: 1011 GLNVADDALSSHLESLEKQLVAKKEELNGVFEEKKKKLTQGDDLQPGVSKMVKVYVAVKR 1070 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++SRI P EDMP+ + G PVDI LNPLGVPSRMNVGQI ETHLG Sbjct: 1071 RIQPGDKMAGRHGNKGVISRICPVEDMPYDETGRPVDICLNPLGVPSRMNVGQILETHLG 1130 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWK 1201 A GLG KI +++ + DI L+SFL K+ D ++ +A + Sbjct: 1131 LAAEGLGAKINAML---EQQADIKELKSFLHKIYNETQGQKVDFDSLTDAEIIELAGNLR 1187 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 GVP+++PVFDGA E+ I ++LR+ADL ESGQ LYDG++GE FDRPVTVGY+Y LKLNH Sbjct: 1188 KGVPMASPVFDGASEDEIKALLRLADLPESGQMKLYDGISGEEFDRPVTVGYMYYLKLNH 1247 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQEMLT+KSDD Sbjct: 1248 LVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEMLTVKSDD 1307 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 + GRTR+Y++IV GN+ E G PESF+VL KE++ALG+ I+LE Sbjct: 1308 LNGRTRMYKNIVDGNEYMEPGIPESFSVLRKEIRALGIDIELEQE 1352 >gi|219681976|ref|YP_002468360.1| DNA-directed RNA polymerase beta chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254765278|sp|B8D6V0|RPOB_BUCAT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|219621709|gb|ACL29865.1| DNA-directed RNA polymerase beta chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085782|gb|ADP65864.1| DNA-directed RNA polymerase subunit beta [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 1342 Score = 1603 bits (4150), Expect = 0.0, Method: Composition-based stats. Identities = 696/1364 (51%), Positives = 967/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ PD GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPKVLDIPYLLSIQLNSFKKFIQ----PDLSGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++G + L++VSY FDV +C R TY+ PL++ LRL++++ D ++ Sbjct: 57 FPIRGYNGNSELQYVSYRLGETIFDVKECQIRGATYSAPLRVKLRLVIYERDI--LEATV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTF+I G +R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTNNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+PV+ L AL ++EEIL+ F+ K ++ Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPVSIILRALNYNTEEILNIFFEKNIFKIEN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S ++ G +E G+++T+ ++ LK +K + + + Sbjct: 235 NKIVLELVPERL-RGETASFNIK--KNGIIYVEKGRRITAKHIQELKNNKIKSITVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V+++ V+ +TGE I + + + LE++ S I L+ + +++ YI TL Sbjct: 292 ILGRIVSKNYVDKKTGETIISSNTELSLEILEKLKKSGFYSIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYRVMRPG+ T E++F LFF D+YDLSTVGR+K N L Sbjct: 352 RIDSSNDRMSALIEIYRVMRPGEPPTKEATENLFENLFFSEDRYDLSTVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDII +IK ++D+RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 412 EETKGSSTLNKEDIIDVIKKIIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSIGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N+YGF+ETPY Sbjct: 532 ALGLGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNSYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKVC+G V+ ++ YLSA+EE N IAQAN+++D+ G FT++LV CR GE L R +++ Sbjct: 592 RKVCNGLVSEEIHYLSAIEEGNYIIAQANTNIDKTGFFTDDLVTCRHKGESSLFNRNQVN 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP LK + P +GTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLKTDKPLIGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR+G+V+ VDA RIVI+ E ++ +G+DIY L K+ RSNQNTC+NQ+P V Sbjct: 712 SGVTAVAKRSGVVQYVDASRIVIKVDEKEMYSREAGIDIYNLTKYTRSNQNTCINQQPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+++++ D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEKIKKGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLG EEI+ DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCISRDTKLGAEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV+IF R G+ K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDGVKKDKRALEIEDM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D +E I + ++++ + + + + + + P +W+ Sbjct: 952 QLKKIKQDLTEEFKIFESSLFTHIKKTFISLD-------------IETKQLDTLPFEKWF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ + ++ +E L Q+ K + + K +KI GDD+ PGVL++VKV++A+KR Sbjct: 999 SVDIKQKDKKKEIEKLAKQHHELKEEFNKKIEIKRQKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPVEDMPYDENGIPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI ++ + ++ + + + ++ +LR+A+ K+ Sbjct: 1119 MAAKGIGDKINHMLKTQEKISNLRKFIQKAFDLGDNLRQKVNLDTFSNEEILRLAKNLKN 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P+STPVFDGA E I ML+ A L SGQ IL+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GIPISTPVFDGAQENEIKQMLKFAGLPTSGQIILFDGRTGEKFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELESE 1342 >gi|219681420|ref|YP_002467805.1| DNA-directed RNA polymerase beta chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471095|ref|ZP_05635094.1| DNA-directed RNA polymerase subunit beta [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254765277|sp|B8D8J6|RPOB_BUCA5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|219624263|gb|ACL30418.1| DNA-directed RNA polymerase beta chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 1342 Score = 1602 bits (4149), Expect = 0.0, Method: Composition-based stats. Identities = 695/1364 (50%), Positives = 966/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ PD GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPKVLDIPYLLSIQLNSFKKFIQ----PDLSGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++G + L++VSY FDV +C R TY+ PL++ LRL++++ D ++ Sbjct: 57 FPIRGYNGNSELQYVSYRLGETIFDVKECQIRGATYSAPLRVKLRLVIYERDI--LEATV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTF+I G +R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTNNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+PV+ L AL ++EEIL+ F+ K ++ Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPVSIILRALNYNTEEILNIFFEKNIFKIEN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S ++ G +E G+++T+ ++ LK +K + + + Sbjct: 235 NKIVLELVPERL-RGETASFNIK--KNGIIYVEKGRRITAKHIQELKNNKIKSITVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V+++ V+ +TGE I + + + LE++ I L+ + +++ YI TL Sbjct: 292 ILGRIVSKNYVDKKTGETIISSNTELSLEILEKLKKLGFYSIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYRVMRPG+ T E++F LFF D+YDLSTVGR+K N L Sbjct: 352 RIDSSNDRMSALIEIYRVMRPGEPPTKEATENLFENLFFSEDRYDLSTVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDII +IK ++D+RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 412 EETKGSSTLNKEDIIDVIKKIIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSIGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N+YGF+ETPY Sbjct: 532 ALGLGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNSYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKVC+G V+ ++ YLSA+EE N IAQAN+++D+ G FT++LV CR GE L R +++ Sbjct: 592 RKVCNGLVSEEIHYLSAIEEGNYIIAQANTNIDKTGFFTDDLVTCRHKGESSLFNRNQVN 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP LK + P +GTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLKTDKPLIGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR+G+V+ VDA RIVI+ E ++ +G+DIY L K+ RSNQNTC+NQ+P V Sbjct: 712 SGVTAVAKRSGVVQYVDASRIVIKVDEKEMYSREAGIDIYNLTKYTRSNQNTCINQQPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+++++ D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEKIKKGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLG EEI+ DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCISRDTKLGAEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV+IF R G+ K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDGVKKDKRALEIEDM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D +E I + ++++ + + + + + + P +W+ Sbjct: 952 QLKKIKQDLTEEFKIFESSLFTHIKKTFISLD-------------IETKQLDTLPFEKWF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ + ++ +E L Q+ K + + K +KI GDD+ PGVL++VKV++A+KR Sbjct: 999 SVDIKQKDKKKEIEKLAKQHHELKEEFNKKIEIKRQKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPVEDMPYDENGIPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI ++ + ++ + + + ++ +LR+A+ K+ Sbjct: 1119 MAAKGIGDKINHMLKTQEKISNLRKFIQKAFDLGDNLRQKVNLDTFSNEEILRLAKNLKN 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P+STPVFDGA E I ML+ A L SGQ IL+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GIPISTPVFDGAQENEIKQMLKFAGLPTSGQIILFDGRTGEKFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELESE 1342 >gi|311086935|gb|ADP67015.1| DNA-directed RNA polymerase subunit beta [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 1342 Score = 1602 bits (4147), Expect = 0.0, Method: Composition-based stats. Identities = 696/1364 (51%), Positives = 967/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ PD GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPKVLDIPYLLSIQLNSFKKFIQ----PDLSGQNGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++G + L++VSY FDV +C R TY+ PL++ LRL++++ D ++ Sbjct: 57 FPIRGYNGNSELQYVSYRLGETIFDVKECQIRGATYSAPLRVKLRLVIYERDI--LEATV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTF+I G +R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTNNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+PV+ L AL ++EEIL+ F+ K ++ Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPVSIILRALNYNTEEILNIFFEKNIFKIEN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S ++ G +E G+++T+ ++ LK +K + + + Sbjct: 235 NKIVLELVPERL-RGETASFNIK--KNGIIYVEKGRRITAKHIQELKNNKIKSITVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V+++ V+ +TGE I + + + LE++ S I L+ + +++ YI TL Sbjct: 292 ILGRIVSKNYVDKKTGETIISSNTELSLEILEKLKKSGFYSIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYRVMRPG+ T E++F LFF D+YDLSTVGR+K N L Sbjct: 352 RIDSSNDRMSALIEIYRVMRPGEPPTKEATENLFENLFFSEDRYDLSTVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDII +IK ++D+RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 412 EETKGSSTLNKEDIIDVIKKIIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSIGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N+YGF+ETPY Sbjct: 532 ALGLGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNSYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKVC+G V+ ++ YLSA+EE N IAQAN+++D+ G FT++LV CR GE L R +++ Sbjct: 592 RKVCNGLVSEEIHYLSAIEEGNYIIAQANTNIDKTGFFTDDLVTCRHKGESSLFNRNQVN 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP LK + P +GTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLKTDKPLIGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR+G+V+ VDA RIVI+ E ++ +G+DIY L K+ RSNQNTC+NQ+P V Sbjct: 712 SGVTAVAKRSGVVQYVDASRIVIKVDEKEMYSREAGIDIYNLTKYTRSNQNTCINQQPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+++++ D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEKIKKGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLG EEI+ DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCISRDTKLGAEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV+IF R G+ K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDGVKKDKRALEIEDM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D +E I + ++++ + + + + + + P +W+ Sbjct: 952 QLKKIKQDLTEEFKIFESSLFTHIKKTFISLD-------------IETKQLDTLPFEKWF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ + ++ +E L Q+ K + + K +KI GDD+ PGVL++VKV++A+KR Sbjct: 999 SVDIKQKDKKKEIEKLAKQHHELKEEFNKKIEIKRQKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGIPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI ++ + ++ + + + ++ +LR+A+ K+ Sbjct: 1119 MAAKGIGDKINHMLKTQEKISNLRKFIQKAFDLGDNLRQKVNLDTFSNEEILRLAKNLKN 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P+STPVFDGA E I ML+ A L SGQ IL+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GIPISTPVFDGAQENEIKQMLKFAGLPTSGQIILFDGRTGEKFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELESE 1342 >gi|260762027|ref|ZP_05874370.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260672459|gb|EEX59280.1| DNA-directed RNA polymerase subunit beta [Brucella abortus bv. 2 str. 86/8/59] Length = 1274 Score = 1600 bits (4142), Expect = 0.0, Method: Composition-based stats. Identities = 871/1272 (68%), Positives = 1054/1272 (82%), Gaps = 2/1272 (0%) Query: 105 TLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIH 164 TLRLIVFD+DE TGAKSIKDIKEQ +YMGD+PLMT +GTF++ G +R++VSQ+HRSPG+ Sbjct: 2 TLRLIVFDIDEDTGAKSIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVF 61 Query: 165 FDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD 224 FDHDKG+ SGKLL+A R+IP +G W+DIEFDSKDI++ RIDRRRK+P T+ LMALGMD Sbjct: 62 FDHDKGKTHSSGKLLFAARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMD 121 Query: 225 SEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGL 284 EEILSTFY + Y++ GD W P SA G K+ S LVD DTGE V+E+GKKLT+ Sbjct: 122 GEEILSTFYKTVTYTRDGDNWRIPYSAE-RFKGMKIISDLVDADTGEVVLEAGKKLTARA 180 Query: 285 LKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDI 344 K L EKG+K + T D L G Y+AED+VN TGEIY+EAGD IDEK L+ + + +I Sbjct: 181 AKQLAEKGLKAIKATEDDLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEI 240 Query: 345 PILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSD 404 +L +D VN AYIRNTL DKN+ R++AL DIYRVMRPG+ T AE+MF+ LFFDS+ Sbjct: 241 DVLDIDHVNIGAYIRNTLAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFHSLFFDSE 300 Query: 405 KYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRV 464 +YDLS VGRVKMNMRL+LD D VR +RKEDI+A++K+LV+LR+G+G IDDIDNLGNRRV Sbjct: 301 RYDLSAVGRVKMNMRLDLDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRV 360 Query: 465 RSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQ 524 RSVGE+++NQYR+GLLRMER+IKER+SS++ID+VMPQDLINAKP +AV EFF SSQLSQ Sbjct: 361 RSVGELMENQYRVGLLRMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQ 420 Query: 525 LEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + N LS ITH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++ Sbjct: 421 FMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIN 480 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 SL +FARVN YGFIE+PYRKV DGKVTNDVVYLSAMEE +AQAN LDE G F +E Sbjct: 481 SLATFARVNKYGFIESPYRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDEQGGFVDEF 540 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLL 704 V CR AGE ++ PRE +D +D SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL+ Sbjct: 541 VICRHAGEVMMAPRENVDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLV 600 Query: 705 KAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRL 764 +AEAPFVGTGME +VA+ SGAAI A+R GIV+QVDA RIVIR+ E LDPS SGVDIYRL Sbjct: 601 RAEAPFVGTGMEPIVARDSGAAIAARRGGIVDQVDATRIVIRATEE-LDPSKSGVDIYRL 659 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 KFQRSNQ+TC+NQRPLV+VGD + + DIIADGPSTDLGDLALGRN+LVAFMPW+GYN+E Sbjct: 660 QKFQRSNQSTCINQRPLVRVGDRIHKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYE 719 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 DS+L+SE++VS+DVFTSIHIEEFEV ARDTKLGPEEITRDIPNVSEE LKN+DE GI+ + Sbjct: 720 DSILLSEKIVSDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYI 779 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 GAEV+PGDILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTS+R+P G GTVV+VR+ Sbjct: 780 GAEVHPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRV 839 Query: 945 FNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKK 1004 FNRHG++K+ER++++ERE+IE LA+D+DDEQ ILDRN+Y RL +++ G+ A +GPKGFKK Sbjct: 840 FNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKK 899 Query: 1005 STVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD 1064 T ++ +L++EYPRSQWWQFAV+DEK+Q +E+L+ QY+ SK +LE RF +K+EK+Q GD Sbjct: 900 GTTITRELMTEYPRSQWWQFAVEDEKLQGELEALRSQYDDSKKLLEARFMDKVEKVQRGD 959 Query: 1065 DMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNP 1124 +MPPGV+++VKVFVA+KR IQ GDKMAGRHGNKG+VSRILP EDMPFL+DGT DIVLNP Sbjct: 960 EMPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNP 1019 Query: 1125 LGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEK 1184 LGVPSRMNVGQI ETHLGWAC G+GKKI L++ Y+ +I PLR LE + E Sbjct: 1020 LGVPSRMNVGQILETHLGWACAGMGKKIGELLDVYRKTANIEPLRQTLEHIYPDNDRNEP 1079 Query: 1185 ISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 + YDDD++L +A Q K GV ++TPVFDGA E IN+ML A L SGQS LYDG TGEP Sbjct: 1080 VRSYDDDAILMLANQVKRGVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEP 1139 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 FDR VT+GYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++A Sbjct: 1140 FDRQVTMGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1199 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAAY LQEMLT+KSDDV GRT+VYE+IV G+DTFE G PESFNVLVKEM++LGL+++L+ Sbjct: 1200 YGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELD 1259 Query: 1365 NSRTKNSAKMEE 1376 ++R + + Sbjct: 1260 DTREAEQPALPD 1271 >gi|126640375|ref|YP_001083359.1| DNA-directed RNA polymerase subunit beta [Acinetobacter baumannii ATCC 17978] Length = 1336 Score = 1600 bits (4142), Expect = 0.0, Method: Composition-based stats. Identities = 708/1348 (52%), Positives = 968/1348 (71%), Gaps = 21/1348 (1%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 +D P L+ +Q SY FL +P R + GLQAAF+SVFPI ++SG A LEFV Y Sbjct: 1 MDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSVFPIESYSGNAALEFVEYSLGK 60 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 P+FDV +C+ R TYA P+++ +RLI+ D + KSIKD++EQ +YMG++PLMT++GT Sbjct: 61 PEFDVRECILRGSTYAAPMRVKIRLIIKDRE----TKSIKDVREQEVYMGEIPLMTENGT 116 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 FVI G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ RIIP +G W+D EFD+KD+++ Sbjct: 117 FVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIPYRGSWLDFEFDAKDLVY 176 Query: 204 VRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 VRIDRRRK+ T L ALG ++E+IL+ FY K+ + L L G Sbjct: 177 VRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDMGSYQIDLVPERL-RGEMAQFD 235 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 + D + G+ ++E GK++ + ++ ++ G+ L + + L AEDI + GE+ Sbjct: 236 ITDNE-GKVIVEQGKRINARHVRQMEAAGLTKLSVPDEYLYERITAEDITLRD-GEVIA- 292 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 A ++ + + ++ ++ IL+ + ++ +++ +TL D +DR++AL++IY+VMRP Sbjct: 293 ANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTLRADLTRDREEALVEIYKVMRP 352 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP--------DDVRHIRKED 435 G+ T AE++FN LFF S++YDLS VGR+K N RL + + ED Sbjct: 353 GEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQKSREVEGILSHED 412 Query: 436 IIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDI 495 II +++ LV++RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ER++KER+S + Sbjct: 413 IIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRVERAVKERLSQAET 472 Query: 496 DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAG 555 D++ PQDLINAKPV +A+ EFF SSQLSQ + N LS ITH RR+SALG GG+ R RAG Sbjct: 473 DNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAG 532 Query: 556 VEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVV 615 E+RDVH THYGR+CP ET EG NIGL++SL+ +A+ N +GF+ETPYRKV DG+VT+DV Sbjct: 533 FEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPYRKVIDGRVTDDVE 592 Query: 616 YLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIA 675 YLSA+EE IAQA+S++D+DG+ TEE V R GE + +P EK+ +D S +QVVS+A Sbjct: 593 YLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFVRMPPEKVTHMDVSAQQVVSVA 652 Query: 676 ASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIV 735 ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME+ VA+ SG ++A R G++ Sbjct: 653 ASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMEANVARDSGVCVIANRGGVI 712 Query: 736 EQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIA 795 E VDA RIVIR E ++ +GVDIY L+K+ RSNQNTC+NQ +V +GD+V R DI+A Sbjct: 713 EYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNTCINQNVIVNLGDKVARGDILA 772 Query: 796 DGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTK 855 DGPSTD+G+LALG+NM VAFM W+GYN+EDS+L+SER++ ED TSIHI+E +ARDTK Sbjct: 773 DGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSIHIQELSCVARDTK 832 Query: 856 LGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRA 915 LG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRA Sbjct: 833 LGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKGETQLTPEEKLLRA 892 Query: 916 IFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQ 975 IFGEKA DV+D+SLRVPSG GTV+DV++F R G++K++R++++E+ Q++ +D +E Sbjct: 893 IFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKAQLDSYRKDLKEEY 952 Query: 976 VILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNV 1035 I + R++ +L GQ + G K+ LS DL+S + DE + + Sbjct: 953 KIFEEAARERVIRLLKGQESNGG-GSTKRGDKLSEDLLSGLELVDLLEIQPADEAIAERL 1011 Query: 1036 ESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHG 1095 ++V + + ++++F K K+ GD++ GVL+VVKV++A+KR IQ GDKMAGRHG Sbjct: 1012 TQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRRIQPGDKMAGRHG 1071 Query: 1096 NKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSL 1155 NKG+VS ILP EDMP +G PVDIVLNPLGVPSRMNVGQI ETHLG A GLG KI+ + Sbjct: 1072 NKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVGQILETHLGMAAKGLGDKIEKM 1131 Query: 1156 INDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGA 1214 + + + + LR FL+K+ G E + D+ +L +A ++GVP++TPVFDGA Sbjct: 1132 LKEQRT---VLELREFLDKIYNKVGGEQEDLDSLTDEEILALAGNLRAGVPLATPVFDGA 1188 Query: 1215 DEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGS 1274 +E I +L +AD+ +GQ++L+DG TGE FDRPVTVGY+YMLKLNH+V DK++ARSTGS Sbjct: 1189 EESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGYMYMLKLNHLVDDKMHARSTGS 1248 Query: 1275 YSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVA 1334 YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRTR+Y++IV Sbjct: 1249 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTRIYKNIVD 1308 Query: 1335 GNDTFETGTPESFNVLVKEMQALGLSID 1362 GN + G PESFNVL KE+++LG++ID Sbjct: 1309 GNHYMDPGMPESFNVLTKEIRSLGINID 1336 >gi|94676492|ref|YP_588937.1| DNA-directed RNA polymerase, beta subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|158564233|sp|Q1LSX7|RPOB_BAUCH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|94219642|gb|ABF13801.1| DNA-directed RNA polymerase, beta subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 1340 Score = 1599 bits (4140), Expect = 0.0, Method: Composition-based stats. Identities = 696/1364 (51%), Positives = 947/1364 (69%), Gaps = 24/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK +++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MLYSYTEKKRIRKDFGKRSQVLDVPYLLSIQLESFQKFIERD----NEGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L++VSY P FDV +C R LT++ PL++ LRLI+ D T Sbjct: 57 FPIQSYSGNAELQYVSYHLGEPVFDVKECQTRGLTFSAPLRVILRLIIRDATTETP---- 112 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 IKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+L+ Sbjct: 113 --IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKIHSSGKVLFNA 170 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + + +IL TF+ K+++ Sbjct: 171 RIIPYRGSWLDFEFDQKDHLFVRIDRRRKLPATIILRALQLSTNQILDTFFEKVIFHLND 230 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S ++ G + G+++T+ + LK + + + + Sbjct: 231 EHIQMELVPERL-RGETASFDII--ANGTIYVNKGRRITARHIHQLKIDSIDRINVPREY 287 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D ++ TGEI + A I + L+++ + + I L+ + +++ AYI TL Sbjct: 288 LVGKIIAIDYIHDNTGEIIVPANIEITLEILDKLGKANFKRIETLFTNDLDHGAYISETL 347 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +DR AL++IYR+MRPG+ T AE++F +FF D+YDLS VGR+K N L Sbjct: 348 RIDSTRDRLSALVEIYRMMRPGEPPTREAAENLFENIFFSEDRYDLSAVGRMKFNRALLR 407 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + + K DII ++K L+D+RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 408 EEIEGSGLLSKSDIIEVMKKLIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRIGLVRV 467 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D++S+MPQD+INAKP+ +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 468 ERAVKERLSLSDLESLMPQDIINAKPISAAIKEFFGSSQLSQFMDQNNPLSEITHKRRIS 527 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 528 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAKTNEYGFLETPY 587 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V + VT ++ YLSA+EE N IAQAN++LD+ G+F EELV CR GE REK+ Sbjct: 588 RLVHNSVVTEEIHYLSAIEEGNFIIAQANTNLDDKGNFVEELVTCRHKGESGFFSREKVH 647 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+ + P VGTGME +VA Sbjct: 648 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRTDKPLVGTGMERIVAVD 707 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR GIV+ VDA RIVI ++ +G+DIY + K+ RSNQNTC++Q+P V Sbjct: 708 SGVTVVAKRGGIVQYVDASRIVINVHSDEMYSGEAGIDIYHMTKYIRSNQNTCISQKPCV 767 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R +++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDSML+SER+V +D FT+I Sbjct: 768 TLGELVERGNVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSMLVSERVVQKDCFTTI 827 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E M+RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 828 HIQELACMSRDTKLGPEEITSDIPNVGEAALCKLDESGIVYIGAEVTSGDILVGKVTPKG 887 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G SGTV+DV+IF R G+ K++R++ +E Sbjct: 888 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGYSGTVIDVQIFTRDGVKKDKRTLEIEEM 947 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E+ I + +++R+ +L K R W Sbjct: 948 QLQQAKKDLTEERRIFEAALFTRIRHVLGSDITNIDIVKILK-----------LKREDWS 996 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 QF ++D +E L QY + ++ + K KI GDD+ PGVL++VKV++A+KR Sbjct: 997 QFNIKDNNKYCQLEQLAEQYYELNKVFANKLEEKRRKITQGDDLSPGVLKIVKVYIAVKR 1056 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1057 QIQPGDKMAGRHGNKGVISKINPIEDMPYDEKGIPVDIVLNPLGVPSRMNIGQILETHLG 1116 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI ++ +K + + ++ + D +L +AE K Sbjct: 1117 MAAKGIGDKINKMLKQHKNAEQLRQFIQKAYDIGDQVRQKVNLNLFSDQEILLLAENLKH 1176 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I ML++A+L SGQ L+DG TGEPF+R VTVGY+YMLKLNH+ Sbjct: 1177 GMPMATPVFDGAKEKEIKQMLQLAELPVSGQITLFDGRTGEPFERQVTVGYMYMLKLNHL 1236 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1237 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1296 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV N T E PESFNVL+KE+++LG++I+LE + Sbjct: 1297 NGRTKMYKNIVDCNHTMEPAMPESFNVLLKEIRSLGINIELEKN 1340 >gi|15616663|ref|NP_239875.1| DNA-directed RNA polymerase subunit beta [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11134500|sp|P57146|RPOB_BUCAI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|25288384|pir||A84934 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain [imported] - Buchnera sp. (strain APS) gi|10038726|dbj|BAB12761.1| DNA-directed RNA polymerase beta chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 1342 Score = 1599 bits (4140), Expect = 0.0, Method: Composition-based stats. Identities = 692/1364 (50%), Positives = 964/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ PD GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPKVLDIPYLLSIQLNSFKKFIQ----PDLSGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++G + L++VSY FDV +C R TY+ L++ LRL++++ D ++ Sbjct: 57 FPIRGYNGNSELQYVSYRLGETIFDVKECQIRGATYSAALRVKLRLVIYERDI--LEATV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTF+I G +R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTNNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+PV+ L AL ++EEIL+ F+ K ++ Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPVSIILRALNYNTEEILNIFFEKNIFKIEN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S ++ G +E G+++T+ ++ LK +K + + + Sbjct: 235 NKIVLELVPERL-RGETASFNIK--KNGIIYVEKGRRITAKHIQELKNNKIKSITVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V+++ V+ +TGE I + + + LE++ I L+ + +++ YI TL Sbjct: 292 ILGRIVSKNYVDKKTGETIISSNTELSLEILEKLKKLGFYSIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYRVMRPG+ T E++F LFF D+YDLSTVGR+K N L Sbjct: 352 RIDSSNDRMSALIEIYRVMRPGEPPTKEATENLFENLFFSEDRYDLSTVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDII +IK ++D+RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 412 EETKGSSTLNKEDIIDVIKKIIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSIGDLDALMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N++GF+ETPY Sbjct: 532 ALGLGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNSHGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKVC+G V+ ++ YLSA+EE N IAQAN+++D+ G FT++LV CR GE L R +++ Sbjct: 592 RKVCNGLVSEEIHYLSAIEEGNYIIAQANTNIDKTGFFTDDLVTCRHKGESSLFNRNQVN 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPF E+DD+NR LMG NMQRQAVP LK + P +GTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFPEHDDANRALMGANMQRQAVPTLKTDKPLIGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR+G+V+ VDA RIVI+ E ++ +G+DIY L K+ RSNQNTC+NQ+P V Sbjct: 712 SGVTAVAKRSGVVQYVDASRIVIKVDEKEMYSREAGIDIYNLTKYTRSNQNTCINQQPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+++++ D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEKIKKGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLG EEI+ DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCISRDTKLGAEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV+IF R G+ K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDGVKKDKRALEIEDM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D +E I + ++++ + + + + + + P +W+ Sbjct: 952 QLKKIKQDLTEEFKIFESSLFTHIKKTFISLD-------------IETKQLDTLPFEKWF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ + ++ +E L Q+ K + + K +KI GDD+ PGVL++VKV++A+KR Sbjct: 999 SVDIKQKDKKKEIEKLAKQHHELKEEFNKKIEIKRQKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPVEDMPYDENGIPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI ++ + ++ + + + ++ +LR+A+ K+ Sbjct: 1119 MAAKGIGDKINHMLKTQEKISNLRKFIQKAFDLGDNLRQKVNLDTFSNEEILRLAKNLKN 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P+STPVFDGA E I ML+ A L SGQ IL+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GIPISTPVFDGAQENEIKQMLKFAGLPTSGQIILFDGRTGEKFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELESE 1342 >gi|311086357|gb|ADP66438.1| DNA-directed RNA polymerase subunit beta [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 1342 Score = 1598 bits (4139), Expect = 0.0, Method: Composition-based stats. Identities = 695/1364 (50%), Positives = 966/1364 (70%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ PD GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPKVLDIPYLLSIQLNSFKKFIQ----PDLSGQHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++G + L++VSY FDV +C R TY+ PL++ LRL++++ D ++ Sbjct: 57 FPIRGYNGNSELQYVSYRLGETIFDVKECQIRGATYSAPLRVKLRLVIYERDI--LEATV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTF+I G +R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTNNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+PV+ L AL ++EEIL+ F+ K ++ Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPVSIILRALNYNTEEILNIFFEKNIFKIEN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S ++ G +E G+++T+ ++ LK +K + + + Sbjct: 235 NKIVLELVPERL-RGETASFNIK--KNGIIYVEKGRRITAKHIQELKNNKIKSITVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V+++ V+ +TGE I + + + LE++ S I L+ + +++ YI TL Sbjct: 292 ILGRIVSKNYVDKKTGETIISSNTELSLEILEKLKKSGFYSIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYRVMRPG+ T E++F LFF D+YDLSTVGR+K N L Sbjct: 352 RIDSSNDRMSALIEIYRVMRPGEPPTKEATENLFENLFFSEDRYDLSTVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + KEDII +IK ++D+RNGKG +DDID+LGNRRVRSVGEM +NQ+R+GL+R+ Sbjct: 412 EETKGSSTLNKEDIIDVIKKIIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSIGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N+YGF+ETPY Sbjct: 532 ALGLGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNSYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKVC+G V+ ++ YLSA+EE N IAQAN+++D+ G FT++LV CR GE L R +++ Sbjct: 592 RKVCNGLVSEEIHYLSAIEEGNYIIAQANTNIDKTGFFTDDLVTCRHKGESSLFNRNQVN 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP LK + P +GTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLKTDKPLIGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR+G+V+ VDA RIVI+ E ++ +G+DIY L K+ RSNQNTC+NQ+P V Sbjct: 712 SGVTAVAKRSGVVQYVDASRIVIKVDEKEMYSREAGIDIYNLTKYTRSNQNTCINQQPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+++++ D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 NLGEKIKKGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLG EEI+ DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCISRDTKLGAEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV+IF R G+ K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDGVKKDKRALEIEDM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ + +D +E I + ++++ + + + + + + P +W+ Sbjct: 952 QLKKIKQDLTEEFKIFESSLFTHIKKTFISLD-------------IETKQLDTLPFEKWF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ + ++ +E L Q+ K + + K +KI GDD+ PGVL++VKV++A+KR Sbjct: 999 SVDIKQKDKKKEIEKLAKQHHELKEEFNKKIEIKRQKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPVEDMPYDENGIPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI ++ + ++ + + + ++ +LR+A+ K+ Sbjct: 1119 MAAKGIGDKINHMLKTQEKISNLRKFIQKAFDLGDNLRQKVNLDTFSNEEILRLAKNLKN 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P+STPVFDGA E I ML+ A L SGQ IL+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GIPISTPVFDGAQENEIKQMLKFAGLPTSGQIILFDGRTGEKFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLV QQPLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVAQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELESE 1342 >gi|319942164|ref|ZP_08016481.1| hypothetical protein HMPREF9464_01700 [Sutterella wadsworthensis 3_1_45B] gi|319804299|gb|EFW01188.1| hypothetical protein HMPREF9464_01700 [Sutterella wadsworthensis 3_1_45B] Length = 1387 Score = 1598 bits (4138), Expect = 0.0, Method: Composition-based stats. Identities = 688/1394 (49%), Positives = 953/1394 (68%), Gaps = 37/1394 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNE-GLQAAFKS 61 F R+RK F P ++++P L+++Q SY+ FL +N+ P R N GLQAAF S Sbjct: 1 MSYSFTEKKRIRKSFASRPSVLEVPSLLDIQLRSYEDFLQVNVKPAARSNNLGLQAAFTS 60 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 +FPIT+ +G A L F YE P+FDV +C R LTY+ L+ +RL ++D + + Sbjct: 61 IFPITSHNGFARLRFAGYELAEPEFDVAECQLRGLTYSSRLRAKIRLEIYDREAAQPE-T 119 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 IK+I+E +YMG++PLMT+ G+F++ G +R++VSQLHRSPGI F+HDKG+ SGKLL++ Sbjct: 120 IKEIRENDVYMGEVPLMTEKGSFIVNGTERVIVSQLHRSPGIFFEHDKGKTHSSGKLLFS 179 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 R+IP +G W+D EFD+KDI++ R+DRRRK+P T L A+G E+IL+ F+ ++ Sbjct: 180 ARVIPYRGSWLDFEFDAKDILYFRVDRRRKMPGTILLKAIGYSVEDILARFFAFDSFTLL 239 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 P+ L +S +VD + G+ ++ K++T+ L+ L + V + + D Sbjct: 240 KSGAKLPVVPERL-KAQTMSFDIVDAE-GKVIVPHDKRITAKHLRDLNKANVTTITVPDD 297 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G + + I++ ETGE+ A D I E L + + +R L+ + +++ AYI NT Sbjct: 298 YLLGRVLGKTIIDQETGEVIANANDEITETVLAAMRAARVRKFDALFTNELDHGAYISNT 357 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D D+ A + IYR+MRPG+ T ES+F+ LFFD D YDLS VGR+K+N R Sbjct: 358 LRLDDTPDQFSARVAIYRMMRPGEPPTEEAVESLFDRLFFDPDAYDLSRVGRMKVNARFG 417 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTID-----------------DIDNLGNRRV 464 + + R + KEDI+ + +LV LRNG+ +D DID+LGNRRV Sbjct: 418 RPSAEGERTLTKEDIVDTMAMLVALRNGQDNVDLVNEKGEVRTCVVNGVDDIDHLGNRRV 477 Query: 465 RSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQ 524 R VGE+ +NQ+R GL+R+ER++KER++ + D + PQDLIN+KP+ +A+ EFF SSQLSQ Sbjct: 478 RCVGELAENQFRAGLVRVERAVKERLNQAESDGLTPQDLINSKPISAAIREFFGSSQLSQ 537 Query: 525 LEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + N LS ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++ Sbjct: 538 FMDQTNPLSEITHKRRISALGPGGLTRERAGFEVRDVHSTHYGRVCPIETPEGPNIGLIN 597 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 SL +AR+N YGF+ETPYRKV DG T ++ YLSA+EE IAQAN+ +D++G T+EL Sbjct: 598 SLALYARLNEYGFLETPYRKVVDGVATKEIHYLSAIEEGKYIIAQANAEMDDNGRLTQEL 657 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLL 704 V R GE IL E+I ++D +P Q+VS AA+LIPFLE+DD+NR LMG NMQRQ VP L Sbjct: 658 VSARDNGETILASPERIQYMDVAPAQIVSCAAALIPFLEHDDANRALMGANMQRQGVPCL 717 Query: 705 KAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRL 764 + E P VGTG+E VA S A+ A+R G+V+ VDA R+VIR + + +GVDIY L Sbjct: 718 RPEKPVVGTGIERTVAVDSKTAVQARRGGVVDYVDANRVVIRVNDDESVAGETGVDIYNL 777 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 KF RSNQ+T +NQRP+V GD V D++ADG STD G+LALG+NML+AFMPW+GYN+E Sbjct: 778 QKFTRSNQSTNINQRPIVVKGDHVAVGDVLADGASTDTGELALGQNMLIAFMPWNGYNYE 837 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 DS+LISER+V++D +TSIHIEE V++RDTKLGPEEITRDI N+SE L +D+ GI+ + Sbjct: 838 DSVLISERVVADDRYTSIHIEELSVVSRDTKLGPEEITRDISNLSESQLARLDDSGIVFI 897 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 GAEV GD+LVGK+TPKGE+ +TPEEKLLR IFGEKA DV+DTSLRVPSG++GTV+DV++ Sbjct: 898 GAEVKAGDVLVGKVTPKGETQLTPEEKLLRVIFGEKASDVKDTSLRVPSGMTGTVIDVQV 957 Query: 945 FNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK--GF 1002 F R G+ +++R+ S+ + ++ RD DD+ I++R+ + RL L G VS K G Sbjct: 958 FTRDGVKRDKRAESIIADALKRYRRDLDDQLRIVERDSFDRLRRQLAGHKVVSTMKFDGL 1017 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 VL+ + ++ + +++E Q ++ K E ++ +++ K +K+ Sbjct: 1018 PADGVLTPEFLASVQGYDLFGLRMEEEVAQHFIDLTKQAIEHTREDNARKYEIKNDKLTR 1077 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++PPGVL++VKV++A +R +Q GDKMAGRHGNKG+VS+I P EDMP++ DG P DIVL Sbjct: 1078 GDELPPGVLKMVKVYIAERRRLQPGDKMAGRHGNKGVVSKICPVEDMPYMADGRPADIVL 1137 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182 NPLGVPSRMN+GQ+ E HLGWA GLG +I+ ++ +R+FL ++ Sbjct: 1138 NPLGVPSRMNIGQVLEVHLGWAAKGLGWRIEKML----KTETARQIRAFLNEIYNRTGKH 1193 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG---------- 1232 E + D+ ++R+A ++GVP +TPVFDGA+EE I ML +A D+ Sbjct: 1194 EDLDSLSDEELMRMARNLQNGVPFATPVFDGANEEQIRMMLDLAFPDDEAQRLQLTSSKT 1253 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 Q+ LYDG TG+ F+RPVTVGY++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQ Sbjct: 1254 QATLYDGRTGDAFERPVTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQ 1313 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAAYVLQEMLT+KSDDV GRT++YE+IV G E G PESFNVLVK Sbjct: 1314 RFGEMEVWALEAYGAAYVLQEMLTVKSDDVNGRTKMYENIVKGEHKIEAGMPESFNVLVK 1373 Query: 1353 EMQALGLSIDLENS 1366 E+++LG+ IDL + Sbjct: 1374 EIRSLGIDIDLVKN 1387 >gi|118594007|ref|ZP_01551354.1| DNA-directed RNA polymerase beta subunit [Methylophilales bacterium HTCC2181] gi|118439785|gb|EAV46412.1| DNA-directed RNA polymerase beta subunit [Methylophilales bacterium HTCC2181] Length = 1389 Score = 1595 bits (4131), Expect = 0.0, Method: Composition-based stats. Identities = 701/1396 (50%), Positives = 971/1396 (69%), Gaps = 39/1396 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K +++IP L+ +Q SY FL + ++R GL++ F ++ Sbjct: 1 MSYSFTEKKRIRKSFAKRETVLEIPYLLAMQLESYKAFLQREVKVEDREIAGLESTFNTL 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI++ SG A L++VSY FDV +C R LTYAVPL++ +RL + D +I Sbjct: 61 FPISSHSGNAKLDYVSYNLGKEVFDVKECQQRGLTYAVPLRVKVRLTIMDK--EASQPTI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT++G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVKEQEVYMGEIPLMTQNGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++ RIDRRRK+PVT+ L ALG+ SEEILSTFY + + Sbjct: 179 RVIPYRGSWLDFEFDPKDYLYFRIDRRRKMPVTTLLKALGLSSEEILSTFYDLDTFEIKS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + F + G + D G +I K++T ++ +++ G+K + + SD Sbjct: 239 NAFQFHIIPE-RFRGEIAKFDIKDKK-GNVIIAKDKRITVKHIREIEKAGIKTISVDSDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +++ I++ ++GE+ E I E+ +E++ ++ + LY + +++ ++ TL Sbjct: 297 LVGRKISKAIIDKDSGEVIAETNAEITEELIEKLLELKVPEFNTLYSNDLDHGDFLSQTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 +D D+ A + IYR+MRPG+ T +F LFF++D+YDLS VGR+K N R Sbjct: 357 ASDDVPDQYSAKVAIYRMMRPGEPPTEDSVNGLFEGLFFNADRYDLSNVGRMKFNRRAFP 416 Query: 423 DT-------------------PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRR 463 T + +DI+A++ +L++LRNG+G IDDID+LGNRR Sbjct: 417 KTYDQYAEWMKRFHDGVGDKDETGESILSHQDILAVVGLLIELRNGRGEIDDIDHLGNRR 476 Query: 464 VRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLS 523 +RSVGE+++NQ+R GL+R+ER++KER+ + D++MP DLIN+KP+ SA+ EFF SSQLS Sbjct: 477 IRSVGELVENQFRTGLVRVERAVKERLGQAEADNLMPHDLINSKPISSAIREFFGSSQLS 536 Query: 524 QLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLV 583 Q + N LS ITH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+ Sbjct: 537 QFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHSTHYGRVCPIETPEGPNIGLI 596 Query: 584 SSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEE 643 +SL FAR N YGF+ETPYR+V GKVT D+ YLSA+EE + IAQANS L +G F EE Sbjct: 597 NSLAMFARTNKYGFLETPYRRVEGGKVTADIEYLSAIEESDYTIAQANSELGTNGKFKEE 656 Query: 644 LVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPL 703 LV R E + + +DF+D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP Sbjct: 657 LVSSRYKNEFTMAGNDSVDFMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPC 716 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 L+AE VGTG+E VA SG + AKR GIV+ VD+ RIV++ E + GVDIY Sbjct: 717 LRAEKALVGTGIERTVAMDSGTTVQAKRGGIVDYVDSNRIVVKVNEKETAQDGIGVDIYN 776 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 L K+ RSNQNT +NQ+PLV++GD++ R +IADG STDLG+LALG+NMLV FMPW+GYNF Sbjct: 777 LTKYTRSNQNTNINQKPLVRMGDKIDRGAVIADGASTDLGELALGQNMLVGFMPWNGYNF 836 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIIC 883 EDS+LISER+VS+D +TSIHIEE V+ARDTKLGPEEIT+DI N+SE + +D GII Sbjct: 837 EDSILISERVVSDDRYTSIHIEELSVVARDTKLGPEEITQDISNLSERMIGRLDNAGIIF 896 Query: 884 VGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVR 943 +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGT++DV+ Sbjct: 897 IGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTIIDVQ 956 Query: 944 IFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK 1003 +F R GID+++R+ + +Q+ +D D+ I++ +I+ R+ +IL + AV GPKG K Sbjct: 957 VFTREGIDRDDRAEQIIGDQLIAFKKDVADQLRIVESDIFGRIEKILLNKIAVGGPKGIK 1016 Query: 1004 KSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWG 1063 K LS + ++E + +W+ V D+K + +E++K + +K ++RF+ K K+ G Sbjct: 1017 KGDKLSKEKLAELGKYEWFDIRVSDDKDSKQLEAMKESFNFAKKEFDNRFEEKKRKLTQG 1076 Query: 1064 DDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLN 1123 D++PPGV ++VKV++A+KR IQ GDKMAGRHGNKG++S+I+P EDMP++ DG +DIVLN Sbjct: 1077 DELPPGVQKMVKVYLAVKRRIQPGDKMAGRHGNKGVISKIVPVEDMPYMADGKTLDIVLN 1136 Query: 1124 PLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHT 1182 PLGVPSRMN+GQI E HLGWA GLG +I ++ ++N +I+ +R FL+K+ + Sbjct: 1137 PLGVPSRMNIGQILEVHLGWAAKGLGDRIDEMM---RSNTNIAEVRKFLDKIYNTSSGKG 1193 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES----------- 1231 E I D+ V +AE +GVP +TPVFDG E I ML +A DES Sbjct: 1194 EDIQSLKDNEVKELAENLSNGVPFATPVFDGGAESDIQQMLDLAYPDESDHTKILNFAAN 1253 Query: 1232 -GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 Q L+DG TGE F+RPVTVGY+++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ G Sbjct: 1254 KTQVRLFDGRTGESFERPVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFG 1313 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGA+Y LQEMLT+KSDDV+GRT+VYE+IV G + G PESFNVL Sbjct: 1314 GQRFGEMEVWALEAYGASYTLQEMLTVKSDDVMGRTKVYENIVKGEHKIDAGMPESFNVL 1373 Query: 1351 VKEMQALGLSIDLENS 1366 KE+++L + IDL+ + Sbjct: 1374 TKEIRSLAIDIDLDRN 1389 >gi|71066442|ref|YP_265169.1| DNA-directed RNA polymerase subunit beta [Psychrobacter arcticus 273-4] gi|88909633|sp|Q4FQH3|RPOB_PSYA2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|71039427|gb|AAZ19735.1| RNA polymerase beta-subunit [Psychrobacter arcticus 273-4] Length = 1372 Score = 1594 bits (4127), Expect = 0.0, Method: Composition-based stats. Identities = 695/1379 (50%), Positives = 964/1379 (69%), Gaps = 23/1379 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F + P ++DIP L+ +Q SY+ FL + P R N GLQAA+ S+ Sbjct: 1 MAYSYTEKKRIRKSFAELPTVMDIPYLLSIQVDSYEQFLQEHKKPKARENTGLQAAYSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS- 121 FPI + SG A L+FV Y P+FD +C+ R T+A P+++ +RLI+ D D Sbjct: 61 FPIESHSGNAELQFVEYYLGTPEFDERECILRGSTFAAPMRVKIRLIIKDKDSKDKDSKA 120 Query: 122 -IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 IKDI+EQS+YMG++PLMT +GTF+I G +R++VSQLHRSPG+ FDHDKG++ SGK+LY Sbjct: 121 AIKDIREQSVYMGEMPLMTANGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 RIIP +G W+D EFD+KD++ RIDRRRK+ + L ALG+ + EIL F+ K+ + Sbjct: 181 NARIIPYRGSWLDFEFDAKDLVFARIDRRRKLLASIILRALGLSTSEILDLFFDKVKVYK 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + L A D + G +V + G+ V+E GK++ + ++ L+E G+ + I Sbjct: 241 GEEQFEIDLVA-DRLRGEMAQFDIVTPE-GDVVVEQGKRINARRIRQLEEAGMTKISIPD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSE----IRDIPILYVDSVNNNA 356 + L +AEDI+ E+ A +ID + L ++ E I++ IL+ + ++ + Sbjct: 299 EYLYERILAEDII--VNDEVIARANTLIDHELLVKLSAFEASESIKEFSILFTNDIDQGS 356 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 YI +TL D R++AL++IY+VMRPG+ T AE +F+ +FF++D+YDLS VGR+K Sbjct: 357 YIADTLRADSTSSREEALIEIYKVMRPGEPPTVETAEKLFDSMFFNADRYDLSNVGRMKF 416 Query: 417 NMRLNLDTPD--------DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 N RL LD D + + DI+ ++K L+++RNG+G +DDID+LGNRR+RSVG Sbjct: 417 NRRLGLDFVDTDDADIQRERSVLTNADIVNVLKELIEIRNGRGEVDDIDHLGNRRIRSVG 476 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 EM +NQ+R+GL+R+ER++KER+SS + D++ PQDLIN+KPV +AV EFF SSQLSQ + Sbjct: 477 EMAENQFRVGLVRVERAVKERLSSAESDNLSPQDLINSKPVAAAVKEFFGSSQLSQFMDQ 536 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 N LS +TH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL + Sbjct: 537 NNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHDTHYGRVCPIETPEGPNIGLINSLAT 596 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 FA+ N++GF+ETPYR+V DGKVT+ + YLSA+EE IAQA+S + DG+ ++E+V R Sbjct: 597 FAKTNSFGFLETPYRRVVDGKVTDVIEYLSAIEEVGTVIAQADSPVTADGALSDEMVSVR 656 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE + +P EK+ +D SP QVVS+AA LIPFLE+DD+NR LMG NMQRQAVP L+A+ Sbjct: 657 SYGEFVRMPPEKVTHMDVSPSQVVSVAAGLIPFLEHDDANRALMGSNMQRQAVPTLRADK 716 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME VA+ SG ++AKR G++E VDA RIV+R E ++ +G+DIY L+K+ Sbjct: 717 PLVGTGMERHVARDSGVCVIAKRGGVIEDVDASRIVVRVNEAEMIAGEAGIDIYNLVKYT 776 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQNTC+NQR +V GDE+ DI+ADGPSTDLG+LALG+N+ +AFMPW+GYNFEDS+L Sbjct: 777 RSNQNTCINQRIIVNQGDEIAFGDILADGPSTDLGELALGQNIRIAFMPWNGYNFEDSIL 836 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SE++V ED FT+IHI+E +ARDTKLG EEIT DIPNV E L ++DE GI+ +GAEV Sbjct: 837 LSEKVVKEDRFTTIHIQELTCVARDTKLGTEEITADIPNVGEAALSSLDEAGIVYIGAEV 896 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 + GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ GTV+DV++F R Sbjct: 897 DAGDILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDTSLRVPTSSKGTVIDVQVFTRD 956 Query: 949 GIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL 1008 G++K+ R+ ++E+ Q++ +D +E I + R+ +L GQ G G K T++ Sbjct: 957 GVEKDARARAIEKSQLDSYRKDLKEELRIFEEAARGRIGNLLDGQKVSGGS-GLKAGTIM 1015 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPP 1068 + + + +E++ + + + ++ +F K K+ GDD+ Sbjct: 1016 ALADMKDMSLETLLDIQPVEEEISERLTQIAEYLVDKQKDIDVKFAEKKRKLTAGDDLQH 1075 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV ++VKV++A+KR IQ GDKMAGRHGNKG+VSRI+P EDMP+ + G VDIVLNPLGVP Sbjct: 1076 GVQKIVKVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPVEDMPYDEHGNTVDIVLNPLGVP 1135 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISD 1187 SRMN+GQ+ ETHLG A GLG+KI ++ K+ I LR FL+K+ G + Sbjct: 1136 SRMNIGQVLETHLGMAAKGLGEKIDGML---KSQAAIKDLREFLDKIYNQVGGEQVDLDS 1192 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 DD ++ +A+ ++GVP+ T VFDGA E + +L +A +D GQ LYDG TG+ FDR Sbjct: 1193 LTDDDIMALADNLRAGVPMGTAVFDGAKESQVKDLLELAGMDRDGQQTLYDGRTGQKFDR 1252 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1253 KVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1312 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 Y LQEMLT+KSDDV GRTR+Y++IV G + G PESFNVL KE+++LG++I+L+ + Sbjct: 1313 TYTLQEMLTVKSDDVEGRTRMYKNIVDGEQYMDPGMPESFNVLTKEIKSLGINIELKQT 1371 >gi|21672328|ref|NP_660395.1| DNA-directed RNA polymerase subunit beta [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|730609|sp|P41184|RPOB_BUCAP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|296969|emb|CAA77970.1| beta subunit of RNA polymerase [Buchnera aphidicola] gi|21622929|gb|AAM67606.1| DNA-directed RNA polymerase beta chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|739393|prf||2003233A RNA polymerase:SUBUNIT=beta Length = 1342 Score = 1594 bits (4127), Expect = 0.0, Method: Composition-based stats. Identities = 696/1364 (51%), Positives = 971/1364 (71%), Gaps = 22/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ ++ GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFIKID----PEGLHGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++G + L++VSY FDV +C R TY+ PL++ LRL++++ D ++ Sbjct: 57 FPICGYNGNSELQYVSYRLGDAIFDVKECQIRGATYSAPLRVRLRLVIYERD--VLEPTV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTF+I G +R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTNNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+PVT L AL ++EEIL+ F+ K +++ Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPVTIILRALNYNTEEILNLFFEKNIFNINN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L + L G S + G+ ++ G+++T+ ++ LK+ + + + + Sbjct: 235 NKIQLELVSERL-RGETASFDIK--KNGKIYVKKGRRITAKHIQELKKDKINSITVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V+++ ++ +TGE I A + + L ++ +S I L+ + +++ YI TL Sbjct: 292 ILGRIVSKNYLDPKTGETIILANTELSLEILTKLKNSSFFSIETLFTNDLDHGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYRVMRPG+ T E++F LFF D+YDLS+VGR+K N L Sbjct: 352 RIDSSHDRISALMEIYRVMRPGEPLTKEATENLFENLFFSEDRYDLSSVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + V + KEDII +IK L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 KKIEGVSTLNKEDIIDVIKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +A+ EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSVGDLDTLMPQDMINAKPISAAIKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N+YGF+ETPY Sbjct: 532 ALGLGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNSYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV + VT+++ YLSA+EE N IAQAN+++D++ F ++LV CR GE L ++D Sbjct: 592 RKVHNRLVTDEIHYLSAIEEGNYVIAQANTNIDKNNYFIDDLVTCRHKGESSLFNCNQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP LK + P VGTGME VA Sbjct: 652 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLKTDKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR GI++ +DA RI+I+ E + +G+DIY L K+ RSNQNTC+NQ+P V Sbjct: 712 SGVTVVAKRGGIIQYIDASRIIIKVNEEETYTGEAGIDIYNLTKYTRSNQNTCINQKPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K+ +++ +ND++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SE++V ED FT+I Sbjct: 772 KLREKINKNDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSEKVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEI+ DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELSCISRDTKLGPEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV+IF R G+ K++R++ +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDGVKKDKRALEIENM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 Q++ +D +E I + +++SR+ + L N + D +++ P +W+ Sbjct: 952 QLKKAKKDLTEEFKIFELSLFSRIKKTLVSFN-------------IKEDFLNKLPYEKWF 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +QD ++ +E L Q+ K E + + K KI GDD+ PGVL++VKV++A+KR Sbjct: 999 KIDIQDRNKKKEIEKLLQQHNQLKKEFEKKIEVKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPVEDMPYDENGIPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI +++ + ++ + + D+ ++ +L +A+ K Sbjct: 1119 MAAKGIGNKINNMLKKQEKISNLKKFIQKAFDLGENLRQKVNLDDFSNEEILDLAKNLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P+STPVFDGA E I ML+ ++L SGQ L+DG TGE F+RPVTVGY+YMLKLNH+ Sbjct: 1179 GMPISTPVFDGAQENEIKQMLKFSNLPTSGQISLFDGRTGEKFERPVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LEN Sbjct: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELENE 1342 >gi|67459538|ref|YP_247162.1| DNA-directed RNA polymerase subunit beta [Rickettsia felis URRWXCal2] gi|75536057|sp|Q4UKD4|RPOB_RICFE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|67005071|gb|AAY61997.1| DNA-directed RNA polymerase beta chain [Rickettsia felis URRWXCal2] Length = 1373 Score = 1593 bits (4126), Expect = 0.0, Method: Composition-based stats. Identities = 765/1358 (56%), Positives = 1027/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNVLLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPASDEVLAKIGEMITSDMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AE++F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAENLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V D Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDR 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +D+DG E + CR G ++V +++DFID + Sbjct: 615 HVTDEVVYLSAIEEGKYKIGQANSKVDKDGKLQGEFINCRVEGGNFVMVEPQEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++E +D + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRTLEQKID-GSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII VGAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ V+GPK K ++S+++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLIGQVIVNGPKQVKAGQTITSEMLKGLSKGQFWQLTVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +KV Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKVHYDEKKDALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK I ++ FL ++ G I + ++ ++ + GV Sbjct: 1154 LAKKISTLVKEYKNKHIGIEQIKKFLLELYGENI--NYILERSEEEIISFCNKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|37912944|gb|AAR05276.1| DNA-directed RNA polymerase beta subunit [uncultured marine gamma proteobacterium EB000-45B06] gi|40063171|gb|AAR38008.1| DNA-directed RNA polymerase, beta subunit [uncultured marine bacterium 562] Length = 1353 Score = 1593 bits (4126), Expect = 0.0, Method: Composition-based stats. Identities = 712/1367 (52%), Positives = 982/1367 (71%), Gaps = 16/1367 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG +++D+P+LIE Q SY FL ++APD R +GL+ F+S+ Sbjct: 1 MSYSYTEKKRIRKNFGTFTKVMDLPNLIETQTKSYSEFLQADVAPDARKKQGLEDVFQSL 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A LE+VSYE +DV +CL + L+Y+ PL+I ++L+++D D T K + Sbjct: 61 FPIKSVSGNAALEYVSYELGKNTYDVQECLVQGLSYSAPLRIKVKLVLYDRD--TNFKEV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE ++MG++PLMT D +FV+ G +R+VV+QLHRSPG+ +DHDKG+ SGK+LY+ Sbjct: 119 KDIKEGEVFMGEVPLMTSDASFVVNGTERVVVAQLHRSPGVFYDHDKGKTHSSGKVLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI+ RIDRRRK+P T L AL M +EEILS FY + V+S Sbjct: 179 RIIPYRGSWLDFEFDPKDILFSRIDRRRKIPATIMLRALDMGTEEILSEFYDEDVFSLEK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G + + + +E+GK++T+ +K L V + + + Sbjct: 239 DSVKLALIPERL-RGETLPVDIKVK--SKVYVEAGKRITARHIKELSNANVSEITLAEEF 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +++DI N ETGE+ A ID + LE + + + DI L+++ ++ YI NTL Sbjct: 296 LIGKVLSKDIFNKETGEVLYSANTEIDNEVLEALKENNVSDITCLFINELDKGPYISNTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++FN LFF+ ++YDLS VGR+K N RL L Sbjct: 356 RADPTSNRLEALVEIYRMMRPGEPPTKDSAETLFNNLFFNEERYDLSEVGRMKFNRRLKL 415 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D ++ + KEDII ++K +V++R+G +DDID+LGNRRVRSVGEM NQ+R+GL+R Sbjct: 416 DSKKENDNILDKEDIIEVMKGIVNIRDGHDIVDDIDHLGNRRVRSVGEMTANQFRVGLIR 475 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER+++ER+S + D + PQDLINAKPV +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 476 VERAVRERLSMAEADELGPQDLINAKPVTAAIKEFFGSSQLSQFMDQNNPLSEITHKRRV 535 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S S++R N YGFIETP Sbjct: 536 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSFASYSRTNQYGFIETP 595 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV +G VT+++ YLSA++E IAQAN +LD++ F ++LV R A E L+ +++ Sbjct: 596 YRKVINGTVTDEITYLSAIDEAEHVIAQANVTLDKNNKFVDDLVAVRHASEFELMSSDRV 655 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D +D SP+QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP+L+AE P VGTG+ESVVA+ Sbjct: 656 DLMDVSPQQVVSIAASLIPFLEHDDANRALMGSNMQRQAVPVLRAEKPLVGTGLESVVAR 715 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG IVAK +G+VE VDA RIV+R + S S D+Y L+K+ RSNQNTC+NQRP+ Sbjct: 716 DSGVCIVAKNSGVVENVDASRIVVRVTDK---KSKSASDVYNLVKYTRSNQNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V+VGD V+ D++ADGPS D G+LALG+N+ +AFMPW+GYNFEDS+LISE++ ED FTS Sbjct: 773 VRVGDVVKSGDVLADGPSVDNGELALGQNIRIAFMPWNGYNFEDSILISEKVAREDRFTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +D+CGI+ VGAEV PGDILVGKITPK Sbjct: 833 IHIQEIVCVARDTKLGSEEITADIPNVGEGSLNKLDDCGIVYVGAEVEPGDILVGKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ ++PEEKLLRAIFGEKA DV+DTS R S GTV++V +F R G++K+ER+ ++E+ Sbjct: 893 GETQLSPEEKLLRAIFGEKASDVKDTSQR--SSAKGTVINVEVFTRDGVEKDERTQAIEQ 950 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 + ++ +D DDE ++++ +RL ++L G+ A+ G G KK LS + + E + Sbjct: 951 DHLDKSKKDADDEAFVVEQATKTRLCDLLKGKKAIKG-NGIKKGETLSLERLEELDLNDL 1009 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + + +E + Y++ ++ RF+ K KI G D+ PGV+++VKV++A+K Sbjct: 1010 FSIRTDTDTINDVIEDTEKSYKSYAKDIKARFEEKKAKIIRGHDLAPGVIKIVKVYLAIK 1069 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S I+P EDMP+ KDG PVDIVLNPLGVPSRMNVGQI ETH+ Sbjct: 1070 RRIQPGDKMAGRHGNKGVISEIMPVEDMPYDKDGQPVDIVLNPLGVPSRMNVGQILETHM 1129 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQW 1200 G A G+G+KI ++ K N + L+++L+K+ ++ E I+ +++ ++ +A Sbjct: 1130 GCAAKGIGQKIDLML---KENAKPAELKTYLDKLYNTNAANKEDINSFNNTEIMELAHNL 1186 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K G+P++TPVFDGA E + +L++ADL ESGQ LYDG TG FDRPVTVGY+Y++KLN Sbjct: 1187 KDGLPIATPVFDGAKESEVKDLLKLADLPESGQFTLYDGRTGSKFDRPVTVGYMYIIKLN 1246 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSD Sbjct: 1247 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSD 1306 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 DV GRT++Y++IV G+ + PESFNVL KE+++LG++++L++ Sbjct: 1307 DVSGRTKMYKNIVDGSYEMDANIPESFNVLSKEIKSLGINLELDSEN 1353 >gi|162448680|ref|YP_001611047.1| DNA-directed RNA polymerase [Sorangium cellulosum 'So ce 56'] gi|189043869|sp|A9GRB1|RPOB_SORC5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|161159262|emb|CAN90567.1| DNA-directed RNA polymerase [Sorangium cellulosum 'So ce 56'] Length = 1378 Score = 1593 bits (4125), Expect = 0.0, Method: Composition-based stats. Identities = 718/1365 (52%), Positives = 986/1365 (72%), Gaps = 25/1365 (1%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 RVRK G+ IID+P+LI++QK+SYD FL M++ P+ER GLQA F+SVFPI F+G Sbjct: 10 RVRKNLGRVRRIIDVPNLIDIQKSSYDKFLQMSVPPNEREEVGLQAVFRSVFPIKDFNGT 69 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 + L FVSY +PPK+DVD+C R +TY+ P+K+T +L+++D G + ++DIKEQ +Y Sbjct: 70 SELVFVSYNLEPPKYDVDECRQRGMTYSAPIKVTNQLMIYDT-RDGGERIVRDIKEQEVY 128 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 G+LPLMT+ GTF+I G +R+VVSQLHRSPG+ FDHDKG+ SGKLLY+ R+IP +G W Sbjct: 129 FGELPLMTETGTFIINGTERVVVSQLHRSPGVFFDHDKGKTHSSGKLLYSARVIPYRGSW 188 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 +D EFD KDII+VRIDRRRK+ T L ALG ++++L+ FY Sbjct: 189 LDFEFDPKDIIYVRIDRRRKMHATVLLRALGYSTQDLLNYFYSTETVYLEKGGKYAKSIE 248 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 DL+ G + + + + +++ K T ++ +KE ++ L + + L G A D Sbjct: 249 YDLLAGQRTTRDIKI--GNDVIVKKNTKFTRAAIRKMKEAKLERLSLEPEELVGKVAAHD 306 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 IV+ ETGE+ +E + + E LE + + I IL++D +N +Y+R+TL+TDK K + Sbjct: 307 IVDPETGEVVVEVNEELTEAKLERLRDANIEQFRILFIDGLNVGSYLRDTLLTDKVKTME 366 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR-- 429 D++L+IYR +RPGD T A+++F+ LFF++++YDLS VGR+K+N + D P+D R Sbjct: 367 DSILEIYRRLRPGDPPTLETAKTLFHNLFFNAERYDLSKVGRLKLNYKFYRDVPEDERPG 426 Query: 430 ----HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 + +DI+ ++ L++L+NG+G++DDID+LGNRRVR+VGE+++NQYR+GL+RMER+ Sbjct: 427 LDLTVLTPQDILETVRHLIELKNGRGSVDDIDHLGNRRVRAVGELMENQYRIGLVRMERA 486 Query: 486 IKERISS-VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSAL 544 IKER+S +ID++MP DLINAKPV + V E+F SSQLSQ + N LS +TH RRLSAL Sbjct: 487 IKERMSMSQEIDTLMPHDLINAKPVSAVVKEYFGSSQLSQFMDQTNPLSEVTHKRRLSAL 546 Query: 545 GQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604 G GG+ R RAG E+RDVH THYGRICP ET EG NIGL++SL++FARVN +GF+ETPYRK Sbjct: 547 GPGGLTRERAGFEVRDVHATHYGRICPIETPEGPNIGLIASLSTFARVNEFGFVETPYRK 606 Query: 605 VCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 V +G+VT DV++LSA+EEE +YIAQA +LDE G F E LV R GE +V E ++ + Sbjct: 607 VENGRVTEDVIWLSALEEEGKYIAQATVNLDEGGRFKESLVSARYNGEFKIVTPEMVELM 666 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D +P Q+VS+AA+L+PFLE+DD+NR LMG NMQRQAVPL+++ AP VGTGME +A+ SG Sbjct: 667 DVAPNQMVSVAAALVPFLEHDDANRALMGANMQRQAVPLVQSHAPLVGTGMEERLARDSG 726 Query: 725 AAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 ++A+R G+VE VDA RIV+R+ + DIY LMKFQRSNQ+TC Q+P+V+ Sbjct: 727 VCVIARRPGVVESVDATRIVVRAEGEGAEV----PDIYHLMKFQRSNQSTCYTQKPVVRT 782 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G+ V++ D++ADGPSTD+G+LALG+N+LVAFMPW GYNFEDS+L+SER+ +DVFTSIHI Sbjct: 783 GEVVKKGDVLADGPSTDMGELALGQNVLVAFMPWQGYNFEDSILVSERIAKDDVFTSIHI 842 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EEFE +ARDTKLG EEITRDIPNV EE LK++D+ GI+ +GAEV PGDILVGKITPKGE+ Sbjct: 843 EEFECVARDTKLGKEEITRDIPNVGEEALKDLDDSGIVRIGAEVRPGDILVGKITPKGET 902 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 ++PEEKLLRAIFGEKA DVRD+SL+VP GV G V++ R+F+R G +K++R+ +E ++ Sbjct: 903 QLSPEEKLLRAIFGEKAGDVRDSSLKVPPGVGGIVINARVFSRKGTEKDDRARDIEDQER 962 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS------GPKGFKKSTVLSSDLISEYPR 1018 + R +D+E IL + + R+ E+L G+ A G F+K ++ ++E PR Sbjct: 963 ARIERTRDEEIKILRDSFFRRIRELLLGKEATGKLVDDKGKVLFQKGAIIDEPSLAEIPR 1022 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 W + V D V+ + E E+ F++KI+++ GD++PPGV+++VKV++ Sbjct: 1023 KYWGEIPVDD---AERVQQILRDLEELVRTREEHFRDKIDRLSKGDELPPGVIKMVKVYI 1079 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR +Q GDKMAGRHGNKG++SRILP EDMP+L+DG PVD+VLNPLGVPSRMNVGQI E Sbjct: 1080 AIKRKLQVGDKMAGRHGNKGVISRILPEEDMPYLQDGRPVDLVLNPLGVPSRMNVGQILE 1139 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 HLGW LG +++ +I +A+ +I + G + + DD V R + Sbjct: 1140 IHLGWGAFELGNQLQRMIEQQRASAEIKEHLKAI--YAGDETMNGFFDNLDDGDVKRFVK 1197 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 GV + +PVFDGA E I L +A L SGQ+IL+DG TG+ FD+ VTVG +YMLK Sbjct: 1198 TVDEGVFMGSPVFDGAHESDIKGALDLAGLPTSGQAILFDGRTGDAFDQNVTVGIMYMLK 1257 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+K Sbjct: 1258 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVK 1317 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 SDDV+GRTR+YE+IV G+ T E G PESFNVL+KE+Q+L L+++L Sbjct: 1318 SDDVMGRTRMYEAIVKGDYTLEAGLPESFNVLIKELQSLCLNVEL 1362 >gi|93007001|ref|YP_581438.1| DNA-directed RNA polymerase subunit beta [Psychrobacter cryohalolentis K5] gi|122414836|sp|Q1Q8P9|RPOB_PSYCK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|92394679|gb|ABE75954.1| DNA-directed RNA polymerase, beta subunit [Psychrobacter cryohalolentis K5] Length = 1372 Score = 1593 bits (4124), Expect = 0.0, Method: Composition-based stats. Identities = 695/1380 (50%), Positives = 963/1380 (69%), Gaps = 23/1380 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F + P ++DIP L+ +Q SY+ FL + P R N GLQAA+ S+ Sbjct: 1 MAYSYTEKKRIRKSFAELPTVMDIPYLLSIQVDSYEQFLQEHKKPKARENTGLQAAYSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS- 121 FPI + SG A L+FV Y P+FD +C+ R T+A P+++ +RLI+ D D Sbjct: 61 FPIESHSGNAELQFVEYYLGTPEFDERECILRGSTFAAPMRVKIRLIIKDKDSKDKDSKA 120 Query: 122 -IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 IKDI+EQS+YMG++PLMT +GTF+I G +R++VSQLHRSPG+ FDHDKG++ SGK+LY Sbjct: 121 AIKDIREQSVYMGEMPLMTANGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 RIIP +G W+D EFD+KD++ RIDRRRK+ + L ALG+ + EIL F+ K+ + Sbjct: 181 NARIIPYRGSWLDFEFDAKDLVFARIDRRRKLLASIILRALGLSTSEILDLFFDKVRVYK 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + L A D + G +V G+ V+E GK++ + ++ L+E G+ + I Sbjct: 241 GEEQFEIDLVA-DRLRGEMAQFDIVTPA-GDVVVEQGKRINARRIRQLEEAGMTKISIPD 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSE----IRDIPILYVDSVNNNA 356 + L +AEDI+ E+ A +ID + L ++ E I++ IL+ + ++ + Sbjct: 299 EYLYERILAEDII--VNDEVIARANTLIDHELLVKLSAFEASESIKEFSILFTNDIDQGS 356 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 YI +TL D R++AL++IY+VMRPG+ T AE +F+ +FF++D+YDLS VGR+K Sbjct: 357 YIADTLRADSTSSREEALIEIYKVMRPGEPPTVETAEKLFDSMFFNADRYDLSNVGRMKF 416 Query: 417 NMRLNLDTPD--------DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 N RL LD D + + DI+ ++K L+++RNG+G +DDID+LGNRR+RSVG Sbjct: 417 NRRLGLDFVDTDDADIQRERSVLTNADIVNVLKELIEIRNGRGEVDDIDHLGNRRIRSVG 476 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 EM +NQ+R+GL+R+ER++KER+SS + D++ PQDLIN+KPV +AV EFF SSQLSQ + Sbjct: 477 EMAENQFRVGLVRVERAVKERLSSAESDNLSPQDLINSKPVAAAVKEFFGSSQLSQFMDQ 536 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 N LS +TH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL + Sbjct: 537 NNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHDTHYGRVCPIETPEGPNIGLINSLAT 596 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 FA+ N++GF+ETPYR+V DGKVT+ + YLSA+EE IAQA+S + DG+ ++E+V R Sbjct: 597 FAKTNSFGFLETPYRRVVDGKVTDVIEYLSAIEEVGTVIAQADSPVTADGALSDEMVSVR 656 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE + +P EK+ +D SP QVVS+AA LIPFLE+DD+NR LMG NMQRQAVP L+A+ Sbjct: 657 SYGEFVRMPPEKVTHMDVSPSQVVSVAAGLIPFLEHDDANRALMGSNMQRQAVPTLRADK 716 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME VA+ SG ++AKR G++E VDA R+V+R E ++ +G+DIY L+K+ Sbjct: 717 PLVGTGMERHVARDSGVCVIAKRGGVIEDVDASRVVVRVNEDEMIAGEAGIDIYNLVKYT 776 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQNTC+NQR +V GD + DI+ADGPSTDLG+LALG+N+ +AFMPW+GYNFEDS+L Sbjct: 777 RSNQNTCINQRIIVNQGDAIAVGDILADGPSTDLGELALGQNIRIAFMPWNGYNFEDSIL 836 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SE++V ED FT+IHI+E +ARDTKLG EEIT DIPNV E L ++DE GI+ +GAEV Sbjct: 837 LSEKVVKEDRFTTIHIQELTCVARDTKLGTEEITADIPNVGEAALSSLDEAGIVYIGAEV 896 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 + GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ GTV+DV++F R Sbjct: 897 DAGDILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDTSLRVPTSSKGTVIDVQVFTRD 956 Query: 949 GIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL 1008 G++K+ R+ ++E+ Q++ +D +E I + R+ +L GQ G G K TV+ Sbjct: 957 GVEKDARARAIEKSQLDSYRKDLKEELRIFEEAARGRIGNLLDGQKVSGGS-GLKAGTVM 1015 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPP 1068 + + + +E++ + + + ++ +F K K+ GDD+ Sbjct: 1016 ALADMKDMSLETLLDIQPVEEEISERLTQIAEYLVDKQKDIDVKFAEKKRKLTAGDDLQH 1075 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV ++VKV++A+KR IQ GDKMAGRHGNKG+VSRI+P EDMP+ ++G VDIVLNPLGVP Sbjct: 1076 GVQKIVKVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPVEDMPYDENGNTVDIVLNPLGVP 1135 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISD 1187 SRMN+GQ+ ETHLG A GLG+KI ++ K+ I LR FL+K+ G + Sbjct: 1136 SRMNIGQVLETHLGMAAKGLGEKIDGML---KSQAAIKDLRDFLDKIYNQVGGEQVDLDS 1192 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 DD ++ +A+ ++GVP+ T VFDGA E + +L +A +D GQ LYDG TG+ FDR Sbjct: 1193 LSDDDIMALADNLRAGVPMGTAVFDGARESQVKDLLELAGMDRDGQQTLYDGRTGQKFDR 1252 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1253 KVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1312 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 Y LQEMLT+KSDDV GRTR+Y++IV G + G PESFNVL KE+++LG++I+L+ S Sbjct: 1313 TYTLQEMLTVKSDDVEGRTRMYKNIVDGEQYMDPGMPESFNVLTKEIKSLGINIELKQSN 1372 >gi|161870923|ref|YP_001600103.1| DNA-directed RNA polymerase subunit beta [Neisseria meningitidis 053442] gi|161596476|gb|ABX74136.1| DNA-directed RNA polymerase beta chain [Neisseria meningitidis 053442] Length = 1371 Score = 1593 bits (4124), Expect = 0.0, Method: Composition-based stats. Identities = 691/1377 (50%), Positives = 950/1377 (68%), Gaps = 42/1377 (3%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 +++P L+ Q SY FL + A D+R ++GLQAAF S+FPI + +G A LEFV Y Sbjct: 1 MEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSIFPIVSHNGYARLEFVHYTLGE 60 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 P FD+ +C R +TYA PL+ +RL++ D ++K+++E +YMG++PLMT G+ Sbjct: 61 PLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTVKEVRENEVYMGEIPLMTPSGS 118 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ RIIP +G W+D EFD KD+++ Sbjct: 119 FVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDLLY 178 Query: 204 VRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 RIDRRRK+PVT L ALG ++E+IL FY K + + L A L G Sbjct: 179 FRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSSNGVQTDLVAGRL-KGETAKVD 237 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 ++D G ++ GK++T+ ++ + G+ L + + L G +A D+++ ETGE+ Sbjct: 238 ILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPESLLGKALAADLIDSETGEVLAS 296 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 A D I E+ L + + +++I LY++ ++ AYI NTL TD+ R+ A + IYR+MRP Sbjct: 297 ANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTLRTDETAGRQAARVAIYRMMRP 356 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR-------------- 429 G+ T E +FN LFF D YDLS VGR+K N R + + Sbjct: 357 GEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYEQKLSEAQQNSWYGRLLNETFA 416 Query: 430 --------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 + EDI+A I LV+LRNG G +DDID+LGNRRVRSVGE+ +NQ+R GL R Sbjct: 417 GAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLAR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER++ + +++MP DLINAKPV +A+ EFF SSQLSQ + N LS +TH RR+ Sbjct: 477 VERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRV 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP Sbjct: 537 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETP 596 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ +LV CR GE I+ +++ Sbjct: 597 YRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRV 656 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA Sbjct: 657 QYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAV 716 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 S AIVA+R G+VE VDA R+VIR + + GVDIY L+KF RSNQ+T +NQRP Sbjct: 717 DSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNLVKFTRSNQSTNINQRPA 776 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+GYN+EDS+LISE++ ++D +TS Sbjct: 777 VKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYEDSILISEKVAADDRYTS 836 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE V+ARDTKLG E+ITRDIPN+SE +DE GI+ +GAEV GD+LVGK+TPK Sbjct: 837 IHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYIGAEVEAGDVLVGKVTPK 896 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+DV++F R GI +++R+ S+ Sbjct: 897 GETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQVFTREGIQRDKRAQSIID 956 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP-RSQ 1020 +++ D +D+ I D + + R+ ++ GQ A GP K + ++++ ++ P R Sbjct: 957 SELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLAKGSEITTEYLAGLPSRHD 1016 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ + DE + + +E +KV + + ++ ++ K +K+ GD++ PGV ++VKVF+A+ Sbjct: 1017 WFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKKLTQGDELQPGVQKMVKVFIAI 1076 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVDIVLNPLGVPSRMN+GQI E H Sbjct: 1077 KRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPSRMNIGQILEVH 1136 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA G+G++I ++ + + G+ LR FL K+ E + D+ ++ +A Sbjct: 1137 LGWAAKGIGERIDRMLKEQRKAGE---LREFLNKLYNGSGKKEDLDALTDEEIIELASNL 1193 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMA-----------DLDES-GQSILYDGLTGEPFDRP 1248 + G ++PVFDGA E I ML +A ++S Q LYDG +GE FDR Sbjct: 1194 RKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGFNDSKTQITLYDGRSGEAFDRK 1253 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA Sbjct: 1254 VTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1313 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 Y LQEMLT+KSDDV GRT++YE+IV G + G PESFNVLVKE+++LGL IDLE Sbjct: 1314 YTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLVKEIRSLGLDIDLER 1370 >gi|89902356|ref|YP_524827.1| DNA-directed RNA polymerase subunit beta [Rhodoferax ferrireducens T118] gi|89347093|gb|ABD71296.1| DNA-directed RNA polymerase, beta subunit [Rhodoferax ferrireducens T118] Length = 1350 Score = 1593 bits (4124), Expect = 0.0, Method: Composition-based stats. Identities = 682/1354 (50%), Positives = 951/1354 (70%), Gaps = 18/1354 (1%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 ++IP L+++QK +Y FL ++ P +R EGLQAAF++ FPI + +G ++++ Y Sbjct: 2 LEIPYLLQMQKDAYTAFLQADVHPKKRTAEGLQAAFEAAFPIISHNGFVEMKYLEYNLAK 61 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AKSIKDIKEQSIYMGDLPLMTKDG 142 P FDV +C R LT+A ++ ++L ++D + T K IK++KEQ +YMG++PLMT G Sbjct: 62 PAFDVRECQTRGLTFASAVRAKVQLFIYDRESSTSQNKVIKEVKEQEVYMGEVPLMTTKG 121 Query: 143 TFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDII 202 +F+I G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ RIIP +G W+D EFD KD + Sbjct: 122 SFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDFL 181 Query: 203 HVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSS 262 + R+DRRRK+PVT L A+G++ E IL+ F+ + A L G Sbjct: 182 YFRVDRRRKMPVTILLKAIGLNHESILANFFVNDNFRLMDSGAQMEFVAERL-RGEVARF 240 Query: 263 SLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYI 322 + D +G+ ++ K++T+ + L++ G + + D L G VA +IV+ +TGEI Sbjct: 241 DITD-KSGKVIVAKEKRVTARHTRELEQSGTTHISVPEDFLLGRVVARNIVDTDTGEILA 299 Query: 323 EAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMR 382 +A + + E ++++ + ++D+P +Y + ++ AYI TL +D+ D A + IYR+MR Sbjct: 300 KANEELTEALIKKLRLAGVQDLPCIYTNELDQGAYISQTLRSDETVDEFAARVAIYRMMR 359 Query: 383 PGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKI 442 PG+ T +++F LF++ D YDLS VGR+K N ++ + EDI+A++KI Sbjct: 360 PGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKMGRPESTGPMVLTNEDILAVVKI 419 Query: 443 LVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQD 502 LVDLRNG+G +DDID+LGNRRVR VGE+ +NQYR GL R+E+++KER+ + + +MP D Sbjct: 420 LVDLRNGRGDVDDIDHLGNRRVRCVGELAENQYRTGLARIEKAVKERLGQAEQEPLMPHD 479 Query: 503 LINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVH 562 LIN+KP+ +A+ EFF +SQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVH Sbjct: 480 LINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVH 539 Query: 563 PTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEE 622 THYGR+CP ET EG NIGL++SL +AR+N YGFIETPYR+V DGKVT ++ YLSA+EE Sbjct: 540 VTHYGRVCPIETPEGPNIGLINSLALYARLNDYGFIETPYRRVVDGKVTMEIDYLSAIEE 599 Query: 623 ENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFL 682 IAQAN+ LD+DG T E++ R AGE I E++ ++D SP Q+VS+AASL+PFL Sbjct: 600 GKFVIAQANAVLDKDGKLTGEMISAREAGETIFAGPERVQYMDVSPAQIVSVAASLVPFL 659 Query: 683 ENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIR 742 E+DD+NR LMG NM RQAVP+L+ E P VGTG+E V A SG + A R G+V+ VDA R Sbjct: 660 EHDDANRALMGANMSRQAVPILRPEKPMVGTGIERVAAIDSGTVVTATRGGMVDYVDATR 719 Query: 743 IVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDL 802 +VIR + + GVDIY L+K+QRSNQNT ++QRP+VK GD + + D+IADG STDL Sbjct: 720 VVIRVNDDEAQAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKKGDMLAKGDVIADGASTDL 779 Query: 803 GDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEIT 862 G+LALG+NML+ FM W+GYNFEDS+LISER+V++D +TSIHIEE VMARDTKLG EEIT Sbjct: 780 GELALGQNMLIGFMTWNGYNFEDSILISERVVADDRYTSIHIEELVVMARDTKLGCEEIT 839 Query: 863 RDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAV 922 RDIPN+SE+ L +DE GII VGAEV PGD LVGK+TPKGE+ +TPEEKLLRAIFGEKA Sbjct: 840 RDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGETTLTPEEKLLRAIFGEKAS 899 Query: 923 DVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI 982 DV+DTSLRV G GTV+DV++F R GI ++ R+ + ++++ D +D+ +++ + Sbjct: 900 DVKDTSLRVDQGSQGTVIDVQVFTREGIVRDRRAQQIIDDELKRFRLDLNDQLRLVEADS 959 Query: 983 YSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQY 1042 + R+ ++L G+ A GP+ K T + ++ + W+ ++ V +ES+K Sbjct: 960 FDRIEKLLVGKVANGGPQKLAKGTTIDKAYLTSVEKHHWFDIRPAEDDVAAQLESIKNSM 1019 Query: 1043 ETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSR 1102 E ++ + F+ K +K+ GD++P GVL++VKV++A+KR +Q GDKMAGRHGNKG+VS+ Sbjct: 1020 EQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRHLQPGDKMAGRHGNKGVVSK 1079 Query: 1103 ILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKAN 1162 I+P EDMPF+ DGTP DIVLNPLGVPSRMN+GQ+ E HLGWA G+G++I ++ +A Sbjct: 1080 IVPVEDMPFMADGTPCDIVLNPLGVPSRMNIGQVLEVHLGWAAKGIGQRIGDML---QAE 1136 Query: 1163 GDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSM 1222 ++ LR FL+++ E ++ DD VL +A SGVP +TPVFDGA E I +M Sbjct: 1137 AKVAELRKFLDELYNGTGRKEDLAQLSDDEVLEMAGNLTSGVPFATPVFDGASEADIGAM 1196 Query: 1223 LRMADLDESG-----------QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 L++A E Q+ LYDG TG+PF+RP T+GY++ LKL+H+V DK++ARS Sbjct: 1197 LKLA-YPEDAIRQKGLTPARTQAYLYDGRTGDPFERPTTIGYMHYLKLHHLVDDKMHARS 1255 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT+VYES Sbjct: 1256 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRTKVYES 1315 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 IV G + E G PESFNVLVKE+++LG+ I+LE Sbjct: 1316 IVKGEHSIEAGMPESFNVLVKEIRSLGIDIELER 1349 >gi|157828055|ref|YP_001494297.1| DNA-directed RNA polymerase subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932752|ref|YP_001649541.1| DNA-directed RNA polymerase subunit beta [Rickettsia rickettsii str. Iowa] gi|166229304|sp|A8GQW4|RPOB_RICRS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|189043865|sp|B0BWA9|RPOB_RICRO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157800536|gb|ABV75789.1| DNA-directed RNA polymerase subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907839|gb|ABY72135.1| DNA-directed RNA polymerase beta chain [Rickettsia rickettsii str. Iowa] Length = 1373 Score = 1592 bits (4123), Expect = 0.0, Method: Composition-based stats. Identities = 760/1358 (55%), Positives = 1024/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NVANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNILLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPASDEVLAKIGEMITADMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAESLFYNLFFDTERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +++DG E + CR G ++V ++DFID + Sbjct: 615 CVTDEVVYLSAIEEGKYKIGQANSKINKDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII +GAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKF 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ ++GPK K ++++++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLKGLSKGQFWQITVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK I ++ FL ++ G I + ++ ++ ++ GV Sbjct: 1154 LAKKISTLVKEYKNKHIGIEQIKKFLIELYGENI--NSILERPEEEIIAFCKKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|14916699|sp|Q9RH43|RPOB_RICMA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|6652714|gb|AAF22431.1| RNA polymerase beta subunit [Rickettsia massiliae] Length = 1373 Score = 1592 bits (4122), Expect = 0.0, Method: Composition-based stats. Identities = 762/1358 (56%), Positives = 1025/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ +T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYITTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNILLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPTSDEVLAKIGEMITADMLNVINALKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD D+YDLS VGR+KMN RL L+ ++V Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAESLFYNLFFDVDRYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFNTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +++DG E + CR G ++V ++DFID + Sbjct: 615 CVTDEVVYLSAIEEGKYKIGQANSKVNKDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII +GAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ ++GPK K ++++++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLKGLSKGQFWQITVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK I ++ FL ++ G I + ++ ++ ++ GV Sbjct: 1154 LAKKISTLVKEYKNKHIGIEQIKKFLIELYGENI--NSILERPEEEIISFCKKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|157964206|ref|YP_001499030.1| DNA-directed RNA polymerase subunit beta [Rickettsia massiliae MTU5] gi|166991527|sp|A8F0P7|RPOB_RICM5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157843982|gb|ABV84483.1| DNA-directed RNA polymerase beta chain [Rickettsia massiliae MTU5] Length = 1373 Score = 1592 bits (4121), Expect = 0.0, Method: Composition-based stats. Identities = 761/1358 (56%), Positives = 1025/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ +T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYITTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNILLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPTSDEVLAKIGEMITADMLNVINALKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD ++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAESLFYNLFFDVERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFNTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +++DG E + CR G ++V ++DFID + Sbjct: 615 CVTDEVVYLSAIEEGKYKIGQANSKVNKDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII +GAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ ++GPK K ++++++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLKGLSKGQFWQITVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK I ++ FL ++ G I + ++ ++ ++ GV Sbjct: 1154 LAKKISTLVKEYKNKHIGIEQIKKFLIELYGENI--NSILERPEEEIISFCKKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|6652723|gb|AAF22437.1|AF076436_1 RNA polymerase beta subunit [Rickettsia sp. Bar29] Length = 1373 Score = 1592 bits (4121), Expect = 0.0, Method: Composition-based stats. Identities = 759/1358 (55%), Positives = 1026/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ +T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYITTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNILLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPASDEVLAKIGEMITADMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 D + AL DI+RV+RPG+ + AES+F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DHEAALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFNTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V +G Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKNG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +++DG E + CR G ++V ++DFID + Sbjct: 615 CVTDEVVYLSAIEEGKYKIGQANSKVNKDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII +GAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ ++GPK K ++++++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLKGLSKGQFWQITVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKTHYDKKKEALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK I ++ FL ++ G I + ++ ++ ++ GV Sbjct: 1154 LAKKISTLVKEYKNKHIGIEQIKKFLIELYGENI--NSILERSEEEIISFCKKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V++K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVNNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|319778778|ref|YP_004129691.1| DNA-directed RNA polymerase beta subunit [Taylorella equigenitalis MCE9] gi|317108802|gb|ADU91548.1| DNA-directed RNA polymerase beta subunit [Taylorella equigenitalis MCE9] Length = 1370 Score = 1591 bits (4120), Expect = 0.0, Method: Composition-based stats. Identities = 692/1375 (50%), Positives = 957/1375 (69%), Gaps = 15/1375 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K + D+P L+E Q SY FL ++ P +R + GLQAAF S+ Sbjct: 1 MPYSFTEKKRIRKNFAKRQVVQDVPYLLETQIQSYRSFLQKDLTPSKRADIGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G+A LEFVSY P+FDV +C R LTY L +RL + D ++ Sbjct: 61 FPIESNNGSARLEFVSYVLKEPQFDVKECQLRGLTYYSGLYAKVRLEILDR--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KE+ +YMGDLPLMT +G+F+I G +R++VSQLHRSPG+ F+HDKG+ S KLL++ Sbjct: 119 KEVKEEEVYMGDLPLMTDNGSFIINGTERVIVSQLHRSPGVFFEHDKGKNHSSNKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD ++ RIDRRRK+PVT L A+GM S+EIL TF+ Y Sbjct: 179 RVIPYRGSWLDFEFDHKDYLYFRIDRRRKMPVTILLKAIGMSSDEILGTFFEFSKYDLND 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L G +VD G +++ K++ S ++ + + L + D Sbjct: 239 DGAVLHFVPERL-KGEVARFDIVDKK-GNVIVQKDKRINSKNIRDIAAAKLTKLPVPDDY 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A+ I++ ETGE+ ++A I E L ++ S I++I LY + +++ AYI TL Sbjct: 297 LVGQTIAKTIIDEETGEVLVQANTEITESVLAQLRKSSIKEIETLYTNELDHGAYISATL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D+ D+ A IY++MRPG++ ES+FN +F++SD YDLSTVGR+K+N RL Sbjct: 357 AIDETLDQTAARKSIYKMMRPGELPADDAVESLFNRMFYNSDTYDLSTVGRMKVNRRLGR 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 ++ + EDI+ IK LVDLRNG+G IDDID+LGNRRVR VGE+ +NQ+R GL+R+ Sbjct: 417 NSDKGPTTLTNEDILDTIKTLVDLRNGRGEIDDIDHLGNRRVRCVGELAENQFRSGLVRV 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KE + + ++++P DLIN+KP+ SA+ EFF S+QLSQ + N LS ITH RR+S Sbjct: 477 ERAVKEHLGHAESENLLPNDLINSKPISSAIKEFFSSNQLSQFMDQTNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALGQGG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +AR N YGF+ETPY Sbjct: 537 ALGQGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARQNEYGFLETPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +GKV + + YLSA+EE IAQAN++LDE G+F ++L+ CR AGE +L+ EK++ Sbjct: 597 RKVENGKVVDQIDYLSAIEESKYVIAQANANLDEHGNFIDDLIACRQAGETMLMSPEKVE 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +ID +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ + P VGTG+E VA Sbjct: 657 YIDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPQKPLVGTGIERTVAVD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A+R G V+ VD+ RIVIR + + + GVDIY L K+ RSNQNT +NQRP+V Sbjct: 717 SGTTVQARRGGEVDYVDSERIVIRVNDDESVSGSVGVDIYNLNKYTRSNQNTNINQRPIV 776 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V+R D+IADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISE++++ D +TS+ Sbjct: 777 KKGDVVQRGDVIADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVIANDRYTSV 836 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE V+AR+T+LG EEITRDIPN++ E L +DE GI+ +GAEV D+LVGK+TPKG Sbjct: 837 HIEELSVVARETQLGDEEITRDIPNLAAEQLNRLDESGIVHIGAEVRARDVLVGKVTPKG 896 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +PE KLLR IF +KA+DV+DTSLRVPSG+ GTV+DV++ +++++R+ S+ E Sbjct: 897 ETQQSPETKLLREIFQDKALDVKDTSLRVPSGMVGTVIDVQVLTGKRVERDKRAQSIIEE 956 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ +D D + I+++++++RL ++L G+ GP K + ++ + + P W+ Sbjct: 957 ELRRYRQDLDSQLRIVEKDMFNRLRKVLVGKKVNGGPISLSKGSSITEEYLKNLPTWDWF 1016 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 DE V +E K E + + +F+ K +K+ GD++PPGV ++VKVF+A+KR Sbjct: 1017 DIRPVDEDVAIVLEQAKDSIEKKRHEFDIKFEEKQKKLTQGDELPPGVRKMVKVFLAVKR 1076 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG+VSRILP EDMP + DGTP DIVLNPLGVPSRMNVGQ+ E HLG Sbjct: 1077 RLQPGDKMAGRHGNKGVVSRILPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLG 1136 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA G+G++I ++ D + S +R +LEKV TE + ++ D+ ++ +A K Sbjct: 1137 WAAKGIGQRIADMLADERKI-QASEIRKYLEKVYNRTGKTEDLKEFTDEQIIEMAHNLKD 1195 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADL----------DESGQSILYDGLTGEPFDRPVTVG 1252 G+P +TPVFDGA EE IN ML +A D Q+ L DG TGEPF+RPVT+G Sbjct: 1196 GIPFATPVFDGATEEEINDMLELAYPDDIKEKLHLTDSRTQAYLIDGRTGEPFERPVTIG 1255 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y++ LKL+H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQ Sbjct: 1256 YMHYLKLHHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQ 1315 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 EMLT KSDD+ GR V +I+ G+ + G PESFNV+VKE+++LGL ++LE + Sbjct: 1316 EMLTEKSDDMEGRNNVNRNIIQGDHVIDAGMPESFNVIVKEIRSLGLDMELEGKQ 1370 >gi|325267351|ref|ZP_08134012.1| DNA-directed RNA polymerase subunit beta [Kingella denitrificans ATCC 33394] gi|324981146|gb|EGC16797.1| DNA-directed RNA polymerase subunit beta [Kingella denitrificans ATCC 33394] Length = 1400 Score = 1591 bits (4120), Expect = 0.0, Method: Composition-based stats. Identities = 699/1405 (49%), Positives = 964/1405 (68%), Gaps = 46/1405 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K I+++P L+ Q SYD FL + A D+R +EGLQAAF S+ Sbjct: 1 MNYTFTEKKRIRKSFAKRETILEVPYLLTTQLESYDKFLQQDRAADKRVDEGLQAAFGSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVD--EFTGAK 120 FPI + +G A L+F Y P+FD+ +C R +TYA PL+ ++L++F+ + + Sbjct: 61 FPIVSNNGYAELQFEQYILGEPEFDIPECQLRGITYAAPLRAKIKLVIFNKEGSSKVEDR 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +K+I+E ++YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL+ Sbjct: 121 EVKEIRENTVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHASGKLLF 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG E+L+ FY Y Sbjct: 181 SARIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLRALGYSDSEMLNMFYDCETYYL 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 D L D + G +VD D G ++ +GK++ +++ +++ G+ L I + Sbjct: 241 GKDGVQTDLVV-DRLRGETAKFDIVDND-GNVLVSAGKQINGKVIREIQKAGLTRLTIDA 298 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G +A DI+ +TGE+ A I E+ L E+ E+++I L+++ + Y+ Sbjct: 299 EILLGKTLANDIIVPDTGEVLAAANSEITEELLAELDIQEVKEIKTLFINDTDAGNYLSA 358 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL TD+ +D++ A + IYR+MRPG+ T E++FN +FF + YDLS VGR+K N R Sbjct: 359 TLRTDETRDKQAARIAIYRMMRPGEPPTDEAVEALFNRMFFQEESYDLSRVGRMKFNTRT 418 Query: 421 NL------------------------DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 + + + EDI+ I LV+LRNG G +DDI Sbjct: 419 YEQKLLPAQENNWYGRLLNETFAGVGEKEAKLHILSVEDIVMTIATLVELRNGHGEVDDI 478 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEF 516 D+LGNRRVRSVGE+++NQ+R GL R+ER++KER++ + + +MP DLINAKPV +A+ EF Sbjct: 479 DHLGNRRVRSVGELVENQFRAGLARVERAVKERLNQAESEGLMPTDLINAKPVSAAIKEF 538 Query: 517 FCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSE 576 F SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET E Sbjct: 539 FGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 598 Query: 577 GHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDE 636 G NIGL++SL+ +AR N YGF+ETPYR+V DGKVTN++ YLSA+EE IAQANS +DE Sbjct: 599 GPNIGLINSLSVYARTNDYGFLETPYRRVVDGKVTNEIDYLSAIEEGRYVIAQANSEIDE 658 Query: 637 D-GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCN 695 G +EL+ CR GE IL +++ ++D + QVVS+AASLIPFLE+DD+NR LMG N Sbjct: 659 KTGKLKDELITCREKGETILATADRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGAN 718 Query: 696 MQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPS 755 MQRQAVP L+AE P VGTG+E VA S AIVA+R G+VE VDA R+V+R + + + Sbjct: 719 MQRQAVPCLRAEKPLVGTGIERAVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEATAA 778 Query: 756 TSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAF 815 GVDIY L+KF RSNQ+T +NQRP V GD ++R D+IADG STDLG+LALG+NM +AF Sbjct: 779 EGGVDIYNLVKFTRSNQSTNINQRPAVNKGDVLQRGDLIADGASTDLGELALGQNMTIAF 838 Query: 816 MPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKN 875 MPW+GYN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE+ Sbjct: 839 MPWNGYNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSEKMQNR 898 Query: 876 IDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGV 935 +DE GII +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+ Sbjct: 899 LDESGIIYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGM 958 Query: 936 SGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNA 995 SGTV+DV++F R GI +++R+ S+ ++ +D +D+ I D + + R+ +L GQ A Sbjct: 959 SGTVIDVQVFTREGIQRDKRAQSIIDAELRRYRQDLNDQVRIFDNDAFDRIERMLVGQKA 1018 Query: 996 VSGPKGFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 GP K ++++ + P R W+ V DE + + +E +K+ + + E F+ Sbjct: 1019 NGGPMKLGKGKAITAEYLHGLPSRHDWFDIRVADEDIAKQLELIKLSLQQKREEAEAAFE 1078 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 K +K+ GD++PPGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ D Sbjct: 1079 VKKKKMTQGDELPPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMAD 1138 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 G VDIVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + + +R FL + Sbjct: 1139 GRTVDIVLNPLGVPSRMNIGQILEVHLGWAAKGIGQRIDKMLAEQR---KVKEIRKFLNE 1195 Query: 1175 VIGTG-SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES-- 1231 + +H E + DD +L +A+ + G ++PVFDGA E+ I ML +A Sbjct: 1196 LYNKNAAHKEDLDSLSDDEILLLADNLRKGATFASPVFDGAKEKEIYDMLELAYPSNDPD 1255 Query: 1232 ----G------QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQ 1281 G Q LYDG +GEPFDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQ Sbjct: 1256 VQKLGFNDTKTQITLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQ 1315 Query: 1282 PLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFET 1341 PLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + Sbjct: 1316 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMYENIVKGEHKIDA 1375 Query: 1342 GTPESFNVLVKEMQALGLSIDLENS 1366 G PESFNV+VKE+++LGL IDLE + Sbjct: 1376 GMPESFNVIVKEIRSLGLDIDLEQN 1400 >gi|71892326|ref|YP_278060.1| DNA-directed RNA polymerase subunit beta [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|88909123|sp|Q492B9|RPOB_BLOPB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|71796432|gb|AAZ41183.1| DNA-directed RNA polymerase, beta-subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 1341 Score = 1590 bits (4118), Expect = 0.0, Method: Composition-based stats. Identities = 691/1363 (50%), Positives = 951/1363 (69%), Gaps = 22/1363 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQIDSFQKFIKQDPEEPC----GLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G A L+++ Y+ P FDV +C R T++ PL++ L LI+++ I Sbjct: 57 FPIKSYNGNAELQYIKYQLGEPTFDVKECQTRGATFSAPLRVRLCLIIYER--EGLNNII 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+ KEQ +YMG++PLMT +GTF+I GI+R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KNTKEQEVYMGEIPLMTNNGTFIINGIERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+PVT L AL +++IL+ F+ K++Y + Sbjct: 175 RIIPYRGSWLDFEFDLKDNLFVRIDRRRKLPVTVILRALNYTTDQILNIFFNKVIYEIQN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G ++ G+++ + ++ LK+ + + + D Sbjct: 235 NTLYMHLIPERL-RGETASFDI--AVNGVIYVKKGRRIAAKHIRQLKKDKISKIEVPMDY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V +D + T + A I L + S I L+ + ++ YI TL Sbjct: 292 IIGKVVIKDYFDKNTNIPIVTANTEISSDILHNLIRSGYESIETLFSNDLDYGNYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ DAL++IYRVMRPG+ T AE +F LFF ++YDLS+VGR+K N L Sbjct: 352 RIDATTNKFDALVEIYRVMRPGEPPTKEAAEYLFENLFFSEERYDLSSVGRMKFNRSLQR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 +D+ ++K+DI+ +IK L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 VQIEDLGTLKKDDIVDVIKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D + PQDLINAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDVLTPQDLINAKPISAAVREFFTSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARANKYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +G V+ND+ YLSA+EE + IAQAN++L+ G F ++LV CR GE L ++++D Sbjct: 592 RKVQNGVVSNDIHYLSAIEEGDFVIAQANTNLNSIGEFIDDLVTCRNKGESGLFKKDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP+L +E P VGTGME VA Sbjct: 652 YMDVSTQQIVSVAASLIPFLEHDDANRALMGANMQRQAVPVLCSEKPLVGTGMERAVAID 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+++ VDA RIVI + + SG+DIY+L K+ RSNQNTC+NQRP V Sbjct: 712 SGVTVVAKRGGVIKYVDASRIVIHVNKNETHTEESGIDIYQLTKYIRSNQNTCINQRPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V D+IADGPSTDLG+LALG+NM +AFMPW+GYNFEDSML+SER+V ED FTSI Sbjct: 772 SLGELVEHGDVIADGPSTDLGELALGQNMRIAFMPWNGYNFEDSMLVSERVVQEDKFTSI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GII +GAEV GDILVGK+TPKG Sbjct: 832 HIQELTCVSRDTKLGPEEITADIPNVGETALSKLDESGIIYIGAEVIGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GV GTV+DV+IF R GI+K++RS+ +E E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVCGTVIDVQIFTRDGINKDKRSLIIESE 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +++ + +D +E I + ++ R+ ++L ++ + + E R+ W Sbjct: 952 KLKQVKKDLSEELQIFESALFDRVCDVLM-------------TSGIDKKKLFETSRNAWL 998 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D + Q + L QY K + E + + + KI GD++ PG+L++VKV++A+KR Sbjct: 999 DLVLSDPEKQYQLSQLTKQYFDLKRMFEKKLEIQHRKITQGDELAPGILKIVKVYLAVKR 1058 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1059 QIQPGDKMAGRHGNKGVISKINPIEDMPYDQHGIPVDIVLNPLGVPSRMNIGQILETHLG 1118 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G KI ++ +K + + ++ + D +L++A+ K Sbjct: 1119 MAAKGIGDKINFMLQQHKEANQLRRFMQQAYNLGEGSRQHINLNSFSDIEILKLAKNLKK 1178 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L+++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1179 GMPIATPVFDGATEKEIKDLLKLSGLPSSGQITLFDGCTGEAFERQVTVGYMYMLKLNHL 1238 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDV 1298 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 GRT++Y++IV GN E G PESFNVL+KE+++L ++I+LE+ Sbjct: 1299 NGRTKMYKNIVDGNHMMEPGMPESFNVLLKEIRSLAINIELED 1341 >gi|15604016|ref|NP_220531.1| DNA-directed RNA polymerase subunit beta [Rickettsia prowazekii str. Madrid E] gi|6094124|sp|O52271|RPOB_RICPR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|2746230|gb|AAC38354.1| RNA polymerase beta subunit [Rickettsia prowazekii] gi|3860707|emb|CAA14608.1| DNA-DIRECTED RNA POLYMERASE BETA CHAIN (rpoB) [Rickettsia prowazekii] gi|292571735|gb|ADE29650.1| DNA-directed RNA polymerase beta chain [Rickettsia prowazekii Rp22] Length = 1374 Score = 1590 bits (4118), Expect = 0.0, Method: Composition-based stats. Identities = 767/1363 (56%), Positives = 1029/1363 (75%), Gaps = 9/1363 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DVD+C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVDECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D EFD+KDII+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDFEFDAKDIIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYYNSVTYKFVKNKGWSVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L + G+ + +T + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNVLLKAGQKITPRLAQKYFGVGLNNILVTHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L+ I +I+++ +L ++ + +YIRNTL DKN+ Sbjct: 316 SEDLRDPASDEVLAKIGEMITSDMLKVINDLKIKNVNVLVINPQ-SGSYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I++ILV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRILVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V +G Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKNG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +D+DG E + CR G ++V +++DFID + Sbjct: 615 YVTDEVVYLSAIEEGKYKIGQANSKVDQDGKLQGEFINCRVEGGNFVMVEPDEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K EAPFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTEAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVE+VD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVERVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII VGAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VRIF+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRIFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L G ++GPK ++++++ + Q WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGHVIINGPKQITAGQTITTEMLKGLSKGQLWQITVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K+ Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKIHYDEKKYALDKRFTTKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK N DI ++ FL ++ G I + ++ ++ + GV Sbjct: 1154 LAKKISTLVKEYKDNHIDIEEIKKFLLELYGKDI--NYILEGSEEEIISFCNKVSKGVYF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML +A D SGQ L DG TGE FDR VTVG+ Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLELAGQDLSGQVKLIDGRTGEYFDRLVTVGHKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE + +K Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTPSK 1374 >gi|149922217|ref|ZP_01910655.1| DNA-directed RNA polymerase subunit beta [Plesiocystis pacifica SIR-1] gi|149816957|gb|EDM76442.1| DNA-directed RNA polymerase subunit beta [Plesiocystis pacifica SIR-1] Length = 1384 Score = 1588 bits (4113), Expect = 0.0, Method: Composition-based stats. Identities = 729/1368 (53%), Positives = 983/1368 (71%), Gaps = 15/1368 (1%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 RVRK FGK +II++P+LI++QK SYD L ++ DER GLQA F SVFPI F Sbjct: 9 RVRKNFGKLKKIIEVPNLIDIQKRSYDKLLQADVPADEREMVGLQAVFSSVFPIKDFGET 68 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 + LEFVSY D PK+DVD+C R +T+A P+K+ +RL+V+DVD+ TG +SI+D+KEQ +Y Sbjct: 69 SSLEFVSYSLDRPKYDVDECRARGMTFAAPIKVVVRLVVWDVDDETGTQSIRDVKEQEVY 128 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 G++PLMT+ GTF+I G +R+VVSQLHRSPG+ F+HD+G+ SGK L++ R+IP +G W Sbjct: 129 FGEIPLMTQHGTFIINGTERVVVSQLHRSPGVFFNHDRGKTHSSGKKLFSARVIPYRGSW 188 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 +D EFD KD ++VRIDRRRK+ + L ALG ++E+L +Y K R D Sbjct: 189 LDFEFDHKDFVYVRIDRRRKLHASVILRALGYSTQELLDYYYDKETIHLR-DGKISREVD 247 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 DL+ G + + + D ++G+ +++ GKKL L+K ++ G+ + + + L G AED Sbjct: 248 YDLIAGQRSTQEIRDPESGQVLVKKGKKLNKVLIKRMRNAGISEIPLEPEELIGKVAAED 307 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 + + +TGE+ + D + E L I + I IL++D N +++R+TL+ DK + Sbjct: 308 VFDEDTGEVLLNCNDEVTEDVLANIVEAGIDSFRILFIDDFNVGSFLRDTLIADKLTSSE 367 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 DA+++IYR +RPGD T A ++F LFF SD+YDLSTVGR+K+N + +D P + + + Sbjct: 368 DAIMEIYRRLRPGDPPTIDTARNLFESLFFRSDRYDLSTVGRLKLNHKFGIDEPLETKVL 427 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K DI+ ++ LV+LRNG+G IDDID+LGNRRVR+VGE+++NQYR+GL+RMER+IKER+S Sbjct: 428 TKRDILETVRYLVELRNGRGKIDDIDHLGNRRVRAVGELMENQYRIGLVRMERAIKERMS 487 Query: 492 S-VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 ++D++MP DLINAKPV + V E+F SSQLSQ + N LS +TH RRLSALG GG+ Sbjct: 488 MSQEMDALMPADLINAKPVSAVVKEYFASSQLSQFMDQTNPLSEVTHKRRLSALGPGGLT 547 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGRICP ET EG NIGL++SL+++AR+N +GFIETPYR V GK Sbjct: 548 RERAGFEVRDVHATHYGRICPIETPEGPNIGLIASLSTYARINEFGFIETPYRTVEGGKA 607 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 T++V Y SA++E+ YIAQANS +D G F E V CR E +V ++ +D SP Q Sbjct: 608 TSEVAYYSALQEQGHYIAQANSQMDAAGKFIGETVQCRHNEEFEMVSPAEVTLMDVSPNQ 667 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 +VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ +AP VGTG+E+ VA+ SG+ +VA Sbjct: 668 LVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRTDAPLVGTGIETNVARDSGSTVVAH 727 Query: 731 RAGIVEQVDAIRIVIRSVEGDLDPS----TSGVDIYRLMKFQRSNQNTCVNQRPLVKVGD 786 R GIVEQVD RIV++ V G + + DIY L+KF+RSNQNT +NQ+P+V VGD Sbjct: 728 RDGIVEQVDGGRIVVKPVSGRGEEDRSILGAKPDIYNLVKFRRSNQNTALNQKPIVNVGD 787 Query: 787 EVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEE 846 V+ D+IADG +T+ G+LALG+N+LVAFMPW GYNFEDS+L+SER++ EDV+T+IHIEE Sbjct: 788 RVKSGDVIADGAATERGELALGQNLLVAFMPWQGYNFEDSILVSERLIREDVYTTIHIEE 847 Query: 847 FEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPM 906 FE +ARDTKLG EEITRDIPNV EE LKN+D+ GI+ +GAEV+ GDILVGKITPKGE+ + Sbjct: 848 FECVARDTKLGKEEITRDIPNVGEEALKNLDDAGIVRIGAEVHAGDILVGKITPKGETQL 907 Query: 907 TPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 +PEEKLLRAIFGEKA DVRDTSLR+P GVSG ++D R+F R G+DK+ R+ +E + E Sbjct: 908 SPEEKLLRAIFGEKAGDVRDTSLRLPPGVSGIIIDARVFARKGVDKDVRAQQIEDAERER 967 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQ------NAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 L++D D I+ ++R+ EIL G+ G + L++ L+ PR Sbjct: 968 LSQDHHDNVAIVSAGYHNRIKEILLGKTTAAKLVDDQGAMLVDANVQLTAALVDAAPRKY 1027 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W QF++ + +E+L + E +E ++ K+ K+ GD++PPGV+++VKV+VA+ Sbjct: 1028 WSQFSLTTAEDTELIEALGRRLEKDLDEIETIYREKLAKLTKGDELPPGVIKMVKVYVAI 1087 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG++SRILP ED+P+L+DGTPVDIVLNPLGVPSRMNVGQI E H Sbjct: 1088 KRKLQVGDKMAGRHGNKGVISRILPTEDLPYLEDGTPVDIVLNPLGVPSRMNVGQILEVH 1147 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA LG +I + + + N LR+ L+K+ T I DD V+R A++ Sbjct: 1148 LGWAARELGNQINAYM---ETNYSAEVLRAQLKKIYETEEAMRFIEQLPDDDVIRFADKV 1204 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + G+ V+TPVFDGA E + L+ A L +SGQ+IL+DG TGE F+ VTVG +YMLKL+ Sbjct: 1205 RRGIHVATPVFDGAHESEVKGFLQKAGLPDSGQAILFDGRTGEAFEEDVTVGIMYMLKLH 1264 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE+LT+KSD Sbjct: 1265 HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYALQELLTVKSD 1324 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 DVVGR R+YESIV G T + G PESFNVL+KE+QAL L ++L N Sbjct: 1325 DVVGRMRMYESIVKGQPTMQPGVPESFNVLLKELQALCLDVELINVED 1372 >gi|15892104|ref|NP_359818.1| DNA-directed RNA polymerase subunit beta [Rickettsia conorii str. Malish 7] gi|14916698|sp|Q9RH41|RPOB_RICCN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|6652717|gb|AAF22433.1|AF076434_1 RNA polymerase beta subunit [Rickettsia conorii] gi|15619229|gb|AAL02719.1| DNA-directed RNA polymerase beta chain [Rickettsia conorii str. Malish 7] Length = 1373 Score = 1588 bits (4112), Expect = 0.0, Method: Composition-based stats. Identities = 760/1358 (55%), Positives = 1024/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYTTTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNILLKAGQKITPRLAKKYSGEGLNNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPASDEVLAKIGEMITADMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAESLFYNLFFDTERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +++DG E + CR G ++V ++DFID + Sbjct: 615 CVTDEVVYLSAIEEGKYKIGQANSKINKDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII +GAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKF 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ ++GPK K ++++++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLKGLSKGQFWQIIVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK I ++ FL ++ G I + ++ ++ ++ GV Sbjct: 1154 LAKKISTLVKEYKNKHIGIEQIKKFLIELYGENI--NSILERPEEEIISFCKKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|229586379|ref|YP_002844880.1| DNA-directed RNA polymerase subunit beta [Rickettsia africae ESF-5] gi|259494191|sp|C3PMH7|RPOB_RICAE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|228021429|gb|ACP53137.1| DNA-directed RNA polymerase beta chain [Rickettsia africae ESF-5] Length = 1373 Score = 1588 bits (4111), Expect = 0.0, Method: Composition-based stats. Identities = 759/1358 (55%), Positives = 1023/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYTTTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNILLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPANDEVLAKIGEMITADMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAESLFYNLFFDTERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +++DG E + CR G ++V ++DFID + Sbjct: 615 CVTDEVVYLSAIEEGKYKIGQANSKINKDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E +VAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGIVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII +GAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKF 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ ++GPK K ++++++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLKGLSKGQFWQIIVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK I ++ FL ++ G I + ++ ++ ++ GV Sbjct: 1154 LAKKISTLVKEYKNKHIGIEQIKKFLIELYGENI--NSILERPEEEIISFCKKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|262277088|ref|ZP_06054881.1| DNA-directed RNA polymerase, beta subunit [alpha proteobacterium HIMB114] gi|262224191|gb|EEY74650.1| DNA-directed RNA polymerase, beta subunit [alpha proteobacterium HIMB114] Length = 1358 Score = 1587 bits (4110), Expect = 0.0, Method: Composition-based stats. Identities = 764/1362 (56%), Positives = 1010/1362 (74%), Gaps = 6/1362 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + F ++RK FGK I++IPDLIEVQK SYD FL N E GL+ FK V Sbjct: 1 MELSFTDKKKIRKSFGKLENIVNIPDLIEVQKKSYDSFLHFN----EDNKSGLEKVFKEV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+G A +E+VSY F+ K+DV++C R LTY+ PLK TLRL+ +DV+E K I Sbjct: 57 FPIEDFAGLATIEYVSYRFEKEKYDVEECKQRGLTYSAPLKATLRLVAYDVNEEEQTKQI 116 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KEQ +YMGDLPLMT GTFV+ GI+R+VV+Q+HRSPGI DHDKG+ SGKLL+ C Sbjct: 117 LSAKEQEVYMGDLPLMTPRGTFVVNGIERVVVNQMHRSPGIFLDHDKGKGHSSGKLLFNC 176 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D E+D KDI++ RIDR++K+P T+ LMALG +E+L+ F+ KI + Sbjct: 177 RVIPYRGSWLDFEYDIKDILYFRIDRKKKIPSTTLLMALGYPRDELLNLFHEKIKFDFVD 236 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 K+ LV+ D ++V++ G K+ + L+++G+K + + + Sbjct: 237 KDKLKTKFIPQRYKNYKLKHDLVNADDKKKVLKEGTKVNIPIAMKLQKEGLKNIFASLEE 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y A+DI N +TGE+Y E+GD + E+SLE++ I+ + +D +N +Y+RNTL Sbjct: 297 VHGRYFADDIFNEKTGEVYFESGDEVTEESLEKLKALNIKSFYLSEIDGLNIGSYLRNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 + DKN +A++DIYR++RPG+ T + ++FN LFF++ +YDLS VGRVK+N RL+L Sbjct: 357 IVDKNNTADEAVMDIYRILRPGEPPTLETSRNLFNNLFFNNTRYDLSDVGRVKLNSRLDL 416 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + +RKEDI+ I + ++ L++GK +DDID+LGNRRVRSVGE+++NQ+R+GL+RM Sbjct: 417 DCDPKITVLRKEDILKIAETMLRLKDGKEEVDDIDHLGNRRVRSVGELVENQFRIGLVRM 476 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKE++SSV+ID+VMPQDLIN+KP+ +++ EF+ +SQLSQ + N LS ITH RR+S Sbjct: 477 ERAIKEKMSSVEIDTVMPQDLINSKPIAASLKEFYGTSQLSQFMDQTNPLSEITHKRRVS 536 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +++RVN YGFIE+PY Sbjct: 537 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYSRVNKYGFIESPY 596 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +GKVT ++ YLSAMEE +AQANS L+ +G+F +ELV CR L E ID Sbjct: 597 RSVKNGKVTKEIHYLSAMEEGRYTVAQANSVLNTNGTFKDELVSCRRNLGFELAKPENID 656 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 F+D SPKQVVS+A++LIPFLENDD+NR LMG NM RQAVPL+K E+P VGTG+E VA Sbjct: 657 FMDVSPKQVVSVASALIPFLENDDANRALMGSNMMRQAVPLIKNESPLVGTGIEKDVALD 716 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA I+AKR G+VE++D RIV+++ D + SGVDIY L+KFQRSNQNTC+NQRPLV Sbjct: 717 SGATIIAKRDGVVEKIDGKRIVVKATSD-KDLTKSGVDIYNLLKFQRSNQNTCINQRPLV 775 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD +++ D+IADGPST LG+LALG+N+ VAFMPW GYNFEDS+LISER VS+DVFTSI Sbjct: 776 KVGDVIKKGDVIADGPSTQLGELALGKNVTVAFMPWLGYNFEDSILISERCVSDDVFTSI 835 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE+EVMARDTKLGPEEITRDIPN SEE L+N+DE GI+ VGAEV PGDILVGK+TPKG Sbjct: 836 HIEEYEVMARDTKLGPEEITRDIPNTSEEALRNLDESGIVYVGAEVKPGDILVGKLTPKG 895 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ++ ++ EEKLLR+IFGEKA DVRDTSL++PSG GTVV+VR+FNRHGI+K+ER++S+E+ Sbjct: 896 DTKVSSEEKLLRSIFGEKATDVRDTSLKMPSGTGGTVVEVRVFNRHGIEKDERALSIEKS 955 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 +IE + DK E+ IL+ NI R +IL + + F K + LS D + S + Sbjct: 956 EIEAVMSDKQAEESILELNIKIRAQQILSKTSLTEDYRAFSKGSKLSDDEVRTLSLSDIF 1015 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + + D K ++ +LK QY +K ++ RF++K++KI+ GD++ PGV+++VKVFVAMKR Sbjct: 1016 KLKLDDAKSNEDLFALKEQYNKAKKDIQSRFEDKVDKIERGDELLPGVMKMVKVFVAMKR 1075 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 +Q GDKMAGRHGNKG++SRI+P EDMP++ +G PVD+ LNPLGVPSRMNVGQI ETHLG Sbjct: 1076 KLQPGDKMAGRHGNKGVISRIVPVEDMPYMANGKPVDVCLNPLGVPSRMNVGQILETHLG 1135 Query: 1143 WACVGLGKKIKSLINDYKANGD-ISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 WAC LG+K+ L N+YKA + L K+ ++I +D + Sbjct: 1136 WACSELGEKVNKLYNEYKAKQKTFEQAKDALGKIYNNSEIDKEIKKLKEDETKDLLHNLS 1195 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 SGVP++TPVFDGA E + ML+ ADL ESGQ+ L+DG TGE FDR VTVG IYMLKL H Sbjct: 1196 SGVPIATPVFDGASVEDVTGMLKFADLPESGQTTLFDGRTGEKFDREVTVGIIYMLKLYH 1255 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 MV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDD Sbjct: 1256 MVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDD 1315 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 V GRT+VYE+IV G+D FE+G PESFNVLVKE+++L L+++L Sbjct: 1316 VAGRTKVYETIVKGDDDFESGIPESFNVLVKEIRSLALNLEL 1357 >gi|294789168|ref|ZP_06754407.1| DNA-directed RNA polymerase, beta subunit [Simonsiella muelleri ATCC 29453] gi|294482909|gb|EFG30597.1| DNA-directed RNA polymerase, beta subunit [Simonsiella muelleri ATCC 29453] Length = 1391 Score = 1587 bits (4109), Expect = 0.0, Method: Composition-based stats. Identities = 702/1402 (50%), Positives = 956/1402 (68%), Gaps = 47/1402 (3%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDER-PNEGLQAAF 59 M F R+RK F K ++D+P L+ Q SY+ FL A D+R +EGLQAAF Sbjct: 1 MTMSYTFTEKKRIRKSFAKRETVLDVPYLLTTQLESYEKFLQQGRAYDQRLNDEGLQAAF 60 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 S+FPI + +G A L+FV Y P FD+ +C R +TYA PL+ +RL ++D + + Sbjct: 61 TSIFPILSNNGYAELDFVHYVLGEPLFDIPECQLRGITYAAPLRARIRLKIYDKETPVES 120 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 K+IK+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL Sbjct: 121 KTIKEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHASGKLL 180 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS 239 ++ RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG E++L FY K Y Sbjct: 181 FSARIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLRALGYSDEQMLDMFYDKETYY 240 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 + L A L G +VD D G+ ++ + ++ ++ G+K L + Sbjct: 241 LGKNGVQTDLIAERL-RGEIAKFDIVD-DNGKVLV------NAKNVRDIQAAGLKRLTVE 292 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 D L G +A D++ ETGE+ +A I E+ L ++ + I++I L+V+ + YI Sbjct: 293 PDALIGKTLARDVIVAETGEVMAKANSEITEELLAQLDINNIKEIQTLFVNETSAGNYIS 352 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 TL TD+ D+ A + IYR+MRPG+ T E++F +FF + YDLS VGR+K N R Sbjct: 353 ATLRTDETADQTAARVAIYRMMRPGEPPTEDAVEALFKRMFFQEETYDLSRVGRMKFNTR 412 Query: 420 LNLDTPDDVR---------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDN 458 + + EDI+ I LV+LRN G +DDID+ Sbjct: 413 TYEQKLLPEQIGNWYERLLNDMSEKTDKISFILSNEDIVMTIATLVELRNSHGEVDDIDH 472 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 LGNRRVRSVGE+++NQ+R GL R+ER++KER++ + + +MP DLINAKPV +A+ EFF Sbjct: 473 LGNRRVRSVGELVENQFRSGLARVERAVKERLNQAESEGLMPTDLINAKPVSAAIKEFFG 532 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG Sbjct: 533 SSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 592 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 NIGL++SL+ +AR N YGF+ETPYR+V DGKVTN++ YLSA+EE IAQANS LD G Sbjct: 593 NIGLINSLSVYARTNEYGFLETPYRRVIDGKVTNEIDYLSAIEEGRYVIAQANSELDSSG 652 Query: 639 S-FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQ 697 T++L+ CR GE IL +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQ Sbjct: 653 CLKTDQLITCREKGETILATADRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQ 712 Query: 698 RQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTS 757 RQAVP L+AE P VGTG+E VA S AIVA+R G+VE VDA R+V+R + + Sbjct: 713 RQAVPCLRAEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDEEATAEHG 772 Query: 758 GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMP 817 GVDIY L+KF RSNQ+T +NQRP V GD +++ D+IADG STDLG+LALG+NM +AFMP Sbjct: 773 GVDIYNLVKFTRSNQSTNINQRPAVNAGDVLQKGDLIADGASTDLGELALGQNMTIAFMP 832 Query: 818 WHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNID 877 W+GYN+EDS+LISER+ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE+ +D Sbjct: 833 WNGYNYEDSILISERVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSEKMQNRLD 892 Query: 878 ECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSG 937 E GI+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SG Sbjct: 893 ESGIVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSG 952 Query: 938 TVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 TV+DV++F R GI +++R+ S+ +++ +D +D+ I D + + R+ ++ GQ A Sbjct: 953 TVIDVQVFTREGIQRDKRAQSIIEVELKRYRQDLNDQIRIFDNDAFDRIERMIVGQKANG 1012 Query: 998 GPKGFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 GP K ++S+ + E P R W+ V DE + + +E +K+ + + E+ ++ K Sbjct: 1013 GPNKLAKGKEITSEYLRELPSRHDWFDVRVADEDIAKQMELIKLSLQQKRQEAEELYEVK 1072 Query: 1057 IEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGT 1116 K+ GD++PPGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG Sbjct: 1073 KRKMTQGDELPPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGR 1132 Query: 1117 PVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI 1176 VDIVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + +S LR FL K+ Sbjct: 1133 TVDIVLNPLGVPSRMNIGQILEVHLGWAAKGIGQRIDKMLAEQR---KVSELRDFLNKLY 1189 Query: 1177 GTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES----- 1231 E + DD ++ +AE + G ++PVFDGA E+ I ML +A E Sbjct: 1190 NGSGKKEDLDSLSDDEIITLAENLRRGATFASPVFDGAKEQEIYEMLNLAYPSEDPDIQK 1249 Query: 1232 -G------QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLG 1284 G Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLG Sbjct: 1250 LGFNDTKTQITLYDGRSGEAFDRRVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLG 1309 Query: 1285 GKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTP 1344 GK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G P Sbjct: 1310 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMYENIVKGEHKIDAGMP 1369 Query: 1345 ESFNVLVKEMQALGLSIDLENS 1366 ESFNV+VKE+++LGL IDLE + Sbjct: 1370 ESFNVIVKEIRSLGLDIDLEQN 1391 >gi|34580865|ref|ZP_00142345.1| DNA-directed RNA polymerase beta chain [Rickettsia sibirica 246] gi|28262250|gb|EAA25754.1| DNA-directed RNA polymerase beta chain [Rickettsia sibirica 246] Length = 1373 Score = 1587 bits (4108), Expect = 0.0, Method: Composition-based stats. Identities = 761/1358 (56%), Positives = 1023/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYTTTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNILLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G+VI L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPASDEVLAKIGEVITADMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DREAALYDIFRVLRPGEPANIEAAESLFYNLFFDTERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTVDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +++DG E + CR G ++V ++DFID + Sbjct: 615 CVTDEVVYLSAIEEGKYKIGQANSKINKDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWSGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII +GAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKF 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ ++GPK K ++++++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLKGLSKGQFWQIIVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK I ++ FL ++ G I + ++ ++ ++ GV Sbjct: 1154 LAKKISTLVKEYKNKHIGIEQIKKFLIELYGENI--NSILERPEEEIISFCKKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|239947111|ref|ZP_04698864.1| DNA-directed RNA polymerase, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239921387|gb|EER21411.1| DNA-directed RNA polymerase, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 1371 Score = 1586 bits (4106), Expect = 0.0, Method: Composition-based stats. Identities = 759/1358 (55%), Positives = 1023/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TGA+ IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGAREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFDSKD+I+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDSKDVIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNVLLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPASDEVLAKIGEMITVDMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD+++Y+LS VGR+KMN RL L+ ++V Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYNLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V +G Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKNG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +D+DG E + CR G ++V ++DFID + Sbjct: 615 HVTDEVVYLSAIEEGKYKIGQANSKVDKDGKLQGEFINCRVEGGNFVMVEPHEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII VGAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA D++D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDIKDSSLYVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ ++GPK K ++S+++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKAGQTITSEMLKSLSKGQFWQLTVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K Y+ K L+ R K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKTHYDEKKDALDKRLATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL++GT +DIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLENGTVIDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI L+ +YK I ++ FL ++ G + + ++ ++ + GV Sbjct: 1154 LAKKISELVKEYKNKHIGIEQIKKFLLELYGENI--NYVLERSEEEIISFCNKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|157803327|ref|YP_001491876.1| DNA-directed RNA polymerase subunit beta [Rickettsia canadensis str. McKiel] gi|166229303|sp|A8EXK8|RPOB_RICCK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157784590|gb|ABV73091.1| DNA-directed RNA polymerase subunit beta [Rickettsia canadensis str. McKiel] Length = 1373 Score = 1585 bits (4104), Expect = 0.0, Method: Composition-based stats. Identities = 761/1358 (56%), Positives = 1023/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKIHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KDII+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDIIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYYNSVTYKLVQNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L + +G+ + + + L G Y+ Sbjct: 257 FMPGHI-TAHRLTSDLVDADTGNVLLKAGQKITPRLAQKYFREGLNNVLVARETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + EI + G++I L I +I+++ +L V+ + YIRNTL DKN+ Sbjct: 316 SEDLRDPVSDEILAKIGEMITADMLNVINDLKIKNVNVLVVNPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AE +F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DRETALCDIFRVLRPGEPANIEAAEGLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D++MP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTLMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 +VT++VVYLSA+EE I QANS +D+DG E + CR G ++V ++DFID + Sbjct: 615 RVTDEVVYLSAIEEGKYKIGQANSKVDKDGVLQGEFINCRVEGGNFVMVEPHEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++ + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRTL-AQKADGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V ED+FTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDIFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L ++DE GII VGAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALSHLDEVGIIYVGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VRIF+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRIFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ ++GPK K ++++++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIVEHFVFSWLEKLLVGQVIINGPKQVKAGQTITTEVLKGLSKGQFWQLTVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D + +E +K Y+ K L RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANIMNEIEQIKTHYDEKKEALNKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +Y+ I ++ FL K+ G + + ++ ++ ++ GV Sbjct: 1154 LAKKISTLVQEYQNKKIAIEQIKKFLIKLYGENI--NSVLERSEEEIISFCKKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++AD D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLADQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|297170814|gb|ADI21834.1| hypothetical protein [uncultured gamma proteobacterium HF0130_25M15] Length = 1370 Score = 1585 bits (4104), Expect = 0.0, Method: Composition-based stats. Identities = 710/1378 (51%), Positives = 984/1378 (71%), Gaps = 15/1378 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK +D+PDL+ +Q SY+ FL ++ P++R N GLQA F ++ Sbjct: 1 MSFSFTEKKRIRKDFGKQKPALDVPDLLTLQVNSYEGFLQKDVDPEKRENVGLQATFNNL 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA-KS 121 FPI +FS A LEFVSY + P+F+ +C R L+YA PL++ +LI +D + K Sbjct: 61 FPIESFSKNARLEFVSYRLEEPEFNERECQLRGLSYAAPLRVKTKLITYDKNTDKETVKE 120 Query: 122 IKDIKEQ----SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 +KDIK+ +Y G++PLMT+ GTF+I G R++VSQLHRSPG+ FDHDKG SGK Sbjct: 121 VKDIKQTGDTTDVYFGEIPLMTEHGTFIINGTDRVIVSQLHRSPGVFFDHDKG-VQTSGK 179 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIV 237 LL++ R+IP +G W+D EFD+KD I RIDRRRK+P T L AL +EI+ F+ K Sbjct: 180 LLFSARVIPYRGSWLDFEFDAKDNIFARIDRRRKIPATILLHALDFTDQEIIDIFFEKDS 239 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 Y ++ D + G + + V+ GK++ + +K +KE K+L Sbjct: 240 YRLSKKGVEVEIN-TDHLKGTIAEFDIKFGR--KLVVSKGKRINALHIKKIKETRKKYLQ 296 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 I L G ++++IV+ +TGEI ++ D + + +E + +I +Y++ V+ Y Sbjct: 297 IDESDLLGKILSQEIVDKKTGEIIAKSNDEVTTELIELFKEHGVNNIQTIYINDVDQGPY 356 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 I N+L D + D++ AL++IYR+MRPG+ T A+++F LFF+ ++YDLS VGR+K N Sbjct: 357 ISNSLSIDPSSDKESALIEIYRMMRPGEPPTKEAADNLFTNLFFNDERYDLSEVGRMKFN 416 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 R+ +D + KEDII ++K L+++RNG T+DDID+LGNRR+R+VGEM +N +R+ Sbjct: 417 RRVGIDKDVGSSVLSKEDIINVLKTLINIRNGSDTVDDIDHLGNRRIRTVGEMAENAFRV 476 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL+R+ER+++ER+S V+ + +MP+DLIN+KPV +A+ EFF SSQLSQ + N LS I H Sbjct: 477 GLIRVERAVRERLSLVEQEELMPRDLINSKPVSAAIKEFFGSSQLSQFMDQNNPLSEIAH 536 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +ARVN YGF Sbjct: 537 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMAIYARVNEYGF 596 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 +ETPYR+V +GK TN + YLSA++E N IAQAN+ LD + +EL+ R E L+P Sbjct: 597 LETPYRQVSNGKATNKIKYLSAIDEGNFVIAQANTMLDSKNNLVDELISARYQNEFTLMP 656 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 + I+++D SPKQ+VSIAASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTGME Sbjct: 657 PDSIEYMDVSPKQIVSIAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMER 716 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VA SG I+AKR G V+ VDA R+VI + + SGVDIY L K+ RSNQNTC+N Sbjct: 717 KVATDSGVTIIAKRGGTVDSVDASRVVIAVNDDEAITGESGVDIYNLTKYTRSNQNTCIN 776 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 QRPLVKVGD +++ D+IADG ST LG+LA+G+N+LVAFMPW+G+NFEDS+LISER+V ED Sbjct: 777 QRPLVKVGDSIQKGDVIADGASTSLGELAIGQNLLVAFMPWNGFNFEDSILISERVVQED 836 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 FT+IHIEE + +ARDTKLG EE+T DIPNV + L+ +DE GI +GAEV GDILVGK Sbjct: 837 RFTTIHIEELQCIARDTKLGSEEVTSDIPNVGDTALRKLDESGIAYIGAEVVAGDILVGK 896 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 ITPKGES +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DVR+F+R G++K++RS Sbjct: 897 ITPKGESQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMDGTVIDVRVFSREGVEKDDRSN 956 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 +E +IE + +D D+ I++ +I++RL ++L +NA G K K + L+ Sbjct: 957 EIEAAEIESVRKDLKDQLRIVEADIFNRLEKLLLNKNAKVGRKKLK----IDKALLESMK 1012 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 +W++ +Q++K+ +E+ ++ + + + + +KI+ D++PPGVL++VKVF Sbjct: 1013 PQKWFEIKLQNQKLNDELETYYKAHKELEKEFKQKLEAARKKIEAYDELPPGVLKMVKVF 1072 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR +Q GDK+AGRHGNKG++SRI+P EDMP+++DGTP+DIVLNPLGVPSRMNVGQI Sbjct: 1073 LAVKRRVQPGDKVAGRHGNKGVISRIVPVEDMPYMEDGTPIDIVLNPLGVPSRMNVGQIL 1132 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI--SDYDDDSVLR 1195 ETHLGWA GLG K+K+++ + + + LR+FL+KV T +EKI + D+ ++ Sbjct: 1133 ETHLGWAAKGLGSKVKTMLKEKEGASRVKALRTFLDKVYNTNKLSEKIPLNKLKDEEIVE 1192 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 ++E K GVP+ TPVFDGA E I +L++ADL ESGQ+ L DG TGE FDRP+TVGY+Y Sbjct: 1193 LSENLKDGVPMGTPVFDGARENEIKELLKLADLPESGQTRLIDGRTGEFFDRPITVGYMY 1252 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 +LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA++ L+E+L Sbjct: 1253 ILKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASHTLRELL 1312 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAK 1373 T+KSDDV GRTR+Y+ IV G + +TG PESFNVL+KE+++LGL++DL + + K Sbjct: 1313 TVKSDDVQGRTRMYKQIVDGTNEVDTGIPESFNVLMKEIRSLGLNMDLVEDPKQANEK 1370 >gi|302344363|ref|YP_003808892.1| DNA-directed RNA polymerase, subunit beta [Desulfarculus baarsii DSM 2075] gi|301640976|gb|ADK86298.1| DNA-directed RNA polymerase, beta subunit [Desulfarculus baarsii DSM 2075] Length = 1386 Score = 1585 bits (4103), Expect = 0.0, Method: Composition-based stats. Identities = 726/1381 (52%), Positives = 977/1381 (70%), Gaps = 17/1381 (1%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 RVRK FGK +IIDIP+LI++QK SY+ FL ++A R + GL A F+SVFPI FS Sbjct: 8 RTRVRKNFGKIAKIIDIPNLIDMQKQSYERFLQKDVAHAARRDVGLHAVFRSVFPIRDFS 67 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 G + LE+VSY+F K+D ++CL R +T+ PLK+T+RL+V+D+D+ T +SI+DIKEQ Sbjct: 68 GTSSLEYVSYDFGEVKYDEEECLARGMTFEAPLKLTVRLVVYDIDKETDVQSIRDIKEQE 127 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 IY G LPLMT GTF++ G +R+VVSQLHRSPGI FDHD+GR SGKLLY+ RIIP +G Sbjct: 128 IYFGTLPLMTDRGTFIVNGTERVVVSQLHRSPGIFFDHDRGRTHSSGKLLYSARIIPLRG 187 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 W+D+EFD KDI++VRIDRRRK PVT L ALG ++++L Y K V+ G+ + Sbjct: 188 SWIDLEFDPKDILYVRIDRRRKFPVTLLLKALGYSAQDLLDMMYVKDVFFIDGEQVKRKI 247 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 +M+G + + + D + + +++ GKK+T +K L+E G+ + + + L G + A Sbjct: 248 QPE-IMMGREATMEIQDPEGEKPLVKLGKKITRRAIKRLEELGLDRIPVREEDLLGRFAA 306 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 D V+ TGE+ I + L ++ + I ++P L++D ++ R+TL DK +D Sbjct: 307 VDFVDAGTGELICSLNQPITHEILLKLRAAGIDEVPTLFIDGQTRSSSFRDTLELDKVED 366 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 +A++DIYR +RP + T VA + FN LFF + YDLS VGR+K+N+RL LD +++R Sbjct: 367 PDEAIIDIYRKLRPSNPPTLEVARTFFNNLFFSPEHYDLSAVGRLKVNLRLGLDVAEELR 426 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 +R+EDI+ ++ L+DL++ +G DDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER Sbjct: 427 TLRREDIMEAVRQLIDLKDAEGPADDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKER 486 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 +S +I+++MP DLIN+KPV + V EFF +SQLSQ + N LS +TH RRLSALG GG+ Sbjct: 487 MSLQEIEALMPHDLINSKPVSAVVKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGL 546 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 R RAG E+RDVH THYGRICP ET EG NIGL+ SL+++ARVN YGFIETPYR DG+ Sbjct: 547 TRERAGFEVRDVHNTHYGRICPIETPEGPNIGLIVSLSTYARVNDYGFIETPYRTAGDGR 606 Query: 610 VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPK 669 V + +LSA+EE + IAQAN+ LD++G F +LV R GE +L+ +++ ++D SP Sbjct: 607 VHAETRFLSALEEADHPIAQANALLDDEGRFVNDLVSVRKEGEFMLLGPQEVHYMDVSPN 666 Query: 670 QVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVA 729 Q+VS+AASL+PFLENDD+NR LMG NMQRQAVP+L+ AP VGTG+E VVA+ SG +VA Sbjct: 667 QLVSVAASLVPFLENDDANRALMGSNMQRQAVPVLRTMAPLVGTGIEEVVARDSGVCVVA 726 Query: 730 KRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVR 789 G++ VDA RIV+R + + S V IY+L+KFQRSNQNTC++Q+P+V G V Sbjct: 727 AADGVINDVDASRIVVRYDKPLTAQAHSQVKIYKLIKFQRSNQNTCISQKPIVVRGQRVV 786 Query: 790 RNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEV 849 + I+ADG + D GDLALG+N +VAFM W GYN+EDS+LISER+V +D+FTS+HIEEFE Sbjct: 787 KGQILADGAAVDHGDLALGQNAMVAFMSWGGYNYEDSILISERIVKDDIFTSVHIEEFET 846 Query: 850 MARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPE 909 +ARDTKLG EEITRDIPNV EE L N+DE GI+ +GAE+ GDILVGKITPKGE+ ++PE Sbjct: 847 VARDTKLGKEEITRDIPNVGEEALANLDESGIVRIGAEIKAGDILVGKITPKGETQLSPE 906 Query: 910 EKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLAR 969 EKLLRAIFGEKA DV+DTSLRVP GV G V+D ++F+R GI+K+ER+ ++E E++ L + Sbjct: 907 EKLLRAIFGEKAGDVKDTSLRVPPGVEGIVIDAKVFSRKGIEKDERAQAIEDEEVSSLLK 966 Query: 970 DKDDEQVILDRNIYSRLMEILCGQNAVSGPKG------FKKSTVLSSDLISEYPRSQWWQ 1023 D+ DE I+ RN + L G+ K + L++ + Q Sbjct: 967 DESDEVRIIHRNAMDDIEAFLKGRVLAKPLKNDMGRVLIEAKKELTAADLKGVTLQQLRH 1026 Query: 1024 FAVQ--DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + DE VQ + E + Y ++ F+NKI K++ GD++PPGV+++VKV+VAMK Sbjct: 1027 LELAGVDEDVQSDFERIVDGYAEQIEMIRQAFENKIGKLRRGDELPPGVIKMVKVYVAMK 1086 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R + GDKMAGRHGNKG+VSRILP EDMP DGTPVDIVLNPLGVPSRMNVGQ+ ETHL Sbjct: 1087 RKLAVGDKMAGRHGNKGVVSRILPVEDMPHFADGTPVDIVLNPLGVPSRMNVGQVLETHL 1146 Query: 1142 GWACVGLGKKIKSLI-------NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVL 1194 GWAC GLG+++ L + ++ L+ +L ++ + IS D+ ++ Sbjct: 1147 GWACAGLGRRVGQLAEAVAAAREQMEKEARLAALKDYLTQIYSPEELAK-ISQSGDEGLV 1205 Query: 1195 RVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYI 1254 R A + G+P++TPVFDGA E I +L +A L +GQS+L DG TGEPFDR VTVG + Sbjct: 1206 RNALWLEDGLPIATPVFDGASEAEIRRLLELAGLPTTGQSVLIDGRTGEPFDRTVTVGAM 1265 Query: 1255 YMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEM 1314 YMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE Sbjct: 1266 YMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYSLQEF 1325 Query: 1315 LTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 LT+KSDDV GRTR+YE IV G + E G PESFNVLVKE+QAL L ++L + + Sbjct: 1326 LTVKSDDVAGRTRMYEKIVKGENHLEAGLPESFNVLVKELQALCLDVELVEQNRETPYVL 1385 Query: 1375 E 1375 E Sbjct: 1386 E 1386 >gi|145628895|ref|ZP_01784695.1| DNA-directed RNA polymerase beta subunit [Haemophilus influenzae 22.1-21] gi|144979365|gb|EDJ89051.1| DNA-directed RNA polymerase beta subunit [Haemophilus influenzae 22.1-21] Length = 1312 Score = 1584 bits (4101), Expect = 0.0, Method: Composition-based stats. Identities = 695/1333 (52%), Positives = 946/1333 (70%), Gaps = 23/1333 (1%) Query: 35 ASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWR 94 S+D F+ + +GL+AAF+SVFPI + +G L++V Y + P+FDV +C R Sbjct: 2 DSFDKFIQKD----PEGQQGLEAAFRSVFPIVSNNGYTELQYVDYRLEEPEFDVRECQIR 57 Query: 95 DLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVV 154 TYA L++ LRL+ +D + ++++KDIKE +YMG++PLMT +GTFVI G +R++V Sbjct: 58 GSTYAAGLRVKLRLVSYDK--ESSSRAVKDIKENEVYMGEIPLMTDNGTFVINGTERVIV 115 Query: 155 SQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPV 214 SQLHRSPG+ FD DKG+ SGK+LY RIIP +G W+D EFD KD + RIDRRRK+P Sbjct: 116 SQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPA 175 Query: 215 TSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVI 274 T L ALG +EEIL+ F+ KI + GD L L G S + G+ + Sbjct: 176 TIILRALGYTTEEILNLFFDKITFEIAGDKLLMTLVPERL-RGETASFDIE--ANGKVYV 232 Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLE 334 E G+++T+ +K+L++ + + + S+ + G ++D V+ E+GEI A I ++L Sbjct: 233 ERGRRITARHIKALEKDNISQVVVPSEYILGKVASKDYVDLESGEIICPANGEISLETLA 292 Query: 335 EIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAES 394 ++ + I L+ + ++ YI TL D D+ AL +IYR+MRPG+ T +E+ Sbjct: 293 KLAQAGYTTIETLFTNDLDYGPYISETLRVDPTYDKTSALYEIYRMMRPGEPPTPESSEA 352 Query: 395 MFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTID 454 +FN LFF +++YDLSTVGR+K N L + + EDIIA+++ L+D+RNG+G +D Sbjct: 353 LFNNLFFSAERYDLSTVGRMKFNRSLAFPEGEGAGILSNEDIIAVMRKLIDIRNGRGEVD 412 Query: 455 DIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVC 514 DID+LGNRR+RSVGEM +NQ+R+GL+R+ER++KER+S D+D++ PQDLIN KP+ +AV Sbjct: 413 DIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLSLGDLDAITPQDLINPKPISAAVK 472 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 EFF SSQLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET Sbjct: 473 EFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIET 532 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSL 634 EG NIGL++SL++FAR N YGF+ETPYRKV DG+VT ++ YLS ++E N IAQANS+L Sbjct: 533 PEGPNIGLINSLSAFARTNDYGFLETPYRKVVDGQVTEEIEYLSVIDEANYIIAQANSNL 592 Query: 635 DEDGSFTEELVFCR-CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMG 693 DE+ FT+ V R GE L E I ++D S +QVVS+AA+LIPFLE+DD+NR LMG Sbjct: 593 DENNRFTDAFVTARGERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFLEHDDANRALMG 652 Query: 694 CNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD 753 NMQRQAVP L+A+ P VGTGME +A SG A+VAKR G V+ VDA RIVI+ E + Sbjct: 653 ANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAVVAKRGGTVQYVDASRIVIKVNEDETI 712 Query: 754 PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLV 813 +G+DIY L+K+ RSNQNTC+NQ P V +GD + R +++ADGPSTDLG+LALG+N+ V Sbjct: 713 AGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGDPINRGEVLADGPSTDLGELALGQNIRV 772 Query: 814 AFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 AFMPW+GYNFEDSML+SER+V +D FT+IHI+E +ARDTKLG EEIT DIPNV E L Sbjct: 773 AFMPWNGYNFEDSMLVSERVVQQDRFTTIHIQELSCVARDTKLGAEEITADIPNVGESAL 832 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 +DE GI+ VGAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ Sbjct: 833 SKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 892 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 G SGTV+DV++F R G++K++R++ +E Q+ +D +E IL+ +++R+ +L Sbjct: 893 GTSGTVIDVQVFTRDGVEKDKRALEIEEMQLREAKKDLTEELEILEAGLFARVRNLLISS 952 Query: 994 NAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 A + + + R++W + + DE+ Q +E L QYE + E + Sbjct: 953 GA-------------DAAQLDKLDRTKWLEQTIADEEKQNQLEQLAEQYEELRKEFEHKL 999 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 + K +KI GDD+ PGVL+VVKV++A+KR IQ GDKMAGRHGNKG++S+I P EDMP+ + Sbjct: 1000 EVKRKKIIKGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDE 1059 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 +G PV+IVLNPLGVPSRMN+GQI ETHLG A G+G +I +++ + + Sbjct: 1060 NGQPVEIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINAMLKQKQEVEKLRSYIQKAY 1119 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 ++G GS +S + D+ VLR+A + G+PV+TPVFDGADE I +L++ L SGQ Sbjct: 1120 DLLGNGSQKVDLSTFTDEEVLRLAGNLRKGLPVATPVFDGADEAEIKELLKLGGLPTSGQ 1179 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 LYDG TGE F+RPVTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR Sbjct: 1180 ITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1239 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV+GN E GTPESFNV++KE Sbjct: 1240 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVSGNQHMEPGTPESFNVIMKE 1299 Query: 1354 MQALGLSIDLENS 1366 +++LGL+I+L+ Sbjct: 1300 IRSLGLNIELDEE 1312 >gi|148827706|ref|YP_001292459.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae PittGG] gi|148718948|gb|ABR00076.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae PittGG] Length = 1312 Score = 1583 bits (4099), Expect = 0.0, Method: Composition-based stats. Identities = 695/1333 (52%), Positives = 946/1333 (70%), Gaps = 23/1333 (1%) Query: 35 ASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWR 94 S+D F+ + +GL+AAF+SVFPI + +G L++V Y + P+FDV +C R Sbjct: 2 DSFDKFIQKD----PEGQQGLEAAFRSVFPIVSNNGYTELQYVDYRLEEPEFDVRECQIR 57 Query: 95 DLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVV 154 TYA L++ LRL+ +D + ++++KDIKE +YMG++PLMT +GTFVI G +R++V Sbjct: 58 GSTYAAGLRVKLRLVSYDK--ESSSRAVKDIKENEVYMGEIPLMTDNGTFVINGTERVIV 115 Query: 155 SQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPV 214 SQLHRSPG+ FD DKG+ SGK+LY RIIP +G W+D EFD KD + RIDRRRK+P Sbjct: 116 SQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPA 175 Query: 215 TSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVI 274 T L ALG +EEIL+ F+ KI + GD L L G S + G+ + Sbjct: 176 TIILRALGYTTEEILNLFFDKITFEIAGDKLLMTLVPERL-RGETASFDIE--ANGKVYV 232 Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLE 334 E G+++T+ +K+L++ + + + S+ + G ++D V+ E+GEI A I ++L Sbjct: 233 ERGRRITARHIKALEKDNISQVVVPSEYILGKVASKDYVDLESGEIICPANGEISLETLA 292 Query: 335 EIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAES 394 ++ + I L+ + ++ YI TL D D+ AL +IYR+MRPG+ T +E+ Sbjct: 293 KLAQAGYTTIETLFTNDLDYGPYISETLRVDPTYDKISALYEIYRMMRPGEPPTPESSEA 352 Query: 395 MFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTID 454 +FN LFF +++YDLSTVGR+K N L + + EDIIA+++ L+D+RNG+G +D Sbjct: 353 LFNNLFFSAERYDLSTVGRMKFNRSLAFPEGEGAGILSNEDIIAVMRKLIDIRNGRGEVD 412 Query: 455 DIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVC 514 DID+LGNRR+RSVGEM +NQ+R+GL+R+ER++KER+S D+D++ PQDLIN KP+ +AV Sbjct: 413 DIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLSLGDLDAITPQDLINPKPISAAVK 472 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 EFF SSQLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET Sbjct: 473 EFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIET 532 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSL 634 EG NIGL++SL++FAR N YGF+ETPYRKV DG+VT ++ YLS ++E N IAQANS+L Sbjct: 533 PEGPNIGLINSLSAFARTNDYGFLETPYRKVVDGQVTEEIEYLSVIDEANYIIAQANSNL 592 Query: 635 DEDGSFTEELVFCR-CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMG 693 DE+ FT+ V R GE L E I ++D S +QVVS+AA+LIPFLE+DD+NR LMG Sbjct: 593 DENNRFTDAFVTARGERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFLEHDDANRALMG 652 Query: 694 CNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD 753 NMQRQAVP L+A+ P VGTGME +A SG A+VAKR G V+ VDA RIVI+ E + Sbjct: 653 ANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAVVAKRGGTVQYVDASRIVIKVNEDETI 712 Query: 754 PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLV 813 +G+DIY L+K+ RSNQNTC+NQ P V +GD + R +++ADGPSTDLG+LALG+N+ V Sbjct: 713 AGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGDPINRGEVLADGPSTDLGELALGQNIRV 772 Query: 814 AFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 AFMPW+GYNFEDSML+SER+V +D FT+IHI+E +ARDTKLG EEIT DIPNV E L Sbjct: 773 AFMPWNGYNFEDSMLVSERVVQQDRFTTIHIQELSCVARDTKLGAEEITADIPNVGESAL 832 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 +DE GI+ VGAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+ Sbjct: 833 SKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 892 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 G SGTV+DV++F R G++K++R++ +E Q+ +D +E IL+ +++R+ +L Sbjct: 893 GTSGTVIDVQVFTRDGVEKDKRALEIEEMQLREAKKDLTEELEILEAGLFARVRNLLISS 952 Query: 994 NAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 A + + + R++W + + DE+ Q +E L QYE + E + Sbjct: 953 GA-------------DAAQLDKVDRTKWLEQTIADEEKQNQLEQLAEQYEELRKEFEHKL 999 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 + K +KI GDD+ PGVL+VVKV++A+KR IQ GDKMAGRHGNKG++S+I P EDMP+ + Sbjct: 1000 EVKRKKIIKGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDE 1059 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 +G PV+IVLNPLGVPSRMN+GQI ETHLG A G+G +I +++ + + Sbjct: 1060 NGQPVEIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINAMLKQKQEVEKLRSYIQKAY 1119 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 ++G GS +S + D+ VLR+A + G+PV+TPVFDGADE I +L++ L SGQ Sbjct: 1120 DLLGNGSQKVDLSTFTDEEVLRLAGNLRKGLPVATPVFDGADEAEIKELLKLGGLPTSGQ 1179 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 LYDG TGE F+RPVTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR Sbjct: 1180 ITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1239 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV+GN E GTPESFNV++KE Sbjct: 1240 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVSGNQHMEPGTPESFNVIMKE 1299 Query: 1354 MQALGLSIDLENS 1366 +++LGL+I+L+ Sbjct: 1300 IRSLGLNIELDEE 1312 >gi|238752789|ref|ZP_04614257.1| DNA-directed RNA polymerase subunit beta [Yersinia rohdei ATCC 43380] gi|238708987|gb|EEQ01237.1| DNA-directed RNA polymerase subunit beta [Yersinia rohdei ATCC 43380] Length = 1287 Score = 1583 bits (4099), Expect = 0.0, Method: Composition-based stats. Identities = 695/1305 (53%), Positives = 938/1305 (71%), Gaps = 18/1305 (1%) Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 +FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G + Sbjct: 1 MFPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--T 58 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 59 VKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 118 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL + +IL F+ K+V+ R Sbjct: 119 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTTQILDLFFEKVVFEIR 178 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 + L L G S + G+ +E +++T+ ++ L++ G+ + + + Sbjct: 179 DNKLQMELVPERL-RGETASFDIE--ANGKVYVEKARRITARHIRQLEKDGIDRIEVPVE 235 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 + G VA+D ++ TGE+ A + L ++ S + I L+ + +++ AYI T Sbjct: 236 YIAGKVVAKDYIDENTGELICAANMELSLDLLAKLSQSGHKQIETLFTNDLDHGAYISET 295 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 296 LRVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLL 355 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + + KEDI ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R Sbjct: 356 RDEIEGSGILSKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 415 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+ Sbjct: 416 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETP Sbjct: 476 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V DG VT+++ YLSA+EE N IAQANS+LDEDG F E+LV CR GE L R+++ Sbjct: 536 YRRVRDGVVTDEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 596 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P Sbjct: 656 DSGVTSVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 715 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ + R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+ Sbjct: 716 VNLGEPIERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 775 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 776 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 835 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 836 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 895 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ +++R+ +L + +D +S+ PR +W Sbjct: 896 MQLKQAKKDLTEELQILEAGLFARIHAVLVSGG-------------IEADKLSKLPRDRW 942 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE Q +E L QY+ KS E + K KI GDD+ PGVL++VKV++A+K Sbjct: 943 LELGLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVK 1002 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHL Sbjct: 1003 RQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1062 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G+KI +++ + + + +S + DD VLR+AE K Sbjct: 1063 GMAAKGIGEKINAMLKKQEEVAKLREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLK 1122 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+P++TPVFDGA E+ I +L++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH Sbjct: 1123 KGMPIATPVFDGATEKEIKELLQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNH 1182 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 1183 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1242 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE Sbjct: 1243 VNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1287 >gi|6652720|gb|AAF22435.1| RNA polymerase beta subunit [Rickettsia conorii] Length = 1373 Score = 1583 bits (4098), Expect = 0.0, Method: Composition-based stats. Identities = 759/1358 (55%), Positives = 1022/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA P K+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPPKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYTTTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNILLKAGQKITPRLAKKYSGEGLNNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPASDEVLAKIGEMITADMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAESLFYNLFFDTERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +++DG E + CR G ++V ++DFID + Sbjct: 615 CVTDEVVYLSAIEEGKYKIGQANSKINKDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII +GAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE Sbjct: 914 PEEKLLRAIFGEKAFDVEDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKF 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ ++GPK K ++++++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLKGLSKGQFWQIIVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK I ++ FL ++ G I + ++ ++ ++ GV Sbjct: 1154 LAKKISTLVKEYKNKHIGIEQIKKFLIELYGENI--NSILERPEEEIISFCKKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|51473339|ref|YP_067096.1| DNA-directed RNA polymerase subunit beta [Rickettsia typhi str. Wilmington] gi|55584169|sp|P77941|RPOB_RICTY RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|51459651|gb|AAU03614.1| RNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 1374 Score = 1582 bits (4097), Expect = 0.0, Method: Composition-based stats. Identities = 770/1363 (56%), Positives = 1031/1363 (75%), Gaps = 9/1363 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 RVRK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRVRKNFGHINLVADIPNLIEIQKNSYERNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DVD+C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVDECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS-QRGDFWCFP 248 W+D EFD+KD+I+ RIDR+RK+ T+ L A+GM++EEI+ +Y + Y + W Sbjct: 197 SWLDFEFDAKDVIYFRIDRKRKLYATTLLRAIGMNTEEIMKFYYNSVTYKCIKNKGWSVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L + G+ + +T + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNVLLKAGQKITPRLAQKYFSIGLNNILVTHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + E+ EI + G++I L+ I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPESDEILAKIGEMITADMLQVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD+++YDLS VGR+KMN RL L+ +++ Sbjct: 375 DRETALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEI 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I++ILV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+R+E+S+ E Sbjct: 435 TVLTIDDIKNIVRILVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRIEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +D+DG E + CR G ++V ++DFID + Sbjct: 615 YVTDEVVYLSAIEEGKYKIGQANSKVDQDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K EAPFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTEAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVE+VD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVERVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII VGAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VRIF+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRIFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L G +SGPK ++++++ + Q WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGHVIISGPKQITAGQTITTEMLKGLSKGQLWQLIVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K+ Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKIHYDEKKHALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK N DI ++ FL ++ G I + ++ ++ + GV Sbjct: 1154 LAKKISTLVKEYKDNNIDIEQIKKFLLELYGKDI--NYILEGSEEGIISFCNKVSKGVYF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++AD D SGQ L DG TGE FDR VTVG+ Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLADQDLSGQVKLIDGRTGEYFDRLVTVGHKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE + +K Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTASK 1374 >gi|157825320|ref|YP_001493040.1| DNA-directed RNA polymerase subunit beta [Rickettsia akari str. Hartford] gi|166229301|sp|A8GMA7|RPOB_RICAH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157799278|gb|ABV74532.1| DNA-directed RNA polymerase subunit beta [Rickettsia akari str. Hartford] Length = 1373 Score = 1582 bits (4096), Expect = 0.0, Method: Composition-based stats. Identities = 758/1358 (55%), Positives = 1022/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KD+++ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVLYFRIDRKRKLYATTLLRAIGMSTEEIIKFYYNSVTYKLVKKKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L + +G+ + + + L G Y+ Sbjct: 257 FIPKHI-TAHRLTSDLVDADTGNVLLKAGQKITPRLAQKYCAEGINNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPASDEVLAKIGEIITSDMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFDS++YDLS VGR+KMN RL L ++V Sbjct: 375 DREAALCDIFRVLRPGEPTNIEAAESLFYNLFFDSERYDLSEVGRIKMNSRLGLSISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYRKV DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRKVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 +V ++V+YLSA+EE I QANS +D DG E + CR G ++V ++DFID + Sbjct: 615 RVIDEVIYLSAIEEGKYKIGQANSKVDRDGKLQGEFINCRVEGGNFVMVEPHEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++E +D + V IY L+KFQ+SN NTC+NQ+PLV+VG Sbjct: 735 LALHDGIVEQVDSNRIVIRTLEQKID-GSPSVYIYNLLKFQKSNHNTCINQKPLVQVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V ED+FTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDIFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII VGAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ ++G K K ++++++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSLLEKLLVGQVIINGLKQVKAGQTITTEMLKGLSKGQFWQLTVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K+ Y+ K L RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKIHYDEKKDALNKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVVSRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L +KI +L+ +YK I ++ FL ++ G I + ++ ++ + GV Sbjct: 1154 LAQKISTLVKEYKNKNIGIEKIKKFLLELYGENI--NYILERSEEEIISFCNKVGKGVYF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|238650685|ref|YP_002916538.1| DNA-directed RNA polymerase subunit beta [Rickettsia peacockii str. Rustic] gi|259494192|sp|C4K1N9|RPOB_RICPU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|238624783|gb|ACR47489.1| DNA-directed RNA polymerase subunit beta [Rickettsia peacockii str. Rustic] Length = 1373 Score = 1581 bits (4093), Expect = 0.0, Method: Composition-based stats. Identities = 756/1358 (55%), Positives = 1020/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD K+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTTKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYTTTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNILLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPASDEVLAKIGEMITADMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ AES+F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DREAALCDIFRVLRPGEPVNIEAAESLFYNLFFDTERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +V+ V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVAVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +++DG E + CR G ++V ++DFID + Sbjct: 615 CVTDEVVYLSAIEEGKYKIGQANSKINKDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR +E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRILE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII +GAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVQAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGV+GTVV+VR+F+R G++K++R+I++E++QIE Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVNGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKF 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ ++GPK ++++++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQATVGQTITTEMLKGLSKGQFWQITVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK I ++ FL ++ G I + ++ ++ ++ GV Sbjct: 1154 LAKKISTLVKEYKNKHIGIEQIKKFLIELYGENI--NSILERPEEEIIAFCKKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|6652726|gb|AAF22439.1|AF076437_1 RNA polymerase beta subunit [Rickettsia prowazekii] Length = 1374 Score = 1581 bits (4093), Expect = 0.0, Method: Composition-based stats. Identities = 764/1363 (56%), Positives = 1024/1363 (75%), Gaps = 9/1363 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRLRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYIG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D EFD+KDII+ RIDRRRK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDFEFDAKDIIYFRIDRRRKLYATTLLRAIGMSTEEIIKFYYNSVTYKFVKNKGWSVE 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LV DTG ++ +G+K+T L + + + +T + G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVYADTGNVLLNAGQKITPRLAQKYFGVSLNNILVTHETFIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L+ I +I+++ +L ++ + +YIRNTL DKN+ Sbjct: 316 SEDLRDPASDEVLAKIGEMITSDMLKVINDLKIKNVNVLVINPQ-SGSYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I++ILV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRILVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V +G Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKNG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +D+DG E + CR G ++V +++DFID + Sbjct: 615 YVTDEVVYLSAIEEGKYKIGQANSKVDQDGKLQGEFINCRVEGGNFVMVEPDEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K EAPFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTEAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVE+VD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVERVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII VGAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VRIF+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRIFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L G ++GPK ++++++ + Q WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGHVIINGPKQITAGQTITTEMLKGLSKGQLWQITVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +K+ Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKIHYDEKKYALDKRFTTKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK N DI ++ FL ++ G I + ++ ++ + GV Sbjct: 1154 LAKKISTLVKEYKDNHIDIEEIKKFLLELYGKDI--NYILEGSEEEIISFCNKVSKGVYF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML +A D SGQ L DG TGE FDR VTVG+ Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLELAGQDLSGQVKLIDGRTGEYFDRLVTVGHKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 + Y+SIV G + FE+G PESFNV++KE ++L L++ LE + +K Sbjct: 1332 KTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTPSK 1374 >gi|167626046|ref|YP_001676340.1| DNA-directed RNA polymerase subunit beta [Shewanella halifaxensis HAW-EB4] gi|167356068|gb|ABZ78681.1| DNA-directed RNA polymerase, beta subunit [Shewanella halifaxensis HAW-EB4] Length = 1316 Score = 1580 bits (4092), Expect = 0.0, Method: Composition-based stats. Identities = 686/1336 (51%), Positives = 941/1336 (70%), Gaps = 21/1336 (1%) Query: 31 EVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDD 90 +Q S+ F D G +AAF+SVFPI +FSG + L++VSY+ P FDV + Sbjct: 2 SIQLDSFKKF----TDQDPTGERGFEAAFRSVFPIKSFSGNSELQYVSYKLGEPVFDVKE 57 Query: 91 CLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQ 150 C R +TY+ PL++ LR++++D + G ++KDIKEQ +YMGD+PLMT +GTFVI G + Sbjct: 58 CQIRGVTYSAPLRVKLRMVLYDREAAPG--TVKDIKEQEVYMGDIPLMTDNGTFVINGTE 115 Query: 151 RIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRR 210 R++VSQLHRSPG+ FDHD+G+ SGK+LY RIIP +G W+D EFD KD + VRIDRRR Sbjct: 116 RVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDALFVRIDRRR 175 Query: 211 KVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTG 270 K+ + L AL +++IL F+ ++ + + D L A D + G S + D + G Sbjct: 176 KLAASIILRALDYSTQDILDLFFDRVNFKIKKDSLVMDLVA-DRLRGETASYDIKDAE-G 233 Query: 271 EQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDE 330 ++E G+++T+ ++ L++ L + + + G +D ++ +TGE+ + A I Sbjct: 234 TVLVEKGRRITARHIRQLEKSNTTELEVPVEYISGKISGQDYIDPDTGEVLVSANAEISL 293 Query: 331 KSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFS 390 + L ++ + I++I LY++ ++N AYI +TL D +R +AL++IYR+MRPG+ T Sbjct: 294 EDLAKLSMAGIKEISTLYINELDNGAYISDTLRIDSTTNRLEALVEIYRMMRPGEPPTKD 353 Query: 391 VAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGK 450 AE++FN LFF ++YDLS VGR+K N RL++D + + KEDI+A++K ++ +RNG Sbjct: 354 AAEALFNNLFFSEERYDLSKVGRMKFNRRLSIDDDEGTGILSKEDIVAVMKNIIAIRNGF 413 Query: 451 GTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVV 510 +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ER+++ER+S D++ +MPQDLINAKP+ Sbjct: 414 DEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLSLGDLNELMPQDLINAKPIS 473 Query: 511 SAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRIC 570 +AV EFF SSQLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C Sbjct: 474 AAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLC 533 Query: 571 PAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQA 630 P ET EG NIGL++SL++FAR N YGF+ETPYRKV DG VT++V YLSA+EE IAQA Sbjct: 534 PIETPEGPNIGLINSLSTFARTNNYGFLETPYRKVIDGVVTDEVDYLSAIEEGRYVIAQA 593 Query: 631 NSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRV 690 LDE+G +EL+ CR G+ + I ++D SP+Q++S+AASLIPFLE+DD+NR Sbjct: 594 IVQLDENGRMMDELIACRHKGDSTFMGAADIQYMDVSPQQIISVAASLIPFLEHDDANRA 653 Query: 691 LMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG 750 LMG NMQRQAVP LKA+ P VGTG+E +A SG + AKR G V+ VDA RIV++ E Sbjct: 654 LMGANMQRQAVPTLKADKPLVGTGIERTLAVDSGVVVAAKRGGYVDYVDASRIVVKVNEA 713 Query: 751 DLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRN 810 +L P +G+DIY L K+ RSNQNTC+NQRP VGD + R D++ADGPSTDLGDLALG+N Sbjct: 714 ELTPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGDPIVRGDVLADGPSTDLGDLALGQN 773 Query: 811 MLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSE 870 M +AFMPW+GYNFEDS+LISER+ ED FT+IHI+E +ARDTKLG EEIT DIPNV E Sbjct: 774 MRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGSEEITADIPNVGE 833 Query: 871 EGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLR 930 L +DE GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLR Sbjct: 834 SALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 893 Query: 931 VPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEIL 990 VP+ V GT++DV++F R G++K++R++ +E I +D +E IL+ + R +L Sbjct: 894 VPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEMHIAQAKKDLTEEFKILEDGVLGRARNLL 953 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 +T ++ PRSQ + DE Q +E L Q E K+ + Sbjct: 954 L-------------ATGFDEAQLNAIPRSQLLVQTIDDEAKQTELEQLAEQAEELKADFD 1000 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 +F+ K KI GDD+ PGVL++VKV++A+KR IQ GDKMAGRHGNKG++S+I P EDMP Sbjct: 1001 KKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKICPVEDMP 1060 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 + + G PVDIVLNPLGVPSRMN+GQ+ E H+G A G+G +I ++ + + ++ Sbjct: 1061 YDEKGNPVDIVLNPLGVPSRMNIGQVLEVHMGAAAKGIGNRITEMLEEQRELAELRGYIK 1120 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 + ++ I + DD +LR+A+ K GVP++TP FDGA E+ I ML +A L + Sbjct: 1121 QVYELGDEVIQKVDIDSFTDDEILRLAKNLKGGVPIATPAFDGAKEKEIKQMLELAGLPQ 1180 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 SGQ L DG TG F+R VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ G Sbjct: 1181 SGQLTLIDGRTGNEFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1240 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV GN + G PESFNVL Sbjct: 1241 GQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNYQMQPGMPESFNVL 1300 Query: 1351 VKEMQALGLSIDLENS 1366 +KE+++LG++I+L+ Sbjct: 1301 LKEIRSLGINIELDTK 1316 >gi|157826668|ref|YP_001495732.1| DNA-directed RNA polymerase subunit beta [Rickettsia bellii OSU 85-389] gi|166229302|sp|A8GV24|RPOB_RICB8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157801972|gb|ABV78695.1| DNA-directed RNA polymerase subunit beta [Rickettsia bellii OSU 85-389] Length = 1372 Score = 1578 bits (4085), Expect = 0.0, Method: Composition-based stats. Identities = 767/1358 (56%), Positives = 1023/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 RVRK FG + DIP+LIE+QK SY+ FL ++ ER N+GLQ+ S+FPI+ S Sbjct: 17 KRVRKNFGHINLVADIPNLIEIQKNSYEKNFLQLDTKDSERKNKGLQSILNSIFPISDPS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+Y LK+TLRL ++D+DE TG++ IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECTQRSLSYDSALKVTLRLSIWDIDEDTGSREIKGIKEQQ 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMG++PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ S KLLY+ R+IP +G Sbjct: 137 VYMGNIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSRKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KDII+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDIIYFRIDRKRKLYATTLLKAIGMSTEEIIKFYYDSVNYKVVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + + +++S L+D DTG ++++G+K+T L K +G+ + ++ + L G Y+ Sbjct: 257 FMPSHI-TAHRLTSDLIDADTGNVLLKAGQKITPRLAKKYAGEGLNNILVSHEALIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + E+ EI + G++I + L I +I++I +L ++ + YIRNTL +DKN+ Sbjct: 316 SEDLKDPESDEILAKIGEMITVELLSVISDLKIKNISVLVINPQ-SGPYIRNTLFSDKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD ++YDLS VGR+KMN RL L+ D+ Sbjct: 375 DRESALFDIFRVLRPGEPANIEAAESLFYNLFFDPERYDLSEVGRIKMNSRLELNISDET 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++ KG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTTDDIKNILRVLVELKDRKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVVE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ DID+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDIDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYRKV DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRKVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +D+DG E + CR G ++V ++DFID + Sbjct: 615 HVTDEVVYLSAIEEGKYKIGQANSKVDKDGILQGEFINCRVEGGNFVMVEPHEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR+ G S VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALNDGIVEQVDSNRIVIRA-IGQKTESAPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTS+HIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSVHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII VGAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ +++GPK K ++S+++ + Q WQF V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGQVSINGPKTVKTGQTITSEILKGLSKGQLWQFTVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E LK Y+ K L RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQLKGHYDGKKEALNKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQ+ ETHLGWA V Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQVLETHLGWASVN 1153 Query: 1148 LGKKIKSLINDYK-ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI L+ ++K + I ++ FL ++ G I + D+ ++ + GV Sbjct: 1154 LAKKIAGLVEEHKTKHASIEKIKKFLIELYGENI--NHILEKSDEEIISFCNEAAKGVYF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA E + MLR+A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVEDVKDMLRLAGQDLSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 ++Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KIYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|85858138|ref|YP_460340.1| DNA-directed RNA polymerase subunit beta [Syntrophus aciditrophicus SB] gi|109914401|sp|Q2LQ87|RPOB_SYNAS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|85721229|gb|ABC76172.1| DNA-directed RNA polymerase beta chain [Syntrophus aciditrophicus SB] Length = 1363 Score = 1576 bits (4080), Expect = 0.0, Method: Composition-based stats. Identities = 723/1364 (53%), Positives = 993/1364 (72%), Gaps = 15/1364 (1%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 RK FG+ EI+++P+LI++Q SY+ FL ++AP+ R N GLQ AFKSVFPI+ FSG Sbjct: 5 RKNFGRIEEILEVPNLIDIQTRSYETFLQEDVAPENRKNFGLQGAFKSVFPISDFSGKCS 64 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEFVSY+ ++DV++C+ + +TYA PLKI +RL+VFD D + K+I+DIKEQ IY G Sbjct: 65 LEFVSYKIGAVRYDVNECIQKGMTYAAPLKIVVRLVVFDTDRLSDQKNIRDIKEQEIYFG 124 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 ++PLMT+ GTF++ G +R++VSQLHRSPGI FDHDKG+ SGKL+Y+ RIIP +G W+D Sbjct: 125 EIPLMTEKGTFIVNGTERVIVSQLHRSPGIFFDHDKGKTLTSGKLIYSARIIPIRGSWLD 184 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAAD 253 +EFDSKD+++VRIDRRRK+PVT L A+G +E++L+ FY G+ + + Sbjct: 185 LEFDSKDLLYVRIDRRRKMPVTILLKAMGYSTEDLLNYFYDVEHIFCEGENFYAA--VDE 242 Query: 254 LMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIV 313 +VG K+ + DI+TGE + + G+++ +LK ++E+ V+ + + + L G +A DI+ Sbjct: 243 SLVGHKLYDDIRDINTGEILFKKGRRINKVILKRIREQRVERIKMDVEELPGRILATDIL 302 Query: 314 NGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDA 373 + ETGE+ + + ++ + IR++ ++ + +N IR+TL+ D+ + DA Sbjct: 303 DPETGEVLFHCNEALSAAGIDVVREKGIRELSVINLGEDLSNVSIRDTLLIDRMETPGDA 362 Query: 374 LLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRK 433 +++IYR +RP + T A+ FN LFF+++ YDLSTVGR KMN +L LD DV +RK Sbjct: 363 IIEIYRRLRPSNPPTPDTAQKFFNSLFFENESYDLSTVGRAKMNYKLRLDVSTDVTVLRK 422 Query: 434 EDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 EDI+A +K L+DL+NG + ++DDID+LGNRRVRSVGE+++NQYR+GL+RMER+IKE++S Sbjct: 423 EDIMAAVKYLIDLKNGVPECSVDDIDHLGNRRVRSVGELIENQYRIGLVRMERAIKEKMS 482 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 DI+++MP DL+N KPV + V EFF SSQLSQ + N LS ITH RRLSALG GG+ R Sbjct: 483 LQDIETMMPHDLVNVKPVSAVVSEFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTR 542 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT 611 RAG E+RDVHPTHYGRICP ET EG NIGL+ SL+++ARVN +GFIETPYR V +G+V Sbjct: 543 ERAGFEVRDVHPTHYGRICPVETPEGPNIGLIVSLSTYARVNEFGFIETPYRIVKEGRVL 602 Query: 612 NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQV 671 +V +L+A+EEEN+ IA A+ ++ DGSF +L+ R G+ + V +++ +D SP Q+ Sbjct: 603 PEVKFLTAIEEENQVIAPADQPVNHDGSFKGDLISARKGGDFVNVVPSEVNMVDVSPNQL 662 Query: 672 VSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR 731 VS+AA+LIPFLE+DD+NR LMG NMQRQAVPL++ E P VGTGME +VA+ SGA +VAKR Sbjct: 663 VSVAATLIPFLEHDDANRALMGSNMQRQAVPLMRPEIPLVGTGMERIVARDSGAVVVAKR 722 Query: 732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRN 791 +GIVE VDA RIVI+ + +GVDIY L+K+QRSNQ+TC NQ+ +V G VR+ Sbjct: 723 SGIVESVDASRIVIKCESAEKTDRDTGVDIYTLIKYQRSNQDTCFNQKAIVNKGQRVRKG 782 Query: 792 DIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMA 851 DIIADGP+TD G+LALG N++VAFM W GYN+EDS+L+SER+V ED++TSIHIEEFE MA Sbjct: 783 DIIADGPATDNGELALGHNVMVAFMSWGGYNYEDSILVSERIVKEDIYTSIHIEEFETMA 842 Query: 852 RDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEK 911 RDTKLG E+ITRDIPNV EE L+N+D+ GI+ +G V GDILVGKITPKGE+ ++ EEK Sbjct: 843 RDTKLGKEDITRDIPNVGEEALRNLDDSGIVRMGVSVKSGDILVGKITPKGETQLSSEEK 902 Query: 912 LLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDK 971 LLRAIFGEKA DVRDTSLRVP GV GTV+D ++F R G +K+ RS +E E I +L +D+ Sbjct: 903 LLRAIFGEKASDVRDTSLRVPPGVEGTVIDAKVFTRKGAEKDHRSQYIEDEAIAMLQKDR 962 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKG-------FKKSTVLSSDLISEYPRSQWWQF 1024 +DE I+ + + +L G+ + + KK +++ +++SE P W + Sbjct: 963 EDEIRIITEAVKKEVGTLLQGKQSGAKIVDPKRKKIYLKKGDIITPEILSEIPLHLWKEI 1022 Query: 1025 AV-QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 V DE+ +R V + ++E F K EK++ D++PPGV+++VKV++A+KR Sbjct: 1023 TVADDEETERAVGQMMANLYDKIEVVEAYFNEKTEKLKASDELPPGVIKMVKVYIAIKRK 1082 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 +Q+GDKMAGRHGNKG++SRILP EDMP+ KDG PVDIVLNPLGVPSRMNVGQI ETHLGW Sbjct: 1083 LQAGDKMAGRHGNKGVLSRILPEEDMPYFKDGRPVDIVLNPLGVPSRMNVGQILETHLGW 1142 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSG 1203 A GLG+K+ +++ Y+ LR L+ + + + + ++ + + + G Sbjct: 1143 AAKGLGEKLNDMLDSYQKGNQ---LRDELKGIYQSREFEKFVDGATEEETYQFVRKLRRG 1199 Query: 1204 VPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMV 1263 + VS+PVFDGA E I +ML++A+L +GQ+ILYDG TGEPFD+ +TVG IYMLKL+H+V Sbjct: 1200 IAVSSPVFDGATESDIRNMLKLANLPSTGQAILYDGRTGEPFDQEITVGMIYMLKLHHLV 1259 Query: 1264 SDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVV 1323 +K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDDV Sbjct: 1260 DNKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYSLQEFLTVKSDDVA 1319 Query: 1324 GRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 GRTR+YE+IV G +T E G PESFNVLVKE+Q+L L ++L Sbjct: 1320 GRTRIYEAIVKGENTSEPGLPESFNVLVKELQSLCLDVELIEEE 1363 >gi|91205968|ref|YP_538323.1| DNA-directed RNA polymerase subunit beta [Rickettsia bellii RML369-C] gi|122425304|sp|Q1RHD0|RPOB_RICBR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|91069512|gb|ABE05234.1| DNA-directed RNA polymerase beta chain [Rickettsia bellii RML369-C] Length = 1372 Score = 1575 bits (4079), Expect = 0.0, Method: Composition-based stats. Identities = 766/1358 (56%), Positives = 1021/1358 (75%), Gaps = 9/1358 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 RVRK FG + DIP+LIE+QK SY+ FL ++ ER N+GLQ+ S+FPI+ S Sbjct: 17 KRVRKNFGHINLVADIPNLIEIQKNSYEKNFLQLDTKDSERKNKGLQSILNSIFPISDPS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+Y LK+TLRL ++D+DE TG++ IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECTQRSLSYDSALKVTLRLSIWDIDEDTGSREIKGIKEQQ 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMG++PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ S KLLY+ R+IP +G Sbjct: 137 VYMGNIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSRKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KDII+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDIIYFRIDRKRKLYATTLLKAIGMSTEEIIKFYYDSVNYKVVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + + +++S L+D DTG ++++G+K+T L K +G+ + ++ L G Y+ Sbjct: 257 FMPSHI-TAHRLTSDLIDADTGNVLLKAGQKITPRLAKKYAGEGLNNILVSHKALIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + E+ EI + G++I + L I +I++I +L ++ + YIRNTL +DKN+ Sbjct: 316 SEDLKDPESDEILAKIGEMITVELLSVISDLKIKNISVLVINPQ-SGPYIRNTLFSDKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD ++YDLS VGR+KMN RL L+ D+ Sbjct: 375 DRESALFDIFRVLRPGEPANIEAAESLFYNLFFDPERYDLSEVGRIKMNSRLELNISDET 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++ KG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTTDDIKNILRVLVELKDRKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVVE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ DID+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDIDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYRKV DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRKVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +D+DG E + CR G ++V ++DFID + Sbjct: 615 HVTDEVVYLSAIEEGKYKIGQANSKVDKDGILQGEFINCRVEGGNFVMVEPHEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR+ S VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALNDGIVEQVDSNRIVIRA-IAQKTESAPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTS+HIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSVHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII VGAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ +++GPK K ++S+++ + Q WQF V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLVGQVSINGPKTVKTGQTITSEILKGLSKGQLWQFTVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E LK Y+ K L RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQLKGHYDGKKEALNKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQ+ ETHLGWA V Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQVLETHLGWASVN 1153 Query: 1148 LGKKIKSLINDYK-ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI L+ ++K + I ++ FL ++ G I + D+ ++ + GV Sbjct: 1154 LAKKIAGLVEEHKTKHASIEKIKKFLIELYGENI--NHILEKSDEEIISFCNEAAKGVYF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA E + MLR+A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVEDVKDMLRLAGQDLSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 +++RS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDDV GR Sbjct: 1272 IHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRI 1331 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 ++Y+SIV G + FE+G PESFNV++KE ++L L++ LE Sbjct: 1332 KIYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLE 1369 >gi|42524381|ref|NP_969761.1| DNA-directed RNA polymerase beta chain [Bdellovibrio bacteriovorus HD100] gi|39576590|emb|CAE80754.1| DNA-directed RNA polymerase beta chain [Bdellovibrio bacteriovorus HD100] Length = 1422 Score = 1574 bits (4076), Expect = 0.0, Method: Composition-based stats. Identities = 723/1384 (52%), Positives = 978/1384 (70%), Gaps = 21/1384 (1%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 RVRK F KN ++IDIP+LIE+QK+SY+ F+ ++ PD R + GL FKSVFPIT F+ Sbjct: 32 RVRKSFAKNKQVIDIPNLIELQKSSYEAFIQKDMDPDRRGDAGLNGVFKSVFPITDFNNT 91 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 A LEFVSY +P K+DVD+C R +T+A P+K+TLRLIVFDVDE T A+SI+D+KEQ +Y Sbjct: 92 ASLEFVSYTLEPAKYDVDECRQRGMTFAAPIKVTLRLIVFDVDEETEARSIRDVKEQEVY 151 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G++PLMT +G+F+I G +R+VVSQLHRSPG+ FDHD G+ + SGKL+Y+ R+IP +G W Sbjct: 152 LGEIPLMTANGSFIINGTERVVVSQLHRSPGVFFDHDGGKNNASGKLIYSARVIPYRGSW 211 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 +D EFD KD+IHVRIDRRRK PVT L ALG +SE++L FY +G L Sbjct: 212 LDAEFDQKDLIHVRIDRRRKFPVTILLKALGYNSEQLLEYFYDLDEVYVKGGKLFRKLDI 271 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 M G + + +VD TGE ++++G+++T ++K +K+ + L + + L G +A+ Sbjct: 272 E-RMSGQRALTDIVDPKTGEALVKAGRRITRAIVKKIKDLDITELDVLPEDLEGKVLAKP 330 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 +++ TGEI +A ++ ++ + I +++ D + Y+RNTL+ DK +++ Sbjct: 331 LIDESTGEIIADANAELNAAIIKRSIEAGIESFFMIFFDGLTVGPYLRNTLLVDKVSNKE 390 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL---NLDTPDDV 428 ++L++IY+ +RPG+ T A + F LFFD + YDLS VGR+K+N R + P Sbjct: 391 ESLVEIYKRLRPGEPPTLEAATTFFGRLFFDPETYDLSEVGRIKINHRFGISMDECPPSH 450 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 R + +DI++ IK L+DL+NG+G IDDID+LGNRRVRSVGE+L+NQYR+GL+RMER+I+E Sbjct: 451 RTLTHKDILSTIKTLIDLKNGRGVIDDIDHLGNRRVRSVGELLENQYRIGLVRMERAIRE 510 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S D++++MP DL+NAKPV + V EFF SSQLSQ + N LS ITH RRLSALG GG Sbjct: 511 RMSLQDVETMMPHDLVNAKPVNAVVKEFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGG 570 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 + R RAG E+RDVHPTHYGRICP ET EG NIGL++SL ++AR+N YGFIETPYRKV G Sbjct: 571 LTRDRAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLATYARINNYGFIETPYRKVEAG 630 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 +V+ D+ YLSA+EE +IA A + + R GE +V ++K+ +D SP Sbjct: 631 QVSKDINYLSALEEAGHHIAPAARDEAGNKAIQTATTITRRDGEYEIVDKDKVALMDVSP 690 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 Q+VSIAASLIPFLE+DD+NR LMG NMQRQAVPLL++ AP VGTG+E +VA+ SG +IV Sbjct: 691 SQLVSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRSRAPLVGTGVERLVARDSGTSIV 750 Query: 729 AKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEV 788 A+ GIVE+VDA RIVIR + VDIY L K+QR+NQNTC NQ+P+V VGD++ Sbjct: 751 AQNDGIVEEVDASRIVIRRF-AKGGELGANVDIYNLTKYQRTNQNTCFNQKPIVTVGDKI 809 Query: 789 RRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFE 848 + DIIADGPST+LG+LALG+N+LVAF PW GYNFEDS+LISER++ +DV+TSIHIEEFE Sbjct: 810 SKGDIIADGPSTELGELALGQNILVAFTPWQGYNFEDSILISERLLKDDVYTSIHIEEFE 869 Query: 849 VMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTP 908 +ARDTKLG EEITRDI NV EE LK++D GII +GAEV PG ILVGK+TPKGE+ ++P Sbjct: 870 CVARDTKLGKEEITRDIANVGEEALKDLDSSGIIRIGAEVRPGFILVGKVTPKGETQLSP 929 Query: 909 EEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLA 968 EEKLLRAIFGEKA DVRDTSLR PSGV GTV+D ++++R G D++ER + E+ L Sbjct: 930 EEKLLRAIFGEKAGDVRDTSLRAPSGVYGTVIDAQVYSREGADRDERLSLIIEEKKRKLE 989 Query: 969 RDKDDEQVILDRNIYSRLMEILCGQ-------NAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +D EQ ++ N S+L +IL G+ N K K ++ + P Sbjct: 990 KDLAVEQNVIKNNAISKLRDILVGKITTGVLLNEDGSQKLLNKGQEITEADLETVPFELL 1049 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 ++ + ++ V + ++ F KI++++ GD++PPGV+++VKV+VA+K Sbjct: 1050 NYIPLEQD-LEFQVNKIIDNARNQLDAVKLVFNEKIDRLRKGDELPPGVIKMVKVYVAIK 1108 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDK AGRHGNKG+VS++LP EDMP+L DGTPVD+VLNPLGVPSRMN+GQI E HL Sbjct: 1109 RKMQVGDKFAGRHGNKGVVSKVLPAEDMPYLADGTPVDMVLNPLGVPSRMNIGQILEVHL 1168 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA LGK++ + + + A R+ ++ + + K+ DD S+ + ++ K Sbjct: 1169 GWAAHNLGKQLGAHLEKWNAENA----RTEMKDIFSDSDISAKLDKADDASLKSMVQRMK 1224 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+ V TPVFDGA E + +L A + SG+S+L+DG TGEPF PVTVG +YMLKL+H Sbjct: 1225 HGIHVGTPVFDGARESDVKGLLAKAQVPSSGKSVLFDGRTGEPFTNPVTVGIMYMLKLHH 1284 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V +K++ARS G YSLV+QQPLGGK+ GGQRLGEMEVW I+AYGAAY LQE LT+KSDD Sbjct: 1285 LVEEKIHARSIGPYSLVSQQPLGGKAQFGGQRLGEMEVWAIEAYGAAYSLQEFLTVKSDD 1344 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 V GRTR+YESIV G + E G PESFNVLVKE+Q+L L+++L S ++ DF Sbjct: 1345 VAGRTRMYESIVKGENILEPGLPESFNVLVKELQSLALNVELMESD----ILRDQDEDFG 1400 Query: 1382 KCEL 1385 E+ Sbjct: 1401 DEEV 1404 >gi|88909122|sp|Q6MJ09|RPOB_BDEBA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1412 Score = 1574 bits (4075), Expect = 0.0, Method: Composition-based stats. Identities = 723/1384 (52%), Positives = 978/1384 (70%), Gaps = 21/1384 (1%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 RVRK F KN ++IDIP+LIE+QK+SY+ F+ ++ PD R + GL FKSVFPIT F+ Sbjct: 22 RVRKSFAKNKQVIDIPNLIELQKSSYEAFIQKDMDPDRRGDAGLNGVFKSVFPITDFNNT 81 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 A LEFVSY +P K+DVD+C R +T+A P+K+TLRLIVFDVDE T A+SI+D+KEQ +Y Sbjct: 82 ASLEFVSYTLEPAKYDVDECRQRGMTFAAPIKVTLRLIVFDVDEETEARSIRDVKEQEVY 141 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G++PLMT +G+F+I G +R+VVSQLHRSPG+ FDHD G+ + SGKL+Y+ R+IP +G W Sbjct: 142 LGEIPLMTANGSFIINGTERVVVSQLHRSPGVFFDHDGGKNNASGKLIYSARVIPYRGSW 201 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 +D EFD KD+IHVRIDRRRK PVT L ALG +SE++L FY +G L Sbjct: 202 LDAEFDQKDLIHVRIDRRRKFPVTILLKALGYNSEQLLEYFYDLDEVYVKGGKLFRKLDI 261 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 M G + + +VD TGE ++++G+++T ++K +K+ + L + + L G +A+ Sbjct: 262 E-RMSGQRALTDIVDPKTGEALVKAGRRITRAIVKKIKDLDITELDVLPEDLEGKVLAKP 320 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 +++ TGEI +A ++ ++ + I +++ D + Y+RNTL+ DK +++ Sbjct: 321 LIDESTGEIIADANAELNAAIIKRSIEAGIESFFMIFFDGLTVGPYLRNTLLVDKVSNKE 380 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL---NLDTPDDV 428 ++L++IY+ +RPG+ T A + F LFFD + YDLS VGR+K+N R + P Sbjct: 381 ESLVEIYKRLRPGEPPTLEAATTFFGRLFFDPETYDLSEVGRIKINHRFGISMDECPPSH 440 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 R + +DI++ IK L+DL+NG+G IDDID+LGNRRVRSVGE+L+NQYR+GL+RMER+I+E Sbjct: 441 RTLTHKDILSTIKTLIDLKNGRGVIDDIDHLGNRRVRSVGELLENQYRIGLVRMERAIRE 500 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S D++++MP DL+NAKPV + V EFF SSQLSQ + N LS ITH RRLSALG GG Sbjct: 501 RMSLQDVETMMPHDLVNAKPVNAVVKEFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGG 560 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 + R RAG E+RDVHPTHYGRICP ET EG NIGL++SL ++AR+N YGFIETPYRKV G Sbjct: 561 LTRDRAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLATYARINNYGFIETPYRKVEAG 620 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 +V+ D+ YLSA+EE +IA A + + R GE +V ++K+ +D SP Sbjct: 621 QVSKDINYLSALEEAGHHIAPAARDEAGNKAIQTATTITRRDGEYEIVDKDKVALMDVSP 680 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 Q+VSIAASLIPFLE+DD+NR LMG NMQRQAVPLL++ AP VGTG+E +VA+ SG +IV Sbjct: 681 SQLVSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRSRAPLVGTGVERLVARDSGTSIV 740 Query: 729 AKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEV 788 A+ GIVE+VDA RIVIR + VDIY L K+QR+NQNTC NQ+P+V VGD++ Sbjct: 741 AQNDGIVEEVDASRIVIRRF-AKGGELGANVDIYNLTKYQRTNQNTCFNQKPIVTVGDKI 799 Query: 789 RRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFE 848 + DIIADGPST+LG+LALG+N+LVAF PW GYNFEDS+LISER++ +DV+TSIHIEEFE Sbjct: 800 SKGDIIADGPSTELGELALGQNILVAFTPWQGYNFEDSILISERLLKDDVYTSIHIEEFE 859 Query: 849 VMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTP 908 +ARDTKLG EEITRDI NV EE LK++D GII +GAEV PG ILVGK+TPKGE+ ++P Sbjct: 860 CVARDTKLGKEEITRDIANVGEEALKDLDSSGIIRIGAEVRPGFILVGKVTPKGETQLSP 919 Query: 909 EEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLA 968 EEKLLRAIFGEKA DVRDTSLR PSGV GTV+D ++++R G D++ER + E+ L Sbjct: 920 EEKLLRAIFGEKAGDVRDTSLRAPSGVYGTVIDAQVYSREGADRDERLSLIIEEKKRKLE 979 Query: 969 RDKDDEQVILDRNIYSRLMEILCGQ-------NAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 +D EQ ++ N S+L +IL G+ N K K ++ + P Sbjct: 980 KDLAVEQNVIKNNAISKLRDILVGKITTGVLLNEDGSQKLLNKGQEITEADLETVPFELL 1039 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 ++ + ++ V + ++ F KI++++ GD++PPGV+++VKV+VA+K Sbjct: 1040 NYIPLEQD-LEFQVNKIIDNARNQLDAVKLVFNEKIDRLRKGDELPPGVIKMVKVYVAIK 1098 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R +Q GDK AGRHGNKG+VS++LP EDMP+L DGTPVD+VLNPLGVPSRMN+GQI E HL Sbjct: 1099 RKMQVGDKFAGRHGNKGVVSKVLPAEDMPYLADGTPVDMVLNPLGVPSRMNIGQILEVHL 1158 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA LGK++ + + + A R+ ++ + + K+ DD S+ + ++ K Sbjct: 1159 GWAAHNLGKQLGAHLEKWNAENA----RTEMKDIFSDSDISAKLDKADDASLKSMVQRMK 1214 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+ V TPVFDGA E + +L A + SG+S+L+DG TGEPF PVTVG +YMLKL+H Sbjct: 1215 HGIHVGTPVFDGARESDVKGLLAKAQVPSSGKSVLFDGRTGEPFTNPVTVGIMYMLKLHH 1274 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V +K++ARS G YSLV+QQPLGGK+ GGQRLGEMEVW I+AYGAAY LQE LT+KSDD Sbjct: 1275 LVEEKIHARSIGPYSLVSQQPLGGKAQFGGQRLGEMEVWAIEAYGAAYSLQEFLTVKSDD 1334 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 V GRTR+YESIV G + E G PESFNVLVKE+Q+L L+++L S ++ DF Sbjct: 1335 VAGRTRMYESIVKGENILEPGLPESFNVLVKELQSLALNVELMESD----ILRDQDEDFG 1390 Query: 1382 KCEL 1385 E+ Sbjct: 1391 DEEV 1394 >gi|328953165|ref|YP_004370499.1| DNA-directed RNA polymerase subunit beta [Desulfobacca acetoxidans DSM 11109] gi|328453489|gb|AEB09318.1| DNA-directed RNA polymerase subunit beta [Desulfobacca acetoxidans DSM 11109] Length = 1386 Score = 1573 bits (4074), Expect = 0.0, Method: Composition-based stats. Identities = 735/1388 (52%), Positives = 989/1388 (71%), Gaps = 20/1388 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 VF+ RK FGK IIDI +LIE+QK SY+ FL + P++R GLQ FKSV Sbjct: 1 MAEVFSPQKLYRKNFGKIERIIDISNLIEMQKESYNRFLQKDTPPEQRGEFGLQGVFKSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPIT +SGAA LEFV+Y F PK+D ++CL R +T+ P+K+T+RL+V+DV+ T +SI Sbjct: 61 FPITDYSGAASLEFVNYSFAEPKYDEEECLQRGMTFEAPMKLTVRLVVYDVESETKMQSI 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DIKEQ IY G +PLMT +GTF++ G +R++VSQLHRSPG+ DHD+GR SGKLLY+ Sbjct: 121 RDIKEQEIYFGTMPLMTDNGTFIVNGTERVIVSQLHRSPGLFIDHDRGRTHSSGKLLYSA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KDI++ RIDRRRK PVT L ALG +EE+L+ FY Sbjct: 181 RLIPMRGSWIDFEFDPKDILYARIDRRRKFPVTVLLKALGYSTEELLNFFYKTEKVFLDS 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + L+ KVS +VD TGE +++ KK+T L++ L++ GV+ L + Sbjct: 241 EGIEKKFNPEFLLQ-RKVSMDIVDPSTGELLVKKNKKITPELIRKLQKAGVERLSLMPGE 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA DI++ E GE+ I + + E+ L+ + IR+I +LY++ +N + +RNTL Sbjct: 300 IIGRVVAHDILDTENGEVLINCNEPVTEEKLDRLRQRRIREIDVLYIEGINVSPCLRNTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 DK ++A+ +IYR +RPG+ T VA + F+ LFF + YDLS VGR+K+N++L Sbjct: 360 AVDKTGSTREAIFEIYRKLRPGNPPTLEVAANFFDNLFFRPEYYDLSPVGRLKLNLKLKR 419 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + P + KEDI+ ++ L+ + +G IDDID+LGNRRVR+VGE+L+NQYR+GL+RM Sbjct: 420 EAPVTQSTLDKEDILFAVRELITQKELEGPIDDIDHLGNRRVRAVGELLENQYRIGLVRM 479 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+IKER+S +ID++MP DLINAKPV V EFF +SQLSQ + N LS ITH RRLS Sbjct: 480 ERAIKERMSLQEIDALMPHDLINAKPVSGVVKEFFGTSQLSQFMDQTNPLSEITHKRRLS 539 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+ SL+++ARVN +GFIETPY Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIVSLSTYARVNEFGFIETPY 599 Query: 603 RKVCDG--------KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 R V V+ + +LSA++E + IAQAN+ LD+D F +L+ R AGE I Sbjct: 600 RVVEKKEENGVWSVHVSRQIKFLSALDEGDNVIAQANAPLDQDSRFINDLISARQAGESI 659 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +V E++D++D SP Q+VS+AASLIPFLENDD+NR LMG NMQRQAVPLL P +GTG Sbjct: 660 MVRPEEVDYMDVSPSQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLTCTPPLIGTG 719 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E+VVA+ SG +VAKR+GIVE VD RIV+R+ GD S S VDIY+L KFQR+NQNT Sbjct: 720 LENVVARDSGVTLVAKRSGIVEVVDGTRIVVRAYNGDEGDSQSIVDIYKLTKFQRTNQNT 779 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C NQRP+VK GD V + IIADGP+T G+LALG+N++VAFMPW GYNFEDS+L+SER+ Sbjct: 780 CFNQRPIVKPGDRVEKGQIIADGPATAFGELALGKNVMVAFMPWGGYNFEDSILVSERIA 839 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 EDVFTS+HIEEFEV+ARDTKLG EEITRDIPNVSEE L N+DE GII +GAE+ PGDIL Sbjct: 840 KEDVFTSVHIEEFEVVARDTKLGKEEITRDIPNVSEEALANLDESGIIRIGAEIKPGDIL 899 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ ++PEEKLLRAIFGEKA DVRDTSLRVP G+ G ++D RIF+R G++K+E Sbjct: 900 VGKVTPKGETQLSPEEKLLRAIFGEKAGDVRDTSLRVPPGIEGIIIDARIFSRKGVEKDE 959 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF-------KKSTV 1007 RS ++E E I L +D+ DE I+ +++ RL E+L Q P +K + Sbjct: 960 RSRAIEAEAIAKLQKDQGDEISIITQSVSHRLKELLVNQTVFDIPDDITSASYILEKGVI 1019 Query: 1008 LSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMP 1067 ++ D++++ P W + + +++ +V+ L Y+ + ++F+ KI +++ D++P Sbjct: 1020 ITPDMVTKLPLHHWRNVSFDNPELEGSVDRLLESYQVQIQQVNNQFEEKINRLRKVDELP 1079 Query: 1068 PGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV 1127 PGV+++VKVF+AMKR + GDKMAGRHGNKG+VSRILP EDMP+ DGTPVDIVLNPLGV Sbjct: 1080 PGVIKMVKVFIAMKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYFADGTPVDIVLNPLGV 1139 Query: 1128 PSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISD 1187 PSRMNVGQ+ ETHLGWA LG++I+ LI+++ D+ +++ + + + Sbjct: 1140 PSRMNVGQVLETHLGWASRLLGQQIRRLIDEFY---DLDAVKNRIRALYNNPQVDAWLES 1196 Query: 1188 YDDDSVLRVAEQW-KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + + + E++ K G+ +++PVFDGA E I + L A + E G++ L+DG TGEPFD Sbjct: 1197 ATLEDIRQFWEKFHKEGMFMASPVFDGALESEIRACLTQAGVSEVGKAKLFDGRTGEPFD 1256 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 R VTVG +YM+KL+H+V DK++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYG Sbjct: 1257 RSVTVGTMYMMKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYG 1316 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQE LT+KSDDV GRTR+YE IV G E G PESFNVL++E+Q+L L+++L Sbjct: 1317 AAYSLQEFLTVKSDDVAGRTRMYEKIVKGQYDLEAGLPESFNVLIRELQSLALNVELLED 1376 Query: 1367 RTKNSAKM 1374 + A+ Sbjct: 1377 KESEVAEN 1384 >gi|33520000|ref|NP_878832.1| DNA-directed RNA polymerase subunit beta [Candidatus Blochmannia floridanus] gi|41017672|sp|Q7VRP7|RPOB_BLOFL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|33504346|emb|CAD83239.1| DNA-directed RNA polymerase, beta-subunit [Candidatus Blochmannia floridanus] Length = 1342 Score = 1572 bits (4070), Expect = 0.0, Method: Composition-based stats. Identities = 698/1363 (51%), Positives = 957/1363 (70%), Gaps = 21/1363 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL++AF+SV Sbjct: 1 MVFSYTEKKRIRKDFGKRPQVLDIPYLLSIQLGSFQKFVKKD----PEGQNGLESAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G A L ++ Y+ P FDV +C R +T+A PL++ L L++++ D +I Sbjct: 57 FPIKSYNGNAELRYLDYKLGEPVFDVKECQIRGMTFAAPLRVQLCLVIYERDGSAYN-TI 115 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K ++Q +YMG++PLMT +GTF+I GI+R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 116 KRTQQQEVYMGEIPLMTDNGTFIINGIERVVVSQLHRSPGVFFDSDKGKTHSSGKILYTA 175 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+PVT L AL +++IL+TF+ +VY + Sbjct: 176 RIIPYRGSWLDFEFDLKDNLFVRIDRRRKLPVTVLLRALDYTNDQILNTFFNTVVYEFKD 235 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G VS + D +E G+++TS + LK + + + + Sbjct: 236 DLLFMNLVPERL-RGETVSFDIKANDI--IYVERGRRITSKHINKLKADNIIKVEVPLNY 292 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G + +D ++ + GE+ + A I L + S I L+ + ++ YI TL Sbjct: 293 LMGKVIIKDYLDIKNGELIVAANTEISMDILHNLVKSGFNIIETLFSNDLDYGNYISETL 352 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D R DAL++IYRVMRPG+ T AE +F LFF ++YDLS VGR+K N L Sbjct: 353 RIDSTVTRFDALVEIYRVMRPGEPPTKEAAEYLFESLFFLEERYDLSDVGRMKFNRSLQR 412 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + K DII +IK L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 413 DDISGSGVLTKNDIIDVIKKLIDIRNGKGDVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 472 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D + PQDLINAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 473 ERAVKERLSLGDLDVLTPQDLINAKPISAAVREFFNSSQLSQFMDQNNPLSEITHKRRIS 532 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 533 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNKYGFLETPY 592 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+VCDGKV+ND+ YLSA+EE + IAQAN++L++DG F ++L+ CR GE L +++ID Sbjct: 593 RRVCDGKVSNDIHYLSAIEEGDFIIAQANTNLNKDGQFIDDLITCRNKGESGLFRKDQID 652 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP++++E P VGTGME VA Sbjct: 653 YMDVSTQQIVSVAASLIPFLEHDDANRALMGANMQRQAVPVIRSEKPLVGTGMERSVAVD 712 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG +VAKR G+V+ VDA RIVI ++ +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 713 SGVTVVAKRGGMVKYVDASRIVIHVNVNEISVEEAGIDIYNLKKYVRSNQNTCINQRPCV 772 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 ++G+ +++ D+IADGPSTDLG+LALG+NM +AFMPW+GYNFEDSML+SER+V ED FTSI Sbjct: 773 ELGELIKKGDVIADGPSTDLGELALGQNMRIAFMPWNGYNFEDSMLVSERVVQEDRFTSI 832 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPN+ E L +DE G++ +GAEV GDILVGKITPKG Sbjct: 833 HIQELSCISRDTKLGPEEITSDIPNIGETALSKLDEVGVVYIGAEVVGGDILVGKITPKG 892 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G+ GTV+DV+IF R GI K++R++++E Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGICGTVIDVQIFTRDGIKKDKRALNIELT 952 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ + +D +E I + ++ R+ +L G KK + + + R W Sbjct: 953 KLNQIKKDLGEELKIFESALFDRVYALLISS-------GVKK------ESLLDMNRCAWL 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++D Q + L QY K I E++ + +KI GD++ PG+L+VVKV++A+KR Sbjct: 1000 NLKLKDITKQNQLLQLSHQYLDLKRIFEEKISIQYQKITQGDELAPGILKVVKVYLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1060 QIQPGDKMAGRHGNKGVISKINPVEDMPYDEYGVPVDIVLNPLGVPSRMNIGQILETHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G +I ++ ++ + K+ ++ + D VLR+A+ KS Sbjct: 1120 MAAKGIGDQINLMLQQHQEINKLRKFIQKAYKLGVGVRQNIDLNTFSDLEVLRLAKNLKS 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E+ I +L+++ L SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1180 GMPIATPVFDGATEQEIKELLQLSGLPTSGQITLFDGCTGEVFERKVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 GRT++Y++I+ GN E G PESFNVL+KE+++L ++I+L++ Sbjct: 1300 NGRTKMYKNIIDGNHMMEPGMPESFNVLLKEIRSLAINIELDD 1342 >gi|1325955|emb|CAA91164.1| RNA polymerase beta subunit [Neisseria meningitidis] Length = 1389 Score = 1569 bits (4063), Expect = 0.0, Method: Composition-based stats. Identities = 674/1398 (48%), Positives = 931/1398 (66%), Gaps = 45/1398 (3%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P LI Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRENVLEVPFLIATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+ L F + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQNLGYFLRQRNVLFVF 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 KRCSNRFG-RRPSESETAKVDILD-KEGNVLVAKGKRITAKNIRDITLAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGVISPIPC 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 V K R+ A + IYR+MRP + T E +FN LFF D YDLS VGR+K N R Sbjct: 357 VRMKTAGRQAARVAIYRMMRP-EPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 415 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 416 QKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 475 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 476 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 535 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 536 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 595 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN LD DG+ Sbjct: 596 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANGDLDSDGNL 655 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 656 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRPLMGANMQRQA 715 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 L+ E P VGTG+E VA S AIVA+R +VE VDA R+VIR + + GVD Sbjct: 716 SACLRPEKPMVGTGIERSVAVDSATAIVARR-AVVEYVDANRVVIRVHDDEATAGEVGVD 774 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+ Sbjct: 775 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNV 834 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 N+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 835 NNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 894 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 895 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 954 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 955 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1014 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K +K Sbjct: 1015 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKK 1074 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 + GD++ PGV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVD Sbjct: 1075 LTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVD 1134 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG 1179 IVLNPLGVPSRMN+GQI E HLGWA G+G++I ++ + + G++ + L + Sbjct: 1135 IVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLSR----S 1190 Query: 1180 SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG------- 1232 E + D+ ++ +A + G ++PVFDGA E I ML +A E Sbjct: 1191 GKKEDLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDAEVEKLGF 1250 Query: 1233 -----QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 Q LYDG +GE FDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ Sbjct: 1251 NDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKA 1310 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++YE+IV G + G PES Sbjct: 1311 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESL 1370 Query: 1348 NVLVKEMQALGLSIDLEN 1365 NVLVKE+++LGL IDLE Sbjct: 1371 NVLVKEIRSLGLDIDLER 1388 >gi|27904547|ref|NP_777673.1| DNA-directed RNA polymerase beta chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340404|sp|Q89B20|RPOB_BUCBP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|27903944|gb|AAO26778.1| DNA-directed RNA polymerase beta chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 1343 Score = 1568 bits (4060), Expect = 0.0, Method: Composition-based stats. Identities = 687/1362 (50%), Positives = 973/1362 (71%), Gaps = 22/1362 (1%) Query: 5 VVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFP 64 R+RK FGK P+++DIP L+ +Q S+ F+ + GL++AF+S+FP Sbjct: 4 YSSTEKKRIRKDFGKRPKVLDIPYLLSIQLNSFQKFIKHD----PNGIHGLESAFRSIFP 59 Query: 65 ITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKD 124 I +++G + L++++Y+ P F+V +C R +TY+ PL++ LRL++++ T ++KD Sbjct: 60 IRSYNGNSELQYINYKLGQPIFNVKECQTRGMTYSSPLRVKLRLVIYEK--ETLDITVKD 117 Query: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRI 184 IKEQ +YMG++PLMT +GTF+I G +R+VVSQLHRSPG+ FD DKG+ SGK+LY RI Sbjct: 118 IKEQEVYMGEIPLMTTNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 177 Query: 185 IPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDF 244 IP +G W+D EFD KD + RIDRRRK+P++ L AL ++E+IL TF+ K ++ + Sbjct: 178 IPYRGSWLDFEFDPKDNLFFRIDRRRKLPISIILKALNYNTEQILDTFFKKNIFKFTENS 237 Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLC 304 L + G S + + I+ G+++T+ + LKEK + + + ++ L Sbjct: 238 ILMKLVP-HRLRGETASFDICI--DNKTYIKKGQRITARHINILKEKKIHTIKVPTEYLI 294 Query: 305 GLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVT 364 G A++ N +T EI + A ++ ++E+ ++E +I ++ + +++ YI TL Sbjct: 295 GKISAKNYFNKKTNEIIVSANTELNINIIKELKNNEYTNIETIFTNDLDHGPYISETLNI 354 Query: 365 DKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDT 424 D D+ AL++IYR+MRPG+ T AE++F LFF ++YDLS+VGR+K N L Sbjct: 355 DPTHDKLSALVEIYRMMRPGEPPTREAAENLFENLFFSEERYDLSSVGRMKFNRSLQKQN 414 Query: 425 PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 + + + DII++IK L+D+RNG G IDDID+LGNRRVRSVGEM +NQ+R+GL+R+ER Sbjct: 415 ITERGVLNQSDIISVIKKLIDIRNGHGEIDDIDHLGNRRVRSVGEMAENQFRIGLIRVER 474 Query: 485 SIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSAL 544 ++K+R+S D+D +MPQD+INAKP+ +A+ EFF SSQLSQ + N LS ITH RR+SAL Sbjct: 475 AVKDRLSLGDLDMLMPQDMINAKPISAAIKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 534 Query: 545 GQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604 G GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N+YGF+ETPYRK Sbjct: 535 GLGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNSYGFLETPYRK 594 Query: 605 VCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 + +GKVTN++ YLSA+EE N IAQAN++LDE G+F E+L+ CR GE L + +I+++ Sbjct: 595 IHNGKVTNEIKYLSAIEEGNFIIAQANTNLDETGAFVEDLITCRYKGESSLFNKNQINYM 654 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME VA SG Sbjct: 655 DVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGMERAVAVDSG 714 Query: 725 AAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 I+AKR GIV+ VDA RI+I+ + +++ +G+DIY L K+ RSNQNTC+NQ P + + Sbjct: 715 VTIIAKRGGIVQYVDASRIIIKVKKNEINSEEAGIDIYNLKKYTRSNQNTCINQIPCISL 774 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G+ V + +++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+LISE++V ED FT+IHI Sbjct: 775 GENVEKGNVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILISEKVVQEDRFTTIHI 834 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E ++RDTKLG EEIT DIPNV E L +DE GI+ +GAEVN GDILVGK+TPKGE+ Sbjct: 835 QELACISRDTKLGSEEITSDIPNVGEAALSKLDESGIVYIGAEVNGGDILVGKVTPKGET 894 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +TPEEKLLRAIFGEKA DV+D+SLRVP+GV GTV+DV+IF R G+ K++R++ +E Q+ Sbjct: 895 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVLGTVIDVQIFTRDGVKKDKRALEIEEMQL 954 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQF 1024 + +D +EQ + + +++++ L ++ D +++ P+S+ ++ Sbjct: 955 KQAKKDLTEEQKVFELGLFTQIKSTLINSG-------------MNIDQLNKIPKSELFKV 1001 Query: 1025 AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPI 1084 V + Q+ + L ++YE K + + KI GDD+ PGVL++VKV++A+KR I Sbjct: 1002 KVTNNLYQKKIHKLFLKYEELKKCFNKKLETTRNKITQGDDLAPGVLKIVKVYLAVKRHI 1061 Query: 1085 QSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWA 1144 Q GDKMAGRHGNKG++S+I P EDMP+ ++G PVD+VLNPLGVPSRMN+GQI ETHLG A Sbjct: 1062 QPGDKMAGRHGNKGVISKINPIEDMPYDQNGLPVDVVLNPLGVPSRMNIGQILETHLGLA 1121 Query: 1145 CVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGV 1204 GLG I +++ K+ +I + ++++ DD +L +A+ +K+G+ Sbjct: 1122 SKGLGNIIDTMLKQQKSILNIRKFIQKAFNLGNNTRQKTNLNNFSDDEILSLAKNFKNGI 1181 Query: 1205 PVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVS 1264 P+STPVFDGA E I ++L++ADL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+V Sbjct: 1182 PISTPVFDGAQESEIKALLKLADLPSSGQITLFDGRTGEKFERPVTVGYMYMLKLNHLVD 1241 Query: 1265 DKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVG 1324 DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV G Sbjct: 1242 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1301 Query: 1325 RTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 RT++Y++IV GN E G PESFNVL+KE+++L ++I+LEN Sbjct: 1302 RTKMYKNIVDGNYKMEPGMPESFNVLLKEIRSLAINIELENE 1343 >gi|297172929|gb|ADI23890.1| hypothetical protein [uncultured gamma proteobacterium HF4000_48J03] Length = 1371 Score = 1564 bits (4049), Expect = 0.0, Method: Composition-based stats. Identities = 701/1373 (51%), Positives = 973/1373 (70%), Gaps = 18/1373 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK +D+P+L+ +Q SY+ FL +I P++R N GL+AAF ++ Sbjct: 1 MTYSFTEKKRIRKDFGKQKSALDVPNLLLIQLDSYNVFLQKDINPEKRENTGLEAAFNTL 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA-KS 121 FPI +FS A LEFVSY + P F V +C R L+YA PL++ +L ++ + K Sbjct: 61 FPIESFSKNAKLEFVSYRLEEPMFSVRECQLRGLSYAAPLRVKTKLTTYNKETGKHTVKE 120 Query: 122 IKDIK----EQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 +K+IK +Y G++PLMT+ GTFVI G R++VSQLHRSPG+ FDHDKG SGK Sbjct: 121 VKNIKVSGDTTDVYFGEIPLMTEHGTFVINGTDRVIVSQLHRSPGVFFDHDKGA-QSSGK 179 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIV 237 LL++ R+IP +G W+D EFD+KD I RIDRRRK+PVT L AL + EEIL TF+ K Sbjct: 180 LLFSARVIPYRGSWLDFEFDAKDAIFARIDRRRKIPVTVILHALDLSDEEILDTFFEKDK 239 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK--F 295 YS ++ D + G + + ++ G + G LK LK GVK + Sbjct: 240 YSISKKDIKLKINP-DHLKGTVSDFDIKVGR--KLIVSKGNIVNVGHLKQLKNSGVKGAY 296 Query: 296 LGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN 355 L + ++ L +++D+++ ETGE+ A +++ +E + ++I++I +Y++ +++ Sbjct: 297 LTVPAEHLEDKIMSQDVIDQETGELLASANEILTADKIELLIANDIKEIETIYINDLDHG 356 Query: 356 AYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVK 415 +YI N+L D + + +AL++IYR+MRPG+ T +E++F LFF+ ++YDLS VGR+K Sbjct: 357 SYISNSLRIDPSSSKLEALIEIYRMMRPGEPPTKDSSENLFQNLFFNPERYDLSDVGRMK 416 Query: 416 MNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQY 475 N R+ + + KEDII ++K L+++RN K T+DDID+LGNRR+R+VGEM +N + Sbjct: 417 FNRRIGKKSDSGSSILSKEDIIDVLKTLINIRNSKDTVDDIDHLGNRRIRTVGEMTENAF 476 Query: 476 RLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRI 535 R+GL+R+ER++K+R+S V+ + +MP+DLIN+KPV +A+ EFF SSQLSQ + N LS I Sbjct: 477 RVGLIRVERAVKDRLSLVETEELMPRDLINSKPVSAAIKEFFGSSQLSQFMDQNNPLSEI 536 Query: 536 THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 H RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A+VN + Sbjct: 537 AHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAKVNKF 596 Query: 596 GFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 GF+ETPY+KV GKVT + YLSA++E IAQAN+ +D EL+ R E L Sbjct: 597 GFLETPYQKVVKGKVTKKIEYLSAIDESQYVIAQANTPIDAQNRLQGELISSRYNNEFSL 656 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 +P +KID++D SPKQ+VSIAASLIPFLE+DD+NR LMG NMQRQAVP L AE P VGTGM Sbjct: 657 MPVDKIDYMDVSPKQIVSIAASLIPFLEHDDANRALMGSNMQRQAVPTLLAETPLVGTGM 716 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC 775 E +VA SG I+AKR G+V+ VDA RIVI + + SGVDIY L K+ RSNQNTC Sbjct: 717 ERIVATDSGVTIIAKRGGVVDSVDASRIVIAVDDEETQSGESGVDIYSLTKYTRSNQNTC 776 Query: 776 VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835 +NQRPLVKV D++ D+IADG ST LG+LA+G+N+LVAFMPW+G+NFEDS+LISE+++ Sbjct: 777 INQRPLVKVRDKISIGDVIADGASTSLGELAIGQNLLVAFMPWNGFNFEDSILISEKVLK 836 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 ++ FT+IHIEE + +ARDTKLG EEIT DIPNV + L+ +DE GI +GAEV GDILV Sbjct: 837 DERFTTIHIEELQCIARDTKLGSEEITADIPNVGDAALRKLDESGIAYIGAEVVAGDILV 896 Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNER 955 GKITPKGE+ ++PEEKLLRAIFGEKA DV+DTSLRVPSG+ G V+DVR+F+R G++K++R Sbjct: 897 GKITPKGETQLSPEEKLLRAIFGEKASDVKDTSLRVPSGMDGAVIDVRVFSREGVEKDDR 956 Query: 956 SISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISE 1015 + ++E ++ + +D +D+Q I++ +IY+R+ ++L + A G KK+ +S D + + Sbjct: 957 ANTIEASDVDAVKKDLNDQQRIVEDDIYNRIEKLLLNKMAKVG----KKTKKISKDDLEK 1012 Query: 1016 YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075 R QW+ ++D+K +ES + + + + + + KI+ D++ PGVL++VK Sbjct: 1013 LNRDQWFGIKLKDKKKNSELESYYQRLQLLEEEFQGKLQAAKNKIEAADELAPGVLKMVK 1072 Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135 VF+A+KR IQ GDK+AGRHGNKG++SRI+P EDMP+++DGT VDIVLNPLGVPSRMNVGQ Sbjct: 1073 VFLAVKRRIQPGDKIAGRHGNKGVISRIVPVEDMPYMEDGTTVDIVLNPLGVPSRMNVGQ 1132 Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG--SHTEKISDYDDDSV 1193 + ETHLGWA LG KI+SL+ D + ++ FL K+ +G +S + D+ + Sbjct: 1133 VLETHLGWAAKELGVKIQSLLKD-NTGNQVKKIKDFLSKIYNSGAQGSKVNLSKFSDNEI 1191 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 + +A K+GVP++TPVFDGA E I +L +A L +GQ+ L DG TGE F RPVT+GY Sbjct: 1192 IELAHNLKAGVPMATPVFDGAHESEIKDLLELAGLPTTGQTELTDGRTGEIFARPVTIGY 1251 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ L+E Sbjct: 1252 MYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLRE 1311 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +LT KSDDV GRTR+Y+ IV G ETG PESFNVL+KE+++LGL+IDL + Sbjct: 1312 LLTYKSDDVQGRTRMYKQIVDGTHEVETGMPESFNVLMKEIRSLGLNIDLIET 1364 >gi|297183424|gb|ADI19557.1| hypothetical protein [uncultured gamma proteobacterium HF0770_27E13] Length = 1371 Score = 1563 bits (4047), Expect = 0.0, Method: Composition-based stats. Identities = 710/1373 (51%), Positives = 979/1373 (71%), Gaps = 18/1373 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK +D+P+L+ +Q SY+ FL +I P++R N GL+AAF ++ Sbjct: 1 MTYSFTEKKRIRKDFGKQKSALDVPNLLSIQLDSYNVFLQKDINPEKRKNTGLEAAFNTL 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA-KS 121 FPI +FS A LEFVSY + P F V + R L+YA PL++ +LI ++ + K Sbjct: 61 FPIESFSKNARLEFVSYRLEEPVFSVRESQLRGLSYAAPLRVKTKLITYNKETNKETVKE 120 Query: 122 IKDIKEQ----SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 +K+IKE +Y G++PLMT+ GTFVI G R++VSQLHRSPG+ FDHDKG SGK Sbjct: 121 VKNIKESGDTTDVYFGEIPLMTEHGTFVINGTDRVIVSQLHRSPGVFFDHDKG-VQSSGK 179 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIV 237 LL++ R+IP +G W+D EFD+KD I RIDRRRK+ VT L AL +EIL TF+ K Sbjct: 180 LLFSARVIPYRGSWLDFEFDAKDAIFARIDRRRKISVTIILHALDFSDKEILDTFFEKDK 239 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK--F 295 YS ++ D + G + + ++ G + LK LK+ G K + Sbjct: 240 YSISKKEIKLKINP-DHLKGTVSDFDIKVGR--KLIVGKGNMVNVRHLKQLKDSGKKGAY 296 Query: 296 LGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN 355 L + ++ L ++ D+++ ETGE+ + A +++ +E + +I++I +Y++ +++ Sbjct: 297 LTVPAEHLEDKIMSHDVIDQETGELLVSANEILTADKIELLIAKDIKEIETIYINDLDHG 356 Query: 356 AYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVK 415 +YI N+L D + + +AL++IYR+MRPG+ T +E++FN LFF+ ++YDLS VGR+K Sbjct: 357 SYISNSLRIDPSSSKLEALIEIYRMMRPGEPPTKDSSENLFNNLFFNPERYDLSEVGRMK 416 Query: 416 MNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQY 475 N R+ ++ + KEDII ++K L+++RNGK T+DDID+LGNRR+R+VGEM +N + Sbjct: 417 FNRRIGKNSDSGSSILSKEDIIDVLKTLINIRNGKDTVDDIDHLGNRRIRTVGEMTENAF 476 Query: 476 RLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRI 535 R+GL+R+ER++K+R+S V+ + +MP+DLIN+KPV +A+ EFF SSQLSQ + N LS I Sbjct: 477 RVGLVRVERAVKDRLSLVETEELMPRDLINSKPVSAAIKEFFGSSQLSQFMDQNNPLSEI 536 Query: 536 THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 H RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A+VN + Sbjct: 537 AHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAKVNKF 596 Query: 596 GFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 GF+ETPY+KV GKVT + YLSA++E IAQAN+++D EEL+ R E L Sbjct: 597 GFLETPYQKVVKGKVTKKIEYLSAIDESQYVIAQANTTIDAKNHLQEELISSRYNNEFSL 656 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 +P +KID+ID SPKQ+VSIAASLIPFLE+DD+NR LMG NMQRQAVP L AE P VGTGM Sbjct: 657 MPVDKIDYIDVSPKQIVSIAASLIPFLEHDDANRALMGSNMQRQAVPTLLAETPLVGTGM 716 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC 775 E VVA SG I+AKR G+V+ VDA RIVI + + SGVDIY L K+ RSNQNTC Sbjct: 717 ERVVATDSGVTIIAKRGGVVDSVDASRIVIAVDDEETQSGESGVDIYSLTKYTRSNQNTC 776 Query: 776 VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835 +NQRPLVKV D++ D+IADG ST LG+LA+G+N+LVAFMPW+G+NFEDS+LISE++V Sbjct: 777 INQRPLVKVRDKISVGDVIADGASTSLGELAIGQNLLVAFMPWNGFNFEDSILISEKVVK 836 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 ED FT+IHIEE + +ARDTKLG EEIT DIPNV + L+ +DE GI +GAEV GDILV Sbjct: 837 EDRFTTIHIEELQCIARDTKLGSEEITADIPNVGDAALRKLDESGIAYIGAEVVGGDILV 896 Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNER 955 GKITPKGE+ ++PEEKLLRAIFGEKA DV+DTSLRVPSG+ G V+DVRIF+R G++K++R Sbjct: 897 GKITPKGETQLSPEEKLLRAIFGEKASDVKDTSLRVPSGMDGAVIDVRIFSREGVEKDDR 956 Query: 956 SISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISE 1015 + ++E ++ + +D +D+Q I++ +IY+R+ ++L + A G +K+ +S D + + Sbjct: 957 ANTIEASDVDAVKKDLNDQQRIVEDDIYNRIEKLLLNKMAKVG----RKTKKISKDDLEK 1012 Query: 1016 YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075 R +W+ ++D+K +ES + + + + + K KI+ D++ PGVL++VK Sbjct: 1013 LNRDKWFGIKLKDKKKNSELESYYQRLQLLQEEFQGKLKAAKNKIEAADELSPGVLKMVK 1072 Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135 VF+A+KR IQ GDK+AGRHGNKG++SRI+P EDMP+++DGTPVDIVLNPLGVPSRMNVGQ Sbjct: 1073 VFLAVKRRIQPGDKIAGRHGNKGVISRIVPVEDMPYMQDGTPVDIVLNPLGVPSRMNVGQ 1132 Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG--SHTEKISDYDDDSV 1193 + ETHLGWA LG KI+SL+ D I ++ FL K+ +G +S + +D + Sbjct: 1133 VLETHLGWAAKELGAKIQSLLKD-NTGKKIKKIKDFLSKIYNSGAPGSKVNLSKFSEDEI 1191 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 + +A K GVP++TPVFDGA E I ++L +A+L +GQ+ L DG TG PFDRPVTVGY Sbjct: 1192 IELAHNLKDGVPMATPVFDGAHESEIKNLLELAELPVTGQTELIDGRTGAPFDRPVTVGY 1251 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ L+E Sbjct: 1252 MYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLRE 1311 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 +LT KSDDV GRTR+Y+ IV G + ETG PESFNVL+KE+++LGL+IDL + Sbjct: 1312 LLTFKSDDVQGRTRMYKQIVDGTNEVETGMPESFNVLMKEIRSLGLNIDLIDD 1364 >gi|319760673|ref|YP_004124611.1| DNA-directed RNA polymerase, beta subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039387|gb|ADV33937.1| DNA-directed RNA polymerase, beta subunit [Candidatus Blochmannia vafer str. BVAF] Length = 1345 Score = 1562 bits (4045), Expect = 0.0, Method: Composition-based stats. Identities = 689/1364 (50%), Positives = 951/1364 (69%), Gaps = 20/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + RVRK FGK P+++DIP L+ +Q S++ F+ ++ GL AAFKSV Sbjct: 1 MVYSYTEKKRVRKDFGKRPKVLDIPYLLSIQLDSFEKFINKDLN----GQYGLDAAFKSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTG-AKS 121 FPI +++G + L+++ Y P FDV +C R +T++ L++ L L+V++ D Sbjct: 57 FPIKSYNGNSELQYIDYTLGEPVFDVKECQARGVTFSASLRVQLCLVVYEKDGSGSCNVI 116 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 K I+EQ +YMG++PLMT +GTF+I GI+R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 117 AKKIQEQEVYMGEIPLMTNNGTFIINGIERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYT 176 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KD + VRIDRRRK+PVT L AL +++IL+ F+ +VY Sbjct: 177 ARIIPYRGSWLDFEFDLKDNLFVRIDRRRKLPVTVLLKALSYTNDQILNIFFDVVVYEVV 236 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 G+ W L D + G + DT ++ G+++T+ + LK + + I + Sbjct: 237 GNRWYMHLIP-DRLRGETALFEVRVNDT--VYVDKGRRITTQHINKLKFDNISKIEIPVE 293 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 L G + +D +N TG + + A I + L + S I +L+ + ++ YI T Sbjct: 294 YLLGKVLIKDYINSSTGALIVSANTEISYEILNNLIKSGFNFIEVLFSNDLDCGNYISET 353 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D R DAL++IYRVMRPG+ T AE +F+ LFF ++YDLS VGR+K N L Sbjct: 354 LRIDTTITRFDALVEIYRVMRPGEPPTKDAAEYLFSSLFFSEERYDLSNVGRMKFNRSLQ 413 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 ++ + + + K+DI+ +IK L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R Sbjct: 414 RNSIEGLGVLTKKDIVDVIKKLIDIRNGKGDVDDIDHLGNRRIRSVGEMAENQFRIGLVR 473 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+S D+ + PQDLINAKP+ +AV EFF SSQLSQ + N LS ITH RR+ Sbjct: 474 VERAVKERLSLGDVHMLSPQDLINAKPISAAVREFFNSSQLSQFMDQNNPLSEITHKRRI 533 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETP Sbjct: 534 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARANEYGFLETP 593 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV +G V N++ YLSA+EE + IAQAN++L+ G F ++ + CR GE L +++I Sbjct: 594 YRKVNNGVVGNNIHYLSAIEEGDFIIAQANTNLNFQGQFIDDFIICRNKGESGLFRKDQI 653 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D++D S +Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVPL+++E P VGTGME VA Sbjct: 654 DYMDVSTQQIVSVAASLIPFLEHDDANRALMGANMQRQAVPLIRSEKPLVGTGMERAVAV 713 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG +VA R G+V+ VD+ RI+I G+L+ SG+DIY L K+ RSNQNTC+NQRP Sbjct: 714 DSGVTVVANRGGVVKYVDSSRIIIHVNLGELNSEESGIDIYSLTKYIRSNQNTCINQRPC 773 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ V D+IADGPSTDLG+L+LG+NM +AFMPW+GYNFEDSML+SER+V ED FTS Sbjct: 774 VSLGERVSIGDVIADGPSTDLGELSLGQNMRIAFMPWNGYNFEDSMLVSERVVQEDRFTS 833 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E ++RDTKLG EEIT DIPNV E L +DE GI+ +GAEV G+ILVGKITPK Sbjct: 834 IHIQELICISRDTKLGSEEITADIPNVGETALSKLDESGIVYIGAEVIGGEILVGKITPK 893 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GV GTV+DV+IF R G++K++R++ +E Sbjct: 894 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVCGTVIDVQIFTRDGVNKDKRALQIES 953 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 ++ + +D ++E I + ++ R+ E+L + + + + R W Sbjct: 954 MKLNQVKKDLEEEFKIFESALFDRVYELLLNSG------------EVEEERLLKMERRFW 1001 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + D + + L QY KS+ E + + + +K+ GD++ PG+L+VVKV++A+K Sbjct: 1002 LKLELNDLVNRNQLFQLYNQYLDLKSLFEKKIEAQYQKVTQGDELAPGILKVVKVYLAVK 1061 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI ETHL Sbjct: 1062 RHIQPGDKMAGRHGNKGVISKINPVEDMPYDEYGVPVDIVLNPLGVPSRMNIGQILETHL 1121 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A G+G KI L+ +K + + + ++ D +L +A+ K Sbjct: 1122 GMAAKGIGDKINYLLQQHKEVYRLREFIQKAYDLGKGLRQNVNLDNFSDVEILELAKNLK 1181 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+P++TPVFDGA E+ I +L+++ L ESGQ L+DG TGE F+R VTVGY+YMLKLNH Sbjct: 1182 KGMPIATPVFDGATEQEIKDLLKLSGLPESGQITLFDGCTGEVFERQVTVGYMYMLKLNH 1241 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDD Sbjct: 1242 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDD 1301 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 V GRT++Y++I+ GN + E G PESFNVL+KE+++L ++I+LE Sbjct: 1302 VNGRTKMYKNIIDGNHSMEPGMPESFNVLLKEIRSLAINIELEE 1345 >gi|218779768|ref|YP_002431086.1| DNA-directed RNA polymerase, beta subunit [Desulfatibacillum alkenivorans AK-01] gi|226699394|sp|B8FEU1|RPOB_DESAA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|218761152|gb|ACL03618.1| DNA-directed RNA polymerase, beta subunit [Desulfatibacillum alkenivorans AK-01] Length = 1364 Score = 1562 bits (4045), Expect = 0.0, Method: Composition-based stats. Identities = 724/1360 (53%), Positives = 977/1360 (71%), Gaps = 12/1360 (0%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+RK FGK +I+DIP+LIE+Q+ SY FL M++ P++R GLQA F SVFPI FSG Sbjct: 10 RLRKSFGKIAKIVDIPNLIEMQRISYQRFLQMDVPPEKRETIGLQAVFHSVFPIRDFSGT 69 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 A LEFVSY F K+ V+DC+ R +TY VP++IT+RL+VFDVD+ G ++I+DIKEQ IY Sbjct: 70 ASLEFVSYRFGEIKYSVEDCVHRGMTYEVPIRITVRLVVFDVDKEKGIQNIRDIKEQEIY 129 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 G +PLMT+ GTFVI G +R+VVSQLHRS G+ FDHDKG++ SGK++Y RIIP +G W Sbjct: 130 FGTIPLMTEQGTFVINGTERVVVSQLHRSSGVFFDHDKGKSHASGKVIYTARIIPVRGSW 189 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 +D+E D KD++++RIDRRRK P T A G +E++L+ FY + A Sbjct: 190 IDMEIDPKDVLYIRIDRRRKFPATLLFKAFGYSTEDLLNYFYQTEKLTLTPKTLFKEFDA 249 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 L G + S ++ D+ E +++ G+ T +K++ + G++ + I + L +A Sbjct: 250 KTL-RGQRASITVKMPDSDEVIVKKGRLFTQRAVKTMAQAGIEKVAILQEDLEDKVLARR 308 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 +++ +TGE+ A IDE +LE + + ++ ILY +R L+ DK + R+ Sbjct: 309 VLDPKTGEVLYPANHEIDEATLEAMRDAGVQKFEILYSAPGTGGDSVRKALLLDKVESRE 368 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +AL++IYR +RP + ST VA+ + LFF YDLS VGR+K+NMRL LDTP +V+ + Sbjct: 369 EALVEIYRRLRPSNPSTVEVAKDFIDQLFFRPSHYDLSAVGRMKLNMRLGLDTPVEVKTL 428 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 R+EDI+ K LVDL++ +G +DDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER+S Sbjct: 429 RREDILLTAKTLVDLKDSQGAVDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMS 488 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 +ID++MP DLIN KPV + V EFF +SQLSQ + N LS +TH RRLSALG GG+ R Sbjct: 489 LQEIDALMPNDLINPKPVSAVVKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTR 548 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT 611 RAG E+RDVHP+HYGRICP ET EG NIGL+ SL+++ARVN +GF+ETPYR V +G+ T Sbjct: 549 ERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLSTYARVNEFGFVETPYRVVTEGQAT 608 Query: 612 NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQV 671 ++ YLSAMEE++ IAQAN+ LDE+G F V R GE +V +E + +D SP Q+ Sbjct: 609 KEIKYLSAMEEKDLPIAQANAPLDEEGFFINPTVSSRVEGELTIVKKEDVKLMDISPNQL 668 Query: 672 VSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR 731 VS+++S+IPFLENDD+NR LMG NMQRQAVPLL EAP +GTG+E VVA+ SG +VAKR Sbjct: 669 VSVSSSMIPFLENDDANRALMGSNMQRQAVPLLATEAPLIGTGLERVVARDSGVTLVAKR 728 Query: 732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRN 791 G V VDA RIV++ + D V IY L KF RSNQNTC NQRP+VK+G EV+ Sbjct: 729 DGKVVAVDASRIVLQHEDERKDRMDKQVTIYNLSKFTRSNQNTCFNQRPIVKLGQEVKAG 788 Query: 792 DIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMA 851 DIIADGP+T+ G+LALGRN+ VAF+PW GYNFEDS+L+SER+V + VFTS+HIEEFEV++ Sbjct: 789 DIIADGPATENGELALGRNVTVAFLPWGGYNFEDSILVSERLVRDGVFTSVHIEEFEVVS 848 Query: 852 RDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEK 911 RDTKLG EEITRDIPNV EE LKN+D+ GI+ +GAEV PGDILVGKITPKGE+ ++PEEK Sbjct: 849 RDTKLGKEEITRDIPNVGEEALKNLDDSGIVRLGAEVRPGDILVGKITPKGETQLSPEEK 908 Query: 912 LLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDK 971 LLRAIFGEKA DV+DTSLRVP GV G VVD ++F R G++K++R+ +E E+I L +D+ Sbjct: 909 LLRAIFGEKAGDVKDTSLRVPPGVEGVVVDAKVFARRGVEKDDRTRLIEDEEIAALEKDR 968 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-----KSTVLSSDLISEYPRSQWWQFAV 1026 DDE I++ + S+L+ I+ GQ A + K K K ++++++ + P + + Sbjct: 969 DDELKIMEDTVRSKLITIVLGQEATAPVKKGKAVLIPKGQPITAEMLEDCPLAPLEALVL 1028 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 +DE V L Y + ++ F+ ++ + Q GDD+PPGV+++VK++VAMKR + Sbjct: 1029 KDEDHSERVHELLEIYREQRESVQMSFEEQVNRYQKGDDLPPGVIKMVKIYVAMKRRLSV 1088 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG+VS ILP ED+P+ ++GTPVD+VLNPLGVPSRMNVGQI E HLG A Sbjct: 1089 GDKMAGRHGNKGVVSCILPQEDLPYFENGTPVDMVLNPLGVPSRMNVGQILEIHLGRAAK 1148 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG +I++L+ + K + LR ++++ + ++++ + +L VA Q+K GV + Sbjct: 1149 SLGDQIEALLEEQK----LDGLRQKMQEIFSSD--ADEVAGLTEQELLEVAGQYKRGVHM 1202 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA E+ I +L A + SGQ++LYDG TGE F +TVG +YMLKL+H+V DK Sbjct: 1203 ATPVFDGAKEDEITDLLSSAGVSPSGQAVLYDGRTGERFKGEITVGTMYMLKLHHLVDDK 1262 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDD+VGRT Sbjct: 1263 IHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDMVGRT 1322 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 R+YE IV G + E G PESFNVLVKE+Q+LGL + L Sbjct: 1323 RMYEKIVKGQNVLEPGMPESFNVLVKELQSLGLEMSLIEE 1362 >gi|269469118|gb|EEZ80666.1| DNA-directed RNA polymerase, beta subunit [uncultured SUP05 cluster bacterium] Length = 1360 Score = 1562 bits (4045), Expect = 0.0, Method: Composition-based stats. Identities = 674/1365 (49%), Positives = 948/1365 (69%), Gaps = 8/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+R FG I+ PDL+ +Q S++ F+ + + GL F+SV Sbjct: 1 MAYSFTEKKRIRNNFGSRESILTEPDLLAIQIDSFNGFIQAG--EKNKKDVGLHGVFQSV 58 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS- 121 FPITA +G A +E+V YE PKF+V +C R +T+A L++ L L++FD + T K Sbjct: 59 FPITAVNGYAEIEYVDYELQEPKFNVKECKLRGVTFASTLRVKLNLVLFDKNGSTLKKKR 118 Query: 122 -IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +K I E+ +Y+G LPLMT+ GTFVI G +R+VVSQLHRSPG+ F+HDKG+ SGK+L+ Sbjct: 119 RVKQIIEEDVYLGQLPLMTETGTFVINGTERVVVSQLHRSPGVIFEHDKGKTHSSGKILF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + R+IP +G W+D EFD + ++ RIDRRRK+PVT+ L A+G++ EIL TF+ K+ Sbjct: 179 SSRVIPYRGSWLDFEFDHHEHLYARIDRRRKLPVTTLLRAMGLNGSEILDTFFGKVNVKL 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + LSA L G ++ V+E G+++T+ K L++ VK + Sbjct: 239 KAKSCDVGLSAEKL-RGVIAEFDIISGKD--VVVEKGRRITAKHTKILEKSKVKSINAPL 295 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L ++ED+++ ETGEI A VI E+ LE + ++++ I ILY++ AYI + Sbjct: 296 EYLLDKVISEDLIDKETGEILFAANTVISEEVLEALGTNKVKKIEILYINESEGGAYISD 355 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D+ + +A + IY VMRPG+ +T +FN LFF +D+YDLS VGR+K+N RL Sbjct: 356 TLRLDETQTELEARMSIYHVMRPGEPATEDAVNLLFNNLFFKNDRYDLSKVGRMKLNRRL 415 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 + + + +DII+++K+L++++NG ++DD+D L NRRVR++GEM++NQ+R+GL+ Sbjct: 416 GIKSETGEHVLTNDDIISVLKLLINIKNGNDSVDDVDTLANRRVRAIGEMIENQFRIGLV 475 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+E++++E ++ + D + PQDLIN+KPV +AV EFF SSQLSQ + VN LS +TH RR Sbjct: 476 RVEKAVREGLNLAETDELTPQDLINSKPVSAAVREFFGSSQLSQFMDQVNPLSGVTHKRR 535 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVHP+HYGR+CP ET EG NIGL+++L +A+ N YGF+ET Sbjct: 536 ISALGPGGLTRERAGFEVRDVHPSHYGRLCPIETPEGPNIGLINTLAVYAKTNNYGFLET 595 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PY+ V DGKVT++++Y+SA++E IAQAN+++ G + L+ CR E +LV E Sbjct: 596 PYQVVKDGKVTDEIIYVSAIDELEHTIAQANAAVSSKGQLMDNLIPCRRKNEFVLVNSED 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + ID KQ+ S+AASLIPFLE+DD+NR LMG NMQRQAVP+L+AE P VGTG+E VVA Sbjct: 656 VTLIDIDSKQISSVAASLIPFLEHDDANRALMGSNMQRQAVPVLRAEKPLVGTGIERVVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 S + AK G+VE VDA RIVIR GVDIY L K+ RSNQNTC+NQ+P Sbjct: 716 TDSRVCVTAKHGGVVEAVDASRIVIRVDSKQAKAGELGVDIYNLTKYSRSNQNTCINQKP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV GD+V D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+LISER+V ED +T Sbjct: 776 LVNTGDKVAIGDVLADGPSTDLGELALGQNMKIAFMPWNGYNFEDSILISERVVQEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 +IHIEE +RDTKLGPEEIT DIPNVSE L +DE G++ VGA V GDILVGK+TP Sbjct: 836 TIHIEELTAYSRDTKLGPEEITADIPNVSESALAKLDEVGVVYVGARVKGGDILVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 K E+ ++PEEKLLRAIFGEKA +V+D+SLR+ + SG V+DV++F R ++K+ R++S++ Sbjct: 896 KSETVLSPEEKLLRAIFGEKANNVKDSSLRIGASKSGVVIDVQVFTRDRVEKDSRALSID 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 +++ + +D DDE I+D +IY R+ L G G K L++ + S Sbjct: 956 EDRLAKIRKDIDDEFGIIDGDIYRRVRLKLSGNTVTKGVSNIKAGDKLNAKTMKPLDNSD 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 + V+D V + V +L Q + + + F+ + KI+ G ++PPGV+++VKV+VA Sbjct: 1016 IAKLKVEDAAVNKEVAALVKQAKAKQVEFDKFFEEERAKIEEGAELPPGVMKMVKVYVAT 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 ++ +Q GDKMAGRHGNKG++SR+ P EDMP+L+DG+ VD+VLNPLGVPSRMNVGQ+ E H Sbjct: 1076 RKTLQVGDKMAGRHGNKGVISRVSPIEDMPYLEDGSTVDVVLNPLGVPSRMNVGQVLEVH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LG+A GLG KI ++ D + + +R+FL+KV + E + + D+ ++ +A Sbjct: 1136 LGYAAKGLGHKIAVML-DEQKKTMVKEIRAFLDKVYNSYGKKEDFNSFSDEEIIELARNL 1194 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++TPVFDG E+ I S+L++ADL ESGQ LYDG TGE FDR VTVGY++MLKLN Sbjct: 1195 RGGVPMATPVFDGIKEDDIKSLLKLADLPESGQEQLYDGRTGEAFDRLVTVGYMHMLKLN 1254 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTG YSLVTQQPL GK+ GGQR GEMEVW ++AYGAA+ L+EMLT+KSD Sbjct: 1255 HLVDDKMHARSTGPYSLVTQQPLSGKAQFGGQRFGEMEVWALEAYGAAHTLREMLTVKSD 1314 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV GR ++Y+SIV G + E+ PESFNVLVKE+++LG+ ++LE Sbjct: 1315 DVAGRAKMYKSIVDGVNLTESVMPESFNVLVKEIRSLGIDVELEQ 1359 >gi|45644665|gb|AAS73053.1| predicted DNA-directed RNA polymerase beta subunit [uncultured marine gamma proteobacterium EBAC20E09] Length = 1332 Score = 1561 bits (4042), Expect = 0.0, Method: Composition-based stats. Identities = 704/1346 (52%), Positives = 968/1346 (71%), Gaps = 16/1346 (1%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 +D+P+LIE Q SY FL ++APD+R +GL+ F+++FPI + SG A LE+VSYE Sbjct: 1 MDLPNLIETQTKSYAEFLQADVAPDKRKKQGLEEVFQTLFPIKSVSGNAALEYVSYELGK 60 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 +DV +CL + L+Y+ PL+I ++L++FD D + K +KDIKE ++MG++PLMT+D + Sbjct: 61 NTYDVQECLIQGLSYSAPLRIKVKLVLFDRD--SNFKEVKDIKEGEVFMGEVPLMTEDAS 118 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 F+I G +R+VVSQLHRSPG+ +DHDKG+ SGK+LY+ RIIP +G W+D EFD KDI+ Sbjct: 119 FIINGTERVVVSQLHRSPGVFYDHDKGKTHSSGKVLYSARIIPYRGSWLDFEFDPKDILF 178 Query: 204 VRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 RIDRRRK+P T L AL M +EEILS FY + +++ D L L G + Sbjct: 179 SRIDRRRKIPATIMLRALDMGTEEILSEFYEEELFTLDKDTVKVELVPERL-RGETLPVD 237 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 + + +E+GK++T+ +K L + ++ + L G +++DI N ETGE+ Sbjct: 238 IKVK--SKVYVEAGKRITARHIKELTNSKASQISLSDEFLLGKVLSKDIFNTETGEVLFS 295 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 A IDE+ LE+I + +++I LY++ ++ YI NTL D +R +AL++IYR+MRP Sbjct: 296 ANTEIDEQVLEDIKSNNLKEIKCLYINELDKGPYISNTLRADPTTNRLEALVEIYRMMRP 355 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP-DDVRHIRKEDIIAIIKI 442 G+ T AE++F LFF+ ++YDLS VGR+K N RL LD ++ + K+DII ++K Sbjct: 356 GEPPTKDSAETLFTNLFFNDERYDLSEVGRMKFNRRLRLDENKENPHILDKKDIIEVMKG 415 Query: 443 LVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQD 502 +V++R+G +DDID+LGNRRVRSVGEM NQ+R+GL+R+ER+++ER+S+ + D + PQD Sbjct: 416 IVNIRDGHDIVDDIDHLGNRRVRSVGEMTANQFRVGLIRVERAVRERLSNAEADELGPQD 475 Query: 503 LINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVH 562 LINAKPV +A+ EFF SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVH Sbjct: 476 LINAKPVTAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVH 535 Query: 563 PTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEE 622 PTHYGR+CP ET EG NIGL++S S++R N YGFIETPYRKV +GKVT++++YLSA++E Sbjct: 536 PTHYGRVCPIETPEGPNIGLINSFASYSRTNQYGFIETPYRKVTNGKVTDEIIYLSAIDE 595 Query: 623 ENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFL 682 IAQAN LD++ F ++LV R A E L+ ++ID +D SP+QVVSIAASLIPFL Sbjct: 596 AEHVIAQANVMLDKNNRFIDDLVAVRHANEFELMSPDRIDLMDVSPQQVVSIAASLIPFL 655 Query: 683 ENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIR 742 E+DD+NR LMG NMQRQAVP+L++E P VGTG+E+VVA+ SG IVA+ +G+VE VDA R Sbjct: 656 EHDDANRALMGSNMQRQAVPVLRSEKPLVGTGLETVVARDSGVCIVARNSGVVESVDASR 715 Query: 743 IVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDL 802 IV+R + S + D+Y L+K+ RSNQNTC+NQRP+VKVGD V+ DI+ADGPS D Sbjct: 716 IVVRVTDK---KSKTASDVYNLIKYTRSNQNTCINQRPIVKVGDTVKAGDILADGPSVDN 772 Query: 803 GDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEIT 862 G+LALG+N+ +AFMPW+GYNFEDS+LISE++ ED FTSIHI+E +ARDTKLG EEIT Sbjct: 773 GELALGQNIRIAFMPWNGYNFEDSILISEKVAREDRFTSIHIQEIVCIARDTKLGSEEIT 832 Query: 863 RDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAV 922 DIPNV E L +DECGI+ VGAEV PGDILVGKITPKGE+ ++PEEKLLRAIFGEKA Sbjct: 833 ADIPNVGEGSLNKLDECGIVYVGAEVEPGDILVGKITPKGETQLSPEEKLLRAIFGEKAS 892 Query: 923 DVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI 982 DV+DTS R S GTV+ V +F R G++K+ER++++E++ ++ +D DDE +++R Sbjct: 893 DVKDTSQR--SSSKGTVIGVEVFTRDGMEKDERTLAIEQDHLDQSKKDADDEAAVVERAT 950 Query: 983 YSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQY 1042 RL E+L V G G KK +L+S+ + S + + E +E + Y Sbjct: 951 KRRLSELLKSNKVVKG-NGVKKGEILTSEKLDSLKISDIFSIRIAKEATNNIIEETETSY 1009 Query: 1043 ETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSR 1102 + ++ RF+ K KI G D+ PGV+++VKV++A+KR IQ GDKMAGRHGNKG++S Sbjct: 1010 KQFIKDIKSRFEEKKSKIIRGHDLAPGVIKIVKVYLAIKRRIQPGDKMAGRHGNKGVISE 1069 Query: 1103 ILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKAN 1162 I+P EDMP+ + G P+DIVLNPLGVPSRMNVGQI ETH+G A G+G KI ++ K N Sbjct: 1070 IMPVEDMPYDESGNPIDIVLNPLGVPSRMNVGQILETHMGSAAKGIGDKIDLML---KEN 1126 Query: 1163 GDISPLRSFLEKVIGTGS-HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINS 1221 + L+ +L+K+ + + E I +++ + +A + G+P++TPVFDGA E I Sbjct: 1127 AKPAELKDYLDKLYNKNAANKEDIQSFNNTEINELANNLRKGLPIATPVFDGAKESEIKE 1186 Query: 1222 MLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQ 1281 +L++ADL ESGQ L+DG TG FD PVTVGY+YM+KLNH+V DK++ARSTGSYSLVTQQ Sbjct: 1187 LLKLADLPESGQITLFDGRTGNKFDSPVTVGYMYMIKLNHLVDDKMHARSTGSYSLVTQQ 1246 Query: 1282 PLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFET 1341 PLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV GRT++Y++IV G + Sbjct: 1247 PLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVSGRTKMYKNIVDGTYEMDA 1306 Query: 1342 GTPESFNVLVKEMQALGLSIDLENSR 1367 PESFNVL KE+++LG++I+L+ + Sbjct: 1307 NVPESFNVLSKEIKSLGINIELDEEK 1332 >gi|218886550|ref|YP_002435871.1| DNA-directed RNA polymerase subunit beta [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226699396|sp|B8DLM7|RPOB_DESVM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|218757504|gb|ACL08403.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1372 Score = 1556 bits (4028), Expect = 0.0, Method: Composition-based stats. Identities = 686/1367 (50%), Positives = 938/1367 (68%), Gaps = 14/1367 (1%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K FGK P + IP L+ +Q SY FL +A + + +EGL+ F+SVFPI F+ A L Sbjct: 6 KKFGKIPVSLGIPHLLNLQVDSYVKFLQEGLA-ERKTDEGLEGVFRSVFPIEDFNRTASL 64 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 E+VSY+ PKFD +C+ + LTY P++I +RL+V+DVD+ +G ++I+DIKEQ IY G Sbjct: 65 EYVSYDIGEPKFDQAECISKGLTYEAPIRIKVRLVVYDVDDDSGNRTIRDIKEQDIYFGT 124 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 LPLMT+ GTF+I G +R++V+QL RSPGI F+HD G+ S K+LY+CR+IP +G W+D Sbjct: 125 LPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKTHSSRKVLYSCRVIPMRGSWLDF 184 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 +FD KDI++VRIDRRRK+P T A+GM +IL FY K Y D F D+ Sbjct: 185 DFDHKDILYVRIDRRRKMPATILFKAMGMTKTDILDYFYKKEFYRISADGRVFWEVQKDM 244 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 + + D G +++GK +T + + E G++ + + +D L GL++A+D+VN Sbjct: 245 FRKDSAFADIAGPD-GTVFVKAGKPITKRAWRQICEAGLETIEVAADTLDGLFLADDVVN 303 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 TGE+ EA D + E + + I +PIL+ ++ ++ +R+TLV DK D++ A Sbjct: 304 PATGEVLAEAADEVTPGVQERLREAGIDRLPILHTKGIDTSSSLRDTLVLDKTADKEAAQ 363 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 ++IYR +RP T +AES F+ LF +D YDLS VGR K+N RL LD ++R + E Sbjct: 364 VEIYRRLRPSSPPTPEIAESFFDNLFRSADYYDLSPVGRYKLNQRLGLDQSLELRVLTDE 423 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DI+ I++L+ L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S + Sbjct: 424 DILTAIRVLLHLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSLQE 483 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 + ++MP DLIN KPV + + EFF +SQLSQ + N+LS +TH RRLSALG GG+ R RA Sbjct: 484 VSTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNALSEVTHKRRLSALGPGGLTRERA 543 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVH +HYGRICP ET EG NIGL+ SLT++A+VN YGFIETPY + D K+T +V Sbjct: 544 GFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYAKVNDYGFIETPYHVIRDTKMTGEV 603 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 VYL A E IAQAN+ D +G +E V R G+ ++ PRE++ +D SP Q+VSI Sbjct: 604 VYLDASREHGEVIAQANAPFDAEGKLADEYVTTRVKGDVLMSPREEVTLMDVSPSQMVSI 663 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 +A+LIPFLE+DD+NR LMG NMQRQAVPLL+ E P VGTGME VA+ SGA I+A+ GI Sbjct: 664 SAALIPFLEHDDANRALMGSNMQRQAVPLLQCEKPLVGTGMEGPVAQDSGACIIAEGPGI 723 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 V DA RI++ G L P GV Y L KF +SNQN+C Q+P G V + DI+ Sbjct: 724 VRYADADRIIVSYENG-LYPERGGVRAYDLQKFHKSNQNSCFGQKPTCHPGQIVAKGDIL 782 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGP + G+LALG+N++VAFMPW GYNFEDS+LISER V ED FTS+HIEEFEV+ARDT Sbjct: 783 ADGPGIEDGELALGKNLVVAFMPWCGYNFEDSILISERTVKEDTFTSVHIEEFEVVARDT 842 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEITRDIPNV E+ L+N+D GII +GA V P DILVGKITPKGE+ +TPEEKLLR Sbjct: 843 KLGPEEITRDIPNVGEDMLRNLDGSGIIRIGANVKPDDILVGKITPKGETQLTPEEKLLR 902 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFG+KA DV++TSL+VP G+ GTV++V++FNR +K+ER+ +E ++ L R + D Sbjct: 903 AIFGDKARDVKNTSLKVPPGIEGTVIEVKVFNRRSGEKDERARLIEEYELGRLDRKEQDH 962 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL-------SSDLISEYPRSQWWQFAVQ 1027 L +LM ++ G+ + G KK V+ +++++++ P + + Sbjct: 963 IRGLGDATRVKLMAVVEGKQIATTLAGKKKGEVIAEAGASVTAEMLADVPLKKLSGL-FK 1021 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 + +V V++L Y+ + + +++K K+ GDD+PPGV+++VKV++A+KR + G Sbjct: 1022 NREVNEAVDALLESYDQQVQFISNIYESKRGKVTEGDDLPPGVIKMVKVYIAVKRKLSVG 1081 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VS ILP EDMPF DG PVDIVLNPLGVPSRMN+GQI ETHLGWA Sbjct: 1082 DKMAGRHGNKGVVSCILPAEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWAAKE 1141 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +G+++ ++ + N + LR+ +++ + + + DD+ + G+ Sbjct: 1142 MGRQLAEML---ERNDPLKALRNEVKRAFDSPAIDSLVDSMDDEDFRASVAKLGRGIVTK 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA EE I S L A++DE G+++LYDG TGE F VT G +YMLKL+H+V +K+ Sbjct: 1199 TPVFDGAAEEEIWSWLVRANIDEDGKTVLYDGRTGERFHNRVTTGVMYMLKLHHLVDEKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY+LQE LT+KSDDV GR + Sbjct: 1259 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 +YE IV G++ E G PESFNVLVKE+ +LGL + L K K Sbjct: 1319 MYEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVTLHQEEGKKRPKR 1365 >gi|303247797|ref|ZP_07334066.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio fructosovorans JJ] gi|302490881|gb|EFL50780.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio fructosovorans JJ] Length = 1368 Score = 1553 bits (4022), Expect = 0.0, Method: Composition-based stats. Identities = 684/1362 (50%), Positives = 927/1362 (68%), Gaps = 14/1362 (1%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K FGK + + IP L+ +Q SY+ FL +I P R + GL+ F+SVFPI F+ A L Sbjct: 6 KNFGKIVKTLTIPHLLNLQIDSYELFLQKDIPPTSREDAGLEGVFRSVFPIEDFNRTASL 65 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 E+VSYE PK+DV +C+ + LTY PL+I +RL+V+DVDE T ++I+DIKEQ IY G Sbjct: 66 EYVSYEIGEPKYDVPECIVKGLTYEAPLRIKVRLVVYDVDEETENRTIRDIKEQVIYFGT 125 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 +PLMT+ GTF+I G +R++V+QL RSPGI F+HD G++ S K+LY+CR+IP +G W+D Sbjct: 126 VPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKSHTSRKVLYSCRVIPMRGSWLDF 185 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 ++D KDI++VRIDRRRK+P T A+GM +IL FY + G F + Sbjct: 186 DYDHKDILYVRIDRRRKMPATILFKAMGMSRVDILRYFYEIEHFFLEG-SRVFRPVLPEF 244 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 K + + D D G+ ++ K +T + + E G++ + I L G ++AEDI + Sbjct: 245 YRKEKAYAEVRDTD-GKVIVGVDKPITKRSWRLMLEAGIEKIEIDPTTLTGQFLAEDIAD 303 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 TGE+ EA D + +E++ + I D+P+L+ ++ ++ IR+TLV DK D A Sbjct: 304 PATGEVLAEAADELTPDLVEKLKDAGIADLPVLHTRGIDTSSSIRDTLVLDKTTDTISAQ 363 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 ++IYR +RP T +A + F LF + D YDLS VGR K+N RL +D P D R + + Sbjct: 364 VEIYRRLRPSSPPTPEIAANFFENLFRNPDYYDLSPVGRYKLNARLKIDQPLDFRTLAND 423 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DI+ +K L L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S + Sbjct: 424 DILKAVKHLTFLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSLQE 483 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 + ++MP DLIN KPV + + EFF +SQLSQ + N+LS +TH RRLSALG GG+ R RA Sbjct: 484 VATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNALSEVTHKRRLSALGPGGLTRERA 543 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVH +HYGRICP ET EG NIGL+ SLT+ ++VN +GFIETPYR V +G+VT++V Sbjct: 544 GFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTHSKVNDFGFIETPYRVVREGRVTDEV 603 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 VYL A E + IA AN+ LD +G F +V R G+ I+ P E+I +D SP Q+VS+ Sbjct: 604 VYLDATREIDEVIAGANAELDAEGHFIHPVVGARIRGDLIMTPPEQITLMDISPSQIVSV 663 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 +A+LIPFLE+DD+NR LMG NMQRQAVPLL+ E P VGTGME VAK SGA ++A+ G Sbjct: 664 SAALIPFLEHDDANRALMGSNMQRQAVPLLRCEQPLVGTGMEGPVAKDSGACLLAEGPGY 723 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 V DA R+V+ +GD+ ++ G Y L+K +SNQNTC Q P V+VG V + D++ Sbjct: 724 VHYADAERVVVCY-DGDVGAASGGAKTYELLKHHKSNQNTCFGQVPRVRVGQHVEKGDVL 782 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGP G+LALG+N+LVAFMPW GYN+EDS+LISE+ V +D FTS+HIEEFEV+ARDT Sbjct: 783 ADGPGIRDGELALGKNLLVAFMPWCGYNYEDSILISEKAVKDDTFTSVHIEEFEVVARDT 842 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEITRDIPNV EE L ++DECGII +GA V P DI+VGKITPKGE+ +TPEEKLLR Sbjct: 843 KLGPEEITRDIPNVGEEMLNDLDECGIIRIGARVAPDDIMVGKITPKGETQLTPEEKLLR 902 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFG+KA DV++TSL+VP G+ GTV+DVR+FNR +K++R+ +E ++ + + Sbjct: 903 AIFGDKARDVKNTSLKVPPGIEGTVIDVRVFNRRSGEKDDRTRQIEDFELARIDVKEGQH 962 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV-------LSSDLISEYPRSQWWQFAVQ 1027 + N+ RL I+ G+ KG KK+ V L+ +L+ + P + Sbjct: 963 IDAIADNLRRRLWPIVSGKAVFQTIKGPKKNEVLLEANHPLTQELLDQLPVKKLSGI-FA 1021 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 ++ V L Y+ ++ + K EK+ GDD+PPGV+++VKV+VA+KR + G Sbjct: 1022 SKETNEAVAELLDDYDRHIHFVKGVYDQKREKVTEGDDLPPGVIKMVKVYVAVKRKLNVG 1081 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VS ILP EDMPF +G PVDIVLNPLGVPSRMN+GQI ETHLGWA + Sbjct: 1082 DKMAGRHGNKGVVSCILPEEDMPFFANGRPVDIVLNPLGVPSRMNIGQIMETHLGWAGME 1141 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG+++ L+ + + LR+ + V I D+ + + K G+ Sbjct: 1142 LGRQLSELV---ASGKPMETLRAEAKAVFSEPETVAMIDGMSDEELRVALKSLKKGIVAK 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E+ + L+ A L E+G+ LYDG TGE F RPVTVG +YMLKL+H+V +K+ Sbjct: 1199 TPVFDGATEDEMWGWLKQAGLPENGKVTLYDGRTGEAFHRPVTVGCMYMLKLHHLVDEKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA+Y+LQE LT+KSDDV GR + Sbjct: 1259 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASYLLQEFLTVKSDDVGGRVK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 +YE IV G++ E G PESFNVLVKE+ +LGL +DL K Sbjct: 1319 MYEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVDLIQDEKK 1360 >gi|220904901|ref|YP_002480213.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254765285|sp|B8J1A8|RPOB_DESDA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|219869200|gb|ACL49535.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 1378 Score = 1553 bits (4022), Expect = 0.0, Method: Composition-based stats. Identities = 691/1378 (50%), Positives = 938/1378 (68%), Gaps = 18/1378 (1%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIA-PDERPNEGLQAAFKSVFPITAFSGAAM 73 K FGK + IP L+ +Q SY+ FL + + RP+EGL+ F +VFPI F+ A Sbjct: 6 KQFGKIKISLPIPHLLNLQIDSYEKFLQEGVPEAERRPDEGLEGVFHTVFPIEDFNKTAS 65 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEFVSYE PK+D +C+ + LTY P++I +RL+V+D DE +G ++I+DIKEQ IY G Sbjct: 66 LEFVSYEIGEPKYDQAECISKGLTYEAPMRIKVRLVVYDADEASGNRTIRDIKEQDIYFG 125 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 LPLMT+ GTF+I G +R++V+QL RSPGI F+HD G+ S K+LY+CR+IP +G W+D Sbjct: 126 TLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMRGSWLD 185 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAAD 253 +FD KDI++VRIDRRRK+P T A+GM E+IL FY + Y F + Sbjct: 186 FDFDHKDILYVRIDRRRKMPATILFKAMGMSKEQILDYFYTQETYRLEERNTIFWEVRKE 245 Query: 254 LMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIV 313 L + +VD + G ++++GK +T + + E G++ + + D L G+++A D+ Sbjct: 246 LYRKDNAYADIVDSE-GNVIVKAGKPITKRSWRLICEAGIEAIEMRPDTLDGMFLAGDVA 304 Query: 314 NGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDA 373 + +TGE+ EA D I L+ + + I + +L+ + ++ IR+TL+ D+ D+ A Sbjct: 305 DPKTGELLAEAADEITPGLLDRMRDAGINRVSVLHTKGNDTSSSIRDTLMLDRIPDQLKA 364 Query: 374 LLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRK 433 +IYR +RP T +A S F+ LF + D YDLS VGR K+N RL+LD P D+R + Sbjct: 365 QEEIYRRLRPSSPPTAEIAASFFDNLFRNPDYYDLSPVGRYKLNQRLSLDEPSDLRTLTD 424 Query: 434 EDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSV 493 DI+ IK+LV L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S Sbjct: 425 NDILTAIKVLVHLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKERMSLQ 484 Query: 494 DIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARAR 553 +I ++MP DLIN KPV + + EFF +SQLSQ + NSLS +TH RRLSALG GG+ R R Sbjct: 485 EISTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGLTRER 544 Query: 554 AGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTND 613 AG E+RDVH +HYGRICP ET EG NIGL+ SLT+FA+VN YGFIETPY V +G+VT++ Sbjct: 545 AGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTFAKVNDYGFIETPYHVVREGRVTDE 604 Query: 614 VVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVS 673 V++L A E ++ +AQAN+ LDE G+ +E V R GE + R+++ +D SP Q+VS Sbjct: 605 VLHLDASREGDQVVAQANALLDEQGNLVDEFVTVRVKGEVEMRHRDEVTLMDISPSQMVS 664 Query: 674 IAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAG 733 I+A+LIPFLE+DD+NR LMG NMQRQAVPLL++E P VGTGME VA+ SGA IVA G Sbjct: 665 ISAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPLVGTGMEVDVARDSGACIVAPADG 724 Query: 734 IVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDI 793 +E VDA RIV+ EGD+ GV Y L+K+ +SNQN+C Q+P G V++ I Sbjct: 725 KIEYVDADRIVVAY-EGDVYKKQGGVRAYDLLKYHKSNQNSCFGQKPSCHPGQIVKKGQI 783 Query: 794 IADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARD 853 +ADGP D G+LALG+N++VAFMPW GYN+EDS+LISER V EDVFTSIHIEEFEV+ARD Sbjct: 784 LADGPGIDDGELALGKNLVVAFMPWCGYNYEDSILISERTVKEDVFTSIHIEEFEVVARD 843 Query: 854 TKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLL 913 TKLGPEEITRDIPNVSE+ L+N+DE GII +GA V P DILVGKITPKGE+ +TPEEKLL Sbjct: 844 TKLGPEEITRDIPNVSEDMLRNLDESGIIRIGAAVKPDDILVGKITPKGETQLTPEEKLL 903 Query: 914 RAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDD 973 RAIFGEKA DV++TSL+VP GV GT++DV++FNR +K++R++++E +L + + D Sbjct: 904 RAIFGEKARDVKNTSLKVPPGVEGTIIDVKVFNRRSGEKDDRTLAIEGHDTAVLDQKEAD 963 Query: 974 EQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV-------LSSDLISEYPRSQWWQFAV 1026 L + L+ + G+ + G KK V L+ ++++ P + Sbjct: 964 HMRALTDRTRALLIPHVVGKQVAASLPGKKKGEVLVEAGAALTEEMLASLPVKKLSGL-F 1022 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 + ++V V + Y+ L + +K EK+ GDD+PPGV+++VKV +A+KR + Sbjct: 1023 KSKEVNDAVAEILKPYDQQVDYLHAIYDSKREKVTEGDDLPPGVIKMVKVHIAIKRKLSV 1082 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG+VS ILP EDMPF DG PVDIVLNPLGVPSRMN+GQI ETHLGW Sbjct: 1083 GDKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWGAK 1142 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG+++ L++ + + LR ++ + + + + DD+ + ++G+ Sbjct: 1143 ELGRQLAELLD---SGAAMQVLRDEVKSIFSSDDINALVDEMDDEEFKASVSKLRNGIVT 1199 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 TPVFDGA EE I S + A L G++ LYDG TGE F VT G +YMLKL+H+V +K Sbjct: 1200 KTPVFDGATEEEIWSWMERAGLANDGKTTLYDGRTGEAFKNRVTTGVMYMLKLHHLVDEK 1259 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY+LQE LT+KSDDV GR Sbjct: 1260 IHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRV 1319 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAK----MEEIPDF 1380 ++YE IV G++ E G PESFNVLVKE+ +LGL++ L K K M E D Sbjct: 1320 KMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQEEGKKKPKRTGYMREREDE 1377 >gi|71905954|ref|YP_283541.1| DNA-directed RNA polymerase subunit beta [Dechloromonas aromatica RCB] gi|88909132|sp|Q47JB0|RPOB_DECAR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|71845575|gb|AAZ45071.1| DNA-directed RNA polymerase subunit beta [Dechloromonas aromatica RCB] Length = 1427 Score = 1551 bits (4015), Expect = 0.0, Method: Composition-based stats. Identities = 691/1432 (48%), Positives = 940/1432 (65%), Gaps = 75/1432 (5%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q S+ FL +AP++R NEGLQAAF S+ Sbjct: 1 MTYSFTEKKRIRKSFAKRASVLDVPYLLATQLQSFKDFLQDEVAPEKRKNEGLQAAFTSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A LEFVSY P FDV +C R LT+A L+ +RL++ D + ++ Sbjct: 61 FPIVSHSGNARLEFVSYMLGEPAFDVTECQQRGLTFASSLRARVRLVIMDREAPD---TV 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT +G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 118 KEVKEQEVYMGEIPLMTTNGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD + R+DRRRK+PVT+ L A+GM SEEIL F+ + Sbjct: 178 RVIPYRGSWLDFEFDPKDTLFFRVDRRRKMPVTTLLKAIGMSSEEILDQFFDFDTFLLSK 237 Query: 243 DFWCFPLSAA----------------------------------------------DLMV 256 D F L D ++ Sbjct: 238 DKVEFTLVPERLRGEVARFDFVGPDGVLIVPKDKRITAKHIRDIGAAAIKQIVVPEDFLI 297 Query: 257 GAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG--ITSDCLCGLYVAEDIVN 314 G V+ ++VD TGE V + ++T LL L+E + + T++ G +++ + Sbjct: 298 GRVVAKNIVDKATGEVVANANDEITETLLAKLREAEITTVETLYTNELDRGAFISNTLRA 357 Query: 315 GETG-----EIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 ET + I E EE + + +D Sbjct: 358 DETATRQAARVAIYRMMRPGEPPTEEAVEILFNGLFYSDERYDLSGVGRMKFNRRLARQD 417 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD--- 426 + L + + + + ++AE+ L D L G M L + Sbjct: 418 VIEYKLMVKGLASKAEAALKNLAEASGFALSAIQDLVSLMPFGARAMVENSTLSEVEALA 477 Query: 427 -------------DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKN 473 + + DI+ +IKILV+LRNG+G IDDID+LGNRRVRSVGE+ +N Sbjct: 478 AKLKPLGANVEVREQLTLSPRDIVEVIKILVELRNGRGEIDDIDHLGNRRVRSVGELAEN 537 Query: 474 QYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLS 533 Q+R GL+R+ER++KER+S + D++MP DLINAKP+ +A+ EFF SSQLSQ + N LS Sbjct: 538 QFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPISAAIKEFFGSSQLSQFMDQTNPLS 597 Query: 534 RITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVN 593 ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL FA+VN Sbjct: 598 EITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFAQVN 657 Query: 594 AYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEE 653 +YGFIET YRKV +G+VT+D+ YLSA+EE N +AQAN+SLD +G +++LV CR GE Sbjct: 658 SYGFIETAYRKVNNGQVTSDIEYLSAIEEGNYVVAQANASLDANGRLSDDLVTCREKGET 717 Query: 654 ILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGT 713 IL ++ ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGT Sbjct: 718 ILAEPGRVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGT 777 Query: 714 GMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQN 773 G+E VA SG A+VA R G+V+ VDA R+V+R + + GVDIY L+K+ RSNQN Sbjct: 778 GIERTVAVDSGTAVVALRGGMVDYVDAARVVVRVNDDETIAGEVGVDIYNLVKYTRSNQN 837 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 T +NQRP+V+VGD + + D++ADG STD G+LALG+NML+AFMPW+GYNFEDS+LISER+ Sbjct: 838 TNINQRPMVRVGDHIAKGDVVADGASTDKGELALGQNMLIAFMPWNGYNFEDSILISERV 897 Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDI 893 V+ED +TSIHIEE V+ARDTKLGPEEITRDI ++ E L +D+ GI+ +GAEV GD+ Sbjct: 898 VAEDRYTSIHIEELTVVARDTKLGPEEITRDIASLGEAQLSRLDDSGIVYIGAEVEAGDV 957 Query: 894 LVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKN 953 LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV++F R GI+++ Sbjct: 958 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGIAGTVIDVQVFTREGIERD 1017 Query: 954 ERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLI 1013 +R+ ++ E + D D+ I++R+ ++R+ ++ G+ A GPK K TV+ + Sbjct: 1018 KRAQAIIDEHLRHYKLDLADQMRIVERDAFARVERLITGKKANGGPKKLAKGTVIDKVYL 1077 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRV 1073 W+ + D++ + +E +K E ++ + F+ K +K+ GD++PPGV ++ Sbjct: 1078 DSMDPHHWFDIRLADDEAAQQLEQVKDGLEQARKDFDIAFEGKRKKLTQGDELPPGVQKM 1137 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA+KR +Q GDKMAGRHGNKG+VSRILP EDMP ++DG+PVDIVLNPLGVPSRMNV Sbjct: 1138 VKVYVAVKRRLQPGDKMAGRHGNKGVVSRILPVEDMPHMEDGSPVDIVLNPLGVPSRMNV 1197 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQI E HLG A GLG KI +++ +A +R FL+++ + +E + + +D V Sbjct: 1198 GQILEVHLGLAAKGLGHKIGAML---RAQSSAKEVRGFLDQIYNSSGKSENLDELNDVEV 1254 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 L +AE K GVP +TPVFDGA EE I +ML MA + SGQ L+DG TGE F+R VTVGY Sbjct: 1255 LEMAENLKGGVPFATPVFDGAKEEEIKAMLAMAGMPSSGQMTLFDGRTGEAFERKVTVGY 1314 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 ++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQE Sbjct: 1315 MHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQE 1374 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 MLT+KSDDV GRT+VYE+IV G E G PESFNVLVKE+++L + IDLE Sbjct: 1375 MLTVKSDDVNGRTKVYENIVKGEHRIEAGMPESFNVLVKEIRSLAIDIDLER 1426 >gi|78358037|ref|YP_389486.1| DNA-directed RNA polymerase subunit beta [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|88909135|sp|Q30X05|RPOB_DESDG RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|78220442|gb|ABB39791.1| DNA-directed RNA polymerase subunit beta [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 1375 Score = 1551 bits (4015), Expect = 0.0, Method: Composition-based stats. Identities = 681/1363 (49%), Positives = 933/1363 (68%), Gaps = 15/1363 (1%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K FGK + IP L+ +Q SY FL A P+EGL+ F+SVFPI F+ A L Sbjct: 6 KKFGKIEVTLPIPHLLNLQVDSYKKFLQEGAAALA-PDEGLEGVFRSVFPIEDFNRTASL 64 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 E+VSYE PK+D +C+ + LTY P++I +RL+V+DVDE + ++I+DIKEQ IY G Sbjct: 65 EYVSYEIGEPKYDQAECISKGLTYEAPIRIKVRLVVYDVDEDSENRTIRDIKEQDIYFGT 124 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 LPLMT+ GTF+I G +R++V+QL RSPGI F+HD G+ S K+LY+CR+IP +G W+D Sbjct: 125 LPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDAGKTHSSRKVLYSCRVIPMRGSWLDF 184 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 ++D KDI++VRIDRRRK+P T A+GM +IL FY K Y+ D DL Sbjct: 185 DYDHKDILYVRIDRRRKMPATILFKAMGMSRSDILEYFYKKEYYTLEDDGRLMWELDKDL 244 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 + + D + G+ + ++GK T + + E G+ + + D + G+++AEDIV+ Sbjct: 245 YRKDVAYADVADGE-GKVIAKAGKPYTKRSWRLMLEAGIPAVEVAPDYIAGMFLAEDIVD 303 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 TGE+ EA D I ++ + I+ +P+L+ + ++ IR+TL+ DK D++ A Sbjct: 304 EATGEVLAEAADEITLDLIDRLRECSIKRVPVLHTKGSDTSSSIRDTLLLDKTADQEQAR 363 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 ++IYR +RP T +A + F LF + D YDLS VGR K+N RL L T + R + E Sbjct: 364 VEIYRRLRPSSPPTPEIASTFFENLFRNPDYYDLSPVGRYKLNQRLGLTTTQE-RVLTDE 422 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DI+ I++L L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S + Sbjct: 423 DILTAIRVLNHLKDTHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSLQE 482 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 + ++MP DLIN KPV + + EFF +SQLSQ + N+LS +TH RRLSALG GG+ R RA Sbjct: 483 VSTLMPHDLINPKPVQAVLKEFFGTSQLSQFMDQTNALSEVTHKRRLSALGPGGLTRERA 542 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVH +HYGRICP ET EG NIGL+ SLT++A+VN +GFIETPYR V DG+VT++V Sbjct: 543 GFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYAKVNDFGFIETPYRVVRDGQVTDEV 602 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 YL A E +AQAN+ LD D F +E V R G+ I+ PRE++ +D SP Q+VSI Sbjct: 603 KYLDASSEHGEVVAQANARLDGDHRFVDEFVTTRVRGDVIMSPREEVTLMDISPSQMVSI 662 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 +A+LIPFLE+DD+NR LMG NMQRQAVPLL++ P VGTGME+ VA+ SGA I+A+ G+ Sbjct: 663 SAALIPFLEHDDANRALMGSNMQRQAVPLLRSTKPIVGTGMEADVARDSGACIIAEADGV 722 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 V DA RIV+ EGDL P T GV Y L K+ +SNQ++C Q+PLV G +R+ D++ Sbjct: 723 VRYADADRIVVSY-EGDLYPRTGGVRSYDLQKYHKSNQSSCFGQKPLVSRGQVIRKGDVL 781 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGP + G+LALG+N++VAFMPW GYNFEDS+LISER V EDVFTS+HIEEFEV+ARDT Sbjct: 782 ADGPGIEDGELALGKNLVVAFMPWCGYNFEDSILISERCVKEDVFTSVHIEEFEVVARDT 841 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEITRDIPNV E+ L+N+D GII +GA V P DILVGKITPKGE+ +TPEEKLLR Sbjct: 842 KLGPEEITRDIPNVGEDMLRNLDGSGIIRIGANVKPDDILVGKITPKGETQLTPEEKLLR 901 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFGEKA DV++TSL+VP G+ GTV+DV++FNR +K+ER+ ++E ++ L + + D Sbjct: 902 AIFGEKARDVKNTSLKVPPGIEGTVIDVKLFNRRSGEKDERTRNIEDYELARLDQKEKDH 961 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL-------SSDLISEYPRSQWWQFAVQ 1027 L +L ++ G+ G G KK V+ +++++ P + + Sbjct: 962 IRALTETTREKLAPVVVGKQLAYGLAGQKKGEVIAEAGQTLTAEMLEGLPVKKLSGL-FK 1020 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 + V+ Y+ + +++K EK+ GDD+PPGV+++ KV +A+KR + G Sbjct: 1021 SKDTNEAVQQALESYDRQIEFINAMYESKREKVTEGDDLPPGVIKMAKVHIAVKRKLNVG 1080 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VS ILP EDMPF DG PVDIVLNPLGVPSRMN+GQI ETHLGWA Sbjct: 1081 DKMAGRHGNKGVVSCILPQEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWAAKE 1140 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 +G+K+ ++ + D++ +R ++ V + + + ++ + DD++ +R + + G+ Sbjct: 1141 MGRKLALML---EHGQDLASVREQVKTVFASDAISSEVDNMDDETFVRSVRRLRDGIVTK 1197 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA EE I S + A L G++ LYDG TG F VT G +Y+LKL+H+V +K+ Sbjct: 1198 TPVFDGATEEQIWSWMEQAGLANDGKTELYDGRTGVRFHNRVTTGVMYILKLHHLVDEKI 1257 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY+LQE LT+KSDDV GR + Sbjct: 1258 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVK 1317 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 +YE +V G++ E G PESFNVLVKE+ +LGL + L K Sbjct: 1318 MYEKVVKGDNFLEAGLPESFNVLVKELMSLGLDVTLHQEEGKK 1360 >gi|254455987|ref|ZP_05069416.1| DNA-directed RNA polymerase, beta subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207082989|gb|EDZ60415.1| DNA-directed RNA polymerase, beta subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 1361 Score = 1549 bits (4010), Expect = 0.0, Method: Composition-based stats. Identities = 733/1364 (53%), Positives = 985/1364 (72%), Gaps = 7/1364 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + F +RK FGK E + IP+LIEVQK SY + +G FKS+ Sbjct: 1 MQLSFTEKKNIRKSFGKLKESLSIPNLIEVQKNSYKEL--TEFYSEAELTKGFDRVFKSI 58 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + A LE+VSY D PKFDV++C+ R LTY+ LK TLRL+V+++D+ K I Sbjct: 59 FPIEDLNDKATLEYVSYRLDKPKFDVEECITRGLTYSSALKCTLRLVVYEIDQDNNTKDI 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KEQ +YMG++P+MT GTF+ G+QR+VV+Q+HRSPG+ FDHDKG+ SGKLL+ C Sbjct: 119 LSAKEQEVYMGEVPMMTNSGTFITNGVQRVVVNQMHRSPGVFFDHDKGKTHASGKLLFNC 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-- 240 R+IP++G W+D E+D KD ++ +IDR++K+ ++ L+ALG EI FY +Y+ Sbjct: 179 RVIPNRGSWLDFEYDVKDFLYFKIDRKKKIFASTLLLALGYSKAEIADEFYANELYTFDP 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + W + + S ++D TGE VI+ G K+ K L G+K + ++ Sbjct: 239 KTEKWKTKFNPENY-KAKNFSEEVIDAKTGEVVIKLGDKINFLNAKKLANDGLKDILVSR 297 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L G ++ D+ E E + G +++ +++I + I + I +S+N Y+ Sbjct: 298 ESLFGKFLHRDVKVSEEEEGVFKIGTELNDTIIQQISDANIHSLQISVTNSINKGPYLLT 357 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 T++ DKN + +A+ +IY+++RPG+ T +A +FN LFF SD+YDLS VGRVKMN RL Sbjct: 358 TILNDKNNSKDEAITEIYKMLRPGEPPTIEIATQIFNNLFFSSDRYDLSDVGRVKMNSRL 417 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 N D D + +R +DIIAI+ ++DLR+GK +DDID+LGNRRVRSVGE+++NQ R+G+ Sbjct: 418 NQDCSDKITILRNDDIIAIVHKMLDLRDGKDDVDDIDHLGNRRVRSVGELVENQARIGVY 477 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKE+++++D++S MPQDLINAKP+ ++ +FF SSQLSQ + N LS ITH RR Sbjct: 478 RMERAIKEKMTTLDVESAMPQDLINAKPLTVSLKDFFASSQLSQFMDQTNPLSEITHKRR 537 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL+++A++N YGFIE+ Sbjct: 538 VSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYAKINKYGFIES 597 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PY+KV DG V ++VVYLSAMEE IAQAN+ LD++G EELV CR +L + Sbjct: 598 PYKKVKDGVVQDNVVYLSAMEETKFTIAQANTKLDKNGKIVEELVSCRQNLNFLLAKPDT 657 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ID+ID SPKQ+VS+AASLIPFLENDD+NR LMG NM RQAVPLLK E+P VGTG+ES VA Sbjct: 658 IDYIDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQAVPLLKPESPLVGTGIESDVA 717 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG IV+KR GIV+++D RIVI++ E D S SGVDIY L KF+RSNQNTC+NQ+P Sbjct: 718 LDSGVTIVSKRDGIVDKIDGKRIVIKATEET-DFSKSGVDIYNLQKFKRSNQNTCINQKP 776 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+VGD+V+ DIIADGPST LG+LALG+N+ VAFMPW GYNFEDS+LISER V++DVFT Sbjct: 777 LVRVGDKVKTGDIIADGPSTKLGELALGKNVTVAFMPWQGYNFEDSILISERCVTDDVFT 836 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 S+HI E+E+MARDTKLG E+ITRDIPNV+EE LKN+DE GI+ +GAEVN GDILVGK+TP Sbjct: 837 SVHIVEYEIMARDTKLGEEDITRDIPNVNEEALKNLDESGIVYIGAEVNAGDILVGKVTP 896 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KG+S PEEKLLR+IFGEKA+DV DTSLR+ G SGTVVDVR+FNRHGI+K+ERSI++E Sbjct: 897 KGDSASGPEEKLLRSIFGEKAIDVTDTSLRMSRGSSGTVVDVRVFNRHGIEKDERSITIE 956 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 R +IE + +DK E+ IL+R+I R + L G + + K + T L + I + + Sbjct: 957 RAEIEQVQQDKIVEEEILERSIKQRASQFLSGSSLIKKVKDLSEGTKLDFETIDKLSVND 1016 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 ++ V + + + LK QY +K + +RF++K+ KI+ GDD+ P V+++VKVFVA+ Sbjct: 1017 VFKITVGNVNDEATLAQLKDQYNKAKQDITERFEDKVLKIRSGDDLLPSVMKMVKVFVAI 1076 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR ++ GDKM+GRHGNKG+VS+I+P EDMP+ +DG PVDIVLNPLGVPSRMNVGQI ETH Sbjct: 1077 KRRLRPGDKMSGRHGNKGVVSKIVPVEDMPYREDGRPVDIVLNPLGVPSRMNVGQILETH 1136 Query: 1141 LGWACVGLGKKIKSLIND-YKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LGWAC G+++K L+N+ K + FL+ V G EK+ + E Sbjct: 1137 LGWACKEFGEEVKKLVNENNKKIEKTEKISKFLKSVYGEEIFNEKVEKLSKPEFKDLCEN 1196 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 ++G+ +STPVFDGA E+ + ML +A+L SGQ+ L+DG TGE FDRPVTVG IYMLKL Sbjct: 1197 LQNGIAISTPVFDGAKEKNVTDMLELANLPGSGQTYLWDGRTGEKFDRPVTVGIIYMLKL 1256 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KS Sbjct: 1257 HHLVEDKIHARSTGPYSLVTQQPLGGKAQLGGQRFGEMEVWALEAYGASYTLQEILTVKS 1316 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 DDV GR +VYE+IV G + FE+G PESFNVLVKE+++L L+++L Sbjct: 1317 DDVAGRVKVYETIVKGEENFESGIPESFNVLVKEIKSLALNVEL 1360 >gi|158520719|ref|YP_001528589.1| DNA-directed RNA polymerase, beta subunit [Desulfococcus oleovorans Hxd3] gi|226699395|sp|A8ZV51|RPOB_DESOH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158509545|gb|ABW66512.1| DNA-directed RNA polymerase, beta subunit [Desulfococcus oleovorans Hxd3] Length = 1368 Score = 1548 bits (4008), Expect = 0.0, Method: Composition-based stats. Identities = 707/1365 (51%), Positives = 945/1365 (69%), Gaps = 10/1365 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R+RK FGK +I++IPDLI +QK SY FL + P++R GLQA F+SVFPI F+ Sbjct: 9 RRIRKQFGKLDKIVEIPDLIGMQKESYGRFLQQGVPPEKREKIGLQAIFQSVFPIKDFTK 68 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 +A LEFVSY F K V +C+ R +TY +P++I +RL+V+D+DE +G SI+DIKEQ I Sbjct: 69 SASLEFVSYSFGGVKHSVAECIQRGMTYEIPVRIRVRLVVYDMDETSGTSSIRDIKEQEI 128 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y G +PLMT +GTF+I G +R+VVSQLHRS GI FDHD+G+ SGK++Y+ RIIP +G Sbjct: 129 YFGAIPLMTDNGTFIINGTERVVVSQLHRSSGIFFDHDQGKTHSSGKVVYSSRIIPVRGS 188 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+DIE D KDI+H+RIDRRRK P T ALG ++IL FY K R F Sbjct: 189 WIDIEIDPKDIVHMRIDRRRKFPGTILFKALGYTVKDILDYFYTKERVFVRKKK-VFKAF 247 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 + D + G + + + +TG+ +++ G+ +LK++K G+ + I + + G +A Sbjct: 248 SEDSLRGQRATVRIKHPETGDLIVDKGRIFNKTVLKNMKSAGIDMVPIRPEDVVGAVLAA 307 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 + + TGE+ +AGD I E+ E I I ++ IL++D + I TL+ DK + Sbjct: 308 PLADSSTGEMLADAGDFISEEVFERIGELGIEELQILFIDGAGSTDSIVKTLLLDKVNTK 367 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 ++AL+DIYR +RPG+ +T VA+ + LFF D YDLS VGR+K+N RL + P +R Sbjct: 368 EEALIDIYRRIRPGNPATPEVAQDFIDHLFFKPDYYDLSAVGRLKLNHRLGANAPVSLRT 427 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 +R+ED++ +K L+ L+N +G +DDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER+ Sbjct: 428 LRREDLLLAVKTLIHLKNTQGPVDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERM 487 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 S ++D++MP DLIN KPV + V EFF +SQLSQ + N LS TH RRLSALG GG+ Sbjct: 488 SLQEVDALMPHDLINPKPVSAVVREFFGTSQLSQFMDQTNPLSETTHKRRLSALGPGGLT 547 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVHP+HYGRICP ET EG NIGL+ SL+++ARVN YGFIETPYR V D KV Sbjct: 548 RERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLSTYARVNGYGFIETPYRVVKDTKV 607 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 + ++ L A EE IAQAN+ + +DG + +V R AGE ++ ++ +D SP Q Sbjct: 608 SKEIKMLPAFEEGEHPIAQANAPIGKDGRYVNPVVIARVAGEFSMIKASDVELMDVSPNQ 667 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 +VS++ASLIPFLENDD+NR LMG NMQRQ+VPL + AP VGTG+E VVA+ SG A+VA+ Sbjct: 668 LVSVSASLIPFLENDDANRALMGSNMQRQSVPLARTSAPLVGTGVEKVVARDSGVAVVAR 727 Query: 731 RAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRR 790 R G V VD+ RIV+R D DP V +Y L KF RSNQNTC N RP+VK G V Sbjct: 728 RPGEVVYVDSGRIVVRHDTDDKDPEAKPVTVYNLSKFIRSNQNTCFNHRPIVKKGQRVAP 787 Query: 791 NDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVM 850 D++ADGP+T+ G+LALG+N+ VAFMPW GYNFEDS+L+ E +V + VFTSIHIEEFEV+ Sbjct: 788 GDVLADGPATEKGELALGKNVTVAFMPWGGYNFEDSILVGETLVRDGVFTSIHIEEFEVV 847 Query: 851 ARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEE 910 ARDTKLG EEIT DIPNV EE L ++DE GI+ +GAEV PGD+LVGKITPKGE+ ++PEE Sbjct: 848 ARDTKLGKEEITCDIPNVGEESLVDLDESGIVRLGAEVKPGDVLVGKITPKGETQLSPEE 907 Query: 911 KLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARD 970 KLLRAIFGEK +V+DTSLRVP GVSGTV+D ++F R G++K+ R+ +E E+I +L ++ Sbjct: 908 KLLRAIFGEKGGNVKDTSLRVPPGVSGTVIDAKVFTRRGVEKDTRTRMIEEEEIRVLEKN 967 Query: 971 KDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-----KSTVLSSDLISEYPRSQWWQFA 1025 +DDE +++ RL +L GQ + K K K +++ L E P SQ+ + A Sbjct: 968 RDDEIAVIEEVTRERLKALLTGQKCDTPVKKGKKTILAKGDKITAALFDEVPTSQFEKLA 1027 Query: 1026 VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 V + V + Y T + F+ +I + G+++PPGV+++VKV+VAMKR + Sbjct: 1028 VTSDSVTEQAHRVFEWYRTQVDACREEFEARISRYGAGEELPPGVIKMVKVYVAMKRVLS 1087 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 +GDKMAGRHGNKG+VSRILP ED+P+ +DGT VD+VLNPLGVPSRMNVGQI E HLG A Sbjct: 1088 TGDKMAGRHGNKGVVSRILPQEDLPYFEDGTTVDMVLNPLGVPSRMNVGQILEIHLGRAA 1147 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 LG +I +++ L+ L V +I + A ++K GV Sbjct: 1148 RVLGDQISTML----EEKKYKDLKKKLSAVFNKEIPAAEIEAMSSARLCEFASEYKDGVH 1203 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 + TPVFDGA E I ++L+ DE+GQ+ILYDG TG+PFD +TVG +YMLKL+H+V D Sbjct: 1204 METPVFDGAKEAEIKALLKEGGADETGQAILYDGRTGQPFDERITVGTMYMLKLHHLVDD 1263 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDD+ GR Sbjct: 1264 KLHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDIAGR 1323 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 TR+YE IV G + + G PESF VL KEM+ALGL + L + K Sbjct: 1324 TRMYEKIVKGQNVLDPGIPESFKVLTKEMKALGLDVTLIEQQDKE 1368 >gi|320352910|ref|YP_004194249.1| DNA-directed RNA polymerase subunit beta [Desulfobulbus propionicus DSM 2032] gi|320121412|gb|ADW16958.1| DNA-directed RNA polymerase subunit beta [Desulfobulbus propionicus DSM 2032] Length = 1357 Score = 1548 bits (4007), Expect = 0.0, Method: Composition-based stats. Identities = 703/1361 (51%), Positives = 960/1361 (70%), Gaps = 13/1361 (0%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 RVRK F K +II+ P LI +Q+ SY+HFL +IAP+ R + GLQ+ F+S+FPIT F+G Sbjct: 3 RVRKSFAKTSQIIEPPHLIAMQRESYEHFLQRDIAPELRKDHGLQSIFQSIFPITDFNGL 62 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 LEFV Y F PK+ V +C+ R +TY PLKIT+RLI FDVDE TG +S++DIKEQ ++ Sbjct: 63 CSLEFVRYSFGEPKYTVAECIERGMTYEAPLKITVRLITFDVDEATGVQSVRDIKEQEVF 122 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G LPLMT+DG FV+ G +R++V+QL RSPG+ + HD G++ SGK LY+ RIIP +G W Sbjct: 123 LGALPLMTQDGVFVVNGTERVIVNQLQRSPGLFYTHDHGKSHASGKRLYSARIIPVRGSW 182 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 +D EFD KDI++VRIDRRRK+PV+ L ALG E++L+ FY V + G+ + +A Sbjct: 183 LDFEFDIKDILYVRIDRRRKLPVSVLLKALGYGDEQLLNEFYHSDVITCEGEKYSIAFNA 242 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++++ ++ G + + GKK+T L K ++ GV + I + L G Y A D Sbjct: 243 I-TFANQRLNTDIIHPGDGTIIAKKGKKVTKTLAKKIESLGVASISIDVEELYGRYFARD 301 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 IVN +TGE+ ++ D + +LE + + I +L++D VN + R TL+ DK KD Sbjct: 302 IVNEQTGEVVVKCNDTVTPATLEALAVAGINSFSLLFIDGVNFSESFRKTLLLDKIKDTD 361 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +AL++IYR +RP T VA++ F+ LFF+ YDLS VGR K+N +L +DTP +VR + Sbjct: 362 EALIEIYRRLRPSSPPTLEVAKAFFDNLFFNPATYDLSEVGRYKINTKLGVDTPIEVRTL 421 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 +EDII +K LV +++ DDID+LGNRRVR+VGE+ +NQ+R+GL+RMER+IKER++ Sbjct: 422 TQEDIIKSVKYLVRIKDELKDGDDIDHLGNRRVRTVGELCENQFRMGLVRMERAIKERMT 481 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 +I+++MP DL+N KPV SA+ EFF +SQLSQ + N LS +TH RRLSALG GG++R Sbjct: 482 LQEIETLMPHDLVNPKPVTSAIKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLSR 541 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT 611 RAG E+RDVHPTHYGRICP ET EG NIGL+ SL ++A VN YGFIETPYR V D V+ Sbjct: 542 ERAGFEVRDVHPTHYGRICPVETPEGPNIGLIVSLATYAMVNPYGFIETPYRYVQDRIVS 601 Query: 612 NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQV 671 N+ YLSA++EE+ IA A LD D ++ + R E +V + I +D +P Q+ Sbjct: 602 NEYKYLSALQEEDHVIAPAKIPLDGD-RIADDYLIARQESEVAMVAADDITMMDIAPNQM 660 Query: 672 VSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR 731 VS+AASLIPFLENDD+NR LMG NMQRQAVPLLK AP VGTG+E VA+ SGA ++A Sbjct: 661 VSVAASLIPFLENDDANRALMGSNMQRQAVPLLKTSAPLVGTGVEKYVARDSGACLLAGG 720 Query: 732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRN 791 G+VE+ DA RIV+R + +D +G+ +Y L K+++SNQNTC NQ+ LV G V + Sbjct: 721 DGVVEEADANRIVVRYDQPGVDGFDTGIGVYHLSKYKKSNQNTCFNQKALVLPGQRVVKG 780 Query: 792 DIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMA 851 ++ADGPST++G+LALG+N+ +AFMPW GYNFEDS+LI+ER++ ED FTS+HIE FE MA Sbjct: 781 TVLADGPSTEVGELALGKNVTIAFMPWRGYNFEDSILINERLLKEDTFTSVHIEIFETMA 840 Query: 852 RDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEK 911 RDTKLG EEITRDIPNV EEGL+N+D+ GI+ +GAEV GD+LVGK+TPKGES ++PEEK Sbjct: 841 RDTKLGKEEITRDIPNVGEEGLRNLDDSGIVRIGAEVRAGDMLVGKVTPKGESMLSPEEK 900 Query: 912 LLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDK 971 LLRAIFGEKA DV+D+SLRVP G+ G V+D ++F+R G+DK+ER++ +E +IE L RD Sbjct: 901 LLRAIFGEKAGDVKDSSLRVPPGIEGVVIDAKVFSRKGVDKDERTLMIEEMEIERLNRDM 960 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKG------FKKSTVLSSDLISEYPRSQWWQFA 1025 + E L + + L +L G+ A S K K L++ ++S+ ++ Sbjct: 961 EAELRSLKNGVRNSLAVLLEGRTAKSDIKDKKGKIILKLGKQLTAKVVSQISFAELHDLD 1020 Query: 1026 VQD-EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPI 1084 + K + ++++ +Y T S++ R++ +E+++ GDD+PPGV+++VK++VA KR + Sbjct: 1021 FSERAKYEDEIDAIFKRYNTQASVVRGRYQGIVERMEKGDDLPPGVVKMVKIYVATKRKL 1080 Query: 1085 QSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWA 1144 GDKMAGRHGNKG+VSR+LP EDMPF DGT VDIVLNPLGVPSRMNVGQ+ E HLG+A Sbjct: 1081 AVGDKMAGRHGNKGVVSRLLPEEDMPFFADGTTVDIVLNPLGVPSRMNVGQVLECHLGFA 1140 Query: 1145 CVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGV 1204 LG+++ ++ + + L+ L ++ + D+ +L + ++ G+ Sbjct: 1141 AKRLGEQLSAVA----KQKEAARLKQRLAQIYSQEEYARLTEGLSDEELLDMMCKYGHGI 1196 Query: 1205 PVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVS 1264 V+TPVFDGA E I L A +DE GQS LYDGLTGEPFD VTVG +YMLKL+H+V Sbjct: 1197 HVATPVFDGASENEIRQALVEAGVDEVGQSTLYDGLTGEPFDNQVTVGVMYMLKLHHLVD 1256 Query: 1265 DKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVG 1324 +K++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY L+E LT+KSDDV G Sbjct: 1257 NKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYTLKEFLTVKSDDVEG 1316 Query: 1325 RTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 RT +YE IV GN+ ETG PESF+VLVKE++ L L I+L Sbjct: 1317 RTTMYEKIVKGNNFLETGLPESFHVLVKELKGLCLDIELLE 1357 >gi|323700800|ref|ZP_08112712.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio sp. ND132] gi|323460732|gb|EGB16597.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio desulfuricans ND132] Length = 1379 Score = 1548 bits (4007), Expect = 0.0, Method: Composition-based stats. Identities = 689/1363 (50%), Positives = 937/1363 (68%), Gaps = 15/1363 (1%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK FGK + IP L+E+Q SY+ FL + P R + GL+ F+SVFPI F+ A Sbjct: 4 LRKKFGKIVNTLPIPHLLELQVDSYNRFLQADTPPASRGDFGLEGVFRSVFPIEDFNKTA 63 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 L+FVSYE PK+DVD+C+ + LTY P++IT+RL+VFDVDE T ++I+DIKEQ IY Sbjct: 64 SLDFVSYEIGEPKYDVDECISKGLTYETPIRITVRLVVFDVDEETDNRTIRDIKEQDIYF 123 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G LPLMT+ GT+VI G +R++V+QL RSPGI F+HD G++ S K+LY+ RIIP +G W+ Sbjct: 124 GTLPLMTEKGTYVINGTERVIVNQLQRSPGIIFEHDSGKSHSSRKVLYSSRIIPMRGSWL 183 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D +FD KDI++VRIDRRRK+PVT L A+G+ +IL FY Y+ + A Sbjct: 184 DFDFDHKDILYVRIDRRRKMPVTILLKAMGLSRADILDYFYEIESYTLLKTKVMRTVVAE 243 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 A + VD G+ +++ G +T G K L + VK + + D L G ++A D+ Sbjct: 244 QYRKEAAYADVDVD---GKSILKKGVDITRGAWKKLIKAEVKAIEVDPDSLIGQFLARDM 300 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 V+ + GE+ EA + + L+++ ++I+D+ +L+ + ++ +R+TL+ DK D + Sbjct: 301 VD-KNGEVIAEAAEELTADLLDKLRDAKIKDLDVLHTRGMEVSSSLRDTLLLDKTTDMES 359 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 A ++IYR +RP T +A S F LF SD YDLS+VGR K+N RLN D +R + Sbjct: 360 AQIEIYRRLRPSSPPTPEIAASFFENLFRSSDYYDLSSVGRYKLNSRLNQDVDLSIRTLT 419 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 EDI+ +K L+ L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S Sbjct: 420 NEDILLAVKELMRLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSL 479 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 ++ ++MP DLIN KPV + + EFF +SQLSQ + N LS +TH RRLSALG GG+ R Sbjct: 480 QEVATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRE 539 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVH +HYGRICP ET EG NIGL+ SLT++A+VN YGFIETPYRKV D K+T+ Sbjct: 540 RAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYAKVNDYGFIETPYRKVVDKKITD 599 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 V Y+ A +E +AQAN+ LD++G FT + V R AGE L E + +D SP Q V Sbjct: 600 VVTYMDASKEAKEVVAQANAPLDKNGVFTNQRVNARWAGEVQLTAAEDVTCMDISPSQTV 659 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 SI+A+LIPFLE+DD+NR LMG NM RQAVPLLKAE P VGT ME VA+ SGA ++AK Sbjct: 660 SISAALIPFLEHDDANRALMGSNMMRQAVPLLKAEEPLVGTDMEGPVARDSGACVLAKED 719 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G++ VDA RI+I G P T G Y L K+ +SNQN+C Q P V+VG VR+ D Sbjct: 720 GVIHYVDAERIIINYDNGLF-PETGGAKHYELQKWHKSNQNSCFGQTPRVQVGQRVRKGD 778 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 ++ADGP D G+LALG+N+LVAFMPW G+N+EDS+LISERMV EDV+TSIHIEEFE++AR Sbjct: 779 VLADGPGIDHGELALGKNLLVAFMPWCGFNYEDSVLISERMVKEDVYTSIHIEEFELVAR 838 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLGPEE+TRDI NVSEE L+N+DECGII +GA + P DI+VGKITPKGE+ +TPEEKL Sbjct: 839 DTKLGPEEVTRDISNVSEEMLRNLDECGIIRIGARIKPDDIMVGKITPKGETQLTPEEKL 898 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFG+KA DV++TSL+VP G++GT+VDV++FNR +K++R+ ++E ++ + Sbjct: 899 LRAIFGDKARDVKNTSLKVPPGIAGTIVDVKVFNRRSGEKDDRTKAIEDAELAAFDVKEQ 958 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKK------STVLSSDLISEYPRSQWWQFAV 1026 L I ++ ++ G G KK V+ + + E P + + Sbjct: 959 KHVAALTDAIREKVWAVVEGAKLKKDLAGPKKATLGKTGEVIDRESVDEVPVKKL--IGL 1016 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 D +V ++ + YE + +++ + K EK+ GDD+PPGV+++VKV+VA+KR + Sbjct: 1017 FDREVNDQLKLIVADYEQQIAFIKNIYDVKREKVTEGDDLPPGVIKMVKVYVAVKRKLSV 1076 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG+VS ILP EDMPF +DGT +DIVLNPLGVPSRMN+GQI ETHLG A Sbjct: 1077 GDKMAGRHGNKGVVSCILPEEDMPFFEDGTSMDIVLNPLGVPSRMNIGQIMETHLGMAGR 1136 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG++++ ++ ++ + +R ++ ++ T E I D+ + ++ K+G+ Sbjct: 1137 KLGQQVQQML--EESGNSLKAIREEVKSILDTQDMNELIDTMSDEEFVDAVKKLKNGIVA 1194 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 TPVFDGA+E+ I L A L G+ ILYDG TGEPF VTVG +Y LKL+H+V +K Sbjct: 1195 KTPVFDGAEEDGIWGWLEKAGLASDGKFILYDGRTGEPFHNRVTVGIMYYLKLHHLVDEK 1254 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY+LQE LT+KSDDV GR Sbjct: 1255 IHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVQGRV 1314 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 ++YE IV G++ E G PESFNVLVKE+ +LGL + L K Sbjct: 1315 KMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVTLHYEDRK 1357 >gi|283851496|ref|ZP_06368776.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio sp. FW1012B] gi|283573030|gb|EFC21010.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio sp. FW1012B] Length = 1368 Score = 1548 bits (4007), Expect = 0.0, Method: Composition-based stats. Identities = 685/1362 (50%), Positives = 929/1362 (68%), Gaps = 14/1362 (1%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K FGK + + IP L+ +Q SY+ FL ++ P R + GL+ F+SVFPI F+ A L Sbjct: 6 KNFGKIVKTLTIPHLLNLQIDSYELFLQKDVPPTSREDAGLEGVFRSVFPIEDFNRTASL 65 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 E+VSYE PK+DV +C+ + LTY PL+I +RL+V+DVDE T ++I+DIKEQ IY G Sbjct: 66 EYVSYEIGEPKYDVPECIGKGLTYEAPLRIKVRLVVYDVDEETENRTIRDIKEQVIYFGT 125 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 +PLMT+ GTF+I G +R++V+QL RSPGI F+HD G++ S K+LY+CR+IP +G W+D Sbjct: 126 VPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKSHTSRKVLYSCRVIPMRGSWLDF 185 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 ++D KDI++VRIDRRRK+P T A+GM +IL FY ++ G F D Sbjct: 186 DYDHKDILYVRIDRRRKMPATILFKAMGMSRVDILRYFYEIEHFTVEG-PRVFRQVHPDF 244 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 K + D + G+ ++ K +T + + E G++ + + L GL++AED+++ Sbjct: 245 YRKEKAYGEVRDAE-GKTIVAVDKPITKRAWRLMLEAGIEKIEVDPATLTGLFLAEDVLD 303 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 TGE+ EA D + +E++ + + D P+L+ V+ ++ IR+T+ DK D A Sbjct: 304 VATGEVLAEAADELTPDVVEKLKDAGVADFPVLHTRGVDTSSSIRDTMALDKTIDTITAQ 363 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 ++IYR +RP T +A + F LF +SD YDLS VGR K+N RL +D P D R + + Sbjct: 364 VEIYRRLRPSSPPTPEIAANFFENLFRNSDYYDLSPVGRYKLNARLKIDQPLDFRTLAND 423 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DI+ +K L L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S + Sbjct: 424 DILKAVKHLTFLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSLQE 483 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 + ++MP DLIN KPV + + EFF +SQLSQ + N LS +TH RRLSALG GG+ R RA Sbjct: 484 VATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERA 543 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVH +HYGRICP ET EG NIGL+ SLT+ ++VN +GFIETPYR V D +VT++V Sbjct: 544 GFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTHSKVNDFGFIETPYRVVRDSQVTDEV 603 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 VYL A E + IA AN+ LD + F +V R G+ I+ PRE++ +D SP Q+VS+ Sbjct: 604 VYLDATREIDEVIAGANAELDAEARFIHPMVGSRIRGDLIMTPREQVTLMDISPSQIVSV 663 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 +A+LIPFLE+DD+NR LMG NMQRQAVPLL+ E P VGTGME VAK SG+ ++A+ G+ Sbjct: 664 SAALIPFLEHDDANRALMGSNMQRQAVPLLRCEQPLVGTGMEGPVAKDSGSCLLAEAPGV 723 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 V DA R VI +G + P T G Y L+K +SNQNTC Q P V+VG V + D++ Sbjct: 724 VHYADAER-VIVCYDGTVSPDTGGAKTYELLKHHKSNQNTCFGQVPRVRVGQRVVKGDVL 782 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGP G+LALG+N+LVAFMPW GYN+EDS+LI+E+ V +D FTS+HIEEFEV+ARDT Sbjct: 783 ADGPGIRDGELALGKNLLVAFMPWCGYNYEDSILIAEKAVKDDTFTSVHIEEFEVVARDT 842 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEITRDIPNV EE L ++DECGII +GA+V P DILVGKITPKGE+ +TPEEKLLR Sbjct: 843 KLGPEEITRDIPNVGEEMLNDLDECGIIRIGAKVVPDDILVGKITPKGETQLTPEEKLLR 902 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFG+KA DV++TSL+VP G+ GTV+DVR+FNR +K+ER+ S+E ++ L + Sbjct: 903 AIFGDKARDVKNTSLKVPPGIEGTVIDVRVFNRRSGEKDERTRSIEDYELSRLDIKEGQH 962 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV-------LSSDLISEYPRSQWWQFAVQ 1027 + N+ R+ ++ G+ KG KK+ V ++ +L+ P + Sbjct: 963 IDAIAANMRRRIWPLVAGKTVFQTIKGSKKNEVLLEANHPITQELLETLPIKKLSGI-FS 1021 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 ++ V L +Y+ ++ + K EK+ GDD+PPGV+++VKV+VA+KR + G Sbjct: 1022 SKEANEAVAELLDEYDRHIHFVKGVYDQKREKVTEGDDLPPGVIKMVKVYVAVKRKLNVG 1081 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VS ILP EDMPF DGTPVDIVLNPLGVPSRMN+GQI ETHLGWA + Sbjct: 1082 DKMAGRHGNKGVVSCILPEEDMPFFADGTPVDIVLNPLGVPSRMNIGQIMETHLGWAGME 1141 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LGK++ +LI K + +R+ + V I DD + + + K G+ Sbjct: 1142 LGKQLAALIESGKP---MEGVRAEAKSVFSAADTVAMIDGMTDDELRKALKGLKKGIVAK 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E+ + L+ A L E G+ LYDG TGE F RPVTVG +Y+LKL+H+V +K+ Sbjct: 1199 TPVFDGATEDEMWGWLKQAGLPEDGKVTLYDGRTGEAFHRPVTVGCMYILKLHHLVDEKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA+Y+LQE LT+KSDDV GR + Sbjct: 1259 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASYLLQEFLTVKSDDVGGRVK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 +YE IV G++ E G PESFNVLVKE+ +LGL +DL K Sbjct: 1319 MYEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVDLIQDEKK 1360 >gi|239907752|ref|YP_002954493.1| DNA-directed RNA polymerase beta subunit [Desulfovibrio magneticus RS-1] gi|259494180|sp|C4XIN9|RPOB_DESMR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|239797618|dbj|BAH76607.1| DNA-directed RNA polymerase beta subunit [Desulfovibrio magneticus RS-1] Length = 1369 Score = 1545 bits (4001), Expect = 0.0, Method: Composition-based stats. Identities = 679/1362 (49%), Positives = 924/1362 (67%), Gaps = 13/1362 (0%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K FGK + + IP L+ +Q SY+ FL +I P R + GL+ F+SVFPI F+ A L Sbjct: 6 KNFGKIVKTLTIPHLLNLQIDSYELFLQKDIPPTSREDAGLEGVFRSVFPIEDFNRTASL 65 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 E+VSYE PK+DV +C+ + LT+ PL+I +RL+V+DVDE T ++I+DIKEQ IY G Sbjct: 66 EYVSYEIGEPKYDVPECIAKGLTFEAPLRIKVRLVVYDVDEETENRTIRDIKEQIIYFGT 125 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 +PLMT+ GTF+I G +R++V+QL RSPGI F+HD G++ S K+LY+CRIIP +G W+D Sbjct: 126 VPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKSHTSRKVLYSCRIIPMRGSWLDF 185 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 ++D KDI++VRIDRRRK+P T A+GM +IL FY ++ F D Sbjct: 186 DYDHKDILYVRIDRRRKMPATILFKAMGMSRADILRYFYEVEHFTFEP-HHVFRQVLPDF 244 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 K S + D + G+ ++ K +T + + E G++ + + L GL++AED+ + Sbjct: 245 YRKEKAYSEIRDSE-GKVIVAVDKPITKRAWRLMLEAGIEKVEVDPATLLGLFLAEDLAD 303 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 TGE+ EAGD ++ +E++ + I ++ +L+ V+ ++ IR+TL DK D A Sbjct: 304 PATGEVMAEAGDELNADLIEKLKDAGIVELSLLHTRGVDTSSSIRDTLALDKTIDTITAQ 363 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 ++IYR +RP T +A + F LF + D YDLS VGR K+N RL +D P D R + + Sbjct: 364 VEIYRRLRPSSPPTPEIAANFFENLFRNPDYYDLSPVGRYKINARLKVDQPLDFRTLAND 423 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DI+ +K L L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S + Sbjct: 424 DILKAVKHLTFLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSLQE 483 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 + ++MP DLIN KPV + + EFF +SQLSQ + N LS +TH RRLSALG GG+ R RA Sbjct: 484 VATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERA 543 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVH +HYGRICP ET EG NIGL+ SLT+ ++VN +GFIETPY+ V DG++T + Sbjct: 544 GFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTHSKVNDFGFIETPYKVVKDGQLTGET 603 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 +YL A E + IA AN+ LDE+ +F +V R G+++++PRE++ +D SP Q+VS+ Sbjct: 604 IYLDATREIDEVIAGANAPLDENKAFINSMVGARIRGDQVVIPREQVTLMDISPSQIVSV 663 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 +A+LIPFLE+DD+NR LMG NMQRQAVPLL+ E P VGTGME VAK SG+ I+A+ G Sbjct: 664 SAALIPFLEHDDANRALMGSNMQRQAVPLLRCEQPLVGTGMEGAVAKDSGSCILAEGEGF 723 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 V DA RI++ + + T Y L+K +SNQNTC Q P V VG V + D++ Sbjct: 724 VHYADAERIIVCYDDPAVGTDTGSAKTYELLKHHKSNQNTCFGQVPRVLVGQRVVKGDVL 783 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGP G+LALG+N+LVAFMPW GYN+EDS+LISE V +D FTS+HIEEFEV+ARDT Sbjct: 784 ADGPGIRDGELALGKNLLVAFMPWCGYNYEDSILISENAVKDDTFTSVHIEEFEVVARDT 843 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEITRDIPNV EE LK++D+CGII +GA V P DILVGKITPKGE+ +TPEEKLLR Sbjct: 844 KLGPEEITRDIPNVGEEMLKDLDDCGIIRIGARVAPDDILVGKITPKGETQLTPEEKLLR 903 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFG+KA DV++TSL+VP G+ GTV+DVR+FNR +K++R+ +E ++ L + Sbjct: 904 AIFGDKARDVKNTSLKVPPGIEGTVIDVRVFNRRSGEKDDRTRQIEDFELARLDTKEGQH 963 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL-------SSDLISEYPRSQWWQFAVQ 1027 + N+ RL ++ G+ KG KK VL + +++ P + Sbjct: 964 AAAIAANVRRRLWPVVSGKTVFQTIKGVKKGEVLLEANHPMTQEVLEALPVKKLSGLFTS 1023 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 E V + +Y+ ++ + K EK GDD+PPGV+++VKV+VA+KR + G Sbjct: 1024 KE-TNEAVAEVLDEYDRHIQFIKGLYDQKREKTTEGDDLPPGVIKMVKVYVAVKRKLNVG 1082 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VS ILP EDMPF G PVDIVLNPLGVPSRMN+GQI ETHLGWA + Sbjct: 1083 DKMAGRHGNKGVVSCILPIEDMPFFSHGRPVDIVLNPLGVPSRMNIGQILETHLGWAGME 1142 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG+++ +++ KA + +R + V T T I DD + K+G+ Sbjct: 1143 LGRQLAEMVDSGKA---MEGVRDRAKAVFDTEETTALIDGMSDDDLRDALRALKNGIVAK 1199 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E+ + S L++A L E G+ LYDG TGE F RPVTVG +Y+LKL+H+V +K+ Sbjct: 1200 TPVFDGATEDELWSWLKLAGLPEDGKVTLYDGRTGEAFHRPVTVGCMYILKLHHLVDEKI 1259 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA+Y+LQE LT+KSDDV GR + Sbjct: 1260 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASYLLQEFLTVKSDDVGGRVK 1319 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 +YE IV G++ E G PESFNVLVKE+ +LGL +DL K Sbjct: 1320 MYEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVDLIQDEKK 1361 >gi|94266150|ref|ZP_01289862.1| DNA-directed RNA polymerase, beta subunit [delta proteobacterium MLMS-1] gi|93453265|gb|EAT03714.1| DNA-directed RNA polymerase, beta subunit [delta proteobacterium MLMS-1] Length = 1372 Score = 1543 bits (3996), Expect = 0.0, Method: Composition-based stats. Identities = 703/1363 (51%), Positives = 969/1363 (71%), Gaps = 12/1363 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R+RK F K I++ P LIE+Q SY+ FL ++ P++R +EGLQ FKSVFPI F+ Sbjct: 5 RRLRKNFAKTKAIVEKPHLIEMQSRSYEQFLQLHTPPEQRLDEGLQGIFKSVFPIKDFNE 64 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 A LE+V+Y F PK+ V++C R +TY VP+++T+RL+ +D D +GAKSI+DIKEQ++ Sbjct: 65 ACSLEYVNYTFGEPKYTVEECAQRGMTYEVPVRMTVRLVTYDTDPDSGAKSIRDIKEQAV 124 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+G +PLMTK G FV+ G +R++VSQL RSPG+ + HD G+ GKLLY+ RIIP +G Sbjct: 125 YLGSIPLMTKAGVFVVNGTERVIVSQLQRSPGLFYSHDGGKTHAGGKLLYSARIIPVRGS 184 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+D+EFD+KDI++VRIDRRRK PV++ L ALG SEE+L FY + + Sbjct: 185 WIDLEFDAKDILYVRIDRRRKFPVSTLLKALGYSSEELLRYFYQTEQIKISRNKFKKKFD 244 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 A MVG ++ L++ GE + G+K+ L K + E G+ L I + L G Sbjct: 245 PA-TMVGQRLPHDLINPADGEVLARKGRKVGKALAKKISEAGIASLDIEAADLVGKVTVA 303 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 I N ETGE+ I A + E LEEI ++++ IL +D + + TL D+ + R Sbjct: 304 PIANPETGEVMIPANTELTESMLEEILAAKVKAFEILVIDGITVSDSFSKTLQLDRVESR 363 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 +DAL++IYR +RP T VAES FN LFF+ + YDLS VGR K+N RL ++T + Sbjct: 364 EDALIEIYRRLRPSSPPTMEVAESFFNNLFFNPELYDLSVVGRFKINARLGIETDTSIHT 423 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + EDI+ ++ L L++ +G IDDID+LGNRRVR+VGE+++NQYR+GL+RMER+IKER+ Sbjct: 424 LTVEDIMLAVRKLAQLKDAQGGIDDIDHLGNRRVRTVGELVENQYRMGLVRMERAIKERM 483 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 S +++++MP DLIN KP+ +AV EFF +SQLSQ + N LS +TH RRLSALG GG++ Sbjct: 484 SLQEVETLMPHDLINPKPITAAVKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLS 543 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVHPTHYGRICP ET EG NIGL+ SL S+ARVN YGFIETPYR+V + ++ Sbjct: 544 RERAGFEVRDVHPTHYGRICPVETPEGPNIGLIVSLASYARVNQYGFIETPYRQVKNRQL 603 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 T+++ Y++A++EE R IA A + +D G T E + R GE ++ ++I +D SP Q Sbjct: 604 TDEINYMTALDEEGRVIAPARTEVDAQGKLTPETLIARLDGEVMISTADEITDMDVSPNQ 663 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 +VS+AASL+PFLENDD+NR LMG NMQRQ VPLL++E+P VGTG+ES VA+ SG ++A Sbjct: 664 LVSVAASLVPFLENDDANRALMGSNMQRQGVPLLRSESPLVGTGLESAVARDSGVCLLAG 723 Query: 731 RAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRR 790 G++E+VDA RIV+R E D T+G+ IYRL K+++SNQNTC QRPLV G V++ Sbjct: 724 GDGVIEEVDANRIVVRYDEPGTDGFTTGIGIYRLEKYKKSNQNTCFTQRPLVDPGVRVKK 783 Query: 791 NDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVM 850 +I+ADGP+ + G+LAL +N+ VAFMPW GYN+EDS+L++ER++ +D +TS+HIE FE + Sbjct: 784 GEILADGPACEQGELALAKNVTVAFMPWRGYNYEDSILVNERLLKQDTYTSLHIEVFETV 843 Query: 851 ARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEE 910 ARDTKLG EE+TRDIPNVSE+ L+N+DE GII GAE+ GDILVGKITPKGE+ ++PEE Sbjct: 844 ARDTKLGKEEVTRDIPNVSEDALRNLDESGIIRSGAEIKSGDILVGKITPKGETQLSPEE 903 Query: 911 KLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARD 970 KLLRAIFGEKA DV+DTSLRVP GV G VVD ++F+R G++K+ER++++E +I+ L RD Sbjct: 904 KLLRAIFGEKAGDVKDTSLRVPPGVEGVVVDAKVFSRKGVEKDERTLAIEEAEIKALERD 963 Query: 971 KDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK------KSTVLSSDLISEYPRSQWWQF 1024 +DE +L ++ + + E+L G+ A S K K K L+ +++++ S+ + Sbjct: 964 LEDELQLLAGSVRNGVAELLVGKVAKSVVKNRKGEEILAKGKKLNREVLNKLSPSEIKKL 1023 Query: 1025 AVQD-EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 E ++ V+ L ++E+ + R++ +I ++Q GDD+PPGV+R+VKV+VA+KR Sbjct: 1024 DYAGRESLEGEVKLLFDRHESQIKAVRSRYEARISRLQKGDDLPPGVIRMVKVYVAIKRK 1083 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 + GDKMAGRHGNKG+VSRILP EDMP+ DGT VD+VLNPLGVPSRMNVGQ+ E HLG Sbjct: 1084 LAVGDKMAGRHGNKGVVSRILPEEDMPYFADGTSVDVVLNPLGVPSRMNVGQLLEIHLGL 1143 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSG 1203 A LGK+++ + D++ ++ L V + + + D DD +L +A + +G Sbjct: 1144 AAKELGKQVQQMA----EARDLAAVKKKLAAVYSPQEYEQLVGDLSDDELLELASRMGNG 1199 Query: 1204 VPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMV 1263 + ++TPVFDGA E+ I +L A LDE GQ LYDGL+GE FD VTVG +Y+LKL+H+V Sbjct: 1200 LHMATPVFDGAREDEIRQLLVEAGLDEIGQIELYDGLSGEKFDNKVTVGSMYVLKLHHLV 1259 Query: 1264 SDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVV 1323 DK++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA+Y LQE LT+KSDDV Sbjct: 1260 DDKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGASYTLQEFLTVKSDDVG 1319 Query: 1324 GRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRTR+YE IV GN+ E G PESF+VLVKE+Q L L ++L + Sbjct: 1320 GRTRMYERIVKGNNFLEAGLPESFHVLVKELQGLCLDMELLDE 1362 >gi|303327284|ref|ZP_07357726.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio sp. 3_1_syn3] gi|302863272|gb|EFL86204.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio sp. 3_1_syn3] Length = 1379 Score = 1543 bits (3994), Expect = 0.0, Method: Composition-based stats. Identities = 694/1368 (50%), Positives = 930/1368 (67%), Gaps = 14/1368 (1%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIA-PDERPNEGLQAAFKSVFPITAFSGAAM 73 K FGK + IP L+ +Q SY FL + D RP+EGL+ F +VFPI F+ A Sbjct: 6 KQFGKIKISLPIPHLLNLQIDSYQKFLQEGVPEADRRPDEGLEGVFHTVFPIEDFNKTAS 65 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEFVSYE PK+D +C+ + LTY P++I +RL+V+D DE +G ++I+DIKEQ IY G Sbjct: 66 LEFVSYEVQEPKYDQAECISKGLTYEAPMRIKVRLVVYDADEASGNRTIRDIKEQDIYFG 125 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 LPLMT+ GTF+I G +R++V+QL RSPGI F+HD G+ S K+LY+CR+IP +G W+D Sbjct: 126 TLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMRGSWLD 185 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAAD 253 +FD KDI++VRIDRRRK+P T A+GM E+IL FY + Y F D Sbjct: 186 FDFDHKDILYVRIDRRRKMPATILFKAMGMSKEQILDYFYSREQYLLEDGGRLFWEVRKD 245 Query: 254 LMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIV 313 L + + D G ++++GK +T + + E G+ + + D L G+++AED V Sbjct: 246 LYRKDNAYADITAPD-GNVLVKAGKPITKRSWRLICEAGIPAIEVRPDLLDGMFLAEDAV 304 Query: 314 NGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDA 373 ++GE+ EA D I LE + + I+ + +L+ + ++ IR+TLV D+ D++ A Sbjct: 305 APQSGEVLAEAADEITPGLLERMREAGIKRLSVLHTKGTDTSSSIRDTLVLDRIPDQQKA 364 Query: 374 LLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRK 433 +IYR +RP T +A S F+ LF + D YDLS VGR K+N RL +D P D+R + Sbjct: 365 QEEIYRRLRPSSPPTAEIAASFFDNLFRNPDYYDLSPVGRYKLNQRLGIDAPADLRTLND 424 Query: 434 EDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSV 493 EDI+ IK+LV L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S Sbjct: 425 EDILTAIKVLVQLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKERMSLQ 484 Query: 494 DIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARAR 553 +I ++MP DLIN KPV + + EFF +SQLSQ + NSLS +TH RRLSALG GG+ R R Sbjct: 485 EISTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGLTRER 544 Query: 554 AGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTND 613 AG E+RDVH +HYGRICP ET EG NIGL+ SLT+FA+VN YGFIETPYR V +G+VT++ Sbjct: 545 AGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTFAKVNDYGFIETPYRVVREGRVTDE 604 Query: 614 VVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVS 673 VV+L A E ++ +AQA++ LD +G EE V R GE + R+++ +D SP Q+VS Sbjct: 605 VVHLDASREGDQVVAQADARLDGEGHLLEEFVTVRVKGEVEMRHRDEVTLMDISPSQMVS 664 Query: 674 IAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAG 733 I+A+LIPFLE+DD+NR LMG NMQRQAVPLL++E P VGTGME VA+ SGA IVA G Sbjct: 665 ISAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPLVGTGMEVDVARDSGACIVAPADG 724 Query: 734 IVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDI 793 V+ DA RIV+ EGD+ GV Y L+KF +SNQN+C Q+P G V++ I Sbjct: 725 KVQYADADRIVVAY-EGDIYKDQGGVRAYDLLKFHKSNQNSCFGQKPTCYPGQIVKKGQI 783 Query: 794 IADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARD 853 +ADGP D G LALG+N++VAFMPW GYN+EDS+LISER V EDVFTSIHIEEFEV+ARD Sbjct: 784 LADGPGIDEGQLALGKNLVVAFMPWCGYNYEDSILISERTVKEDVFTSIHIEEFEVVARD 843 Query: 854 TKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLL 913 TKLGPEEITRDIPNVSE+ L+N+DE GII +GA V P DILVGKITPKGE+ +TPEEKLL Sbjct: 844 TKLGPEEITRDIPNVSEDMLRNLDESGIIRIGAAVKPDDILVGKITPKGETQLTPEEKLL 903 Query: 914 RAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDD 973 RAIFGEKA DV++TSL+VP GV GT++DV++FNR +K+ER++++E +L + + D Sbjct: 904 RAIFGEKARDVKNTSLKVPPGVEGTIIDVKVFNRRSGEKDERTLAIEAHDTSVLDQKEAD 963 Query: 974 EQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV-------LSSDLISEYPRSQWWQFAV 1026 L L + G+ + G KK V L+ + +++ P + Sbjct: 964 HMRALTERTRDLLAPHVLGKQIAASLPGKKKGEVLAEAGAALTEEQLAQLPVKKLAGL-F 1022 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 + ++V V L Y+ L+ + K EK+ GDD+PPGV+++VKV +A+KR + Sbjct: 1023 KSKEVNDEVAELLRAYDHEVDYLKAIYDAKREKVTEGDDLPPGVIKMVKVHIAIKRKLSV 1082 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG+VS ILP EDMPF DG PVDIVLNPLGVPSRMN+GQI ETHLGW Sbjct: 1083 GDKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWGAK 1142 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG+++ L++ + + LR ++ V G+ + DD+ + ++ ++G+ Sbjct: 1143 ELGRQLAELVD---SGAAMQVLRKEVKDVFGSEEVRALVDGMDDEEFVASVKKLRNGIVT 1199 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 TPVFD A EE I + A L+ G++ LYDG TG PF VT G +Y+LKL+H+V +K Sbjct: 1200 KTPVFDSATEEDIWGWMDKAGLENDGKTTLYDGRTGVPFRNRVTTGVMYILKLHHLVDEK 1259 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY+LQE LT+KSDDV GR Sbjct: 1260 IHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRV 1319 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 ++YE IV G++ E G PESFNVLVKE+ +LGL++ L K K Sbjct: 1320 KMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQEEGKKKPKR 1367 >gi|317485872|ref|ZP_07944734.1| DNA-directed RNA polymerase [Bilophila wadsworthia 3_1_6] gi|316922887|gb|EFV44111.1| DNA-directed RNA polymerase [Bilophila wadsworthia 3_1_6] Length = 1387 Score = 1541 bits (3990), Expect = 0.0, Method: Composition-based stats. Identities = 686/1367 (50%), Positives = 933/1367 (68%), Gaps = 13/1367 (0%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K FGK ++IP L+ +Q SY F+ + P+EGL+ F+SVFPI F+ A L Sbjct: 6 KQFGKIKVEVEIPHLLNLQVDSYRKFMQEGRT-ERLPDEGLEGVFRSVFPIEDFNRTASL 64 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 EFVSYE PK+D +C+ + LTY P++I +RL+V+DVD+ T A++++DIKEQ IY G Sbjct: 65 EFVSYEVGEPKYDQAECISKGLTYESPVRIKVRLVVYDVDDETEARTVRDIKEQDIYFGT 124 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 LPLMT+ GTF+I G +R++V+QL RSPGI F+HD G+ S K+LY+CR+IP +G W+D Sbjct: 125 LPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMRGSWLDF 184 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 +FD KDI++VRIDRRRK+P T L A+GM EIL FY K +Y D +L Sbjct: 185 DFDHKDILYVRIDRRRKMPATILLKAMGMSKTEILDCFYKKEIYELEDDGRVSWHFNPEL 244 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 + +VD G ++++GK +T + ++ GV+ + + + GL++AED+V+ Sbjct: 245 HRKEAAFADIVD-KEGNVLVKAGKPITKRAWRQMEAAGVEKIEVAPETPLGLFLAEDLVD 303 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 TGEI EA D I + + I I L+ + ++ IR+TLV DK + A Sbjct: 304 NATGEILAEAADEITAGLFDACREAGITTISALHTRGTDTSSSIRDTLVQDKTPTMEKAQ 363 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 +IYR +RP T +A S F+ LF + D YDLS VGR K+N RLN D+R + + Sbjct: 364 EEIYRRLRPSSPPTPEIAASFFDNLFRNGDYYDLSPVGRYKLNQRLNKTDHADLRTLADD 423 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DI+ IK+LV L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S + Sbjct: 424 DILDAIKVLVQLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKERMSIQE 483 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 + ++MP DLIN KPV + + EFF +SQLSQ + NSLS +TH RRLSALG GG+ R RA Sbjct: 484 VATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGLTRERA 543 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVH +HYGRICP ET EG NIGL+ SLT++A+VN YGFIETPYR + DG +T++ Sbjct: 544 GFEVRDVHVSHYGRICPIETPEGPNIGLIVSLTTYAKVNDYGFIETPYRVIRDGYMTDEF 603 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 V+L A E IAQAN+++D D ++ V R + ++ RE+I +D SP Q+VSI Sbjct: 604 VHLDASRETGHVIAQANAAVDADRRLVDDYVTARVGDDVLMAAREEITLMDISPSQMVSI 663 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 +A+LIPFLE+DD+NR LMG NMQRQAVPLL++E P VGTGME VA+ SGA I+A+ +G+ Sbjct: 664 SAALIPFLEHDDANRALMGSNMQRQAVPLLRSERPLVGTGMEVDVARDSGACILAESSGV 723 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 V DA RI++ + L P+ GV Y L+KF +SNQN+C Q P G V++ D++ Sbjct: 724 VHYADANRIIVAYDDPALYPNMGGVRAYDLLKFHKSNQNSCFGQVPSCVPGQIVKKGDVL 783 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGP+ G LALG+NML+AFMPW GYN+EDS+LISER+V ED++TS+HIEEFEV+ARDT Sbjct: 784 ADGPAIHDGGLALGKNMLIAFMPWCGYNYEDSVLISERVVKEDIYTSVHIEEFEVVARDT 843 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEITRDIPNV EE L+N+DE GII +GA V P DILVGKITPKGE+ +TPEEKLLR Sbjct: 844 KLGPEEITRDIPNVGEEMLRNLDESGIIRIGAPVKPEDILVGKITPKGETQLTPEEKLLR 903 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFG+KA DV++TSL+VP GV GTV+DV++FNR +K+ER+ ++E +I L + D Sbjct: 904 AIFGDKARDVKNTSLKVPPGVEGTVIDVKVFNRRSGEKDERTRNIEDYEISRLDAKEQDH 963 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL-------SSDLISEYPRSQWWQFAVQ 1027 + R + RL+ I+ G+ + G KK VL + +L+ P + Q Sbjct: 964 IRAITRRMRERLLPIVDGKQIATTLLGDKKGEVLAEAGAAMTEELLMALPVKKLADL-FQ 1022 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 ++V NV L VQY+ ++ + +K EK+ GDD+PPGV+++VKV +A+KR + G Sbjct: 1023 SKEVNENVGELLVQYDHQIEYIKSIYDSKREKVTEGDDLPPGVIKMVKVHIAIKRKLSVG 1082 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VSRILP EDMPF DG PVDIVLNPLGVPSRMN+GQI E HLGWA Sbjct: 1083 DKMAGRHGNKGVVSRILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMEVHLGWAARE 1142 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG+++ +++ + +R ++ + + ++ DD+ + + ++G+ Sbjct: 1143 LGRQLAEMVD---KGTALQSVRDEVKDIFASPEIAAEVDGMDDEEFRKSVLKLRNGIITY 1199 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA+E I + L A LD+ G+S+LYDG TGE + VT G +Y LKL+H+V +K+ Sbjct: 1200 TPVFDGAEESEIWNWLSRAGLDDDGKSVLYDGRTGEKLENRVTTGVMYYLKLHHLVDEKI 1259 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA+Y+LQE LT+KSDDV GR + Sbjct: 1260 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASYLLQEFLTVKSDDVTGRVK 1319 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 +YE IV G++ E G PESFNVLVKE+ +LGL++ L K K Sbjct: 1320 MYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQEEGKKRPKR 1366 >gi|46581332|ref|YP_012140.1| DNA-directed RNA polymerase subunit beta [Desulfovibrio vulgaris str. Hildenborough] gi|81404163|sp|Q727C7|RPOB_DESVH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|46450754|gb|AAS97400.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio vulgaris str. Hildenborough] gi|311234992|gb|ADP87846.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio vulgaris RCH1] Length = 1372 Score = 1541 bits (3989), Expect = 0.0, Method: Composition-based stats. Identities = 676/1367 (49%), Positives = 936/1367 (68%), Gaps = 14/1367 (1%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K FGK + IP L+ +Q SY FL A + R +EGL+ F+SVFPI F+ A L Sbjct: 6 KKFGKIDVSLPIPHLLNLQVDSYVKFLQEG-ATERRHDEGLEGVFRSVFPIEDFNRTASL 64 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 EFVSYE PK+D +C+ + LTY P++I +RL+V+DVDE +G ++I+DIKEQ IY G Sbjct: 65 EFVSYEVGEPKYDQPECISKGLTYEAPIRIKVRLVVYDVDEDSGNRTIRDIKEQEIYFGT 124 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 LPLMT+ GTF+I G +R++V+QL RSPGI F+HD G+ S K+LY+CRIIP +G W+D Sbjct: 125 LPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKTHSSRKVLYSCRIIPMRGSWLDF 184 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 +FD KDI++VRIDRRRK+P T A+GM +IL FY K Y D+ Sbjct: 185 DFDHKDILYVRIDRRRKMPATILFKAMGMSKTDILDYFYKKEFYRLDPMGRLMWEVQKDM 244 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 + D G ++++GK +T + + E G++ + + D + G+++AEDIVN Sbjct: 245 YRKDSAFVDIEDGKGG-TIVKAGKPITKRAWRLISEAGLETIEVAPDTIEGMFLAEDIVN 303 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 TGE+ EA D I +E + + I +P+L+ + ++ +R+TLV DK D + A Sbjct: 304 PATGEVLAEAADEITASLVENLREAGISRLPVLHTKGLETSSSLRDTLVLDKTPDMEAAQ 363 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 ++IYR +RP T +A S F+ LF +D YDLS VGR K+N RL +D D+R + + Sbjct: 364 VEIYRRLRPSSPPTPEIAASFFDNLFRSADYYDLSPVGRYKLNQRLGIDQSVDLRTLTDD 423 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DI+ I++L+ L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S + Sbjct: 424 DILRAIRVLLHLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSLQE 483 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 + ++MP DLIN KPV + + EFF +SQLSQ + N+LS +TH RRLSALG GG+ R RA Sbjct: 484 VSTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNALSEVTHKRRLSALGPGGLTRERA 543 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVH +HYGRICP ET EG NIGL+ SLT++A+VN +GFIETPYR + +G +T+++ Sbjct: 544 GFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYAKVNDFGFIETPYRIIREGALTDEI 603 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 +L A E+ +AQAN+++D DG +E V R G+ ++ R+++ +D SP Q+VSI Sbjct: 604 KFLDASREQGEVVAQANAAVDADGKLADEYVTARVRGDVLMSHRDEVTLMDISPSQMVSI 663 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 +A+LIPFLE+DD+NR LMG NMQRQAVPLL++E P VGTGME VA+ SGA I+A+ GI Sbjct: 664 SAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPIVGTGMEGDVARDSGACILAEGPGI 723 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 V DA RI++ G L P GV Y L K+ +SNQN+C QRP G V++ D++ Sbjct: 724 VRYADATRIIVSYENG-LYPDRGGVRAYDLQKYHKSNQNSCFGQRPTCHPGQIVKKGDVL 782 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGP + G+LALG+N++VAFMPW GYNFEDS+LISER+V EDVFTSIHIEEFEV+ARDT Sbjct: 783 ADGPGIEDGELALGKNLVVAFMPWCGYNFEDSILISERVVKEDVFTSIHIEEFEVVARDT 842 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEITRDIPNV E+ L+N+D GII +GA V P DILVGKITPKGE+ +TPEEKLLR Sbjct: 843 KLGPEEITRDIPNVGEDMLRNLDGSGIIRIGASVKPDDILVGKITPKGETQLTPEEKLLR 902 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFG+KA DV++TSL+VP G+ GT++DV++FNR +K+ER+ ++E + + + + D Sbjct: 903 AIFGDKARDVKNTSLKVPPGIEGTIIDVKVFNRRSGEKDERTRNIEDYETARIDKKEQDH 962 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL-------SSDLISEYPRSQWWQFAVQ 1027 L + RL + L G+ G +K VL + +L+ P + + Sbjct: 963 VRALGDALRDRLADTLVGKQIAVTLPGKRKGEVLAEAGAPMTRELLDALPVKRLAGL-FK 1021 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 +V V++ Y+ + L+ + +K EK+ GDD+PPGV+++VKV +A+KR + G Sbjct: 1022 SREVDEMVDTALEDYDRQVAFLKGIYDSKREKVTEGDDLPPGVIKMVKVHIAVKRKLNVG 1081 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VS ILP EDMPF DG PVDIVLNPLGVPSRMN+GQI ETHLGW Sbjct: 1082 DKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWGAKE 1141 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG+++ +++ + ++ LR ++ V + + + + + DD++ + + ++G+ Sbjct: 1142 LGRQLAEMLD---SGAAMATLRHEVKDVFRSATIAKLVDEMDDETFRKAVSKLRTGIVTK 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA EE I S + A +D G+++LYDG TG+ F VT G +Y+LKL+H+V +K+ Sbjct: 1199 TPVFDGASEEDIWSWIERAGMDGDGKTVLYDGRTGDKFYNRVTTGVMYILKLHHLVDEKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA+Y+LQE LT+KSDDV GR + Sbjct: 1259 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASYLLQEFLTVKSDDVTGRVK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 +YE IV G++ E G PESFNVLVKE+ +LGL++ L K K Sbjct: 1319 MYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQEEGKKRPKR 1365 >gi|258406192|ref|YP_003198934.1| DNA-directed RNA polymerase subunit beta [Desulfohalobium retbaense DSM 5692] gi|257798419|gb|ACV69356.1| DNA-directed RNA polymerase, beta subunit [Desulfohalobium retbaense DSM 5692] Length = 1363 Score = 1540 bits (3987), Expect = 0.0, Method: Composition-based stats. Identities = 678/1361 (49%), Positives = 946/1361 (69%), Gaps = 14/1361 (1%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K+FGK P+ ++IP L+ +Q SY FL ++ R ++GL+ F+SVFPI F+ A L Sbjct: 6 KYFGKIPQALEIPHLLSLQCDSYLDFLQADVPAASRADKGLEGVFRSVFPIEDFNKTATL 65 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 EFV+YE PK+D+ +C+ + LTY ++I +RL+V+DVDE + ++I+DIKEQ IY G Sbjct: 66 EFVNYELGEPKYDIKECISKGLTYEATVRIKVRLVVYDVDEESSHRTIRDIKEQDIYFGT 125 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 +PLMT+ GTFVI G +R++V+QL RSPG+ F+HD G++ S K+LY+ RIIP +G W+D Sbjct: 126 IPLMTEKGTFVINGTERVIVNQLQRSPGLIFEHDYGKSHSSRKVLYSSRIIPMRGSWIDF 185 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 +FD KDI+HVRIDRRRK+P T L A+G+ EEIL+ FY Y G+ F D Sbjct: 186 DFDHKDILHVRIDRRRKMPATILLKAMGLSREEILNYFYDVEHYYVIGNR-VFREVQKDY 244 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 + + D + G+ ++ +GK ++ + + + + G++ + + L + A ++++ Sbjct: 245 YRRSNAYVDITDAE-GKVLVAAGKAISKPMWRRIVKAGIERIEVDPMELAQQFAASELIH 303 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 ETGE+ E GD I ++++ + + +P L+ + + IR+TL DK +D + A Sbjct: 304 PETGEVLAEPGDQIAPETIDLLGETAETAVPTLFTSGLEVSTSIRDTLELDKTEDEESAQ 363 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 ++IY+ +RP T VA++ F+ LF + + YDLS VGR K+N RL +D P D + + E Sbjct: 364 IEIYKRLRPSSPPTSEVAKTFFDNLFRNKEYYDLSPVGRYKLNARLGIDLPLDHQTLSNE 423 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DI+ IK L L++ G DDID+LG RRVR VGE+++NQYR+GL+RMER+IKER+S + Sbjct: 424 DILRTIKHLTALKDAHGQPDDIDHLGKRRVRPVGELVENQYRIGLVRMERAIKERMSLRE 483 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 + ++MP DLIN KPV + + EFF +SQLSQ + N LS +TH RRLSALG GG++R RA Sbjct: 484 VATLMPHDLINPKPVTAVIKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLSRERA 543 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVHP+HYGRICP ET EG NIGL+ SLT++ RVN YGFIETPYR V G+VT++V Sbjct: 544 GFEVRDVHPSHYGRICPIETPEGPNIGLIVSLTTYGRVNPYGFIETPYRVVDKGQVTSEV 603 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 YL A EE IAQAN+ +D+ G F ++ V R GE +V R+++ +D SP Q+VS+ Sbjct: 604 KYLDADAEEGEIIAQANAPMDDQGRFVKDQVAARVEGEFAVVDRDEVTLMDISPNQIVSV 663 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 +++LIPFLE+DD+NR LMG NMQRQA PLL+ E P VGTG+E VVA++SGA I+A+ G Sbjct: 664 SSALIPFLEHDDANRALMGSNMQRQATPLLRTELPLVGTGLEGVVARNSGACILAEGRGQ 723 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 V DA R+V+R +G P + GV Y + KF +SNQ++ QRP+V G+ V + ++ Sbjct: 724 VTYADADRVVVRYEDGTA-PQSGGVACYTMQKFHKSNQSSSFGQRPVVHTGELVEKGSVL 782 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGPS + G+LALG+N+LVAFMPW GYNFEDS+LISER V EDV+TS+HIEEF+V+ARDT Sbjct: 783 ADGPSIEHGELALGKNLLVAFMPWCGYNFEDSILISERCVKEDVYTSMHIEEFDVVARDT 842 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEITRDIPNV E+ L+N+DE G+I +GA+V P DILVGKITPKGE+ +TPEE+LLR Sbjct: 843 KLGPEEITRDIPNVGEDMLRNLDESGMIRIGAKVRPDDILVGKITPKGETQLTPEERLLR 902 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFG+KA DV++TSL+VP G+ GTV+DV++FNR +K+ER+ +E +++ +L R++ Sbjct: 903 AIFGDKARDVKNTSLKVPPGIEGTVIDVKVFNRRSGEKDERTKEIEDQELAVLDRNEQQH 962 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV-------LSSDLISEYPRSQWWQFAVQ 1027 L +N+ ++ EI+ G G KK V LS + ++ P + V Sbjct: 963 IEGLSQNVRHKVWEIIQGHRVDQSIMGQKKGEVLVEANKTLSEEDLARLPIKKLRGVFVH 1022 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 E +E L +Y+ + ++ + K EK+ GDD+PPGV+++VKV +A+KR + G Sbjct: 1023 KE-TNEALEELLDEYDRNIQFIKSIYDQKREKVTEGDDLPPGVIKMVKVHIAIKRKLNVG 1081 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VS ILP EDMPF DGTP+DIVLNPLGVPSRMN+GQI ETHLGWA Sbjct: 1082 DKMAGRHGNKGVVSCILPEEDMPFFNDGTPMDIVLNPLGVPSRMNIGQIMETHLGWAAKE 1141 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG+++ ++ D DI LR +++V + S T + DD+ ++ ++ G+ Sbjct: 1142 LGQQLAKMVED---KADIQALRQEVKEVFHSDSVTTLVDTLDDEELVESVKRLDKGIATK 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA EE I L A L G+++LYDG TG+PF VTVGY+YMLKL+H+V +K+ Sbjct: 1199 TPVFDGAQEEEIWEWLERAGLPSDGKAVLYDGRTGDPFYSRVTVGYMYMLKLHHLVDEKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAA++LQE LT+KSDDV GR + Sbjct: 1259 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAHLLQEFLTVKSDDVQGRVK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 +YE IV G++ E+G PESFNVLVKE++ALGL + L + Sbjct: 1319 MYEKIVKGDNFLESGMPESFNVLVKELKALGLDVTLLHDEG 1359 >gi|120601489|ref|YP_965889.1| DNA-directed RNA polymerase subunit beta [Desulfovibrio vulgaris DP4] gi|158513865|sp|A1VAJ6|RPOB_DESVV RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|120561718|gb|ABM27462.1| DNA-directed RNA polymerase subunit beta [Desulfovibrio vulgaris DP4] Length = 1372 Score = 1540 bits (3987), Expect = 0.0, Method: Composition-based stats. Identities = 677/1367 (49%), Positives = 936/1367 (68%), Gaps = 14/1367 (1%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K FGK + IP L+ +Q SY FL A + R +EGL+ F+SVFPI F+ A L Sbjct: 6 KKFGKIDVSLPIPHLLNLQVDSYVKFLQEG-ATERRHDEGLEGVFRSVFPIEDFNRTASL 64 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 EFVSYE PK+D +C+ + LTY P++I +RL+V+DVDE +G ++I+DIKEQ IY G Sbjct: 65 EFVSYEVGEPKYDQPECISKGLTYEAPIRIKVRLVVYDVDEDSGNRTIRDIKEQEIYFGT 124 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 LPLMT+ GTF+I G +R++V+QL RSPGI F+HD G+ S K+LY+CRIIP +G W+D Sbjct: 125 LPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKTHSSRKVLYSCRIIPMRGSWLDF 184 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 +FD KDI++VRIDRRRK+P T A+GM +IL FY K Y D+ Sbjct: 185 DFDHKDILYVRIDRRRKMPATILFKAMGMSKTDILDYFYKKEFYRLDPMGRLMWEVQKDM 244 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 + D G ++++GK +T + + E G++ + + D + G+++AEDIVN Sbjct: 245 YRKDSAFVDIEDGKGG-TIVKAGKPITKRAWRLISEAGLETIEVAPDTIEGMFLAEDIVN 303 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 TGE+ EA D I +E + + I +P+L+ + ++ +R+TLV DK D + A Sbjct: 304 PATGEVLAEAADEITASLVENLREAGISRLPVLHTKGLETSSSLRDTLVLDKTPDMEAAQ 363 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 ++IYR +RP T +A S F+ LF +D YDLS VGR K+N RL +D D+R + + Sbjct: 364 VEIYRRLRPSSPPTPEIAASFFDNLFRSADYYDLSPVGRYKLNQRLGIDQSVDLRTLTDD 423 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DI+ I++L+ L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S + Sbjct: 424 DILRAIRVLLHLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSLQE 483 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 + ++MP DLIN KPV + + EFF +SQLSQ + N+LS +TH RRLSALG GG+ R RA Sbjct: 484 VSTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNALSEVTHKRRLSALGPGGLTRERA 543 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVH +HYGRICP ET EG NIGL+ SLT++A+VN +GFIETPYR + +G +T+D+ Sbjct: 544 GFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYAKVNDFGFIETPYRIIREGALTDDI 603 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 +L A E+ +AQAN+++D DG +E V R G+ ++ R+++ +D SP Q+VSI Sbjct: 604 KFLDASREQGEVVAQANAAVDADGKLADEYVTARVRGDVLMSHRDEVTLMDISPSQMVSI 663 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 +A+LIPFLE+DD+NR LMG NMQRQAVPLL++E P VGTGME VA+ SGA I+A+ GI Sbjct: 664 SAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPIVGTGMEGDVARDSGACILAEGPGI 723 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 V DA RI++ G L P GV Y L K+ +SNQN+C QRP G V++ D++ Sbjct: 724 VRYADATRIIVSYENG-LYPDRGGVRAYDLQKYHKSNQNSCFGQRPTCHPGQIVKKGDVL 782 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGP + G+LALG+N++VAFMPW GYNFEDS+LISER+V EDVFTSIHIEEFEV+ARDT Sbjct: 783 ADGPGIEDGELALGKNLVVAFMPWCGYNFEDSILISERVVKEDVFTSIHIEEFEVVARDT 842 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEITRDIPNV E+ L+N+D GII +GA V P DILVGKITPKGE+ +TPEEKLLR Sbjct: 843 KLGPEEITRDIPNVGEDMLRNLDGSGIIRIGASVKPDDILVGKITPKGETQLTPEEKLLR 902 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFG+KA DV++TSL+VP G+ GT++DV++FNR +K+ER+ ++E + + + + D Sbjct: 903 AIFGDKARDVKNTSLKVPPGIEGTIIDVKVFNRRSGEKDERTRNIEDYETARIDKKEQDH 962 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL-------SSDLISEYPRSQWWQFAVQ 1027 L + RL + L G+ G +K VL + +L+ P + + Sbjct: 963 VRALGDALRDRLADTLVGKQIAVTLPGKRKGEVLAEAGAPMTRELLDALPVKRLAGL-FK 1021 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 +V V++ Y+ + L+ + +K EK+ GDD+PPGV+++VKV +A+KR + G Sbjct: 1022 SREVDEMVDTALEDYDRQVAFLKGIYDSKREKVTEGDDLPPGVIKMVKVHIAVKRKLNVG 1081 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VS ILP EDMPF DG PVDIVLNPLGVPSRMN+GQI ETHLGW Sbjct: 1082 DKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWGAKE 1141 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG+++ +++ + ++ LR ++ V + + + + + DD++ + + ++G+ Sbjct: 1142 LGRQLAEMLD---SGAAMATLRHEVKDVFRSATIAKLVDEMDDETFRKAVSKLRTGIVTK 1198 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA EE I S + A +D G+++LYDG TG+ F VT G +Y+LKL+H+V +K+ Sbjct: 1199 TPVFDGASEEDIWSWIERAGMDGDGKTVLYDGRTGDKFYNRVTTGVMYILKLHHLVDEKI 1258 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA+Y+LQE LT+KSDDV GR + Sbjct: 1259 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASYLLQEFLTVKSDDVTGRVK 1318 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 +YE IV G++ E G PESFNVLVKE+ +LGL++ L K K Sbjct: 1319 MYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQEEGKKRPKR 1365 >gi|91763154|ref|ZP_01265118.1| DNA-directed RNA polymerase [Candidatus Pelagibacter ubique HTCC1002] gi|91717567|gb|EAS84218.1| DNA-directed RNA polymerase [Candidatus Pelagibacter ubique HTCC1002] Length = 1363 Score = 1538 bits (3982), Expect = 0.0, Method: Composition-based stats. Identities = 733/1365 (53%), Positives = 982/1365 (71%), Gaps = 7/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + F VRK FGK E + IP+LIEVQK SY L + ++G FKS+ Sbjct: 1 MQLSFTQKKNVRKSFGKLSETLSIPNLIEVQKNSYKQ-LTDFDSEAGDLSKGFDRVFKSI 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + A LE+VSY + PKFD ++C+ R L++ LK TLRL+V+++D+ K I Sbjct: 60 FPIEDLNDKATLEYVSYRLEKPKFDTEECIQRGLSFTSALKCTLRLVVYEIDQENNTKDI 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KEQ +YMG++P+MT GTF+ G+QR+VV+Q+HRSPG+ FDHDKG++ SGKLL+ C Sbjct: 120 LSAKEQEVYMGEVPMMTDSGTFITNGVQRVVVNQMHRSPGVFFDHDKGKSHASGKLLFNC 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP++G W+D+E+D KD ++ +IDR++K+ ++ LMALG+ EI FY K YS Sbjct: 180 RVIPNRGSWLDLEYDVKDFLYFKIDRKKKIFASTLLMALGLTKSEIADEFYDKDTYSFDA 239 Query: 243 D--FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W + + S + D TG VI+ G K+ K L G+K + ++ Sbjct: 240 KTGKWKTKFNPENY-KAKNFSEEVTDAKTGNVVIKLGDKINFLTAKKLASDGLKDILVSQ 298 Query: 301 DCLCGLYVAEDI-VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + L G Y+ ++ V+ + E G +++ +++I + I I I +S+N Y+ Sbjct: 299 ESLIGKYLHNEVKVSDDEEEGTFGIGTELNDTIIKQILEANITSIEISITNSINKGPYLL 358 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 T++ DKN + DA+ +IY+V+RPG+ T +A +FN LFF SD+YDLS VGRVKMN R Sbjct: 359 TTILNDKNNSKNDAITEIYKVLRPGEPPTVEIATQIFNNLFFSSDRYDLSDVGRVKMNSR 418 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 LNL+ D + +R +DIIAI+ ++DLR+GK +DDID+LGNRRVRSVGE+++NQ R+G+ Sbjct: 419 LNLECSDKITILRNDDIIAIVHKMLDLRDGKDEVDDIDHLGNRRVRSVGELVENQARIGV 478 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RMER+IKE+++++DI+S MPQDLINAKP+ ++ +FF SSQLSQ + N LS ITH R Sbjct: 479 YRMERAIKEKMTTLDIESAMPQDLINAKPLTVSLKDFFVSSQLSQFMDQTNPLSEITHKR 538 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 R+SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL+++A++N YGFIE Sbjct: 539 RVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYAKINKYGFIE 598 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 +PY+KV +G V + V YLSAMEE IAQAN+ +D+ G EELV CR +L Sbjct: 599 SPYKKVLNGVVQDKVEYLSAMEETKYTIAQANAKIDKSGKILEELVPCRENLNFVLSNPS 658 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 KID+ID SPKQ+VS+AASLIPFLENDD+NR LMG NM RQAVPLLK E+P VGTG+ES V Sbjct: 659 KIDYIDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQAVPLLKPESPLVGTGIESDV 718 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SG IVA R G V+++D RIVI++ E D + SGVDIY L KF+RSNQNTC+NQ+ Sbjct: 719 ALDSGVTIVASRDGTVDKIDGKRIVIKATEET-DFTKSGVDIYNLQKFKRSNQNTCINQK 777 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 PLV+VGD+V+ DIIADGPST LG+LALG+N+ VAFMPW GYNFEDS+LISER V++DVF Sbjct: 778 PLVRVGDKVKSGDIIADGPSTKLGELALGKNVTVAFMPWQGYNFEDSILISERCVTDDVF 837 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TS+HI E+EVMARDTKLG EEITRDIPNV+EE LKN+DE GI+ +GAEV GDILVGK+T Sbjct: 838 TSVHIVEYEVMARDTKLGEEEITRDIPNVNEEALKNLDESGIVYIGAEVKAGDILVGKVT 897 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKG+S PEEKLLR+IFGEKA+DV DTSL++ G SGTVVDVR+FNRHGI+K+ERSI++ Sbjct: 898 PKGDSASGPEEKLLRSIFGEKAIDVTDTSLKMSRGSSGTVVDVRVFNRHGIEKDERSITI 957 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ER +I+ + +DK E+ IL+R+I R +IL G + K + T L + I++ + Sbjct: 958 ERAEIDTVQQDKIVEEEILERSIKQRANQILSGASLTKKIKDLDEGTKLDLETINKININ 1017 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 ++ V + + ++ LK QY +K +++RF++K+ KI+ GDD+ P V+++VKVFVA Sbjct: 1018 DVFKITVGNVNDEASIAQLKDQYNQAKQDIQERFEDKVLKIRSGDDLLPSVMKMVKVFVA 1077 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR ++ GDKM+GRHGNKG+VS+I+P EDMP+ +DG PVDIVLNPLGVPSRMNVGQI ET Sbjct: 1078 IKRRLRPGDKMSGRHGNKGVVSKIVPVEDMPYREDGRPVDIVLNPLGVPSRMNVGQILET 1137 Query: 1140 HLGWACVGLGKKIKSLINDYKAN-GDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 HLGWAC G+++K L+N+ + SFL+ V G I + + E Sbjct: 1138 HLGWACKEFGEEVKRLVNENNKKFEKTEKISSFLKSVYGKEVFDGGIDKLNKTEFSDLCE 1197 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 ++G+ +STPVFDGA E+ ++ ML +A L SGQ+ L+DG TGE FDRPVTVG IYMLK Sbjct: 1198 NIQNGIAISTPVFDGAKEKDVSEMLELAKLPTSGQTNLWDGRTGEMFDRPVTVGIIYMLK 1257 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+K Sbjct: 1258 LHHLVEDKIHARSTGPYSLVTQQPLGGKAQLGGQRFGEMEVWALEAYGASYTLQEILTVK 1317 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 SDDV GR +VYE+IV G + FE+G PESFNVLVKE+++L L+I+L Sbjct: 1318 SDDVAGRVKVYETIVKGEENFESGIPESFNVLVKEIKSLALNIEL 1362 >gi|71083810|ref|YP_266530.1| DNA-directed RNA polymerase [Candidatus Pelagibacter ubique HTCC1062] gi|88909625|sp|Q4FLL2|RPOB_PELUB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|71062923|gb|AAZ21926.1| DNA-directed RNA polymerase [Candidatus Pelagibacter ubique HTCC1062] Length = 1363 Score = 1538 bits (3982), Expect = 0.0, Method: Composition-based stats. Identities = 733/1365 (53%), Positives = 983/1365 (72%), Gaps = 7/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + F VRK FGK E + IP+LIEVQK SY L + ++G FKS+ Sbjct: 1 MQLSFTQKKNVRKSFGKLAETLSIPNLIEVQKNSYKQ-LTDFDSEAGDLSKGFDRVFKSI 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + A LE+VSY + PKFD ++C+ R L++ LK TLRL+V+++D+ K I Sbjct: 60 FPIEDLNDKATLEYVSYRLEKPKFDTEECIQRGLSFTSALKCTLRLVVYEIDQENNTKDI 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KEQ +YMG++P+MT GTF+ G+QR+VV+Q+HRSPG+ FDHDKG++ SGKLL+ C Sbjct: 120 LSAKEQEVYMGEVPMMTDSGTFITNGVQRVVVNQMHRSPGVFFDHDKGKSHASGKLLFNC 179 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP++G W+D+E+D KD ++ +IDR++K+ ++ LMALG+ EI FY K YS Sbjct: 180 RVIPNRGSWLDLEYDVKDFLYFKIDRKKKIFASTLLMALGLTKSEIADEFYDKDTYSFDA 239 Query: 243 D--FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W + + S + D TG VI+ G K+ K L G+K + ++ Sbjct: 240 KTGKWKTKFNPENY-KAKNFSEEVTDAKTGNVVIKLGDKINFLTAKKLASDGLKDILVSQ 298 Query: 301 DCLCGLYVAEDI-VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + L G Y+ ++ V+ + E G +++ +++I + I I I +S+N Y+ Sbjct: 299 ESLIGKYLHNEVKVSDDEEEGTFGIGTELNDTIIKQILEANISSIEISITNSINKGPYLL 358 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 T++ DKN + DA+ +IY+V+RPG+ T +A +FN LFF SD+YDLS VGRVKMN R Sbjct: 359 TTILNDKNNSKNDAITEIYKVLRPGEPPTVEIATQIFNNLFFSSDRYDLSDVGRVKMNSR 418 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 LNL+ D + +R +DIIAI+ ++DLR+GK +DDID+LGNRRVRSVGE+++NQ R+G+ Sbjct: 419 LNLECSDKITILRNDDIIAIVHKMLDLRDGKDEVDDIDHLGNRRVRSVGELVENQARIGV 478 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RMER+IKE+++++DI+S MPQDLINAKP+ ++ +FF SSQLSQ + N LS ITH R Sbjct: 479 YRMERAIKEKMTTLDIESAMPQDLINAKPLTVSLKDFFVSSQLSQFMDQTNPLSEITHKR 538 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 R+SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL+++A++N YGFIE Sbjct: 539 RVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYAKINKYGFIE 598 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 +PY+KV +G V + V YLSAMEE IAQAN+ +D+ G EELV CR +L Sbjct: 599 SPYKKVLNGIVQDKVEYLSAMEETKYTIAQANAKIDKSGKILEELVPCRENLNFVLSNPS 658 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 KID+ID SPKQ+VS+AASLIPFLENDD+NR LMG NM RQAVPLLK E+P VGTG+ES V Sbjct: 659 KIDYIDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQAVPLLKPESPLVGTGIESDV 718 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SG IVA R G V+++D RIVI++ E D + SGVDIY L KF+RSNQNTC+NQ+ Sbjct: 719 ALDSGVTIVASRDGTVDKIDGKRIVIKATEET-DFTKSGVDIYNLQKFKRSNQNTCINQK 777 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 PLV+VGD+V+ DIIADGPST LG+LALG+N+ VAFMPW GYNFEDS+LISER V++DVF Sbjct: 778 PLVRVGDKVKSGDIIADGPSTKLGELALGKNVTVAFMPWQGYNFEDSILISERCVTDDVF 837 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TS+HI E+EVMARDTKLG EEITRDIPNV+EE LKN+DE GI+ +GAEV GDILVGK+T Sbjct: 838 TSVHIVEYEVMARDTKLGEEEITRDIPNVNEEALKNLDESGIVYIGAEVKAGDILVGKVT 897 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKG+S PEEKLLR+IFGEKA+DV DTSL++ G SGTVVDVR+FNRHGI+K+ERSI++ Sbjct: 898 PKGDSASGPEEKLLRSIFGEKAIDVTDTSLKMSRGSSGTVVDVRVFNRHGIEKDERSITI 957 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ER +I+ + +DK E+ IL+R+I R +IL G + K + T L ++I++ + Sbjct: 958 ERAEIDTVQQDKIVEEEILERSIKQRANQILSGASLTKKIKDLDEGTKLDLEIINKININ 1017 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 ++ V + + ++ LK QY +K +++RF++K+ KI+ GDD+ P V+++VKVFVA Sbjct: 1018 DVFKITVGNVNDEASIAQLKDQYNQAKQDIQERFEDKVLKIRSGDDLLPSVMKMVKVFVA 1077 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +KR ++ GDKM+GRHGNKG+VS+I+P EDMP+ +DG PVDIVLNPLGVPSRMNVGQI ET Sbjct: 1078 IKRRLRPGDKMSGRHGNKGVVSKIVPVEDMPYREDGRPVDIVLNPLGVPSRMNVGQILET 1137 Query: 1140 HLGWACVGLGKKIKSLINDYKAN-GDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 HLGWAC G+++K L+N+ + SFL+ V G I + + E Sbjct: 1138 HLGWACKEFGEEVKRLVNENNKKFEKTEKISSFLKSVYGKEVFDGGIEKLNKTEFSDLCE 1197 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 ++G+ +STPVFDGA E+ ++ ML +A L SGQ+ L+DG TGE FDRPVTVG IYMLK Sbjct: 1198 NLQNGIAISTPVFDGAKEKDVSEMLELAKLPTSGQTNLWDGRTGEMFDRPVTVGIIYMLK 1257 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+K Sbjct: 1258 LHHLVEDKIHARSTGPYSLVTQQPLGGKAQLGGQRFGEMEVWALEAYGASYTLQEILTVK 1317 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 SDDV GR +VYE+IV G + FE+G PESFNVLVKE+++L L+I+L Sbjct: 1318 SDDVAGRVKVYETIVKGEENFESGIPESFNVLVKEIKSLALNIEL 1362 >gi|297569429|ref|YP_003690773.1| DNA-directed RNA polymerase, beta subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925344|gb|ADH86154.1| DNA-directed RNA polymerase, beta subunit [Desulfurivibrio alkaliphilus AHT2] Length = 1373 Score = 1538 bits (3982), Expect = 0.0, Method: Composition-based stats. Identities = 715/1373 (52%), Positives = 967/1373 (70%), Gaps = 12/1373 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R+RK F K I++ P LIE+Q SY+ FL M PD+R +EGLQ FKSVFPI F Sbjct: 5 RRIRKNFAKTRAIVEKPHLIEMQSRSYEKFLQMETPPDQRLDEGLQGIFKSVFPIKDFKD 64 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 A LEFV+Y F PK+ V++C+ R LT+ VP+K+T+RL+ +D D +GA+SI+DIKEQS+ Sbjct: 65 ACSLEFVNYTFGEPKYTVEECIQRGLTFEVPVKMTVRLVTYDTDPDSGAQSIRDIKEQSV 124 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+G +PLMTK G FVI G +R++VSQL RSPG+ + HD G+ GKLLY+ RIIP +G Sbjct: 125 YLGSIPLMTKAGVFVINGTERVIVSQLQRSPGLFYTHDGGKTHAGGKLLYSARIIPVRGS 184 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+D+EFD+KDI++VRIDRRRK PVT+ L LG SE++L FY S Sbjct: 185 WVDLEFDAKDILYVRIDRRRKFPVTTLLKTLGYGSEDLLRYFYQIESVSIEEGKLKKGFD 244 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 MVG ++ L+ GE + G+K+ L + + + G+ L I + L G A Sbjct: 245 PE-TMVGQRLPHDLISPADGEVLARKGRKVGKALARKIADAGITGLEIEAADLVGKVTAS 303 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 +VN ETGEI I + E LEEI + +++ IL +D + + R TL D+ + R Sbjct: 304 PVVNPETGEIMIPVNTELSETMLEEISAAGVKNFDILLIDGIKVSDSFRKTLALDRVESR 363 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 +DAL++IYR +RP T VAES FN LFF + YDLS VGR K+N RL +DT ++R Sbjct: 364 EDALIEIYRRLRPSSPPTLEVAESFFNNLFFSPELYDLSVVGRFKLNARLGIDTDINIRT 423 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + EDI+ + LV L++ +G IDDID+LGNRRVR+VGE+++NQYR+GL+RMER+IKER+ Sbjct: 424 LTVEDIMLAVLHLVRLKDSQGPIDDIDHLGNRRVRTVGELVENQYRMGLVRMERAIKERM 483 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 S +++S+MP DLIN KP+ +A+ EFF +SQLSQ + N LS +TH RRLSALG GG++ Sbjct: 484 SLQEVESLMPHDLINPKPITAAIKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLS 543 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVHPTHYGRICP ET EG NIGL+ SL S+ARVN YGFIETPYRKV + KV Sbjct: 544 RERAGFEVRDVHPTHYGRICPVETPEGPNIGLIVSLASYARVNEYGFIETPYRKVENRKV 603 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 +N + Y++A++EE++ IA A S D G + + R AGE ++ +++ ++D SP Q Sbjct: 604 SNQIEYMTALDEEDQVIAPARSETDGKGKLVDGPLIARQAGEVMISIADEVTYMDVSPNQ 663 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 +VS+ ASL+PFLENDD+NR LMG NMQRQ VPLL++EAP VGTG+ES VA+ SG ++A Sbjct: 664 LVSVGASLVPFLENDDANRALMGSNMQRQGVPLLRSEAPLVGTGLESAVAQDSGVCLLAG 723 Query: 731 RAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRR 790 G+VE+VDA RIV+R E D T+G+ IYRL K+++SNQNTC QRPLV+ G V++ Sbjct: 724 GDGVVEEVDANRIVVRYDEPGTDGFTTGIGIYRLEKYKKSNQNTCFTQRPLVEPGVRVKK 783 Query: 791 NDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVM 850 DI+ADGP+ D G+LAL +N+ VAFMPW GYN+EDS+L++ER++ D +TS HIE FE + Sbjct: 784 GDILADGPACDHGELALAKNVTVAFMPWRGYNYEDSILVNERLLKNDTYTSFHIEVFETV 843 Query: 851 ARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEE 910 ARDTKLG EE+TRDIPNVSEE L+N+DE GI+ VGAE+ GDILVGKITPKGE+ ++PEE Sbjct: 844 ARDTKLGKEEVTRDIPNVSEEALRNLDESGIVRVGAEIKAGDILVGKITPKGETQLSPEE 903 Query: 911 KLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARD 970 KLLRAIFGEKA DV+DTSLRVP GV G VVD ++F+R G++K+ERS+++E +I+ L RD Sbjct: 904 KLLRAIFGEKAGDVKDTSLRVPPGVEGVVVDAKVFSRKGVEKDERSLAIEEAEIKALERD 963 Query: 971 KDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK------KSTVLSSDLISEYPRSQWWQF 1024 +DE +L R++ + L ++L G+ + K K K ++ +++ + S+ + Sbjct: 964 LEDELNLLARSVRNGLADLLVGKKVKNAVKNRKGEELLAKDKKITREVLEKLSPSEIKKL 1023 Query: 1025 AVQD-EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 + ++ + L ++++ ++ R++ +I ++Q GDD+PPGV+R+VKV++A+KR Sbjct: 1024 DYAGRDSLEGEINLLFDRHDSQVKMVRSRYEARIARLQKGDDLPPGVIRMVKVYLAIKRK 1083 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 + GDKMAGRHGNKG+VSRILP EDMP+ DGT VDIVLNPLGVPSRMNVGQ+ E HLG Sbjct: 1084 LAVGDKMAGRHGNKGVVSRILPEEDMPYFADGTAVDIVLNPLGVPSRMNVGQLLEIHLGL 1143 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSG 1203 A LG++++ L D++ ++ L V + + ++D DD +L +A + G Sbjct: 1144 AAKKLGEQVQRLA----QTRDLAAVKKKLAAVYSKEEYEQLLADLTDDDLLELASRMGKG 1199 Query: 1204 VPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMV 1263 + ++TPVFDGA EE I +L A LDE GQ LYDGLTGE FD VTVG +YMLKL+H+V Sbjct: 1200 LHMATPVFDGAQEEEIRRLLVEAGLDEIGQLDLYDGLTGEKFDNQVTVGSMYMLKLHHLV 1259 Query: 1264 SDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVV 1323 DK++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDDV Sbjct: 1260 DDKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYTLQEFLTVKSDDVG 1319 Query: 1324 GRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 GRT++YE IV GN+ E G PESF+VLVKE+Q L L ++L + +E Sbjct: 1320 GRTKMYERIVKGNNFLEAGLPESFHVLVKELQGLCLDMELLDELPPVRENEKE 1372 >gi|308272985|emb|CBX29589.1| DNA-directed RNA polymerase subunit beta [uncultured Desulfobacterium sp.] Length = 1366 Score = 1538 bits (3981), Expect = 0.0, Method: Composition-based stats. Identities = 714/1365 (52%), Positives = 961/1365 (70%), Gaps = 11/1365 (0%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FGK I++IPDLI +Q SY FL M++ P++R + GLQA FKSVFPI ++ Sbjct: 8 KKRLRKNFGKIQRIVEIPDLIGMQLESYKRFLQMDVVPEKREDIGLQAVFKSVFPIKDYT 67 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 G+A LE+VSY F K V +C+ R +TY +P++IT+RL+V+DVD+ TG SI+DIKEQ Sbjct: 68 GSASLEYVSYRFGEIKHGVAECIHRGMTYEIPVRITVRLVVYDVDKETGISSIRDIKEQE 127 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 IY G +PLMT GTF++ G +R+VV QLHRS G+ FDHDKG+ SGK++Y+ RIIP +G Sbjct: 128 IYFGTVPLMTNKGTFIVNGTERVVVGQLHRSSGVFFDHDKGKTHSSGKIIYSSRIIPVRG 187 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 W+D+E D KDI+++RIDRRRK P+T F A G E++LS FY RG L Sbjct: 188 SWIDLEIDPKDIVYIRIDRRRKFPITIFFKAFGYTPEDLLSYFYKSEKIIIRGKSLYKEL 247 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 DL K + + D DTGE V + G+ T L+K L + + I + + + Sbjct: 248 R-EDLCKDQKFTRDIKDPDTGEIVAKKGRPYTPKLIKKLISSKIDAIPINIEDIFERAFS 306 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 I ET I ++A ++++E S+ ++ + I + IL+ D +++ IR TL DK Sbjct: 307 YTIYEPETNNILVKANEIVNEDSISKLKDAGINEFGILFFDGASSSDSIRKTLSVDKVAS 366 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 +++AL++IYR +RPG+ T VA++ + LFF + YDLS+VGRVK+N RL +++ D++ Sbjct: 367 KEEALVEIYRRLRPGNPVTPEVAQNFIDNLFFKTAYYDLSSVGRVKINQRLGIESSPDLK 426 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 +R+EDI+ K L+DLR+ +G +DDID+LGNRR+R+VGE+L+NQYR+GL+RMER+IKER Sbjct: 427 ILRREDILLTAKTLIDLRDTQGIVDDIDHLGNRRIRAVGELLENQYRIGLVRMERAIKER 486 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 +S ++D++MP DLIN KPV + V EFF +SQLSQ + N LS TH RRLSALG GG+ Sbjct: 487 MSLQEVDTLMPHDLINPKPVSAIVKEFFGTSQLSQFMDQTNPLSETTHKRRLSALGPGGL 546 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 R RAG E+RDVHP+HYGRICP ET EG NIGL+ SL+++ARVN YGFIETPYR V DG Sbjct: 547 TRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLSTYARVNDYGFIETPYRVVNDGT 606 Query: 610 VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPK 669 VTN+V +L A EE++ IAQAN+ +DE G +T +V R AGE + V +E I +D SP Sbjct: 607 VTNEVKFLDAFEEKDLPIAQANAPIDEKGRYTNPIVTSRMAGEFMTVQKEDIALMDVSPN 666 Query: 670 QVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVA 729 Q+VS++ASLIPFLENDD+NR LMG NMQRQAVPL+ +EAP VGTG+E VVAK SG IVA Sbjct: 667 QLVSVSASLIPFLENDDANRALMGSNMQRQAVPLIVSEAPLVGTGIEGVVAKDSGVTIVA 726 Query: 730 KRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVR 789 +R GIVE VDA RI I S + V IY L K+ RSNQNTC N RP+V G V+ Sbjct: 727 ERDGIVESVDAYRI-ILSHDPSDKRYDKHVTIYNLSKYMRSNQNTCFNHRPIVVKGQRVQ 785 Query: 790 RNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEV 849 +IIADGP+T+ G+L+LG+N+ VAFMPW G+NFEDS+L++ER+V + V+TS+HIEEFE+ Sbjct: 786 AGEIIADGPATEKGELSLGKNVTVAFMPWGGFNFEDSILVNERLVRDGVYTSVHIEEFEI 845 Query: 850 MARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPE 909 +ARDTKLG E+ITRDIPNV +E LK++DE GII +GAEV PGDILVGKITPK E+ ++PE Sbjct: 846 VARDTKLGKEDITRDIPNVGDEALKDLDESGIIRLGAEVEPGDILVGKITPKDETQLSPE 905 Query: 910 EKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLAR 969 EKLLRAIFGEKA DV+DTSLRVP GV GTV+D ++F+R GI+K+ER+ +E +I++L R Sbjct: 906 EKLLRAIFGEKAGDVKDTSLRVPPGVEGTVIDAKVFSRRGIEKDERTCFIEETEIKVLER 965 Query: 970 DKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-----KSTVLSSDLISEYPRSQWWQF 1024 ++DDE +++ +++ L GQ + K K K + ++++S+ P +Q Sbjct: 966 NRDDELAVIEEIARGPVIQALDGQICNTPIKKGKKVLIAKGDKIDAEILSDIPLAQLEGV 1025 Query: 1025 AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPI 1084 ++D V + L QY T ++ D F+ I + + GDD+PPGV+++VKV++AMKR + Sbjct: 1026 VLKDAGVTEQLHDLLEQYRTQRTACHDNFEKHISRYEKGDDLPPGVIKMVKVYIAMKRKL 1085 Query: 1085 QSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWA 1144 GDKMAGRHGNKG+VSRILP EDMP+ +DGTPVD+VLNPLGVPSRMN GQI E HLG A Sbjct: 1086 SVGDKMAGRHGNKGVVSRILPQEDMPYFEDGTPVDMVLNPLGVPSRMNAGQILEIHLGRA 1145 Query: 1145 CVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGV 1204 LG ++ LI +I LR + K+ + IS DD + +K+GV Sbjct: 1146 AKSLGDQLNRLI----EENNIVSLRDKMNKIFNDKDSNKIISQMDDQELCDYVGNYKNGV 1201 Query: 1205 PVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVS 1264 ++TPVFDGA E I ++L A +GQ+ L+DG TGE F +TVG +YMLKL+H+V Sbjct: 1202 HMATPVFDGAKETEIKALLEEAGQYTTGQATLFDGRTGENFKGKITVGTMYMLKLHHLVD 1261 Query: 1265 DKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVG 1324 DK++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAA+ LQE LT+KSDD+ G Sbjct: 1262 DKLHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAHALQEFLTVKSDDMAG 1321 Query: 1325 RTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 RTR+YE IV G + E G PESF V+ +E+Q+LGL I+L + Sbjct: 1322 RTRMYEKIVKGQNMLEPGIPESFKVMTRELQSLGLDINLLEEHKE 1366 >gi|32491271|ref|NP_871525.1| hypothetical protein WGLp522 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|41018021|sp|Q8D233|RPOB_WIGBR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|25166478|dbj|BAC24668.1| rpoB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 1342 Score = 1535 bits (3974), Expect = 0.0, Method: Composition-based stats. Identities = 681/1365 (49%), Positives = 941/1365 (68%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++DIP L+ +Q S+ F+ + GL+AAFKS+ Sbjct: 1 MVYSYTERKRIRKDFGKRPQVLDIPYLLAIQINSFKKFIEKD----PEGLYGLEAAFKSI 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L+++SY F+V +C R T++ PL++ L+LI++ + + Sbjct: 57 FPIKSYSGNAELKYISYRLGCSVFNVKECQTRGTTFSAPLRVILQLIIYCDE---SKHVV 113 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+IKEQ +YMG++PLMT +GTF+I G +R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 114 KNIKEQEVYMGEIPLMTDNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 173 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KD + +RIDRRRK+PVT L AL EIL+ F+ K+ + R Sbjct: 174 RIIPYRGSWLDFEFDAKDHLFIRIDRRRKLPVTVLLKALNFSDGEILNIFFEKVNFFIRK 233 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G I+ G+++T+ +++L+ + + + + Sbjct: 234 KNLLMELIPKRL-RGETALFDIC--ENGITYIKKGRRITAKHIRNLENDKISQITVPFEY 290 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A++ + +T + I A + + +F S + I L+ + +++ +YI TL Sbjct: 291 IIGKVSAKNYFDKKTEKPIITANTELTVDLMLNLFKSGYKSIETLFTNDLDHGSYISETL 350 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D D+ AL++IYR+MRPG+ T AE++F LFF D+YDLS+VGR+K N L++ Sbjct: 351 RIDSTTDKTSALIEIYRMMRPGEPPTKEAAENLFYNLFFSEDRYDLSSVGRMKFNKSLSI 410 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 ++ + + K DII + K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 411 NSSEGSSLLDKFDIIEVTKKLIDIRNGKGDVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 470 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 471 ERAVKERLSLGDLDTIMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 530 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 531 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPY 590 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VTN++ YLSA+EE IAQAN++LD++G F E V CR GE L R +++ Sbjct: 591 RCVLNGIVTNNIHYLSAIEEGKFIIAQANTNLDKNGYFINEFVTCRNKGESSLFNRNQVN 650 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L E P +GTGME VA Sbjct: 651 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLMTEKPLIGTGMERAVAVD 710 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR GIV+ +D+ +I+I+ + ++ G+DIY L K+ RSNQNTC+NQ P V Sbjct: 711 SGVTAVAKRGGIVQFLDSSKIIIKVNQEEIIKEKIGIDIYHLTKYVRSNQNTCINQTPCV 770 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + D V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDSML+SE++V ED FT+I Sbjct: 771 CLNDVVERGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSMLVSEKVVHEDRFTTI 830 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E M+RDTKLG EEIT DIPNVSE L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 831 HIQELACMSRDTKLGSEEITSDIPNVSETSLLKLDESGIVYIGAEVKGGDILVGKVTPKG 890 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV IF R G+ K++R++ +E Sbjct: 891 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVEIFTRDGVKKDKRALEIEYM 950 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 QI+ +D +E I ++ ++ L K + D +SE + Sbjct: 951 QIKEAKKDIYEELEIFKSSLKIQIEYFL-------------KENNIEYDSLSELLKGNIK 997 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 ++ + E L ++ K E + + KI+KI GDD+ PGVL++VKV++A+KR Sbjct: 998 NLIFKNNNLNNIFEELINKFLRLKEEFEKKLEIKIKKITQGDDLAPGVLKIVKVYLAVKR 1057 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVD+VLNPLGVPSRMN+GQI ETHLG Sbjct: 1058 QIQPGDKMAGRHGNKGVISKINPIEDMPYDENGVPVDMVLNPLGVPSRMNIGQILETHLG 1117 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G I +++ + K I + ++ + D ++++A + Sbjct: 1118 LAAKGIGNIIDNMLKNNKKIYKIKKFIQNAYNLGIGIRQKVELDHFSDKEIIKLANNLRK 1177 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDGA E I +L+ + ESGQ L+DG TGE FDRPVTVGY+YMLKLNH+ Sbjct: 1178 GMPIATPVFDGAQEIEIKELLKFSGNPESGQITLFDGQTGEKFDRPVTVGYMYMLKLNHL 1237 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV Sbjct: 1238 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYSLQEMLTVKSDDV 1297 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 GRT++Y++IV G+ E G PESFNVL+KE+++LG++I+LE + Sbjct: 1298 NGRTKMYKNIVDGSHLMEPGMPESFNVLLKEIRSLGINIELEENN 1342 >gi|118602788|ref|YP_904003.1| DNA-directed RNA polymerase subunit beta [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|158512581|sp|A1AX75|RPOB_RUTMC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|118567727|gb|ABL02532.1| DNA-directed RNA polymerase subunit beta [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 1360 Score = 1533 bits (3970), Expect = 0.0, Method: Composition-based stats. Identities = 677/1365 (49%), Positives = 956/1365 (70%), Gaps = 8/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+R FG I+ PDL+ +Q S++ F+ + + + GL A F+SV Sbjct: 1 MAYSFTEKKRIRNNFGSRESILTEPDLLAIQIDSFNSFIQKD--SKTKQDIGLHAVFQSV 58 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFT--GAK 120 FPITA +G A +E+V YE PKF+V++C R +T+A L++ L L++FD + T + Sbjct: 59 FPITAVNGYAQIEYVDYELQEPKFNVEECKLRGVTFASTLRVKLSLVLFDKNGSTLKKKR 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 IK I E+ IY+G LPLMT+ GTFVI G +R+VVSQLHRSPG+ F+HDKG+ SGK+L+ Sbjct: 119 KIKQIIEEDIYLGQLPLMTETGTFVINGTERVVVSQLHRSPGVIFEHDKGKTHSSGKILF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D E+D + ++VRIDRRRK+PVT+ L A+G+ SE IL TF+ K Sbjct: 179 SSRIIPYRGSWLDFEYDHHEHLYVRIDRRRKLPVTTLLRAMGLSSEGILETFFEKTTIKL 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + L +V + ++E G+++T+ +K LK+ G+K + + Sbjct: 239 KAKSCDLNMVPIRLQR-TIAEFDIV--ANQDVIVEKGRRITAKHVKLLKKVGIKSINVPL 295 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L ++ DI + +TGEI I A +I E+ LE + ++I+ I ILY+++ AYI + Sbjct: 296 EYLLDKVISADIFDKDTGEILISANTIILEEVLELLNINKIKKIEILYINASETGAYISD 355 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D+ + +A + IY VMRPG+ +T +FN LFF +D+YDLS VGR+K+N RL Sbjct: 356 TLRLDETQTEIEARMSIYHVMRPGEPATEDAVNLLFNNLFFKNDRYDLSKVGRMKLNRRL 415 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 + + + +DII++IK+L+++++G ++DD+D L NRRVR++GEM++NQ+R+GL+ Sbjct: 416 GIGSETGEHVLTNDDIISVIKLLINIKDGNDSVDDVDTLANRRVRAIGEMIENQFRVGLV 475 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+E+ ++E ++ + D + PQDLIN+KPV +AV EFF SSQLSQ + VN LS +TH RR Sbjct: 476 RVEKVVREGLNLAETDELTPQDLINSKPVSAAVREFFGSSQLSQFMDQVNPLSGVTHKRR 535 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVHP+HYGR+CP ET EG NIGL+++L +A+ N+YGF+ET Sbjct: 536 ISALGPGGLTRERAGFEVRDVHPSHYGRLCPIETPEGPNIGLINTLAVYAKTNSYGFLET 595 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PY+ V +GKVT +VVY+SA++E IAQ N+ +++ G +L+ CR E +LV K Sbjct: 596 PYQVVKNGKVTKEVVYVSAIDEITHTIAQVNAIVNDKGKLMSDLISCRHKNEFVLVNSSK 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + ID KQ+ S+AASLIPFLE+DD+NR LMG NMQRQAVP+LKAE P VGTG+E VVA Sbjct: 656 VTLIDIDSKQIASVAASLIPFLEHDDANRALMGSNMQRQAVPVLKAEKPLVGTGIERVVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 S + AK +G+VE VDA RIVIR S GVDIY L K+ RSNQNTC+NQ+P Sbjct: 716 TDSRVCVTAKHSGVVEAVDASRIVIRVDSKKTKASELGVDIYNLTKYSRSNQNTCINQKP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVK GD++ D++ADGPSTD+G+LALG+NM +AFMPW+GYNFEDS+LISE+++ ED +T Sbjct: 776 LVKTGDKISAADVLADGPSTDMGELALGQNMKIAFMPWNGYNFEDSILISEKVIQEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 +IHIEE +RDTKLGPEEIT DIPNVSE L +DE G++ VGA V GDILVGK+TP Sbjct: 836 TIHIEELTAYSRDTKLGPEEITADIPNVSELALAKLDEVGVVYVGARVKGGDILVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 K E+ ++PEEKLLRAIFGEKA +V+D+SLRV + SG V+DV+IF R ++K++R++S++ Sbjct: 896 KSETVLSPEEKLLRAIFGEKANNVKDSSLRVGASKSGVVIDVQIFTRDRVEKDDRALSID 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 E++E + +D DDE I+D +I+ R+ L G K LS+ L+ + Sbjct: 956 AERLERIKKDIDDEFGIIDGDIFRRVRLKLSGNMLSKVAGDIKAGEKLSAKLMKKLDNKD 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 + V+D V + V +L Q + + + F+ + KI G ++PPGV+++VKV+VA Sbjct: 1016 ISKLKVEDAAVNKEVAALIKQAKAKQIEFKKFFEEEKAKINEGAELPPGVMKMVKVYVAT 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 + +Q GDKMAGRHGNKG++SR+ P EDMP+L DG+ +D+VLNPLGVPSRMNVGQ+ E H Sbjct: 1076 SKTLQVGDKMAGRHGNKGVISRVSPVEDMPYLVDGSTIDVVLNPLGVPSRMNVGQVLEVH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LG+A GLG KI +++ D K + +R FL++V + E ++ + D+ ++ +A Sbjct: 1136 LGYAAKGLGYKITAML-DEKRTDMVKQIRDFLDEVYNSYGKQENLASFSDEEIIELASNL 1194 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++TPVFDG E+ I S+L++ADL ESGQ LYDG TGEPFDR VTVGY++MLKLN Sbjct: 1195 REGVPMATPVFDGIKEKDIKSLLKLADLPESGQEQLYDGRTGEPFDRHVTVGYMHMLKLN 1254 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V+DK++ARSTG YSLVTQQPL GK+ GGQR GEMEVW ++AYGAA+ L+EMLT+KSD Sbjct: 1255 HLVNDKMHARSTGPYSLVTQQPLSGKAQFGGQRFGEMEVWALEAYGAAHTLREMLTVKSD 1314 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV GR ++Y+SIV G + E+ PESFNVLVKE+++LG+ ++LE Sbjct: 1315 DVGGRAKMYKSIVDGKNLTESIMPESFNVLVKEIRSLGIDVELEQ 1359 >gi|295698608|ref|YP_003603263.1| DNA-directed RNA polymerase, beta subunit [Candidatus Riesia pediculicola USDA] gi|291157153|gb|ADD79598.1| DNA-directed RNA polymerase, beta subunit [Candidatus Riesia pediculicola USDA] Length = 1342 Score = 1533 bits (3968), Expect = 0.0, Method: Composition-based stats. Identities = 679/1365 (49%), Positives = 958/1365 (70%), Gaps = 23/1365 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 G+ + R+RK F K P+++ +P L+ +Q S+ F+ G+++A SV Sbjct: 1 MGLDYKNKRRIRKNFSKRPQVLSVPYLLSIQVDSFSQFINGCRD----KKSGIESALHSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G A L +++Y + P FDV +C R TY+ LK+ LRL+V+D + +K I Sbjct: 57 FPIRSYNGCAELRYINYRLEDPIFDVKECRTRSTTYSSSLKVKLRLVVYDKE---SSKKI 113 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 + IK+Q +YMG++P+MT++GTF+I G +R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 114 QKIKDQEVYMGEIPIMTENGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKILYNA 173 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD I VRIDRRRK+P T L A+G + EE+L+ F+ K + + Sbjct: 174 RIIPYRGSWLDFEFDIKDHIFVRIDRRRKLPATVILRAMGYNEEEMLNLFFKKTTFKRYQ 233 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + L L G S ++ G++ + G ++T+ +++L++ ++ + + S+ Sbjct: 234 NKFFMKLIPKRL-RGETASFDII--KDGKKYVHKGNRITTLHIENLEKDNIQEIEVPSEY 290 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G + +D N G++ A I ++ LE++ + I L+ + ++ +YI NTL Sbjct: 291 LIGKIIDKDYFNQSDGKLICSANTKISKEILEDLKTTNHETIQTLFTNDLDRGSYISNTL 350 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D KD+ DAL++IYR+MRPG+ T AE +F LFF D+YDLS+VGR+K N+ LN Sbjct: 351 RIDSTKDQFDALIEIYRMMRPGEPPTKESAEHLFKNLFFSEDRYDLSSVGRMKFNLSLNK 410 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++DII +I+ L+D+R+GKG +DDID+LGNRR+RS+GEM +NQ+RLGL+R+ Sbjct: 411 SRDQGNNVLDQQDIIDVIRKLIDIRDGKGEVDDIDHLGNRRIRSIGEMAENQFRLGLIRV 470 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D++S+ PQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 471 ERAVKERLSLGDLESLSPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 530 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 531 ALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLSVYARTNQYGFLETPY 590 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G V+ND+ YLSA+EE N IAQAN+ L+EDGSF +LV CR GE L +++++ Sbjct: 591 RVVRNGIVSNDIHYLSAIEEGNHIIAQANTILNEDGSFYTDLVTCRNKGESNLFNKKQVE 650 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTGME VVA Sbjct: 651 YMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGMERVVAID 710 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG I+AKR+G V+ VD+ +IVI++ DL + G+DIY L+K+ RSNQNTC+NQ P V Sbjct: 711 SGVTIIAKRSGKVQYVDSSKIVIKTDHHDLLSNDFGIDIYDLIKYSRSNQNTCINQVPCV 770 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +GD+V+ +I+ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+LISER+V +D FT+I Sbjct: 771 SLGDKVKSGEILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILISERIVQKDRFTTI 830 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV L +DE GI+ +GAEV G+ILVGK+TPKG Sbjct: 831 HIQELSCISRDTKLGPEEITADIPNVGVSALSKLDESGIVYIGAEVIGGEILVGKVTPKG 890 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G GTV+DV+IF R G+ K++R++ +E+ Sbjct: 891 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTCGTVIDVQIFTRDGVKKDKRTLEIEKI 950 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 + + + +D +E IL+ ++ + + L + I + + Sbjct: 951 RTKEMEKDLHEELEILESCLFCEVRDFLIRNG-------------MEKSEIDSLEGRKLF 997 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 Q +++++ ++ + + +Y + +++ K +I GDD+ PGVL++VKV +A+KR Sbjct: 998 QIDLKNDQAKKTLNQFQRRYYELQKTFKEKLNKKSHQITQGDDLSPGVLKIVKVHLAVKR 1057 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1058 QIQPGDKMAGRHGNKGVISKINPIEDMPYDQEGNPVDIVLNPLGVPSRMNIGQILETHLG 1117 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G +I +I + + + + ++ D VL +A K+ Sbjct: 1118 MAAKGVGNQIDRMIRRKEKIEKLRKFIQKAYDIGIGTYQRVNLDEFSDKEVLELANNLKN 1177 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P+STPVFDGA E+ I ML +A L SGQ +L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1178 GLPMSTPVFDGAKEDEIKKMLNLAGLPTSGQIVLFDGCTGEKFERLVTVGYMYMLKLNHL 1237 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGA++ LQEMLT+KSDDV Sbjct: 1238 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASHTLQEMLTVKSDDV 1297 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 GRT++Y++IV+G E G P+SFNVL+KE+++LG++I+LE R Sbjct: 1298 NGRTKMYKNIVSGEHKMEPGMPDSFNVLLKEIRSLGINIELERKR 1342 >gi|148244878|ref|YP_001219572.1| DNA-directed RNA polymerase subunit beta [Candidatus Vesicomyosocius okutanii HA] gi|158514265|sp|A5CW25|RPOB_VESOH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|146326705|dbj|BAF61848.1| DNA-directed RNA polymerase beta subunit [Candidatus Vesicomyosocius okutanii HA] Length = 1360 Score = 1531 bits (3965), Expect = 0.0, Method: Composition-based stats. Identities = 675/1365 (49%), Positives = 950/1365 (69%), Gaps = 8/1365 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+R FG I+ PDL+ +Q S++ F+ + + + GL +SV Sbjct: 1 MAYSFTEKKRIRNNFGSRESILTEPDLLAIQIDSFNSFIQADNKIKQ--DIGLHNVLQSV 58 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS- 121 FPITA +G A +E+V Y+ PKF+V++C R +T+A L++ L L++FD + T K Sbjct: 59 FPITAVNGYAQIEYVDYQLKEPKFNVEECKLRGVTFASTLRVKLNLVLFDKNGSTLKKKR 118 Query: 122 -IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +K I E+ +Y+G LPLMT+ GTFVI G +R+VVSQLHRSPG+ F+HDKG+ SGK+L+ Sbjct: 119 KVKQIIEEDVYLGQLPLMTETGTFVINGTERVVVSQLHRSPGVIFEHDKGKTHSSGKILF 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D E+D + ++VRIDRRRK+PVT+ L A+G+ SE+IL TF+ K Sbjct: 179 SSRIIPYRGSWLDFEYDHHEHLYVRIDRRRKLPVTTLLRAMGLSSEDILETFFEKTPVKL 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + L +V V+E G+++T+ +K L + G+K + Sbjct: 239 KAKSCDLSMLPIHLQR-TIAEFDIVVNQH--VVVEKGRRITAKHVKLLGKAGIKSINAPL 295 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L + DI+N +TGEI I A + E+ LE + ++++ I ILY++S AYI + Sbjct: 296 EYLLDKVICADIINKDTGEILISANTITSEEVLELLNTNKVKKIEILYINSSETGAYISD 355 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D+ + +A + IY VMRPG+ +T +FN LFF +D+YDLS VGR+K+N RL Sbjct: 356 TLRLDETQTEIEARMSIYHVMRPGEPATEDAVNLLFNNLFFKNDRYDLSKVGRMKLNRRL 415 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 + + +DII +IK+L+++++G ++DDID L NRRVR++GEM++NQ+R+GL+ Sbjct: 416 GISRETGEHVLTNDDIIRVIKLLINIKDGNDSVDDIDTLANRRVRAIGEMIENQFRIGLV 475 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+E++++E ++ + D + PQDLIN+KPV +AV EFF SSQLSQ + VN LS +TH RR Sbjct: 476 RVEKAVREGLNLAETDELTPQDLINSKPVSAAVREFFGSSQLSQFMDQVNPLSGVTHKRR 535 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG+ R RAG E+RDVHP+HYGR+CP ET EG NIGL+++L +A+ N+YGF+ET Sbjct: 536 ISALGPGGLTRERAGFEVRDVHPSHYGRLCPIETPEGPNIGLINTLAVYAKTNSYGFLET 595 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PY+ V +GKVT +V+Y+SA++E IAQAN+ +D+ G ++L+ CR E +LV + Sbjct: 596 PYQIVKNGKVTKEVIYVSAIDEITHTIAQANALVDDRGKLMDDLISCRHKNEFVLVDSSE 655 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + ID KQ+ S+AASLIPFLE+DD+NR LMG NMQRQAVP+LKAE P VGTG+E VVA Sbjct: 656 VTLIDIDSKQISSVAASLIPFLEHDDANRALMGSNMQRQAVPVLKAEKPLVGTGIERVVA 715 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 K S + AK G+VE VDA RIVIR + GVDIY L K+ RSNQNTC+NQ+P Sbjct: 716 KDSRVCVTAKHGGVVEAVDASRIVIRVDSKKTKANELGVDIYNLTKYSRSNQNTCINQKP 775 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+ GD++ D++ADGPSTD+G+LALG+NM +AFMPW+GYNFEDS+LISE++V ED +T Sbjct: 776 LVRTGDKITFGDVLADGPSTDMGELALGQNMKIAFMPWNGYNFEDSILISEKVVQEDRYT 835 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 +IHIEE +RDTKLGPEEIT DIPNVSE L +DE G++ VGA V GDILVGK+TP Sbjct: 836 TIHIEELTAYSRDTKLGPEEITSDIPNVSESALSKLDEVGVVYVGARVKGGDILVGKVTP 895 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 K E+ ++PEEKLLRAIFGEKA +V+D+SLR+ + SG V+DV++F R ++K+ R++S++ Sbjct: 896 KSETVLSPEEKLLRAIFGEKANNVKDSSLRIGASKSGVVIDVQVFTRDRVEKDIRALSID 955 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 E++E + +D DDE I+D +I+ R+ L G + LS L+ ++ Sbjct: 956 AERLERIKKDIDDEFSIIDGDIFRRIRLKLLGNVLSKAIGDIRIGERLSIKLMKKFDNKD 1015 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 +F V++ V + V L Q + K E FK + KI G ++PPGV+++VKV+VA Sbjct: 1016 IAKFKVENATVNKEVAVLVKQAKAKKVEFEKFFKKEKAKINEGAELPPGVMKMVKVYVAT 1075 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 ++ +Q GDKMAGRHGNKG++SR+ P EDMP+L DG+ +DIVLNPLGVPSRMNVGQ+ E H Sbjct: 1076 RKTLQVGDKMAGRHGNKGVISRVSPVEDMPYLADGSTIDIVLNPLGVPSRMNVGQVLEVH 1135 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LG+A GLG KI +++ D + + +R FL+KV E ++ + ++ ++ +A Sbjct: 1136 LGYAAKGLGYKIAAIL-DERRPDMVKQIRVFLDKVYNLHGKKEDLTLFSNEEIIELANNL 1194 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++TPVFDG E+ I S+LR+ADL ESGQ LYDG TGEPFDR VTVGY++MLKLN Sbjct: 1195 REGVPMATPVFDGIREQDIKSLLRLADLPESGQEQLYDGRTGEPFDRHVTVGYMHMLKLN 1254 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTG YSLVTQQPL GK+ GGQR GEMEVW ++AYGAA+ L+EMLT+KSD Sbjct: 1255 HLVDDKMHARSTGPYSLVTQQPLSGKAQFGGQRFGEMEVWALEAYGAAHTLREMLTVKSD 1314 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV GR ++Y+SIV G + E+ PESFNVLVKE+++LG+ ++LE Sbjct: 1315 DVAGRAKMYKSIVDGKNLTESVMPESFNVLVKEIRSLGIDVELEQ 1359 >gi|242278652|ref|YP_002990781.1| DNA-directed RNA polymerase subunit beta [Desulfovibrio salexigens DSM 2638] gi|259494178|sp|C6C179|RPOB_DESAD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|242121546|gb|ACS79242.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio salexigens DSM 2638] Length = 1366 Score = 1531 bits (3963), Expect = 0.0, Method: Composition-based stats. Identities = 670/1370 (48%), Positives = 940/1370 (68%), Gaps = 14/1370 (1%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK FGK + IP L+E+Q S+ FL +AP R + GL+ F+SVFPI F+ A Sbjct: 4 LRKIFGKIKVTLPIPHLLELQVDSFKKFLQEGVAPASRADVGLEGVFRSVFPIEDFNKTA 63 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE+VSY+ PK+D+D+C+ + LTY P++I +RL+VFDVDE T +++I+DIKEQ IY Sbjct: 64 SLEYVSYDIGEPKYDMDECISKGLTYEAPIRIKVRLVVFDVDEETESRTIRDIKEQDIYF 123 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +PLM++ GTF+I G +R++V+QL RSPGI F+HD G+ S K+LY+CRIIP +G W+ Sbjct: 124 GTVPLMSEQGTFIINGTERVIVNQLQRSPGIIFEHDSGKTHTSRKVLYSCRIIPMRGSWL 183 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D +FD KDI++VRIDRRRK+P T L A+G+ ++IL +Y Y Sbjct: 184 DFDFDHKDILYVRIDRRRKMPATVLLKAMGLSKQDILDYYYDVEEYQIDRHIVRRK-VVE 242 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 + L ++ G+ ++ K++T K L GV+++ + L G + DI Sbjct: 243 NQYRKENAWVDLC-LEDGKVIVARDKQITKFGWKKLVRGGVEYIEVDPKSLVGQFAFNDI 301 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 + +TGE+ EA D I E+ E I ++D+ +L+ + ++ +R++++ DK D + Sbjct: 302 TDPDTGEVIAEAADEITEEIFERIQEVGLKDVKVLHTQGADVSSALRDSMMLDKTTDVES 361 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 A ++IYR +RP T +A + F LF SD YDLS+VGR K+N RLN++TP ++R + Sbjct: 362 AQIEIYRRLRPSSPPTAEIAANFFENLFRSSDYYDLSSVGRYKLNARLNIETPLELRTLT 421 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 EDI+ +K+L L++ G DDIDNLGNRRVR VGE+++NQYR+GL+RMER+IKER+S Sbjct: 422 NEDILTAVKVLCKLKDSHGPADDIDNLGNRRVRPVGELVENQYRIGLVRMERAIKERMSL 481 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 ++ ++MP DLIN KPV + + EFF +SQLSQ + N LS +TH RRLSALG GG+ R Sbjct: 482 QEVATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRE 541 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVH +HYGRICP ET EG NIGL+ SLT++++VN +GFIE+PYR + D +T+ Sbjct: 542 RAGFEVRDVHVSHYGRICPIETPEGPNIGLIVSLTTYSKVNDFGFIESPYRTIKDSTMTD 601 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 +++Y A E +AQAN+ +DE GSFT LV CR G+ + PRE +D SP Q V Sbjct: 602 EILYYDATREVGHVVAQANAPIDEKGSFTNPLVTCRLNGDVSMHPREDATLMDISPSQTV 661 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S++A+LIPFLE+DD+NR LMG NMQRQAVPLLK P VGTGME+ VA+ SG+ ++A+ Sbjct: 662 SVSAALIPFLEHDDANRALMGSNMQRQAVPLLKTSQPLVGTGMEANVAQDSGSCVLAEND 721 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G+++ VDA R+V+R +G P T GV Y L K+ +SNQN+C QRP + +G V++ D Sbjct: 722 GVIDYVDAERLVVRYDDGVY-PDTGGVKHYELQKWHKSNQNSCYGQRPRLPIGTPVKKGD 780 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 ++ADGP G+LALG+N+LVAFMPW GYNFEDS+LISER+V EDVFTS+HIEEFE++AR Sbjct: 781 VLADGPGIKDGELALGKNLLVAFMPWCGYNFEDSILISERVVKEDVFTSVHIEEFELVAR 840 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLGPEE+TRDIPNVSEE L+N+DECGII +GA + P DILVGKITPKGE+ +TPEEKL Sbjct: 841 DTKLGPEEVTRDIPNVSEEMLRNLDECGIIRLGARIAPDDILVGKITPKGETQLTPEEKL 900 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFG+KA DV++TSL+VP G+ GTVVDV++FNR +K++R+ ++E ++ + Sbjct: 901 LRAIFGDKARDVKNTSLKVPPGIEGTVVDVKVFNRRSGEKDDRTRNIEDFELAKHDMKES 960 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKST-------VLSSDLISEYPRSQWWQFA 1025 L ++ +++ + G KK +++ ++++E P + Sbjct: 961 KHIESLTNKTRVKIADVVANKQIAQTLMGRKKGEVLAEAGHIITDEILAEVPLKKLGGL- 1019 Query: 1026 VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 D++ V+ L +Y+ I++ + K EK+ GDD+PPGV+++VKV++A+KR + Sbjct: 1020 FADKETNEAVKQLLAEYDKQIRIIKGIYDVKREKVTEGDDLPPGVIKMVKVYIAVKRKLS 1079 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG+VS ILP +DMPF +GTP+DIVLNPLGVPSRMN+GQI ETHLGWA Sbjct: 1080 VGDKMAGRHGNKGVVSNILPEQDMPFFDNGTPMDIVLNPLGVPSRMNIGQIMETHLGWAA 1139 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 + LG+K ++++ +A G I R ++ + E I DD+ + + G+ Sbjct: 1140 LALGQKFAAMLDTGEALGVI---RQEIKDTFESEDVYELIDSLDDEEFRLAVNKAREGIV 1196 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 TPVFDGA EE I ++ + + G+ LYDG TG+PF VTVG +Y+LKL+H+V + Sbjct: 1197 TKTPVFDGATEEEIWDLVGKTGIGDDGKVTLYDGRTGDPFHNRVTVGVMYILKLHHLVDE 1256 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 K++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY+LQE LT+KSDDV GR Sbjct: 1257 KIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGR 1316 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 ++YE IV G++ E G PESFNVLVKE+ +LGL ++L + +A + Sbjct: 1317 VKMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVNLLQDEVEETADKK 1366 >gi|317153964|ref|YP_004122012.1| DNA-directed RNA polymerase subunit beta [Desulfovibrio aespoeensis Aspo-2] gi|316944215|gb|ADU63266.1| DNA-directed RNA polymerase, beta subunit [Desulfovibrio aespoeensis Aspo-2] Length = 1367 Score = 1531 bits (3963), Expect = 0.0, Method: Composition-based stats. Identities = 673/1372 (49%), Positives = 924/1372 (67%), Gaps = 17/1372 (1%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK FG + IP L+E+Q SY FL + P R + GL++ F+SVFPI F+ A Sbjct: 4 LRKKFGNIVNTLPIPHLLELQVDSYKRFLQLGTPPASRGDFGLESVFRSVFPIEDFNKTA 63 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 L+FV YE PK+DVD+C+ + LTY P++IT+RL+VFDVDE T ++I+DIKEQ IY Sbjct: 64 SLDFVKYEIGEPKYDVDECISKGLTYETPIRITVRLVVFDVDEETDNRTIRDIKEQDIYF 123 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G LPLMT GT+VI G +R++V+QL RSPGI F+HD G++ S K+LY+ RIIP +G W+ Sbjct: 124 GTLPLMTDKGTYVINGTERVIVNQLQRSPGIIFEHDSGKSHSSRKVLYSSRIIPMRGSWL 183 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D +FD KDI++VRIDRRRK+P T L A+G+ +IL +Y Y+ A Sbjct: 184 DFDFDHKDILYVRIDRRRKMPATILLKAMGLSRSDILEYYYDIESYTLLKSK-VQRSVVA 242 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 + + + D D + ++ G +T G K + GVK + I D L GL++A DI Sbjct: 243 EQFRKEIAFADIKDGD--QILVAKGTPVTRGAWKKIVRAGVKSVEIDPDTLVGLFLAADI 300 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 V+ + GE+ EA D + + + I + I+++ +L+ ++ ++ +R+TL+ DK D + Sbjct: 301 VD-KNGEVIAEAADELTQDMITRIREAGIKELNVLHTRGLDVSSSLRDTLLLDKTTDLET 359 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 A ++IYR +RP T +A + F LF +D YDLS+VGR K+N RLN + ++R + Sbjct: 360 AQIEIYRRLRPSSPPTPEIAANFFENLFRSADYYDLSSVGRYKLNSRLNQEVDLNIRTLT 419 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 EDI+ +K L+ L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S Sbjct: 420 NEDILLAVKELLRLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSL 479 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 ++ ++MP DLIN KPV + + EFF +SQLSQ + N LS +TH RRLSALG GG+ R Sbjct: 480 QEVATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRE 539 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVH +HYGRICP ET EG NIGL+ SLT++A+VN YGFIETPYR V + +VT+ Sbjct: 540 RAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYAKVNDYGFIETPYRMVRNKQVTS 599 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 +V Y+ A +E +AQAN+ LDE G+F V R +G+ L E++ +D SP Q V Sbjct: 600 EVHYMDASKEAKEVVAQANAPLDETGTFVNPRVNARISGDVQLTLAEEVTCMDISPSQTV 659 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 SI+A+LIPFLE+DD+NR LMG NM RQAVPLL+AE P VGT ME VA+ SGA ++A+ Sbjct: 660 SISAALIPFLEHDDANRALMGSNMMRQAVPLLQAEQPLVGTDMEGPVARDSGACVLAEED 719 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G+V VDA R+++ G ++ G Y K+ +SNQN+C QRP V+VG +++ D Sbjct: 720 GVVHFVDAERVIVNYDNGIYG-NSGGAKHYEFQKWHKSNQNSCFGQRPRVQVGQVIKKGD 778 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 ++ADGP + G+LALG+N+LVAFMPW G+NFEDS+LISERMV EDVFTSIHIEEFE++AR Sbjct: 779 VLADGPGIEDGELALGKNLLVAFMPWCGFNFEDSILISERMVKEDVFTSIHIEEFELVAR 838 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLGPEE+TRDI NVSEE L+N+DECGII +GA + P DI+VGKITPKGE+ +TPEEKL Sbjct: 839 DTKLGPEEVTRDISNVSEEMLRNLDECGIIRIGARIKPDDIMVGKITPKGETQLTPEEKL 898 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFG+KA DV++TSL+VP G+SGT+VDV++FNR DK+ER+ ++E ++ + Sbjct: 899 LRAIFGDKARDVKNTSLKVPPGISGTIVDVKVFNRRSGDKDERTKAIEDAELAAFDAKEM 958 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKK------STVLSSDLISEYPRSQWWQFAV 1026 L ++ + G+ G KK V+ + I P + Sbjct: 959 KHIASLTDATREKIWAAVKGETYKKDLAGNKKALLGKIGDVVDREAIDSVPVKKLLGIFD 1018 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 +D ++ + Y+ +++ + K EK+ GDD+PPGV+++VKV+VA+KR + Sbjct: 1019 KDP--NEQIKMIMADYDQHIHFIKNLYDVKREKVTEGDDLPPGVIKMVKVYVAVKRKLSV 1076 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG+VS ILP EDMPF +DGTP+DIVLNPLGVPSRMN+GQI ETHLG A Sbjct: 1077 GDKMAGRHGNKGVVSSILPEEDMPFFEDGTPMDIVLNPLGVPSRMNIGQIMETHLGMAGR 1136 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG+++ ++ +R ++ I D+ ++ ++ + G+ Sbjct: 1137 KLGEQLNAM----YEENAFKDMRKDVKGFFEDKDMDILIDSLSDEQLVEAIKKVRKGIVA 1192 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 TPVFDGA+EE I L A L + G+ ILYDG TGEPF VTVG +Y+LKL+H+V +K Sbjct: 1193 KTPVFDGANEEEIWGWLEKAGLADDGKFILYDGRTGEPFHSRVTVGVMYILKLHHLVDEK 1252 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY+LQE LT+KSDDV GR Sbjct: 1253 IHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVQGRV 1312 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 ++YE IV G++ E G PESFNVLVKE+ +LGL + L K + + P Sbjct: 1313 KMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVTLHYEDRKRQSTAPQRP 1364 >gi|189184701|ref|YP_001938486.1| DNA-directed RNA polymerase subunit beta [Orientia tsutsugamushi str. Ikeda] gi|189181472|dbj|BAG41252.1| DNA-directed RNA polymerase beta chain [Orientia tsutsugamushi str. Ikeda] Length = 1374 Score = 1528 bits (3956), Expect = 0.0, Method: Composition-based stats. Identities = 719/1357 (52%), Positives = 989/1357 (72%), Gaps = 6/1357 (0%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAF 68 R+RK FGK + IP+LIEVQK SY+ FL + + D R N+GLQ S+FPI Sbjct: 7 KKRIRKNFGKINLVSSIPNLIEVQKNSYNKEFLQLGVPVDCRENKGLQGVLNSIFPIHDL 66 Query: 69 SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 G+A+LEFV Y+FD PK+DV++C+ R L+Y LKITL LIV D + + +K IK IKEQ Sbjct: 67 DGSAILEFVRYDFDEPKYDVEECIQRGLSYTAALKITLSLIVLDDSDKSDSKEIKGIKEQ 126 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++Y GD+PLMT +GTF+I G +R+VVSQ+HRSPG+ FDHD G+ +GKL+Y+ R+IP + Sbjct: 127 AVYFGDIPLMTANGTFIINGTERVVVSQMHRSPGVFFDHDDGKTHSTGKLIYSARVIPYR 186 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+D EFD+KD+++ RIDR+RK+ VT+ LMALGM S +IL+ +Y Y + + W Sbjct: 187 GSWLDFEFDAKDLLYFRIDRKRKLYVTTLLMALGMSSHDILNFYYESAAYKKSENGWIVD 246 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L+ ++ L+D TG+ ++ +G+K+T + K L +KGVK + + +D L G + Sbjct: 247 FLPE-LVSTKHLAYDLIDAQTGKVLLNAGQKITVRIAKMLADKGVKQILVKNDSLVGKLL 305 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AED+VN +TGE+ + G+ I L + +I + +L V Y+RNTL DKNK Sbjct: 306 AEDLVNNQTGEVLLGVGEEITNDILTIVNDLQITTVRVLAV-GGQCGPYVRNTLFLDKNK 364 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 D+K +L++I+RV++PG+++T + + + + L FD+++YDLS VGR+K+N RLNLD Sbjct: 365 DQKSSLVEIFRVLKPGEMATTAASRGLLDSLLFDNNRYDLSEVGRIKINSRLNLDVDLKN 424 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 I EDI IIK+LVD+++GK +DDID+LGNRRVRSVGE+++NQ+R GL+R+ + I E Sbjct: 425 TCITVEDIKKIIKLLVDIKDGKALVDDIDHLGNRRVRSVGELVENQFRTGLVRIAKFIVE 484 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 RI SV+ID+V+P DL+NAK + S + EFF +SQLSQ + N+LS+ITH RRLSALG GG Sbjct: 485 RIGSVEIDAVVPNDLVNAKLLTSVIKEFFGTSQLSQFMDQTNALSQITHIRRLSALGPGG 544 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 + R RA +E+RDVHPTHYGRICP ET EG NIGL++SL FA++N YGFIE+PYR+V + Sbjct: 545 LNRDRAALEVRDVHPTHYGRICPIETPEGQNIGLINSLAIFAKINRYGFIESPYRRVINR 604 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 +VT++VVYLSA+EE IAQA++SL + + LV CR G ++VP +++DFID +P Sbjct: 605 RVTDEVVYLSALEEGRYKIAQADTSLCTNDCLIDGLVSCRYDGNFVMVPAQEVDFIDLTP 664 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 QVVS+AAS+IPFLENDD+NR LMG NMQRQAVPLLK++AP VGTG+ESVVA SG + Sbjct: 665 MQVVSVAASMIPFLENDDANRALMGANMQRQAVPLLKSQAPLVGTGIESVVAHDSGTVVA 724 Query: 729 AKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEV 788 A GIVEQVD+ RIV++ D GVDIY L KFQRSN NTC+NQ+ LV VGD V Sbjct: 725 ALHDGIVEQVDSTRIVVK-TSVKKDAGAPGVDIYNLKKFQRSNYNTCINQKVLVNVGDIV 783 Query: 789 RRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFE 848 ++ D+IADG +T+ G++ALGRN+LVAF+ W+GY FEDS+L+SER+V ED++TSIHIEE E Sbjct: 784 KKGDVIADGVATNKGEIALGRNVLVAFIAWNGYTFEDSILVSERIVKEDIYTSIHIEELE 843 Query: 849 VMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTP 908 ++ARDT+LGPEEITRDIPNV++E L+++DE GI+ +GA+V GDILVGK+TPK ESP+TP Sbjct: 844 LVARDTRLGPEEITRDIPNVNDESLRHLDEVGIVNIGAKVRTGDILVGKVTPKSESPVTP 903 Query: 909 EEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLA 968 EEKLLRAIFGEKA +V+D+SL VP G++GTV+DVR+F+R GIDK+ER++++E+++I L Sbjct: 904 EEKLLRAIFGEKASEVKDSSLYVPPGITGTVIDVRVFSRRGIDKDERTLAIEKQKIRKLV 963 Query: 969 RDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQD 1028 +D +DE ++ R+ E+L GQ A L ++++ Q + + Sbjct: 964 KDYEDELAVIQHFTIVRVKELLVGQVAACSLDSIIIGDKLDEAMLNKLTNEQLLKLKADN 1023 Query: 1029 EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGD 1088 + + +K YET+++ L + +KIEKIQ GDD+P G LRVVKVF+A+K +Q GD Sbjct: 1024 SSIMAEISEIKCHYETTRAQLTSQLNSKIEKIQCGDDLPQGALRVVKVFIAIKHRLQPGD 1083 Query: 1089 KMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGL 1148 KMAGRHGNKG+VS+++P EDMPFL+DGT VDIVLNPLG+P+RMNVGQI ETHLGWA V L Sbjct: 1084 KMAGRHGNKGVVSKVVPEEDMPFLEDGTVVDIVLNPLGLPARMNVGQILETHLGWAGVNL 1143 Query: 1149 GKKIKSLINDYKANGD--ISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 G+KI +++DY + +R F++K+ S + I +D ++ + ++ + G+ Sbjct: 1144 GRKIGKMVDDYYFGNNQCTDEIRKFVKKIYANNSIADTIDQVNDQQLIEICQELRQGIYF 1203 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 STPVFDGA I ML +AD+D+SGQ L DG TGE FDR TVGY Y+LKL+H+V +K Sbjct: 1204 STPVFDGAKIADIKQMLELADVDKSGQVRLIDGRTGEYFDRRCTVGYQYLLKLHHLVDEK 1263 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARS G YSLVTQQPLGGKS+ GGQR GEME W ++AYGAAY LQE+LT KSD V GR Sbjct: 1264 IHARSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALEAYGAAYTLQELLTTKSDSVEGRI 1323 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 ++Y++I+ GN+ F +G PES NV++KE+++L L+I L Sbjct: 1324 KMYQAIIRGNNNFVSGVPESLNVMIKELRSLCLNIQL 1360 >gi|212702083|ref|ZP_03310211.1| hypothetical protein DESPIG_00090 [Desulfovibrio piger ATCC 29098] gi|212674488|gb|EEB34971.1| hypothetical protein DESPIG_00090 [Desulfovibrio piger ATCC 29098] Length = 1378 Score = 1528 bits (3956), Expect = 0.0, Method: Composition-based stats. Identities = 689/1378 (50%), Positives = 925/1378 (67%), Gaps = 14/1378 (1%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDER-PNEGLQAAFKSVFPITAFSGAAM 73 K FGK + IP L+ +Q SY FL +A +R EGL+ F +VFPI F+ A Sbjct: 6 KQFGKINVTLPIPHLLNLQIDSYSKFLQEGVAEADRNKEEGLEGVFHTVFPIEDFNKTAS 65 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEFVSYE PK+D +C+ + LTY P+ I +RL+V+D DE TG ++I+DIKEQ IY G Sbjct: 66 LEFVSYEIREPKYDQAECISKGLTYEAPVHIKVRLVVYDTDEATGNRTIRDIKEQGIYFG 125 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 LPLMT+ GTF+I G +R++V+QL RSPGI F+HD G+ S K+LY+CR+IP +G W+D Sbjct: 126 TLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMRGSWLD 185 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAAD 253 +FD KDI++VRIDRRRK+P T A+GM +IL FY + Y + Sbjct: 186 FDFDHKDILYVRIDRRRKMPATILFKAMGMSKMDILEYFYTREHYLLKPHNTLMWEVEKS 245 Query: 254 LMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIV 313 L S + D G +I++GK +T + + E G+K + + D L G+++AED++ Sbjct: 246 LYRKDNAYSDIATED-GTVLIKAGKPITKRGWRQVCEAGIKAIEVRPDTLDGMFLAEDVI 304 Query: 314 NGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDA 373 +GE+ EA D I LE + + I I +L+ + ++ IR+TL+ D+ D++ A Sbjct: 305 APGSGEVLAEAADEITPGLLERMREAGIERIAVLHTKGTDTSSSIRDTLMQDRIPDQEKA 364 Query: 374 LLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRK 433 +IYR +RP T +A S F+ LF D YDLS VGR K+N RL L +D R + Sbjct: 365 QEEIYRRLRPSSPPTAEIAASFFDNLFRSPDYYDLSPVGRYKLNQRLGLPDTEDSRTLTD 424 Query: 434 EDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSV 493 DI+ IK+LV L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S Sbjct: 425 NDILTAIKVLVQLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKERMSIQ 484 Query: 494 DIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARAR 553 +I ++MP DLIN KPV + + EFF +SQLSQ + NSLS +TH RRLSALG GG+ R R Sbjct: 485 EISTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGLTRER 544 Query: 554 AGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTND 613 AG E+RDVH +HYGRICP ET EG NIGL+ SLT+FA+VN +GFIETPYR V +G++T++ Sbjct: 545 AGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTFAKVNDFGFIETPYRVVRNGRMTDE 604 Query: 614 VVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVS 673 +V+L A E ++ +AQAN+ +D DG+F +E V R GE + R+++ +D SP Q+VS Sbjct: 605 IVHLDASREGDQVVAQANARVDADGNFLDEFVTVRVKGEVEMRSRDEVTLMDISPSQMVS 664 Query: 674 IAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAG 733 I+A+LIPFLE+DD+NR LMG NMQRQAVPLL++E P VGTGME VA+ SGA IVA+ G Sbjct: 665 ISAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPLVGTGMEIDVARDSGACIVAQADG 724 Query: 734 IVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDI 793 VE DA RIV+ EGDL GV Y L+KF +SNQN+C Q+P G ++ +I Sbjct: 725 KVEYADADRIVVSY-EGDLYKKQGGVRAYDLLKFHKSNQNSCFGQKPTCYPGQVFKKGEI 783 Query: 794 IADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARD 853 +ADGP D G LALG+N++VAFMPW GYN+EDS+LISER V ED+FTSIHIEEFEV+ARD Sbjct: 784 LADGPGIDEGQLALGKNLVVAFMPWCGYNYEDSILISERTVKEDIFTSIHIEEFEVVARD 843 Query: 854 TKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLL 913 TKLGPEEITRDIPNVSE+ L+N+D+ GII +GA V P DILVGKITPKGE+ +TPEEKLL Sbjct: 844 TKLGPEEITRDIPNVSEDMLRNLDDSGIIRIGAAVKPDDILVGKITPKGETQLTPEEKLL 903 Query: 914 RAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDD 973 RAIFGEKA DV++TSL+VP GV GTV+DV++FNR +K++R++++E +L + + D Sbjct: 904 RAIFGEKARDVKNTSLKVPPGVEGTVIDVKVFNRRSGEKDDRTLAIEAHDTAVLDQKESD 963 Query: 974 EQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV-------LSSDLISEYPRSQWWQFAV 1026 L L + G+ G KK V L+ + + P + Sbjct: 964 HMRALGNRTREVLAPHVLGKLTAVSVPGNKKGEVLVEAGAALTREQLDAIPVKKLQGL-F 1022 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 + ++V V Y+ L + +K EK+ GDD+PPGV+++VKV +A+KR + Sbjct: 1023 ESKEVNDIVADQLKDYDHQVDYLHAIYDSKREKVTEGDDLPPGVIKMVKVHIAIKRKLSV 1082 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG+VS ILP EDMPF DG PVDIVLNPLGVPSRMN+GQI ETHLGW Sbjct: 1083 GDKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWGAK 1142 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG+++ L++ + + +R ++ V + + +E + DD+ + ++ ++G+ Sbjct: 1143 ELGRQLAELLD---SGAALQVVRDEVKDVFDSPAISELVDKMDDEEFIASVKKLRNGIVT 1199 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 TPVFDGA EE I + A D G++ILYDG TG PF VT G +Y+LKL+H+V +K Sbjct: 1200 KTPVFDGATEEEIWGWMEKAGKDSDGKTILYDGRTGVPFKNRVTTGVMYILKLHHLVDEK 1259 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY+LQE LT+KSDDV GR Sbjct: 1260 IHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRV 1319 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 ++YE IV G++ E G PESFNVLVKE+ +LGL + L K K + E Sbjct: 1320 KMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVTLHQEDGKKKPKRIGFVRDQEPE 1377 >gi|94987347|ref|YP_595280.1| DNA-directed RNA polymerase subunit beta [Lawsonia intracellularis PHE/MN1-00] gi|158564217|sp|Q1MPW8|RPOB_LAWIP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|94731596|emb|CAJ54959.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Lawsonia intracellularis PHE/MN1-00] Length = 1373 Score = 1528 bits (3956), Expect = 0.0, Method: Composition-based stats. Identities = 665/1372 (48%), Positives = 928/1372 (67%), Gaps = 13/1372 (0%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K FGK + IP L+ +Q SY FL + + P EGL++ F+SVFPI F+ + L Sbjct: 6 KQFGKIKVEVPIPHLLNLQVDSYKKFLQEGLL-EPLPEEGLESVFRSVFPIEDFNRTSSL 64 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 EFV+Y+ PK+D +C+ + LTY P++I +RLI++DVD T ++++ DIKEQ IY G Sbjct: 65 EFVNYKIGEPKYDQAECIAKGLTYEAPIRIKVRLIIYDVDSDTESRTVHDIKEQDIYFGT 124 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 LPLMT+ GTF+I G +R++V+QL RSPGI F+HD G+ S K+LY+CRIIP +G W+D Sbjct: 125 LPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKTHASRKVLYSCRIIPMRGSWLDF 184 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 +FD KDI++VRIDRRRK+P T L A+GM ++IL+ FY K Y D L Sbjct: 185 DFDHKDILYVRIDRRRKMPATILLKAMGMGKQDILNFFYKKETYILDNDGRIKWKFDPSL 244 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 + ++D D ++ +GK +T + + ++ G++ + + G ++AEDI++ Sbjct: 245 FRKDIAYTDILDNDN-NLLVAAGKTITKRVWRQMEASGLEAFEVDPSTVIGQFLAEDIID 303 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 TGEI E+ + I E ++ + I +L+ + ++ IR+TLV DK + A Sbjct: 304 TSTGEILAESAEEITEGLIQTFRDAGITTFTVLHTRGNDTSSSIRDTLVQDKIPTTEKAQ 363 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 +IYR +RP T +A S F+ LF ++ YDLS VGR K+N RL+ +R + Sbjct: 364 EEIYRRLRPSSPPTPEIAASFFDNLFRNNSYYDLSPVGRYKLNQRLDNYENATLRTLSDN 423 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DI+ IK+L L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S + Sbjct: 424 DILEAIKLLTHLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKERMSIQE 483 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 + ++MP DLIN KPV + + EFF +SQLSQ + NSLS +TH RRLSALG GG+ R RA Sbjct: 484 VATLMPHDLINPKPVAALLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGLTRERA 543 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVH +HYGRICP ET EG NIGL+ SLT++A+VN YGFIETPYR V +G VT+++ Sbjct: 544 GFEVRDVHVSHYGRICPIETPEGPNIGLIVSLTTYAKVNDYGFIETPYRVVRNGYVTDEI 603 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 ++L A E + IAQAN+S+D +G ++ V R G+ ++ RE++ +D SP Q+VSI Sbjct: 604 IHLDASCEFSEVIAQANASIDSEGRLIDDYVTTRARGDVLMSAREEVTLMDISPSQMVSI 663 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 +A+LIPFLE+DD+NR LMG NMQRQAVPLL++E P VGTGME VA SG+ I+A+ GI Sbjct: 664 SAALIPFLEHDDANRALMGSNMQRQAVPLLRSERPLVGTGMEVDVAHDSGSCILAEGDGI 723 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 + DA RI++ + +L P GV Y L+K+ +SNQN C QRP G V++ +++ Sbjct: 724 IRYADANRIIVSYDDPNLYPEFGGVRAYDLLKYHKSNQNFCFGQRPSCIPGQIVKKGEVL 783 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGP+ G LALG+N++VAFMPW GYNFEDS+LISER+V ED +TS+HIEEFE++ARDT Sbjct: 784 ADGPAIRDGGLALGKNLVVAFMPWCGYNFEDSILISERVVKEDTYTSVHIEEFEIVARDT 843 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEITRDIPNV EE L N+DE GII +GA V P DILVGKITPKGE+ +TPEEKLLR Sbjct: 844 KLGPEEITRDIPNVGEEMLSNLDENGIIRIGAAVKPEDILVGKITPKGETQLTPEEKLLR 903 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFG+KA DV++TSL+VP G+ GTV+DV++FNR +K++R+ +E +I L+ + + Sbjct: 904 AIFGDKARDVKNTSLKVPPGIEGTVIDVKVFNRRSGEKDDRTRLIEDYEISLMDSKEQNY 963 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV-------LSSDLISEYPRSQWWQFAVQ 1027 + + + +++ ++ G+ + G K V ++ +L+ P + A + Sbjct: 964 IKSITQRMKEKILPLINGKQLGTTILGKGKGEVLAEENSAITPELLDSLPLKKLEG-AFK 1022 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 +++ + + QYE + ++ + +K K+ GDD+PPGV+R+VKV +A+KR + G Sbjct: 1023 SKELNETITEMLSQYEKQINYIKTIYDSKRGKVTEGDDLPPGVIRMVKVHIAVKRKLAVG 1082 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VS ILP EDMPF DG+PVDIVLNPLGVPSRMN+GQI ETHLGWA Sbjct: 1083 DKMAGRHGNKGVVSCILPEEDMPFFADGSPVDIVLNPLGVPSRMNIGQIMETHLGWAAKE 1142 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG+++ +++ + I LR ++ V + + +I DDD+ ++ K G+ Sbjct: 1143 LGQQLNNMV---EQGVAIQSLREQVKSVFESPEISAEIDAMDDDTFRTSVQKLKKGIITM 1199 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA E + L A L G++ILYDG TGE F VT G +Y+LKL+H+V +K+ Sbjct: 1200 TPVFDGAGESEVWDWLAKAGLPSDGKAILYDGRTGEAFKNRVTTGVMYILKLHHLVDEKI 1259 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA+Y+LQE LT+KSDDV GR + Sbjct: 1260 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASYLLQEFLTVKSDDVSGRVK 1319 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 +YE IV G++ E G PESFNVLVKE+ +LGL++ L K K + D Sbjct: 1320 MYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQEEGKKKPKRTGLID 1371 >gi|257095047|ref|YP_003168688.1| DNA-directed RNA polymerase subunit beta [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047571|gb|ACV36759.1| DNA-directed RNA polymerase, beta subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1427 Score = 1524 bits (3945), Expect = 0.0, Method: Composition-based stats. Identities = 685/1432 (47%), Positives = 937/1432 (65%), Gaps = 75/1432 (5%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK F K ++D+P L+ Q S+ FL N+ +R N+GLQAAF S+ Sbjct: 1 MTYSYTEKKRIRKSFAKRASVLDVPFLLATQLESFTAFLQANVPVAQRRNQGLQAAFSSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A LEFVSY P FDV +C R LT+A L+ +RL++ D + +I Sbjct: 61 FPIVSHSGNARLEFVSYALSDPAFDVTECQQRGLTFASALRAKVRLVILDRETPD---TI 117 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K++KEQ +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ Sbjct: 118 KEVKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KD++ R+DRRRK+PVTS L A+G+ + IL F+ + G Sbjct: 178 RVIPYRGSWLDFEFDPKDLLFFRVDRRRKMPVTSLLKAIGLTPQRILREFFEFDTFHVGG 237 Query: 243 DFWCFPLSAA----------------------------------------------DLMV 256 F L D ++ Sbjct: 238 KIIEFALVPERLRGEVARFDFNDPSGKLIIAKDKRITAKHIRELDAAGIKQVAVPDDFLI 297 Query: 257 GAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG--ITSDCLCGLYVAEDIVN 314 G V+ +VD +TGE + + +++T GLL L E GV L +D G ++++ + Sbjct: 298 GRVVAEEIVDQNTGEILANANEEITEGLLAKLVEAGVATLQTLYINDLDRGGFISQTLRT 357 Query: 315 GET---------GEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR------ 359 ET + G+ E+++E +F+ + +V + R Sbjct: 358 DETATRQAARIAIYRMMRPGEPPTEEAVEILFNGLFYSDDRYDLSAVGRMKFNRRVGRKA 417 Query: 360 ----NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVK 415 ++ R+ + + V+ V + ++ + Sbjct: 418 VVEHKVMLKHVPSKREGLVKLVNEVVSDSVPVVDQVMAELSYGPRAVAENLTQEAAVTLF 477 Query: 416 MNMRLNLDTPD--DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKN 473 ++ T + + + DI+ +IK+LV+LRNG+G IDDID+LGNRRVRSVGE+ +N Sbjct: 478 EQLKAMGATGEVREQLTLSPRDIVEVIKLLVELRNGRGEIDDIDHLGNRRVRSVGELAEN 537 Query: 474 QYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLS 533 Q+R GL+R+ER++KER+S + D++MP DLINAKP+ +AV EFF SSQLSQ + N LS Sbjct: 538 QFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPISAAVREFFGSSQLSQFMDQTNPLS 597 Query: 534 RITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVN 593 ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL FAR N Sbjct: 598 EITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARTN 657 Query: 594 AYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEE 653 YGF+ETPYRKV DG+V++ + YLSA+EE IAQANS L E G ++LV CR GE Sbjct: 658 EYGFLETPYRKVADGRVSDQIEYLSAIEEGAYIIAQANSDLGEGGVLMDQLVTCREKGET 717 Query: 654 ILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGT 713 IL ++ ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGT Sbjct: 718 ILAEPARVQYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGT 777 Query: 714 GMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQN 773 G+E VA SG A+ AKR G V+ VDA R+V+R + + P GVDIY L+K+ RSNQN Sbjct: 778 GIERTVAVDSGTAVQAKRGGKVDYVDASRVVVRVNDDETGPGEVGVDIYNLVKYTRSNQN 837 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 T +NQRPLV+VGD + R D++ADG STD G+LALG+NMLVAFMPW+GYNFEDS+LISER+ Sbjct: 838 TNINQRPLVRVGDLIARGDVVADGASTDKGELALGQNMLVAFMPWNGYNFEDSILISERV 897 Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDI 893 V++D FTSIHIEE V+ARDTKLGPEEITRDI ++ E L +DE GI+ +GAEV GD+ Sbjct: 898 VAQDRFTSIHIEELTVVARDTKLGPEEITRDIASLGESQLSRLDESGIVYIGAEVEAGDV 957 Query: 894 LVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKN 953 LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRV SG++GTV+DV++F R GI+++ Sbjct: 958 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVQSGIAGTVIDVQVFTREGIERD 1017 Query: 954 ERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLI 1013 +R+ S+ + + D D+ I++R+ ++R+ ++ G+ A GPK K T++ + + Sbjct: 1018 KRAQSIIDDHLRSYKLDLADQLRIVERDAFARVERLIVGKPANGGPKRLAKGTLVVQEYL 1077 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRV 1073 W+ + DE+V +ESL+ E ++ + F+ K +K+ GD++PPGV ++ Sbjct: 1078 DGIEPHHWFDIRMADEEVAHQLESLREGLEQTRKGFDIAFEEKRKKLTQGDELPPGVQKM 1137 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA+KR +Q+GDKMAGRHGNKG+VSRI+P EDMP++ DG PVDIVLNPLGVPSRMNV Sbjct: 1138 VKVYVAVKRRLQAGDKMAGRHGNKGVVSRIVPVEDMPYMADGRPVDIVLNPLGVPSRMNV 1197 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQI E HLG A GLG KI ++ + + +R FLE++ +E + +D + Sbjct: 1198 GQILEVHLGLAAKGLGIKIGEML---SRQANANEVRGFLEQIYNGTGKSEDLDQLNDVEI 1254 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 +A ++GVP +TPVFDGA E I SML +A + ESGQ LYDG TGE F+R VTVGY Sbjct: 1255 NEMAGNLEAGVPFATPVFDGAKESEIKSMLALAGMPESGQMTLYDGRTGEQFERQVTVGY 1314 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +++LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQE Sbjct: 1315 MHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQE 1374 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 MLT+KSDDV GRT+VYE+IV G+ + G PESFNVLVKE+++L + IDLE Sbjct: 1375 MLTVKSDDVNGRTKVYENIVKGDHKIDAGMPESFNVLVKEIRSLAIDIDLER 1426 >gi|148284106|ref|YP_001248196.1| DNA-directed RNA polymerase subunit beta [Orientia tsutsugamushi str. Boryong] gi|158514258|sp|A5CC93|RPOB_ORITB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|146739545|emb|CAM79274.1| DNA-directed RNA polymerase beta chain [Orientia tsutsugamushi str. Boryong] Length = 1377 Score = 1519 bits (3933), Expect = 0.0, Method: Composition-based stats. Identities = 719/1360 (52%), Positives = 987/1360 (72%), Gaps = 9/1360 (0%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAF 68 R+RK FGK + IP+LIEVQK SY+ FL + + D R N+GLQ S+FPI Sbjct: 7 KKRIRKNFGKINLVSSIPNLIEVQKNSYNKEFLQLGVPVDCRENKGLQGVLNSIFPIHDL 66 Query: 69 SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 G+A+LEFV Y+FD PK+DV++C+ R L+Y LKITL LIV D + + K IK IKEQ Sbjct: 67 DGSAILEFVRYDFDEPKYDVEECIQRGLSYTAALKITLSLIVLDDSDKSDPKEIKGIKEQ 126 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++Y GD+PLMT +GTFVI G +R+VVSQ+HRSPG+ FDHD G+ +GKL+Y+ R+IP + Sbjct: 127 AVYFGDIPLMTANGTFVINGTERVVVSQMHRSPGVFFDHDDGKTHSTGKLIYSARVIPYR 186 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD---FW 245 G W+D EFD+KD+++ RIDR+RK+ VT+ LMALGM S +IL+ +Y Y + W Sbjct: 187 GSWLDFEFDAKDLLYFRIDRKRKLYVTTLLMALGMSSHDILNFYYESATYKKYKKSENGW 246 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCG 305 L+ ++ L+D TG+ ++ +G+K+T + K L +KGVK + + +D L G Sbjct: 247 IVDFLPE-LVSTKHLAYDLIDAQTGKVLLNAGQKITFRIAKMLADKGVKQILVKNDSLVG 305 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 +AED+VN +TGE+ + G+ I L + +I + +L V Y+RNTL D Sbjct: 306 KLLAEDLVNNQTGEVLLGVGEEITNDILTIVNDLQITTVKVLAV-GGQCGPYVRNTLFLD 364 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 KNKD+K +L++I+RV++PG+++T + + + + L FD+++YDLS VGR+K+N RLNLD Sbjct: 365 KNKDQKSSLVEIFRVLKPGEMATTAASRGLLDSLLFDNNRYDLSEVGRIKINSRLNLDID 424 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 I EDI IIK+LVD+++GK +DDID+LGNRRVRSVGE+++NQ+R GL+R+ + Sbjct: 425 LKNTCITVEDIKKIIKLLVDIKDGKALVDDIDHLGNRRVRSVGELVENQFRTGLVRIAKF 484 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 I ERI SV+ID+V+P DL+NAK + S + EFF +SQLSQ + N+LS+ITH RRLSALG Sbjct: 485 IVERIGSVEIDAVVPNDLVNAKLLTSVIKEFFGTSQLSQFMDQTNALSQITHIRRLSALG 544 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RA +E+RDVHPTHYGRICP ET EG NIGL++SL FA++N YGFIE+PYR+V Sbjct: 545 PGGLNRDRAALEVRDVHPTHYGRICPIETPEGQNIGLINSLAIFAKINRYGFIESPYRRV 604 Query: 606 CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 + +VT++VVYLSA+EE IAQA++SL + + LV CR G ++V +++DFID Sbjct: 605 INRRVTDEVVYLSALEEGRYKIAQADTSLCTNDCLIDGLVSCRYDGNFVMVLAQEVDFID 664 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 +P QVVS+AAS+IPFLENDD+NR LMG NMQRQAVPLLK++AP VGTG+ESVVA SG Sbjct: 665 LTPMQVVSVAASMIPFLENDDANRALMGANMQRQAVPLLKSQAPLVGTGIESVVAHDSGT 724 Query: 726 AIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 + A GIVEQVD+ RIV++ D GVDIY L KFQRSN NTC+NQ+ LV VG Sbjct: 725 VVAALHDGIVEQVDSTRIVVK-TSVKKDAGAPGVDIYNLKKFQRSNYNTCINQKVLVNVG 783 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 D V++ D+IADG +T+ G++ALGRN+LVAF+ W+GY FEDS+L+SER+V ED++TSIHIE Sbjct: 784 DIVKKGDVIADGVATNKGEIALGRNVLVAFIAWNGYTFEDSILVSERIVKEDIYTSIHIE 843 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E E++ARDT+LGPEEITRDIPNV++E L+++DE GI+ +GA+V GDILVGK+TPK ESP Sbjct: 844 ELELVARDTRLGPEEITRDIPNVNDESLRHLDEVGIVNIGAKVRTGDILVGKVTPKSESP 903 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +TPEEKLLRAIFGEKA +V+D+SL VP G++GTV+DVR+F+R GIDK+ER++++E+++I Sbjct: 904 VTPEEKLLRAIFGEKASEVKDSSLYVPPGITGTVIDVRVFSRRGIDKDERTLAIEKQKIR 963 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFA 1025 L +D +DE ++ R+ E+L GQ A L ++++ Q + Sbjct: 964 KLVKDYEDELAVIQHFTIVRVKELLVGQVAACSLDSIIIGDKLDEAMLNKLTNEQLLKLK 1023 Query: 1026 VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 + + + +K YET+++ L + +KIEKIQ GDD+P G LRVVKVF+A+K +Q Sbjct: 1024 ADNSSIMDEISEIKCHYETTRAQLTSQLNSKIEKIQCGDDLPQGALRVVKVFIAIKHRLQ 1083 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG+VS+++P EDMPFL+DGT VDIVLNPLG+P+RMNVGQI ETHLGWA Sbjct: 1084 PGDKMAGRHGNKGVVSKVVPEEDMPFLEDGTVVDIVLNPLGLPARMNVGQILETHLGWAG 1143 Query: 1146 VGLGKKIKSLINDYKANGD--ISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSG 1203 V LG+KI +++DY + + +R F++K+ S + I +D ++ + ++ + G Sbjct: 1144 VNLGRKIGKMVDDYYSGNNQCTDEIRKFVKKIYANNSIADTIDQVNDQQLIEICQELRQG 1203 Query: 1204 VPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMV 1263 + STPVFDGA I ML +AD+D+SGQ L DG TGE FDR TVGY Y+LKL+H+V Sbjct: 1204 IYFSTPVFDGAKIADIKQMLELADVDKSGQVRLIDGRTGEYFDRRCTVGYQYLLKLHHLV 1263 Query: 1264 SDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVV 1323 +K++ARS G YSLVTQQPLGGKS+ GGQR GEME W ++AYGAAY LQE+LT KSD V Sbjct: 1264 DEKIHARSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALEAYGAAYTLQELLTTKSDSVE 1323 Query: 1324 GRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 GR ++Y++I+ GN+ F +G PES NV++KE+++L L+I L Sbjct: 1324 GRIKMYQAIIRGNNNFVSGVPESLNVMIKELRSLCLNIQL 1363 >gi|256830545|ref|YP_003159273.1| DNA-directed RNA polymerase, beta subunit [Desulfomicrobium baculatum DSM 4028] gi|256579721|gb|ACU90857.1| DNA-directed RNA polymerase, beta subunit [Desulfomicrobium baculatum DSM 4028] Length = 1363 Score = 1517 bits (3928), Expect = 0.0, Method: Composition-based stats. Identities = 672/1362 (49%), Positives = 934/1362 (68%), Gaps = 16/1362 (1%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K FG+ + IDIP L+ +Q SY+ FL ++ P R + GL+ F+SVFPI F+ A L Sbjct: 6 KKFGRIKDSIDIPHLLSLQLDSYNKFLQTDVPPSMRTDIGLEGVFRSVFPIHDFNKTATL 65 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 E+VSY+ PK+DVD+C+ + LT+ PL+I +RL V+DVDE +G+++I DIKEQ IY G Sbjct: 66 EYVSYDIGKPKYDVDECIAKGLTFEAPLRIKVRLAVYDVDEASGSRTIHDIKEQDIYFGT 125 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 +PL+T+ GTF+I G +R++V+QL RSPGI F+HD G+ S K+LY+CRIIP +G W+D Sbjct: 126 IPLITQKGTFLINGTERVIVNQLQRSPGIIFEHDSGKTHSSRKILYSCRIIPMRGSWLDF 185 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 +FD KDI++VRIDRRRK+P T L A+GM SE+IL +Y K + G + + Sbjct: 186 DFDHKDILYVRIDRRRKMPATILLKAMGMTSEDILDYYYAKETFRLEGTSVLRRVEEYNF 245 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 ++ S V G ++ +GK LT G+ K + + G+++ + D L Y A+DIV+ Sbjct: 246 RKE--LAHSDVVAPDGTVIVAAGKALTKGMWKRMIKAGIEYYEVRPDTLETEYAAKDIVD 303 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 TGE+ + AGD ++E+ + I ++ ++ +A +R+TL DK +D + A Sbjct: 304 PGTGEVILRAGDPFTAGAVEKCLAAGITEMGAIFSTGAEASACLRDTLAMDKCEDLESAQ 363 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 +DIY+ +RP T ++ S F+ LF ++D YDLS VGR K+N RLNL P D R + + Sbjct: 364 IDIYKRLRPSSPPTAEISASFFDNLFRNADYYDLSPVGRYKLNSRLNLSLPIDHRTLSND 423 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DI +K L+ L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER+IKER+S + Sbjct: 424 DIFRSVKKLIQLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSLQE 483 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 + ++MP DL+N KPV + + EFF +SQLSQ + N LS +TH RRLSALG GG+ R RA Sbjct: 484 VATLMPHDLVNPKPVTAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERA 543 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVH +HYGRICP ET EG NIGL+ SLT+ VN YGFIETPYR V D VT+++ Sbjct: 544 GFEVRDVHLSHYGRICPIETPEGPNIGLIVSLTTHGLVNDYGFIETPYRVVKDAIVTDEI 603 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 Y+ A E IAQAN+ +D F V R GE +VPRE++ +D SP Q+VSI Sbjct: 604 QYMEASTESGHIIAQANALFGDDRQFINAQVEARVEGEFAIVPREEVTLMDISPGQIVSI 663 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 +++LIPFLE+DD+NR LMG NMQRQ+VPLL E P +GTG+E VA+ SG+ ++A+ G Sbjct: 664 SSALIPFLEHDDANRALMGSNMQRQSVPLLVTEEPLIGTGIEGKVAQDSGSCLLAEGDGE 723 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 + VDA R+++ + L P GV Y + K+ +SNQN+C Q+P VK+GD+V++ ++ Sbjct: 724 IMYVDADRVIVAYSDD-LYPEAGGVRFYEVQKYHKSNQNSCFGQKPRVKIGDKVKKGAVL 782 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGP+ G+LALG+N+LVAFMPW GYN+EDS+LISER+V EDV+TSIHIEEF+V ARDT Sbjct: 783 ADGPAIHNGELALGKNLLVAFMPWCGYNYEDSILISERVVKEDVYTSIHIEEFDVFARDT 842 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEE+TRDIPNV EE L+N+DE GII +GA V P DILVGKITPKGE+ +TPEE+LLR Sbjct: 843 KLGPEEVTRDIPNVGEEMLRNLDESGIIRIGARVKPDDILVGKITPKGETQLTPEERLLR 902 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFG+KA DV++TSL+VP G+ GTV+DV++FNR DK+ER+ +E ++E + + Sbjct: 903 AIFGDKARDVKNTSLKVPPGIEGTVIDVKVFNRRSGDKDERTHLIENYELERIDVRERQH 962 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV-------LSSDLISEYPRSQWWQFAVQ 1027 L ++ ++ G++ G +K V + D+ +E P + A Sbjct: 963 AAALTETTRRKIWDVCKGKSVAKTIMGKRKGEVLLEANQPIKEDVFAEIPLKKLVG-AFA 1021 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 + V V+ ++ ++D +++K K+ GDD+PPGV+++ KV+VA+KR + G Sbjct: 1022 AKDVNEAVKVQLDYFDLQLKFVKDVYESKRGKVTEGDDLPPGVIKMAKVYVAVKRKLNVG 1081 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VS ILP EDMPF DGT +D+VLNPLGVPSRMN+GQI ETHLGWA Sbjct: 1082 DKMAGRHGNKGVVSNILPEEDMPFFADGTSMDVVLNPLGVPSRMNIGQIMETHLGWAAKS 1141 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG++I +++++ ++ +RS ++ + + + + DD V+ A G+ + Sbjct: 1142 LGQQIAAMVDEG-----VAKVRSEIKDIFDSPETSALLDTMTDDEVIEAARDLNRGIIMK 1196 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGADE I ++L+ A L E G+++L+DG TG PF VTVGY+Y LKL+H+V +K+ Sbjct: 1197 TPVFDGADESEIWALLKRAGLPEDGKALLFDGRTGVPFHNRVTVGYMYYLKLHHLVDEKI 1256 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY+LQE LT+KSDDV GR + Sbjct: 1257 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVNGRVK 1316 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 +YE IV G++ E+G PESFNVLVKEM ALGL + L K Sbjct: 1317 MYEKIVKGSNFLESGMPESFNVLVKEMMALGLEVTLLEDDKK 1358 >gi|224370697|ref|YP_002604861.1| RpoB [Desulfobacterium autotrophicum HRM2] gi|259494179|sp|C0Q9X9|RPOB_DESAH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|223693414|gb|ACN16697.1| RpoB [Desulfobacterium autotrophicum HRM2] Length = 1401 Score = 1517 bits (3928), Expect = 0.0, Method: Composition-based stats. Identities = 721/1405 (51%), Positives = 957/1405 (68%), Gaps = 41/1405 (2%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M ++ + R+RK FG ++DIPDLI +Q+ S++ FL N+ P+ER + G+ FK Sbjct: 1 MTGSLLAS--KRIRKEFGSKSRVVDIPDLIGMQRTSFERFLQRNVPPEEREDIGIHLVFK 58 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SV PI F+G + LE+VSY F K + +C+ R +TY +P+ IT+RL+V+DVD+ G Sbjct: 59 SVLPIKDFTGTSSLEYVSYSFGETKHSMKECISRGMTYEIPVNITVRLVVYDVDKDAGVT 118 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SI+DIKEQ IY G +PLMTK GTF+I G +R VVSQLHRS G+ FDHDKG++ SGK++Y Sbjct: 119 SIRDIKEQEIYFGTIPLMTKRGTFIINGTERAVVSQLHRSSGVFFDHDKGKSHSSGKIIY 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 RIIP +G W+D+E D KDI+++RIDRRRK PVT A G +E+ILS FY K + Sbjct: 179 TARIIPVRGSWIDMEIDPKDIVNIRIDRRRKFPVTILFKAFGYTNEDILSFFYKKEQIVK 238 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + +L + S ++D +TGE V++ G+ T LK L+ G+K + I+ Sbjct: 239 KDGILFKEFNPDNLKRN-RASFDILDPETGEAVVKKGRLFTLRALKQLQVAGLKSIPISE 297 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + + G A +V+ ET EI +AG +ID + LE+I + I + ILYVD+ ++++ +R Sbjct: 298 EDIIGRGFATSVVHPETEEILAKAGSLIDPEVLEKIADAGITEFSILYVDTYSSDS-MRK 356 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DK R +AL++IYR +RPG+ +T VA+ + LFF YDLS VGR+KMN RL Sbjct: 357 TLAVDKVTSRAEALIEIYRRLRPGNPATPEVAQDFIDHLFFKPAYYDLSNVGRLKMNHRL 416 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 + T DVR +R+EDI+ LV+L++ +G +DDID+LGNRRVR+VGE+L+NQYR+GL+ Sbjct: 417 GMSTGIDVRTLRREDILLTAATLVELKDTQGAVDDIDHLGNRRVRAVGELLENQYRIGLV 476 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER+IKER+S ++D++MP DL+N KPV + V EFF +SQLSQ + N LS TH RR Sbjct: 477 RMERAIKERMSMQEVDAMMPHDLVNPKPVSAVVREFFGTSQLSQFMDQTNPLSETTHKRR 536 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHP+HYGRICP ET EG NIGL+ SL ++ARVN +GFIET Sbjct: 537 LSALGPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLCTYARVNDFGFIET 596 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR DG V+ + +LSA EE+ IAQAN+ LD+ G +LV R GE +V + Sbjct: 597 PYRIAKDGVVSKQITHLSAFEEKEHPIAQANAVLDDQGHLMNDLVTSRVGGEFEMVAKND 656 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 I+F+D SP Q+VS++ASLIPFLENDD+NR LMG NMQRQAVPL+++EAP VGTG+E VVA Sbjct: 657 IEFMDVSPNQLVSVSASLIPFLENDDANRALMGSNMQRQAVPLIRSEAPLVGTGIEGVVA 716 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SG AIVA+ GIV VDA RIV+++ E V IY KF RSNQNTC N RP Sbjct: 717 RDSGVAIVAEHDGIVVDVDAKRIVVKNTENGKGSDDRTVTIYTASKFVRSNQNTCFNHRP 776 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK GD VR+ ++IADGPST++G+LALG+N+ VAFMPW GYN+EDS+L+SER+V E V+T Sbjct: 777 IVKKGDAVRKGEVIADGPSTEMGELALGKNVTVAFMPWGGYNYEDSILVSERLVKEGVYT 836 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 S+H+EEFEV+ARDTKLG EEITRDIPN EE LK++D+ GII +GAEV PGDILVGKITP Sbjct: 837 SVHVEEFEVVARDTKLGKEEITRDIPNAGEEALKDLDDSGIIRLGAEVKPGDILVGKITP 896 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGE+ ++PEEKLLRAIFGEKA DV+DTSLRVP GV G V ++F+R G+ K++R+ +E Sbjct: 897 KGETQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGVVTAAKVFSRRGLPKDDRTRLIE 956 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISE 1015 +IE L +D+DDE I+ I RL +IL GQ + T+++ L Sbjct: 957 DLEIEKLEKDRDDEVRIITETIQERLEDILAGQALQAVVKKGKKVVVPAGTLVTRGLFEG 1016 Query: 1016 YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075 + V+D + + + ET + F N+ + + GDD+PPGVL+++K Sbjct: 1017 ISLTDLMGLTVEDSSLTEMAHVILEKAETQIKKARENFNNQASRYEKGDDLPPGVLKLIK 1076 Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135 + VAMKR + GDKMAGRHGNKG+VSRILP D+P+ +DG VD+VLNPLGVPSRMNVGQ Sbjct: 1077 INVAMKRVLSVGDKMAGRHGNKGVVSRILPVADLPYFEDGRTVDMVLNPLGVPSRMNVGQ 1136 Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL----------------------- 1172 I E HLG A GLG++I LI + K + + ++ Sbjct: 1137 ILEIHLGCAARGLGRQIDDLIYEKKTDELRARIKRIFTTPLIKTGERANKDKTHYDFSSH 1196 Query: 1173 ---------EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSML 1223 + I DD L A +K+GV ++TPVFDGA E I S++ Sbjct: 1197 YTVEKSMAKRTNEEEIQFVDTIDHMDDTEFLEFASMYKNGVHMATPVFDGAAESEIKSLI 1256 Query: 1224 RMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPL 1283 A LD SGQS LYDG TGEPFD+P+TVG +YMLKL+H+V DK++ARS G YSLVTQQPL Sbjct: 1257 SYAGLDPSGQSTLYDGRTGEPFDKPITVGIMYMLKLHHLVDDKIHARSIGPYSLVTQQPL 1316 Query: 1284 GGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGT 1343 GGK+ GGQRLGEMEVW ++AYGAA+ LQE +T+KSDD+ GRTR+YE IV G + E G Sbjct: 1317 GGKAQFGGQRLGEMEVWAMEAYGAAHALQEFITVKSDDMTGRTRMYEKIVKGQNVLEPGM 1376 Query: 1344 PESFNVLVKEMQALGLSIDLENSRT 1368 PESF VL KE+Q+LGL I+L + Sbjct: 1377 PESFRVLTKELQSLGLDINLLEGKK 1401 >gi|258591309|emb|CBE67608.1| RNA polymerase, beta subunit [NC10 bacterium 'Dutch sediment'] Length = 1338 Score = 1503 bits (3892), Expect = 0.0, Method: Composition-based stats. Identities = 653/1382 (47%), Positives = 918/1382 (66%), Gaps = 82/1382 (5%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F K E+I IP+LIE+Q+ S+D FL M + P R GLQ AF S+FPI + +A Sbjct: 11 ERWNFSKIKEVISIPNLIEIQRRSFDQFLQMKVPPHAREEIGLQGAFASIFPIYNYDQSA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 L+FV YEF PK+ ++ L + +TY+VPLK+TLRL+V+D + A SI+DIKEQ +Y+ Sbjct: 71 SLDFVKYEFGAPKYRAEESLEKGMTYSVPLKVTLRLMVWDKPVGSEAGSIRDIKEQEVYL 130 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++PLMT GTF+I G +R+VVSQLHRSPG+ FDHD G+ SGK+LY+ R+IP +G W+ Sbjct: 131 GEMPLMTPQGTFIINGTERVVVSQLHRSPGVFFDHDSGKTHPSGKILYSARLIPYRGSWL 190 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGM-DSEEILSTFYPKIVYSQRGDFWCFPLSA 251 + EFD+ D+++VR+DRRR+ + L A+G +EEIL+ FY + + Sbjct: 191 EFEFDANDVLYVRVDRRRRFLASILLRAIGYGSNEEILNLFYERDMLRIEKGKEILIHVG 250 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 + + S + D T + ++ + K++T K L+ + + + + L G A D Sbjct: 251 SRGATSFRASKDIPDPQTKQLILGTAKRITKTAQKRLQALKITEISLYKEDLIGRIAAAD 310 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 IVN +GE+ +E I ++LE + S +L IR +++ D + K Sbjct: 311 IVNTASGEVILECAQEITAEALERMLSSGTASFAVLASLDGRETFEIRESIIRDSTRSEK 370 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 DAL ++YR MRPGD ++ +FF+ +YDLS VGR+K+N +L LD P +V + Sbjct: 371 DALTEMYRRMRPGDPPNEEATKAFLESIFFNPKRYDLSKVGRLKINRKLGLDVPLEVHAL 430 Query: 432 RK---------------EDIIAIIKILVDLRNGKG--TIDDIDNLGNRRVRSVGEMLKNQ 474 +D++ I+ L+ L++G+ ++DDID+LGNRRVRS GE+L+ Q Sbjct: 431 MCRRYRPSGMETRIGQIDDVVEAIRYLLRLKHGEAGTSVDDIDHLGNRRVRSAGELLEEQ 490 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL RMER+++ER+S+ +++++MP DL+NAKPV +A+ EFF SSQLSQ + N L+ Sbjct: 491 FRIGLARMERAVRERMSTQELETLMPHDLVNAKPVTAALKEFFGSSQLSQFMDQTNPLAE 550 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG GG++R RAG E+RDVHPTHYGR+CP ET EG N+GL++SL+++ARVN Sbjct: 551 LTHKRRLSALGPGGLSRERAGFEVRDVHPTHYGRMCPIETPEGPNVGLIASLSTYARVND 610 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 +GFIETPYRKV DG VT+++ YL+A EEE IAQAN+ LD G FT + + R G + Sbjct: 611 FGFIETPYRKVRDGVVTDEIEYLTADEEEKYTIAQANAELDGRGRFTSDRISARTGGNFV 670 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 VP ++++D +PKQ+V ++ SL+PFLE+DD+NR LMG NMQRQAVPLL+ EAP VGTG Sbjct: 671 TVPPMNVEYMDVAPKQLVGVSTSLVPFLEHDDANRALMGANMQRQAVPLLRPEAPVVGTG 730 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPS--TSGVDIYRLMKFQRSNQ 772 ME A+ SG + A+R GIVE V A RI++R+ +G + +GVDIY L+KF+RSNQ Sbjct: 731 MEYPAARDSGTVVTARRGGIVESVTADRIIVRASDGKGEEGEDDTGVDIYSLVKFRRSNQ 790 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 NTC+ Q+P+V G+ + R +IADGP+T G+LALG+N++VAFMPW GYNFED++LISER Sbjct: 791 NTCLTQKPIVSKGERITRGQVIADGPATQNGELALGQNVMVAFMPWGGYNFEDAILISER 850 Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V +D +TSIHIEEFE+ AR+TKLG EEITRD PNV E+ LK++DE GI+ +GAEV PGD Sbjct: 851 LVKDDRYTSIHIEEFEIEARETKLGKEEITRDTPNVGEDALKDLDESGIVRIGAEVKPGD 910 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDK 952 ILVGK+TPKGE+ +TPEE+LLRAIFGEKA DVRD SL VP G+ GTVVDV++F+R G++K Sbjct: 911 ILVGKVTPKGETVLTPEERLLRAIFGEKAEDVRDASLYVPPGICGTVVDVKVFSRKGVEK 970 Query: 953 NERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK-------GFKKS 1005 +ER+ S+E E++ L +D +DE I+ + +L +L G + + K Sbjct: 971 DERAKSIEDEEVSRLRKDFEDEISIIAADRDRKLRSLLDGIDVSREIRSRITRKIVVSKG 1030 Query: 1006 TVLSSDLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD 1064 L+ +++ + Q A + DE++ + + + +L+ + +I + GD Sbjct: 1031 KTLTGEMLDKLSHEQLVDLAGRLDEELGQKASRIGDAADNQVHVLQTLLEERISRATRGD 1090 Query: 1065 DMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNP 1124 ++ PGV ++VKV+VAMKR + GDKMAGRHGNKG+++++LP EDMP+L DGTPV++VLNP Sbjct: 1091 ELAPGVFKMVKVYVAMKRKLSVGDKMAGRHGNKGVIAKVLPEEDMPYLPDGTPVEVVLNP 1150 Query: 1125 LGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEK 1184 LGVPSRMNVGQI ETHLGWA LG ++ S + D +I + Sbjct: 1151 LGVPSRMNVGQILETHLGWAAGALGLRVASPVFDGAKEQEIKVWLKRAKL---------- 1200 Query: 1185 ISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 PV SG+++LYDG TG+P Sbjct: 1201 ------------------------PV--------------------SGKTVLYDGRTGKP 1216 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 F + VTVGYIY++KL H+V DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A Sbjct: 1217 FHQEVTVGYIYLMKLAHLVDDKIHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEA 1276 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ LQE+LT+KSDDVVGRT++YESIV G+ T + G PESFNVLVKE+Q+L L ++L+ Sbjct: 1277 YGAAHTLQEILTVKSDDVVGRTKMYESIVRGDCTLDPGLPESFNVLVKELQSLALDVELK 1336 Query: 1365 NS 1366 Sbjct: 1337 KE 1338 >gi|51244969|ref|YP_064853.1| DNA-directed RNA polymerase, beta-subunit [Desulfotalea psychrophila LSv54] gi|81642549|sp|Q6AP78|RPOB_DESPS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|50876006|emb|CAG35846.1| probable DNA-directed RNA polymerase, beta-subunit [Desulfotalea psychrophila LSv54] Length = 1360 Score = 1499 bits (3880), Expect = 0.0, Method: Composition-based stats. Identities = 682/1363 (50%), Positives = 937/1363 (68%), Gaps = 13/1363 (0%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 RVRK F +++ P LI +Q+ SY+ FL ++ AP+ER + GLQA K++FPI F+G Sbjct: 3 RVRKNFATADNVLEPPHLISMQRISYEEFLQIDRAPEEREDVGLQAILKNIFPINDFNGL 62 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 LEF+ Y+F PK+ V +C R ++Y +PLKI +RLI FDVDE TG ++I+D+KEQ ++ Sbjct: 63 CSLEFLKYKFGEPKYTVQECQQRGMSYEIPLKIVVRLITFDVDEETGVQTIRDMKEQEVF 122 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G LPLMT DG FV+ G +R++VSQL RSPG+ + HD G++ SGKLLY+ RIIP +G W Sbjct: 123 LGSLPLMTADGVFVVNGTERVIVSQLQRSPGLFYSHDNGKSHSSGKLLYSARIIPVRGSW 182 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 +D+EFD KD++HVRIDRRRK PVT+ L ALG SEE+L FYP + A Sbjct: 183 IDLEFDIKDVLHVRIDRRRKFPVTTLLKALGYSSEELLREFYPLENVKLSDGKYWVRFVA 242 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G ++ LV+ GE + + G+K++ L + E G++F+ +S+ + G +A Sbjct: 243 EHTA-GQRLEFDLVNPQDGEILAKKGRKISKALCRKAVEAGIEFIEASSETILGKVLASA 301 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 I E I E LE + + I + L++D VN +A +TL DK Sbjct: 302 ITLAGAEEPLYPCNTEITETVLENLAENGINEFETLFMDGVNYSASFSHTLRLDKVITTA 361 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +ALL+IYR +RP T +A + F LFF+ D YDLS VGR K+N +L L T + R + Sbjct: 362 EALLEIYRRLRPSSPPTLEIATTFFENLFFNPDLYDLSEVGRYKINAKLGLKTDIEHRAL 421 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 ++DII ++ LV L++ +G IDDID+LGNRRVR+VGE+++NQYR+GL+RMER+IKER++ Sbjct: 422 TRDDIIYGVRYLVRLKDNQGGIDDIDHLGNRRVRTVGELVENQYRMGLVRMERAIKERMT 481 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D++++MP DLIN KP+ +A+ EFF +SQLSQ + N+LS +TH RRLSALG GG++R Sbjct: 482 LQDVETLMPHDLINPKPISAAIKEFFGTSQLSQFMDQTNALSEVTHKRRLSALGPGGLSR 541 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT 611 RAG E+RDVHPTHYGRICP ET EG NIGL+ SL ++ARVN YGFIETPYRKV + + Sbjct: 542 ERAGFEVRDVHPTHYGRICPIETPEGPNIGLIVSLATYARVNPYGFIETPYRKVENRVIL 601 Query: 612 NDVVYLSAMEEENRYIAQANSSLDEDGSFTEE-LVFCRCAGEEILVPREKIDFIDASPKQ 670 +D+ YLSA+EE+ + IA A +L+ D E + R G+ I + + + ++D +P Q Sbjct: 602 DDIRYLSALEEQKQIIAPALVALEADHQSISEGNLIAREEGDVITIGSDNVTYMDVAPNQ 661 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 ++S+AASL+PFLENDD+NR LMG NMQRQAVPLL AP VGTGME VA+ SGA +++ Sbjct: 662 MISVAASLVPFLENDDANRALMGSNMQRQAVPLLVTAAPLVGTGMERYVARDSGACLLSA 721 Query: 731 RAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRR 790 G+VE+VD+ R+V+R + +D +GV +YRL K+++SNQNTC Q P + G +V + Sbjct: 722 GDGVVEEVDSNRVVVRYDKPGVDGYDTGVAVYRLTKYKKSNQNTCFTQTPTILPGLKVEK 781 Query: 791 NDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVM 850 ++ADGP + G+LALG+N+ VAFMPW G+N+EDS+LI+ER++ ED +TSIHI+ FE M Sbjct: 782 GTLLADGPGCEAGELALGKNLTVAFMPWRGFNYEDSILINERLLKEDAYTSIHIDVFETM 841 Query: 851 ARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEE 910 ARDTKLG EEITRDIPNVSE+ L+N+D+ GI+ VGAE+ PGD LVGK+TPKGE+ ++PEE Sbjct: 842 ARDTKLGKEEITRDIPNVSEDTLRNLDDSGIVRVGAEIKPGDTLVGKVTPKGETVLSPEE 901 Query: 911 KLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARD 970 KLLRAIFGEKA DV+D+SLRVP GV+G V+D ++F+R G+DK+ERS+ +E +IE L D Sbjct: 902 KLLRAIFGEKAQDVKDSSLRVPPGVTGVVIDAKVFSRKGVDKDERSLMIEDLEIERLEGD 961 Query: 971 KDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL-SSDLISEYPRSQWWQFAVQD- 1028 K DE L + L E++ G A+ K ++ S D I ++D Sbjct: 962 KRDELRSLKNGVCRELGELIAGNTALGDILDSKGELLISSGDKIEVVHAIAIGFHRLKDI 1021 Query: 1029 -----EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 +++ +Y+ ++ R+ IE+ + GDD+PPGV+++VKV+VA KR Sbjct: 1022 DFSGMADCTDRMDAAYERYQKQAEVIAQRYDGIIERQKKGDDLPPGVVKMVKVYVATKRK 1081 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 + GDKMAGRHGNKG+VSRILP EDMP+ +G VDIVLNPLGVPSRMNVGQI E HLG+ Sbjct: 1082 LSVGDKMAGRHGNKGVVSRILPEEDMPYFANGDTVDIVLNPLGVPSRMNVGQILEVHLGF 1141 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSG 1203 A LG +++ L Y + +++ L +V + I D V+ A + + G Sbjct: 1142 AAKNLGAQLEKLAEQYA----VEEIKAKLSRVYSDSEYHAIIDGKTDAEVIDWAYRHRKG 1197 Query: 1204 VPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMV 1263 + ++TPVFDGA+E I +L + +D+ GQS LYDGLTGEPF VTVG +YMLKL+H+V Sbjct: 1198 LHMATPVFDGAEEAEIRKLLIESGVDKGGQSQLYDGLTGEPFANLVTVGVMYMLKLHHLV 1257 Query: 1264 SDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVV 1323 +K++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY L+E LT+KSDDV Sbjct: 1258 DNKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYTLKEFLTVKSDDVE 1317 Query: 1324 GRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT +YE IV GN+ TG PESF+VLVKE+Q L L+++L Sbjct: 1318 GRTTMYERIVKGNNFLTTGLPESFHVLVKELQGLCLNMELIEE 1360 >gi|118498136|ref|YP_899186.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. novicida U112] gi|158512428|sp|A0Q867|RPOB_FRATN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|118424042|gb|ABK90432.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Francisella novicida U112] Length = 1358 Score = 1498 bits (3879), Expect = 0.0, Method: Composition-based stats. Identities = 675/1370 (49%), Positives = 934/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL + A R + GL+ K Sbjct: 1 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTAD-AAKGRLHSGLEIVLKQS 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ D K + Sbjct: 60 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG+ F D ++ Sbjct: 120 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGA-----FSA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG E+IL F + Sbjct: 175 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSETKTITFNS 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L M G + +VD +++ KKLTS +K +K+ GV + I D Sbjct: 235 KGFALRLDNLSNMKGELLKFDIVDAQD-NVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDL 293 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DIVN TGE+ A D + E LE + ++ ++ + YI +TL Sbjct: 294 VSTLRVAKDIVNEATGEVIAYANDDVTESLLESCVEVGMLELEVIDFITTERGRYISDTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 354 KYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 413 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 414 DKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 473 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 474 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 533 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 534 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 593 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV DGKVT+++ YLSA++E+N IAQA++ LDE+ F E+L+ CR GE I ++ Sbjct: 594 YRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDLIQCRSGGEAIFTESSRV 653 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 654 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 713 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ AG V +VD+ RIVI+ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 714 DSGNCIIARNAGEVAEVDSNRIVIKVDTEKSQTSNL-VDIYSLTKFKRSNKNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD+V DI+ADG +TD G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 773 VNVGDKVEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEEIT DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 833 IHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV++V++F K++R++ +E+ Sbjct: 893 AEQQLTPEERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEK 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + + G KG KK +L+ + ++ P S+W Sbjct: 953 ELIDKARKDFDEEFAVIESVVKSSIEQEVVGAKIQKA-KGLKKGAILTKEFLATLPFSKW 1011 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK++ V++ + YE +K ++ +F+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1012 LEISFEDEKLEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIK 1071 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1072 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1131 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGKKI+ + + + LR LE+V + G + +D+ +L + + Sbjct: 1132 GLASYGLGKKIEKTL---EKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNL 1188 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1189 KGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1248 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1249 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1308 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1309 DIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1358 >gi|194323363|ref|ZP_03057147.1| DNA-directed RNA polymerase, beta subunit [Francisella tularensis subsp. novicida FTE] gi|208779451|ref|ZP_03246796.1| DNA-directed RNA polymerase, beta subunit [Francisella novicida FTG] gi|194322727|gb|EDX20207.1| DNA-directed RNA polymerase, beta subunit [Francisella tularensis subsp. novicida FTE] gi|208744412|gb|EDZ90711.1| DNA-directed RNA polymerase, beta subunit [Francisella novicida FTG] Length = 1361 Score = 1498 bits (3879), Expect = 0.0, Method: Composition-based stats. Identities = 675/1370 (49%), Positives = 934/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL + A R + GL+ K Sbjct: 4 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTAD-AAKGRLHSGLEIVLKQS 62 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ D K + Sbjct: 63 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIV 122 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG+ F D ++ Sbjct: 123 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGA-----FSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG E+IL F + Sbjct: 178 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSETKTITFNS 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L M G + +VD +++ KKLTS +K +K+ GV + I D Sbjct: 238 KGFALRLDNLSNMKGELLKFDIVDAQD-NVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDL 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DIVN TGE+ A D + E LE + ++ ++ + YI +TL Sbjct: 297 VSTLRVAKDIVNEATGEVIAYANDDVTESLLESCVEVGMLELEVIDFITTERGRYISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 357 KYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 416 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 417 DKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 477 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 537 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 596 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV DGKVT+++ YLSA++E+N IAQA++ LDE+ F E+L+ CR GE I ++ Sbjct: 597 YRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDLIQCRSGGEAIFTESSRV 656 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 657 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 716 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ AG V +VD+ RIVI+ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 717 DSGNCIIARNAGEVAEVDSNRIVIKVDTEKSQTSNL-VDIYSLTKFKRSNKNTCINQRPI 775 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD+V DI+ADG +TD G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 776 VNVGDKVEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 835 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEEIT DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 836 IHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 895 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV++V++F K++R++ +E+ Sbjct: 896 AEQQLTPEERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEK 955 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + + G KG KK +L+ + ++ P S+W Sbjct: 956 ELIDKARKDFDEEFAVIESVVKSSIEQEVVGAKIQKA-KGLKKGAILTKEFLATLPFSKW 1014 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK++ V++ + YE +K ++ +F+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1015 LEISFEDEKLEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIK 1074 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1075 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1134 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGKKI+ + + + LR LE+V + G + +D+ +L + + Sbjct: 1135 GLASYGLGKKIEKTL---EKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNL 1191 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1192 KGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1251 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1252 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1311 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1312 DIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1361 >gi|254373487|ref|ZP_04988975.1| DNA-directed RNA polymerase beta chain [Francisella tularensis subsp. novicida GA99-3549] gi|151571213|gb|EDN36867.1| DNA-directed RNA polymerase beta chain [Francisella novicida GA99-3549] Length = 1358 Score = 1498 bits (3879), Expect = 0.0, Method: Composition-based stats. Identities = 676/1370 (49%), Positives = 934/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL + A R + GL+ K Sbjct: 1 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTAD-AAKGRLHSGLEIVLKQS 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ D K + Sbjct: 60 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG+ F D ++ Sbjct: 120 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGA-----FSA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG E+IL F + Sbjct: 175 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSETKTITFNS 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L M G + +VD +++ KKLTS +K +K+ GV + I D Sbjct: 235 KGFALRLDNLSNMKGELLKFDIVDAQD-NVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDL 293 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DIVN TGE+ A D + E LE + ++ ++ + YI +TL Sbjct: 294 VSTLRVAKDIVNEATGEVIAYANDDVTESLLESCVEVGMLELEVIDFITTERGRYISDTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 354 KYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 413 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 414 DKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 473 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 474 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 533 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 534 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 593 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV DGKVT+++ YLSA++E+N IAQA++ LDE+ F E+L+ CR GE I ++ Sbjct: 594 YRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDLIQCRSGGEAIFTESSRV 653 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 654 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 713 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ AG V +VD+ RIVI+ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 714 DSGNCIIARNAGEVAEVDSNRIVIKVDTEKSQTSNL-VDIYSLTKFKRSNKNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD+V DI+ADG +TD G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 773 VNVGDKVEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEEIT DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 833 IHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV++V++F K++R++ +E+ Sbjct: 893 AEQQLTPEERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEK 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + + G KG KK +L+ + +S P S+W Sbjct: 953 ELIDKARKDFDEEFAVIESVVKSSIEQEVVGAKIQKA-KGLKKGAILTKEFLSTLPFSKW 1011 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK++ V++ + YE +K ++ +F+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1012 LEISFEDEKLEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIK 1071 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1072 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1131 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGKKI+ + + + LR LE+V + G + +D+ +L + + Sbjct: 1132 GLASYGLGKKIEKTL---EKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNL 1188 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1189 KGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1248 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1249 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1308 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1309 DIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1358 >gi|56707314|ref|YP_169210.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. tularensis SCHU S4] gi|110669784|ref|YP_666341.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. tularensis FSC198] gi|134301353|ref|YP_001121321.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. tularensis WY96-3418] gi|224456379|ref|ZP_03664852.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. tularensis MA00-2987] gi|254369992|ref|ZP_04985999.1| DNA-directed RNA polymerase beta chain [Francisella tularensis subsp. tularensis FSC033] gi|254374947|ref|ZP_04990428.1| DNA-directed RNA polymerase [Francisella novicida GA99-3548] gi|254874151|ref|ZP_05246861.1| DNA-directed RNA polymerase beta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|81598038|sp|Q5NID2|RPOB_FRATT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|123169674|sp|Q14JT5|RPOB_FRAT1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158513846|sp|A4IW99|RPOB_FRATW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|56603806|emb|CAG44777.1| DNA-directed RNA polymerase beta chain [Francisella tularensis subsp. tularensis SCHU S4] gi|110320117|emb|CAL08160.1| DNA-directed RNA polymerase beta chain [Francisella tularensis subsp. tularensis FSC198] gi|134049130|gb|ABO46201.1| DNA-directed RNA polymerase, beta subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|151568237|gb|EDN33891.1| DNA-directed RNA polymerase beta chain [Francisella tularensis subsp. tularensis FSC033] gi|151572666|gb|EDN38320.1| DNA-directed RNA polymerase [Francisella novicida GA99-3548] gi|254840150|gb|EET18586.1| DNA-directed RNA polymerase beta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|282158440|gb|ADA77831.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. tularensis NE061598] Length = 1358 Score = 1498 bits (3878), Expect = 0.0, Method: Composition-based stats. Identities = 675/1370 (49%), Positives = 934/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL + A R + GL+ K Sbjct: 1 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTAD-AAKGRLHSGLEIVLKQS 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ D K + Sbjct: 60 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG+ F D ++ Sbjct: 120 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGA-----FSA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG E+IL F + Sbjct: 175 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSESKTITFNS 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L M G + +VD +++ KKLTS +K +K+ GV + I D Sbjct: 235 KGFALRLDNLSNMKGELLKFDIVDAQD-NVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDL 293 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DIVN TGE+ A D + E LE + ++ ++ + YI +TL Sbjct: 294 VSTLRVAKDIVNEATGEVIAYANDDVTESLLESCVEVGMLELEVIDFITTERGRYISDTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 354 KYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 413 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 414 DKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 473 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 474 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 533 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 534 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 593 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV DGKVT+++ YLSA++E+N IAQA++ LDE+ F E+L+ CR GE I ++ Sbjct: 594 YRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDLIQCRSGGEAIFTESSRV 653 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 654 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 713 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ AG V +VD+ RIVI+ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 714 DSGNCIIARNAGEVAEVDSNRIVIKVDTEKSQTSNL-VDIYSLTKFKRSNKNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD+V DI+ADG +TD G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 773 VNVGDKVEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEEIT DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 833 IHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV++V++F K++R++ +E+ Sbjct: 893 AEQQLTPEERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEK 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + + G KG KK +L+ + ++ P S+W Sbjct: 953 ELIDKARKDFDEEFAVIESVVKSSIEQEVVGAKIQKA-KGLKKGAILTKEFLATLPFSKW 1011 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK++ V++ + YE +K ++ +F+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1012 LEISFEDEKLEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIK 1071 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1072 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1131 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGKKI+ + + + LR LE+V + G + +D+ +L + + Sbjct: 1132 GLASYGLGKKIEKTL---EKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNL 1188 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1189 KGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1248 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1249 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1308 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1309 DIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1358 >gi|332184682|gb|AEE26936.1| DNA-directed RNA polymerase beta subunit [Francisella cf. novicida 3523] Length = 1358 Score = 1497 bits (3875), Expect = 0.0, Method: Composition-based stats. Identities = 674/1370 (49%), Positives = 934/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL + A R + GL+ K Sbjct: 1 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYRKFLTAD-AAKGRLHSGLELVLKQS 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ D K + Sbjct: 60 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG+ F D ++ Sbjct: 120 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGA-----FSA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG E+IL F + Sbjct: 175 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSESKTITFNS 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L M G + +VD + + KKLTS +K +K+ GV + I D Sbjct: 235 KGFALRLDNLSNMKGEVLKFDIVDAQD-NVIAKKNKKLTSRDVKKIKDAGVDSVAIDFDL 293 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DI+N TGE+ A D + E LE + ++ ++ + YI +TL Sbjct: 294 VSTLRVAKDIINEATGEVIAYANDDVTENLLEACVEIGMLELEVIDFITTERGRYISDTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 354 KYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 413 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 414 DKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 473 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 474 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 533 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 534 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 593 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV DGKVT+++ YLSA++E+N IAQA++ LDE+ F E+L+ CR GE I ++ Sbjct: 594 YRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDLIQCRSGGEAIFTESSRV 653 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 654 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 713 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ AG V +VD+ RIVI+ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 714 DSGNCIIARNAGEVAEVDSNRIVIKVDTEKSQTSNL-VDIYSLTKFKRSNKNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD+V DI+ADG +TD G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 773 VNVGDKVEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEEIT DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 833 IHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV++V++F K++R++ +E+ Sbjct: 893 AEQQLTPEERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEK 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + + G KG KK +L+ + ++ P S+W Sbjct: 953 ELIDKARKDFDEEFAVIESVVKSSIEQDVIGAKIQKA-KGLKKGAILTKEFLATLPFSKW 1011 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK++ V++ + YE +K ++ +F+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1012 LEISFEDEKLEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIK 1071 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1072 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1131 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGK+I+ + + ++ LR LE+V + G + +D+ +L + E Sbjct: 1132 GLASYGLGKRIEKAL---EKTRKVAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCENL 1188 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1189 KHGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1248 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1249 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1308 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1309 DIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1358 >gi|254369863|ref|ZP_04985873.1| DNA-directed RNA polymerase [Francisella tularensis subsp. holarctica FSC022] gi|157122822|gb|EDO66951.1| DNA-directed RNA polymerase [Francisella tularensis subsp. holarctica FSC022] Length = 1358 Score = 1496 bits (3873), Expect = 0.0, Method: Composition-based stats. Identities = 674/1370 (49%), Positives = 934/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL ++ A R + GL+ K Sbjct: 1 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTVD-AAKGRLHSGLEIVLKQS 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ D K + Sbjct: 60 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG+ F D ++ Sbjct: 120 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGA-----FSA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG E+IL F + Sbjct: 175 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSESKTITFNS 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L M G + +VD +++ KKLTS +K +K+ GV + I D Sbjct: 235 KGFALRLDNLSNMKGELLKFDIVDAQD-NVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDL 293 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DIVN TGE+ A D + E LE + ++ I+ + YI +TL Sbjct: 294 VSTLRVAKDIVNEATGEVIAYANDDVTESLLESCVEVGMLELEIIDFITTERGRYISDTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 354 KYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 413 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 414 DKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 473 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 474 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 533 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 534 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 593 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV DGKVT+++ YLSA++E+N IAQA++ LDE+ F E+++ CR GE I ++ Sbjct: 594 YRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDIIQCRSGGEAIFTESSRV 653 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 654 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 713 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ G V +VD+ RIVI+ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 714 DSGNCIIARNVGEVAEVDSNRIVIKVDTEKSQTSNL-VDIYSLTKFKRSNKNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD+V DI+ADG +TD G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 773 VNVGDKVEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEEIT DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 833 IHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV++V++F K++R++ +E+ Sbjct: 893 AEQQLTPEERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEK 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + + G KG KK +L+ + ++ P S+W Sbjct: 953 ELIDKARKDFDEEFAVIESVVKSSIEQEVVGAKIQKA-KGLKKGAILTKEFLATLPFSKW 1011 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK++ V++ + YE +K ++ +F+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1012 LEISFEDEKLEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIK 1071 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1072 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1131 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGKKI+ + + + LR LE+V + G + +D+ +L + + Sbjct: 1132 GLASYGLGKKIEKTL---EKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNL 1188 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1189 KGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1248 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1249 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1308 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1309 DIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1358 >gi|115315373|ref|YP_764096.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. holarctica OSU18] gi|122324640|sp|Q0BKC5|RPOB_FRATO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|115130272|gb|ABI83459.1| DNA-directed RNA polymerase [Francisella tularensis subsp. holarctica OSU18] Length = 1358 Score = 1496 bits (3872), Expect = 0.0, Method: Composition-based stats. Identities = 673/1370 (49%), Positives = 934/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL ++ A R + GL+ K Sbjct: 1 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTVD-AAKGRLHSGLEIVLKQS 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ D K + Sbjct: 60 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG+ F D ++ Sbjct: 120 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGA-----FSA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG E+IL F + Sbjct: 175 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSESKTITFNS 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L M G + +VD +++ KKLTS +K +K+ GV + I D Sbjct: 235 KGFALRLDNLSNMKGELLKFDIVDAQD-NVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDL 293 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DIVN TGE+ A D + E LE + ++ ++ + YI +TL Sbjct: 294 VSTLRVAKDIVNEATGEVIAYANDDVTESLLESCVEVGMLELEVIDFITTERGRYISDTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 354 KYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 413 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 414 DKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 473 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 474 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 533 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 534 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 593 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV DGKVT+++ YLSA++E+N IAQA++ LDE+ F E+++ CR GE I ++ Sbjct: 594 YRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDIIQCRSGGEAIFTESSRV 653 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 654 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 713 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ G V +VD+ RIVI+ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 714 DSGNCIIARNVGEVAEVDSNRIVIKVDTEKSQTSNL-VDIYSLTKFKRSNKNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD+V DI+ADG +TD G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 773 VNVGDKVEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEEIT DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 833 IHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV++V++F K++R++ +E+ Sbjct: 893 AEQQLTPEERLLRAIFNEKASNVVDSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEK 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + + G KG KK +L+ + ++ P S+W Sbjct: 953 ELIDKARKDFDEEFAVIESVVKSSIEQEVVGAKIQKA-KGLKKGAILTKEFLATLPLSKW 1011 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK++ V++ + YE +K ++ +F+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1012 LEISFEDEKLEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIK 1071 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1072 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1131 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGKKI+ + + + LR LE+V + G + +D+ +L + + Sbjct: 1132 GLASYGLGKKIEKTL---EKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNL 1188 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1189 KGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1248 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1249 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1308 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1309 DIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1358 >gi|167627269|ref|YP_001677769.1| DNA-directed RNA polymerase subunit beta [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189043856|sp|B0TX10|RPOB_FRAP2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|167597270|gb|ABZ87268.1| DNA-directed RNA polymerase, beta subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 1358 Score = 1495 bits (3871), Expect = 0.0, Method: Composition-based stats. Identities = 672/1370 (49%), Positives = 935/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL + R + GL+ K Sbjct: 1 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYRKFLNAD-DAKGRLHSGLELVLKQS 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ + K + Sbjct: 60 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKEALPSEKVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG+ F D ++ Sbjct: 120 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGA-----FSA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG EEIL+ F S Sbjct: 175 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEEILNRFSDSKTISFNN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L M G + ++D +++ KKLTS +K +K+ GV + I D Sbjct: 235 KGFALKLDDLSSMKGEVLKFDIIDEKD-NTIVKKNKKLTSRDIKKIKDAGVDSVAIDFDL 293 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DIVN TGE+ A D + E LE + + ++ ++ + YI +TL Sbjct: 294 VSTLRVAKDIVNEATGEVIAYANDDVTENLLEACVEAGMLELEVIDFITTERGRYISDTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D K+ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 354 KYDLTKNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 413 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 414 DNVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 473 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 474 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 533 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 534 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 593 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV +GKVTN++ YLSA++E++ IAQA++ LD++ F E+L+ CR GE I ++ Sbjct: 594 YRKVVNGKVTNEIEYLSAIDEDHYVIAQASTKLDKNNHFVEDLIQCRSGGEAIFTESSRV 653 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 654 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 713 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ AG + +VD+ RIV++ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 714 DSGNCIIARNAGEIAEVDSNRIVVKVDTEKSKTSKL-VDIYSLTKFKRSNKNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD++ DI+ADG +TD G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 773 VNVGDKIEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEE+T DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 833 IHIEEFTCVARDTKLGPEEVTADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV++V++F K++R++ +E+ Sbjct: 893 AEQQLTPEERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEK 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + G KG KK VL+ + ++ P S+W Sbjct: 953 ELIDKARKDFDEEFAVIESVVKSSIETDVIGAKIQKA-KGLKKGAVLTKEFLATLPFSKW 1011 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK+++ V++ + YE +K ++ RF+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1012 LEISFEDEKLEQKVQNAREYYEEAKIAVDARFEAKKKSIMQSNELSPGVLKTVKVFVAIK 1071 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1072 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1131 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGKKI+ + + + LR LE+V + G + +D+ +L + E Sbjct: 1132 GLASYGLGKKIEQTL---EKTRKAAELRKTLEEVYNSVGDKKVDLKALNDEEILNLCENL 1188 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1189 KGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1248 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1249 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1308 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1309 DITGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1358 >gi|290954467|ref|ZP_06559088.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. holarctica URFT1] gi|295312072|ref|ZP_06802885.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. holarctica URFT1] gi|182676593|sp|A7NEC0|RPOB_FRATF RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1358 Score = 1495 bits (3871), Expect = 0.0, Method: Composition-based stats. Identities = 673/1370 (49%), Positives = 933/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL ++ A R + GL+ K Sbjct: 1 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTVD-AAKGRLHSGLEIVLKQS 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ D K + Sbjct: 60 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG+ F D ++ Sbjct: 120 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGA-----FSA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG E+IL F + Sbjct: 175 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSESKTITFNS 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L M G + +VD +++ KKLTS +K +K+ GV + I D Sbjct: 235 KGFALRLDNLSNMKGELLKFDIVDAQD-NVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDL 293 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DIVN TGE+ A D + E LE + ++ ++ + YI +TL Sbjct: 294 VSTLRVAKDIVNEATGEVIAYANDDVTESLLESCVEVGMLELEVIDFITTERGRYISDTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 354 KYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 413 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 414 DKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 473 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 474 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 533 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 534 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 593 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV DGKVT+++ YLSA++E+N IAQA++ LDE+ F E+++ CR GE I ++ Sbjct: 594 YRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDIIQCRSGGEAIFTESSRV 653 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 654 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 713 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ G V +VD+ RIVI+ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 714 DSGNCIIARNVGEVAEVDSNRIVIKVDTEKSQTSNL-VDIYSLTKFKRSNKNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD+V DI+ADG +TD G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 773 VNVGDKVEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEEIT DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 833 IHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV+ V++F K++R++ +E+ Sbjct: 893 AEQQLTPEERLLRAIFNEKASNVVDSSLRMPSGTSGTVISVQVFENDKGGKSKRALKIEK 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + + G KG KK +L+ + ++ P S+W Sbjct: 953 ELIDKARKDFDEEFAVIESVVKSSIEQEVVGAKIQKA-KGLKKGAILTKEFLATLPLSKW 1011 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK++ V++ + YE +K ++ +F+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1012 LEISFEDEKLEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIK 1071 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1072 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1131 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGKKI+ + + + LR LE+V + G + +D+ +L + + Sbjct: 1132 GLASYGLGKKIEKTL---EKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNL 1188 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1189 KGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1248 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1249 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1308 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1309 DIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1358 >gi|156503214|ref|YP_001429279.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. holarctica FTNF002-00] gi|156253817|gb|ABU62323.1| DNA-directed RNA polymerase, beta subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 1361 Score = 1495 bits (3871), Expect = 0.0, Method: Composition-based stats. Identities = 673/1370 (49%), Positives = 933/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL ++ A R + GL+ K Sbjct: 4 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTVD-AAKGRLHSGLEIVLKQS 62 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ D K + Sbjct: 63 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIV 122 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG+ F D ++ Sbjct: 123 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGA-----FSA 177 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG E+IL F + Sbjct: 178 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSESKTITFNS 237 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L M G + +VD +++ KKLTS +K +K+ GV + I D Sbjct: 238 KGFALRLDNLSNMKGELLKFDIVDAQD-NVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDL 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DIVN TGE+ A D + E LE + ++ ++ + YI +TL Sbjct: 297 VSTLRVAKDIVNEATGEVIAYANDDVTESLLESCVEVGMLELEVIDFITTERGRYISDTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 357 KYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 416 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 417 DKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 477 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 537 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 596 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV DGKVT+++ YLSA++E+N IAQA++ LDE+ F E+++ CR GE I ++ Sbjct: 597 YRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDIIQCRSGGEAIFTESSRV 656 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 657 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 716 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ G V +VD+ RIVI+ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 717 DSGNCIIARNVGEVAEVDSNRIVIKVDTEKSQTSNL-VDIYSLTKFKRSNKNTCINQRPI 775 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD+V DI+ADG +TD G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 776 VNVGDKVEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 835 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEEIT DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 836 IHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 895 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV+ V++F K++R++ +E+ Sbjct: 896 AEQQLTPEERLLRAIFNEKASNVVDSSLRMPSGTSGTVISVQVFENDKGGKSKRALKIEK 955 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + + G KG KK +L+ + ++ P S+W Sbjct: 956 ELIDKARKDFDEEFAVIESVVKSSIEQEVVGAKIQKA-KGLKKGAILTKEFLATLPLSKW 1014 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK++ V++ + YE +K ++ +F+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1015 LEISFEDEKLEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIK 1074 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1075 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1134 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGKKI+ + + + LR LE+V + G + +D+ +L + + Sbjct: 1135 GLASYGLGKKIEKTL---EKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNL 1191 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1192 KGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1251 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1252 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1311 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1312 DIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1361 >gi|187931083|ref|YP_001891067.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. mediasiatica FSC147] gi|226699408|sp|B2SFD6|RPOB_FRATM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|187711992|gb|ACD30289.1| DNA-directed RNA polymerase, beta subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 1358 Score = 1495 bits (3871), Expect = 0.0, Method: Composition-based stats. Identities = 673/1370 (49%), Positives = 934/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL + A R + GL+ K Sbjct: 1 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTAD-AAKGRLHSGLEIVLKQS 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ D K + Sbjct: 60 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG+ F D ++ Sbjct: 120 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGA-----FSA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG E+IL F + Sbjct: 175 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSESKTITSNS 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L + M G + +VD +++ KKLTS +K +K+ GV + I D Sbjct: 235 KGFALRLDSLSNMKGELLKFDIVDAQD-YVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDL 293 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DIVN TGE+ A D + E LE + ++ ++ + YI +TL Sbjct: 294 VSTLRVAKDIVNEATGEVIAYANDDVTESLLESCVEVGLLELEVIDFITTERGRYISDTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 354 KYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 413 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 414 DKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 473 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 474 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 533 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 534 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 593 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV DGKVT+++ YLSA++E+N IAQA++ LDE+ F E+L+ CR GE I ++ Sbjct: 594 YRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNYFVEDLIQCRSGGEAIFTESSRV 653 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 654 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 713 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ AG V +VD+ RIVI+ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 714 DSGNCIIARNAGEVAEVDSNRIVIKVDTEKSQTSNL-VDIYSLTKFKRSNKNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD+V DI+ADG + D G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 773 VNVGDKVEAGDILADGFAADFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEEIT DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 833 IHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV++V++F K++R++ +E+ Sbjct: 893 AEQQLTPEERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEK 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + + G KG KK +L+ + ++ P S+W Sbjct: 953 ELIDKARKDFDEEFAVIESVVKSSIEQEVVGAKIQKA-KGLKKGAILTKEFLATLPFSKW 1011 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK++ V++ + YE +K ++ +F+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1012 LEISFEDEKLEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIK 1071 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1072 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1131 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGKKI+ + + + LR LE++ + G + +D+ +L + + Sbjct: 1132 GLASYGLGKKIEKTL---EKTRKAAELRKTLEEIYNSVGDKKVNLEALNDEEILTLCDNL 1188 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1189 KGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1248 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1249 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1308 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1309 DIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1358 >gi|298531092|ref|ZP_07018493.1| DNA-directed RNA polymerase, beta subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298509115|gb|EFI33020.1| DNA-directed RNA polymerase, beta subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 1363 Score = 1495 bits (3870), Expect = 0.0, Method: Composition-based stats. Identities = 679/1349 (50%), Positives = 940/1349 (69%), Gaps = 15/1349 (1%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K FG+ +D+P L+++Q SY +FL P R ++GL+A F+SVFPI F+ +A L Sbjct: 6 KNFGQIEYGLDVPHLLKLQLDSYMNFLQEEADPMNRQDQGLEAVFRSVFPIEDFNKSATL 65 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 E+VSYE + PK+DV +CL + LTY P++I +RLIV+DVD+ +G ++++DIKEQ IY G Sbjct: 66 EYVSYEINQPKYDVAECLSKGLTYEAPIRIKVRLIVYDVDDESGNRTVRDIKEQDIYFGT 125 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 LPLMT+ GTF+I G +RI+V+QL RSPGI F+HD G+ S K+LY+ RIIP +G W+D Sbjct: 126 LPLMTEKGTFIINGTERIIVNQLQRSPGIIFEHDSGKTHTSRKVLYSSRIIPMRGSWLDF 185 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 EFD KDI++VRIDRRRK+ VT L ALGM E+IL+ FY + D + + Sbjct: 186 EFDPKDILYVRIDRRRKMYVTILLKALGMSEEDILNYFYDREQLKF-KDQKVYRKVRSSH 244 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 ++D + G ++ +G+ +T + + + + + + I L +VA D+V+ Sbjct: 245 FRKEIAYKDILDSE-GNVLVRAGRPVTKRVWRQMAKAK-EHMEIDPGILPKQFVAHDLVH 302 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 ETGE+ E GD +++ +++IF S I D+ ILY + ++ +R+TL DK +D+ +A Sbjct: 303 PETGEVLAEVGDALEQDVVDKIFASGIEDVEILYTGGQDVSSSLRDTLKLDKTQDQLEAQ 362 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 ++IY+ +RP T +A S F+ LF +SD YDLS VGR K+N RL L+ P D R + E Sbjct: 363 VEIYKRLRPSSPPTPEIASSFFDNLFRNSDYYDLSPVGRYKLNARLGLNLPTDYRTLSNE 422 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DI+ ++K L+ L++ G DDID+LGNRRVR VGE+++NQYR+GL+RMER++KER+S + Sbjct: 423 DILRVVKHLIKLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAVKERMSLQE 482 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 + ++MP DLIN KPV + + EFF +SQLSQ + N LS +TH RRLSALG GG+ R RA Sbjct: 483 VATLMPHDLINPKPVTAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERA 542 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVHP+HYGRICP ET EG NIGL+ SLT+ A+VN +GFIETPYR V DG VTN+V Sbjct: 543 GFEVRDVHPSHYGRICPIETPEGPNIGLIVSLTTHAQVNDFGFIETPYRIVKDGMVTNEV 602 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 YL A +E + IAQAN+ +DE+G FT EL+ R GE L+PR+++ +D SP Q+VSI Sbjct: 603 KYLDASKEADEVIAQANAPVDEEGRFTSELITSRIHGELNLMPRDEVTLMDVSPTQIVSI 662 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 +++LIPFLE+DD+NR LMG NMQRQAVPLLK E P VGTGME +VA+ SG+ +A+ GI Sbjct: 663 SSALIPFLEHDDANRALMGSNMQRQAVPLLKPERPLVGTGMEGLVARDSGSCEIARADGI 722 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 V VDA ++++ E D S+ Y L K+ +SNQN+C QRP V + D++ Sbjct: 723 VRYVDANKVIVSYDE-PPDKSSQDTVCYDLQKYHKSNQNSCFGQRPRVLPDQRFKAGDVL 781 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGPS G+LALG+N+ VAFMPW GYNFEDS+LISERMV +DVF+S+HIEEFEV+ARDT Sbjct: 782 ADGPSIVDGELALGKNLSVAFMPWCGYNFEDSILISERMVKDDVFSSVHIEEFEVIARDT 841 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEITRDIPNV E+ LK +D+ GII +GA++ DILVGKITPKGE+ +TPEE+LLR Sbjct: 842 KLGPEEITRDIPNVGEDMLKYLDDSGIIMIGAKIQQDDILVGKITPKGETQLTPEERLLR 901 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFG+KA DV++TSL+VP G+ GTV+D+++FNR +K+ER+ +E +++ LA+ ++ Sbjct: 902 AIFGDKARDVKNTSLKVPPGIEGTVIDIKVFNRRSGEKDERTRIIEDRELDRLAQSEEKH 961 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ------- 1027 L R+ E++ G+ G KK VL ++ S R + ++ Sbjct: 962 VQGLTAQTRDRIWEVVSGKRLAQTIMGRKKGQVL-AEANSTLQREDLDRIPLKKLAGSFA 1020 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 ++V +E L YE +++ + K +K+ GDD+PPGV ++VKV+VA+KR + G Sbjct: 1021 SKEVNEAIEHLIKLYEEQLKFIQNVYSQKRDKVVEGDDLPPGVTKMVKVYVAVKRKLNVG 1080 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+VS ILP EDMPF DGTP+DIVL+PLGVPSRMN+GQI ETHLGWA Sbjct: 1081 DKMAGRHGNKGVVSCILPEEDMPFFDDGTPIDIVLSPLGVPSRMNIGQIMETHLGWAARE 1140 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG+++ ++ + D+ LR ++ + + + ++ DD+S +R + + G+ Sbjct: 1141 LGRQLGRML---EQGVDVGVLRKEVDDIFNSPEISRLAAEMDDESFVRAVRELEPGILTK 1197 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA EE I L+ A L + G+++LYDG TG+ F +TVG +YMLKL+H+V +K+ Sbjct: 1198 TPVFDGAKEEEIWPWLKKAGLSDDGKAVLYDGRTGDAFHNRITVGNMYMLKLHHLVDEKI 1257 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW I+AYGA+Y+LQE LT+KSDDV GR Sbjct: 1258 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWAIEAYGASYLLQEFLTVKSDDVAGRVN 1317 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQA 1356 +YE IV GN+ E+ PESFNVL+KE+ A Sbjct: 1318 MYEKIVKGNNFLESAMPESFNVLIKELMA 1346 >gi|241667825|ref|ZP_04755403.1| DNA-directed RNA polymerase subunit beta [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876368|ref|ZP_05249078.1| DNA-directed RNA polymerase beta subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842389|gb|EET20803.1| DNA-directed RNA polymerase beta subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 1358 Score = 1494 bits (3869), Expect = 0.0, Method: Composition-based stats. Identities = 672/1370 (49%), Positives = 935/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL + R + GL+ K Sbjct: 1 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYRKFLNAD-DAKGRLHSGLELVLKQS 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ + K + Sbjct: 60 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKEALPSEKVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG+ F D ++ Sbjct: 120 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGA-----FSA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG EEIL+ F S Sbjct: 175 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEEILNRFSDSKTISFNN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L M G + ++D +++ KKLTS +K +K+ GV + I D Sbjct: 235 KGFALKLDDLSSMKGEVLKFDIIDEKD-NTIVKKNKKLTSRDIKKIKDAGVDSVAIDFDL 293 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DIVN TGE+ A D + E LE + + ++ ++ + YI +TL Sbjct: 294 VGTLRVAKDIVNEATGEVIAYANDDVTENLLEACVEAGMLELEVIDFITTERGRYISDTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D K+ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 354 KYDLTKNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 413 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 414 DNVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 473 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 474 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 533 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 534 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 593 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV +GKVTN++ YLSA++E++ IAQA++ LD++ F E+L+ CR GE I ++ Sbjct: 594 YRKVVNGKVTNEIEYLSAIDEDHYVIAQASTKLDKNNHFVEDLIQCRSGGEAIFTESSRV 653 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 654 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 713 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ AG + +VD+ RIV++ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 714 DSGNCIIARNAGEIAEVDSNRIVVKVDTEKSKTSKL-VDIYSLTKFKRSNKNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD++ DI+ADG +TD G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 773 VNVGDKIEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEE+T DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 833 IHIEEFTCVARDTKLGPEEVTADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV++V++F K++R++ +E+ Sbjct: 893 AEQQLTPEERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEK 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + G KG KK VL+ + ++ P S+W Sbjct: 953 ELIDKARKDFDEEFAVIESVVKSSIETDVIGAKIQKA-KGLKKGAVLTKEFLATLPFSKW 1011 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK+++ V++ + YE +K ++ RF+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1012 LEISFEDEKLEQKVQNAREYYEEAKIAVDARFEAKKKSIMQSNELSPGVLKTVKVFVAIK 1071 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1072 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1131 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGKKI+ + + + LR LE+V + G + +D+ +L + E Sbjct: 1132 GLASYGLGKKIEQTL---EKTRKAAELRKTLEEVYNSVGDKKVDLKALNDEEILNLCENL 1188 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1189 KGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1248 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1249 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1308 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1309 DITGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1358 >gi|89257013|ref|YP_514375.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. holarctica LVS] gi|167009393|ref|ZP_02274324.1| DNA-directed RNA polymerase subunit beta [Francisella tularensis subsp. holarctica FSC200] gi|122500258|sp|Q2A1M7|RPOB_FRATH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|89144844|emb|CAJ80183.1| DNA-directed RNA polymerase beta chain [Francisella tularensis subsp. holarctica LVS] Length = 1358 Score = 1493 bits (3866), Expect = 0.0, Method: Composition-based stats. Identities = 672/1370 (49%), Positives = 933/1370 (68%), Gaps = 14/1370 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P I+D+P L+ +Q SY FL ++ A R + GL+ K Sbjct: 1 MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTVD-AAKGRLHSGLEIVLKQS 59 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FP+ + +G L +V Y+ P FD +C R TY PL + LRL+V++ D K + Sbjct: 60 FPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 +DI+E+ +YMGD+PLMT +GTF+I G +R+VVSQLHRSPG F D ++ Sbjct: 120 EDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGAFFSKDDSEEGA-----FSA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFDSK II RIDR+RK T L ALG E+IL F + Sbjct: 175 RIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSESKTITFNS 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L M G + +VD +++ KKLTS +K +K+ GV + I D Sbjct: 235 KGFALRLDNLSNMKGELLKFDIVDAQD-NVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDL 293 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + L VA+DIVN TGE+ A D + E L+ + ++ ++ + YI +TL Sbjct: 294 VSTLRVAKDIVNEATGEVIAYANDDVTESLLKSCVEVGMLELEVIDFITTERGRYISDTL 353 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D ++ +AL++IY+V+RPGD + +++F LFF +Y LS +GR+K+N RL Sbjct: 354 KYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGS 413 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D D+ + DI+ +I+ L+++R+GKG +DDID+LGNRRVRSVGEM++NQ+R+GL R Sbjct: 414 DKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYR 473 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +E+ I+E +S V D +MP+D++N+KP+ +A+ EFF S LSQ + N LS +TH RR+ Sbjct: 474 VEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRI 533 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ARVN YGF+E P Sbjct: 534 SALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAP 593 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV DGKVT+++ YLSA++E+N IAQA++ LDE+ F E+++ CR GE I ++ Sbjct: 594 YRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDIIQCRSGGEAIFTESSRV 653 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S KQ+VS AA+LIPFLE+DD+NRVLMG NMQRQAVP LK+E P VGTGME +VA+ Sbjct: 654 QYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVAR 713 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG I+A+ G V +VD+ RIVI+ S VDIY L KF+RSN+NTC+NQRP+ Sbjct: 714 DSGNCIIARNVGEVAEVDSNRIVIKVDTEKSQTSNL-VDIYSLTKFKRSNKNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V VGD+V DI+ADG +TD G+L+LG N++VAFMPW+GYNFEDS+L+SER+V +D +TS Sbjct: 773 VNVGDKVEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF +ARDTKLGPEEIT DIPNVSE L +DE GI+ +GA V GDILV KITPK Sbjct: 833 IHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 E +TPEE+LLRAIF EKA +V D+SLR+PSG SGTV++V++F K++R++ +E+ Sbjct: 893 AEQQLTPEERLLRAIFNEKASNVVDSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEK 952 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E I+ +D D+E +++ + S + + + G KG KK +L+ + ++ P S+W Sbjct: 953 ELIDKARKDFDEEFAVIESVVKSSIEQEVVGAKIQKA-KGLKKGAILTKEFLATLPLSKW 1011 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + +DEK++ V++ + YE +K ++ +F+ K + I +++ PGVL+ VKVFVA+K Sbjct: 1012 LEISFEDEKLEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIK 1071 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 + IQ GDKMAGRHGNKG+VSR+LP EDMP+++DGTPVD+ LNPLG+PSRMN+GQI E HL Sbjct: 1072 KRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHL 1131 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQW 1200 G A GLGKKI+ + + + LR LE+V + G + +D+ +L + + Sbjct: 1132 GLASYGLGKKIEKTL---EKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNL 1188 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 K GVP++TPVFDGA EE I S+L++ +GQ L+DG TG+PFDR VTVGY+YMLKL+ Sbjct: 1189 KGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLD 1248 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW +QAYGAAY L+EMLT+KSD Sbjct: 1249 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSD 1308 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 D+ GR+++Y++IV G T PESFNVL E++ALG+ +D + S + Sbjct: 1309 DIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE 1358 >gi|301059228|ref|ZP_07200165.1| DNA-directed RNA polymerase, beta subunit [delta proteobacterium NaphS2] gi|300446663|gb|EFK10491.1| DNA-directed RNA polymerase, beta subunit [delta proteobacterium NaphS2] Length = 1434 Score = 1491 bits (3860), Expect = 0.0, Method: Composition-based stats. Identities = 711/1431 (49%), Positives = 967/1431 (67%), Gaps = 79/1431 (5%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R RK FGK ++I+ P+LI +QK SY+ +L ++ P+ER + GLQAA+ VFPI F+ Sbjct: 8 RRRARKSFGKISKVIETPNLIAMQKRSYERYLQQDVPPEEREDVGLQAAYAGVFPIHDFA 67 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 G + LEFV Y F+ K+ +DCL + +TY L++T+RL+VFD D + KSI+DIKEQ Sbjct: 68 GTSSLEFVKYAFEGAKYSEEDCLSKGMTYEASLRLTVRLVVFDTDTVSETKSIRDIKEQE 127 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 IY G LP+MT GTF+I G +R VVSQLHRSPG FDHDKG+ SGKLLY+ RIIP +G Sbjct: 128 IYFGTLPIMTDRGTFIINGTERAVVSQLHRSPGAFFDHDKGKTHASGKLLYSARIIPLRG 187 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG------- 242 W+D EFD KD ++VRIDRRRK PVT L ALG + ++L FY + Sbjct: 188 SWLDFEFDPKDFLYVRIDRRRKFPVTILLKALGYTANDLLHYFYDTEMVEIGETGAWREA 247 Query: 243 -------DFWCFPLSAADLMVGAK------------------------------------ 259 D + D V AK Sbjct: 248 IPELLAQDRVEKDIVGEDEAVIAKKGVKFTKRLLRNLGTNEAATARIPMVKRLPFDVEKD 307 Query: 260 ----VSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFL----------GITSDCLCG 305 ++ + D +TG+ ++ +G LT + L EKG+ + + + + G Sbjct: 308 AELQLTEEITDSETGDMIVAAGSILTEEIYALLDEKGISRITCVDRKRIRIPVEPESIEG 367 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 V +DI++ ETGEI +E+ + + + ++ + I + L +D + IR TLV D Sbjct: 368 RVVCDDIIDPETGEILLESNNHLTMEKIKALLERGIVHLECLVLDGHGISRSIRETLVGD 427 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL-NLDT 424 + ++A LDIYR MRP T VAE+ F+ LFF+ D YDLS VGR+K+N RL D Sbjct: 428 RINTPEEARLDIYRKMRPSSPPTPEVAETFFHNLFFNLDTYDLSRVGRLKLNYRLGMEDV 487 Query: 425 PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 + R +RKEDI ++ L+ L++ + +DDIDNLGNRRVR+VGE+L+NQYR+GL+RMER Sbjct: 488 SLEERTLRKEDIFGTVQELIRLKSAEAMVDDIDNLGNRRVRAVGELLENQYRVGLVRMER 547 Query: 485 SIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSAL 544 +IKER+S +++++MP DLIN+KPV + V EFF +SQLSQ + N LS +TH RRLSAL Sbjct: 548 AIKERMSLQEVETLMPHDLINSKPVSAVVKEFFGTSQLSQFMDQTNPLSEVTHKRRLSAL 607 Query: 545 GQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604 G GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+ SL+++A+VN +GFIETPYR+ Sbjct: 608 GPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIVSLSTYAQVNEFGFIETPYRR 667 Query: 605 VCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 V + K T + YLSA++E++ IAQAN+ LDE+G+F + R GE VP + ++ Sbjct: 668 VNEKKATGSLEYLSALDEKDFPIAQANAPLDEEGNFIRDEAAVRIEGEAYKVPVGDVKYM 727 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D SP Q+VSI+ASLIPFLE+DD+NR LMG NMQRQAVPLL+A+AP VGTG+E VVA+ SG Sbjct: 728 DVSPDQLVSISASLIPFLEHDDANRALMGSNMQRQAVPLLRAKAPLVGTGVEKVVARDSG 787 Query: 725 AAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 +++A+R GI+E VDA RIVIR + D + S V+I +L KF+RSNQN+C NQ+P+VK Sbjct: 788 ISVIARRDGIIEHVDASRIVIRFTDTDEND-DSEVEICKLTKFRRSNQNSCYNQKPIVKK 846 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G+ V++ IIADGP+ + G+LALGRN++VAFM W GYNFEDS+LISER+V +DV+TSIHI Sbjct: 847 GEFVKKGQIIADGPAMEQGELALGRNVMVAFMSWGGYNFEDSILISERVVKDDVYTSIHI 906 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +EFE+++RDTKLG EEITRDIPNV E+ L+N+D+ GI+ +GAE+ PGDILVGKITPKGE+ Sbjct: 907 DEFEILSRDTKLGKEEITRDIPNVGEDALRNLDDSGIVKIGAEIGPGDILVGKITPKGET 966 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 ++PEEKLLRAIFG+KA DV+D+S+RVP GV GTV+D ++F+R G++K+ R++++E E+ Sbjct: 967 QLSPEEKLLRAIFGDKAGDVKDSSMRVPPGVYGTVIDAKVFSRGGVEKDARALAIEAEET 1026 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-------GPKGFKKSTVLSSDLISEYP 1017 L +D DE +++R+ +L+ I G+ S G KK+ L+ + I+ P Sbjct: 1027 RRLRKDLQDEVEVVERSAREKLLGIFEGKALKSNLRDKKSGAILLKKTEHLTREDIASIP 1086 Query: 1018 RSQ--WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075 W V +++ E++ + L +NKIE GD++ PGV+++VK Sbjct: 1087 IEAIAWADVKVPMDEI-EKAETIVSKCTAKVERLTTICENKIENFDLGDELAPGVVKMVK 1145 Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135 V+VA+KR + GDKMAGRHGNKG++SRILP EDMP+ DGTPVDIVLNPLGVPSRMNVGQ Sbjct: 1146 VYVAVKRKLSVGDKMAGRHGNKGVLSRILPVEDMPYFADGTPVDIVLNPLGVPSRMNVGQ 1205 Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 + ETHLGWA G+G K++ L + ++ L+ +K + ++ +DD +L+ Sbjct: 1206 VLETHLGWASHGMGMKVREL---FGKINNVQRLKDKFKKWFSKDEYEAFFANLEDDELLK 1262 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 + GVP++TPVFDGA E+ I S L A L +GQ+ LYDG TGEPFD+ VTVG +Y Sbjct: 1263 ESSLMLDGVPLATPVFDGASEDEIKSFLEEAGLSATGQATLYDGRTGEPFDQDVTVGIMY 1322 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 ++KL+H+V DK++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE L Sbjct: 1323 IMKLHHLVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYTLQEFL 1382 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 T+KSDDV GRTR+YE IV GN+ E G PESF VL+KE+Q+LGL ++L Sbjct: 1383 TVKSDDVAGRTRMYERIVKGNNALEPGLPESFKVLMKELQSLGLEMELFED 1433 >gi|57238903|ref|YP_180039.1| DNA-directed RNA polymerase subunit beta [Ehrlichia ruminantium str. Welgevonden] gi|58578835|ref|YP_197047.1| DNA-directed RNA polymerase subunit beta [Ehrlichia ruminantium str. Welgevonden] gi|81353036|sp|Q5HC05|RPOB_EHRRW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|57160982|emb|CAH57888.1| DNA-directed RNA polymerase beta chain [Ehrlichia ruminantium str. Welgevonden] gi|58417461|emb|CAI26665.1| DNA-directed RNA polymerase beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 1380 Score = 1483 bits (3839), Expect = 0.0, Method: Composition-based stats. Identities = 704/1376 (51%), Positives = 963/1376 (69%), Gaps = 28/1376 (2%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + K+ +I D + DLI++Q+ SY+ F+ ++ + G++ F+S+FPI G A Sbjct: 19 RLSYAKSIDIKDSLTDLIKIQRDSYNAFIGIDQDV----DSGIKNIFQSMFPIQDLLGRA 74 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +L+FVSY P++D +C+ R +TY+VP++I LR IV+ V DE T K Sbjct: 75 VLQFVSYSIGEPQYDEYECIKRGITYSVPIRIVLRFIVWKVQEVSFKEVKYVVDEETSEK 134 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIK IKEQ + +GDLP MT GTF+I G++R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 135 SIKYIKEQEVSIGDLPTMTSYGTFIINGVERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 194 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 RIIP +G W+D EFD KDI++ RIDR+RK+PV+ L ALG+ + EIL TFY KI Y + Sbjct: 195 LARIIPYRGSWLDFEFDIKDILYFRIDRKRKLPVSLLLRALGLSNSEILDTFYDKIRYER 254 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P D G ++S LVDID G ++++ ++T L K L G+K + Sbjct: 255 CENGWVVPFVV-DRFRGVRLSYDLVDID-GNVLVKANTRITLRLAKKLASDGLKKYLVPF 312 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + GL++A D+V+ + + + AG+ I + + ++ +I +I IL +D + YI N Sbjct: 313 AEIQGLFIANDLVDPASNVMIMCAGESITSEHINKLKLFDINEIFILNIDFLTVGPYILN 372 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN +DAL +IY+V+R G+ + ++ F+ LFF+ ++YDLSTVGR+K+N L Sbjct: 373 TLFLDKNISYEDALFEIYKVLRSGESPSLDTMKAFFDGLFFEKERYDLSTVGRIKLNDHL 432 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD +DV + K+DII +IK LV LR+G+G +DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 433 GLDISEDVTVLTKDDIIHVIKKLVLLRDGEGFVDDIDHLGNRRVRSVGEFIENQFRIGIL 492 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ MP D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 493 RLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 552 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +AR+N +GFIE+ Sbjct: 553 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYARINKHGFIES 612 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV +G VT+ V YL AM+E N YIA A+++LDE+ F +++++CR G ++V RE+ Sbjct: 613 PYRKVDNGVVTDKVEYLLAMQESNYYIADASATLDENNRFVDDMLYCRHDGNFVMVKREQ 672 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D+ID SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLKA+AP VGTGMES+VA Sbjct: 673 VDYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKADAPLVGTGMESIVA 732 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG ++AKR+GIV +VD + IVIR+ + + + GVDIY L KFQRSN NTC+NQ+P Sbjct: 733 AGSGTVVLAKRSGIVHRVDGLYIVIRAFDKEKNEY-LGVDIYNLRKFQRSNHNTCINQKP 791 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVK GD VR ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V +DVFT Sbjct: 792 LVKPGDYVRENDVIADGSAIDQGELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKDVFT 851 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFE + RDT LGPE+I R IP+V+E+ L ++D+ GI+ VGAEV+ GDILVGK+TP Sbjct: 852 SIHIEEFECVVRDTALGPEKIMRSIPDVNEDSLSHLDDVGIVNVGAEVSAGDILVGKVTP 911 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 + + PE KLL IFGEK D D+SL +P V GTVVDV +F R G+++N+RS+ ++ Sbjct: 912 RPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPIDVEGTVVDVHVFVRRGVEENDRSLLIK 971 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +I +++D E ++ Y L +L N + + D + P+ Sbjct: 972 QNEINGFIKERDYEIDVVSEYFYDELKRVLVNTNTEYNNQNIE-------DYLKSIPQKS 1024 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW + DE V + LK ++++ +F KI+K+ +G D+P GVL +VKVFVA+ Sbjct: 1025 WWDIKLSDESVLSQISDLKEKFDSMIENAHSKFDQKIDKLNYGYDLPQGVLCIVKVFVAV 1084 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 K +Q GDKMAGRHGNKG++SRI+P EDMP+L+DGTPVDI+LN LGVPSRMNVGQI ETH Sbjct: 1085 KHNLQPGDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGVPSRMNVGQILETH 1144 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA V LGKKI +++ D I+ LR+FL++V I DD +L AE+ Sbjct: 1145 LGWASVNLGKKIGNIL-DNIDELTIAHLRNFLDQVYDGQDLKYSIRSMSDDDLLAFAERL 1203 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++ PVF+G + I+++L++ADLD SGQ LYDG GE FDR VTVGYIYMLKL+ Sbjct: 1204 RDGVPMAAPVFEGPKDNQISNLLKLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYMLKLH 1263 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSD Sbjct: 1264 HLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1323 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 D+VGR ++YESI+ G+ FE G PESFNV+VKE+++L L + L+ + + Sbjct: 1324 DIVGRVKIYESIIKGDSNFECGIPESFNVMVKELRSLCLDVALKQDKDFLHDRKIN 1379 >gi|58616892|ref|YP_196091.1| DNA-directed RNA polymerase subunit beta [Ehrlichia ruminantium str. Gardel] gi|75356604|sp|Q5FFD9|RPOB_EHRRG RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|58416504|emb|CAI27617.1| DNA-directed RNA polymerase beta chain [Ehrlichia ruminantium str. Gardel] Length = 1380 Score = 1483 bits (3838), Expect = 0.0, Method: Composition-based stats. Identities = 704/1376 (51%), Positives = 963/1376 (69%), Gaps = 28/1376 (2%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + K+ +I D + DLI++Q+ SY+ F+ ++ + G++ F+S+FPI G A Sbjct: 19 RLSYAKSIDIKDSLTDLIKIQRDSYNAFIGIDQDV----DSGIKNIFQSMFPIQDLLGRA 74 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +L+FVSY P++D +C+ R +TY+VP++I LR IV+ V DE T K Sbjct: 75 VLQFVSYSIGEPQYDEYECIKRGITYSVPIRIVLRFIVWKVQEVSFKEVKYVVDEETSEK 134 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIK IKEQ + +GDLP MT GTF+I G++R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 135 SIKYIKEQEVSIGDLPTMTSYGTFIINGVERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 194 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 RIIP +G W+D EFD KDI++ RIDR+RK+PV+ L ALG+ + EIL TFY KI Y + Sbjct: 195 LARIIPYRGSWLDFEFDIKDILYFRIDRKRKLPVSLLLRALGLSNSEILDTFYDKIRYER 254 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + W P D G ++S LVDID G ++++ ++T L K L G+K + Sbjct: 255 CENGWVVPFVV-DRFRGVRLSYDLVDID-GNVLVKANTRITLRLAKKLASDGLKKYLVPF 312 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + GL++A D+V+ + + + AG+ I + + ++ +I +I IL +D + YI N Sbjct: 313 AEIQGLFIANDLVDPASNVMIMCAGESITSEHINKLKLFDINEIFILNIDFLTVGPYILN 372 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN +DAL +IY+V+R G+ + ++ F+ LFF+ ++YDLSTVGR+K+N L Sbjct: 373 TLFLDKNISYEDALFEIYKVLRSGESPSLDTMKAFFDGLFFEKERYDLSTVGRIKLNDHL 432 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD +DV + K+DII +IK LV LR+G+G +DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 433 GLDISEDVTVLTKDDIIHVIKKLVLLRDGEGFVDDIDHLGNRRVRSVGEFIENQFRIGIL 492 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ MP D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 493 RLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 552 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +AR+N +GFIE+ Sbjct: 553 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYARINKHGFIES 612 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV +G VT+ V YL AM+E N YIA A+++LDE+ F +++++CR G ++V RE+ Sbjct: 613 PYRKVDNGIVTDKVEYLLAMQESNYYIADASATLDENNRFVDDMLYCRHDGNFVMVKREQ 672 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D+ID SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLKA+AP VGTGMES+VA Sbjct: 673 VDYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKADAPLVGTGMESIVA 732 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG ++AKR+GIV +VD + IVIR+ + + + GVDIY L KFQRSN NTC+NQ+P Sbjct: 733 AGSGTVVLAKRSGIVHRVDGLYIVIRAFDKEKNEY-LGVDIYNLRKFQRSNHNTCINQKP 791 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVK GD VR ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V +DVFT Sbjct: 792 LVKPGDYVRENDVIADGSAIDQGELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKDVFT 851 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFE + RDT LGPE+I R IP+V+E+ L ++D+ GI+ VGAEV+ GDILVGK+TP Sbjct: 852 SIHIEEFECVVRDTALGPEKIMRSIPDVNEDSLSHLDDVGIVNVGAEVSAGDILVGKVTP 911 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 + + PE KLL IFGEK D D+SL +P V GTVVDV +F R G+++N+RS+ ++ Sbjct: 912 RPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPIDVEGTVVDVHVFVRRGVEENDRSLLIK 971 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +I +++D E ++ Y L +L N + + D + P+ Sbjct: 972 QNEINGFIKERDYEIDVVSEYFYDELKRVLVNTNTEYNNQNIE-------DYLKSIPQKS 1024 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW + DE V + LK ++++ +F KI+K+ +G D+P GVL +VKVFVA+ Sbjct: 1025 WWDIKLSDESVLSQISDLKEKFDSMIENAHSKFDQKIDKLNYGYDLPQGVLCIVKVFVAV 1084 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 K +Q GDKMAGRHGNKG++SRI+P EDMP+L+DGTPVDI+LN LGVPSRMNVGQI ETH Sbjct: 1085 KHNLQPGDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGVPSRMNVGQILETH 1144 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA V LGKKI +++ D I+ LR+FL++V I DD +L AE+ Sbjct: 1145 LGWASVNLGKKIGNIL-DNIDELTIAHLRNFLDQVYDGQDLKYSIRSMSDDDLLAFAERL 1203 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++ PVF+G + I+++L++ADLD SGQ LYDG GE FDR VTVGYIYMLKL+ Sbjct: 1204 RDGVPMAAPVFEGPKDNQISNLLKLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYMLKLH 1263 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSD Sbjct: 1264 HLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1323 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 D+VGR ++YESI+ G+ FE G PESFNV+VKE+++L L + L+ + + Sbjct: 1324 DIVGRVKIYESIIKGDSNFECGIPESFNVMVKELRSLCLDVALKQDKDFLHDRKIN 1379 >gi|88658392|ref|YP_507740.1| DNA-directed RNA polymerase subunit beta [Ehrlichia chaffeensis str. Arkansas] gi|97537056|sp|Q8KWX2|RPOB_EHRCR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|88599849|gb|ABD45318.1| DNA-directed RNA polymerase, beta subunit [Ehrlichia chaffeensis str. Arkansas] Length = 1380 Score = 1482 bits (3837), Expect = 0.0, Method: Composition-based stats. Identities = 695/1376 (50%), Positives = 966/1376 (70%), Gaps = 28/1376 (2%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + K+ +I D + DLI++Q+ SY+ F+ ++ + G++ F+S+FPI G A Sbjct: 20 RLSYAKSIDIKDSLTDLIKIQRDSYNAFIGID----QNTESGIKNIFQSMFPIQDLLGRA 75 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +LEFVSY P++D +C+ R +T++VP++I LR IV+ V DE T K Sbjct: 76 VLEFVSYSIGEPQYDEYECIKRGITFSVPIRIVLRFIVWKVQEVSFKEVKYVVDEETSEK 135 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIK IKEQ + +GDLP MT GTF+I GI+R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 136 SIKYIKEQEVSIGDLPTMTSHGTFIINGIERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 195 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KDI++ RIDR+RK+PV+ L ALG+ + +IL TFY KI Y + Sbjct: 196 SARIIPYRGSWLDFEFDIKDILYFRIDRKRKLPVSLLLRALGLSNNDILDTFYDKIRYVK 255 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W P A D G ++S L+D D G ++++ ++T + + L G+ + Sbjct: 256 SEKGWVVPFVA-DRFRGVRLSHDLMDSD-GNVLVKANTRITLRMARKLANDGLTKYLVPF 313 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + + GL++A D+++ + I AG+ I + + ++ I +I +L +D + YI N Sbjct: 314 NEIQGLFIANDLLDSTGNALIISAGENITSEHINKLELFNIEEIFVLNIDFLTVGPYILN 373 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN +DAL +IY+V+R G+ + ++ F+ LFF+ ++YDLSTVGR+K+N L Sbjct: 374 TLFLDKNVSYEDALFEIYKVLRSGESPSLDTIKAFFDGLFFEKERYDLSTVGRIKLNDHL 433 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 L+ +D+ + K+DII +IK LV LR+G+G++DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 434 GLNVSEDITVLTKDDIIHVIKKLVLLRDGEGSVDDIDHLGNRRVRSVGEFIENQFRIGIL 493 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ MP D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 494 RLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 553 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +AR+N +GFIE+ Sbjct: 554 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYARINKHGFIES 613 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV G VT+ V YL AM+E N YIA A+++LDE+ F +++++CR G ++V RE+ Sbjct: 614 PYRKVDKGVVTDKVEYLLAMQESNYYIADASATLDENNQFVDDMLYCRHDGNFVMVKREE 673 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D+ID SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLKA+AP +GTGMES+VA Sbjct: 674 VDYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKADAPLIGTGMESIVA 733 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG ++AKR GIV +VD + IVIR+ + + + GVDIY L KFQRSN NTC+NQRP Sbjct: 734 AGSGTVVLAKRGGIVHRVDGLYIVIRAFDQEKNEY-LGVDIYNLRKFQRSNHNTCINQRP 792 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVK GD V+ ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V +DVFT Sbjct: 793 LVKPGDYVKANDVIADGSAIDQGELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKDVFT 852 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFE + RDT LGPE+I R +P+++E+ L ++D+ GI+ VGAEV+ GDILVGK+TP Sbjct: 853 SIHIEEFECVVRDTTLGPEKIMRSVPDINEDSLSHLDDVGIVNVGAEVSAGDILVGKVTP 912 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 + + PE KLL IFGEK D D+SL +P V GTVVDV +F R G+++N+RS+ ++ Sbjct: 913 RPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPLDVEGTVVDVHVFVRRGVEENDRSLLIK 972 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +I +++D E ++ Y L +L G + + D ++ P+ + Sbjct: 973 QNEINGFIKERDYEIDVVSEYFYDELKRVLVSS-------GVQYNNQNIDDYLASIPKKE 1025 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW + DE + V+ LK ++++ +F KI+K+ +G D+P GVL +VKVFVA+ Sbjct: 1026 WWDINLSDEAMLLQVKDLKEKFDSMIQNAHSKFDQKIDKLNYGYDLPQGVLCIVKVFVAV 1085 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 K +Q GDKMAGRHGNKG++SRI+P EDMP+L+DGTPVDI+LN LGVPSRMNVGQI ETH Sbjct: 1086 KHNLQPGDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGVPSRMNVGQILETH 1145 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA V LGKKI ++ D +S LR+FL +V + I D+ +L AE+ Sbjct: 1146 LGWASVNLGKKIGHIL-DNLDELTVSHLRNFLYQVYDGQDLKDNIQSMSDEDLLVFAERL 1204 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++ PVF+G + I+++LR+ADLD SGQ LYDG GE FDR VTVGYIYMLKL+ Sbjct: 1205 RDGVPMAAPVFEGPKDSQISNLLRLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYMLKLH 1264 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSD Sbjct: 1265 HLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1324 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 D+VGR ++YESI+ G+ FE G PESFNV+VKE+++L L + L+ + S ++++ Sbjct: 1325 DIVGRVKIYESIIKGDSNFECGIPESFNVMVKELRSLCLDVALKQDKDFLSNEVKD 1380 >gi|73666802|ref|YP_302818.1| DNA-directed RNA polymerase subunit beta [Ehrlichia canis str. Jake] gi|88909136|sp|Q3YST5|RPOB_EHRCJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|72393943|gb|AAZ68220.1| DNA-directed RNA polymerase subunit beta [Ehrlichia canis str. Jake] Length = 1380 Score = 1482 bits (3836), Expect = 0.0, Method: Composition-based stats. Identities = 689/1376 (50%), Positives = 959/1376 (69%), Gaps = 28/1376 (2%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + K+ +I D + DLI++Q+ SY+ F+ + + G++ F+S+FPI G A Sbjct: 20 RLSYAKSIDIKDSLTDLIKIQRDSYNAFIGVG----QNTESGIKNIFESMFPIEDLLGRA 75 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +LEFVSY P++D +C+ R +T++VP++I LR IV+ V DE T K Sbjct: 76 VLEFVSYSIGEPQYDEYECIKRGITFSVPIRIVLRFIVWKVQEVSFKEVKYVVDEETSEK 135 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIK IKEQ + +GDLP MT GTF+I GI+R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 136 SIKYIKEQEVSIGDLPTMTPHGTFIINGIERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 195 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KDI++ RIDR+RK+PV+ L ALG+ + +IL+TFY KI Y + Sbjct: 196 SARIIPYRGSWLDFEFDIKDILYFRIDRKRKLPVSLLLRALGLSNNDILNTFYDKIRYVK 255 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W P D G ++S LVD+ G ++++ ++T + K L G+ + Sbjct: 256 CEKGWIVPFVV-DRFRGVRLSHDLVDV-NGNVLVKANTRITLRMAKKLANDGLTEYLVPF 313 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + GL++A D+ + + I AG+ I + + ++ +I++I +L +D + YI N Sbjct: 314 AEIQGLFIANDLFDPSGNALIISAGENITSEHINKLELFDIKEIFVLNIDFLTVGPYILN 373 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN +DAL +IY+V+R G+ + ++ F+ LFF+ ++YDLSTVGR+K+N L Sbjct: 374 TLFLDKNVTYEDALFEIYKVLRSGESPSLDTIKAFFDGLFFEKERYDLSTVGRIKLNDHL 433 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 L+ +D+ + K+DII +IK LV LR+G+G++DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 434 GLNVSEDITVLTKDDIIHVIKKLVLLRDGEGSVDDIDHLGNRRVRSVGEFIENQFRIGIL 493 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ MP D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 494 RLERMIMDYMSSVNFDNAMPCDFVNPKILATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 553 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +AR+N +GFIE+ Sbjct: 554 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYARINKHGFIES 613 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV G VT+ V YL AM+E N YIA A+++LDE+ F +++++CR G ++V RE+ Sbjct: 614 PYRKVDKGVVTDKVEYLLAMQESNYYIADASATLDENNQFVDDMLYCRHDGNFVMVKREE 673 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D+ID SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLKA+AP +GTGMES+VA Sbjct: 674 VDYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKADAPLIGTGMESIVA 733 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG ++AKR GIV +VD + IVIR+ + + + GVD+Y L KFQRSN NTC+NQRP Sbjct: 734 AGSGTVVLAKRGGIVHRVDGLYIVIRAFDQEKNEY-LGVDVYNLRKFQRSNHNTCINQRP 792 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVK GD V+ ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V +DVFT Sbjct: 793 LVKPGDYVKANDVIADGSAIDQGELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKDVFT 852 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFE + RDT LGPE+I R +P+++E+ L ++D+ GI+ +GAEV+ GDILVGK+TP Sbjct: 853 SIHIEEFECVVRDTTLGPEKIMRSVPDINEDSLSHLDDVGIVNIGAEVSAGDILVGKVTP 912 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 + + PE KLL IFGEK D D+SL +P V GTVVDV +F R G+++N+RS+ ++ Sbjct: 913 RPPISLPPETKLLVTIFGEKVFDCVDSSLYLPLDVEGTVVDVHVFVRRGVEENDRSLLIK 972 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +I +++D E ++ Y L +L + D + P+ Sbjct: 973 QNEINGFIKERDYEIDVVSEYFYDELKRVLVNSGVQCNNQNVN-------DYLESTPKKD 1025 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW + DE V + +L+ ++++ +F KI+K+ +G D+P GVL +VKVFVA+ Sbjct: 1026 WWNVNLSDETVLLQINNLREKFDSMIQNAHSKFDQKIDKLNYGYDLPQGVLCIVKVFVAV 1085 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 K +Q GDKM+GRHGNKG++SRI+P EDMP+L+DGTPVDI+LN LGVPSRMNVGQI ETH Sbjct: 1086 KHNLQPGDKMSGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGVPSRMNVGQILETH 1145 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 GWA V LGKKI ++ D IS LR+FL++V I D+ +L AE+ Sbjct: 1146 FGWASVNLGKKIGHIL-DNIDELTISHLRNFLDQVYDGQDLKYNIQSMSDEDLLAFAERL 1204 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++ PVF+G + I+++L++ADLD SGQ LYDG GE FDR VTVGYIYMLKL+ Sbjct: 1205 RGGVPMAAPVFEGPKDSQISNLLKLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYMLKLH 1264 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSD Sbjct: 1265 HLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1324 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 D+VGR ++YESI+ G+ FE G PESFNV+VKE+++L L + L+ + S+++ Sbjct: 1325 DIVGRVKIYESIIKGDSNFECGIPESFNVMVKELRSLCLDVALKQDKDFLSSEVNN 1380 >gi|302036657|ref|YP_003796979.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrospira defluvii] gi|300604721|emb|CBK41053.1| DNA-directed RNA polymerase, beta subunit [Candidatus Nitrospira defluvii] Length = 1319 Score = 1481 bits (3834), Expect = 0.0, Method: Composition-based stats. Identities = 694/1364 (50%), Positives = 939/1364 (68%), Gaps = 63/1364 (4%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 RK F + IDIPDLIE+QK SY+ FL M + PD R ++GLQAA SVFPIT ++ A Sbjct: 11 ERKDFSRIRTSIDIPDLIEIQKRSYEEFLQMEVEPDRRKDQGLQAALASVFPITDYNNTA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LEF +Y PK+D +CL + +T+AVPLK+ +RLIVFD ++ K + D++EQ +Y+ Sbjct: 71 ALEFSNYSLGTPKYDERECLEQGMTFAVPLKLRVRLIVFDKEDKGPKKKVLDVREQEVYV 130 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G+LPLMT+ GTF+I G +R+VVSQLHRSPG F HDKGR SGK+LY+ RIIP +G W+ Sbjct: 131 GELPLMTERGTFLINGTERVVVSQLHRSPGASFTHDKGRTHASGKVLYSARIIPYRGSWL 190 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D EFD++DI++VRIDRRRK+P T L A G ++++L +YP L Sbjct: 191 DFEFDARDILYVRIDRRRKMPATILLKAFGYSTDDLLRMYYPVEEIRVSKGKLYRKLDPE 250 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 + G K S+ +++ + ++ G KLT L+ LK G+K + +T L G V ++ Sbjct: 251 -IHHGLKCSTEVMEKGGKDPLVREGAKLTKVLIAKLKAAGIKEIPVTPAELVGRAVLTEL 309 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 V+ + E + E+ LE+I S+I + ++Y+D+ N I +TL ++ +++ Sbjct: 310 VDSGKKQSLAEKNQRLTEEILEKILDSDIEEFKVIYLDTTNATLVILDTLDMERTGSKEE 369 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 A+++IYR +RPG+ + A ++F+ LF +YDLS VGR+K+N +L LD + R + Sbjct: 370 AMVEIYRRLRPGETPSVETARALFDNLFLSPKRYDLSPVGRLKLNKKLGLDFALEQRTLT 429 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 +DI+ +++ LV+L+ G+G IDDID+LGNRRVRSVGE+L+NQ+RLGL+RMERSIKER++ Sbjct: 430 AQDIVEVVRYLVNLKIGRGEIDDIDHLGNRRVRSVGELLENQFRLGLVRMERSIKERMNL 489 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 +D+++V+P DLINAKPVV+AV EFF SSQLSQ + N L+ ITH RRLSALG GG+ R Sbjct: 490 LDMETVLPHDLINAKPVVAAVKEFFSSSQLSQFMDQTNPLAEITHKRRLSALGPGGLTRE 549 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVHP+HY RICP ET EG NIGL++SL ++AR+N +GFIE PYRKV G+V++ Sbjct: 550 RAGFEVRDVHPSHYSRICPIETPEGPNIGLITSLATYARINEFGFIEAPYRKVVKGRVSD 609 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 ++ YLSA+E + IAQANS +D G E V R AG+ I +KI+++D SPKQVV Sbjct: 610 ELEYLSAIEGDKYIIAQANSKVDTSGRLVSETVSARSAGDFITATPDKIEYMDVSPKQVV 669 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S+A +L+PFLE+DD+NR LMG NMQRQAVPLLKAE+P VGTGME+VVA+ SG + AKR Sbjct: 670 SVATALVPFLEHDDANRALMGSNMQRQAVPLLKAESPLVGTGMEAVVARDSGYVVQAKRE 729 Query: 733 GIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRN 791 G+VE VDA RIV+R+ + + SG+D+Y ++KFQRSNQNTC+ Q P+V++G+ V+R Sbjct: 730 GVVESVDATRIVVRADAKEGRKRNDSGLDVYEMIKFQRSNQNTCITQTPVVRIGEPVKRG 789 Query: 792 DIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMA 851 ++ADGP+ D G+LALG+N+LVAFMPW GYNFED++L+SE++V ED FTSIHIEEFEV A Sbjct: 790 QVLADGPAIDHGELALGKNVLVAFMPWGGYNFEDAILLSEKLVREDAFTSIHIEEFEVEA 849 Query: 852 RDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEK 911 RDTKLG E+ITRDIPNV EE L+++DE GII +GAEV PGDILVGK+TPKGE+ +TPEEK Sbjct: 850 RDTKLGKEDITRDIPNVGEEALRDLDESGIIRIGAEVKPGDILVGKVTPKGETQLTPEEK 909 Query: 912 LLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDK 971 LLRAIFGEKA DV+DTSL VP GV G VVDV+IF+R G+DK+ERS S+E E L RD Sbjct: 910 LLRAIFGEKAGDVKDTSLTVPPGVEGIVVDVKIFSRKGLDKDERSKSIESEDHMKLQRDH 969 Query: 972 DDEQVILDRNIYSRLMEILCGQNA-------VSGPKGFKKSTVLSSDLISEYPRSQWWQF 1024 +E I++ ++ ++L G+ +G KK L+++++ P Sbjct: 970 QEELRIIEDEKTKKVRKLLLGKVVGRDLMDPETGGVILKKKGKLTAEILKRLPDDMVRHI 1029 Query: 1025 AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPI 1084 + D Q+ +E ++ + + IL+ + K+ +++ GD++PPGV+++VKV++AMKR I Sbjct: 1030 ILSDPDEQKELEDVERRAKEQIEILQTLYDEKVGRLRRGDELPPGVIKLVKVYIAMKRKI 1089 Query: 1085 QSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWA 1144 Q GDKMAGRHGNKG+VSR+LP EDMP+L DGTPV+IVLNPLGVPSRMNVGQI ETHLGWA Sbjct: 1090 QVGDKMAGRHGNKGVVSRVLPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWA 1149 Query: 1145 CVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGV 1204 LG K+ S + D + +I L + Sbjct: 1150 ARALGIKVASPVFDGASEKEIKELLKKAKLSPSGQ------------------------- 1184 Query: 1205 PVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVS 1264 T + DG E+ F PVTVGY+Y+LKL+H+V Sbjct: 1185 ---TMLMDGRTGES--------------------------FSSPVTVGYMYVLKLHHLVD 1215 Query: 1265 DKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVG 1324 DK++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW +QAYGAA +LQE LT+KSDDV G Sbjct: 1216 DKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAASILQEFLTVKSDDVPG 1275 Query: 1325 RTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 R+R+YE+IV G E G PESFNVLVKE+Q+LGL ++L S+ Sbjct: 1276 RSRMYEAIVKGEPFLEPGLPESFNVLVKELQSLGLDVELVKSKD 1319 >gi|317052110|ref|YP_004113226.1| DNA-directed RNA polymerase subunit beta [Desulfurispirillum indicum S5] gi|316947194|gb|ADU66670.1| DNA-directed RNA polymerase, beta subunit [Desulfurispirillum indicum S5] Length = 1347 Score = 1481 bits (3833), Expect = 0.0, Method: Composition-based stats. Identities = 673/1384 (48%), Positives = 930/1384 (67%), Gaps = 64/1384 (4%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R R F + P I+DIPDL +QK SY FL M +R + GL+A F+SVFPI ++ Sbjct: 14 RKRHNFSRIPNILDIPDLNAIQKESYVKFLQMGKDFQQRSDMGLEAVFRSVFPIQDYNET 73 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFT--GAKSIKDIKEQS 129 A LE++SY PK++V++C R T+A P++I +RL++F+ + G + +KD+KEQ Sbjct: 74 AQLEYISYSLGEPKYNVNECQDRGATFAAPVRIKVRLVLFEREGSAAPGERPVKDVKEQE 133 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +Y+G+LPLMT GTF+I GI+R++VSQLHRSPG+ F+ D G+ + K++Y+ RIIP +G Sbjct: 134 VYLGELPLMTDKGTFIINGIERVIVSQLHRSPGVFFEDDGGKGGANAKVIYSARIIPYRG 193 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 WMD EFD+KDI++VRID++RK P T L ALG +ILS FY D L Sbjct: 194 SWMDFEFDAKDILYVRIDKKRKFPATVVLKALGYSERDILSHFYTNETIRVSEDGSVEKL 253 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLC--GLY 307 + + K+ ++ ++GE ++++G K+T G ++ L V+ + + + Y Sbjct: 254 TDLANLYNQKLMQDILHPESGEVLVKAGHKITRGNIRKLTNANVQSIRLDRMEVVRDTSY 313 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD-K 366 AEDI + +GE+ + + + + +R+ IL++D++ ++ IR+TL D K Sbjct: 314 FAEDIYDPSSGELLASINQPVTDDIYDLLLERGVREFAILFIDNIKSDTSIRDTLAADSK 373 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 ++AL++I+R MRPG+ T A +F+ LFF + +YDLS VGR+K+N RL L+ P Sbjct: 374 VTSAEEALIEIFRKMRPGEPPTVEAATQLFDNLFFVAKRYDLSRVGRLKINRRLGLEVPM 433 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 DV + +EDI+ ++K L D++NGKG++DDID+L NRR+RSVGE+L+NQ+R+GL+RMER++ Sbjct: 434 DVTTLTREDILQVVKTLSDIKNGKGSVDDIDHLSNRRIRSVGELLENQFRIGLVRMERTV 493 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 KER+S D+ + PQ+L+N+KP+V+++ EFF SSQLSQ + N L+ ITH RRLSALG Sbjct: 494 KERMSIQDLSELSPQELLNSKPIVASIKEFFGSSQLSQFMDQTNPLAEITHKRRLSALGP 553 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG+ R RAG E+RDVH THYGRICP ET EG NIGL++SL + R+N YGFIETPYRKV Sbjct: 554 GGLTRERAGFEVRDVHTTHYGRICPIETPEGPNIGLITSLATHGRINEYGFIETPYRKVE 613 Query: 607 DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 KVT + YLSA++E + IAQAN LD+ F ELV R GE ++ E I ++D Sbjct: 614 KKKVTTQIDYLSAIDEYGQIIAQANEPLDKGNCFVNELVSARDEGEFVMTEAENITYMDV 673 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 +P Q+VS+AA LIPFLENDD+NR LMG NMQRQAVPLL+ ++P VGTG+E VA SGAA Sbjct: 674 APVQMVSVAAGLIPFLENDDANRALMGSNMQRQAVPLLRTQSPLVGTGLERKVAVDSGAA 733 Query: 727 IVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGD 786 I A R G + V+A +I++ E ++ P VDIY L+KF+RSNQNTC+NQ P+V GD Sbjct: 734 ITATRGGTIVSVEADKIIVHVNESEIAPGEGRVDIYNLIKFRRSNQNTCINQTPIVFPGD 793 Query: 787 EVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEE 846 +V+ D+IADGP+T+ GDLALG+N++VAFMPW GYNFEDS+LISER+V EDV+TSIHIEE Sbjct: 794 QVKAGDVIADGPATESGDLALGKNVVVAFMPWMGYNFEDSILISERVVLEDVYTSIHIEE 853 Query: 847 FEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPM 906 F+V ARDTKLGPE+ITRDIPNV E+ LK+ID+ GII +GAEV GDI+VGK+TPKGE+ Sbjct: 854 FDVEARDTKLGPEDITRDIPNVGEDALKDIDDSGIIRIGAEVKAGDIMVGKVTPKGETQP 913 Query: 907 TPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 TPEEKLLRAIFGEKA + RD SL VP G+ GT+VDV++F R G +K++R +E E+I+ Sbjct: 914 TPEEKLLRAIFGEKAGEFRDASLTVPPGIEGTIVDVKVFTRRGTEKDDRVKDIEEEEIKK 973 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRSQW 1021 L D DE ++ + +++ +L G+ G ++ ++ +++ + ++ Sbjct: 974 LEVDYQDECTLIRKERLNKIRRLLVGKKLADDLVLRGKILGREGEAITMEMVEKLTLNEL 1033 Query: 1022 WQFAVQD-EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 + V+D E R ES++ E + + K ++ GDD+PPGV ++VKV+VA+ Sbjct: 1034 LETPVEDSEGFIRKAESIREIMEEQLEKTHEMYTEKKSRVNMGDDLPPGVFKMVKVYVAV 1093 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR ++ GDKMAGRHGNKG+VSRILP ED+P+L DGTPVDIVLNPLGVPSRMNVGQI ETH Sbjct: 1094 KRKLKVGDKMAGRHGNKGVVSRILPQEDLPYLPDGTPVDIVLNPLGVPSRMNVGQILETH 1153 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA LG + + + D GDI L Sbjct: 1154 LGWAAKALGMHVATNVFDGANEGDIKELLRK----------------------------- 1184 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 +DG +++GQ+ LYDG TGE FD+PVTVG IYMLKL+ Sbjct: 1185 ---------AYDG---------------NDTGQTDLYDGRTGEKFDQPVTVGVIYMLKLH 1220 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V K++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA++ LQE+LT+KSD Sbjct: 1221 HLVDTKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASHCLQELLTVKSD 1280 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DV GRT++YE+IV G +T G PESFNVLVKE+Q+L L ++L ++ + E + Sbjct: 1281 DVNGRTKMYEAIVKGENTLTPGLPESFNVLVKELQSLCLDVELISTDEAVEVEAGESSEV 1340 Query: 1381 NKCE 1384 E Sbjct: 1341 LTEE 1344 >gi|301168466|emb|CBW28056.1| DNA-directed RNA polymerase beta chain [Bacteriovorax marinus SJ] Length = 1348 Score = 1479 bits (3829), Expect = 0.0, Method: Composition-based stats. Identities = 664/1349 (49%), Positives = 923/1349 (68%), Gaps = 16/1349 (1%) Query: 32 VQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDC 91 +Q S++ FL ++ P +R GLQ F SVFPI F+ LEFVSY + PK+ V +C Sbjct: 3 LQLKSFEEFLQKDVPPAQRKMVGLQQVFHSVFPIHDFNKTVSLEFVSYTLEEPKYSVKEC 62 Query: 92 LWRDLTYAVPLKITLRLIVFDVDEFT---GAKSIKDIKEQSIYMGDLPLMTKDGTFVIKG 148 R L+Y PLK+ +RL+ ++V+ +++ IKEQ +Y+G++PLM + G+FV G Sbjct: 63 RQRGLSYEAPLKVVVRLVFYEVNVDKDGNEQRTVSSIKEQEVYLGNIPLMAETGSFVYNG 122 Query: 149 IQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDR 208 +R++VSQLHRSPGI F+HD G+ SGKLLY+ RIIP +G W+D EFD K+++ RIDR Sbjct: 123 TERVIVSQLHRSPGIIFEHDSGKKHSSGKLLYSARIIPHRGSWLDFEFDHKNVLFARIDR 182 Query: 209 RRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDID 268 +RK+ T L A+G + ++L FY + D LM+G + + ++D Sbjct: 183 KRKLHATVVLKAMGYSTTDLLEMFYEMETLNINKDATFTRELDFSLMIGTRALNDILDPS 242 Query: 269 TGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVI 328 +G+ +++ GKK T +K L E G+ + + + G AEDI + TGE+ A + + Sbjct: 243 SGKALVKKGKKFTKASVKKLNEAGITEISAELEEVIGKVAAEDIFDENTGEVLCLANEAL 302 Query: 329 DEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVST 388 E ++E+ + I + ++Y+D +N +RNTL+ DK R AL+ I+ +RPG+ T Sbjct: 303 SEAKIQELIAAGITKVKVIYIDMINFGDQVRNTLLLDKTDTRDTALIKIFERLRPGEPPT 362 Query: 389 FSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRN 448 AE +F+ LFF+ +KYDLS VGR+K+N + L+ P + + KEDII K LV+L N Sbjct: 363 VEAAEQLFDNLFFNEEKYDLSKVGRMKINYKFGLNVPVENTVLTKEDIIMTAKYLVELNN 422 Query: 449 GKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKP 508 GKG +DDID+LGNRRVR+VGE+L+NQ+R+GL+RMER++KER++ +I+++MP DL+N KP Sbjct: 423 GKGKVDDIDHLGNRRVRAVGELLENQFRVGLVRMERAVKERMAIQEIETMMPYDLVNQKP 482 Query: 509 VVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGR 568 V ++V EFF SSQLSQ + N LS +TH RRLSALG GG+ R RAG E+RDVH THYGR Sbjct: 483 VSASVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHSTHYGR 542 Query: 569 ICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIA 628 +CP ET EG NIGL++SL ++ARV+ YGFIETPY+ V + Y +A EEE + IA Sbjct: 543 MCPVETPEGPNIGLITSLATYARVSEYGFIETPYQTVNEDLSLGAAKYFTAFEEEGKVIA 602 Query: 629 QANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSN 688 Q +++ DG E V R AGE LVP ++++ +D SP+Q++SIA SLIPFLE+DD+N Sbjct: 603 QIDNNHIVDGKVDGEHVPSRAAGEFTLVPNDQVELMDVSPQQMISIATSLIPFLEHDDAN 662 Query: 689 RVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV 748 R LMG NM RQAVP+++ +AP VGTG+ES VA+ SGA + AK +G V VD+ RIVI+ Sbjct: 663 RALMGSNMMRQAVPVVRTDAPIVGTGIESTVARDSGAILFAKHSGRVIFVDSNRIVIQRD 722 Query: 749 EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALG 808 + D SGVDIY+L+K+QR+NQNTC NQ+ LVK GD V + +IADGP T LGDLALG Sbjct: 723 K--FDEGQSGVDIYKLVKYQRTNQNTCNNQKALVKEGDVVSKGMVIADGPGTHLGDLALG 780 Query: 809 RNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNV 868 +N+LVAFMPW GYN+EDS+LI+ER+++ DVFTS+HIE +EV ARDTKLG EEITRDIPNV Sbjct: 781 QNVLVAFMPWGGYNYEDSILINERLLARDVFTSVHIESYEVEARDTKLGKEEITRDIPNV 840 Query: 869 SEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTS 928 SEE LK++DE GII VGA + PGDILVGKITPKGE+ ++PEEKLL+AIFG+KA DV+DTS Sbjct: 841 SEEALKDLDEAGIIRVGAIIKPGDILVGKITPKGETQLSPEEKLLKAIFGDKAGDVKDTS 900 Query: 929 LRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLME 988 LR PS V GTV+D +++ R G++ RS + ++ L+ RD+ E + + ++ E Sbjct: 901 LRAPSSVRGTVIDAKVYTREGVELCARSKEIIEQETTLIRRDERIEIKAIQTSSILKIAE 960 Query: 989 ILCGQNAV-------SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQ 1041 +L G + K L+ ++++ P ++ ++ + Sbjct: 961 MLKGAKTTDRLVSEDGSSELLPKGAELTGEVLASIPFELIGYLPLE-PALEERLSEYFAD 1019 Query: 1042 YETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVS 1101 + + + ++I K GD++PPGV++ V ++VA+KR +Q GDKMAGRHGNKG++S Sbjct: 1020 VRNRINRVRQKANDEIAKHHRGDELPPGVIKKVTIYVAIKRKLQPGDKMAGRHGNKGVIS 1079 Query: 1102 RILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKA 1161 +LP EDMPFL DGTPV+IVLNPLGVPSRMN+GQ+ E HLGWA GLG+K+K+LI D Sbjct: 1080 NVLPQEDMPFLADGTPVEIVLNPLGVPSRMNIGQLLELHLGWAGRGLGEKMKALIED--- 1136 Query: 1162 NGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINS 1221 +++ ++ ++ K+ T + D V VA+Q +GV ST FDGA EE I Sbjct: 1137 QVEMAEIKDYIYKIYETEEVKNWLKKASDKEVRAVADQLATGVRFSTSAFDGAKEEKIRQ 1196 Query: 1222 MLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQ 1281 ML + DL+E+G++ L+DG+TG+ F VTVG +YMLKL+H+V +K++ARSTG YSLVTQQ Sbjct: 1197 MLALGDLEENGKTTLFDGITGDAFAEDVTVGAMYMLKLHHLVDEKLHARSTGPYSLVTQQ 1256 Query: 1282 PLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFET 1341 PLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDDV+GRTR+YESIV G E Sbjct: 1257 PLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEFLTVKSDDVIGRTRMYESIVKGEQVLEP 1316 Query: 1342 GTPESFNVLVKEMQALGLSIDLENSRTKN 1370 G PESFNVL++E+QAL L + L+ + + Sbjct: 1317 GLPESFNVLIRELQALCLDVKLDETTEEE 1345 >gi|88606872|ref|YP_505583.1| DNA-directed RNA polymerase subunit beta [Anaplasma phagocytophilum HZ] gi|115305556|sp|Q2GJ68|RPOB_ANAPZ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|88597935|gb|ABD43405.1| DNA-directed RNA polymerase, beta subunit [Anaplasma phagocytophilum HZ] Length = 1383 Score = 1477 bits (3824), Expect = 0.0, Method: Composition-based stats. Identities = 681/1376 (49%), Positives = 959/1376 (69%), Gaps = 27/1376 (1%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + ++ +I D + DLI +Q+ SYD F+ ++ G+Q+ F+S+FPI G A Sbjct: 21 RLSYARSIDIRDSLSDLIRIQRDSYDAFIGIDEGSSG----GIQSIFQSMFPIRDPLGRA 76 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +LEFVS P++D +C+ R +T++VP++ITLR +V+ V DE T + Sbjct: 77 VLEFVSCNIGEPQYDEYECIKRGITFSVPMRITLRFVVWKVQEVSFKEVKYVVDEGTLER 136 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+K +KEQ + +GDLP+MT GTF+I GI+R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 137 SVKYMKEQEVSIGDLPMMTSYGTFIINGIERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 196 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KDII+ RID++RK+PVT L ALGM + +IL TFY K++Y + Sbjct: 197 SARIIPYRGSWLDFEFDIKDIIYFRIDKKRKLPVTYLLKALGMSNNDILDTFYDKVLYVR 256 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W P D G ++S L+D+D G +I++ ++T + K L G++ + Sbjct: 257 SDKGWKVPFVV-DRFKGVRLSYDLMDVD-GNVLIKANTRITLRIAKKLYADGLREYLVPF 314 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + GL+VA D+V+ +G + + AG+ I + + ++ +I +I L +D + Y+ N Sbjct: 315 AGISGLFVATDLVDPASGAVIVSAGEAIAAEHIVKLELFDISEIAFLNIDFLTVGPYVLN 374 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D++ ++DAL +IYRV+R G+ +S F LFF+ D+YDLS VGR+K+N L Sbjct: 375 TLFLDRHITQEDALFEIYRVLRSGESPNLEAVKSFFKGLFFEPDRYDLSVVGRIKLNSHL 434 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD +++ + K+DI+ +IK LV L +G+G +DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 435 RLDIDENLTVLTKDDIVHVIKKLVLLPDGEGVVDDIDHLGNRRVRSVGEFIENQFRVGIL 494 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ +P D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 495 RLERMIMDYMSSVNFDNAVPCDFVNPKILATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 554 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +A++N YGFIE+ Sbjct: 555 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIES 614 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DG VT+ V YL A +E + YIA A ++LDE+ F +++++CR G ++V RE Sbjct: 615 PYRKVIDGVVTDSVEYLLATQESDYYIADAGAALDENNRFVDDMLYCRHGGNFVMVKRED 674 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +++ID SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLKAEAP VGTGMESVVA Sbjct: 675 VNYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKAEAPLVGTGMESVVA 734 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SGA ++AKR G+V +VD IVIR+ + + D GVDIY+L KFQRSN NTC+NQRP Sbjct: 735 AGSGAVVLAKRDGVVHRVDGSYIVIRAFDKNKDEY-LGVDIYKLRKFQRSNHNTCINQRP 793 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK+GD VR ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V DVFT Sbjct: 794 IVKIGDYVRTNDVIADGAAIDRGELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFT 853 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFE + RDT LGPE+I R +P+V+EE L ++D+ GI+ +GAEV+ G +LVGK+TP Sbjct: 854 SIHIEEFECVVRDTPLGPEKIMRSVPDVNEESLSHLDDVGIVNIGAEVSAGSVLVGKVTP 913 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 + + PE KLL IFGEK D D+SL +P V GTV+DV +F R G+++N+RS+ ++ Sbjct: 914 RPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPPDVEGTVIDVHVFVRRGVEENDRSLLIK 973 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + ++ +++D E ++ Y L ++LC + L++ Sbjct: 974 QSEVNSFRKERDYEIDVVSEYFYDELKKLLCSADLPLN------GHADVESLLAAKSLEA 1027 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W+ + + K+ V +K +++ + +F KI+K+ +G D+P GVL +VKVFVA+ Sbjct: 1028 LWEIGLSNPKISAKVADMKGKFDELITEAHSKFDQKIDKLNYGYDLPQGVLTIVKVFVAV 1087 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 K +Q GDKMAGRHGNKG++SRI+P EDMP L+DGTPVDI+LN LGVPSRMN+GQI ETH Sbjct: 1088 KHNLQPGDKMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLGVPSRMNIGQILETH 1147 Query: 1141 LGWACVGLGKKIKSLINDYKANGD-ISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LGWA V LG ++ +++ + G + +RSFL +V E ++ D+++L+ A + Sbjct: 1148 LGWAAVNLGHRVGRMLDSGEEEGPVVESIRSFLSEVYEGQKLKEDVASMSDEALLKFANR 1207 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + GVP++ PVF+G + I+ +L +AD+D SGQ LYDG +G+ FDR VTVGYIYMLKL Sbjct: 1208 LRRGVPMAAPVFEGPKDAQISRLLELADVDPSGQVDLYDGRSGQKFDRKVTVGYIYMLKL 1267 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KS Sbjct: 1268 HHLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKS 1327 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 DD+VGR R+YESI+ G+ FE G PESFNV+VKE+++L L + L+ + S+K+E Sbjct: 1328 DDIVGRVRIYESIIKGDSNFECGIPESFNVMVKELRSLCLDVVLKQDKEFTSSKVE 1383 >gi|116514968|ref|YP_802597.1| RNA polymerase, b subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285636|sp|Q058E5|RPOB_BUCCC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|116256822|gb|ABJ90504.1| RNA polymerase, b subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 1343 Score = 1471 bits (3809), Expect = 0.0, Method: Composition-based stats. Identities = 676/1364 (49%), Positives = 962/1364 (70%), Gaps = 21/1364 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+R+ FGK P+I+DIP L+ +Q S+ F+ P + +GL++AF+S+ Sbjct: 1 MIYSYTEKKRIRENFGKQPKILDIPYLLSIQIDSFKKFIE----PKKNNYQGLESAFQSI 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G A L++VSY FD+ + R TY+VPL++ L+LI+++ D + ++ Sbjct: 57 FPIRSYNGCAELQYVSYTLGKKLFDMYESKTRGTTYSVPLRVKLQLIIYEKD--SKNTNV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K IKEQ +YMG+LPLMT +GTF+I G +R+VVSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KHIKEQEVYMGELPLMTHNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKILYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D+EFD KD + +RIDRRRK+P T L AL +E+IL F+ ++ + Sbjct: 175 RIIPYRGSWLDVEFDPKDHLFIRIDRRRKIPATVLLHALNFSTEKILKIFFKHDIFYIKN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + ++ ++ I+ G+++T+ +K LK+K +K + I + Sbjct: 235 KNIYMYLIPKRL-KGEIIPFEII--KNKKRYIKKGERITTEHIKKLKKKKIKTIQIPEEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G ++++ + +T EI I++ + + +I + + +L+ ++++N AYI TL Sbjct: 292 LYGKTISKNYYHPKTKEILIKSNTTLTQDEFNKIKNFNNKKFYVLFTNNIDNGAYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D KDR AL++IY++MRPG+ T AE++FN LFF ++YDLS VGR+K N L Sbjct: 352 KIDTTKDRLTALIEIYKIMRPGEPPTKEAAENLFNNLFFSQERYDLSPVGRMKFNKSLKR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + KEDII +IK L++++NGKG IDDID+L NRRVRSVGEM++NQ+R+GL+R+ Sbjct: 412 KEKKGSGILNKEDIIDVIKKLINIKNGKGEIDDIDHLSNRRVRSVGEMVENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER+++ER+S D+D++MPQD+INAKP+ SA+ EFF SSQLSQ + N L+ ITH RR+S Sbjct: 472 ERAVRERLSLSDLDTLMPQDIINAKPISSAIKEFFGSSQLSQFMDQNNPLAEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGIGGLTRERAGFEVRDVHPTHYGRVCPVETPEGPNIGLINSLSIYARTNQYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +G VT + YLSA+EE N IAQAN+ +++ G F ++ V CR GE L +K++ Sbjct: 592 RKVKNGTVTTKIKYLSAIEEGNYIIAQANTKINKFGKFYKKFVTCRYNGEFGLFKNKKVN 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +Q+VS+ ASLIPFLE+DD+NR LMG NMQRQAVP +K+E P VGTGME VA Sbjct: 652 YMDISTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTIKSEKPLVGTGMERSVAID 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG I+AKR+G +E VDA RIV+R + + SG+DIY L K+ RSNQNTC+NQ P + Sbjct: 712 SGVTIIAKRSGKIEYVDASRIVVRIKDEKIRTYESGIDIYNLTKYSRSNQNTCINQIPCI 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + D +++ D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+LISE++ ED FT+I Sbjct: 772 NLNDSIKKGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILISEKVEREDKFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E + RDTKLG EEIT DIPN+ E L +D GII +GA+V+ GD+LVGK+TPKG Sbjct: 832 HIQELSCICRDTKLGIEEITSDIPNIGESALSKLDTSGIIYIGADVSSGDVLVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+G +GTV+DV+IF R G+ K++R+I +E Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTNGTVIDVQIFTRDGVKKDKRTIEIEEM 951 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ +D +E I + NI +R+ +IL K + ++ ++EY + Sbjct: 952 LLKKAKKDLTEELKIFELNIINRINKILL--------TLKTKINCIVANSLNEY----FK 999 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + +K+++ + +LK+QY+ + + + K K +KI GD++ PG+L++VK+F+A+KR Sbjct: 1000 KKIKYPKKIKKKIHTLKIQYKQLQKKFKKKIKEKTKKIIQGDELAPGILKIVKIFLAVKR 1059 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG+VS+I P EDMP+ +G P+DIVLNPLGVPSRMN+GQI ETHLG Sbjct: 1060 KIQPGDKMAGRHGNKGVVSKINPVEDMPYDNNGEPIDIVLNPLGVPSRMNLGQILETHLG 1119 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A G+G I ++ K I + + + + ++ D +L++A+ + Sbjct: 1120 LAAKGIGNIINRMLKTNKKIYKIRKFLQKVYNLGENINQKINLDNFSDIEILQLAKNLRI 1179 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+P++TPVFDG +E+ I +L+M++ SGQ L+DG TGE F+R VTVGY+YMLKLNH+ Sbjct: 1180 GLPIATPVFDGVNEKEIKKLLKMSNFSTSGQITLFDGRTGEKFERNVTVGYMYMLKLNHL 1239 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTGSYSL+TQQPLGGK+ GGQR GEMEVW ++AYGA++ LQEMLT+KSDDV Sbjct: 1240 VDDKMHARSTGSYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASHTLQEMLTVKSDDV 1299 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GRT++Y++IV+G E G PESFNVLVKE+++LG++I+L N+ Sbjct: 1300 TGRTKMYKNIVSGKHNMEPGMPESFNVLVKEIRSLGINIELNNN 1343 >gi|254994766|ref|ZP_05276956.1| DNA-directed RNA polymerase subunit beta [Anaplasma marginale str. Mississippi] Length = 1382 Score = 1469 bits (3804), Expect = 0.0, Method: Composition-based stats. Identities = 674/1375 (49%), Positives = 953/1375 (69%), Gaps = 27/1375 (1%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + K+ +I D + DLI +Q+ SYD F+ ++ G+Q+ F+++FPI G A Sbjct: 22 RLSYAKSIDIRDSLTDLIRIQRDSYDAFIGIDRDGSS----GIQSIFEAMFPIRDLLGRA 77 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +LEFV Y P++D +C+ R +T++VP++ITLR +V+ V DE T + Sbjct: 78 VLEFVGYNIGEPQYDEYECIKRGITFSVPIRITLRFVVWKVQEVSFKEVKYVVDEDTSER 137 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+K +KEQ + +GDLP+MT GTF+I GI+R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 138 SVKYMKEQEVSIGDLPMMTSYGTFIINGIERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 197 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + R+IP +G W+D EFD KDII+ RID++RK+PV+ L ALGM + +IL FY K++Y++ Sbjct: 198 SARVIPYRGSWLDFEFDIKDIIYFRIDKKRKLPVSYLLKALGMSNNDILDAFYDKVIYTR 257 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W P + D G ++S L+D+D G ++++ ++T + K L G++ + Sbjct: 258 CDKGWRVPFTV-DRFKGVRLSYDLMDVD-GSVLVKANTRITLRIAKKLYADGLREYMVPF 315 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + G++VA D+V+ +G + + AG+ I + + ++ +I +I L +D + Y+ N Sbjct: 316 SGITGMFVAADLVDPSSGAVIVSAGETITSEHIVKLELFDISEIAFLNIDFLTVGPYVLN 375 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN ++DAL +IYRV+R G+ +S F LFF+S++YDLS VGR+K+N L Sbjct: 376 TLFLDKNMTQEDALFEIYRVLRSGESPNLDAVKSFFKGLFFESERYDLSVVGRIKLNSHL 435 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD ++ + KEDI+ ++K LV LR+G+G +DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 436 GLDVDENTTVLTKEDIVQVVKKLVLLRDGEGVVDDIDHLGNRRVRSVGEFIENQFRIGIL 495 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ MP D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 496 RLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 555 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +A++N YGFIE+ Sbjct: 556 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIES 615 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV + VT+ V YL AM+E + YIA A +++DE+ F +++++CR G ++V E Sbjct: 616 PYRKVENRVVTDKVEYLLAMQEGDYYIADAGAAIDENNRFVDDMLYCRHGGNFVMVKSED 675 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLK+EAP VGTGME VVA Sbjct: 676 VDYVDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKSEAPLVGTGMEFVVA 735 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SGA ++AKR GIV +VD IVIR+ + + D GVDIYRL KFQRSN NTC+NQRP Sbjct: 736 AGSGAVVLAKRDGIVHRVDGSYIVIRAFDANKDEC-LGVDIYRLRKFQRSNHNTCINQRP 794 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK+GD V+ ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V DVFT Sbjct: 795 VVKLGDYVKANDVIADGSAIDRGELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFT 854 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFE + RDT LGPE+I R +P+V+EE L ++D+ GI+ +GAEV+ ILVGK+TP Sbjct: 855 SIHIEEFECVVRDTPLGPEKIMRSVPDVNEESLSHLDDVGIVNIGAEVSASSILVGKVTP 914 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 + + PE KLL IFGEK D D+SL +P V GTV+DV +F R G+++N+RS+ ++ Sbjct: 915 RPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPPDVEGTVIDVHVFVRRGVEENDRSLLIK 974 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +I +++D E ++ + L ++L K +E Sbjct: 975 QSEISSFVKERDYEIDVVSEYFHDELRKLLRNAGVKV------KGYSDLDSFFAEASDDT 1028 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W + D KV V+ ++ ++++ +F+ K++K+ +G D+P GVL +VKVFVA+ Sbjct: 1029 LWSTGLADAKVAAKVKDMRERFDSIVGEAHRKFEQKVDKLNYGYDLPQGVLTIVKVFVAV 1088 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 K +Q GDKMAGRHGNKG++SRI+P EDMP L+DGTPVDI+LN LGVPSRMN+GQI ETH Sbjct: 1089 KHNLQPGDKMAGRHGNKGVISRIVPAEDMPHLEDGTPVDIILNSLGVPSRMNIGQILETH 1148 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA V LGKKI +++ I+ LR FL+K+ I+ +++L A + Sbjct: 1149 LGWAAVNLGKKIGRILDKGGP-SMIADLRDFLDKIYDGQKLKSDIASMSSEALLVFANRL 1207 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++ PVF+G + I+ +L +A++D SGQ LYDG G+ FDR +TVGYIYMLKL+ Sbjct: 1208 RKGVPMAAPVFEGPKDAQISKLLELAEVDPSGQVYLYDGRLGKKFDRKITVGYIYMLKLH 1267 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSD Sbjct: 1268 HLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1327 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 D+VGR ++YESI+ G+ FE G PESFNV+VKE+++L L++ L+ + S ++E Sbjct: 1328 DIVGRVKIYESIIKGDSNFECGIPESFNVMVKELRSLCLNVVLKQDKEFTSGEVE 1382 >gi|255002887|ref|ZP_05277851.1| DNA-directed RNA polymerase subunit beta [Anaplasma marginale str. Puerto Rico] gi|255004018|ref|ZP_05278819.1| DNA-directed RNA polymerase subunit beta [Anaplasma marginale str. Virginia] gi|229462746|sp|Q8KWX4|RPOB_ANAMF RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1382 Score = 1469 bits (3804), Expect = 0.0, Method: Composition-based stats. Identities = 674/1375 (49%), Positives = 952/1375 (69%), Gaps = 27/1375 (1%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + K+ +I D + DLI +Q+ SYD F+ ++ G+Q+ F+++FPI G A Sbjct: 22 RLSYAKSIDIRDSLTDLIRIQRDSYDAFIGIDRDGSS----GIQSIFEAMFPIRDLLGRA 77 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +LEFV Y P++D +C+ R +T++VP++ITLR +V+ V DE T + Sbjct: 78 VLEFVGYNIGEPQYDEYECIKRGITFSVPIRITLRFVVWKVQEVSFKEVKYVVDEDTSER 137 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+K +KEQ + +GDLP+MT GTF+I GI+R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 138 SVKYMKEQEVSIGDLPMMTSYGTFIINGIERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 197 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + R+IP +G W+D EFD KDII+ RID++RK+PV+ L ALGM + +IL FY K++Y++ Sbjct: 198 SARVIPYRGSWLDFEFDIKDIIYFRIDKKRKLPVSYLLKALGMSNNDILDAFYDKVIYTR 257 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W P D G ++S L+D+D G ++++ ++T + K L G++ + Sbjct: 258 CDKGWRVPFIV-DRFKGVRLSYDLMDVD-GSVLVKANTRITLRIAKKLYADGLREYMVPF 315 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + G++VA D+V+ +G + + AG+ I + + ++ +I +I L +D + Y+ N Sbjct: 316 SGITGMFVAADLVDPSSGAVIVSAGETITSEHIVKLELFDISEIAFLNIDFLTVGPYVLN 375 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN ++DAL +IYRV+R G+ +S F LFF+S++YDLS VGR+K+N L Sbjct: 376 TLFLDKNMTQEDALFEIYRVLRSGESPNLDAVKSFFKGLFFESERYDLSVVGRIKLNSHL 435 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD ++ + KEDI+ ++K LV LR+G+G +DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 436 GLDVDENTTVLTKEDIVQVVKKLVLLRDGEGVVDDIDHLGNRRVRSVGEFIENQFRIGIL 495 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ MP D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 496 RLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 555 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +A++N YGFIE+ Sbjct: 556 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIES 615 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV + VT+ V YL AM+E + YIA A +++DE+ F +++++CR G ++V E Sbjct: 616 PYRKVENRVVTDKVEYLLAMQEGDYYIADAGAAIDENNRFVDDMLYCRHGGNFVMVKSED 675 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLK+EAP VGTGME VVA Sbjct: 676 VDYVDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKSEAPLVGTGMEFVVA 735 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SGA ++AKR GIV +VD IVIR+ + + D GVDIYRL KFQRSN NTC+NQRP Sbjct: 736 AGSGAVVLAKRDGIVHRVDGSYIVIRAFDANKDEC-LGVDIYRLRKFQRSNHNTCINQRP 794 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK+GD V+ ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V DVFT Sbjct: 795 VVKLGDYVKANDVIADGSAIDRGELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFT 854 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFE + RDT LGPE+I R +P+V+EE L ++D+ GI+ +GAEV+ ILVGK+TP Sbjct: 855 SIHIEEFECVVRDTPLGPEKIMRSVPDVNEESLSHLDDVGIVNIGAEVSASSILVGKVTP 914 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 + + PE KLL IFGEK D D+SL +P V GTV+DV +F R G+++N+RS+ ++ Sbjct: 915 RPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPPDVEGTVIDVHVFVRRGVEENDRSLLIK 974 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +I +++D E ++ + L ++L K +E Sbjct: 975 QSEISSFVKERDYEIDVVSEYFHDELRKLLRNAGVKV------KGYSDLDSFFAEASDDT 1028 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W + D KV V+ ++ ++++ +F+ K++K+ +G D+P GVL +VKVFVA+ Sbjct: 1029 LWSTGLADAKVAAKVKDMRERFDSIVGEAHRKFEQKVDKLNYGYDLPQGVLTIVKVFVAV 1088 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 K +Q GDKMAGRHGNKG++SRI+P EDMP L+DGTPVDI+LN LGVPSRMN+GQI ETH Sbjct: 1089 KHNLQPGDKMAGRHGNKGVISRIVPAEDMPHLEDGTPVDIILNSLGVPSRMNIGQILETH 1148 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA V LGKKI +++ I+ LR FL+K+ I+ +++L A + Sbjct: 1149 LGWAAVNLGKKIGRILDKGGP-SMIADLRDFLDKIYDGQKLKSDIASMSSEALLVFANRL 1207 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++ PVF+G + I+ +L +A++D SGQ LYDG G+ FDR +TVGYIYMLKL+ Sbjct: 1208 RKGVPMAAPVFEGPKDAQISKLLELAEVDPSGQVYLYDGRLGKKFDRKITVGYIYMLKLH 1267 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSD Sbjct: 1268 HLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1327 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 D+VGR ++YESI+ G+ FE G PESFNV+VKE+++L L++ L+ + S ++E Sbjct: 1328 DIVGRVKIYESIIKGDSNFECGIPESFNVMVKELRSLCLNVVLKQDKEFTSGEVE 1382 >gi|114778903|ref|ZP_01453700.1| DNA-directed RNA polymerase beta subunit [Mariprofundus ferrooxydans PV-1] gi|114550872|gb|EAU53438.1| DNA-directed RNA polymerase beta subunit [Mariprofundus ferrooxydans PV-1] Length = 1339 Score = 1469 bits (3803), Expect = 0.0, Method: Composition-based stats. Identities = 696/1349 (51%), Positives = 963/1349 (71%), Gaps = 16/1349 (1%) Query: 30 IEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVD 89 +++Q SY F+ + + L F++VFP+ ++G A L F E+ PP++D D Sbjct: 2 LQLQTESYHEFVGYG---EAVNDSRLSTVFQTVFPVRDYAGNAELSFEGLEYSPPRYDQD 58 Query: 90 DCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSIYMGDLPLMTKDGTFVIKG 148 +C RDLT+A+P+K+ LRL +++ + AK +K++++QS+YMG++P MT+ G+F+I G Sbjct: 59 ECRRRDLTFALPVKVKLRLKIYEPEVERRAKRKVKEVRDQSVYMGEIPYMTEYGSFIING 118 Query: 149 IQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDR 208 +R +VSQ+HRSPG+ FDHDKG+ SGK L+ R+IP +G W+D EFDSKD +H RID Sbjct: 119 TERAIVSQMHRSPGVFFDHDKGKTHSSGKFLFKARVIPYRGSWLDFEFDSKDKVHFRIDL 178 Query: 209 RRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDID 268 RRK+P L ALG+ +++IL FY + Y A L+ V++ +D Sbjct: 179 RRKMPAGVLLKALGLSTQDILDRFYQRRTYRFTKSGVQVKFDADKLLGTRAVTAVKLDNK 238 Query: 269 TGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVI 328 T ++ GKK T+ ++ L E VK++ + + + G AE I+ + GEI I+ + Sbjct: 239 T---IVAEGKKFTALAIRRLTEADVKWIDVPIESMVGEVAAEPIM-IDGGEILIDHNQEL 294 Query: 329 DEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVST 388 E S+ + + I+ + L +DS ++ +TL D + R++A ++IYR+MRPG+ T Sbjct: 295 TEDSISALQGAGIKQLECLLIDSSVRGPWLADTLRLDMVQSREEARVEIYRMMRPGEPPT 354 Query: 389 FSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL---NLDTPDDVRHIRKEDIIAIIKILVD 445 A+++F LF+D+ +YDLS VGR+K+N RL ++D P D +R EDI+ + L+ Sbjct: 355 VETAKALFESLFYDASRYDLSRVGRMKLNSRLGISDVDVPLDHGTLRNEDILIALDTLLS 414 Query: 446 LRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLIN 505 LR+G G +DDID+LGNRR+RSVGE+L+NQ R+GL+RMER+I+ER++S D+ +MP D++N Sbjct: 415 LRDGIGEVDDIDHLGNRRLRSVGELLENQIRIGLVRMERAIRERLTSGDLTEMMPSDVVN 474 Query: 506 AKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTH 565 AKP++++V EFF SSQLSQ + N LS +TH RRLSALG GG++R RAG E+RDVHPTH Sbjct: 475 AKPLIASVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLSRERAGFEVRDVHPTH 534 Query: 566 YGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENR 625 YGR+CP ET EG NIGL++SL ++A+VN +GFIE+PYRKV DGK T+ V YLSA++E + Sbjct: 535 YGRLCPIETPEGPNIGLINSLATYAKVNDFGFIESPYRKVIDGKATDIVDYLSAIDESDP 594 Query: 626 YIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLEND 685 IAQAN+ LD++G F +LV CR GE I+ R+KI+++D SP QVVS+ A LIPFLE+D Sbjct: 595 IIAQANAVLDDEGRFAADLVQCRQGGEFIMAARDKINYMDVSPSQVVSVCAGLIPFLEHD 654 Query: 686 DSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVI 745 D+NR LMG NMQRQAVPLL++E P VGTGME+ +A+ SG + VA+R G +E+VD RIV+ Sbjct: 655 DANRALMGSNMQRQAVPLLRSEKPLVGTGMEAPLARDSGVSQVARRGGFIERVDGERIVV 714 Query: 746 RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDL 805 R E + GVDIYRL K++RSNQNTC NQRPLVK+GD+V + DIIADGPSTD+G+L Sbjct: 715 RVGEDEQVEGEPGVDIYRLFKYRRSNQNTCFNQRPLVKMGDKVVKGDIIADGPSTDMGEL 774 Query: 806 ALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDI 865 ALGRN+LVA MPW GYNFED+++ISE++V EDV+TSIHIEEFE ++RDTKLG EEITRDI Sbjct: 775 ALGRNVLVALMPWRGYNFEDAIVISEKLVREDVYTSIHIEEFECVSRDTKLGSEEITRDI 834 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 PNV E+ L+++D+CGI VGAEV GDILVGKITPKGES ++PEEKLLRAIFGEKA DVR Sbjct: 835 PNVGEDALRHLDDCGIAYVGAEVKQGDILVGKITPKGESQLSPEEKLLRAIFGEKASDVR 894 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSR 985 DTS+RV G G VVDV+IF R G +K+ER+ ++E IE L DK++E+ IL+ N SR Sbjct: 895 DTSMRVKPGEEGVVVDVQIFTRRGDEKDERAKAIEESGIEQLYADKEEERRILEGNAASR 954 Query: 986 LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 L ++ GQ A + KG + +++ + +V D+ V + + + Sbjct: 955 LCSLVVGQKAAT-FKGLNRGVTITAADVESMSLRDLSGVSVDDDAVNEKIAEILESMDKE 1013 Query: 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILP 1105 +S LE RF+ K+ K++ G ++ PGV++VVKVFVA+KR +Q GDKMAGRHGNKG++S I+P Sbjct: 1014 RSRLESRFEQKVAKVREGSELKPGVIKVVKVFVAVKRKLQPGDKMAGRHGNKGVISIIVP 1073 Query: 1106 CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI 1165 EDMP+ DGTPV+I LNPLGVPSRMN+GQIFE H+GWA LGK+I+ +A Sbjct: 1074 EEDMPYTADGTPVEICLNPLGVPSRMNIGQIFEIHMGWAGSELGKRIEE---KMRAKVGN 1130 Query: 1166 SPLRSFLEKVIGTGSHT-EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLR 1224 +RSFL + +I + +D ++ ++ K GVP++TPVFDGA+E I ML+ Sbjct: 1131 EEMRSFLLDIYAEDKTACRQIGEMNDAELVELSTNLKGGVPIATPVFDGANEAHIRRMLK 1190 Query: 1225 MADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLG 1284 +A L E+GQ+ILYDG TGE FDRPVT+G +Y+LKL+H+V +K++ARSTG YSLVTQQPLG Sbjct: 1191 LAGLPETGQTILYDGRTGEAFDRPVTIGQMYILKLHHLVDEKIHARSTGPYSLVTQQPLG 1250 Query: 1285 GKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTP 1344 GK+ GGQR GEMEVW ++AYGAA+VLQEMLT+KSDDV GRT++YESIV G+ +F+ G P Sbjct: 1251 GKAQFGGQRFGEMEVWALEAYGAAHVLQEMLTVKSDDVQGRTKMYESIVRGDMSFDAGIP 1310 Query: 1345 ESFNVLVKEMQALGLSIDLENSRTKNSAK 1373 ESFNV+ KE+ ALG+ + + T+N + Sbjct: 1311 ESFNVMTKELNALGIDLAMVKRPTENEGE 1339 >gi|56416546|ref|YP_153620.1| DNA-directed RNA polymerase subunit beta [Anaplasma marginale str. St. Maries] gi|81359248|sp|Q5PBG4|RPOB_ANAMM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|56387778|gb|AAV86365.1| RNA polymerase beta subunit [Anaplasma marginale str. St. Maries] Length = 1382 Score = 1469 bits (3803), Expect = 0.0, Method: Composition-based stats. Identities = 673/1375 (48%), Positives = 952/1375 (69%), Gaps = 27/1375 (1%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + K+ +I D + DLI +Q+ SYD F+ ++ G+Q+ F+++FPI G A Sbjct: 22 RLSYAKSIDIRDSLTDLIRIQRDSYDAFIGIDRDGSS----GIQSIFEAMFPIRDLLGRA 77 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +LEFV Y P++D +C+ R +T++VP++ITLR +V+ V DE T + Sbjct: 78 VLEFVGYNIGEPQYDEYECIKRGITFSVPIRITLRFVVWKVQEVSFKEVKYVVDEDTSER 137 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+K +KEQ + +GDLP+MT GTF+I GI+R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 138 SVKYMKEQEVSIGDLPMMTSYGTFIINGIERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 197 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + R+IP +G W+D EFD KDII+ RID++RK+PV+ L ALGM + +IL FY K++Y++ Sbjct: 198 SARVIPYRGSWLDFEFDIKDIIYFRIDKKRKLPVSYLLKALGMSNNDILDAFYDKVIYTR 257 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W P D G ++S L+D+D G ++++ ++T + K L G++ + Sbjct: 258 CDKGWRVPFIV-DRFKGVRLSYDLMDVD-GSVLVKANTRITLRIAKKLYADGLREYMVPF 315 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + G++VA D+V+ +G + + AG+ I + + ++ +I +I L +D + Y+ N Sbjct: 316 SGITGMFVAADLVDPSSGAVIVSAGETITSEHIVKLELFDISEIAFLNIDFLTVGPYVLN 375 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN ++DAL +IYRV+R G+ +S F LFF+S++YDLS VGR+K+N L Sbjct: 376 TLFLDKNMTQEDALFEIYRVLRSGESPNLDAVKSFFKGLFFESERYDLSVVGRIKLNSHL 435 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD ++ + KEDI+ ++K LV LR+G+G +DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 436 GLDVDENTTVLTKEDIVQVVKKLVLLRDGEGVVDDIDHLGNRRVRSVGEFIENQFRIGIL 495 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ MP D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 496 RLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 555 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +A++N YGFIE+ Sbjct: 556 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIES 615 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV + VT+ V YL AM+E + YIA A +++DE+ F +++++CR G ++V E Sbjct: 616 PYRKVENRVVTDKVEYLLAMQEGDYYIADAGAAIDENNRFVDDMLYCRHGGNFVMVKSED 675 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLK+EAP VGTGME VVA Sbjct: 676 VDYVDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKSEAPLVGTGMEFVVA 735 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SGA ++AKR GIV +VD IVIR+ + + D GVDIYRL KFQRSN NTC+NQRP Sbjct: 736 AGSGAVVLAKRDGIVHRVDGSYIVIRAFDANKDEC-LGVDIYRLRKFQRSNHNTCINQRP 794 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK+GD V+ ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V DVFT Sbjct: 795 VVKLGDYVKANDVIADGSAIDRGELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFT 854 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFE + RDT LGPE+I R +P+V+EE L ++D+ GI+ +GAEV+ ILVGK+TP Sbjct: 855 SIHIEEFECVVRDTPLGPEKIMRSVPDVNEESLSHLDDVGIVNIGAEVSASSILVGKVTP 914 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 + + PE KLL IFGEK D D+SL +P V GTV+DV +F R G+++N+RS+ ++ Sbjct: 915 RPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPPDVEGTVIDVHVFVRRGVEENDRSLLIK 974 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +I +++D E ++ + L ++L K +E Sbjct: 975 QSEISSFVKERDYEIDVVSEYFHDELRKLLRNAGVKV------KGYSDLDSFFAEASDDT 1028 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W + D KV V+ ++ ++++ +F+ K++K+ +G D+P GVL +VKVFVA+ Sbjct: 1029 LWSTGLADAKVAAKVKDMRERFDSIVGEAHRKFEQKVDKLNYGYDLPQGVLTIVKVFVAV 1088 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 K +Q GDKMAGRHGNKG++SRI+P EDMP L+DGTPVDI+LN LGVPSRMN+GQI ETH Sbjct: 1089 KHNLQPGDKMAGRHGNKGVISRIVPAEDMPHLEDGTPVDIILNSLGVPSRMNIGQILETH 1148 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA V LGKKI +++ I+ LR FL+K+ I+ +++L A + Sbjct: 1149 LGWAAVNLGKKIGRILDKGGP-SMIADLRDFLDKIYDGQKLKSDIASMSSEALLVFANRL 1207 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++ PVF+G + I+ +L +A++D SGQ LYDG G+ FDR +TVGYIYMLKL+ Sbjct: 1208 RKGVPMAAPVFEGPKDAQISKLLELAEVDPSGQVYLYDGRLGKKFDRKITVGYIYMLKLH 1267 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSD Sbjct: 1268 HLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1327 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 D+VGR ++YESI+ G+ FE G PESFNV++KE+++L L++ L+ + S ++E Sbjct: 1328 DIVGRVKIYESIIKGDSNFECGIPESFNVMIKELRSLCLNVVLKQDKEFTSGEVE 1382 >gi|222474914|ref|YP_002563329.1| RNA polymerase beta subunit (rpoB) [Anaplasma marginale str. Florida] gi|222419050|gb|ACM49073.1| RNA polymerase beta subunit (rpoB) [Anaplasma marginale str. Florida] Length = 1386 Score = 1469 bits (3802), Expect = 0.0, Method: Composition-based stats. Identities = 674/1375 (49%), Positives = 952/1375 (69%), Gaps = 27/1375 (1%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + K+ +I D + DLI +Q+ SYD F+ ++ G+Q+ F+++FPI G A Sbjct: 26 RLSYAKSIDIRDSLTDLIRIQRDSYDAFIGIDRDGSS----GIQSIFEAMFPIRDLLGRA 81 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +LEFV Y P++D +C+ R +T++VP++ITLR +V+ V DE T + Sbjct: 82 VLEFVGYNIGEPQYDEYECIKRGITFSVPIRITLRFVVWKVQEVSFKEVKYVVDEDTSER 141 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+K +KEQ + +GDLP+MT GTF+I GI+R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 142 SVKYMKEQEVSIGDLPMMTSYGTFIINGIERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 201 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + R+IP +G W+D EFD KDII+ RID++RK+PV+ L ALGM + +IL FY K++Y++ Sbjct: 202 SARVIPYRGSWLDFEFDIKDIIYFRIDKKRKLPVSYLLKALGMSNNDILDAFYDKVIYTR 261 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W P D G ++S L+D+D G ++++ ++T + K L G++ + Sbjct: 262 CDKGWRVPFIV-DRFKGVRLSYDLMDVD-GSVLVKANTRITLRIAKKLYADGLREYMVPF 319 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + G++VA D+V+ +G + + AG+ I + + ++ +I +I L +D + Y+ N Sbjct: 320 SGITGMFVAADLVDPSSGAVIVSAGETITSEHIVKLELFDISEIAFLNIDFLTVGPYVLN 379 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN ++DAL +IYRV+R G+ +S F LFF+S++YDLS VGR+K+N L Sbjct: 380 TLFLDKNMTQEDALFEIYRVLRSGESPNLDAVKSFFKGLFFESERYDLSVVGRIKLNSHL 439 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD ++ + KEDI+ ++K LV LR+G+G +DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 440 GLDVDENTTVLTKEDIVQVVKKLVLLRDGEGVVDDIDHLGNRRVRSVGEFIENQFRIGIL 499 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ MP D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 500 RLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 559 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +A++N YGFIE+ Sbjct: 560 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIES 619 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV + VT+ V YL AM+E + YIA A +++DE+ F +++++CR G ++V E Sbjct: 620 PYRKVENRVVTDKVEYLLAMQEGDYYIADAGAAIDENNRFVDDMLYCRHGGNFVMVKSED 679 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLK+EAP VGTGME VVA Sbjct: 680 VDYVDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKSEAPLVGTGMEFVVA 739 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SGA ++AKR GIV +VD IVIR+ + + D GVDIYRL KFQRSN NTC+NQRP Sbjct: 740 AGSGAVVLAKRDGIVHRVDGSYIVIRAFDANKDEC-LGVDIYRLRKFQRSNHNTCINQRP 798 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK+GD V+ ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V DVFT Sbjct: 799 VVKLGDYVKANDVIADGSAIDRGELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFT 858 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFE + RDT LGPE+I R +P+V+EE L ++D+ GI+ +GAEV+ ILVGK+TP Sbjct: 859 SIHIEEFECVVRDTPLGPEKIMRSVPDVNEESLSHLDDVGIVNIGAEVSASSILVGKVTP 918 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 + + PE KLL IFGEK D D+SL +P V GTV+DV +F R G+++N+RS+ ++ Sbjct: 919 RPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPPDVEGTVIDVHVFVRRGVEENDRSLLIK 978 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +I +++D E ++ + L ++L K +E Sbjct: 979 QSEISSFVKERDYEIDVVSEYFHDELRKLLRNAGVKV------KGYSDLDSFFAEASDDT 1032 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W + D KV V+ ++ ++++ +F+ K++K+ +G D+P GVL +VKVFVA+ Sbjct: 1033 LWSTGLADAKVAAKVKDMRERFDSIVGEAHRKFEQKVDKLNYGYDLPQGVLTIVKVFVAV 1092 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 K +Q GDKMAGRHGNKG++SRI+P EDMP L+DGTPVDI+LN LGVPSRMN+GQI ETH Sbjct: 1093 KHNLQPGDKMAGRHGNKGVISRIVPAEDMPHLEDGTPVDIILNSLGVPSRMNIGQILETH 1152 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA V LGKKI +++ I+ LR FL+K+ I+ +++L A + Sbjct: 1153 LGWAAVNLGKKIGRILDKGGP-SMIADLRDFLDKIYDGQKLKSDIASMSSEALLVFANRL 1211 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++ PVF+G + I+ +L +A++D SGQ LYDG G+ FDR +TVGYIYMLKL+ Sbjct: 1212 RKGVPMAAPVFEGPKDAQISKLLELAEVDPSGQVYLYDGRLGKKFDRKITVGYIYMLKLH 1271 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSD Sbjct: 1272 HLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1331 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 D+VGR ++YESI+ G+ FE G PESFNV+VKE+++L L++ L+ + S ++E Sbjct: 1332 DIVGRVKIYESIIKGDSNFECGIPESFNVMVKELRSLCLNVVLKQDKEFTSGEVE 1386 >gi|206890934|ref|YP_002249156.1| DNA-directed RNA polymerase, beta subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742872|gb|ACI21929.1| DNA-directed RNA polymerase, beta subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 1312 Score = 1468 bits (3800), Expect = 0.0, Method: Composition-based stats. Identities = 693/1363 (50%), Positives = 950/1363 (69%), Gaps = 66/1363 (4%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R R FGK P ++++P L+E Q+ S+D FL +I P+ER +EGLQ+A SVFPI+ ++G Sbjct: 6 RERINFGKVPPLVEVPYLLEFQRKSFDKFLQKDIPPEERADEGLQSALNSVFPISDYNGT 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 +EF+SY PK +C+ + LTY+VP+K+ +RL ++D DE G K +K+ +EQ ++ Sbjct: 66 TTIEFISYSVGEPKLTPYECMVKGLTYSVPIKMKVRLNIWDKDEE-GRKFLKESREQEVF 124 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +GDLP+MT+ G+F+I G++R++VSQLHRSPG++F D+ ++ +SG+ LY+ RIIP +G W Sbjct: 125 LGDLPMMTETGSFIINGVERVIVSQLHRSPGVYFAPDRSKSRISGRFLYSARIIPVRGSW 184 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 +D EFDSKD+++VRID+R+K+P T L ALG +E++L FYP D + Sbjct: 185 LDFEFDSKDLLYVRIDKRKKLPATIVLKALGYTNEDLLRIFYPIEEIRI-KDETTYTRVV 243 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 +D++ G + + D + +++ G K+T LK +KE G++ + I+ + G D Sbjct: 244 SDILTGVRTKVDICSADGKDIIVKEGSKITRYSLKKMKELGIQEIPISKSEIIGRITLSD 303 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 IV+ ETGE+ +++ I E+S I + I+ + +L++D++N +R TL+TDK +++K Sbjct: 304 IVDPETGEVIVDSNKEITEESFHRIISARIQKLELLFIDNINYLPSLRETLLTDKVENKK 363 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 AL +IY+ +RPG+ +T AE +F LFFD +YDLS+VGR+K+N +L LD P DVR + Sbjct: 364 HALREIYKKLRPGEPATEEAAEELFYGLFFDPKRYDLSSVGRLKLNQKLGLDIPLDVRVL 423 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 +DII I+K L++LR GKG +DDID+LGNRRVR VGE+L+NQ+R+GL+RMER+I+E+++ Sbjct: 424 TDKDIIEIVKYLLNLRTGKGEVDDIDHLGNRRVRGVGELLENQFRIGLVRMERAIREKMT 483 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D+++ MP D+IN KPV++AV EFF +SQLSQ + N LS ITH RRLSALG GG+ R Sbjct: 484 ITDVETAMPHDVINTKPVMAAVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLTR 543 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT 611 RAG E+RDVHPTHYGRICP ET EG NIGL++SL ++AR+N +GFIE+PYRKV +GKVT Sbjct: 544 ERAGFEVRDVHPTHYGRICPIETPEGPNIGLITSLATYARINDFGFIESPYRKVVNGKVT 603 Query: 612 NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQV 671 NDV +LSA+E EN IA+A + +DE+G+ E V R G+ +V RE+++++D SPKQ+ Sbjct: 604 NDVHFLSALESENYVIAEATTPVDEEGNIIGETVSARVKGDFKMVSREEVEYMDVSPKQI 663 Query: 672 VSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR 731 VS++ASLIPFLENDD+NR LMG NMQRQAVPL+ EAP VGTGME A+ SG +VAKR Sbjct: 664 VSLSASLIPFLENDDANRALMGSNMQRQAVPLIHTEAPIVGTGMELYAARDSGWLVVAKR 723 Query: 732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRN 791 AGIVE VD+ RIVIR E GVDIY L+KF +SNQ TC+ Q+P+VKVG V R Sbjct: 724 AGIVENVDSRRIVIRVTEE-----GGGVDIYNLVKFHKSNQGTCMTQKPIVKVGQTVERG 778 Query: 792 DIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMA 851 I+ADGP D G+LALGRN+LVAFMPW GYNFED++L+SER+V EDV+TSIHI+EFE+ Sbjct: 779 TILADGPCMDNGELALGRNVLVAFMPWGGYNFEDAILVSERLVKEDVYTSIHIDEFEIEC 838 Query: 852 RDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEK 911 RDTKLGPEEITR+IPNV+EE LKN+DE GII +GA+V GDILVGK+TPKGE +TPEEK Sbjct: 839 RDTKLGPEEITREIPNVNEELLKNLDEDGIIRIGAKVKAGDILVGKVTPKGERVLTPEEK 898 Query: 912 LLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDK 971 LL AIFGEKA DV+++ L VP G+ G V+DV+I R G +K+ R+ ++E E+I+ + RD+ Sbjct: 899 LLYAIFGEKAEDVKESCLYVPPGIEGVVIDVKILTRKGKEKSRRANAIEEEEIKRIERDR 958 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-----KSTVLSSDLISEYPRSQWWQFAV 1026 +DE IL SR+ +IL G+ + K + K L+ +++ +Q + V Sbjct: 959 EDEIRILKETKASRIRKILKGKIILEDVKKGEKIICPKGKALTEKVVNLLDVNQLLKLKV 1018 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 +D V+ V + + E + + ++ KIE+I+ GD++PPGV ++VKV++AMKR IQ Sbjct: 1019 EDPDVKAEVSRVNKEVEQNIKQIYAKYNEKIERIKKGDELPPGVNQIVKVYIAMKRKIQV 1078 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG+VS ILP EDMP+L+DGTPVDIVLNPLGVPSRMNVGQI ETHLG A Sbjct: 1079 GDKMAGRHGNKGVVSMILPEEDMPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGLAAK 1138 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG + S + + +I + + Sbjct: 1139 ALGLYVASPVFEGAKEDEIKEMFRKVGYPTTGQVTL------------------------ 1174 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 G+ TGEPF+RPVTVGY+YMLKL+H+V+DK Sbjct: 1175 -----------------------YDGK-------TGEPFERPVTVGYMYMLKLHHLVADK 1204 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAAY LQE LT+KSDD+ GRT Sbjct: 1205 IHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEFLTVKSDDITGRT 1264 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 R+YE+IV G+ E G PESFNVL+KE+Q+L L +DL + K Sbjct: 1265 RMYEAIVKGHPVLEPGVPESFNVLIKELQSLCLDVDLLEKKKK 1307 >gi|269959039|ref|YP_003328828.1| DNA-directed RNA polymerase subunit beta [Anaplasma centrale str. Israel] gi|269848870|gb|ACZ49514.1| DNA-directed RNA polymerase subunit beta [Anaplasma centrale str. Israel] Length = 1382 Score = 1466 bits (3796), Expect = 0.0, Method: Composition-based stats. Identities = 675/1375 (49%), Positives = 954/1375 (69%), Gaps = 27/1375 (1%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + K+ +I D + DLI +Q+ SYD F+ ++ G+Q+ F+++FPI G A Sbjct: 22 RLSYAKSIDIRDSLTDLIRIQRDSYDAFIGIDRGGSS----GIQSIFQAMFPIRDLLGRA 77 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +LEFV Y P++D +C+ R +T++VP++ITLR +V+ V DE T + Sbjct: 78 VLEFVGYNIGEPQYDEYECIKRGITFSVPIRITLRFVVWKVQEVSFKEVKYVVDEGTSER 137 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+K +KEQ + +GDLP+MT GTF+I GI+R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 138 SVKYMKEQEVSIGDLPMMTSYGTFIINGIERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 197 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + R+IP +G W+D EFD KDII+ RID++RK+PV+ L ALGM + +IL +FY K++Y + Sbjct: 198 SARVIPYRGSWLDFEFDIKDIIYFRIDKKRKLPVSYLLKALGMSNNDILDSFYDKVLYVR 257 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W P D G ++S L+D+D G ++++ ++T + K L G++ + Sbjct: 258 CDKGWRVPFIV-DRFKGVRLSYDLMDVD-GNVLVKANTRITLRIAKKLHADGLREYLVPF 315 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + G++VA D+V+ +G + I AG+ I + + ++ +I +I L +D + Y+ N Sbjct: 316 SGIAGMFVATDLVDPGSGAVIIHAGETITPEHIVKLELFDISEIAFLNIDFLTVGPYVLN 375 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN ++DAL +IYRV+R G+ S F LFF+S++YDLS VGR+K+N L Sbjct: 376 TLFLDKNMTQEDALFEIYRVLRSGESPNLDAVRSFFKGLFFESERYDLSVVGRIKLNSHL 435 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD +++ + KEDI+ ++K LV LR+G+G +DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 436 GLDVDENLTVLTKEDIVQVVKKLVLLRDGEGVVDDIDHLGNRRVRSVGEFIENQFRIGIL 495 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ MP D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 496 RLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 555 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +A++N YGFIE+ Sbjct: 556 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIES 615 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV + VT+ V YL AM+E + YIA A +++D++ F +++++CR G ++V E Sbjct: 616 PYRKVENRVVTDKVEYLLAMQEGDYYIADAGAAIDKNNRFVDDMLYCRHGGNFVMVKSED 675 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLK+EAP VGTGMESVVA Sbjct: 676 VDYVDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKSEAPLVGTGMESVVA 735 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SGA ++AKR GIV +VD IVIR+ + D GVDIYRL KFQRSN NTC+NQRP Sbjct: 736 AGSGAVVLAKRDGIVHRVDGSYIVIRAFDSSKDEC-LGVDIYRLRKFQRSNHNTCINQRP 794 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V++GD V+ ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V DVFT Sbjct: 795 VVRLGDYVKANDVIADGSAIDRGELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFT 854 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFE + RDT LGPE+I R +P+V+EE L ++D+ GI+ +GAEV+ ILVGK+TP Sbjct: 855 SIHIEEFECVVRDTPLGPEKIMRSVPDVNEESLSHLDDVGIVNIGAEVSASSILVGKVTP 914 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 + + PE KLL IFGEK D D+SL +P V GTV+DV +F R G+++N+RS+ ++ Sbjct: 915 RPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPPDVEGTVIDVHVFVRRGVEENDRSLLIK 974 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +I +++D E ++ + L ++L K +E Sbjct: 975 QSEISSFVKERDYEIDVVSEYFHDELKKLLRNAGVKV------KGHSDLDSFFAEASDDA 1028 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 W + D KV V+ ++ ++++ +F+ K++K+ +G D+P GVL +VKVFVA+ Sbjct: 1029 LWNTGLADVKVADKVKDMRERFDSIVGEAHRKFEQKVDKLNYGYDLPQGVLTIVKVFVAV 1088 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 K +Q GDKMAGRHGNKG++SRI+P EDMP L+DGTPVDI+LN LGVPSRMN+GQI ETH Sbjct: 1089 KHNLQPGDKMAGRHGNKGVISRIVPAEDMPHLEDGTPVDIILNSLGVPSRMNIGQILETH 1148 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA V LGKKI ++ D I+ LR FL+K+ + ++ D+++L A + Sbjct: 1149 LGWAAVNLGKKIGRIL-DGGGPSMIADLRDFLDKIYDGQKLKDDVASMSDEALLVFANRL 1207 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 + GVP++ PVF+G + I+ +L +A++D SGQ LYDG G+ FDR +TVGYIYMLKL+ Sbjct: 1208 RKGVPMAAPVFEGPKDAQISKLLELAEVDPSGQVDLYDGRLGKKFDRKITVGYIYMLKLH 1267 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 H+V DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSD Sbjct: 1268 HLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1327 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 D+VGR ++YESI+ G+ FE G PESFNV+VKE+++L L++ L+ + S ++E Sbjct: 1328 DIVGRVKIYESIIKGDSNFECGIPESFNVMVKELRSLCLNVVLKQDKEFTSGEVE 1382 >gi|85706810|ref|ZP_01037901.1| DNA-directed RNA polymerase beta subunit [Roseovarius sp. 217] gi|85668603|gb|EAQ23473.1| DNA-directed RNA polymerase beta subunit [Roseovarius sp. 217] Length = 1322 Score = 1466 bits (3794), Expect = 0.0, Method: Composition-based stats. Identities = 760/1280 (59%), Positives = 990/1280 (77%), Gaps = 13/1280 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + G R+RK++GK E++++P+LIEVQK+SYD FL P + EG++ F+SV Sbjct: 1 MAQSYLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLKSGDQPQPQDGEGIKGVFQSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI F+ ++LEFVSYE + PK+DV++C+ RD+TYA PLK+ LRLIVFD+DE TGAKS+ Sbjct: 61 FPIKDFNETSVLEFVSYELEKPKYDVEECMQRDMTYAAPLKVKLRLIVFDIDEDTGAKSV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ ++MGD+PLMT +GTFV+ G +R++VSQ+HRSPG+ FDHDKG+ SGKLL+ C Sbjct: 121 KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFTC 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD+KDI+ RIDRRRK+PVT+ L +LG+D E I++ +Y + + + Sbjct: 181 RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYSLGLDQEGIMNAYYDTVDFKLKK 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG-VKFLGITSD 301 + + G + + L+D TGE + E+ KK+T +K L ++G V L + + Sbjct: 241 KKGWVTKFFPERVRGTRPTYDLIDAKTGEVIFEASKKITPRAVKQLIDEGTVSELLVPFE 300 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEK----------SLEEIFHSEIRDIPILYVDS 351 + G +VA DI++ ETG IY+EAGD + + +L+++ + I DIP+L +D Sbjct: 301 HIVGKFVARDIIDEETGAIYVEAGDELTLEYDKAGEISGGTLQDLLDAGITDIPVLDIDG 360 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 +N AYIRNT+ DKN +R+ AL+DIYRVMRPG+ T + ++F+ LFFDS++YDLS V Sbjct: 361 INVGAYIRNTMAADKNMNRESALMDIYRVMRPGEPPTEEASAALFDTLFFDSERYDLSAV 420 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 GRVKMNMRLNL+ PD R + ++DI+A IK LV+LR+GKG IDDID+LGNRRVRSVGE++ Sbjct: 421 GRVKMNMRLNLNKPDTQRTLDRDDIVACIKALVELRDGKGDIDDIDHLGNRRVRSVGELM 480 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQYR+GLLRMER+IKER+SSV+ID+VMPQDLINAKP +AV EFF SSQLSQ + N Sbjct: 481 ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP 540 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +FAR Sbjct: 541 LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR 600 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN YGFIETPYRKV DG+VT++V Y+SA EE +AQAN++LDE G F +LV R +G Sbjct: 601 VNKYGFIETPYRKVIDGQVTDEVQYMSATEEMRHTVAQANANLDEGGRFVNDLVSTRQSG 660 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E +L PRE +D ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQRQAVP L+AEAP V Sbjct: 661 EYMLAPRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPTLRAEAPLV 720 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E VVA+ SGAAI+AKRAG+++QVDA RIV+R+ E L GVDIYR+ KFQRSN Sbjct: 721 GTGIEGVVARDSGAAIMAKRAGVIDQVDAQRIVVRATED-LQIGDPGVDIYRMRKFQRSN 779 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QN+C+NQ+PLVKVGD V + ++IADGP TD+G+LALG+N++ AFMPW+GYN+EDS+LISE Sbjct: 780 QNSCINQQPLVKVGDTVLKGEVIADGPCTDMGELALGKNVITAFMPWNGYNYEDSILISE 839 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+V +DVFTSIHIEEFEV ARDTKLGPEEITRDIPNV EE L+N+DE GI+ +GA+V PG Sbjct: 840 RIVRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPG 899 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPKGESPMTPEEKLLRAIFGEKA DVRDTSLRV G GTVV+VR+FNRHG++ Sbjct: 900 DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVE 959 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K+ER++ +ERE++E LARD+DDE ILDRNIY+RL ++ G+ AV GPKG K ++ ++ + Sbjct: 960 KDERALQIEREEVERLARDRDDELAILDRNIYARLRTLILGKMAVKGPKGVKANSDITEE 1019 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+S + QWWQ A++DE + VE+L QYE K L+ RF++K+EK++ GDD+PPGV+ Sbjct: 1020 LLSTLTKGQWWQLALKDEADAKIVEALHDQYEAQKRTLDARFEDKVEKVRRGDDLPPGVM 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A+KR +Q GDKMAGRHGNKG+VS+++P EDMPFL DGTPVDI LNPLGVPSRM Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVVSKVIPIEDMPFLADGTPVDICLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQI ETH+GWA LG KI + +Y+ +GD++P+R + G + E I D+ Sbjct: 1140 NVGQILETHMGWAARSLGLKIDEALQEYRRSGDLTPVREAMRIAYGDDVYAEGIEGMDET 1199 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 +++ A +GVP++TPVFDGA E +N LR A D SGQS+L+DG +GE F RPVTV Sbjct: 1200 TLVESASTVTNGVPIATPVFDGAKEADVNDALRRAGFDTSGQSVLFDGRSGEQFSRPVTV 1259 Query: 1252 GYIYMLKLNHMVSDK-VYAR 1270 G Y+LKL+H+V D+ +AR Sbjct: 1260 GIKYLLKLHHLVDDRSTHAR 1279 >gi|152980439|ref|YP_001355110.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Janthinobacterium sp. Marseille] gi|151280516|gb|ABR88926.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Janthinobacterium sp. Marseille] Length = 1240 Score = 1465 bits (3792), Expect = 0.0, Method: Composition-based stats. Identities = 648/1245 (52%), Positives = 879/1245 (70%), Gaps = 15/1245 (1%) Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 MG+LPLMT G+FVI G +R++VSQLHRSPG+ F+HD+G+ SGKLL++ RIIP +G W Sbjct: 1 MGELPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARIIPYRGSW 60 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 +D EFD KDI+ R+DRRRK+PVT L A+GM E+IL F+ ++ D A Sbjct: 61 LDYEFDPKDILFFRVDRRRKMPVTILLKAIGMTPEQILENFFVFDDFALHADGAEMAFVA 120 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 L G + D G+ ++ K++ S ++ ++ G+K + + D L G +A++ Sbjct: 121 ERL-RGEVARFDITD-KAGKVLVAKDKRINSKHVRDVEAAGIKNISVPEDYLLGRILAKN 178 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 IV+ ETGE+ A D + E L + ++ I LY + ++ YI TL D D+ Sbjct: 179 IVDKETGEVIANANDELTEDLLARLREGKVTHIQTLYTNDLDQGGYISQTLRMDDTTDQM 238 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 A + IYR+MRPG+ T E++FN LF+++D+YDLS VGR+K N R+ D + Sbjct: 239 AAKVAIYRMMRPGEPPTEDSVEALFNGLFYNADRYDLSAVGRMKFNRRIGRDELTGDMTL 298 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 +D++A+IKILV+LRNG+G +DDID+LGNRRVR VGE+ +NQ+R GL+R+ER++KER+ Sbjct: 299 SNDDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLG 358 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 + D++MP DLIN+KP+ +A+ EFF SSQLSQ + N LS ITH RR+SALG GG+ R Sbjct: 359 QAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTR 418 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT 611 RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR+N YGF+ETPYRKV K+T Sbjct: 419 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKVEGSKIT 478 Query: 612 NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQV 671 + + YLSA+EE IAQAN+++D+ G+ ++ELV R AGE ILV E++ ++D +P QV Sbjct: 479 DQIDYLSAIEEGRYIIAQANATIDKSGALSDELVSAREAGETILVSPERVQYMDVAPGQV 538 Query: 672 VSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR 731 VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E FVGTG+E VA SG + A R Sbjct: 539 VSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKAFVGTGIERTVAVDSGTTVQALR 598 Query: 732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRN 791 GIV+ +DA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+V+VGD V ++ Sbjct: 599 GGIVDYIDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVQVGDRVAKH 658 Query: 792 DIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMA 851 D+IADG STDLG+LALG+NMLVAFMPW+GYNFEDS+LISE++V++D +TSIHIEE V+A Sbjct: 659 DVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEELSVVA 718 Query: 852 RDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEK 911 RDTKLG EEITRDI N++E L +DE GI+ +GAEV GD LVGK+TPKGE+ +TPEEK Sbjct: 719 RDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVTAGDTLVGKVTPKGETQLTPEEK 778 Query: 912 LLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDK 971 LLRAIFGEKA DV+DTSLRVPSG+ GTV+DV++F R GI +++R+ + ++++ D Sbjct: 779 LLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIPRDKRAQQIIDDELQRYRLDL 838 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 +D+ I++ + + RL ++L G+ GPK K ++ + + + + W+ D+ Sbjct: 839 NDQLRIVEGDAFQRLEKMLIGKVVNGGPKKIAKGAKITKEYLDDLDKYHWFDIRPADDTS 898 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 +E++K + + F+ K +K+ GD++PPGV ++VKV++A+KR +Q GDKMA Sbjct: 899 ANALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQPGDKMA 958 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG+VSRILP EDMP + DGTP D+VLNPLGVPSRMNVGQ+ E HLGWA GLG + Sbjct: 959 GRHGNKGVVSRILPIEDMPHMADGTPADVVLNPLGVPSRMNVGQVLEVHLGWAAKGLGLR 1018 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I ++N A I+ LR FL + TE + + D +L +A K+GVP +TPVF Sbjct: 1019 IGEMLN---AQVQIAELRKFLAAIYNESGKTEDLDSFSDAEILELAGNLKNGVPFATPVF 1075 Query: 1212 DGADEEAINSMLRMADLDESGQ----------SILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 DGADE ML +A D + +YDG TGE F+R VTVGY++ LKL+H Sbjct: 1076 DGADEGETRRMLDLAYPDHIAKQLGMTASKNQVTMYDGRTGEAFERTVTVGYMHYLKLHH 1135 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQEMLT+KSDD Sbjct: 1136 LVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDD 1195 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 V GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDLE Sbjct: 1196 VNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERD 1240 >gi|330720212|gb|EGG98590.1| DNA-directed RNA polymerase beta subunit [gamma proteobacterium IMCC2047] Length = 1252 Score = 1461 bits (3782), Expect = 0.0, Method: Composition-based stats. Identities = 657/1258 (52%), Positives = 895/1258 (71%), Gaps = 29/1258 (2%) Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 MG++PLMT +GTFV+ G +R+VVSQLHRSPG+ FDHDKG+ SGKLLY+ R+IP +G W Sbjct: 1 MGEMPLMTDNGTFVVNGTERVVVSQLHRSPGVFFDHDKGKTHSSGKLLYSARVIPYRGSW 60 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 +D EFD KD + VRIDRRRK+P T L ALG +E+IL+ F+ + G + L A Sbjct: 61 LDFEFDPKDSLFVRIDRRRKLPATVLLRALGYTAEQILAEFFENSAFQFDGSAYKLELVA 120 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 + + G + + D G+ V+E G+++T+ ++ +++ L + + L G +A+D Sbjct: 121 -NRLRGETATFDIKDS-NGKVVVEEGRRITARHIREMEKTKTTQLEVPREYLFGKVIAKD 178 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 ++N ETGEI E I E L ++ + +++I LY + ++ ++I +TL D + ++ Sbjct: 179 MINPETGEIICECNAEITEDILTQLEEAGVKEIQTLYTNDLDCGSFISDTLRADTSTNQL 238 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +AL++IYR+MRPG+ T AE++F LFF ++YDLS VGR+KMN R++ + + Sbjct: 239 EALVEIYRMMRPGEPPTKESAENLFYNLFFADERYDLSAVGRMKMNRRIDREETKGAGIL 298 Query: 432 ----------------------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 + DI+ ++K L+ +RNG G +DDID+LGNRR+RSVGE Sbjct: 299 YDGCYFGMRNEETAKKLVEKYGDQSDIVDVMKTLIAIRNGFGVVDDIDHLGNRRIRSVGE 358 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 M +NQ+R+GL+R+ER+++ER+S + D +MPQDLINAKPV +A+ EFF SSQLSQ + Sbjct: 359 MAENQFRVGLVRVERAVRERLSMAESDGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQN 418 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +F Sbjct: 419 NPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATF 478 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 AR N YGF+E+PYRKV DGKVT+++ ++SA++E IAQA++S+D++G T+ELV R Sbjct: 479 ARTNNYGFLESPYRKVVDGKVTDEIQFVSAIDESAFVIAQASASVDKNGKLTDELVQVRH 538 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 E + P E + +D SP+QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P Sbjct: 539 ENEFTVKPPETVSLMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLQAQTP 598 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 VGTGME VA+ SG IVAKR G+++ VDA ++V+R+ E + +GVDIY L K+ R Sbjct: 599 LVGTGMERFVARDSGVCIVAKRGGVIDSVDAGKVVVRANEDESVSGEAGVDIYNLTKYIR 658 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 SNQNTC+NQRPLV GD V R DI+ADGPS D+G+LALG+NM +AFMPW+GYNFEDS+LI Sbjct: 659 SNQNTCINQRPLVSEGDVVARGDILADGPSVDIGELALGQNMRIAFMPWNGYNFEDSILI 718 Query: 830 SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 SER+ ED FT+IHI+E +ARDTKLG E+I+ DIPNV E L +DE GI+ +GAEV Sbjct: 719 SERVAQEDRFTTIHIQELTCVARDTKLGSEDISSDIPNVGESALSKLDESGIVYIGAEVG 778 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 PGDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR +G+SGTV+DV++F R G Sbjct: 779 PGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRCKTGMSGTVIDVQVFTRDG 838 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 ++K++R++ +E + +D D+E I++ + RL +I+ V G G K L+ Sbjct: 839 VEKDKRAMDIENSMLADYRQDLDEEYRIVEAATFERLKQIIV-GQEVVGGVGLNKGDKLT 897 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + E + + D+ + VE+ + ++ L+++++ K K+Q GDD+ PG Sbjct: 898 QAYLDEATSEDLLKLRLSDDAAAQEVENAETVLADVRAELDEKYEIKRGKLQTGDDLAPG 957 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 VL++VKV++A KR IQ GDKMAGRHGNKG++S I P EDMP +GTPVDIVLNPLGVPS Sbjct: 958 VLKIVKVYLATKRRIQPGDKMAGRHGNKGVISAIKPVEDMPHDANGTPVDIVLNPLGVPS 1017 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSHTEKISDY 1188 RMNVGQ+ ETHLG A GLG KI ++ K+ +S +R FL+K+ G E + ++ Sbjct: 1018 RMNVGQVLETHLGLAAKGLGDKINGML---KSQAKVSEIRGFLDKIYNKIGGRNEDLKEF 1074 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 DD ++ +A K GVP++TP FDGA E I +ML +ADL SGQ L+DG TG+ FDRP Sbjct: 1075 SDDEIIELASNLKKGVPMATPAFDGAHETEIKAMLELADLPSSGQMTLFDGRTGDAFDRP 1134 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA Sbjct: 1135 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1194 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 Y LQEMLT+KSDDV GRTR+Y++IV G+ E G PESFNVL KE+++LG+ I+LEN Sbjct: 1195 YTLQEMLTVKSDDVNGRTRMYKNIVDGDHRMEPGMPESFNVLTKEIRSLGIDIELENE 1252 >gi|145640490|ref|ZP_01796074.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae R3021] gi|145275076|gb|EDK14938.1| DNA-directed RNA polymerase subunit beta [Haemophilus influenzae 22.4-21] Length = 1214 Score = 1453 bits (3761), Expect = 0.0, Method: Composition-based stats. Identities = 654/1230 (53%), Positives = 881/1230 (71%), Gaps = 17/1230 (1%) Query: 138 MTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFD 197 MT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY RIIP +G W+D EFD Sbjct: 1 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 60 Query: 198 SKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVG 257 KD + RIDRRRK+P T L ALG +EEIL+ F+ KI + GD L L G Sbjct: 61 PKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAGDKLLMTLVPERL-RG 119 Query: 258 AKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGET 317 S + G+ +E G+++T+ +K+L++ + + + S+ + G ++D V+ E+ Sbjct: 120 ETASFDIE--ANGKVYVERGRRITARHIKALEKDNISQVVVPSEYILGKVASKDYVDLES 177 Query: 318 GEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDI 377 GEI A I ++L ++ + I L+ + ++ YI TL D D+ AL +I Sbjct: 178 GEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETLRVDPTYDKTSALYEI 237 Query: 378 YRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDII 437 YR+MRPG+ T +E++FN LFF +++YDLSTVGR+K N L + + EDII Sbjct: 238 YRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAFPEGEGAGILSNEDII 297 Query: 438 AIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDS 497 A+++ L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ER++KER+S D+D+ Sbjct: 298 AVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLSLGDLDA 357 Query: 498 VMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVE 557 + PQDLIN KP+ +AV EFF SSQLSQ + N LS +TH RR+SALG GG+ R RAG E Sbjct: 358 ITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFE 417 Query: 558 MRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYL 617 +RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPYRKV DG+VT ++ YL Sbjct: 418 VRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKVVDGQVTEEIEYL 477 Query: 618 SAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDASPKQVVSIAA 676 SA++E N IAQANS+LDE+ FT+ V R GE L E I ++D S +QVVS+AA Sbjct: 478 SAIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDIHYMDVSTQQVVSVAA 537 Query: 677 SLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 +LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +A SG A+VAKR G V+ Sbjct: 538 ALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAVVAKRGGTVQ 597 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 VDA RIVI+ E + +G+DIY L+K+ RSNQNTC+NQ P V +GD + R +++AD Sbjct: 598 YVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGDPINRGEVLAD 657 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 GPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+IHI+E +ARDTKL Sbjct: 658 GPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTTIHIQELSCVARDTKL 717 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G EEIT DIPNV E L +DE GI+ VGAEV GDILVGK+TPKGE+ +TPEEKLLRAI Sbjct: 718 GSEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEEKLLRAI 777 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 FGEKA DV+D+SLRVP+G SGTV+DV++F R G++K++R++ +E Q+ +D +E Sbjct: 778 FGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEEMQLREAKKDLTEELE 837 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 IL+ +++R+ +L A + + + R++W + + DE+ Q +E Sbjct: 838 ILEAGLFARVRNLLISSGA-------------DAAQLDKVERTKWLEQTIADEEKQNQLE 884 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 L QYE + E + + K +KI GDD+ PGVL+VVKV++A+KR IQ GDKMAGRHGN Sbjct: 885 QLAEQYEELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGN 944 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG++S+I P EDMP+ ++G PV+IVLNPLGVPSRMN+GQI ETHLG A G+G +I +++ Sbjct: 945 KGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINAML 1004 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 + + ++G GS +S + D+ VLR+A + G+PV+TPVFDGADE Sbjct: 1005 KQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLRKGLPVATPVFDGADE 1064 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 I +L++ L SGQ LYDG TGE F+RPVTVGY+YMLKLNH+V DK++ARSTGSYS Sbjct: 1065 AEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1124 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 LVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV+GN Sbjct: 1125 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVSGN 1184 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENS 1366 + GTPESFNV++KE+++LGL+I+L+ Sbjct: 1185 QHMDPGTPESFNVIMKEIRSLGLNIELDEE 1214 >gi|291280155|ref|YP_003496990.1| DNA-directed RNA polymerase subunit beta [Deferribacter desulfuricans SSM1] gi|290754857|dbj|BAI81234.1| DNA-directed RNA polymerase, beta subunit [Deferribacter desulfuricans SSM1] Length = 1315 Score = 1445 bits (3740), Expect = 0.0, Method: Composition-based stats. Identities = 678/1365 (49%), Positives = 933/1365 (68%), Gaps = 65/1365 (4%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F K +++DIPDL+EVQK SY FL MN+ PD+R +GL+A F+ +FPIT F+ ++ Sbjct: 9 ERFNFSKIRKVLDIPDLLEVQKNSYKEFLQMNVDPDKREVKGLEAVFREIFPITDFNESS 68 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE+VSY + PK+ + L R+ TYA PLK+ +RL+ +D DE TG K + KE +Y+ Sbjct: 69 VLEYVSYTLEKPKYTPREALDRNTTYAAPLKVRVRLVNYDTDESTGEKIVVSAKESDVYL 128 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 D+PLMT+ TFVI G++R++V+QLHRSPGI F+ S+ K LY+ RIIP +G W+ Sbjct: 129 CDIPLMTERATFVINGVERVIVNQLHRSPGIFFEDATADKSVVEKHLYSARIIPYRGSWI 188 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D EFD+KD++HVRID++RK+ VT+ L ALG ++ILS FY D Sbjct: 189 DFEFDNKDVMHVRIDKKRKILVTTLLKALGYTEKDILSEFYEVETVHFADDGMFIDFDP- 247 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 D ++G + S + D + GE ++++ K+T + L GVK++ +T D + + AED+ Sbjct: 248 DKILGRRFSLDIKD-EYGETIVKANHKITKAARRRLVNAGVKYIPVTIDDIAETFFAEDV 306 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 V E GE+ E ID++ ++ I I++I IL++D N ++ IR+ L DK +R++ Sbjct: 307 V-TEDGEVIAEVNQKIDQEVIDRILSEGIKEIKILFIDKNNYDSVIRDILEIDKTSNREE 365 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 AL++IY+ MRPG+ ++ AE+ F LFF+ +YDLS VGR+K+N RL L+ P + + Sbjct: 366 ALIEIYKKMRPGEPASLETAEAFFENLFFNPKRYDLSKVGRLKINKRLGLNVPLEHTILT 425 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 KEDI+ +K L +R G T+DDID+LG+RRVR+VGE L+N R+GL RME++++ER+S Sbjct: 426 KEDILESVKTLDKIRRGLDTVDDIDHLGHRRVRAVGEQLENFIRIGLTRMEKTVRERMSI 485 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 D++ + PQDL+NAKP+ + + EFF S QLSQ + N LS +TH RRLSALG GG+ R Sbjct: 486 SDVEDMTPQDLLNAKPLSATIKEFFGSYQLSQFMDQTNPLSEVTHKRRLSALGPGGLNRE 545 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVH +HYGRICP ET EG NIGL++SLT++ARVN +GFIETPYRKV DGKVT+ Sbjct: 546 RAGFEVRDVHTSHYGRICPIETPEGPNIGLITSLTTYARVNEFGFIETPYRKVVDGKVTD 605 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 +VVYLSA+EEE YIAQAN+ L+EDG+F + V R GE + VP I F+D P Q+V Sbjct: 606 EVVYLSAIEEEEYYIAQANAPLNEDGTFVRDYVAARYKGESVTVPPSYIQFMDVDPMQIV 665 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S++++LIPFLE+DD+NR LMG NMQRQAVPL++ +AP VGTG+E VA SGA IVAK Sbjct: 666 SVSSALIPFLEHDDANRALMGSNMQRQAVPLVRTDAPIVGTGLERKVAVDSGAVIVAKNG 725 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G+VE VDA +IVIR + G+D Y L+K++RSNQ+TC+N +P+V+ G +V + Sbjct: 726 GVVEYVDARKIVIRYEKSGH---EFGIDTYDLIKYRRSNQDTCINYKPIVQKGQKVEKGQ 782 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 +IADGP+TD GDLALGRN++VAFMPW GYN+EDS+LI+E++V ED FTSIH+E FEV AR Sbjct: 783 VIADGPATDRGDLALGRNVVVAFMPWMGYNYEDSILINEKLVKEDAFTSIHVEIFEVEAR 842 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLGPEEITRDIPNVS+E LK++D+ GII +GA V GDILVGK+TPKGES TPEEKL Sbjct: 843 DTKLGPEEITRDIPNVSDEALKDLDDSGIIRIGAYVKEGDILVGKVTPKGESQATPEEKL 902 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFGEKA DV+D SLRVP G+ GTV+DV++ R G++K+ER+ +E + E + +D + Sbjct: 903 LRAIFGEKAGDVKDASLRVPPGIRGTVIDVQVLTRRGVEKDERTEHIEAAEYEQIKKDYE 962 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKG----FKKSTVLSSDLISEYPRSQWWQFAVQD 1028 +E I+++ +++++L G+ + K+ TVL+ +L+++ + +++ Sbjct: 963 NEVAIIEQGRKKKIIKLLTGRKLIEDFIDDNITIKEGTVLTEELLNDLDYATLSTLPIEN 1022 Query: 1029 E-KVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 + + + + + Y E++FK++ +KI+ GD++P GVL+ V+V+VA+KR + G Sbjct: 1023 KAEFDEKLSQINLIYFDRVKRAEEKFKDRKKKIEKGDELPAGVLKQVRVYVAIKRKLMVG 1082 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRILP EDMP+L DGTPVDIVLNPLGVPSRMNVGQI ETHLG A Sbjct: 1083 DKMAGRHGNKGVISRILPEEDMPYLPDGTPVDIVLNPLGVPSRMNVGQILETHLGIAAKA 1142 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG + + + D DI + Sbjct: 1143 LGLYVATPVFDGAKESDIKEMLKKAGLQEDGQ---------------------------- 1174 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 T ++DG TGEPFD+ VTVG +YMLKL+H+V K+ Sbjct: 1175 TVLYDG--------------------------RTGEPFDQEVTVGVMYMLKLHHLVETKI 1208 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++ YGAAY+LQEMLT+KSDDV GRT+ Sbjct: 1209 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEGYGAAYLLQEMLTVKSDDVEGRTK 1268 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 VYE+IV GN +F+TG PESFNVL+KE+Q L L ++L Sbjct: 1269 VYEAIVNGNYSFKTGLPESFNVLIKELQGLALDVELIKKEDLKEE 1313 >gi|294664237|ref|ZP_06729612.1| DNA-directed RNA polymerase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605996|gb|EFF49272.1| DNA-directed RNA polymerase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1249 Score = 1444 bits (3739), Expect = 0.0, Method: Composition-based stats. Identities = 650/1255 (51%), Positives = 879/1255 (70%), Gaps = 33/1255 (2%) Query: 138 MTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFD 197 MT +GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ RIIP +G W+D EFD Sbjct: 1 MTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFD 60 Query: 198 SKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVG 257 KD + RIDRRRK+PV+ L ALG +EE+L+ F+ + D + + G Sbjct: 61 PKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPDEGVQLELVPERLRG 120 Query: 258 AKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGET 317 ++ L D D + ++E+GK++T+ +K L+ GV L + D L G ++ D+V+G T Sbjct: 121 ETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYLVGRILSHDVVDGST 178 Query: 318 GEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDI 377 GE+ A D I+E L + + + L+V+ ++ Y+ NTL D K + +AL++I Sbjct: 179 GELLANANDEINEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLRIDPTKTQLEALVEI 238 Query: 378 YRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDII 437 YR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ + + Sbjct: 239 YRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKDVLGESVLYDKKYF 298 Query: 438 A----------------------IIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQY 475 A +IK+L ++RNG+G +DDID+LGNRRVRSVGEM +N + Sbjct: 299 AERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHLGNRRVRSVGEMAENVF 358 Query: 476 RLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRI 535 R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQLSQ + N LS + Sbjct: 359 RVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEV 418 Query: 536 THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIGL++SL FAR N Y Sbjct: 419 THKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLINSLAVFARTNQY 478 Query: 596 GFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 GF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D TE+ V CR GE +L Sbjct: 479 GFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLTEQFVPCRFQGESLL 538 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAVP L+++ P VGTG+ Sbjct: 539 KPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTLRSQKPLVGTGI 598 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVDIYRLMKFQRSNQNT 774 E VA+ SG + A R G++EQ+DA RIV++ E + +GVDIY L+K+ RSNQNT Sbjct: 599 ERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVDIYNLIKYTRSNQNT 658 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+GYNFEDS+L+SER+V Sbjct: 659 CINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYNFEDSILLSERVV 718 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G++ +GAEV GDI+ Sbjct: 719 EEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVVYIGAEVRAGDIM 778 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ GTV+DV++F R GI+K++ Sbjct: 779 VGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDVQVFTRDGIEKDK 838 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R+ +E +I+ + +D DD+ IL+ IY+RL + G+ A G KK ++ + Sbjct: 839 RARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGG-ANLKKGDTVTDAYLD 897 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 +S W+Q ++DE +E + Q + + E RF +K KI GDD+ PGVL++V Sbjct: 898 GLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKITQGDDLAPGVLKMV 957 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KVF+A+KR IQ GDKMAGRHGNKG+VS ++P EDMP++ G VDIVLNPLGVPSRMN+G Sbjct: 958 KVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGESVDIVLNPLGVPSRMNIG 1017 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE----KISDYDD 1190 QI E HLGWA GLG+KI+ ++ +A +S LR FL + + +S + D Sbjct: 1018 QILEVHLGWAAKGLGRKIQRML---EAQAAVSELRKFLNDIYNHDNAINAQRVDLSQFSD 1074 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 + +L + + GVP++TPVFDGA E I ML +ADL +SGQ+ LYDG TGE FDR T Sbjct: 1075 EELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADLPQSGQTQLYDGRTGEAFDRKTT 1134 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VGY++ LKLNH+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1135 VGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1194 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 LQEMLT+KSDDV GR ++Y++IV G G PESFNVLVKE+++L ++++LE Sbjct: 1195 LQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINMELEE 1249 >gi|41017787|sp|Q9AIU3|RPOB_ANAPH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|13183060|gb|AAK15035.1| RNA polymerase beta subunit [Anaplasma phagocytophilum] Length = 1394 Score = 1440 bits (3728), Expect = 0.0, Method: Composition-based stats. Identities = 669/1384 (48%), Positives = 948/1384 (68%), Gaps = 38/1384 (2%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + ++ +I D + DLI +Q+ SYD F+ ++ G+Q+ F+S+FPI G A Sbjct: 27 RLSYARSIDIRDSLSDLIRIQRDSYDAFIGIDEGSSG----GIQSIFQSMFPIRDPLGRA 82 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +LEFVS P++D +C+ R +T++VP++ITLR +V+ V DE T + Sbjct: 83 VLEFVSCNIGEPQYDEYECIKRGITFSVPMRITLRFVVWKVQEVSFKEVKYVVDEGTLER 142 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 S+K +KEQ + +GDLP+MT GTF+I GI+R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 143 SVKYMKEQEVSIGDLPMMTSYGTFIINGIERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 202 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KDII+ RID++RK+PVT L ALGM + +IL TFY K++Y + Sbjct: 203 SARIIPYRGSWLDFEFDIKDIIYFRIDKKRKLPVTYLLKALGMSNNDILDTFYDKVLYVR 262 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W P D G ++S L+D+D G +I++ ++T + K L G++ + Sbjct: 263 SDKGWKVPFVV-DRFKGVRLSYDLMDVD-GNVLIKANTRITLRIAKKLYADGLREYLVPF 320 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + GL+VA D+V+ +G + + AG+ I + + ++ +I +I L +D + Y+ N Sbjct: 321 AGISGLFVATDLVDPASGAVIVSAGEAIAAEHIVKLELFDISEIAFLNIDFLTVGPYVLN 380 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL D++ ++DAL +IYRV+R G+ +S F LFF+ D+YDLS VGR+K+N L Sbjct: 381 TLFLDRHITQEDALFEIYRVLRSGESPNLEAVKSFFKGLFFEPDRYDLSVVGRIKLNSHL 440 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 LD +++ + K+DI+ +IK LV LR+G+G +DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 441 RLDIDENLTVLTKDDIVHVIKKLVLLRDGEGVVDDIDHLGNRRVRSVGEFIENQFRVGIL 500 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ +P D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 501 RLERMIMDYMSSVNFDNAVPCDFVNPKILATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 560 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +A++N YGFIE+ Sbjct: 561 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIES 620 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV DG VT+ V YL A +E + YIA A ++LDE+ F +++++CR G ++V RE Sbjct: 621 PYRKVIDGVVTDSVEYLLATQESDYYIADAGAALDENNRFVDDMLYCRHGGNFVMVKRED 680 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +++ID SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLKAEAP VGTGMESVVA Sbjct: 681 VNYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKAEAPLVGTGMESVVA 740 Query: 721 KSSGAAIVAKRAGIVEQVDAI-RIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 SGA ++AKR G++ +VD + VIR+ + + D V IY K QRSN NTC+NQR Sbjct: 741 AGSGAVVLAKRDGVLHRVDRVLYPVIRAFDKNKDS--ILVLIYTTEKVQRSNHNTCINQR 798 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P+VK+GD VR ND+IADG + D G+LALG+N+LVAFM W G NFEDS++IS +V DVF Sbjct: 799 PIVKIGDYVRTNDVIADGAAIDRGELALGKNVLVAFMSWQGCNFEDSIVISSDVVKRDVF 858 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEEFE + RDT LGPE+I R +P+V+EE L ++D+ GI+ +GAEV+ G +LVGK+T Sbjct: 859 TSIHIEEFECVVRDTPLGPEKIMRSVPDVNEESLSHLDDVGIVNIGAEVSAGSVLVGKVT 918 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 P+ + PE KLL IFGEK D D+SL +P V GTV+DV +F R G+++N+RS+ + Sbjct: 919 PRPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPPDVEGTVIDVHVFVRRGVEENDRSLLI 978 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 ++ ++ +++D E ++ Y L ++LC + L++ Sbjct: 979 KQSEVNSFRKERDYEIDVVSEYFYDELKKLLCSADLPLN------GHADVESLLAAKSLE 1032 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 W+ + + K+ V +K +++ + +F KI+K+ +G D+P GVL +VKVFVA Sbjct: 1033 ALWEIGLSNPKISAKVADMKGKFDELITEAHSKFDQKIDKLNYGYDLPQGVLTIVKVFVA 1092 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 +K +Q GDKMAGRHGNKG++SRI+P EDMP L+DGTPVDI+LN LGVPSRMN+GQI ET Sbjct: 1093 VKHNLQPGDKMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLGVPSRMNIGQILET 1152 Query: 1140 HLGWACVGLGKKIKSLINDYKANGD-ISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 HLGWA V LG ++ +++ + G + +RSFL +V E ++ D+++L+ A Sbjct: 1153 HLGWAAVNLGHRVGRMLDSGEEEGPVVERIRSFLSEVYEGQKLKEDVASMSDEALLKFAN 1212 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 + + GVP++ PVF+G + I+ +L +AD+D SGQ LYDG +G+ FDR VTVGYIYMLK Sbjct: 1213 RLRRGVPMAAPVFEGPKDAQISRLLELADVDPSGQVDLYDGRSGQKFDRKVTVGYIYMLK 1272 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+K Sbjct: 1273 LHHLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVK 1332 Query: 1319 SDDVV-GR------TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNS 1371 SDD GR + Y + G+ FE G PESFNV+VKE+++L L + L++ + S Sbjct: 1333 SDDTSPGRRPRVPYSESY--YIKGDSNFECGIPESFNVMVKELRSLCLDVVLKHDKEFTS 1390 Query: 1372 AKME 1375 + +E Sbjct: 1391 SNVE 1394 >gi|330814205|ref|YP_004358444.1| DNA-directed RNA polymerase beta subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487300|gb|AEA81705.1| DNA-directed RNA polymerase beta subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 1259 Score = 1434 bits (3713), Expect = 0.0, Method: Composition-based stats. Identities = 716/1259 (56%), Positives = 951/1259 (75%), Gaps = 2/1259 (0%) Query: 106 LRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHF 165 +RL+ +D++E K I KEQ +YM D+PLMT+ GTFV+ G R+VV+Q+HRSPG+ Sbjct: 1 MRLVAYDINEEAQTKQILSAKEQEVYMSDVPLMTEKGTFVVNGTDRVVVNQMHRSPGLFL 60 Query: 166 DHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS 225 DHDKG+ SGKLL+ CR+IP +G W+D+E+D KDI++ RIDR+RK+PVT+ LMALG Sbjct: 61 DHDKGKGHSSGKLLFNCRVIPYRGSWLDLEYDIKDILYFRIDRKRKIPVTTLLMALGHAK 120 Query: 226 EEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLL 285 +E+L+ F+ I + + C A +K+ L++ DT ++V++ G K+ L Sbjct: 121 DELLNLFHKSIRFDFTNENTCKTKFIASGYKNSKIRFDLINADTNKKVVKEGTKIPLPLA 180 Query: 286 KSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIP 345 +++G+K + I + L G Y + DI+N +TGE+Y E+GD I ++LE++ H I+ Sbjct: 181 MKFEKEGLKNILINFEELHGRYFSSDIINEKTGEVYFESGDEITVETLEKLNHLNIKTFY 240 Query: 346 ILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDK 405 + +D +N +Y+RNTLV DKN + +A +DIYRV+RPG+ T + ++FN LFF++ + Sbjct: 241 LADIDGMNIGSYLRNTLVVDKNNNSDEACMDIYRVLRPGEPPTPETSRNLFNNLFFNNTR 300 Query: 406 YDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVR 465 YDLS VGRVK+N +L+LD + KEDI+ I++ ++ L++GK DDID+LGNRRVR Sbjct: 301 YDLSDVGRVKLNSKLDLDVDVKNTVLTKEDILRIVEKMLRLKDGKEDTDDIDHLGNRRVR 360 Query: 466 SVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQL 525 SVGE+++NQ+R+GL+RMER+IKE++SSV+ID+VMPQDLIN+KP+ +++ EFF +SQLSQ Sbjct: 361 SVGELVENQFRVGLVRMERAIKEKMSSVEIDTVMPQDLINSKPIAASLKEFFGTSQLSQF 420 Query: 526 EEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSS 585 + N L+ ITH RR+SALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++S Sbjct: 421 MDQTNPLAEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINS 480 Query: 586 LTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELV 645 L ++++VN YGFIE+PYR V + KVT ++ +LSAMEE IAQANSSL +D SF +ELV Sbjct: 481 LATYSKVNRYGFIESPYRVVKNSKVTKEIHHLSAMEEGKFTIAQANSSLKDDSSFKDELV 540 Query: 646 FCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 CR + L + ID++D SPKQVVS+AA+LIPFLENDD+NR LMG NM RQAVPL+K Sbjct: 541 SCRKSLGFELAKPDNIDYMDVSPKQVVSVAAALIPFLENDDANRALMGSNMMRQAVPLIK 600 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 E+P VGTGME VA SGA IVAKR G+VE++D RIV+++ D + S VDIY L Sbjct: 601 NESPLVGTGMEKDVALDSGATIVAKREGVVEKIDGKRIVVKATSE-KDLTISSVDIYNLQ 659 Query: 766 KFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 KFQRSNQNTC NQRPLVKVGD V++ D+IADGPST G+LALG+N++VAFMPW GYNFED Sbjct: 660 KFQRSNQNTCTNQRPLVKVGDVVKQGDVIADGPSTQFGELALGKNVMVAFMPWLGYNFED 719 Query: 826 SMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVG 885 S+LISER VSEDVFTSIHIEE++VMARDTKLGPEEITRDIPN SEE L+N+DE GI+ VG Sbjct: 720 SILISERCVSEDVFTSIHIEEYDVMARDTKLGPEEITRDIPNTSEEALRNLDESGIVYVG 779 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 AEV PGDILVGK+TPKG++ +T EEKLLRAIFGEKA+DVRDTSL++PSG GTVV+VR+F Sbjct: 780 AEVKPGDILVGKLTPKGDTKVTSEEKLLRAIFGEKAIDVRDTSLKMPSGTGGTVVEVRVF 839 Query: 946 NRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKS 1005 NRHGI+K+ER++S+E+ +IE + DK E+ IL+ NI SR +EIL G + K K Sbjct: 840 NRHGIEKDERALSIEKAEIESVLEDKYAEEAILELNIKSRAIEILEGSSLGDDYKKITKG 899 Query: 1006 TVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD 1065 T L+ +++SE + + + EK ++ LK QY +K +E RF +KI+KI+ GD+ Sbjct: 900 TKLTKEILSELTLGETLKLSTDSEKSLSDLAILKEQYSKAKKDIELRFDDKIDKIERGDE 959 Query: 1066 MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPL 1125 + PGV+++VKVFVAMKR +Q GDKMAGRHGNKG++SRI+P EDMP++ +G VDIVLNPL Sbjct: 960 LLPGVMKMVKVFVAMKRKLQPGDKMAGRHGNKGVISRIVPVEDMPYMANGKQVDIVLNPL 1019 Query: 1126 GVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY-KANGDISPLRSFLEKVIGTGSHTEK 1184 GVPSRMNVGQI ETHLGWAC LG+KIK ++++Y K + + + L + ++ Sbjct: 1020 GVPSRMNVGQILETHLGWACSELGEKIKKILDEYQKTTKNAAHTKDALSSIYNDKEIEKE 1079 Query: 1185 ISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 I ++ ++ + V + SGVP++TPVFDGA E + ML+ + L ESGQ+ LYDG TGE Sbjct: 1080 IQNFTNNELKDVLQNLSSGVPIATPVFDGASVEDVTDMLKFSGLPESGQTTLYDGRTGEK 1139 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 FDR VTVG IYMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++A Sbjct: 1140 FDREVTVGIIYMLKLYHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1199 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 YGAAY LQE+LT+KSDDV GRT+VYE+IV G+D FE+G PESFNVLVKE+++L L+++L Sbjct: 1200 YGAAYTLQEILTVKSDDVAGRTKVYETIVKGDDDFESGIPESFNVLVKEIRSLALNLEL 1258 >gi|195973818|gb|ACG63474.1| DNA-directed RNA polymerase subunit beta [Francisella philomiragia] Length = 1306 Score = 1432 bits (3707), Expect = 0.0, Method: Composition-based stats. Identities = 654/1318 (49%), Positives = 905/1318 (68%), Gaps = 14/1318 (1%) Query: 34 KASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLW 93 SY FL + R + GL+ K FP+ + +G L +V Y+ P FD +C Sbjct: 1 TESYRKFLNAD-DAKGRLHSGLELVLKQSFPVESKNGQYELHYVDYQIGEPTFDETECQV 59 Query: 94 RDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIV 153 R TY PL + LRL+V++ + K ++DI+E+ +YMGD+PLMT +GTF+I G +R+V Sbjct: 60 RGATYDAPLNVKLRLVVYNKEALPSEKVVEDIREEYVYMGDIPLMTTNGTFIINGTERVV 119 Query: 154 VSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVP 213 VSQLHRSPG+ F D ++ RIIP +G W+D EFDSK II RIDR+RK Sbjct: 120 VSQLHRSPGVFFSKDDSEEGA-----FSARIIPYRGSWLDFEFDSKGIIWARIDRKRKFC 174 Query: 214 VTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQV 273 T L ALG EEIL+ F S + L M G + ++D + Sbjct: 175 ATVILKALGYTQEEILNRFSDSKTISFNNKGFALKLDDLSSMKGEVLKFDIIDEKD-NTI 233 Query: 274 IESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSL 333 ++ KKLTS +K +K+ GV + I D + L VA+DIVN TGE+ A D + E L Sbjct: 234 VKKNKKLTSRDIKKIKDAGVDSVAIDFDLVSTLRVAKDIVNEATGEVIAYANDDVTENLL 293 Query: 334 EEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAE 393 E + + ++ ++ + YI +TL D K+ +AL++IY+V+RPGD + + Sbjct: 294 EACVEAGMLELEVIDFITTERGRYISDTLKYDLTKNTDEALVEIYKVLRPGDPPAAASVK 353 Query: 394 SMFNFLFFDSDKYDLSTVGRVKMNMRLNLD-TPDDVRHIRKEDIIAIIKILVDLRNGKGT 452 ++F LFF +Y LS +GR+K+N RL D D+ + DI+ +I+ L+++R+GKG Sbjct: 354 ALFEGLFFIESRYSLSDIGRMKLNARLGSDNVSKDIYTLENSDIVGVIEELINIRDGKGK 413 Query: 453 IDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSA 512 +DDID+LGNRRVRSVGEM++NQ+R+GL R+E+ I+E +S V D +MP+D++N+KP+ +A Sbjct: 414 VDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRESMSLVHKDKLMPKDIVNSKPITAA 473 Query: 513 VCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPA 572 + EFF S LSQ + N LS +TH RR+SALG GG++R RAG E+RDVH THYGR+CP Sbjct: 474 IKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGLSRDRAGFEVRDVHATHYGRLCPI 533 Query: 573 ETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANS 632 ET EG NIGL++SL S+ARVN YGF+E PYRKV +GKVTN++ YLSA++E++ IAQA++ Sbjct: 534 ETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVNGKVTNEIEYLSAIDEDHYVIAQAST 593 Query: 633 SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM 692 LD++ F E+L+ CR GE I ++ ++D S KQ+VS AA+LIPFLE+DD+NRVLM Sbjct: 594 KLDKNNHFVEDLIQCRSGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANRVLM 653 Query: 693 GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDL 752 G NMQRQAVP LK+E P VGTGME +VA+ SG I+A+ AG + +VD+ RIV++ Sbjct: 654 GANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCIIARNAGEIAEVDSNRIVVKVDTEKS 713 Query: 753 DPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 S VDIY L KF+RSN+NTC+NQRP+V VGD++ DI+ADG +TD G+L+LG N++ Sbjct: 714 KTSKL-VDIYSLTKFKRSNKNTCINQRPIVNVGDKIEAGDILADGFATDFGELSLGHNLM 772 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW+GYNFEDS+L+SER+V +D +TSIHIEEF +ARDTKLGPEE+T DIPNVSE Sbjct: 773 VAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTCVARDTKLGPEEVTADIPNVSESS 832 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L +DE GI+ +GA V GDILV KITPK E +TPEE+LLRAIF EKA +V D+SLR+P Sbjct: 833 LAKLDESGIVHIGANVEAGDILVAKITPKAEQQLTPEERLLRAIFNEKASNVADSSLRMP 892 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 SG SGTV++V++F K++R++ +E+E I+ +D D+E +++ + S + + G Sbjct: 893 SGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARKDFDEEFAVIESVVKSSIETDVIG 952 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 KG KK VL+ + ++ P S+W + + +DEK+++ V++ + YE +K ++ R Sbjct: 953 AKIQKA-KGLKKGAVLTKEFLATLPFSKWLEISFEDEKLEQKVQNAREYYEEAKIAVDAR 1011 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 F+ K + I +++ PGVL+ VKVFVA+K+ IQ GDKMAGRHGNKG+VSR+LP EDMP++ Sbjct: 1012 FEAKKKSIMQSNELSPGVLKTVKVFVAIKKRIQPGDKMAGRHGNKGVVSRVLPVEDMPYM 1071 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 +DGTPVD+ LNPLG+PSRMN+GQI E HLG A GLGKKI+ + + + LR L Sbjct: 1072 EDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGKKIEQTL---EKTRKAAELRKTL 1128 Query: 1173 EKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES 1231 E+V + G + +D+ +L + E K GVP++TPVFDGA EE I S+L++ + Sbjct: 1129 EEVYNSVGDKKVDLKALNDEEILNLCENLKGGVPIATPVFDGAKEEDIKSLLKIGGFATN 1188 Query: 1232 GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGG 1291 GQ L+DG TG+PFDR VTVGY+YMLKL+H+V DK++ARSTGSYSLVTQQPLGGK+ GG Sbjct: 1189 GQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1248 Query: 1292 QRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 QR GEMEVW +QAYGAAY L+EMLT+KSDD+ GR+++Y++IV G T PESFNV Sbjct: 1249 QRFGEMEVWALQAYGAAYTLREMLTVKSDDITGRSKMYKNIVDGKLTMNVDVPESFNV 1306 >gi|195973814|gb|ACG63472.1| DNA-directed RNA polymerase subunit beta [Francisella philomiragia] Length = 1306 Score = 1432 bits (3706), Expect = 0.0, Method: Composition-based stats. Identities = 654/1318 (49%), Positives = 906/1318 (68%), Gaps = 14/1318 (1%) Query: 34 KASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLW 93 SY FL + R + GL+ K FP+ + +G L +V Y+ P FD +C Sbjct: 1 TESYRKFLNAD-DAKGRLHSGLELVLKQSFPVESKNGQYELHYVDYQIGEPTFDETECQV 59 Query: 94 RDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIV 153 R TY PL + LRL+V++ + K ++DI+E+ +YMGD+PLMT +GTF+I G +R+V Sbjct: 60 RGATYDAPLNVKLRLVVYNKEALPSEKVVEDIREEYVYMGDIPLMTTNGTFIINGTERVV 119 Query: 154 VSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVP 213 VSQLHRSPG+ F D ++ RIIP +G W+D EFDSK II RIDR+RK Sbjct: 120 VSQLHRSPGVFFSKDDSEEGA-----FSARIIPYRGSWLDFEFDSKGIIWARIDRKRKFC 174 Query: 214 VTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQV 273 T L ALG EEIL+ F S + L M G + ++D + Sbjct: 175 ATVILKALGYTQEEILNRFSDSKTISFNNKGFALKLDDLSSMKGEVLKFDIIDEKD-NTI 233 Query: 274 IESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSL 333 ++ KKLTS +K +K+ GV + I D + L VA+DIVN TGE+ A D + E L Sbjct: 234 VKKNKKLTSRDIKKIKDAGVDSVAIDFDLVSTLRVAKDIVNEATGEVIAYANDDVTENLL 293 Query: 334 EEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAE 393 E + + ++ ++ + YI +TL D K+ +AL++IY+V+RPGD + + Sbjct: 294 EACVEAGMLELEVIDFITTERGRYISDTLKYDLTKNTDEALVEIYKVLRPGDPPAAASVK 353 Query: 394 SMFNFLFFDSDKYDLSTVGRVKMNMRLNLD-TPDDVRHIRKEDIIAIIKILVDLRNGKGT 452 ++F LFF +Y LS +GR+K+N RL D D+ + DI+ +I+ L+++R+GKG Sbjct: 354 ALFEGLFFIESRYSLSDIGRMKLNARLGSDNVSKDIYTLENSDIVGVIEELINIRDGKGK 413 Query: 453 IDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSA 512 +DDID+LGNRRVRSVGEM++NQ+R+GL R+E+ I+E +S V D +MP+D++N+KP+ +A Sbjct: 414 VDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRESMSLVHKDKLMPKDIVNSKPITAA 473 Query: 513 VCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPA 572 + EFF S LSQ + N LS +TH RR+SALG GG++R RAG E+RDVH THYGR+CP Sbjct: 474 IKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGLSRDRAGFEVRDVHATHYGRLCPI 533 Query: 573 ETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANS 632 ET EG NIGL++SL S+ARVN YGF+E PYRKV +GKVTN++ YLSA++E++ IAQA++ Sbjct: 534 ETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVNGKVTNEIEYLSAIDEDHYVIAQAST 593 Query: 633 SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM 692 LD++ F E+L+ CR GE I ++ ++D S KQ+VS AA+LIPFLE+DD+NRVLM Sbjct: 594 KLDKNNHFVEDLIQCRSGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANRVLM 653 Query: 693 GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDL 752 G NMQRQAVP LK+E P VGTGME +VA+ SG I+A+ AG + +VD+ RIV++ Sbjct: 654 GANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCIIARNAGEIAEVDSNRIVVKVDTEKS 713 Query: 753 DPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 S VDIY L KF+RSN+NTC+NQRP+V VGD++ DI+ADG +TD G+L+LG N++ Sbjct: 714 KTSKL-VDIYSLTKFKRSNKNTCINQRPIVNVGDKIEAGDILADGFATDFGELSLGHNLM 772 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW+GYNFEDS+L+SER+V +D +TSIHIEEF +ARDTKLGPEE+T DIPNVSE Sbjct: 773 VAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTCVARDTKLGPEEVTADIPNVSESS 832 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L +DE GI+ +GA V GDILV KITPK E +TPEE+LLRAIF EKA +V D+SLR+P Sbjct: 833 LAKLDESGIVHIGANVEAGDILVAKITPKAEQQLTPEERLLRAIFNEKASNVADSSLRMP 892 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 SG SGTV++V++F K++R++ +E+E I+ +D D+E +++ + S + + G Sbjct: 893 SGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARKDFDEEFAVIESVVKSSIETDVIG 952 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 KG KK VL+ + ++ P S+W + + +DEK+++ V++ + YE +K ++ R Sbjct: 953 AKIQKA-KGLKKGAVLTKEFLATLPFSKWLEISFEDEKLEQKVQNAREYYEEAKIAVDAR 1011 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 F+ K + I +++ PGVL+ VKVFVA+K+ IQ GDKMAGRHGNKG+VSR+LP EDMP++ Sbjct: 1012 FEAKKKSIMQSNELSPGVLKTVKVFVAIKKRIQPGDKMAGRHGNKGVVSRVLPVEDMPYM 1071 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 +DGTPVD+ LNPLG+PSRMN+GQI E HLG A GLGKKI+ + + ++ LR L Sbjct: 1072 EDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGKKIEQTL---EKTRKVAELRKTL 1128 Query: 1173 EKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES 1231 E+V + G + +D+ +L + E K GVP++TPVFDGA EE I S+L++ + Sbjct: 1129 EEVYNSVGDKKVDLKALNDEEILNLCENLKGGVPIATPVFDGAKEEDIKSLLKIGGFATN 1188 Query: 1232 GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGG 1291 GQ L+DG TG+PFDR VTVGY+YMLKL+H+V DK++ARSTGSYSLVTQQPLGGK+ GG Sbjct: 1189 GQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1248 Query: 1292 QRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 QR GEMEVW +QAYGAAY L+EMLT+KSDD+ GR+++Y++IV G T PESFNV Sbjct: 1249 QRFGEMEVWALQAYGAAYTLREMLTVKSDDITGRSKMYKNIVDGKLTMNVDVPESFNV 1306 >gi|195973812|gb|ACG63471.1| DNA-directed RNA polymerase subunit beta [Francisella philomiragia] Length = 1306 Score = 1431 bits (3705), Expect = 0.0, Method: Composition-based stats. Identities = 654/1318 (49%), Positives = 905/1318 (68%), Gaps = 14/1318 (1%) Query: 34 KASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLW 93 SY FL + R + GL+ K FP+ + +G L +V Y+ P FD +C Sbjct: 1 TESYRKFLNAD-DAKGRLHSGLELVLKQSFPVESKNGQYELHYVDYQIGEPTFDETECQV 59 Query: 94 RDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIV 153 R TY PL + LRL+V++ + K ++DI+E+ +YMGD+PLMT +GTF+I G +R+V Sbjct: 60 RGATYDAPLNVKLRLVVYNKEALPSEKVVEDIREEYVYMGDIPLMTTNGTFIINGTERVV 119 Query: 154 VSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVP 213 VSQLHRSPG+ F D ++ RIIP +G W+D EFDSK II RIDR+RK Sbjct: 120 VSQLHRSPGVFFSKDDSEEGA-----FSARIIPYRGSWLDFEFDSKGIIWARIDRKRKFC 174 Query: 214 VTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQV 273 T L ALG EEIL+ F S + L M G + ++D + Sbjct: 175 ATVILKALGYTQEEILNRFSDSKTISFNNKGFALKLDDLSSMKGEVLKFDIIDEKD-NTI 233 Query: 274 IESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSL 333 ++ KKLTS +K +K+ GV + I D + L VA+DIVN TGE+ A D + E L Sbjct: 234 VKKNKKLTSRDIKKIKDAGVGSVAIDFDLVSTLRVAKDIVNEATGEVIAYANDDVTENLL 293 Query: 334 EEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAE 393 E + + ++ ++ + YI +TL D K+ +AL++IY+V+RPGD + + Sbjct: 294 EACVEAGMLELEVIDFITTERGRYISDTLKYDLTKNTDEALVEIYKVLRPGDPPAAASVK 353 Query: 394 SMFNFLFFDSDKYDLSTVGRVKMNMRLNLD-TPDDVRHIRKEDIIAIIKILVDLRNGKGT 452 ++F LFF +Y LS +GR+K+N RL D D+ + DI+ +I+ L+++R+GKG Sbjct: 354 ALFEGLFFIESRYSLSDIGRMKLNARLGSDNVSKDIYTLENSDIVGVIEELINIRDGKGK 413 Query: 453 IDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSA 512 +DDID+LGNRRVRSVGEM++NQ+R+GL R+E+ I+E +S V D +MP+D++N+KP+ +A Sbjct: 414 VDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRESMSLVHKDKLMPKDIVNSKPITAA 473 Query: 513 VCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPA 572 + EFF S LSQ + N LS +TH RR+SALG GG++R RAG E+RDVH THYGR+CP Sbjct: 474 IKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGLSRDRAGFEVRDVHATHYGRLCPI 533 Query: 573 ETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANS 632 ET EG NIGL++SL S+ARVN YGF+E PYRKV +GKVTN++ YLSA++E++ IAQA++ Sbjct: 534 ETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVNGKVTNEIEYLSAIDEDHYVIAQAST 593 Query: 633 SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM 692 LD++ F E+L+ CR GE I ++ ++D S KQ+VS AA+LIPFLE+DD+NRVLM Sbjct: 594 KLDKNNHFVEDLIQCRSGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANRVLM 653 Query: 693 GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDL 752 G NMQRQAVP LK+E P VGTGME +VA+ SG I+A+ AG + +VD+ RIV++ Sbjct: 654 GANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCIIARNAGEIAEVDSNRIVVKVDTEKS 713 Query: 753 DPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 S VDIY L KF+RSN+NTC+NQRP+V VGD++ DI+ADG +TD G+L+LG N++ Sbjct: 714 KTSKL-VDIYSLTKFKRSNKNTCINQRPIVNVGDKIEAGDILADGFATDFGELSLGHNLM 772 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW+GYNFEDS+L+SER+V +D +TSIHIEEF +ARDTKLGPEE+T DIPNVSE Sbjct: 773 VAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTCVARDTKLGPEEVTADIPNVSESS 832 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L +DE GI+ +GA V GDILV KITPK E +TPEE+LLRAIF EKA +V D+SLR+P Sbjct: 833 LAKLDESGIVHIGANVESGDILVAKITPKAEQQLTPEERLLRAIFNEKASNVADSSLRMP 892 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 SG SGTV++V++F K++R++ +E+E I+ +D D+E +++ + S + + G Sbjct: 893 SGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARKDFDEEFAVIESVVKSSIETDVIG 952 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 KG KK VL+ + ++ P S+W + + +DEK+++ V++ + YE +K ++ R Sbjct: 953 AKIQKA-KGLKKGAVLTKEFLATLPFSKWLEISFEDEKLEQKVQNAREYYEEAKIAVDAR 1011 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 F+ K + I +++ PGVL+ VKVFVA+K+ IQ GDKMAGRHGNKG+VSR+LP EDMP++ Sbjct: 1012 FEAKKKSIMQSNELSPGVLKTVKVFVAIKKRIQPGDKMAGRHGNKGVVSRVLPVEDMPYM 1071 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 +DGTPVD+ LNPLG+PSRMN+GQI E HLG A GLGKKI+ + + + LR L Sbjct: 1072 EDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGKKIEQTL---EKTRKAAELRKTL 1128 Query: 1173 EKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES 1231 E+V + G + +D+ +L + E K GVP++TPVFDGA EE I S+L++ + Sbjct: 1129 EEVYNSVGDKKVDLKALNDEEILNLCENLKGGVPIATPVFDGAKEEDIKSLLKIGGFATN 1188 Query: 1232 GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGG 1291 GQ L+DG TG+PFDR VTVGY+YMLKL+H+V DK++ARSTGSYSLVTQQPLGGK+ GG Sbjct: 1189 GQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1248 Query: 1292 QRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 QR GEMEVW +QAYGAAY L+EMLT+KSDD+ GR+++Y++IV G T PESFNV Sbjct: 1249 QRFGEMEVWALQAYGAAYTLREMLTVKSDDITGRSKMYKNIVDGKLTMNVDVPESFNV 1306 >gi|195973810|gb|ACG63470.1| DNA-directed RNA polymerase subunit beta [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 1306 Score = 1431 bits (3705), Expect = 0.0, Method: Composition-based stats. Identities = 653/1318 (49%), Positives = 904/1318 (68%), Gaps = 14/1318 (1%) Query: 34 KASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLW 93 SY FL + R + GL+ K FP+ + +G L +V Y+ P FD +C Sbjct: 1 TESYRKFLNAD-DAKGRLHSGLELVLKQSFPVESKNGQYELHYVDYQIGEPTFDETECQV 59 Query: 94 RDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIV 153 R TY PL + LRL+V++ + K ++DI+E+ +YMGD+PLMT +GTF+I G +R+V Sbjct: 60 RGATYDAPLNVKLRLVVYNKEALPSEKVVEDIREEYVYMGDIPLMTTNGTFIINGTERVV 119 Query: 154 VSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVP 213 VSQLHRSPG+ F D ++ RIIP +G W+D EFDSK II RIDR+RK Sbjct: 120 VSQLHRSPGVFFSKDDSEEGA-----FSARIIPYRGSWLDFEFDSKGIIWARIDRKRKFC 174 Query: 214 VTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQV 273 T L ALG EEIL+ F S + L M G + ++D + Sbjct: 175 ATVILKALGYTQEEILNRFSDSKTISFNNKGFALKLDDLSSMKGEVLKFDIIDEKD-NTI 233 Query: 274 IESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSL 333 ++ KKLTS +K +K+ GV + I D + L VA+DIVN TGE+ A D + E L Sbjct: 234 VKKNKKLTSRDIKKIKDAGVDSVAIDFDLVGTLRVAKDIVNEATGEVIAYANDDVTENLL 293 Query: 334 EEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAE 393 E + + ++ ++ + YI +T D K+ +AL++IY+V+RPGD + + Sbjct: 294 EACVEAGMLELEVIDFITTERGRYISDTRKYDLTKNTDEALVEIYKVLRPGDPPAAASVK 353 Query: 394 SMFNFLFFDSDKYDLSTVGRVKMNMRLNLD-TPDDVRHIRKEDIIAIIKILVDLRNGKGT 452 ++F LFF +Y LS +GR+K+N RL D D+ + DI+ +I+ L+++R+GKG Sbjct: 354 ALFEGLFFIESRYSLSDIGRMKLNARLGSDNVSKDIYTLENSDIVGVIEELINIRDGKGK 413 Query: 453 IDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSA 512 +DDID+LGNRRVRSVGEM++NQ+R+GL R+E+ I+E +S V D +MP+D++N+KP+ +A Sbjct: 414 VDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRESMSLVHKDKLMPKDIVNSKPITAA 473 Query: 513 VCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPA 572 + EFF S LSQ + N LS +TH RR+SALG GG++R RAG E+RDVH THYGR+CP Sbjct: 474 IKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGLSRDRAGFEVRDVHATHYGRLCPI 533 Query: 573 ETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANS 632 ET EG NIGL++SL S+ARVN YGF+E PYRKV +GKVTN++ YLSA++E++ IAQA++ Sbjct: 534 ETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVNGKVTNEIEYLSAIDEDHYVIAQAST 593 Query: 633 SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM 692 LD++ F E+L+ CR GE I ++ ++D S KQ+VS AA+LIPFLE+DD+NRVLM Sbjct: 594 KLDKNNHFVEDLIQCRSGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANRVLM 653 Query: 693 GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDL 752 G NMQRQAVP LK+E P VGTGME +VA+ SG I+A+ AG + +VD+ RIV++ Sbjct: 654 GANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCIIARNAGEIAEVDSNRIVVKVDTEKS 713 Query: 753 DPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 S VDIY L KF+RSN+NTC+NQRP+V VGD++ DI+ADG +TD G+L+LG N++ Sbjct: 714 KTSKL-VDIYSLTKFKRSNKNTCINQRPIVNVGDKIEAGDILADGFATDFGELSLGHNLM 772 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW+GYNFEDS+L+SER+V +D +TSIHIEEF +ARDTKLGPEE+T DIPNVSE Sbjct: 773 VAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTCVARDTKLGPEEVTADIPNVSESS 832 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L +DE GI+ +GA V GDILV KITPK E +TPEE+LLRAIF EKA +V D+SLR+P Sbjct: 833 LAKLDESGIVHIGANVEAGDILVAKITPKAEQQLTPEERLLRAIFNEKASNVADSSLRMP 892 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 SG SGTV++V++F K++R++ +E+E I+ +D D+E +++ + S + + G Sbjct: 893 SGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARKDFDEEFAVIESVVKSSIETDVIG 952 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 KG KK VL+ + ++ P S+W + + +DEK+++ V++ + YE +K ++ R Sbjct: 953 AKIQKA-KGLKKGAVLTKEFLATLPFSKWLEISFEDEKLEQKVQNAREYYEEAKIAVDAR 1011 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 F+ K + I +++ PGVL+ VKVFVA+K+ IQ GDKMAGRHGNKG+VSR+LP EDMP++ Sbjct: 1012 FEAKKKSIMQSNELSPGVLKTVKVFVAIKKRIQPGDKMAGRHGNKGVVSRVLPVEDMPYM 1071 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 +DGTPVD+ LNPLG+PSRMN+GQI E HLG A GLGKKI+ + + + LR L Sbjct: 1072 EDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGKKIEQTL---EKTRKAAELRKTL 1128 Query: 1173 EKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES 1231 E+V + G + +D+ +L + E K GVP++TPVFDGA EE I S+L++ + Sbjct: 1129 EEVYNSVGDKKVDLKALNDEEILNLCENLKGGVPIATPVFDGAKEEDIKSLLKIGGFATN 1188 Query: 1232 GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGG 1291 GQ L+DG TG+PFDR VTVGY+YMLKL+H+V DK++ARSTGSYSLVTQQPLGGK+ GG Sbjct: 1189 GQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1248 Query: 1292 QRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 QR GEMEVW +QAYGAAY L+EMLT+KSDD+ GR+++Y++IV G T PESFNV Sbjct: 1249 QRFGEMEVWALQAYGAAYTLREMLTVKSDDITGRSKMYKNIVDGKLTMNVDVPESFNV 1306 >gi|195973816|gb|ACG63473.1| DNA-directed RNA polymerase subunit beta [Francisella philomiragia] Length = 1306 Score = 1431 bits (3705), Expect = 0.0, Method: Composition-based stats. Identities = 654/1318 (49%), Positives = 904/1318 (68%), Gaps = 14/1318 (1%) Query: 34 KASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLW 93 SY FL + R + GL+ K FP+ + +G L +V Y+ P FD +C Sbjct: 1 TESYRKFLNAD-DAKGRLHSGLELVLKQSFPVESKNGQYELHYVDYQIGEPTFDETECQV 59 Query: 94 RDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIV 153 R TY PL + LRL+V++ + K ++DI+E+ +YMGD+PLMT +GTF+I G +R+V Sbjct: 60 RGATYDAPLNVKLRLVVYNKEALPSEKVVEDIREEYVYMGDIPLMTTNGTFIINGTERVV 119 Query: 154 VSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVP 213 VSQLHRSPG+ F D ++ RIIP +G W+D EFDSK II RIDR+RK Sbjct: 120 VSQLHRSPGVFFSKDDSEEGA-----FSARIIPYRGSWLDFEFDSKGIIWARIDRKRKFC 174 Query: 214 VTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQV 273 T L ALG EEIL+ F S + L M G + ++D + Sbjct: 175 ATVILKALGYTQEEILNRFSDSKTISFNNKGFALKLDDLSSMKGEVLKFDIIDEKD-NTI 233 Query: 274 IESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSL 333 ++ KKLTS +K +K+ GV + I D L VA+DIVN TGE+ A D + E L Sbjct: 234 VKKNKKLTSRDIKKIKDAGVDSVAIDFDLFSTLRVAKDIVNEATGEVIAYANDHVTENLL 293 Query: 334 EEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAE 393 E + + ++ ++ + YI +TL D K+ +AL++IY+V+RPGD + + Sbjct: 294 EACAEAGMLELEVIDFITTERGRYISDTLKYDLTKNTDEALVEIYKVLRPGDPPAAASVK 353 Query: 394 SMFNFLFFDSDKYDLSTVGRVKMNMRLNLD-TPDDVRHIRKEDIIAIIKILVDLRNGKGT 452 ++F LFF +Y LS +GR+K+N RL D D+ + DI+ +I+ L+++R+GKG Sbjct: 354 ALFEGLFFIESRYSLSDIGRMKLNARLGSDNVSKDIYTLENSDIVGVIEELINIRDGKGK 413 Query: 453 IDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSA 512 +DDID+LGNRRVRSVGEM++NQ+R+GL R+E+ I+E +S V D +MP+D++N+KP+ +A Sbjct: 414 VDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRESMSLVHKDKLMPKDIVNSKPITAA 473 Query: 513 VCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPA 572 + EFF S LSQ + N LS +TH RR+SALG GG++R RAG E+RDVH THYGR+CP Sbjct: 474 IKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGLSRDRAGFEVRDVHATHYGRLCPI 533 Query: 573 ETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANS 632 ET EG NIGL++SL S+ARVN YGF+E PYRKV +GKVTN++ YLSA++E++ IAQA++ Sbjct: 534 ETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVNGKVTNEIEYLSAIDEDHYVIAQAST 593 Query: 633 SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM 692 LD++ F E+L+ CR GE I ++ ++D S KQ+VS AA+LIPFLE+DD+NRVLM Sbjct: 594 KLDKNNHFVEDLIQCRSGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANRVLM 653 Query: 693 GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDL 752 G NMQRQAVP LK+E P VGTGME +VA+ SG I+A+ AG + +VD+ RIV++ Sbjct: 654 GANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCIIARNAGEIAEVDSNRIVVKVDTEKS 713 Query: 753 DPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 S VDIY L KF+RSN+NTC+NQRP+V VGD++ DI+ADG +TD G+L+LG N++ Sbjct: 714 KTSKL-VDIYSLTKFKRSNKNTCINQRPIVNVGDKIEAGDILADGFATDFGELSLGHNLM 772 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW+GYNFEDS+L+SER+V +D +TSIHIEEF +ARDTKLGPEE+T DIPNVSE Sbjct: 773 VAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTCVARDTKLGPEEVTADIPNVSESS 832 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L +DE GI+ +GA V GDILV KITPK E +TPEE+LLRAIF EKA +V D+SLR+P Sbjct: 833 LGKLDESGIVHIGANVEAGDILVAKITPKAEQQLTPEERLLRAIFNEKASNVADSSLRMP 892 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 SG SGTV++V++F K++R++ +E+E I+ +D D+E +++ + S + + G Sbjct: 893 SGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARKDFDEEFAVIESVVKSSIETDVIG 952 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 KG KK VL+ + ++ P S+W + + +DEK+++ V++ + YE +K ++ R Sbjct: 953 AKIQKA-KGLKKGAVLTKEFLATLPFSKWLEISFEDEKLEQKVQNAREYYEEAKIAVDAR 1011 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 F+ K + I +++ PGVL+ VKVFVA+K+ IQ GDKMAGRHGNKG+VSR+LP EDMP++ Sbjct: 1012 FEAKKKSIMQSNELSPGVLKTVKVFVAIKKRIQPGDKMAGRHGNKGVVSRVLPVEDMPYM 1071 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 +DGTPVD+ LNPLG+PSRMN+GQI E HLG A GLGKKI+ + + + LR L Sbjct: 1072 EDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGKKIEQTL---EKTRKAAELRKTL 1128 Query: 1173 EKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES 1231 E+V + G + +D+ +L + E K GVP++TPVFDGA EE I S+L++ + Sbjct: 1129 EEVYNSVGDKKVDLKALNDEEILNLCENLKGGVPIATPVFDGAKEEDIKSLLKIGGFATN 1188 Query: 1232 GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGG 1291 GQ L+DG TG+PFDR VTVGY+YMLKL+H+V DK++ARSTGSYSLVTQQPLGGK+ GG Sbjct: 1189 GQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1248 Query: 1292 QRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 QR GEMEVW +QAYGAAY L+EMLT+KSDD+ GR+++Y++IV G T PESFNV Sbjct: 1249 QRFGEMEVWALQAYGAAYTLREMLTVKSDDITGRSKMYKNIVDGKLTMNVDVPESFNV 1306 >gi|313673488|ref|YP_004051599.1| DNA-directed RNA polymerase subunit beta [Calditerrivibrio nitroreducens DSM 19672] gi|312940244|gb|ADR19436.1| DNA-directed RNA polymerase subunit beta [Calditerrivibrio nitroreducens DSM 19672] Length = 1316 Score = 1429 bits (3700), Expect = 0.0, Method: Composition-based stats. Identities = 658/1367 (48%), Positives = 937/1367 (68%), Gaps = 65/1367 (4%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F K +++++PDL+EVQK SY FL +++ D+R N+GL+ F+ +FPIT F+ A Sbjct: 9 QRVSFSKIKKVLEMPDLVEVQKKSYLDFLQLDVPADKRENKGLEQVFREIFPITDFNETA 68 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY + PK+D + + R +YA PLK+ +RL+ ++ E K + KE +Y+ Sbjct: 69 ILEYISYTIEKPKYDAKESIIRKTSYAAPLKVKVRLVCYENSEDGSEKVVASAKESDVYL 128 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 D+PLMT TF+I G++R++VSQLHRSPGI F+ S+ K L+ RIIP +G W+ Sbjct: 129 CDIPLMTDRATFIINGVERVIVSQLHRSPGIFFEDLTAGKSVVEKHLFGSRIIPYRGSWI 188 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 D EFD+K+ I+VRID++RK+ T L ALG+ ++IL+T+Y V +G + Sbjct: 189 DFEFDTKNFIYVRIDKKRKILATVLLKALGLSEQDILNTYYKTEVVRFKGLNFERYFEPE 248 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 +L+ G + S + D TGE + ++G K++ G+++ L + G+K + + + + AEDI Sbjct: 249 NLI-GRRNSLDIKDEQTGEVIYKAGHKISKGIIRKLTKAGIKKMNCQYEDISETFFAEDI 307 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 V + GE+ ++A I + LE++ ++I + +L +DS ++ IR+ L DK + ++ Sbjct: 308 VTKD-GELLVKANTKISAEILEKLRENDIEEFKVLLIDSKGSDTAIRDMLEADKIESTEE 366 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 ALL+IY+ MRPG+ +T A++ F+ LFF+ KYDLS VGR+K+N RL LD P ++ + Sbjct: 367 ALLEIYKKMRPGEPATVETAKTYFDNLFFNDKKYDLSRVGRLKINKRLKLDKPLELTTLT 426 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 KEDI+ I++L ++R G+ +DDID+LG+RRV++VGE L+N R+G++RME+++KER+S Sbjct: 427 KEDIVETIRVLNNIRLGEDDVDDIDHLGHRRVKAVGEQLQNHIRIGMVRMEKTVKERMSI 486 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 D + PQDL+NAKP+ S++ EFF S QLSQ + N LS ITH RRLSALG GG+ R Sbjct: 487 QDTKDLGPQDLLNAKPLSSSIKEFFGSYQLSQFMDQTNPLSEITHKRRLSALGPGGLNRD 546 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVH +HYGR+CP ET EG NIGL++SLT++ARVN YGFIETPYRKV +G+VT+ Sbjct: 547 RAGFEVRDVHTSHYGRLCPIETPEGPNIGLITSLTTYARVNDYGFIETPYRKVENGRVTD 606 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 +VVY+SA+EEE+ +IAQAN+ LD +G+F E V R GE + V +++I F+D +P Q++ Sbjct: 607 EVVYMSAIEEEDYFIAQANAKLDSEGNFLNEYVIARKKGEIVTVHKDEIQFMDVAPNQII 666 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S++ +LIPFLE+DD+NR LMG NMQRQ VPL++ +AP VGTG+E VA SGA +VAKR+ Sbjct: 667 SVSTALIPFLEHDDANRALMGSNMQRQGVPLIRTDAPIVGTGLERKVAIDSGAVLVAKRS 726 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G+V+ VDA I+I +GD G+D+Y L K++R+NQ+TC+N PLV+ G +V + D Sbjct: 727 GVVQYVDAKTIIIGYTDGD----DFGIDVYELDKYRRTNQDTCINYVPLVQKGQKVEKGD 782 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 IIADGP+TD GDLALGRN++VAFMPW GYN+EDS+L+S+++V ED +TSIHIEEFE+ AR Sbjct: 783 IIADGPATDRGDLALGRNVVVAFMPWMGYNYEDSILVSQKLVKEDAYTSIHIEEFEIEAR 842 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DTKLGPEEITRDIPNVSEE LK++DE GII +GA+V GDILVGK+TPKGES TPEEKL Sbjct: 843 DTKLGPEEITRDIPNVSEEALKDLDESGIIRIGAKVKEGDILVGKVTPKGESQTTPEEKL 902 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 LRAIFGEKA DV+D SLRVPSG+SG V+DV + R G++K++R++ +E+ +++ + R+ Sbjct: 903 LRAIFGEKAGDVKDASLRVPSGISGVVIDVVVMTRRGVEKDDRTVKIEKAELQEIQRNYK 962 Query: 973 DEQVILDRNIYSRLMEILCGQNAVS----GPKGFKKSTVLSSDLISEYPRSQWWQFAVQD 1028 E + LD S + +IL + + FKK + + +++ + ++ V+ Sbjct: 963 IEMLTLDETRKSAIAKILENRKLSKAVTLKGESFKKGSSVPFEILKDLDYTELSGLPVEK 1022 Query: 1029 EKVQRNVESLKVQ-YETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 + Y ++E++FK+K KI+ GD++P GVL+ V+V++A+KR + G Sbjct: 1023 REEIEPEIEKINNKYYAQLKLIEEKFKDKKSKIEKGDELPAGVLKSVRVYLAVKRKLMVG 1082 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRILP +DMP+L +G PV+IVLNPLGVPSRMNVGQ+ ETHLGWA Sbjct: 1083 DKMAGRHGNKGVISRILPEQDMPYLPNGVPVEIVLNPLGVPSRMNVGQVLETHLGWAAKA 1142 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG I + + D DI L Sbjct: 1143 LGLHIATPVFDGAKESDIKELLKKA----------------------------------- 1167 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 G +E+ GQ++LYDG TGE F++ VTVG +Y++KL+H+V K+ Sbjct: 1168 -----GFNED--------------GQTVLYDGRTGERFEQEVTVGVMYVMKLHHLVETKM 1208 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA+ +LQEMLT+KSDDV GRTR Sbjct: 1209 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASNILQEMLTVKSDDVEGRTR 1268 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 VYESIV GN +F+ PESF+VL+KEMQ L L ++L N+ + Sbjct: 1269 VYESIVNGNFSFKPSMPESFHVLIKEMQGLCLDVELVKKEDINNDEN 1315 >gi|253993140|gb|ACT52811.1| DNA-directed RNA polymerase beta chain [Rickettsia sp. SGL01] Length = 1299 Score = 1429 bits (3699), Expect = 0.0, Method: Composition-based stats. Identities = 721/1287 (56%), Positives = 968/1287 (75%), Gaps = 7/1287 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY FL +NI ER N+GLQ+ S+FPI+ Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYKKNFLQLNIKDSERKNKGLQSILNSIFPISDSF 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 W+D+EFD+KD+I+ RIDR+RK+ VT+ L A+GM +EEI+ +Y + Y + C Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYVTTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGCAVK 256 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y++ Sbjct: 257 FIPQHITAHRLTSDLVDADTGNVLLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYLS 316 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 ED+ + + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+D Sbjct: 317 EDLRDPASDEVLAKIGEMITSDMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQD 375 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 R+ AL DI+RV+RPG+ + AES+F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 376 REAALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEVT 435 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ ER Sbjct: 436 GLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIER 495 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 +S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG+ Sbjct: 496 MSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGL 555 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 556 SRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDGH 615 Query: 610 VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDASP 668 VT++VVY SA+EE I QANS +D+DG E + CR G ++V ++DFID +P Sbjct: 616 VTDEVVYFSAIEEGKYKIGQANSKVDKDGKLQGEFINCRVEGGNFVMVEPHEVDFIDVTP 675 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA+++ Sbjct: 676 MQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASVL 735 Query: 729 AKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEV 788 A GIVEQVD+ RIVIR++E +D + VDIY L+KFQ+SN NTC+NQ+PLVKVG V Sbjct: 736 ALHDGIVEQVDSNRIVIRTLEQKID-GSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHYV 794 Query: 789 RRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFE 848 ++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEFE Sbjct: 795 KKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEFE 854 Query: 849 VMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTP 908 V+ARDT+LGPEE+TRDIPNVSEE L+++DE GII VGAEV GDILVGK+TPK ESP+TP Sbjct: 855 VIARDTRLGPEEVTRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPITP 914 Query: 909 EEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLA 968 EEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE LA Sbjct: 915 EEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKLA 974 Query: 969 RDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQD 1028 +D+DDE I++ ++S L ++L GQ V+GPK K ++S+++ + Q+WQ V+D Sbjct: 975 KDRDDELEIIEHFVFSWLEKLLIGQVIVNGPKQVKAGQTITSEMLKGLSKGQFWQLTVED 1034 Query: 1029 EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGD 1088 V +E +KV Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q GD Sbjct: 1035 ANVMNEIEQIKVHYDEKKDALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPGD 1094 Query: 1089 KMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGL 1148 KMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + L Sbjct: 1095 KMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASINL 1154 Query: 1149 GKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 KKI +L+ +YK I ++ FL ++ G I + ++ ++ + GV + Sbjct: 1155 AKKISTLVKEYKNKHIGIEQIKKFLLELYGENI--NYILERSEEEIISFCSKVSKGVHFA 1212 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA + + ML+ AD D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K+ Sbjct: 1213 TPVFDGAKVQDVKDMLKFADQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNKI 1272 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRL 1294 ++RS G YSLVTQQPLGGKS+ GGQR Sbjct: 1273 HSRSIGPYSLVTQQPLGGKSHFGGQRF 1299 >gi|21666266|gb|AAM73633.1|AF389472_1 RNA polymerase beta subunit [Anaplasma marginale] Length = 1381 Score = 1429 bits (3698), Expect = 0.0, Method: Composition-based stats. Identities = 652/1371 (47%), Positives = 924/1371 (67%), Gaps = 31/1371 (2%) Query: 17 FGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEF 76 + K+ + DLI +Q+ SYD F+ ++ G+Q+ F+++FPI G A+LEF Sbjct: 30 YAKSYNSRFLTDLIRIQRDSYDAFIGIDRDGSS----GIQSIFEAMFPIRDLLGKAVLEF 85 Query: 77 VSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAKSIKD 124 V Y P++D +C+ R +T++VP++ITLR +V+ V DE T +S+K Sbjct: 86 VGYNIGEPQYDEYECIKRGITFSVPIRITLRFVVWKVQEVSFKEVKYVVDEDTSERSVKY 145 Query: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRI 184 +KEQ + +GDLP+MT GTF+I GI+R++VSQ+HRSPG+ FD DKG+ SGKL+Y+ R+ Sbjct: 146 MKEQEVSIGDLPMMTSYGTFIINGIERVIVSQMHRSPGVFFDSDKGKTYSSGKLIYSARV 205 Query: 185 IPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDF 244 IP +G W+D EFD KDII+ RID++RK+PV+ L ALGM + +IL FY K++Y++ Sbjct: 206 IPYRGSWLDFEFDIKDIIYFRIDKKRKLPVSYLLKALGMSNNDILDAFYDKVIYTRCDKG 265 Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLC 304 W P D G ++S L+D+D G ++++ ++T + K L G++ + + Sbjct: 266 WRVPFIV-DRFKGVRLSYDLMDVD-GSVLVKANTRITLRIAKKLYADGLREYMVPFSGIT 323 Query: 305 GLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVT 364 G++VA D+V+ +G + + AG+ I + + ++ +I +I L +D + Y+ NTL Sbjct: 324 GMFVAADLVDPSSGAVIVSAGETITSEHIVKLELFDISEIAFLNIDFLTVGPYVLNTLFL 383 Query: 365 DKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDT 424 DKN ++DAL +IYRV+R G+ +S F LFF+S++YDLS VGR+K+N L LD Sbjct: 384 DKNMTQEDALFEIYRVLRSGESPNLDAVKSFFKGLFFESERYDLSVVGRIKLNSHLGLDV 443 Query: 425 PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 ++ + KEDI+ ++K LV LR+G+G +DDID+LGNRRVRSVGE ++NQ+R+G+LR+ER Sbjct: 444 DENTTVLTKEDIVQVVKKLVLLRDGEGVVDDIDHLGNRRVRSVGEFIENQFRIGILRLER 503 Query: 485 SIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSAL 544 I + +SSV+ D+ MP D +N K + + + +FF SSQLSQ + N LS +TH RRLSAL Sbjct: 504 MIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRRLSAL 563 Query: 545 GQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604 G GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +A++N YGFIE+PYRK Sbjct: 564 GPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIESPYRK 623 Query: 605 VCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 V + VT+ V YL AM+E + YIA A +++DE+ F +++++CR G ++V E +D++ Sbjct: 624 VENRVVTDKVEYLLAMQEGDYYIADAGAAIDENNRFVDDMLYCRHGGNFVMVKSEDVDYV 683 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLK+EAP VGTGME VVA SG Sbjct: 684 DVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKSEAPLVGTGMEFVVAAGSG 743 Query: 725 AAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A ++AKR GIV +VD IVIR+ + + D GVDIYRL KFQRSN NTC+NQRP+VK+ Sbjct: 744 AVVLAKRDGIVHRVDGSYIVIRAFDANKDEC-LGVDIYRLRKFQRSNHNTCINQRPVVKL 802 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD V+ ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V DVFTSIHI Sbjct: 803 GDYVKANDLIADGSAIDRGELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFTSIHI 862 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EEFE + RDT E+ + S L ++D + V+ G + Sbjct: 863 EEFECVVRDTLRSREDNAVCLMYESLSHLDDVDRDIVPRYLQVVSGGQGY-----ARPPV 917 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 + PE KLL IFGEK D D+SL +P V GTV+DV +F R G+++N+RS+ +++ +I Sbjct: 918 SLPPETKLLVTIFGEKVFDCVDSSLYLPPDVEGTVIDVHVFVRRGVEENDRSLLIKQSEI 977 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQF 1024 +++D E ++ + L ++L K +E W Sbjct: 978 SSFVKERDYEIDVVSEYFHDELRKLLRNAGVKV------KGYSDLDSFFAEASDDTLWST 1031 Query: 1025 AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPI 1084 + D KV V+ ++ ++++ +F+ K++K+ +G D+P GVL +VKVFVA+K + Sbjct: 1032 GLADAKVAAKVKDMRERFDSIVGEAHRKFEQKVDKLNYGYDLPQGVLTIVKVFVAVKHNL 1091 Query: 1085 QSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWA 1144 Q GDKMAGRHGNKG++SRI+P EDMP L+DGTPVDI+LN LGVPSRMN+GQI ETHLGWA Sbjct: 1092 QPGDKMAGRHGNKGVISRIVPAEDMPHLEDGTPVDIILNSLGVPSRMNIGQILETHLGWA 1151 Query: 1145 CVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGV 1204 V LGKKI +++ I+ LR FL+K+ I+ +++L A + + GV Sbjct: 1152 AVNLGKKIGRILDKGGP-SMIADLRDFLDKIYDGQKLKSDIASMSSEALLVFANRLRKGV 1210 Query: 1205 PVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVS 1264 P++ PVF+G + I+ +L +A++D SGQ LYDG G+ FDR +TVGYIYMLKL+H+V Sbjct: 1211 PMAAPVFEGPKDAQISKLLELAEVDPSGQVYLYDGRLGKKFDRKITVGYIYMLKLHHLVD 1270 Query: 1265 DKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVG 1324 DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDD+VG Sbjct: 1271 DKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDIVG 1330 Query: 1325 RTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 R ++YESI+ G+ FE G PESFNV+VKE+++L L++ L+ + S ++E Sbjct: 1331 RVKIYESIIKGDSNFECGIPESFNVMVKELRSLCLNVVLKQDKEFTSGEVE 1381 >gi|140063973|gb|ABO82472.1| RNA polymerase B' subunit [Candidatus Liberibacter asiaticus] Length = 1258 Score = 1427 bits (3693), Expect = 0.0, Method: Composition-based stats. Identities = 1257/1258 (99%), Positives = 1257/1258 (99%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK Sbjct: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK Sbjct: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY Sbjct: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ Sbjct: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS Sbjct: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN Sbjct: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL Sbjct: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL Sbjct: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR Sbjct: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET Sbjct: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK Sbjct: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA Sbjct: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT Sbjct: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP Sbjct: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE Sbjct: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ Sbjct: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM Sbjct: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH Sbjct: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWACVGLGKKIK LINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW Sbjct: 1141 LGWACVGLGKKIKGLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK Sbjct: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 >gi|195973822|gb|ACG63476.1| DNA-directed RNA polymerase subunit beta [Francisella noatunensis] gi|198417153|gb|ACH87847.1| RpoB [Francisella noatunensis subsp. noatunensis] Length = 1306 Score = 1424 bits (3685), Expect = 0.0, Method: Composition-based stats. Identities = 650/1318 (49%), Positives = 904/1318 (68%), Gaps = 14/1318 (1%) Query: 34 KASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLW 93 SY FL + R + GL+ K FP+ + +G L +V Y+ P FD +C Sbjct: 1 TESYRKFLNAD-DAKGRLHSGLELVLKQSFPVESKNGQYELHYVDYQIGEPTFDETECQV 59 Query: 94 RDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIV 153 R TY PL + LRL++++ + K ++DI+E+ +YMGD+PLMT +GTF+I G +R+V Sbjct: 60 RGATYDAPLNVKLRLVIYNKEILPSEKVVEDIREEYVYMGDIPLMTTNGTFIINGTERVV 119 Query: 154 VSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVP 213 VSQLHRSPG+ F D ++ RIIP +G W+D EFDSK II RIDR+RK Sbjct: 120 VSQLHRSPGVFFSKDDSEEGA-----FSARIIPYRGSWLDFEFDSKGIIWARIDRKRKFC 174 Query: 214 VTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQV 273 T L ALG EEIL+ F + S + L M G + ++D + Sbjct: 175 ATVILKALGYTQEEILNRFSDRRTISFNNKGFALKLDDLSSMKGEVLKFDIIDEKD-NII 233 Query: 274 IESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSL 333 ++ KKLTS +K +K+ GV + I D + L VA+DIVN TGE+ A D + E L Sbjct: 234 VKKNKKLTSRDIKKIKDSGVDSVAIDFDLVSTLRVAKDIVNEATGEVIAYANDDVTENLL 293 Query: 334 EEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAE 393 E + + ++ ++ + YI +TL D K+ +AL++IY+V+RPGD + + Sbjct: 294 EACVEAGMLELEVIDFITTERGRYISDTLKYDLTKNTDEALVEIYKVLRPGDPPAEASVK 353 Query: 394 SMFNFLFFDSDKYDLSTVGRVKMNMRLNLD-TPDDVRHIRKEDIIAIIKILVDLRNGKGT 452 ++F LFF +Y LS +GR+K+N RL D D+ + DI+ +I+ L+++R+GKG Sbjct: 354 ALFEGLFFIESRYSLSDIGRMKLNARLGSDNVSKDIYTLENSDIVGVIEELINIRDGKGK 413 Query: 453 IDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSA 512 +DDID+LGNRRVRSVGEM++NQ+R+GL R+E+ I+E +S V D +MP+D++N+KP+ +A Sbjct: 414 VDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRESMSLVHKDKLMPKDIVNSKPITAA 473 Query: 513 VCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPA 572 + EFF S LSQ + N LS +TH RR+SALG GG++R RAG E+RDVH THYGR+CP Sbjct: 474 IKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGLSRDRAGFEVRDVHATHYGRLCPI 533 Query: 573 ETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANS 632 ET EG NIGL++SL S+ARVN YGF+E PYRKV +GKVTN++ YLSA++E++ IAQA++ Sbjct: 534 ETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVNGKVTNEIEYLSAIDEDHYVIAQAST 593 Query: 633 SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM 692 LD++ F E+L+ CR GE I ++ ++D S KQ+VS AA+LIPFLE+DD+NRVLM Sbjct: 594 KLDKNNHFVEDLIQCRSGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANRVLM 653 Query: 693 GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDL 752 G NMQRQAVP LK+E P VGTG+E +VA+ SG I+A+ G + +VD+ RIV++ Sbjct: 654 GANMQRQAVPTLKSEKPLVGTGIEKIVARDSGNCIIARNVGEIAEVDSNRIVVKVDTEKS 713 Query: 753 DPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 S VDIY L KF+RSN+NTC+NQRP+V VGD++ DI+ADG +TD G+L+LG N++ Sbjct: 714 KTSKL-VDIYSLTKFKRSNKNTCINQRPIVNVGDKIEAGDILADGFATDFGELSLGHNLM 772 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW+GYNFEDS+L+SER+V +D +TSIHIEEF +ARDTKLGPEE+T DIPNVSE Sbjct: 773 VAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTCVARDTKLGPEEVTADIPNVSESS 832 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L +DE I+ +GA V GDILV KITPK E +TPEE+LLRAIF EKA +V D+SLR+P Sbjct: 833 LAKLDESSIVHIGANVEAGDILVAKITPKAEQQLTPEERLLRAIFNEKASNVADSSLRMP 892 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 SG SGTV++V++F K++R++ +E+E I+ +D D+E +++ + S + + G Sbjct: 893 SGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARKDFDEEFAVIESVVKSSIETDVIG 952 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 KG KK VL+ + ++ P S+W + + +DEK+++ V++ + YE +K ++ R Sbjct: 953 AKIQKA-KGLKKGAVLTKEFLATLPFSKWLEISFEDEKLEQKVQNAREYYEEAKIAVDAR 1011 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 F+ K + I +++ PGVL+ VKVFVA+K+ IQ GDKMAGRHGNKG+VSR+LP EDMP++ Sbjct: 1012 FEAKKKSIMQSNELSPGVLKTVKVFVAIKKRIQPGDKMAGRHGNKGVVSRVLPVEDMPYM 1071 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 +DGTPVD+ LNPLG+PSRMN+GQI E HLG A GLGKKI+ + + + LR L Sbjct: 1072 EDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGKKIEQTL---EKTRKAAELRKTL 1128 Query: 1173 EKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES 1231 E+V + G + +D+ +L + E K GVP++TPVFDGA EE I S+L++ + Sbjct: 1129 EEVYNSVGDKKVDLKALNDEEILNLCENLKGGVPIATPVFDGAKEEDIKSLLKIGGFATN 1188 Query: 1232 GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGG 1291 GQ L+DG TG+PFDR VTVGY+YMLKL+H+V DK++ARSTGSYSLVTQQPLGGK+ GG Sbjct: 1189 GQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1248 Query: 1292 QRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 QR GEMEVW +QAYGAAY L+EMLT+KSDD+ GR+++Y++IV G T PESFNV Sbjct: 1249 QRFGEMEVWALQAYGAAYTLREMLTVKSDDITGRSKMYKNIVDGKLTMNVDVPESFNV 1306 >gi|237753296|ref|ZP_04583776.1| bifunctional DNA-directed RNA polymerase [Helicobacter winghamensis ATCC BAA-430] gi|229375563|gb|EEO25654.1| bifunctional DNA-directed RNA polymerase [Helicobacter winghamensis ATCC BAA-430] Length = 1974 Score = 1423 bits (3684), Expect = 0.0, Method: Composition-based stats. Identities = 620/1395 (44%), Positives = 908/1395 (65%), Gaps = 36/1395 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+ I +P+L+++Q+ SYD+FLM + GL+ FKS+FPI Sbjct: 10 RLRVDFTKIPQNIAVPNLLQLQRNSYDNFLMT----SDTNESGLEKVFKSIFPIHDAQNR 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+ EF P++ V + + R LTY++PLKI +RL++++ DE TG K +KDIKEQSI Sbjct: 66 ISLEYAGCEFGKPRYTVREAMERGLTYSIPLKIKIRLVLWERDEKTGEKLGVKDIKEQSI 125 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ S S KL+Y +IIPD+G Sbjct: 126 FVREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEES-TSTSNKLVYTGQIIPDRGS 184 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD + VR+++RRKVPVT ALG ++IL FYP + + + P + Sbjct: 185 WLYFEYDAKDTLFVRVNKRRKVPVTILFRALGYSRQDILKMFYPLVNIKYKNGKYLIPFN 244 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 + + +V L D G ++ +GK+LT+ K+L+E+ + + ++ L Y+AE Sbjct: 245 PEEFI--GRVEFDLKDAK-GNLILAAGKRLTAKKAKALEEEKLNMIEYPTEILMNRYLAE 301 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD----- 365 I++ +GE+ +A ++DE L+++ + D I ++ +A I N + D Sbjct: 302 PIIDKASGEVLFDALTLMDESKLKKLTELGVNDFVIANDLALGVDASIINAFIADAESLK 361 Query: 366 -------KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + + A++ IY+VMRPG+ T A+ LFFD D+YDL+ VGR+KMN Sbjct: 362 LLKQTEKIDNENDLAMIRIYKVMRPGEPVTKEAAKQFVQQLFFDPDRYDLTRVGRMKMNH 421 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L++ PD V + EDII ++ L+ ++NG+G IDD D+LGNRR+R++GE+L N+ G Sbjct: 422 KLDIGVPDYVTVLTHEDIIKTVRYLMRVKNGQGRIDDRDHLGNRRIRAIGELLANELHTG 481 Query: 479 LLRMERSIKERISSVDI--DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++I+++++++ + +MP DL+N+K + + EFF QLSQ + N LS +T Sbjct: 482 LVKMQKAIRDKLTTISAGLEELMPHDLVNSKMITGTILEFFTGGQLSQFMDQTNPLSEVT 541 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 542 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLSTYAKVNELG 601 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PYRKV DG+VT+++VYL+A +EE IA A++ L + + EE++ R GE IL+ Sbjct: 602 FIEAPYRKVVDGRVTDEIVYLTATQEEGAVIAPASTILTSNQTIKEEMIEVRKDGEIILM 661 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 +K+D ID SP+ +V +AASLIPFLE+DD+NR LMG NMQRQAVPLLK +AP VGTG+E Sbjct: 662 ESKKVDLIDLSPRMIVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKPDAPVVGTGIE 721 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 +V++ S A A R GIVE+VDA I + + + + +D Y L K R+NQNT Sbjct: 722 KIVSRDSWEATKATRGGIVEKVDAKNIYVLGEDE----NGAFIDHYSLQKNLRTNQNTSF 777 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 +Q P+VK G++V +IADGP+ D G+LALG+N+ VAFMPW+GYNFED++++SE+++ Sbjct: 778 SQCPIVKAGEQVEAGQVIADGPNMDQGELALGKNIRVAFMPWNGYNFEDAIVVSEKLIRN 837 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTSIHI E E+ AR+ K G EEITRDIPN+ EE L ++DE GI+ +G V G ILVG Sbjct: 838 DAFTSIHIYEKEIEARELKHGVEEITRDIPNIREEELAHLDESGIVKIGTYVTGGMILVG 897 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K +PKGE TPEE+LLRAIFGEKA V + SL P + GTVVDV+IF + G DK++R+ Sbjct: 898 KASPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKIFTKKGYDKDKRA 957 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS----GPKGFKKSTVLSSDL 1012 I+ E+ L + D+ ++LDR R+ IL + VS G K +KK +V+ Sbjct: 958 IAAYEEEKSRLDLEHHDKLLMLDREESLRIGSILAKEKLVSVAKIGDKEYKKGSVIPKAD 1017 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + R +++Q + ++LK + K L + K+ I+ D +P GV+ Sbjct: 1018 LENVNRFAMGTLIKSYPKEIQSSYDALKANFLEQKKNLSQEHEEKLSIIEKDDILPSGVV 1077 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VK++VA KR ++ GDKMAGRHGNKGIVS I+P DMP+ KDG PV+IVLNPLGVPSRM Sbjct: 1078 KLVKIYVATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYTKDGRPVEIVLNPLGVPSRM 1137 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE---KISDY 1188 N+GQI E HLG LG++I + I + + + + LRS + ++ + Sbjct: 1138 NIGQILEVHLGLVGKNLGEQI-ANIFEQEKDKWVGALRSKMLEIAENSGMKSAKGFLEKL 1196 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 DD+S+L A W +GV +TPVF+G + + + +A +D G++ LYDG TGE Sbjct: 1197 DDESLLNFARDWSNGVKFATPVFEGVNAQEFEKLFALAKIDTDGKTELYDGRTGEKMMER 1256 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1257 VNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1316 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR + Y++I G E+ PE+F VL KE+Q+L L + + Sbjct: 1317 HTLKEMLTIKSDDVEGRVKAYKAITRGEAVKESEIPETFYVLTKELQSLALDVSVFAKNK 1376 Query: 1369 KNSAKMEEIPDFNKC 1383 + + I + N+ Sbjct: 1377 EGVDEAITIREENRP 1391 >gi|195973824|gb|ACG63477.1| DNA-directed RNA polymerase subunit beta [Francisella noatunensis] Length = 1306 Score = 1421 bits (3677), Expect = 0.0, Method: Composition-based stats. Identities = 650/1318 (49%), Positives = 902/1318 (68%), Gaps = 14/1318 (1%) Query: 34 KASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLW 93 SY FL + R + GL+ K FP+ + +G L +V Y+ P FD +C Sbjct: 1 TESYRKFLNAD-DAKGRLHSGLELVLKQSFPVESKNGQYELHYVDYQIGEPTFDETECQV 59 Query: 94 RDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIV 153 R TY PL + LRL+V++ + K ++DI+E+ +YMGD+PLMT +GTF+I G +R+V Sbjct: 60 RGATYDAPLNVKLRLVVYNKEILPSEKVVEDIREEYVYMGDIPLMTTNGTFIINGTERVV 119 Query: 154 VSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVP 213 VSQLHRSPG+ F D ++ RIIP +G W+D EFDSK I+ RIDR+RK Sbjct: 120 VSQLHRSPGVFFSKDDSEEGA-----FSARIIPYRGSWLDFEFDSKGIMWARIDRKRKFC 174 Query: 214 VTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQV 273 T L ALG EEIL+ F + L M G + ++D + Sbjct: 175 ATVILKALGYTQEEILNRFSNSRTIGFNNKGFALKLDDLSSMKGEVLKFDIIDEKD-NII 233 Query: 274 IESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSL 333 ++ KKLTS +K +K+ GV + I D + L VA+DIVN TGE+ A D + E L Sbjct: 234 VKKNKKLTSRDIKKIKDAGVDSVAIDFDLVSTLRVAKDIVNEATGEVIAYANDDVTENLL 293 Query: 334 EEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAE 393 E + ++ ++ + YI +TL D K+ +AL++IY+V+RPGD + + Sbjct: 294 EACVEVGMLELEVIDFITTERGRYISDTLKYDLTKNTYEALVEIYKVLRPGDPPAAASVK 353 Query: 394 SMFNFLFFDSDKYDLSTVGRVKMNMRLNLD-TPDDVRHIRKEDIIAIIKILVDLRNGKGT 452 ++F LFF +Y LS +GR+K+N RL D D+ + DI+ +I+ L+++R+GKG Sbjct: 354 ALFEGLFFIESRYSLSDIGRMKLNARLGSDNVSKDIYTLENSDIVGVIEELINIRDGKGK 413 Query: 453 IDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSA 512 +DDID+LGNRRVRSVGEM++NQ+R+GL R+E+ I+E +S V D +MP+D++N+KP+ +A Sbjct: 414 VDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRESMSLVHKDKLMPKDIVNSKPITAA 473 Query: 513 VCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPA 572 + EFF S LSQ + N LS +TH RR+SALG GG++R RAG E+RDVH THYGR+CP Sbjct: 474 IKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGLSRDRAGFEVRDVHATHYGRLCPI 533 Query: 573 ETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANS 632 ET EG NIGL++SL S+ARVN YGF+E PYRKV +GKVTN++ YLSA++E++ IAQA++ Sbjct: 534 ETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVNGKVTNEIEYLSAIDEDHYVIAQAST 593 Query: 633 SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM 692 LD++ F E+L+ CR GE I ++ ++D S KQ+VS AA+LIPFLE+DD+NRVLM Sbjct: 594 KLDKNNHFVEDLIQCRSGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANRVLM 653 Query: 693 GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDL 752 G NMQRQAVP LK+E P VGTG+E +VA+ SG I+A+ AG + +VD+ RIV++ Sbjct: 654 GANMQRQAVPTLKSEKPLVGTGIEKIVARDSGNCIIARNAGEIAEVDSNRIVVKVDTEKS 713 Query: 753 DPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 S VDIY L KF+RSN+NTC+NQRP+V VGD++ DI+ADG +TD G+L+LG N++ Sbjct: 714 KTSKL-VDIYSLTKFKRSNKNTCINQRPIVNVGDKIEAGDILADGFATDFGELSLGHNLM 772 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW+GYNFEDS+L+SER+V +D +TSIHIEEF +ARDTKLGPEE+T DIPNVSE Sbjct: 773 VAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTCVARDTKLGPEEVTADIPNVSESS 832 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L +DE I+ +GA V GDILV KITPK E +TPEE+LLRAIF EKA +V D+SLR+P Sbjct: 833 LAKLDESSIVHIGANVEAGDILVAKITPKAEQQLTPEERLLRAIFNEKASNVADSSLRMP 892 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 SG SGTV++V++F K++R++ +E+E I+ +D D+E +++ + S + + G Sbjct: 893 SGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARKDFDEEFAVIESVVKSSIETDVIG 952 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 KG KK VL+ + ++ P S+W + + +DEK+++ V++ + YE +K ++ R Sbjct: 953 AKIQKA-KGLKKGAVLTKEFLATLPFSKWLEISFEDEKLEQKVQNAREYYEEAKIAVDAR 1011 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 F+ K + I +++ PGVL+ VKVFVA+K+ IQ GDKMAGRHGNKG+VSR+LP EDMP++ Sbjct: 1012 FEAKKKSIMQSNELSPGVLKTVKVFVAIKKRIQPGDKMAGRHGNKGVVSRVLPVEDMPYM 1071 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 +DGTPVD+ LNPLG+PSRMN+GQI E HLG A GLGKKI+ + + + LR L Sbjct: 1072 EDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGKKIEQTL---EKTRKAAELRKTL 1128 Query: 1173 EKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES 1231 E+V + G + +D+ +L + E K GVP++TPVFDGA EE I S+L++ + Sbjct: 1129 EEVYNSVGDKKIDLKALNDEEILNLCENLKGGVPIATPVFDGAKEEDIKSLLKIGGFATN 1188 Query: 1232 GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGG 1291 GQ L+DG TG+PFDR VTVGY+YMLKL+H+V DK++ARSTGSYSLVTQQPLGGK+ GG Sbjct: 1189 GQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1248 Query: 1292 QRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 QR GEMEVW +QAYGAAY L+EMLT+KSDD+ GR+++Y++IV G T PESFNV Sbjct: 1249 QRFGEMEVWALQAYGAAYTLREMLTVKSDDITGRSKMYKNIVDGKLTMNVDVPESFNV 1306 >gi|291286305|ref|YP_003503121.1| DNA-directed RNA polymerase, beta subunit [Denitrovibrio acetiphilus DSM 12809] gi|290883465|gb|ADD67165.1| DNA-directed RNA polymerase, beta subunit [Denitrovibrio acetiphilus DSM 12809] Length = 1331 Score = 1419 bits (3673), Expect = 0.0, Method: Composition-based stats. Identities = 650/1374 (47%), Positives = 925/1374 (67%), Gaps = 65/1374 (4%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 R+ F + ++IDIPDLIEVQ+ SY FL P+ R +GL+ F+ +FPIT Sbjct: 4 TSKPTERRNFSRIQKVIDIPDLIEVQRDSYVDFLQAEYTPETRVVKGLEEVFREIFPITD 63 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 F+ A+LE++SY + K+ + + R T+A PLKI +RL+ +DV+E TG K + KE Sbjct: 64 FNETAVLEYISYSIEKYKYTPGEAIDRSTTFAAPLKIKVRLVTYDVNEETGEKMVVSAKE 123 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 +Y+ D+P+MT GTFVI G++R++V+QLHRSPGI F+ + K L++ RIIP Sbjct: 124 SEVYLCDIPMMTDRGTFVINGVERVIVNQLHRSPGIFFEDLTASKGVMEKHLFSARIIPY 183 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 +G W+D +FDSK+I++VRID++RK+PVT L ALG ++IL T+Y K + F Sbjct: 184 RGSWIDFDFDSKNIMYVRIDKKRKIPVTVLLKALGYTEKDILDTYYTKEKITFDERDRIF 243 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 D+++G + S ++D G V+++ K+T K + + ++ + + + + + Sbjct: 244 KEFNEDIILGLRNSLDILD-KEGNVVVKANHKITKAARKRMVKAEIEKIPVAFEDIEHTF 302 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 AED+V + GE+ IE+ I E+ +++ + IR+ +L++D + +++ +R+ L DK Sbjct: 303 FAEDVVTPD-GEVLIESNTAISEEMFDKLKENNIREFQVLFIDRLTSDSIMRDILAVDKV 361 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 K +++AL+DIY+ +RPG+ +T A+++F+ LFF+ +YDLS VGR+K+N RL LD D Sbjct: 362 KTQEEALIDIYKKLRPGEPATEETAKTLFDNLFFNPKRYDLSKVGRLKINKRLGLDVDLD 421 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 + EDI+ +++L ++R G +DDID+LG+RRVR+ GE L+N R+GL RME+++K Sbjct: 422 TTTLTAEDIVETVRVLENIRKGLDKVDDIDHLGHRRVRAAGEQLQNHIRIGLSRMEKTVK 481 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+S D++ + PQDL+NAKP+ +++ EFF S QLSQ + N LS ITH RRLSALG G Sbjct: 482 ERMSIQDVEDLTPQDLLNAKPLSASIKEFFGSYQLSQFMDQTNPLSEITHKRRLSALGPG 541 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVH +HYGRICP ET EG NIGL++SLT+FA+VN +GFIETPYRKV D Sbjct: 542 GLNRDRAGFEVRDVHTSHYGRICPIETPEGPNIGLITSLTTFAKVNEFGFIETPYRKVHD 601 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 V+NDVVY+SA+EEE+ Y+AQAN+ L+ DG+F + V R G+ +L +E I ++D S Sbjct: 602 CVVSNDVVYMSAIEEEDYYVAQANAPLNPDGTFIRDFVAARYQGDSLLTGKENIQYMDIS 661 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS++A+LIPFLE+DD+NR LMG NMQRQAVPL++ ++P VGTGME VA SGA I Sbjct: 662 PKQIVSVSAALIPFLEHDDANRALMGSNMQRQAVPLVRTDSPIVGTGMEGKVAVDSGAVI 721 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 AKR G++E +D+ +I +R +GD G+D+Y L+K++RSNQ+TC+N +P+VK G++ Sbjct: 722 TAKRPGVIEYIDSAKIAVRYKDGD----DFGLDVYDLVKYRRSNQDTCINYKPIVKPGEK 777 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V + ++A GP+TD G+LALG+NM++AFMPW GYN+EDS+LISE +V ED +TSIHIEEF Sbjct: 778 VEQGAMLAGGPATDNGELALGQNMVLAFMPWMGYNYEDSILISENVVKEDRYTSIHIEEF 837 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E+ ARDTKLGPEEIT DIPNVS+E LK++DE GII +GA V P DILVGK+TPKGE+ T Sbjct: 838 EIEARDTKLGPEEITADIPNVSDEALKDLDESGIIRIGARVKPRDILVGKVTPKGETQAT 897 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D SLRVP ++GTVVDV++ R GI+K+ R+ +E+ + E + Sbjct: 898 PEEKLLRAIFGEKAGDVKDASLRVPPSITGTVVDVQVMTRRGIEKDSRTEIIEKAEYESI 957 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVS----GPKGFKKSTVLSSDLISEYPRSQWWQ 1023 +D + E L+++ ++ L G+ S K T L+++L+ ++ + Q Sbjct: 958 QKDYERELKALEKSRNDQISSFLVGKKLKSDYSNNEIRIAKDTELTAELVKDFLYTDLIQ 1017 Query: 1024 FAVQDEKVQR-NVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + ++ +++S+ QY E+ F++K +K++ GD++P GVL+ VKV+VA+KR Sbjct: 1018 IEINEQSAFEAHIQSVNGQYFVKVQAAEEYFRDKKKKVEKGDELPAGVLKSVKVYVAIKR 1077 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 + GDKMAGRHGNKG+VSRILP EDMP+L DGTPVD+V+NPL VPSRMNVGQ+ E HLG Sbjct: 1078 KLSVGDKMAGRHGNKGVVSRILPAEDMPYLPDGTPVDVVMNPLAVPSRMNVGQVLEVHLG 1137 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA LG K+ + + D DI + Sbjct: 1138 WAGRKLGMKVATEVFDGARESDIKKMLVEAGFQE-------------------------- 1171 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 DG G++ GE F++ VTVG +Y+LKL+H+ Sbjct: 1172 ---------DGQTVL------------YDGRT-------GERFEQEVTVGVMYILKLHHL 1203 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V K++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGAA VLQEMLT+KSDDV Sbjct: 1204 VDTKLHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAANVLQEMLTVKSDDV 1263 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 GRT VYE+IV GN +F PESFNVL+KE+Q L L +DL + +M E Sbjct: 1264 EGRTTVYEAIVNGNFSFTPSMPESFNVLIKELQGLALDMDLLSMDEDGVLQMPE 1317 >gi|195973820|gb|ACG63475.1| DNA-directed RNA polymerase subunit beta [Francisella noatunensis subsp. orientalis] gi|225624847|gb|ACN96558.1| RpoB [Francisella noatunensis subsp. orientalis] Length = 1306 Score = 1418 bits (3670), Expect = 0.0, Method: Composition-based stats. Identities = 650/1318 (49%), Positives = 904/1318 (68%), Gaps = 14/1318 (1%) Query: 34 KASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLW 93 SY FL N R GL+ K FP+ + +G L +V Y+ FD +C Sbjct: 1 TESYKKFLNAN-DAKGRLYSGLELVLKQSFPVESKNGQYELHYVDYQVGESTFDETECQV 59 Query: 94 RDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIV 153 R TY PL + LRL+V++ + G K +++I+E+ +YMGD+PLMT +GTF+I G +R+V Sbjct: 60 RGATYDAPLNVKLRLVVYNKEALPGEKVVENIREEYVYMGDIPLMTTNGTFIINGTERVV 119 Query: 154 VSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVP 213 VSQLHRSPG+ F D S + ++ RIIP +G W+D EFDSK II RIDR+RK Sbjct: 120 VSQLHRSPGVFFSKDD-----SEEGTFSARIIPYRGSWLDFEFDSKGIIWARIDRKRKFC 174 Query: 214 VTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQV 273 T L ALG EEIL+ F S + L M G + ++D + Sbjct: 175 ATVILKALGYTQEEILNKFSDSKTISFNNKGFALKLDDLSNMKGEVLKFDIIDEKD-NTI 233 Query: 274 IESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSL 333 ++ KKLTS +K +K+ GV + I D + L VA+DIVN TGE+ A D + E L Sbjct: 234 VKKNKKLTSRDIKKIKDAGVDSVAIDFDLVSTLRVAKDIVNEVTGEVIAYANDDVTESLL 293 Query: 334 EEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAE 393 E + ++ ++ + YI +TL D K+ +AL++IY+V+RPGD + + Sbjct: 294 ESCVEVGMLELEVIDFITTERGRYISDTLKYDLTKNTDEALVEIYKVLRPGDPPAAASVK 353 Query: 394 SMFNFLFFDSDKYDLSTVGRVKMNMRLNLD-TPDDVRHIRKEDIIAIIKILVDLRNGKGT 452 ++F LFF +Y LS +GR+K+N RL D D+ + DI+ +I+ L+++R+GKG Sbjct: 354 ALFEGLFFIESRYSLSDIGRMKLNARLGSDKVSGDIYTLENSDIVGVIEELINIRDGKGK 413 Query: 453 IDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSA 512 +DDID+LGNRRVRSVGEM++NQ+R+GL R+E+ I+E +S V D +MP+D++N+KP+ +A Sbjct: 414 VDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRESMSLVHKDKLMPKDIVNSKPITAA 473 Query: 513 VCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPA 572 + EFF S LSQ + N LS +TH RR+SALG GG++R RAG E+RDVH THYGR+CP Sbjct: 474 IKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGLSRDRAGFEVRDVHATHYGRLCPI 533 Query: 573 ETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANS 632 ET EG NIGL++SL S+ARVN YGF+E PYR+V +GKVTN++ YLSA++E++ IAQA++ Sbjct: 534 ETPEGPNIGLINSLASYARVNDYGFLEAPYRRVVNGKVTNEIEYLSAIDEDHYVIAQAST 593 Query: 633 SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM 692 LD++ F E+L+ CR GE I ++ ++D S KQ+VS AA+LIPFLE+DD+NRVLM Sbjct: 594 KLDKNNHFVEDLIQCRSGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANRVLM 653 Query: 693 GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDL 752 G NMQRQAVP LK+E P VGTGME +VA+ SG I+A+ AG + +VD+ RIV++ Sbjct: 654 GANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCIIARNAGEIAEVDSNRIVVKVDTEKS 713 Query: 753 DPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 S VDIY L KF+RSN+NTC+NQRP+V VGD++ DI+ADG +TD G+L+LG N++ Sbjct: 714 QTSKL-VDIYSLTKFKRSNKNTCINQRPIVDVGDKIEAGDILADGFATDFGELSLGHNLM 772 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW+GYNFEDS+L+SER+V +D +TSIHIEEF +ARDTKLGPEE+T DIPNVSE Sbjct: 773 VAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTCVARDTKLGPEEVTADIPNVSESS 832 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L +DE GI+ +GA V GDILV KITPK E +TPEE+LLRAIF EKA +V D+SL++P Sbjct: 833 LAKLDESGIVHIGANVEAGDILVAKITPKAEQQLTPEERLLRAIFNEKASNVADSSLKMP 892 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 SG SGTV++V++F K++R++ +E+E I+ +D D+E +++ + S + + G Sbjct: 893 SGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARKDFDEEFAVIESVVKSSIETDVVG 952 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 KG KK VL+ + ++ P S+W + + + EK+++ +++ + YE +K ++ R Sbjct: 953 AKIQKA-KGLKKGAVLTKEFLATLPFSKWLEISFEAEKLEQKIQNAREYYEEAKIAVDAR 1011 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 F+ K + I +++ PGVL+ VKVFVA+K+ IQ GDKMAGRHGNKG+VSR+LP EDMP++ Sbjct: 1012 FEAKKKSITQSNELSPGVLKTVKVFVAIKKRIQPGDKMAGRHGNKGVVSRVLPIEDMPYM 1071 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 +DGTPVD+ LNPLG+PSRMN+GQI E HLG A GLGKK++ + + + LR L Sbjct: 1072 EDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGKKVEQTL---EKTRKAAELRKTL 1128 Query: 1173 EKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES 1231 E+V + G + +D+ +L + E K GVP++TPVFDGA EE I S+L++ + Sbjct: 1129 EEVYNSVGDKKVDLKALNDEEILNLCENLKGGVPIATPVFDGAKEEDIKSLLKIGGFVTN 1188 Query: 1232 GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGG 1291 GQ L+DG TG+PFDR VTVGY+YMLKL+H+V DK++ARSTGSYSLVTQQPLGGK+ GG Sbjct: 1189 GQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1248 Query: 1292 QRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 QR GEMEVW +QAYGAAY L+EMLT+KSDD+ GR+++Y++IV G T PESFNV Sbjct: 1249 QRFGEMEVWALQAYGAAYTLREMLTVKSDDITGRSKMYKNIVDGKLTMNVDVPESFNV 1306 >gi|225874479|ref|YP_002755938.1| DNA-directed RNA polymerase, beta subunit [Acidobacterium capsulatum ATCC 51196] gi|225794200|gb|ACO34290.1| DNA-directed RNA polymerase, beta subunit [Acidobacterium capsulatum ATCC 51196] Length = 1496 Score = 1416 bits (3665), Expect = 0.0, Method: Composition-based stats. Identities = 661/1354 (48%), Positives = 909/1354 (67%), Gaps = 73/1354 (5%) Query: 85 KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTF 144 K+D +C R +T++ PLK+T+RL ++D D TGAK+I+DIKEQ ++ GD+PLMT++GTF Sbjct: 143 KYDQAECEERGMTFSAPLKVTVRLTIYDKDPETGAKTIRDIKEQEVFFGDIPLMTQNGTF 202 Query: 145 VIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHV 204 ++ G +R++VSQLHRSPG+ F+ R GK IIP +G W++ E+D K+ ++V Sbjct: 203 IVNGTERVIVSQLHRSPGVFFETANNRTYFLGK------IIPYRGSWVEFEYDQKNTLYV 256 Query: 205 RIDRRRKVPVTSFLMALGM-DSEEILSTFYPKIVYSQRGDFW---CFPLSAADLMVGAKV 260 RIDR+RK T FL ALG+ EEIL TFY + ++GAK Sbjct: 257 RIDRKRKFLGTIFLRALGLKSDEEILKTFYTVDRIQVKDGKLYWTVAEAGTPTHLLGAKP 316 Query: 261 SSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEI 320 + ++V G++++ SG+K+T+ +LK+++E ++ + I + L G A D+++ ETGE+ Sbjct: 317 AHAVVH--NGQEIVHSGRKITASVLKAIREAKLEQIEIDTTDLDGAMTAADVIDTETGEV 374 Query: 321 YIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRV 380 +EA + L +I + I + + + + + I NTL D + ++AL++IYR Sbjct: 375 LLEANHELTPDKLHKIVEAGIPTVEVFFPERDDVGNIITNTLRRDSVRKPEEALIEIYRK 434 Query: 381 MRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL---DTPDDVRHIRKEDII 437 +RPGD T A ++F +FFD KYD S VGR+K N++L +TP D R + D Sbjct: 435 LRPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLYENAEETPLDHRTLTAGDFY 494 Query: 438 AIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSV-DID 496 + I+ L+ LR G +DDID+LGNRRVR+VGE+++NQ+R+GL+RMER+IKE++S ++ Sbjct: 495 STIRYLLKLRKNIGVVDDIDHLGNRRVRAVGELMENQFRIGLVRMERAIKEKMSVYQEMS 554 Query: 497 SVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGV 556 + MP DLINAKPV++A+ EFF SSQLSQ + N LS ITH RRLSALG GG++R RAG Sbjct: 555 TAMPHDLINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRERAGF 614 Query: 557 EMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVV- 615 E+RDVHPTHYGRICP ET EG NIGL+SSL+ FAR+N YGFIE+PYR+V DG+V + V Sbjct: 615 EVRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRRVRDGQVLDFVAV 674 Query: 616 -----------------------------------------YLSAMEEENRYIAQANSSL 634 YLSA EE+ IAQAN L Sbjct: 675 TNAGESGLRVGDYLEKAEALKLNDKLRAEKKRIIEFEPFSFYLSAWEEDRHTIAQANVKL 734 Query: 635 DEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 DE+ E+LV R G +LV RE++D++D SPKQ+VS+AASL+PFLE+DD+NR LMG Sbjct: 735 DENKHIVEDLVNARRQGNFVLVNREEVDYVDVSPKQLVSVAASLVPFLEHDDANRALMGA 794 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD- 753 NMQRQ+VPLL +EAP VGTGME V A+ SGA I+A+R G+V+ VD+ RI++R Sbjct: 795 NMQRQSVPLLVSEAPLVGTGMEGVTARDSGAVILARRNGVVDSVDSERIIVRVEGEHHPT 854 Query: 754 --PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 G DIY+L+KF+RSNQNTC+NQ+P+V+ GD V + +IADGP T+ G+L LGRN+ Sbjct: 855 QLSREVGSDIYQLIKFKRSNQNTCINQKPIVRKGDRVLKGQVIADGPCTEQGELGLGRNV 914 Query: 812 LVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE 871 LVAFMPW GYNFED++LISE++V ED +TS+HIEEFE+ ARDTKLGPEEITRDIPNVSE Sbjct: 915 LVAFMPWRGYNFEDAILISEKLVKEDYYTSVHIEEFEIEARDTKLGPEEITRDIPNVSEH 974 Query: 872 GLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRV 931 L+++DE GII +GA+V DILVGK+TPKGE+ +TPEEKLLRAIFGEKA DVRD SL Sbjct: 975 ALRDLDESGIIRIGAKVKHNDILVGKVTPKGETQLTPEEKLLRAIFGEKAGDVRDASLTC 1034 Query: 932 PSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILC 991 P G+ GTVVDVRIF+R G +K+ER+ +E EQ+ L ++ +DE IL RL IL Sbjct: 1035 PPGIEGTVVDVRIFSRKGQEKDERAKQIEAEQVAKLEKNLEDEIRILTDERLKRLEAILG 1094 Query: 992 GQNA-------VSGPKGFKKSTVLSSDLISEYPRSQWWQFAV--QDEKVQRNVESLKVQY 1042 G+ + + K VL D I + +D +V ++ ++ Sbjct: 1095 GKVVLADLHDERTNKRLLVKDAVLDRDAIERISTRNLKRIRYADKDPRVNEQIDEIEEMT 1154 Query: 1043 ETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSR 1102 +L +I K+Q GD++ PGV+++VK+++AMKR + GDKMAGRHGNKG+++R Sbjct: 1155 SRQIDVLRKITNERIAKLQKGDELSPGVIKMVKIYIAMKRKLSVGDKMAGRHGNKGVIAR 1214 Query: 1103 ILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKAN 1162 ILP EDMP+L DGTPV+IVLNPLGVPSRMNVGQI ETHLGWA LG ++ +++ K + Sbjct: 1215 ILPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAHDLGVQVAAIV---KQH 1271 Query: 1163 GDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSM 1222 D + +R +++ + ++ + +D+ +LRV G+ T VFDGA EE I ++ Sbjct: 1272 QDANVIREVIKERFKGTAVINQLIELEDEQLLRVGAGMARGIWFGTAVFDGAKEEEIKAL 1331 Query: 1223 LRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQP 1282 L A L SG++ L+DG+TGE F++PVTVG+IYMLKL+H+V DK++ARS G YSL+TQQP Sbjct: 1332 LESAGLPTSGKTKLFDGMTGEAFEQPVTVGFIYMLKLSHLVDDKIHARSIGPYSLITQQP 1391 Query: 1283 LGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETG 1342 LGGK+ GGQR GEMEVW ++AYGAAY+LQE+LT KSDDV GRT++YE+IV G E G Sbjct: 1392 LGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKIYEAIVKGEAAIEPG 1451 Query: 1343 TPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 PESFNVL++E+Q+L L ++L + E+ Sbjct: 1452 VPESFNVLIRELQSLCLDVELIKQAPGAGPEAED 1485 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 35/71 (49%), Positives = 43/71 (60%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R R F K P I IP+LIEVQ+ SY+ FL M+ P ER + GLQ+ F SVFPI F Sbjct: 9 RSRLDFSKIPTSIKIPNLIEVQRRSYERFLQMDKLPTEREDNGLQSVFTSVFPIADFRNI 68 Query: 72 AMLEFVSYEFD 82 + L+FV Y Sbjct: 69 SQLDFVDYSIG 79 >gi|34556892|ref|NP_906707.1| DNA-directed RNA polymerase subunit beta/beta' [Wolinella succinogenes DSM 1740] gi|41017624|sp|Q7MA56|RPOBC_WOLSU RecName: Full=Bifunctional DNA-directed RNA polymerase subunit beta-beta'; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|34482607|emb|CAE09607.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT RPOB [Wolinella succinogenes] Length = 2883 Score = 1415 bits (3663), Expect = 0.0, Method: Composition-based stats. Identities = 627/1403 (44%), Positives = 913/1403 (65%), Gaps = 42/1403 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+ I IP+L+++Q+ SYD FLM P E G++ F+S+FPI Sbjct: 10 RLRVDFTKIPQNIAIPNLLQLQRNSYDSFLM----PIENGESGIEKVFRSIFPIHDAQNR 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+ E+ P++ V + + R LTY+VPLK+ +RL++++ DE TG K +KDIKEQSI Sbjct: 66 ITLEYAGCEYGKPRYTVREAMERGLTYSVPLKVKIRLVLWEKDEKTGEKLGVKDIKEQSI 125 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ S KL+Y +IIPD+G Sbjct: 126 FVREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESAT-SSNKLIYTGQIIPDRGS 184 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD ++VRI++RRKVPVT ALG ++++ TFYP + + P + Sbjct: 185 WLYFEYDAKDTLYVRINKRRKVPVTILFRALGYSKQDVIKTFYPLMKVKAEAGKYLMPFN 244 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 + + ++ + D +G +I +GK+LT K+LKE+G++++ + L ++AE Sbjct: 245 PEEFI--GRIEFDIRDT-SGNLIIGAGKRLTQKRAKTLKEQGLEWVEYPVEILLDRHLAE 301 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 IV+ E+GE+ ++ +DE L++I I++ I + +A I ++ V D Sbjct: 302 PIVDKESGEVILDTLVQLDEGKLKKIHELGIKEFTIANDLAQGVDASIIHSFVADNESLK 361 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 D A + IY+VMRPG+ T A+S LFFD ++YDL+ VGR+KMN Sbjct: 362 LLKQTEKIDDDNDLAAIRIYKVMRPGEPVTKDAAKSFVQQLFFDPERYDLTRVGRMKMNH 421 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L+++ PD V + EDII +K L+ ++NG+G IDD D+LGNRR+R++GE+L N+ G Sbjct: 422 KLDIEVPDYVTVLTHEDIICTVKYLIRVKNGQGHIDDRDHLGNRRIRAIGELLANELHTG 481 Query: 479 LLRMERSIKERISSV--DIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++I+++++++ ++D +MP DL+N+K + S + EFF QLSQ + N LS +T Sbjct: 482 LVKMQKAIRDKLTTMSGNLDELMPHDLVNSKMITSTILEFFTGGQLSQFMDQTNPLSEVT 541 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L+++++VN G Sbjct: 542 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLSTYSKVNDLG 601 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PY+KV +GKVT++VVYL+A +EE IA A++ L+ DG+ E+L+ R GE +L Sbjct: 602 FIEAPYKKVIEGKVTDEVVYLTATQEEGLVIAPASTVLETDGAIKEDLIETRIDGEIVLS 661 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + K+D ID SP VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL +AP VGTGME Sbjct: 662 EKSKVDLIDLSPGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLNPDAPVVGTGME 721 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 VA+ S AI A R GIVE+VDA I I + + + +D Y L K R+NQNTC Sbjct: 722 KTVARDSWEAIKATRGGIVEKVDAKNIYILGEDE----NGAYIDHYSLQKNLRTNQNTCF 777 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 +Q P+V G+ + +IADGP+ D G+LALG+N+ VAFMPW+GYNFED++++SE+++ E Sbjct: 778 SQAPIVHEGETIEAGQVIADGPNMDKGELALGKNIRVAFMPWNGYNFEDAIVVSEKLIRE 837 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTSIHI E E+ AR+ K G EEITRDIPNV EE L ++DE GI+ +G VN G ILVG Sbjct: 838 DTFTSIHIYEKEIEARELKHGVEEITRDIPNVREEELAHLDESGIVKIGTFVNAGMILVG 897 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL P + GTVVDV+IF + G DK++R+ Sbjct: 898 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKIFTKKGYDKDQRA 957 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS----GPKGFKKSTVLSSDL 1012 I+ E+ L + D+ ++LDR RL +L + S K +KK ++ Sbjct: 958 IAAYEEEKARLDLEHHDKLMMLDREEMLRLTSMLSKEPLASDVVVNEKSYKKGELIEKGD 1017 Query: 1013 ISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 +++ R + +Q + LK + K L + + K+ ++ D +P GV+ Sbjct: 1018 LAKINRFAMNALVKSFPKSIQEAYDQLKSNFLEQKKNLSEEHEEKLSVLEKDDILPSGVV 1077 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VK++VA KR ++ GDKMAGRHGNKGIVS I+ DMP+ KDG PV+IVLNPLGVPSRM Sbjct: 1078 KLVKIYVATKRKLKVGDKMAGRHGNKGIVSNIVREIDMPYTKDGEPVEIVLNPLGVPSRM 1137 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT---EKISDY 1188 N+GQI E HLG LG +I + + + + LR+ + ++ T E +S Sbjct: 1138 NIGQILEVHLGLVGKKLGAQINEM-FENQTKDWMGALRAKIIEIAQVSKMTGVDEFVSSL 1196 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+++L A W+ GV +TPVF+G +EE + +A +D G++ LYDG TG Sbjct: 1197 SDEALLSYARDWRRGVKFATPVFEGVNEEEFTKLFELARIDTDGKTELYDGKTGAKMKER 1256 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1257 VNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1316 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLT+KSDDV GR + Y++I G E+ PE+F VL KE+Q+L L + + Sbjct: 1317 HTLKEMLTVKSDDVEGRVKAYKAITRGEPVKESEIPETFYVLTKELQSLALDVTVYGETE 1376 Query: 1369 KN------SAKMEEIPDFNKCEL 1385 ++ + + DFN +L Sbjct: 1377 EDSFVPMPIKEDDRPSDFNAFQL 1399 Score = 40.1 bits (92), Expect = 2.7, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 43/87 (49%) Query: 260 VSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGE 319 ++ L+D+ +++ G+ + G + + + + G VAED+++ T E Sbjct: 2158 LTRKLIDVSQNVKIVMEDCGTHEGVEITDIAIGSELIEPLEERIFGRVVAEDVIDPITNE 2217 Query: 320 IYIEAGDVIDEKSLEEIFHSEIRDIPI 346 I + G +IDE+ ++I + ++ + I Sbjct: 2218 ILVSEGSLIDEEMAKKIKEAGVKAVII 2244 >gi|94971702|ref|YP_593750.1| DNA-directed RNA polymerase subunit beta [Candidatus Koribacter versatilis Ellin345] gi|158564152|sp|Q1IHH4|RPOB_ACIBL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|94553752|gb|ABF43676.1| DNA-directed RNA polymerase subunit beta [Candidatus Koribacter versatilis Ellin345] Length = 1489 Score = 1415 bits (3662), Expect = 0.0, Method: Composition-based stats. Identities = 666/1348 (49%), Positives = 909/1348 (67%), Gaps = 73/1348 (5%) Query: 85 KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTF 144 K+DV +C R +TY+ PLK+T+RL +FD D T ++I+DIKEQ ++ GD+PLMT++GTF Sbjct: 143 KYDVAECEERGMTYSAPLKVTMRLTIFDKDPETNNRTIRDIKEQEVFFGDVPLMTQNGTF 202 Query: 145 VIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHV 204 +I G +R++VSQLHRSPG+ F+ R GK IIP +G W++ E+D K+I++V Sbjct: 203 IINGTERVIVSQLHRSPGVFFETANNRTYFLGK------IIPYRGSWVEFEYDQKNILYV 256 Query: 205 RIDRRRKVPVTSFLMALGM-DSEEILSTFYPKIVYSQRGDFWCFPLSA----ADLMVGAK 259 RIDR+RK T FL ALG+ E+IL TFY + + + L +VG K Sbjct: 257 RIDRKRKFLGTIFLRALGLRTDEDILRTFYTVDRIAVKDKKLYWTLEPGIERPTNLVGLK 316 Query: 260 VSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGE 319 +S ++ GE+V SG+K+T+ +LK +++ + L I L G YVA D+++ TGE Sbjct: 317 LSHAI-KAKNGEEVAHSGRKVTASVLKEIQKHKISELEIELGDLEGAYVASDVIDTNTGE 375 Query: 320 IYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYR 379 + +EA + L ++ + I ++ + + + + I TL D K ++AL++IYR Sbjct: 376 VLLEANQELTADKLSKMIDAGIGEVNVFFPERDDVGTVISATLRRDSVKTPQEALIEIYR 435 Query: 380 VMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP---DDVRHIRKEDI 436 +RPGD T A ++F+ +FFD+ KYD S VGR+K N++L D R + +D Sbjct: 436 KLRPGDPPTLDTATALFHGMFFDARKYDFSRVGRLKFNIKLFDRQDPTGLDKRTLDPDDF 495 Query: 437 IAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSV-DI 495 I+ L+ LR G +DDID+LGNRRVR+VGE+L+NQ+R+GL+RMER+IKE++S ++ Sbjct: 496 YHTIRYLLKLRRNLGAVDDIDHLGNRRVRAVGELLENQFRIGLVRMERAIKEKMSVYQEM 555 Query: 496 DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAG 555 + MP DL+NAKPV++A+ EFF SSQLSQ + N LS ITH RRLSALG GG++R RAG Sbjct: 556 STAMPHDLVNAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRERAG 615 Query: 556 VEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVV 615 E+RDVHPTHYGRICP ET EG NIGL+SSL+ +AR+N YGFIE+PYR+V G+V + V Sbjct: 616 FEVRDVHPTHYGRICPIETPEGPNIGLISSLSCYARINDYGFIESPYRRVKGGRVIDYVQ 675 Query: 616 ------------------------------------------YLSAMEEENRYIAQANSS 633 YLSA EE+ IAQAN+ Sbjct: 676 VTHAGDSDYRVGDKMEKSEAQKANEELRGRKKRGIELEPYSFYLSAWEEDKWTIAQANAE 735 Query: 634 LDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMG 693 LDE G T ELV R AG +L+ R+ ID+ID SPKQ+VS+AASL+PFLE+DD+NR LMG Sbjct: 736 LDEKGKITSELVNARKAGNFVLISRDDIDYIDVSPKQLVSVAASLVPFLEHDDANRALMG 795 Query: 694 CNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV---EG 750 NMQRQ+VPLL+AEAP VGTGME V A+ SGA ++A+R+GI++ VD+ R+++R Sbjct: 796 ANMQRQSVPLLRAEAPIVGTGMEGVTARDSGAVVLARRSGIIDSVDSERVIVRVEGEHHP 855 Query: 751 DLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRN 810 G DIY+L KF+RSNQNTC+NQ+P+VK GD V++ +IADGP TD G+L LGRN Sbjct: 856 MQLSREVGSDIYQLTKFKRSNQNTCINQKPIVKQGDHVKKGQVIADGPCTDHGELGLGRN 915 Query: 811 MLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSE 870 +LV+FMPW GYNFED++L+SE++V ED +TS+HIEEFE+ ARDTKLGPEEITRDIPNVSE Sbjct: 916 VLVSFMPWRGYNFEDAILVSEKLVKEDYYTSVHIEEFEIEARDTKLGPEEITRDIPNVSE 975 Query: 871 EGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLR 930 L+++DE G+I +GA V GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DVRD SL Sbjct: 976 SALRDLDESGVIRIGAPVKAGDILVGKVTPKGETQLTPEEKLLRAIFGEKAGDVRDASLT 1035 Query: 931 VPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEIL 990 P G+ G VVDV+IF+R G +K+ER+ +E QI L ++ DE IL RL +L Sbjct: 1036 CPPGIEGVVVDVKIFSRKGQEKDERAKQIEGTQIAKLEKNLADEIRILTDERLKRLEGLL 1095 Query: 991 CGQNAV-------SGPKGFKKSTVLSSDLISEYPRSQWWQFAV--QDEKVQRNVESLKVQ 1041 + + + K VL + I + +D +V ++ ++ Sbjct: 1096 GAKVVQADLHDERTNKRLLTKDAVLDRETIERISTRNLKRIKYADKDPRVNEQIDEIEEM 1155 Query: 1042 YETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVS 1101 +L + KIEK+Q GD++PPGV+++VKV++AMKR + GDKMAGRHGNKG+++ Sbjct: 1156 TSRQIDVLRKIVREKIEKLQKGDELPPGVIKLVKVYIAMKRKLSVGDKMAGRHGNKGVIA 1215 Query: 1102 RILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKA 1161 RILP EDMP+L+DGTPV+IVLNPLGVPSRMNVGQI ETHLGWA LGKKI Sbjct: 1216 RILPEEDMPYLEDGTPVEIVLNPLGVPSRMNVGQILETHLGWAGHELGKKI---AEFMVE 1272 Query: 1162 NGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINS 1221 N + +R L+++ + + +++ DD+ +L+VA+ + GV + VFDG+ E I S Sbjct: 1273 NSEAGQVRKHLKQLFKDTAFVDHVTELDDEMLLKVAKGMQDGVFFGSAVFDGSTEAEIKS 1332 Query: 1222 MLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQ 1281 +L A L SG++ LYDG+TG+ F++PVTVGYIYMLKL+H+V DK++ARS G YSL+TQQ Sbjct: 1333 LLDQAGLPTSGKTFLYDGMTGDRFEQPVTVGYIYMLKLSHLVDDKIHARSIGPYSLITQQ 1392 Query: 1282 PLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFET 1341 PLGGK+ GGQR GEMEVW ++AYGAAY+LQE+LT KSDDV GRT++YE+IV G E Sbjct: 1393 PLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKIYEAIVKGEAAIEP 1452 Query: 1342 GTPESFNVLVKEMQALGLSIDLENSRTK 1369 G PESFNVL++E+Q+L L ++L ++ K Sbjct: 1453 GVPESFNVLIRELQSLCLDVELIKTKEK 1480 Score = 109 bits (273), Expect = 3e-21, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 9 GLG---RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 R R+ F K P I IP+LIEVQK SYD FL M++ P ER + GLQA F+SVFPI Sbjct: 3 EKKIAFRNRQDFSKIPATIQIPNLIEVQKRSYDRFLQMDLLPSERDDAGLQAVFQSVFPI 62 Query: 66 TAFSGAAMLEFVSYEFD 82 T F + LEFV Y Sbjct: 63 TDFRNVSQLEFVDYAIG 79 >gi|12082654|gb|AAG48562.1|AF236795_1 RNA polymerase beta subunit [Rickettsia felis] Length = 1289 Score = 1409 bits (3646), Expect = 0.0, Method: Composition-based stats. Identities = 712/1278 (55%), Positives = 962/1278 (75%), Gaps = 9/1278 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+RK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DV++C R L+YA PLK+TLRL ++D+DE TG++ IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGSREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S LVD DTG ++++G+K+T L K +G+ + + + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLVDADTGNVLLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + + E+ + G++I L I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPASDEVLAKIGEMITSDMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AE++F LFFD+++YDLS VGR+KMN RL L+ ++V Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAENLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEV 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I+++LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ E Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V D Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDR 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +D+DG E + CR G ++V +++DFID + Sbjct: 615 HVTDEVVYLSAIEEGKYKIGQANSKVDKDGKLQGEFINCRVEGGNFVMVEPQEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVEQVD+ RIVIR++E +D + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVEQVDSNRIVIRTLEQKID-GSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV+ARDT+LGPEEITRDIPNVSEE L+++DE GII VGAEV GDILVGK+TPK ESP+T Sbjct: 854 EVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPIT 913 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFGEKA DV+D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE L Sbjct: 914 PEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKL 973 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 A+D+DDE I++ ++S L ++L GQ V+GPK K ++S+++ + Q+WQ V+ Sbjct: 974 AKDRDDELEIIEHFVFSWLEKLLIGQVIVNGPKQVKAGQTITSEMLKGLSKGQFWQLTVE 1033 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D V +E +KV Y+ K L+ RF K+EK+Q GDD+P G L+VVKVF+A K +Q G Sbjct: 1034 DANVMNEIEQIKVHYDEKKDALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPG 1093 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+PSRMN+GQI ETHLGWA + Sbjct: 1094 DKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASIN 1153 Query: 1148 LGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 L KKI +L+ +YK I ++ FL ++ G I + ++ ++ + GV Sbjct: 1154 LAKKISTLVKEYKNKHIGIEQIKKFLLELYGENI--NYILERSEEEIISFCNKVSKGVHF 1211 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA + + ML++A D SGQ L DG TGE FDR VTVG Y+LKL+H+V +K Sbjct: 1212 ATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNK 1271 Query: 1267 VYARSTGSYSLVTQQPLG 1284 +++RS G YSLVT QPLG Sbjct: 1272 IHSRSIGPYSLVTLQPLG 1289 >gi|242309992|ref|ZP_04809147.1| bifunctional DNA-directed RNA polymerase subunit beta-beta [Helicobacter pullorum MIT 98-5489] gi|239523289|gb|EEQ63155.1| bifunctional DNA-directed RNA polymerase subunit beta-beta [Helicobacter pullorum MIT 98-5489] Length = 2883 Score = 1408 bits (3645), Expect = 0.0, Method: Composition-based stats. Identities = 619/1414 (43%), Positives = 907/1414 (64%), Gaps = 42/1414 (2%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M + R+R F K P+ I +P+L+++Q++SY+ FL + G++ FK Sbjct: 1 MIMPISLKSGNRLRVDFTKIPQNIAVPNLLQLQRSSYEAFL----KSQDNNESGIEKVFK 56 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 S+FPI LE+ E+ P++ V + + R LTY++PLKI +RL++++ DE TG K Sbjct: 57 SIFPIHDTQNRISLEYAGCEYGKPRYTVREAMERGLTYSIPLKIKIRLVLWERDEKTGEK 116 Query: 121 -SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 +KDIKEQ+I++ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ S KL+ Sbjct: 117 LGVKDIKEQNIFVREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESST-ASNKLV 175 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS 239 Y +IIPD+G W+ E+D+KD + VR+++RRK+PVT ALG ++IL FYP + Sbjct: 176 YTGQIIPDRGSWLYFEYDAKDTLFVRVNKRRKIPVTILFRALGYSKQDILKMFYPLLTIK 235 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 + + P + + +V + D G+ ++ +GK+LT+ K+LKE+ + + Sbjct: 236 HKSGKYFIPFDPEEFI--GRVDFDIRDTK-GKLILAAGKRLTAKKAKALKEEKLNMIEYP 292 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 D L Y+AE I++ E+GEI +A ++D+ L+++ I + I + ++ + Sbjct: 293 IDILANRYLAEPIIDKESGEILFDALTLMDDSKLKKLAELGINEFVIANDLASGVDSSVI 352 Query: 360 NTLVTD------------KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYD 407 N + D + + A + IY+VMRPG+ T A+ LFFD ++YD Sbjct: 353 NAFIADAESLKLLKQTEKIDNENDLATIRIYKVMRPGEPVTKEAAKQFVQQLFFDPERYD 412 Query: 408 LSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSV 467 L+ VGR+KMN +L++ PD V + EDII ++ L+ ++NG+G IDD D+LGNRR+R++ Sbjct: 413 LTRVGRMKMNHKLDISVPDYVTVLTHEDIIKTVRYLIHVKNGQGRIDDRDHLGNRRIRAI 472 Query: 468 GEMLKNQYRLGLLRMERSIKERISSVDI--DSVMPQDLINAKPVVSAVCEFFCSSQLSQL 525 GE+L N+ LGL++M+++I++++S++ + +MP DLIN+K + + EFF QLSQ Sbjct: 473 GELLANELHLGLVKMQKAIRDKLSTISSGLEELMPHDLINSKMITGTILEFFTGGQLSQF 532 Query: 526 EEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSS 585 + N LS +TH RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++ Sbjct: 533 MDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINT 592 Query: 586 LTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELV 645 L+++A+VN GFIE PYRKV D KVT+++VYL+A +EE IA A++ L D E+++ Sbjct: 593 LSTYAKVNELGFIEAPYRKVVDKKVTDEIVYLTATQEEGAVIAPASTVLTNDNVIKEDII 652 Query: 646 FCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 R GE IL+ K++ ID SP+ VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL Sbjct: 653 EVRKDGEIILMESSKVELIDLSPRMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLC 712 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 +AP VGTG+E +V++ S ++ A R G+VE+VDA I I + + + +D Y L Sbjct: 713 PDAPVVGTGIEKIVSRDSWESVKATRGGVVEKVDAKNIYILGEDE----NGAFIDHYSLQ 768 Query: 766 KFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 K R+NQNT +Q+P+VK GD V+ D+IADGP+ D G+LALG+N+ VAFMPW+GYNFED Sbjct: 769 KNLRTNQNTSFSQKPIVKAGDVVQAGDVIADGPNMDKGELALGKNIRVAFMPWNGYNFED 828 Query: 826 SMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVG 885 ++++SE+++ D FTSIHI E E+ AR+ K G EEITRDIPN+ EE L ++DE GI+ +G Sbjct: 829 AIVVSEKLICNDAFTSIHIYEKEIEARELKHGVEEITRDIPNIREEELAHLDESGIVKIG 888 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 V G ILVGK +PKGE TPEE+LLRAIFGEKA V + SL P + GTVVDV+IF Sbjct: 889 TYVTGGMILVGKASPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKIF 948 Query: 946 NRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS----GPKG 1001 + G DK++R+I E+ L + D+ ++LDR R+ IL + S G K Sbjct: 949 TKKGYDKDKRAIVAYEEEKARLDLEHHDKLLMLDREESLRIGSILSKEKLASNVKIGDKE 1008 Query: 1002 FKKSTVLSSDLISEYPRSQWWQFAV-QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 +KK +V+ + + R +++Q ++LK + K L + K+ I Sbjct: 1009 YKKGSVIPKEDLENVNRFVMGTIIKGYSKEIQSKYDALKANFLEQKKNLSQEHEEKLSII 1068 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 + D +P GV+++VK++VA KR ++ GDKMAGRHGNKGIVS I+P DMP+ KDG PV+I Sbjct: 1069 EKDDILPSGVVKLVKIYVATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYTKDGRPVEI 1128 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQI E HLG LG++I SL+ + + I LR ++++ T Sbjct: 1129 VLNPLGVPSRMNIGQILEVHLGLVGKNLGEQI-SLVFEEEKGKWIGKLRDKMQEIAETSG 1187 Query: 1181 HTE---KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILY 1237 E ++ D+ +L A W GV +TPVF+G + + + +A +D G++ LY Sbjct: 1188 MKEIKTFLNSLSDEDLLTYARDWSKGVKFATPVFEGVNAKEFEKLFALAKIDSDGKTELY 1247 Query: 1238 DGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEM 1297 DG TGE V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEM Sbjct: 1248 DGRTGEKMMERVNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEM 1307 Query: 1298 EVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQAL 1357 EVW ++AYGAA+ L+EMLTIKSDDV GR + Y++I G E+ PE+F VL KE+Q+L Sbjct: 1308 EVWALEAYGAAHTLKEMLTIKSDDVEGRVKAYKAITRGESVKESEIPETFYVLTKELQSL 1367 Query: 1358 GLSIDLENSRT---KNSAKMEEI---PDFNKCEL 1385 L +++ ++E DFN +L Sbjct: 1368 ALDVNVFAKNKEGVNEPILIKEDNRPSDFNAFQL 1401 Score = 38.5 bits (88), Expect = 7.4, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 42/87 (48%) Query: 260 VSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGE 319 ++ L+D+ +++ G+ + G + + + + G +AE+I++ T E Sbjct: 2162 LTRKLIDVSQNVKIVMDDCGTNEGVEITDITIGSELIESLDERIFGRVIAENIIDPITNE 2221 Query: 320 IYIEAGDVIDEKSLEEIFHSEIRDIPI 346 + I G +IDE+ ++ + ++ + I Sbjct: 2222 VLISEGVLIDEEKARKVKEAGVKSVII 2248 >gi|5813831|gb|AAD52032.1|AF083622_1 RNA polymerase beta subunit [Rickettsia typhi str. Wilmington] Length = 1376 Score = 1408 bits (3645), Expect = 0.0, Method: Composition-based stats. Identities = 685/1376 (49%), Positives = 937/1376 (68%), Gaps = 39/1376 (2%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 RVRK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRVRKNFGHINLVADIPNLIEIQKNSYERNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DVD+C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVDECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS-QRGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ T+ L A+GM++EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYATTLLRAIGMNTEEIMKFYYNSVTYKCIKNKGWSVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S L+D DTG ++++G+K+T L + G+ + +T + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLIDADTGNVLLKAGQKITPRLAQKYFSIGLNNILVTHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + E+ EI + G++I L+ I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPESDEILAKIGEMITADMLQVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD+++YDLS VGR+KMN RL L+ +++ Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEI 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I++ILV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+R+E+S+ E Sbjct: 435 TVLTIDDIKNIVRILVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRIEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +D+DG E + CR G ++V ++DFID + Sbjct: 615 YVTDEVVYLSAIEEGKYKIGQANSKVDQDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K EAPFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTEAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVE+VD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVERVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGI-------------------ICVGAEV 888 EV+ARDT+LG E+ I N + K + GI + Sbjct: 854 EVIARDTRLGGEDFDTRILNHLIDVFKK--DSGIDLSKDPLALQRLKEAAEKAKKELSST 911 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 + DI + IT P K RA + D+ + ++ + D Sbjct: 912 SATDINLPYITADSTGPKHLNIKFTRAELEKLVDDLIEKTIEP---CRPALKDAGFKPTD 968 Query: 949 GIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL 1008 + + L + + + + ++L ++ + + Sbjct: 969 IQEVVLVGGMTRMPTVLLSCFENSLDVNHIQVSFLTKLFHLVQPSYGGVFFQEMNGYLLF 1028 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPP 1068 +S ++ W V +E +K+ Y+ K L+ RF K+EK+Q GDD+P Sbjct: 1029 DVSPLSPVFKTPGW------SNVMNEIEQIKIHYDEKKHALDKRFATKVEKLQSGDDLPQ 1082 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 G L+VVKVF+A K +Q GDKMAGRHGNKG++SRI+P EDMPFL+DGT VDIVLNPLG+P Sbjct: 1083 GALKVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLP 1142 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANG-DISPLRSFLEKVIGTGSHTEKISD 1187 SRMN+GQI ETHLGWA + L KKI +L+ +YK N DI ++ FL ++ G I + Sbjct: 1143 SRMNIGQILETHLGWASINLAKKISTLVKEYKDNNIDIEQIKKFLLELYGKDI--NYILE 1200 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 ++ ++ + GV +TPVFDGA + + ML++AD D SGQ L DG TGE FDR Sbjct: 1201 GSEEGIISFCNKVSKGVYFATPVFDGAKVQDVKDMLKLADQDLSGQVKLIDGRTGEYFDR 1260 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 VTVG+ Y+LKL H+V +K+++RS G YSLVTQQPLG KS+ GGQR GEME W +QAYGA Sbjct: 1261 LVTVGHKYLLKLPHLVDNKIHSRSIGPYSLVTQQPLGSKSHFGGQRFGEMECWALQAYGA 1320 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 AY LQEMLT+KSDDV GR + Y+SIV G + FE+G PESFNV++KE ++L L++ L Sbjct: 1321 AYTLQEMLTVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKL 1376 >gi|299137934|ref|ZP_07031114.1| DNA-directed RNA polymerase, beta subunit [Acidobacterium sp. MP5ACTX8] gi|298599864|gb|EFI56022.1| DNA-directed RNA polymerase, beta subunit [Acidobacterium sp. MP5ACTX8] Length = 1498 Score = 1408 bits (3645), Expect = 0.0, Method: Composition-based stats. Identities = 662/1362 (48%), Positives = 908/1362 (66%), Gaps = 72/1362 (5%) Query: 85 KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTF 144 K+D +C R +TY+ PLK+T+RL ++D D TG KS++D+KEQ ++ GD+PLM+ +GTF Sbjct: 147 KYDQAECEERGMTYSAPLKVTIRLKIYDKDPETGVKSLRDMKEQEVFFGDIPLMSANGTF 206 Query: 145 VIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHV 204 ++ G +R++VSQLHRSPG+ F+ R GK IIP +G W++ E+D K+ ++V Sbjct: 207 IVNGTERVIVSQLHRSPGVFFETANNRTYFLGK------IIPYRGSWVEFEYDQKNTLYV 260 Query: 205 RIDRRRKVPVTSFLMALGM-DSEEILSTFYPKIVYSQRGDFWCFPLSAADL---MVGAKV 260 RIDR+RK T FL ALG+ EEIL TFY + + + + A + +VG + Sbjct: 261 RIDRKRKFLGTIFLRALGLRTDEEILKTFYTVDTINVKDGKLSWTVGAEEKPSHLVGTRS 320 Query: 261 SSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEI 320 +++L D G++++ SGKK+ + LK L+ GV + + + G +A D+++ TGE+ Sbjct: 321 TAALNGAD-GKELVASGKKIGASALKHLRAGGVTSVEVETSEFDGAMIAADVIDMGTGEL 379 Query: 321 YIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRV 380 EA + L +I S + + + + + I NTL D + ++AL++IYR Sbjct: 380 LYEANAELTADKLHKILQSGVATFEVFFPERDDVGNIISNTLRRDSVRKPEEALIEIYRK 439 Query: 381 MRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP---DDVRHIRKEDII 437 +RPGD T A ++F +FFD KYD S VGR+K N++L D D R + ED Sbjct: 440 LRPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLYEDQDPSGLDKRTLTPEDFY 499 Query: 438 AIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSV-DID 496 I+ L+ LR G +DDID+LGNRRVR+VGE+++NQ+R+GL+RMER+IKE++S ++ Sbjct: 500 GTIRYLLKLRKNIGVVDDIDHLGNRRVRAVGELMENQFRIGLVRMERAIKEKMSVYQEMS 559 Query: 497 SVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGV 556 + MP DLINAKPV++A+ EFF SSQLSQ + N LS ITH RRLSALG GG++R RAG Sbjct: 560 TAMPHDLINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRERAGF 619 Query: 557 EMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVV- 615 E+RDVHPTHYGRICP ET EG NIGL+SSL+ FAR+N YGFIE+PYR+V DG+V + V Sbjct: 620 EVRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRRVKDGRVLDYVAV 679 Query: 616 -----------------------------------------YLSAMEEENRYIAQANSSL 634 YLSA EE+ IAQAN L Sbjct: 680 TNAGESGLRQGDFLEISESIKQNKELKKNGKRTMDLEPFSFYLSAWEEDRHTIAQANIEL 739 Query: 635 DEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 D + + E+LV R G +LVP+ ++D++D SPKQ+VS+AASL+PFLE+DD+NR LMG Sbjct: 740 DAELNIVEDLVNARKQGNFVLVPKAEVDYVDVSPKQLVSVAASLVPFLEHDDANRALMGA 799 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD- 753 NMQRQ+VPLL AEAPFVGTGME V A+ SGA I+AKR GI++ VD+ RI++R Sbjct: 800 NMQRQSVPLLVAEAPFVGTGMEGVTARDSGAVILAKRNGIIDSVDSERIIVRVEGEHHPT 859 Query: 754 --PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 G DIY+L KF+RSNQNTC+NQ+P+V+ GD V + +IADGP T+ G+L LGRN+ Sbjct: 860 QLSREVGSDIYQLTKFKRSNQNTCINQKPIVRKGDRVLKGQVIADGPCTEQGELGLGRNV 919 Query: 812 LVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE 871 LVAFMPW GYNFED++LISE++V ED +TSIHIEEFE+ ARDTKLGPEEITRDIPNVSE Sbjct: 920 LVAFMPWRGYNFEDAILISEKLVREDYYTSIHIEEFEIEARDTKLGPEEITRDIPNVSEH 979 Query: 872 GLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRV 931 L+++DE GII +GA++ DILVGK+TPKGE+ +TPEEKLLRAIFGEKA DVRD SL Sbjct: 980 ALRDLDESGIIRIGAKIGHNDILVGKVTPKGETQLTPEEKLLRAIFGEKAGDVRDASLTC 1039 Query: 932 PSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILC 991 P G+ GTVVDVRIF+R G +K++R++ +E+E +E L R+ DE IL RL IL Sbjct: 1040 PPGIEGTVVDVRIFSRKGQEKDQRALQIEQEMVEKLERNLADEIRILTDERLKRLEGILG 1099 Query: 992 G-------QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV--QDEKVQRNVESLKVQY 1042 + + K K +L+ D+I + +D +V ++ ++ Sbjct: 1100 SKEVLADLHDERTNKKLLSKGDILTRDIIELISTRNLKRIRYADKDPRVNEQIDEIEEMT 1159 Query: 1043 ETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSR 1102 +L KI K+Q GD++ PGV+++VKV++AMKR + GDKMAGRHGNKG+++R Sbjct: 1160 SRQIDVLRKITNEKIGKMQKGDELSPGVIKMVKVYIAMKRKLSVGDKMAGRHGNKGVIAR 1219 Query: 1103 ILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKAN 1162 ILP EDMP+L DGTPV+IVLNPLGVPSRMNVGQI ETHLGWA LG K+ +L ++ Sbjct: 1220 ILPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAHELGAKVAALAAQHQ-- 1277 Query: 1163 GDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSM 1222 + +R ++ + ++ DD+ +RVA K G+ T VFDGA E I ++ Sbjct: 1278 -EAGEVREIFKEAFKNTAALNQLLTLDDEQTMRVAAGMKRGIWFGTAVFDGARETEIKAL 1336 Query: 1223 LRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQP 1282 L A L SG+S+++DG+TG+ F++PVTVGYIYMLKL+H+V DK++ARS G YSL+TQQP Sbjct: 1337 LAAAGLPSSGKSMMFDGMTGDQFEQPVTVGYIYMLKLSHLVDDKIHARSIGPYSLITQQP 1396 Query: 1283 LGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETG 1342 LGGK+ GGQR GEMEVW ++AYGAAY+LQE+LT KSDDV GRT++YE+IV G E G Sbjct: 1397 LGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKIYEAIVKGEAAIEPG 1456 Query: 1343 TPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 PESFNVL++E+Q+L L ++L + + +++ +P+ + Sbjct: 1457 VPESFNVLIRELQSLCLDVELVKKTSTDESEVIALPELAVAD 1498 Score = 112 bits (281), Expect = 4e-22, Method: Composition-based stats. Identities = 39/89 (43%), Positives = 48/89 (53%), Gaps = 8/89 (8%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R R F K P I IP+LIEVQ+ SY+ FL M+ P ER + GLQ+ F SVFPIT F Sbjct: 13 RSRLDFSKIPTSIQIPNLIEVQRRSYERFLQMDKLPQEREDNGLQSVFTSVFPITDFRNV 72 Query: 72 AMLEFVSYEFDPPKFDVDDCL---WRDLT 97 + LEFV Y +C + L Sbjct: 73 SELEFVDYSIGN-----WECKCGYLKGLN 96 >gi|224418578|ref|ZP_03656584.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter canadensis MIT 98-5491] Length = 2881 Score = 1408 bits (3644), Expect = 0.0, Method: Composition-based stats. Identities = 612/1403 (43%), Positives = 905/1403 (64%), Gaps = 42/1403 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+ I +P+L+++Q++SY+ FL E G++ FKS+FPI Sbjct: 10 RLRVDFTKIPQNIAVPNLLQLQRSSYEAFLQ----SKENNESGIEKVFKSIFPIHDTQNR 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+ E+ P++ V + + R LTY++PLKI +RL++++ DE TG K IKDIKEQ+I Sbjct: 66 ISLEYAGCEYGKPRYTVREAMERGLTYSIPLKIKIRLVLWERDEKTGEKLGIKDIKEQNI 125 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ S KL+Y +IIPD+G Sbjct: 126 FVREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESST-TSNKLVYTGQIIPDRGS 184 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD + VR+++RRK+PVT ALG ++IL FYP + + + Sbjct: 185 WLYFEYDAKDTLFVRVNKRRKIPVTILFRALGYSKQDILKMFYPSLSVKAKSGKYFIAFD 244 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 + + +V + D G+ ++ +GK+LT+ K+LKE+ + + + L Y+AE Sbjct: 245 PEEFI--GRVDFDIKDSK-GKLILAAGKRLTAKKAKALKEEKINMIEYPVETLVNRYLAE 301 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD----- 365 I++ E+GE+ + ++D+ L+++ I + I + ++ I N + D Sbjct: 302 PIIDKESGEVIFDTLTLMDDSKLKKLAEMGINEFVIANDLANGVDSSIINAFIADAESLK 361 Query: 366 -------KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + + A + IY+VMRPG+ T A+ LFFD ++YDL+ VGR+KMN Sbjct: 362 LLKQTEKIDNENDLATIRIYKVMRPGEPVTKEAAKQFVQQLFFDPERYDLTRVGRMKMNH 421 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L++ PD V + EDII ++ L+ ++NG+G IDD D+LGNRR+R++GE+L N+ G Sbjct: 422 KLDISVPDYVTILTHEDIIKTVRYLIHVKNGQGRIDDRDHLGNRRIRAIGELLANELHTG 481 Query: 479 LLRMERSIKERISSVDI--DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++I++++S++ + +MP DL+N+K + S + EFF QLSQ + N LS +T Sbjct: 482 LVKMQKAIRDKLSTISSGLEELMPHDLVNSKMITSTILEFFTGGQLSQFMDQTNPLSEVT 541 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 542 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLSTYAKVNDLG 601 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PYRKV D KVT+++VYL+A +EE IA A++ L D E+++ R GE IL+ Sbjct: 602 FIEAPYRKVVDKKVTDEIVYLTATQEEGAVIAPASTILTNDNMIKEDIIEVRKDGEIILM 661 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 K++ ID SP+ VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL +AP VGTG+E Sbjct: 662 ESSKVELIDLSPRMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLCPDAPVVGTGIE 721 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 +V++ S ++ A R GIVE+VDA I I + + + +D Y L K R+NQNT Sbjct: 722 KIVSRDSWESLKATRGGIVEKVDAKNIYILGEDE----NGAFIDHYSLQKNLRTNQNTSF 777 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 +Q+P+VK GD + D+IADGP+ D G+LALG+N+ VAFMPW+GYNFED++++SE+++ Sbjct: 778 SQKPIVKAGDVIESGDVIADGPNMDQGELALGKNIRVAFMPWNGYNFEDAIVVSEKLIRN 837 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTSIHI E E+ AR+ K G EEITRDIPN+ EE L ++DE GI+ +G V G ILVG Sbjct: 838 DAFTSIHIYEKEIEARELKHGVEEITRDIPNIREEELAHLDESGIVKIGTYVTGGMILVG 897 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K +PKGE TPEE+LLRAIFGEKA V + SL P + GTV+DV+IF + G DK+ R+ Sbjct: 898 KASPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVIDVKIFTKKGYDKDRRA 957 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQN----AVSGPKGFKKSTVLSSDL 1012 + E+ L + D+ ++LDR R+ IL + G K +KK +V+ + Sbjct: 958 VIAYEEEKARLDLEHHDKLLMLDREESLRIGSILAKEKLIANVKVGDKEYKKGSVIPKEE 1017 Query: 1013 ISEYPRSQWWQFAV-QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + R +++Q + LK + K L + + K+ I+ D +P GV+ Sbjct: 1018 LENVNRFVMGTIIKGYSKEIQSQYDLLKANFLEQKKSLSEEHEEKLSIIEKDDILPSGVV 1077 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VK++VA KR ++ GDKMAGRHGNKGIVS I+P DMP+ KDG PV+IVLNPLGVPSRM Sbjct: 1078 KLVKIYVATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYTKDGRPVEIVLNPLGVPSRM 1137 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI---GTGSHTEKISDY 1188 N+GQI E HLG LG++I + + + + + IS LR ++++ G E ++ Sbjct: 1138 NIGQILEVHLGLVGKKLGEQI-AFVFEQEKSQWISQLREKMQEIAEVSGMKETKEFLASL 1196 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 +D+++L A W GV +TPVF+G + + + +A +D G++ LYDG TGE Sbjct: 1197 NDEALLAYARDWSKGVKFATPVFEGVNAQEFEKLFNLAKIDTDGKTELYDGRTGEKMMER 1256 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1257 VNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1316 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR + Y++I G E+ PE+F VL KE+Q+L L +++ Sbjct: 1317 HTLKEMLTIKSDDVEGRVKAYKAITRGEAVKESEIPETFYVLTKELQSLALDVNVFADNQ 1376 Query: 1369 K---NSAKMEEI---PDFNKCEL 1385 + ++E DFN +L Sbjct: 1377 EGMSEPIVIKEDNRPSDFNAFQL 1399 Score = 38.9 bits (89), Expect = 5.8, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 42/87 (48%) Query: 260 VSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGE 319 ++ L+D+ +++ G+ + G + + + + G +AE+I++ T E Sbjct: 2160 LTRKLIDVSQNVKIVMDDCGTNEGVEITDITVGSELIESLDERIFGRVIAENIIDPITNE 2219 Query: 320 IYIEAGDVIDEKSLEEIFHSEIRDIPI 346 + I G +IDE+ ++ + ++ + I Sbjct: 2220 VLISEGTLIDEEKARKVKEAGVKSVII 2246 >gi|253826871|ref|ZP_04869756.1| DNA-directed RNA polymerase beta subunit rpoB [Helicobacter canadensis MIT 98-5491] gi|313142106|ref|ZP_07804299.1| bifunctional DNA-directed RNA polymerase subunit beta-beta [Helicobacter canadensis MIT 98-5491] gi|253510277|gb|EES88936.1| DNA-directed RNA polymerase beta subunit rpoB [Helicobacter canadensis MIT 98-5491] gi|313131137|gb|EFR48754.1| bifunctional DNA-directed RNA polymerase subunit beta-beta [Helicobacter canadensis MIT 98-5491] Length = 2883 Score = 1407 bits (3643), Expect = 0.0, Method: Composition-based stats. Identities = 612/1403 (43%), Positives = 905/1403 (64%), Gaps = 42/1403 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+ I +P+L+++Q++SY+ FL E G++ FKS+FPI Sbjct: 12 RLRVDFTKIPQNIAVPNLLQLQRSSYEAFLQ----SKENNESGIEKVFKSIFPIHDTQNR 67 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+ E+ P++ V + + R LTY++PLKI +RL++++ DE TG K IKDIKEQ+I Sbjct: 68 ISLEYAGCEYGKPRYTVREAMERGLTYSIPLKIKIRLVLWERDEKTGEKLGIKDIKEQNI 127 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ S KL+Y +IIPD+G Sbjct: 128 FVREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESST-TSNKLVYTGQIIPDRGS 186 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD + VR+++RRK+PVT ALG ++IL FYP + + + Sbjct: 187 WLYFEYDAKDTLFVRVNKRRKIPVTILFRALGYSKQDILKMFYPSLSVKAKSGKYFIAFD 246 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 + + +V + D G+ ++ +GK+LT+ K+LKE+ + + + L Y+AE Sbjct: 247 PEEFI--GRVDFDIKDSK-GKLILAAGKRLTAKKAKALKEEKINMIEYPVETLVNRYLAE 303 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD----- 365 I++ E+GE+ + ++D+ L+++ I + I + ++ I N + D Sbjct: 304 PIIDKESGEVIFDTLTLMDDSKLKKLAEMGINEFVIANDLANGVDSSIINAFIADAESLK 363 Query: 366 -------KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + + A + IY+VMRPG+ T A+ LFFD ++YDL+ VGR+KMN Sbjct: 364 LLKQTEKIDNENDLATIRIYKVMRPGEPVTKEAAKQFVQQLFFDPERYDLTRVGRMKMNH 423 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L++ PD V + EDII ++ L+ ++NG+G IDD D+LGNRR+R++GE+L N+ G Sbjct: 424 KLDISVPDYVTILTHEDIIKTVRYLIHVKNGQGRIDDRDHLGNRRIRAIGELLANELHTG 483 Query: 479 LLRMERSIKERISSVDI--DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++I++++S++ + +MP DL+N+K + S + EFF QLSQ + N LS +T Sbjct: 484 LVKMQKAIRDKLSTISSGLEELMPHDLVNSKMITSTILEFFTGGQLSQFMDQTNPLSEVT 543 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 544 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLSTYAKVNDLG 603 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PYRKV D KVT+++VYL+A +EE IA A++ L D E+++ R GE IL+ Sbjct: 604 FIEAPYRKVVDKKVTDEIVYLTATQEEGAVIAPASTILTNDNMIKEDIIEVRKDGEIILM 663 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 K++ ID SP+ VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL +AP VGTG+E Sbjct: 664 ESSKVELIDLSPRMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLCPDAPVVGTGIE 723 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 +V++ S ++ A R GIVE+VDA I I + + + +D Y L K R+NQNT Sbjct: 724 KIVSRDSWESLKATRGGIVEKVDAKNIYILGEDE----NGAFIDHYSLQKNLRTNQNTSF 779 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 +Q+P+VK GD + D+IADGP+ D G+LALG+N+ VAFMPW+GYNFED++++SE+++ Sbjct: 780 SQKPIVKAGDVIESGDVIADGPNMDQGELALGKNIRVAFMPWNGYNFEDAIVVSEKLIRN 839 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTSIHI E E+ AR+ K G EEITRDIPN+ EE L ++DE GI+ +G V G ILVG Sbjct: 840 DAFTSIHIYEKEIEARELKHGVEEITRDIPNIREEELAHLDESGIVKIGTYVTGGMILVG 899 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K +PKGE TPEE+LLRAIFGEKA V + SL P + GTV+DV+IF + G DK+ R+ Sbjct: 900 KASPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVIDVKIFTKKGYDKDRRA 959 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQN----AVSGPKGFKKSTVLSSDL 1012 + E+ L + D+ ++LDR R+ IL + G K +KK +V+ + Sbjct: 960 VIAYEEEKARLDLEHHDKLLMLDREESLRIGSILAKEKLIANVKVGDKEYKKGSVIPKEE 1019 Query: 1013 ISEYPRSQWWQFAV-QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + R +++Q + LK + K L + + K+ I+ D +P GV+ Sbjct: 1020 LENVNRFVMGTIIKGYSKEIQSQYDLLKANFLEQKKSLSEEHEEKLSIIEKDDILPSGVV 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VK++VA KR ++ GDKMAGRHGNKGIVS I+P DMP+ KDG PV+IVLNPLGVPSRM Sbjct: 1080 KLVKIYVATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYTKDGRPVEIVLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI---GTGSHTEKISDY 1188 N+GQI E HLG LG++I + + + + + IS LR ++++ G E ++ Sbjct: 1140 NIGQILEVHLGLVGKKLGEQI-AFVFEQEKSQWISQLREKMQEIAEVSGMKETKEFLASL 1198 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 +D+++L A W GV +TPVF+G + + + +A +D G++ LYDG TGE Sbjct: 1199 NDEALLAYARDWSKGVKFATPVFEGVNAQEFEKLFNLAKIDTDGKTELYDGRTGEKMMER 1258 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1259 VNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1318 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR + Y++I G E+ PE+F VL KE+Q+L L +++ Sbjct: 1319 HTLKEMLTIKSDDVEGRVKAYKAITRGEAVKESEIPETFYVLTKELQSLALDVNVFADNQ 1378 Query: 1369 K---NSAKMEEI---PDFNKCEL 1385 + ++E DFN +L Sbjct: 1379 EGMSEPIVIKEDNRPSDFNAFQL 1401 Score = 38.9 bits (89), Expect = 5.8, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 42/87 (48%) Query: 260 VSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGE 319 ++ L+D+ +++ G+ + G + + + + G +AE+I++ T E Sbjct: 2162 LTRKLIDVSQNVKIVMDDCGTNEGVEITDITVGSELIESLDERIFGRVIAENIIDPITNE 2221 Query: 320 IYIEAGDVIDEKSLEEIFHSEIRDIPI 346 + I G +IDE+ ++ + ++ + I Sbjct: 2222 VLISEGTLIDEEKARKVKEAGVKSVII 2248 >gi|322434564|ref|YP_004216776.1| DNA-directed RNA polymerase, beta subunit [Acidobacterium sp. MP5ACTX9] gi|321162291|gb|ADW67996.1| DNA-directed RNA polymerase, beta subunit [Acidobacterium sp. MP5ACTX9] Length = 1493 Score = 1397 bits (3615), Expect = 0.0, Method: Composition-based stats. Identities = 655/1342 (48%), Positives = 891/1342 (66%), Gaps = 72/1342 (5%) Query: 85 KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTF 144 K+D +C R +TY+ PLK+T+RL ++D D TG KS++D+KEQ ++ GD+PLM+++GTF Sbjct: 146 KYDQAECEERGMTYSAPLKVTIRLKIYDKDPETGVKSLRDMKEQEVFFGDIPLMSQNGTF 205 Query: 145 VIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHV 204 ++ G +R++VSQLHRSPG+ F+ R GK IIP +G W++ E+D K+ ++V Sbjct: 206 IVNGTERVIVSQLHRSPGVFFETANNRTYFLGK------IIPYRGSWVEFEYDQKNTLYV 259 Query: 205 RIDRRRKVPVTSFLMALGM-DSEEILSTFY--PKIVYSQRGDFWCFPLSAADLMVGAKVS 261 RIDR+RK T FL ALG+ EEIL TFY I ++ W ++G + + Sbjct: 260 RIDRKRKFLGTIFLRALGLRTDEEILKTFYTVDTINVAEGKLTWKVSAEGVTNLLGTRPT 319 Query: 262 SSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIY 321 +++ + E++ +G+K+++ +LK+L+ ++ + + + G A D+V+ TGE+ Sbjct: 320 AAIKN--GAEEIGVAGRKISASVLKALRAAKIETVEVETSEFDGAMTASDVVDLSTGELL 377 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 EA + L +I S + + + + + I NTL D + ++AL++IYR + Sbjct: 378 YEANQELTADKLHKILQSGVSSFELFFPERDDVGNIITNTLRRDSVRKPEEALIEIYRKL 437 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP---DDVRHIRKEDIIA 438 RPGD T A ++F +FFD KYD S VGR+K N++L D D R + ED Sbjct: 438 RPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLYEDQSPAGLDKRTLTPEDFYG 497 Query: 439 IIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSV-DIDS 497 I+ L+ LR G +DDID+LGNRRVR+VGE+++NQ+R+GL+RMER+IKE++S ++ + Sbjct: 498 TIRYLLKLRKNIGVVDDIDHLGNRRVRAVGELMENQFRIGLVRMERAIKEKMSVYQEMST 557 Query: 498 VMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVE 557 MP DLINAKPV++A+ EFF SSQLSQ + N LS ITH RRLSALG GG++R RAG E Sbjct: 558 AMPHDLINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRERAGFE 617 Query: 558 MRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN----- 612 +RDVHPTHYGRICP ET EG NIGL+SSL+ FAR+N YGFIE+PYR+V DG+ + Sbjct: 618 VRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRRVKDGRALDFVAVT 677 Query: 613 -------------DVV------------------------YLSAMEEENRYIAQANSSLD 635 ++ YLSA EE+ IAQAN LD Sbjct: 678 NAGESGLRQGDYLEIEESKAKNEELRAAGKRTMDLEPFSFYLSAWEEDRHTIAQANIQLD 737 Query: 636 EDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCN 695 E + +++V R G +LV + ++D++D SPKQ+VS+AASL+PFLE+DD+NR LMG N Sbjct: 738 EQLNIVQDIVDARRQGNFVLVNKAEVDYVDVSPKQLVSVAASLVPFLEHDDANRALMGAN 797 Query: 696 MQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD-- 753 MQRQ+VPLL AEAPFVGTGME V A+ SGA I+AKR GI++ VD+ RI++R Sbjct: 798 MQRQSVPLLVAEAPFVGTGMEGVTARDSGAVILAKRNGIIDSVDSERIIVRVEGEHHPTQ 857 Query: 754 -PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 G DIY+L KF+RSNQNTC+NQ+P+V+ GD V + +IADGP T+ G+L LGRN+L Sbjct: 858 LSREVGSDIYQLTKFKRSNQNTCINQKPIVRQGDRVLKGQVIADGPCTEQGELGLGRNVL 917 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW GYNFED++LISE++V ED +TSIHIEEFE+ ARDTKLGPEEITRDIPNVSE Sbjct: 918 VAFMPWRGYNFEDAILISEKLVREDYYTSIHIEEFEIEARDTKLGPEEITRDIPNVSEHA 977 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L+++DE GII +GA++ DILVGK+TPKGE+ +TPEEKLLRAIFGEKA DVRD SL P Sbjct: 978 LRDLDESGIIRIGAKIGHNDILVGKVTPKGETQLTPEEKLLRAIFGEKAGDVRDASLTCP 1037 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 G+ GTVVDVRIF+R G +K+ER+ +E+E IE L R+ DE IL RL IL Sbjct: 1038 PGIEGTVVDVRIFSRKGQEKDERAKQIEQEMIEKLERNLADEIRILTDERLKRLEAILGK 1097 Query: 993 -------QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV--QDEKVQRNVESLKVQYE 1043 + + K K +L D+I + +D +V ++ ++ Sbjct: 1098 KEVLADLHDERTNKKLLNKGELLDRDMIELISTRNLKRIRYADKDPRVNEQIDEIEEMTS 1157 Query: 1044 TSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRI 1103 +L KI K+Q GD++ PGV+++VK+++AMKR + GDKMAGRHGNKG+V+RI Sbjct: 1158 RQIDVLRKITNEKISKMQKGDELSPGVIKMVKIYIAMKRRLSVGDKMAGRHGNKGVVARI 1217 Query: 1104 LPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANG 1163 LP EDMP+L DGTPV+IVLNPLGVPSRMNVGQI ETHLGWA LG +I L Sbjct: 1218 LPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAHTLGAQIAELA---SKME 1274 Query: 1164 DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSML 1223 + +R + + ++ D DD+ +RVA K G+ T VFDGA E I ++L Sbjct: 1275 SANEVRELFKARFEGTAALNQLLDLDDEQTMRVAAGMKRGIWFGTAVFDGARETEIKALL 1334 Query: 1224 RMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPL 1283 + A L SG++ LYDG+ G+PF++P TVGYIYMLKL+H+V DK++ARS G YSL+TQQPL Sbjct: 1335 KSAGLPSSGKTQLYDGMLGDPFEQPATVGYIYMLKLSHLVDDKIHARSIGPYSLITQQPL 1394 Query: 1284 GGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGT 1343 GGK+ GGQR GEMEVW ++AYGAAY+LQE+LT KSDDV GRT++YE+IV G E G Sbjct: 1395 GGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVFGRTKIYEAIVKGEAAIEPGV 1454 Query: 1344 PESFNVLVKEMQALGLSIDLEN 1365 PESFNVL++E+Q+L L ++L Sbjct: 1455 PESFNVLIRELQSLCLDVELIK 1476 Score = 112 bits (281), Expect = 3e-22, Method: Composition-based stats. Identities = 39/100 (39%), Positives = 49/100 (49%), Gaps = 10/100 (10%) Query: 3 KGVVFNGLG--RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + R R F K P I IP+LIEVQ+ SY+ FL M+ P ER + GLQ+ F Sbjct: 1 MSDQSTEMRAIRSRLDFSKIPTAIQIPNLIEVQRRSYERFLQMDKLPQEREDNGLQSVFT 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCL---WRDLT 97 SVFPIT F + LEFV Y +C + L Sbjct: 61 SVFPITDFRNVSELEFVDYSIGN-----WECKCGYLKGLN 95 >gi|283362188|dbj|BAI65970.1| partial DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus] gi|283362198|dbj|BAI65979.1| partial DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus] gi|283362208|dbj|BAI65988.1| partial DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus] gi|283362228|dbj|BAI66006.1| partial DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus] Length = 1243 Score = 1394 bits (3607), Expect = 0.0, Method: Composition-based stats. Identities = 1242/1243 (99%), Positives = 1242/1243 (99%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK Sbjct: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK Sbjct: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQSIYMGDLPLMTKDGTFVIKG QRIVVSQLHRSPGIHFDHDKGRASLSGKLLY Sbjct: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGTQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ Sbjct: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS Sbjct: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN Sbjct: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL Sbjct: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL Sbjct: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR Sbjct: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET Sbjct: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK Sbjct: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA Sbjct: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT Sbjct: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP Sbjct: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE Sbjct: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ Sbjct: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM Sbjct: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH Sbjct: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW Sbjct: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE Sbjct: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243 >gi|152990017|ref|YP_001355739.1| DNA-directed RNA polymerase subunit beta [Nitratiruptor sp. SB155-2] gi|182676569|sp|A6Q1M3|RPOB_NITSB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|151421878|dbj|BAF69382.1| DNA-directed RNA polymerase, beta subunit [Nitratiruptor sp. SB155-2] Length = 1386 Score = 1392 bits (3604), Expect = 0.0, Method: Composition-based stats. Identities = 611/1384 (44%), Positives = 903/1384 (65%), Gaps = 34/1384 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+ +D+P+L+++QK+SY++FLM + R N G++ F+SVFPI Sbjct: 10 RLRVDFSKIPQELDVPNLLQLQKSSYENFLMAD--SKSRENSGIEKVFRSVFPIHDPHNR 67 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSI 130 LE+ E PK+ V +C+ R +TY+V LK+ +RLI+++ DE +G K+ +KD+KEQSI Sbjct: 68 ISLEYAGSEIIKPKYTVRECMERGITYSVSLKMNIRLILWERDEKSGEKTGVKDVKEQSI 127 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ D+P MT +F+I G++R+VV+QLHRSPG+ F ++ SG +++ +IIPD+G Sbjct: 128 YVRDIPYMTDRTSFIINGVERVVVNQLHRSPGVIFKEEEAST-SSGTMIHTAQIIPDRGA 186 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D KDI++VRI++RRK+P T ALG +IL FYP + + + Sbjct: 187 WLYFEYDPKDILYVRINKRRKIPSTILFRALGYSKLDILKLFYPITKIIIKENKFFIEFR 246 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D + +V + D + G ++E+GK+LT + L E+GVK++ D L ++A Sbjct: 247 PEDFI--GRVEFDVRD-ENGNLIVEAGKRLTKKKAQKLIEEGVKYIEFPLDVLMDRHLAS 303 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ + +DE L++I I + I+ + + I N+ + D+ Sbjct: 304 PIIDQESGEVLYDTLTQLDEHKLKKILELGIDEFEIVNDIASGKDRAIINSFIADQESLK 363 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ T A++ LFFD ++YD++ VGR+KMN Sbjct: 364 LLKQTEGIEDENDLAAIRIYKVMRPGEPVTKETAKAFIQQLFFDPERYDITRVGRMKMNH 423 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L LD P+ V + EDII ++ L+ ++NG+G IDD D+LGNRR+R++GE+L N+ G Sbjct: 424 KLGLDVPEYVTVLTSEDIIKTVQYLIKVKNGQGHIDDRDHLGNRRIRAIGELLANELHSG 483 Query: 479 LLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++I++++S++ +D +MP DLIN+K + + + EFF + QLSQ + N LS IT Sbjct: 484 LVKMQKAIRDKMSTISGSLDELMPHDLINSKMITNTILEFFATGQLSQFMDQTNPLSEIT 543 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 544 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLSTYAKVNELG 603 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE Y+ V DGK+T+++VYL+A +EE + IA AN+ + + + V R GE ILV Sbjct: 604 FIEAAYKVVKDGKITDEIVYLTAAQEEGKIIAPANTEIIDGNEIKGDYVEARKDGEIILV 663 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + K++ ID +P+ VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL+ EAP VGTGME Sbjct: 664 EKNKVELIDLTPRMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRTEAPIVGTGME 723 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 VVA+ + +I A+R+G+VE++D+ I I + + + +D YRL K R+NQNTC Sbjct: 724 KVVARDAWESIRARRSGVVEKIDSENIYILGEDE----NGAYIDHYRLQKNLRTNQNTCF 779 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q+P+VK G V +I DGP+ D +LALG+NMLVAFMPW+GYNFED++++SER++ + Sbjct: 780 TQKPIVKKGQFVEAGQVITDGPNMDHAELALGKNMLVAFMPWNGYNFEDAIVVSERILRD 839 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEITRDIPNV EE ++++DE GI+ +G V PG ILVG Sbjct: 840 DEFTSVHIYEKEIEARELKHGVEEITRDIPNVKEEEIEHLDESGIVKIGTYVKPGMILVG 899 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE +PEE+LLRAIFGEKA V + SL P + G VVDV+IF + G DK+ R+ Sbjct: 900 KVSPKGEVRPSPEERLLRAIFGEKAGHVVNKSLYCPQSMEGVVVDVKIFTKKGYDKDPRA 959 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSG----PKGFKKSTVLSSDL 1012 I E+ E L+++ D+ +++DR +++ +L + K FK +S + Sbjct: 960 IKAYEEEKERLSKEHHDKLLMIDREEMLKIISLLSKEPLEKDAKIKDKEFKAGEKISKEE 1019 Query: 1013 ISEYPRSQWWQFAVQD-EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 +S+ R +VQ+ ++K ++ K L + + K+ ++ D +P GV+ Sbjct: 1020 LSQINRFALNALVKSYAPEVQKKYNAIKTHFQNEKRKLTEEHEEKLAILEKEDILPSGVV 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKVF+A KR ++ GDKMAGRHGNKGIVS I+P DMP+ KDG VDIVLNPLGVPSRM Sbjct: 1080 KLVKVFIATKRKLKVGDKMAGRHGNKGIVSVIVPEIDMPYTKDGRIVDIVLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E HLG LG++I+ + + K + LR + ++ + E I Sbjct: 1140 NIGQILEVHLGLIGKKLGEQIQEI-FEAKRADFVKELRQKMIEIADVAKLMNAKETIEKM 1198 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ ++ A W GV +TPVF+G E + +A +D G++ LYDG TGE F Sbjct: 1199 SDEELIEYARDWSKGVKFATPVFEGVTAEEFEKLYELAKMDLDGKTELYDGRTGEKFKER 1258 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 VTVGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++A+GAA Sbjct: 1259 VTVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAHGAA 1318 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y++I G + G PE+ VL KE+Q+LG+ +++ + Sbjct: 1319 HTLKEMLTIKSDDVEGRVAAYKAITKGEPIPQPGIPETLFVLTKELQSLGIDVEILDEVK 1378 Query: 1369 KNSA 1372 + Sbjct: 1379 DDEE 1382 >gi|21666269|gb|AAM73635.1|AF389473_1 RNA polymerase beta subunit [Ehrlichia chaffeensis] Length = 1378 Score = 1392 bits (3604), Expect = 0.0, Method: Composition-based stats. Identities = 681/1380 (49%), Positives = 945/1380 (68%), Gaps = 38/1380 (2%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + K+ +I D + DLI++Q+ SY+ F+ ++ + G++ F+S+FPI G A Sbjct: 20 RISYAKSIDIKDSLTDLIKIQRDSYNAFIGID----QNTESGIKNIFQSMFPIQDLLGRA 75 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +LEFVSY P++D +C+ R +T++VP++I LR IV+ V DE T K Sbjct: 76 VLEFVSYSIGEPQYDEYECIKRGITFSVPIRIVLRFIVWKVQEVSFKEVKYVVDEETSEK 135 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIK IKEQ + +GDLP MT GTF+I GI+R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 136 SIKYIKEQEVSIGDLPTMTSHGTFIINGIERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 195 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KDI++ RIDR+RK+PV+ L ALG+ + +IL TFY KI Y + Sbjct: 196 SARIIPYRGSWLDFEFDIKDILYFRIDRKRKLPVSLLLRALGLSNNDILDTFYDKIRYVK 255 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W P A D G ++S L+D D G ++++ ++T + + L G+ + Sbjct: 256 SEKGWVVPFVA-DRFRGVRLSHDLMDSD-GNVLVKANTRITLRMARKLANDGLTKYLVPF 313 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + + GL VA D + + I AG+ I + + ++ I ++ + YI N Sbjct: 314 NEIQGL-VANDFPDSTGNALIISAGENITSEHINKLELFNIGNLWFKDGPGI-VGPYILN 371 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN +DAL +IY+V+R G+ + +S+F+ F+ KYDLSTVGR+K+N L Sbjct: 372 TLFLDKNVSYEDALFEIYKVLRSGESPSL-TYKSLFDGFIFEKGKYDLSTVGRIKLNDHL 430 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 L+ +D+ + K+DII +IK LV LR+G+G++DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 431 GLNVSEDITVLTKDDIIHVIKKLVLLRDGEGSVDDIDHLGNRRVRSVGEFIENQFRIGIL 490 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ MP D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 491 RLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 550 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSAL GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +AR+N +GFIE+ Sbjct: 551 LSALSPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYARINKHGFIES 610 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV G VT+ V YL AM+E N YIA A+++LDE+ F +++++CR G ++V RE+ Sbjct: 611 PYRKVDKGVVTDKVEYLLAMQESNYYIADASATLDENNQFVDDMLYCRHDGNFVMVKREE 670 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D+ID SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLKA+AP +GTGMES+VA Sbjct: 671 VDYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKADAPLIGTGMESIVA 730 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG ++AKR GIV +VD + IVIR+ + + + GVDIY L KFQRSN NTC+NQRP Sbjct: 731 AGSGTVVLAKRGGIVHRVDGLYIVIRAFDQEKNEY-LGVDIYNLRKFQRSNHNTCINQRP 789 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVK GD V+ ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V +DVFT Sbjct: 790 LVKPGDYVKANDVIADGSAIDQGELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKDVFT 849 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFE + RDT LGPE+I R +P+++E+ L ++D+ GI+ VGAEV+ GDILVGK+TP Sbjct: 850 SIHIEEFECVVRDTTLGPEKIMRSVPDINEDSLSHLDDVGIVNVGAEVSAGDILVGKVTP 909 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 + + PE KLL IFGEK D D+SL +P V GTVVDV +F R G+++N+RS+ ++ Sbjct: 910 RPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPLDVEGTVVDVHVFVRRGVEENDRSLLIK 969 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +++D E ++ Y L +L G + +T D ++ P+ + Sbjct: 970 QMN-HGFIKERDYEIDVVSEYFYDELKRVLVSS-------GVQYNTQNIDDYLASIPKKE 1021 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW + DE + V+ LK ++++ +F KI+K+ +G D+P GVL +VKVFVA+ Sbjct: 1022 WWDINLSDEAMLLQVKDLKEKFDSMIQNAHSKFDQKIDKLNYGYDLPQGVLCIVKVFVAV 1081 Query: 1081 KRPIQ---SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV-PSRMNVGQI 1136 K +Q K GRH +G++SRI+P EDMP+L+DGTP DI+LN GV RMNVGQI Sbjct: 1082 KHNLQAQEI--KWLGRHVIQGVISRIVPVEDMPYLEDGTPCDIILNSFGVYLLRMNVGQI 1139 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 ETHLGWA V LGKKI ++ D +S LR+FL +V + I D+ +L Sbjct: 1140 LETHLGWASVNLGKKIGHIL-DNLDELTVSHLRNFLYQVYDGQDLKDNIQSMSDEDLLVF 1198 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 AE+ + GVP++ PVF+G + I+++LR+ADLD SGQ LYDG GE FDR VTVGYIYM Sbjct: 1199 AERLRDGVPMAAPVFEGPKDSQISNLLRLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYM 1258 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL+H+V DK++ARS G Y LVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT Sbjct: 1259 LKLHHLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLT 1318 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEE 1376 +KSDD+VGR ++YESI+ G+ FE G PESFNV+VKE+++L L + L+ + S ++++ Sbjct: 1319 VKSDDIVGRVKIYESIIKGDSNFECGIPESFNVMVKELRSLCLDVALKQDKDFLSNEVKD 1378 >gi|283362148|dbj|BAI65934.1| partial DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus] gi|283362158|dbj|BAI65943.1| partial DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus] gi|283362168|dbj|BAI65952.1| partial DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus] Length = 1243 Score = 1392 bits (3604), Expect = 0.0, Method: Composition-based stats. Identities = 1241/1243 (99%), Positives = 1241/1243 (99%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK Sbjct: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK Sbjct: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQSIYMGDLPLMTKDGTFVIKG QRIVVSQLHRSPGIHFDHDKGRASLSGKLLY Sbjct: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGTQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ Sbjct: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS Sbjct: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN Sbjct: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL Sbjct: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL Sbjct: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMERSIKERISSVDIDSVMPQDLINAKPVVSAV EFFCSSQLSQLEEHVNSLSRITHTRR Sbjct: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVYEFFCSSQLSQLEEHVNSLSRITHTRR 540 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET Sbjct: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK Sbjct: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA Sbjct: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT Sbjct: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP Sbjct: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE Sbjct: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ Sbjct: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM Sbjct: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH Sbjct: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW Sbjct: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE Sbjct: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243 >gi|283362178|dbj|BAI65961.1| partial DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus] Length = 1243 Score = 1392 bits (3603), Expect = 0.0, Method: Composition-based stats. Identities = 1240/1243 (99%), Positives = 1240/1243 (99%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK Sbjct: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK Sbjct: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQSIYMGDLPLMTKDGTFVIKG QRIVVSQLHRSPGIHFDHDKGRASLSGKLLY Sbjct: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGTQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ Sbjct: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS Sbjct: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN Sbjct: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL Sbjct: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL Sbjct: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMERSIKERISSVDIDSVMPQDLINAKPVVSAV EFFCSSQLSQLEEHVNSLSRITHTRR Sbjct: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVYEFFCSSQLSQLEEHVNSLSRITHTRR 540 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET Sbjct: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANS LDEDGSFTEELVFCRCAGEEILVPREK Sbjct: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSFLDEDGSFTEELVFCRCAGEEILVPREK 660 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA Sbjct: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT Sbjct: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP Sbjct: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE Sbjct: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ Sbjct: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM Sbjct: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH Sbjct: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW Sbjct: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE Sbjct: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243 >gi|320105627|ref|YP_004181217.1| DNA-directed RNA polymerase subunit beta [Terriglobus saanensis SP1PR4] gi|319924148|gb|ADV81223.1| DNA-directed RNA polymerase, beta subunit [Terriglobus saanensis SP1PR4] Length = 1490 Score = 1392 bits (3602), Expect = 0.0, Method: Composition-based stats. Identities = 662/1342 (49%), Positives = 886/1342 (66%), Gaps = 72/1342 (5%) Query: 85 KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTF 144 K+D +C R +TY+ PLK+T+RL ++D D TG K+++D+KEQ ++ GD+PLM+++GTF Sbjct: 143 KYDQGECEERGMTYSAPLKVTIRLKIYDKDPETGVKTLRDMKEQEVFFGDIPLMSQNGTF 202 Query: 145 VIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHV 204 ++ G +R++VSQLHRSPG+ F+ R+ GK IIP +G W++ E+D K+ ++V Sbjct: 203 IVNGTERVIVSQLHRSPGVFFETANNRSYFLGK------IIPYRGSWVEFEYDQKNTLYV 256 Query: 205 RIDRRRKVPVTSFLMALGM-DSEEILSTFY--PKIVYSQRGDFWCFPLSAADLMVGAKVS 261 RIDR+RK T FL ALG+ EEIL TFY I + FW A ++G K Sbjct: 257 RIDRKRKFLGTIFLRALGLRTDEEILKTFYTVDNINVRDQKLFWSVKPEGATNLLGVKPG 316 Query: 262 SSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIY 321 S+ G++V + +K+++ L L+ V + + + G A D+V+ TGE+ Sbjct: 317 ESV--SVNGDEVAPTARKISASTLHKLRGGSVNEVSVENTEFDGAIFAADVVDLTTGELL 374 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 EA L +I S + I + D + I NTL D + ++AL++IYR + Sbjct: 375 YEANQEATTDKLHKITQSGCTNFEIFFPDRDDVGNIITNTLKRDSVRKPEEALIEIYRKL 434 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP---DDVRHIRKEDIIA 438 RPGD T A ++F +FFD KYD S VGR+K N++L D R + ED Sbjct: 435 RPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLYESQDATNLDKRTLTPEDFYG 494 Query: 439 IIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSV-DIDS 497 I+ L+ LR G +DDID+LGNRRVR+VGE+++NQ+R+GL+RMER+IKE++S ++ + Sbjct: 495 TIRYLLKLRKNIGLVDDIDHLGNRRVRAVGELMENQFRIGLVRMERAIKEKMSVYQEMST 554 Query: 498 VMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVE 557 MP DLINAKPV++A+ EFF SSQLSQ + N LS ITH RRLSALG GG++R RAG E Sbjct: 555 AMPHDLINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRERAGFE 614 Query: 558 MRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVV-- 615 +RDVHPTHYGRICP ET EG NIGL+SSL+ FAR+N YGFIE+PYR+V +V + V Sbjct: 615 VRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRRVKGSQVIDYVAVT 674 Query: 616 ----------------------------------------YLSAMEEENRYIAQANSSLD 635 YLSA EE+ IAQAN LD Sbjct: 675 NAGESGLRQGDPLEVAEAIKLKKQLKKDGKRVLETEPFSFYLSAWEEDRHTIAQANVELD 734 Query: 636 EDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCN 695 + + ++LV R G ILVP+ ++D++D SPKQ+VS+AASL+PFLE+DD+NR LMG N Sbjct: 735 AEANIKDDLVIARRQGNFILVPKGEVDYVDVSPKQLVSVAASLVPFLEHDDANRALMGAN 794 Query: 696 MQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD-- 753 MQRQ+VPLL AEAPFVGTGME V A+ SGA I+A+R GIV+ VD+ RI++R Sbjct: 795 MQRQSVPLLVAEAPFVGTGMEGVTARDSGAVILARRNGIVDSVDSERIIVRVEGEHHPTQ 854 Query: 754 -PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 G DIY+L KF+RSNQNTC+NQ+P+V+ GD V + ++IADGP T+ G+L LGRN+L Sbjct: 855 LSREVGSDIYQLTKFKRSNQNTCINQKPIVRKGDRVLKGEVIADGPCTEQGELGLGRNVL 914 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW GYNFED++LISE++V ED +TSIHIEEFE+ ARDTKLGPEEITRDIPNVSE Sbjct: 915 VAFMPWRGYNFEDAILISEKLVREDYYTSIHIEEFEIEARDTKLGPEEITRDIPNVSEHA 974 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L+++DE GII +GA+++ DILVGK+TPKGE+ +TPEEKLLRAIFGEKA DVRD SL P Sbjct: 975 LRDLDESGIIRIGAKISHNDILVGKVTPKGETQLTPEEKLLRAIFGEKAGDVRDASLTCP 1034 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 G+ GTVVDVRIF+R G +K+ER+ ++E EQIE L R+ DE IL RL IL Sbjct: 1035 PGIEGTVVDVRIFSRKGQEKDERAKAIETEQIEKLERNLADEIRILTDERLKRLEGILGA 1094 Query: 993 QNAV-------SGPKGFKKSTVLSSDLISEYPRSQWWQFAV--QDEKVQRNVESLKVQYE 1043 + + K K +L D I + +D +V ++ ++ Sbjct: 1095 KEVQADLHDERTNKKLLSKGDLLDRDTIELISTRNLKRIRYADKDPRVNEQIDEIEEMTS 1154 Query: 1044 TSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRI 1103 +L +KI K+Q GD++ PGV+++VKV++AMKR + GDKMAGRHGNKG+++RI Sbjct: 1155 RQIDVLRKITNDKIGKLQKGDELSPGVIKMVKVYIAMKRKLSVGDKMAGRHGNKGVIARI 1214 Query: 1104 LPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANG 1163 LP EDMP+L DGTPV+IVLNPLGVPSRMNVGQI ETHLGWA LGKK+ L + Sbjct: 1215 LPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAFELGKKVAELAAQSQKAN 1274 Query: 1164 DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSML 1223 +I R + + ++ + DD +RVA K G+ T VFDGA E I ++L Sbjct: 1275 EI---REIFSEAFKNTAALNQLLELDDTQTIRVAAGMKRGIWFGTAVFDGASEHEIKALL 1331 Query: 1224 RMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPL 1283 A L SG++ L+DG+TG+ F++P TVGYIYMLKL+H+V DK++ARS G YSL+TQQPL Sbjct: 1332 LAAGLPSSGKTELFDGMTGDVFEQPATVGYIYMLKLSHLVDDKIHARSIGPYSLITQQPL 1391 Query: 1284 GGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGT 1343 GGK+ GGQR GEMEVW ++AYGAAY+LQE+LT KSDDV GRT++YE+IV G E G Sbjct: 1392 GGKAQFGGQRFGEMEVWALEAYGAAYILQELLTSKSDDVFGRTKIYEAIVKGEAAIEPGV 1451 Query: 1344 PESFNVLVKEMQALGLSIDLEN 1365 PESFNVL++E+Q+L L ++L Sbjct: 1452 PESFNVLIRELQSLCLDVELVK 1473 Score = 112 bits (281), Expect = 3e-22, Method: Composition-based stats. Identities = 39/89 (43%), Positives = 48/89 (53%), Gaps = 8/89 (8%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R R F K P I IP+LIEVQ+ SY+ FL M+ P ER + GLQ+ F SVFPIT F Sbjct: 9 RSRLDFSKIPTAIQIPNLIEVQRRSYERFLQMDKLPQEREDNGLQSVFTSVFPITDFRNV 68 Query: 72 AMLEFVSYEFDPPKFDVDDCL---WRDLT 97 + LEFV Y +C + L Sbjct: 69 SELEFVDYSIGN-----WECKCGYLKGLN 92 >gi|283362218|dbj|BAI65997.1| partial DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus] gi|283362238|dbj|BAI66015.1| partial DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus] Length = 1243 Score = 1392 bits (3602), Expect = 0.0, Method: Composition-based stats. Identities = 1243/1243 (100%), Positives = 1243/1243 (100%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK Sbjct: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK Sbjct: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY Sbjct: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ Sbjct: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS Sbjct: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN Sbjct: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL Sbjct: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL Sbjct: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR Sbjct: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET Sbjct: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK Sbjct: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA Sbjct: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT Sbjct: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP Sbjct: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE Sbjct: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ Sbjct: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM Sbjct: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH Sbjct: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW Sbjct: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE Sbjct: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243 >gi|313683392|ref|YP_004061130.1| DNA-directed RNA polymerase subunit beta [Sulfuricurvum kujiense DSM 16994] gi|313156252|gb|ADR34930.1| DNA-directed RNA polymerase subunit beta [Sulfuricurvum kujiense DSM 16994] Length = 1381 Score = 1378 bits (3567), Expect = 0.0, Method: Composition-based stats. Identities = 607/1383 (43%), Positives = 890/1383 (64%), Gaps = 34/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+ I++P+L+++Q++SY+ FLM++ +R G++ F+SVFPI Sbjct: 10 RLRVDFAKTPQQIEVPNLLQLQQSSYESFLMLD--QKDRTKSGIERVFQSVFPIHDSQNR 67 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSI 130 LE++ E PK+ V +C+ R LTY+V L++ RL+++D DE T K+ +KDIKEQ+I Sbjct: 68 LSLEYLGSEVGRPKYTVRECMERGLTYSVSLRMKTRLMIWDRDENTKEKTGVKDIKEQTI 127 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ D+PLMT +FVI G++R+VV+QLHRSPG+ F ++ + S K+++ +IIPD+G Sbjct: 128 FIRDIPLMTDRTSFVINGVERVVVNQLHRSPGVIFKEEESTTAGS-KMIFTGQIIPDRGS 186 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D KDI+++RI++RRKVPVT ALG ++IL FYP + + Sbjct: 187 WLYFEYDPKDILYMRINKRRKVPVTIMFRALGYSKQDILKMFYPLQKIRVEENKYLMDFD 246 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 ++ L+D + G+ ++ +GK+L++ + L +GVK + + L ++AE Sbjct: 247 PEQFA--GRLGYDLIDSE-GKLLVAAGKRLSTKKAEKLISEGVKAIQYPIETLIERHLAE 303 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ ETGE+ + +DE L+++ + +++ I + ++ I N + D + Sbjct: 304 PIIDAETGEVMFDTMTQLDETKLKKMVEAGVKEFVIANDLAEGYDSAIINAFIADADSLK 363 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ T A+ N LFFD ++YDL+ VGR+KMN Sbjct: 364 LLRQTEIIEDENDLAAIRIYKVMRPGEPVTKEAAKVFVNQLFFDPERYDLTRVGRMKMNH 423 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII +K +V ++NG+G IDD D+LGNRR+RS+GE+L N+ G Sbjct: 424 KLGLNIPEYVTVLTNEDIINTVKYVVKVKNGQGHIDDRDHLGNRRIRSIGELLGNELHNG 483 Query: 479 LLRMERSIKERISSVDIDS--VMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++IK+++S++ + +MP DLIN+K + S + EFF QLSQ + N LS +T Sbjct: 484 LVKMQKAIKDKLSTMSGPTTELMPHDLINSKMITSTIMEFFSGGQLSQFMDQTNPLSEVT 543 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L ++++VN +G Sbjct: 544 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLATYSKVNEHG 603 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PY V DG VT++VVYL+A +EE + IA A+S +D+ G+F ++LV R GE LV Sbjct: 604 FIEAPYNVVKDGVVTDEVVYLTATQEEGKVIAAASSRIDDKGNFLDDLVETRQDGEYPLV 663 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + + D +P VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL+ EAP VGTG+E Sbjct: 664 SPKDCELRDLTPHMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPMVGTGVE 723 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 +VA+ S + A+R+GIVE+VD+ I I + D + +D Y L K R+NQNT Sbjct: 724 KLVARDSWECVKAERSGIVEKVDSKHIYIMGEDED----GTFIDYYPLQKNLRTNQNTTF 779 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q+P+VK G V + IIADGP+ D G+LALG N LVAFMPW+GYNFED++++SERM+ E Sbjct: 780 LQKPIVKQGQMVTKGQIIADGPNMDKGELALGINALVAFMPWNGYNFEDAIVMSERMIRE 839 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E AR+ K G EEITRDIPNV ++ L ++D+ GI+ +G V G ILVG Sbjct: 840 DAFTSVHIYEKEAEARELKHGVEEITRDIPNVRDDELAHLDDSGIVKIGTYVKGGMILVG 899 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + G VVDV++F + G DK+ R+ Sbjct: 900 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCTPSMEGVVVDVKVFTKKGYDKDPRT 959 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG----FKKSTVLSSDL 1012 + +E+++ + L R+ D +++D+ R++ +L +S +K + D Sbjct: 960 LELEKQERDELEREHYDRLLMIDKEEMLRIISLLTKHPLLSDVSINGNEYKAGENVKGDD 1019 Query: 1013 ISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + E R + +Q K ++ K D + K+ ++ D +P GV+ Sbjct: 1020 LKEVNRFAMNNVVKAFSDDIQEKYNQTKNHFQKEKKKFRDEHEEKLSILEKDDILPNGVV 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 + VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP++ +G VD+ LNPLGVPSRM Sbjct: 1080 KFVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPQVDMPYMANGRSVDVCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL---EKVIGTGSHTEKISDY 1188 N+GQI E HLG LG +I+ + + K IS LR + V G + + + + Sbjct: 1140 NIGQILEMHLGMVGKELGFQIQDI-FEAKQKEFISELREKMITFADVAGLMNAAKLLGEM 1198 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 DD ++L A+ W GV +TP+F+G E + +A LD G+ LYDG TG+ Sbjct: 1199 DDQTLLGYAQDWSKGVKFATPIFEGVTEAEFAKLFELAKLDTDGKMELYDGKTGDKMKER 1258 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGA+ Sbjct: 1259 VNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAS 1318 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 VL+EMLTIKSDDV GR R Y++I G +G PE+ VL KE+Q+L L I++ + Sbjct: 1319 AVLKEMLTIKSDDVDGRVRAYKAITKGESVPASGIPETLFVLTKELQSLALDIEIFDEVD 1378 Query: 1369 KNS 1371 N Sbjct: 1379 DNE 1381 >gi|222823479|ref|YP_002575053.1| DNA-directed RNA polymerase, beta chain [Campylobacter lari RM2100] gi|254765279|sp|B9KFG7|RPOB_CAMLR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|222538701|gb|ACM63802.1| DNA-directed RNA polymerase, beta chain [Campylobacter lari RM2100] Length = 1377 Score = 1376 bits (3561), Expect = 0.0, Method: Composition-based stats. Identities = 616/1383 (44%), Positives = 886/1383 (64%), Gaps = 37/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F P+ IDIP+L+++QK S+D+FL ++ + G++ FKS+FPI Sbjct: 9 RLRIDFSNVPQQIDIPNLLQLQKKSFDYFLNID---AKNSESGIEKVFKSIFPIHDPQNR 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K IKDIKEQ I Sbjct: 66 LSLEYVSSEVGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKIGIKDIKEQEI 125 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 126 YIREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 184 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVP+T ALG ++I+ FYP + D + + Sbjct: 185 WLYFEYDAKDVLYVRINKRRKVPITILFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 244 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D + +V L D + G + ++GK++T + L + G+K++ + L Y+A Sbjct: 245 PNDFL--DRVEYDLKD-EKGNIIHQAGKRMTKKKAEQLVKDGIKWVEYPVEILTNRYLAN 301 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I+N ETGE+ ++ ++DE L +I + I + +A I N+ + D Sbjct: 302 PIINKETGEVLFDSLTLLDESKLAKIKEQ--KTFDIANDLANGVDAAIINSFIQDNETLK 359 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 360 LLKQTENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 419 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L LDTP+ V + EDI+ K L+ ++NG+G IDD D+LGNRR+RS+GE+L N+ +G Sbjct: 420 KLGLDTPEYVTVLTNEDIVKTAKYLIKVKNGRGHIDDRDHLGNRRIRSIGELLANELHVG 479 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + DID VMP DLIN K + + EFF QLSQ + N LS +T Sbjct: 480 LAKMQKAIRDKFTALNTDIDKVMPYDLINPKTITVTIMEFFTGGQLSQFMDQTNPLSEVT 539 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 540 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNDLG 599 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PY+KV +GKV+N++VYL+A +EE IA A++ +DE GS EE V R GE IL Sbjct: 600 FVEAPYKKVENGKVSNEIVYLTATQEEGLVIAAASTKIDEKGSIVEEFVEARQDGETILA 659 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL A+AP VGTGME Sbjct: 660 RREEVHLIDLCSGMIVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTAQAPIVGTGME 719 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + AI AKRAGIVE+VD I I + + +D Y++ K R+NQNT Sbjct: 720 KIIARDAWEAIKAKRAGIVEKVDNKNIFILGEDE----NGPFIDHYKMEKNLRTNQNTTF 775 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK G+ V+ IIADGPS D G+LA+G+N L+AFMPWHGYN+ED+++ISE+++ E Sbjct: 776 TQHPIVKKGEFVQVGQIIADGPSMDQGELAIGKNALIAFMPWHGYNYEDAIVISEKILRE 835 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E EV AR+ K G EEIT+DIPNV E+ L ++DE GI +G + PG ILVG Sbjct: 836 DTFTSVHIYEKEVEARELKDGVEEITKDIPNVKEDDLAHLDESGIAKIGTHIKPGMILVG 895 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K+ R+ Sbjct: 896 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASMEGVVVDVKIFTKKGYEKDARA 955 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK----GFKKSTVLSSDL 1012 I E+ L ++ D +++DR R+ +L S + +KK + Sbjct: 956 IKAYDEEKLNLEKEHHDRLLMMDREETLRVCSLLSKSALNSDEEINGQKYKKGAKVDIKE 1015 Query: 1013 ISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R + VQ+ E LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1016 LEKINRFALNSLVKAYSKDVQKEYEDLKNHFQNEKKKLKSEHDEKLEILEKDDILPSGVV 1075 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L DG P+DI LNPLGVPSRM Sbjct: 1076 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYLPDGRPIDIALNPLGVPSRM 1135 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS---HTEKISDY 1188 N+GQI E+HLG + LG +I+ + D K I LR+ + ++ + + Sbjct: 1136 NIGQILESHLGIVGMRLGDQIQEI-FDKKQKDFIKQLRTKILEICSVSRLTLEKKFVESL 1194 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 +D+ ++ A W GV +TPVF+G E + + MA + G+S LYDG TGE Sbjct: 1195 NDEQLISYARDWARGVKFATPVFEGVTVEEFSKLFEMAKIAMDGKSELYDGRTGEKMAER 1254 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1255 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1314 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1315 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1374 Query: 1369 KNS 1371 N Sbjct: 1375 NNE 1377 >gi|86151640|ref|ZP_01069854.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|315124021|ref|YP_004066025.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841269|gb|EAQ58517.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|315017743|gb|ADT65836.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 1375 Score = 1376 bits (3561), Expect = 0.0, Method: Composition-based stats. Identities = 611/1383 (44%), Positives = 883/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 9 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 63 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 64 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 123 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 124 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 182 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 183 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 242 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 243 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 299 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 300 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 357 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 358 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 417 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 418 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 477 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 478 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITATIIEFFTGGQLSQFMDQTNPLSEVT 537 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 538 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 597 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 598 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 657 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 658 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 717 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 718 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 773 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 774 IQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 833 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 834 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 893 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 894 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 953 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 954 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISE 1013 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1014 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1073 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1074 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1133 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D K + LR+ + ++ S E I Sbjct: 1134 NIGQILESHLGLIGLRLGDQIQEI-FDRKQKDFLKELRAKMLEICSIPRLASEKEFIKSL 1192 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV +TPVF+G + E + + MA +D G++ LYDG TGE Sbjct: 1193 SDEELLNYARDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAER 1252 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1253 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1312 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1313 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1372 Query: 1369 KNS 1371 N Sbjct: 1373 DNE 1375 >gi|224372232|ref|YP_002606604.1| DNA-directed RNA polymerase subunit beta [Nautilia profundicola AmH] gi|223589582|gb|ACM93318.1| DNA-directed RNA polymerase, beta subunit [Nautilia profundicola AmH] Length = 1379 Score = 1376 bits (3561), Expect = 0.0, Method: Composition-based stats. Identities = 595/1385 (42%), Positives = 895/1385 (64%), Gaps = 38/1385 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+I+DIP+L+ +Q+ S+ F+ + G+ FKS+FPIT Sbjct: 10 RLRLDFSKIPQILDIPNLLHLQQNSFQDFINLKEP----EKSGIHKVFKSMFPITDAQNR 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSI 130 LE+ EF PK+ V +C+ + LTY++P++I +RLIV + DE TG K IKDIKEQ++ Sbjct: 66 ITLEYAGIEFKKPKYTVRECMEKGLTYSIPIRIKIRLIVHERDEKTGEKIGIKDIKEQTL 125 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ D+PLMT+ +F+I G++R++V+QLHRSPG+ F ++ + S KLLY+ +IIPD+G Sbjct: 126 YIRDIPLMTERTSFIINGVERVIVNQLHRSPGVIFKQEEAQN--SNKLLYSAQIIPDRGS 183 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D KD+++VR+++RRKVPVT L A+ E+IL FYP + + + + Sbjct: 184 WVYFEYDVKDVLYVRVNKRRKVPVTILLRAMDYSKEDILRMFYPIVDIKIQDNKFLMSTK 243 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 A + K+ L D D G ++ +GK+L+ LK ++E+ ++++ + L ++AE Sbjct: 244 A---LQSGKLDYDLKDPD-GNIILAAGKRLSDRKLKKIQEE-LEYVEYPIEVLLDRHLAE 298 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN--- 367 I + TGE+ + V++E L++I S+I D I+ + + I D Sbjct: 299 PIYDPVTGEVLFDTLTVLNEVKLKKIIESQIEDFKIVNDLAEGVDDSILRAFHQDIETLK 358 Query: 368 ---------KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ +T A+ +F LFFD ++YDL+ VGR+KMN Sbjct: 359 ILRQVEGIENENDLARIRIYKVMRPGEPATPQTAKELFEKLFFDPERYDLTKVGRMKMNH 418 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ PDDV + +DII I+ L+ ++NG G IDD D+LGNRR+RS+GE+L N+ + G Sbjct: 419 KLGLNVPDDVTVLTYQDIIKTIQYLIGVKNGVGQIDDRDHLGNRRIRSIGELLANRLQDG 478 Query: 479 LLRMERSIKERISS-VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 L +M+++I++++++ +++ ++P DL+N K V + + +FF + QLSQ + N LS + H Sbjct: 479 LAKMQKTIRDKMTTVTNVNDLLPMDLVNTKLVTTTILDFFATGQLSQFMDQTNPLSEVAH 538 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG+GGV R RAG E+RDVHP+HYGRICP ET EG NIGLV++L+++A+VN +GF Sbjct: 539 KRRLSALGEGGVTRERAGFEIRDVHPSHYGRICPIETPEGQNIGLVNTLSTYAKVNEFGF 598 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDED-GSFTEELVFCRCAGEEILV 656 IE PYR V DG+VT++VVYL+A +EE + IA A+ +DE+ G ++L+ R GE ILV Sbjct: 599 IEAPYRVVKDGRVTDEVVYLTATQEEEKTIAPASVKIDEETGEILDDLIEARKDGEIILV 658 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 ++++D D +PK +V + ASLIPFLE+DD+NR LMG NMQRQ VPLL++EAP VGTGME Sbjct: 659 DKKEVDLYDLNPKMIVGVGASLIPFLEHDDANRALMGSNMQRQGVPLLRSEAPMVGTGME 718 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 VA+ + + AKR G V +VDA I I + + + +D Y L K+ R+NQNTC Sbjct: 719 KYVARDAWQIVKAKRGGKVIKVDAKNIYILGEDE----NGAYIDHYGLEKYLRTNQNTCF 774 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 +QRP+VK GD V+ D+IADGP+ D G+L +G+N++VAFMPW+GYNFED++++SER++ + Sbjct: 775 DQRPIVKEGDVVKAGDVIADGPNMDNGELGVGKNVMVAFMPWNGYNFEDAIVLSERIIKD 834 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DV+TS+HI E R+ K G EEIT DIP V E L ++DE GII +G V PG ILVG Sbjct: 835 DVYTSVHIYEEVCEVRELKHGLEEITADIPGVKPEYLTHLDESGIIKIGTYVKPGMILVG 894 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 KI+PKG+ TPEE+LL++IFG+K+ V ++SL P+ + G V+DV+++ + G + +ER+ Sbjct: 895 KISPKGDVKPTPEERLLKSIFGDKSGHVVNSSLYAPASMEGVVIDVKVYTKKGYELDERA 954 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGP----KGFKKSTVLSSDL 1012 + E+ + ++ I+D+ L +L + + K +K L + Sbjct: 955 KAAYDEEKAKIEEIYKNQLSIIDKEEVLALANLLSSKPLIKDVELNGKTYKAGEKLPKEE 1014 Query: 1013 ISEYPRSQWWQF-AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + D+ + E++K +Y K + + K+E ++ D +P GV Sbjct: 1015 LVNINKFLLLSLVEYFDDATVQEFENIKAKYLNEKDNIRKEYDEKLEVLERDDILPNGVA 1074 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR I+ GDKMAGRHGNKGIVS I+P EDMP+++DG VD+VLNPLGVPSRM Sbjct: 1075 KMVKVYIANKRKIKVGDKMAGRHGNKGIVSIIVPQEDMPYMEDGRTVDVVLNPLGVPSRM 1134 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKAN---GDISPLRSFLEKVIGTGSHTEKISDY 1188 N+GQI E HLG LG++I+ ++ + + + + ++ +E + + + Sbjct: 1135 NIGQILEVHLGLVGKNLGRQIEEILKEKQNDMMDKLRNKMKEIVEVAHFGEHYKDFLDSL 1194 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 ++ +L+ A+ W GV +TPVF+G +EE + +A + E G++ LYDG TGEP Sbjct: 1195 TNEELLKYAQDWAKGVKFATPVFEGVNEEEFKKLFELAGIPEDGKTQLYDGRTGEPIKER 1254 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+YMLKL+H+V DKV+ARS G YSL+TQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1255 VNVGYMYMLKLHHLVDDKVHARSIGPYSLITQQPVGGKALFGGQRFGEMEVWALEAYGAA 1314 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 Y L+EMLT KSDDV GR + Y ++ G + G E+F VL KE++ALGL ++ Sbjct: 1315 YNLKEMLTTKSDDVEGRNKAYRALTRGENVPIEGLSETFFVLSKELRALGLDLEFYKKEE 1374 Query: 1369 KNSAK 1373 N Sbjct: 1375 DNEEI 1379 >gi|121613040|ref|YP_001000185.1| DNA-directed RNA polymerase subunit beta [Campylobacter jejuni subsp. jejuni 81-176] gi|158513882|sp|A1VYJ4|RPOB_CAMJJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|121504217|gb|EAQ73187.2| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 1378 Score = 1375 bits (3559), Expect = 0.0, Method: Composition-based stats. Identities = 610/1383 (44%), Positives = 883/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 12 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 66 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 67 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 126 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 127 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 185 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 186 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 245 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 246 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 302 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 303 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 360 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 361 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 420 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 421 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 480 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 481 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT 540 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 541 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 600 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 601 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 660 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 661 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 720 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 721 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 776 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 777 IQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 836 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 837 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 896 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 897 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 956 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 957 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISE 1016 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1017 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1076 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1077 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1136 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D + + LR+ + ++ S E I Sbjct: 1137 NIGQILESHLGLIGLRLGDQIQEI-FDRRQKDFLKELRAKMLEICSIPRLASEKEFIKSL 1195 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV +TPVF+G + E + + MA +D G++ LYDG TGE Sbjct: 1196 SDEELLNYARDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAER 1255 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1256 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1315 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1316 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1375 Query: 1369 KNS 1371 N Sbjct: 1376 DNE 1378 >gi|167005143|ref|ZP_02270901.1| DNA-directed RNA polymerase subunit beta [Campylobacter jejuni subsp. jejuni 81-176] Length = 1375 Score = 1375 bits (3558), Expect = 0.0, Method: Composition-based stats. Identities = 610/1383 (44%), Positives = 883/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 9 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 63 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 64 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 123 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 124 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 182 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 183 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 242 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 243 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 299 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 300 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 357 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 358 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 417 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 418 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 477 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 478 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT 537 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 538 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 597 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 598 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 657 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 658 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 717 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 718 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 773 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 774 IQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 833 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 834 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 893 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 894 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 953 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 954 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISE 1013 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1014 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1073 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1074 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1133 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D + + LR+ + ++ S E I Sbjct: 1134 NIGQILESHLGLIGLRLGDQIQEI-FDRRQKDFLKELRAKMLEICSIPRLASEKEFIKSL 1192 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV +TPVF+G + E + + MA +D G++ LYDG TGE Sbjct: 1193 SDEELLNYARDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAER 1252 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1253 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1312 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1313 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1372 Query: 1369 KNS 1371 N Sbjct: 1373 DNE 1375 >gi|157414771|ref|YP_001482027.1| DNA-directed RNA polymerase subunit beta [Campylobacter jejuni subsp. jejuni 81116] gi|182676555|sp|A8FKR3|RPOB_CAMJ8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157385735|gb|ABV52050.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni 81116] gi|307747410|gb|ADN90680.1| DNA-directed RNA polymerase subunit beta [Campylobacter jejuni subsp. jejuni M1] gi|315931081|gb|EFV10055.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni 327] Length = 1375 Score = 1375 bits (3558), Expect = 0.0, Method: Composition-based stats. Identities = 611/1383 (44%), Positives = 883/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 9 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 63 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 64 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 123 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 124 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 182 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 183 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 242 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 243 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 299 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 300 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 357 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 358 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 417 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 418 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 477 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 478 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT 537 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 538 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 597 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 598 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 657 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 658 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 717 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 718 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 773 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 774 IQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 833 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 834 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 893 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 894 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 953 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 954 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISE 1013 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1014 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1073 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1074 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1133 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D K + LR+ + ++ S E I Sbjct: 1134 NIGQILESHLGLIGLRLGDQIQEI-FDRKQKDFLKELRAKMLEICSIPRLASEKEFIKSL 1192 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV +TPVF+G + E + + MA +D G++ LYDG TGE Sbjct: 1193 SDEELLNYARDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAER 1252 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1253 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1312 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1313 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1372 Query: 1369 KNS 1371 N Sbjct: 1373 DNE 1375 >gi|205355351|ref|ZP_03222122.1| DNA-directed RNA polymerase beta chain [Campylobacter jejuni subsp. jejuni CG8421] gi|205346585|gb|EDZ33217.1| DNA-directed RNA polymerase beta chain [Campylobacter jejuni subsp. jejuni CG8421] Length = 1378 Score = 1374 bits (3557), Expect = 0.0, Method: Composition-based stats. Identities = 611/1383 (44%), Positives = 884/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 12 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 66 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 67 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 126 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 127 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 185 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 186 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 245 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 246 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 302 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 303 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 360 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 361 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 420 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 421 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 480 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 481 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT 540 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 541 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 600 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 601 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 660 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 661 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 720 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 721 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 776 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 777 IQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 836 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 837 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 896 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 897 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 956 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 957 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISE 1016 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1017 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1076 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1077 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1136 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D K + LR+ + ++ + E I Sbjct: 1137 NIGQILESHLGLVGLRLGDQIQEI-FDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSL 1195 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV STPVF+G + E + + +MA +D G++ LYDG TGE Sbjct: 1196 SDEELLNYARDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAER 1255 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1256 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1315 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1316 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1375 Query: 1369 KNS 1371 N Sbjct: 1376 DNE 1378 >gi|57237532|ref|YP_178546.1| DNA-directed RNA polymerase subunit beta [Campylobacter jejuni RM1221] gi|148925857|ref|ZP_01809544.1| DNA-directed RNA polymerase beta chain [Campylobacter jejuni subsp. jejuni CG8486] gi|81353964|sp|Q5HVY9|RPOB_CAMJR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|57166336|gb|AAW35115.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni RM1221] gi|145844843|gb|EDK21947.1| DNA-directed RNA polymerase beta chain [Campylobacter jejuni subsp. jejuni CG8486] Length = 1378 Score = 1374 bits (3557), Expect = 0.0, Method: Composition-based stats. Identities = 611/1383 (44%), Positives = 884/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 12 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 66 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 67 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 126 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 127 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 185 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 186 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 245 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 246 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 302 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 303 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 360 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 361 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 420 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 421 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 480 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 481 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT 540 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 541 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 600 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 601 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 660 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 661 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 720 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 721 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 776 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 777 IQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 836 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 837 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 896 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 897 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 956 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 957 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISE 1016 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1017 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1076 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1077 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1136 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D K + LR+ + ++ + E I Sbjct: 1137 NIGQILESHLGLVGLRLGDQIQEI-FDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSL 1195 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV STPVF+G + E + + +MA +D G++ LYDG TGE Sbjct: 1196 SDEELLNYARDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAER 1255 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1256 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1315 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1316 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1375 Query: 1369 KNS 1371 N Sbjct: 1376 DNE 1378 >gi|218562133|ref|YP_002343912.1| DNA-directed RNA polymerase subunit beta [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|9297126|sp|Q46124|RPOB_CAMJE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|112359839|emb|CAL34626.1| DNA-directed RNA polymerase beta chain [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 1378 Score = 1374 bits (3557), Expect = 0.0, Method: Composition-based stats. Identities = 611/1383 (44%), Positives = 884/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 12 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 66 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 67 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 126 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 127 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 185 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 186 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 245 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 246 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 302 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 303 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 360 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 361 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 420 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 421 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 480 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 481 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT 540 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 541 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 600 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 601 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 660 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 661 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 720 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 721 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 776 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 777 IQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 836 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 837 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 896 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 897 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 956 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 957 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISE 1016 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1017 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1076 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1077 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1136 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D K + LR+ + ++ + E I Sbjct: 1137 NIGQILESHLGLVGLRLGDQIQEI-FDRKQKDFLKELRAKILEICSIPRLANEKEFIKSL 1195 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV STPVF+G + E + + +MA +D G++ LYDG TGE Sbjct: 1196 SDEELLNYARDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAER 1255 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1256 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1315 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1316 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1375 Query: 1369 KNS 1371 N Sbjct: 1376 DNE 1378 >gi|315057898|gb|ADT72227.1| DNA-directed RNA polymerase beta subunit [Campylobacter jejuni subsp. jejuni S3] Length = 1375 Score = 1374 bits (3556), Expect = 0.0, Method: Composition-based stats. Identities = 611/1383 (44%), Positives = 884/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 9 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 63 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 64 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 123 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 124 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 182 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 183 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 242 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 243 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 299 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 300 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 357 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 358 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 417 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 418 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 477 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 478 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT 537 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 538 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 597 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 598 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 657 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 658 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 717 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 718 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 773 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 774 IQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 833 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 834 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 893 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 894 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 953 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 954 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISE 1013 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1014 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1073 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1074 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1133 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D K + LR+ + ++ + E I Sbjct: 1134 NIGQILESHLGLVGLRLGDQIQEI-FDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSL 1192 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV STPVF+G + E + + +MA +D G++ LYDG TGE Sbjct: 1193 SDEELLNYARDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAER 1252 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1253 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1312 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1313 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1372 Query: 1369 KNS 1371 N Sbjct: 1373 DNE 1375 >gi|86149044|ref|ZP_01067276.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840402|gb|EAQ57659.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|315928193|gb|EFV07510.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 1375 Score = 1374 bits (3556), Expect = 0.0, Method: Composition-based stats. Identities = 611/1383 (44%), Positives = 884/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 9 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 63 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 64 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 123 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 124 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 182 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 183 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 242 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 243 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 299 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 300 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 357 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 358 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 417 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 418 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 477 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 478 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT 537 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 538 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 597 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 598 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 657 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 658 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 717 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 718 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 773 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 774 IQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 833 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 834 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 893 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 894 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 953 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 954 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISE 1013 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1014 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1073 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1074 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1133 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D K + LR+ + ++ + E I Sbjct: 1134 NIGQILESHLGLVGLRLGDQIQEI-FDRKQKDFLKELRAKILEICSIPRLANEKEFIKSL 1192 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV STPVF+G + E + + +MA +D G++ LYDG TGE Sbjct: 1193 SDEELLNYARDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAER 1252 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1253 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1312 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1313 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1372 Query: 1369 KNS 1371 N Sbjct: 1373 DNE 1375 >gi|284925745|gb|ADC28097.1| DNA-directed RNA polymerase subunit beta [Campylobacter jejuni subsp. jejuni IA3902] Length = 1378 Score = 1374 bits (3556), Expect = 0.0, Method: Composition-based stats. Identities = 610/1383 (44%), Positives = 883/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 12 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 66 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 67 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 126 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 127 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 185 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 186 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 245 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 246 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 302 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 303 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 360 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 361 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 420 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 421 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 480 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 481 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT 540 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 541 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 600 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 601 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 660 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 661 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 720 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 721 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 776 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 777 IQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 836 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 837 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 896 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 897 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 956 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 957 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISE 1016 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1017 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1076 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1077 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1136 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D K + LR+ + ++ + E I Sbjct: 1137 NIGQILESHLGLVGLRLGDQIQEI-FDRKQKDFLKELRAKILEICSIPRLANEKEFIKSL 1195 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV STPVF+G + E + + +MA +D G++ LYDG TGE Sbjct: 1196 SDEELLNYARDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAER 1255 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1256 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1315 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + G PE+F VL E+++L L +++ + Sbjct: 1316 HTLREMLTIKSDDVEGRFSAYKALTKGENVPAIGIPETFFVLTNELKSLALDVEIFDKDE 1375 Query: 1369 KNS 1371 N Sbjct: 1376 DNE 1378 >gi|283955900|ref|ZP_06373390.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792560|gb|EFC31339.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 1375 Score = 1374 bits (3556), Expect = 0.0, Method: Composition-based stats. Identities = 611/1383 (44%), Positives = 883/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 9 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 63 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 64 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 123 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 124 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 182 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 183 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 242 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 243 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 299 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 300 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 357 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 358 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 417 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 418 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 477 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 478 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT 537 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 538 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 597 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 598 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 657 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 658 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 717 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 718 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 773 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 774 IQHPIVKKGDIVKTGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 833 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 834 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 893 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 894 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 953 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 954 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISE 1013 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1014 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1073 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1074 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1133 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D K + LR+ + ++ S E I Sbjct: 1134 NIGQILESHLGLIGLRLGDQIQEI-FDRKQKDFLKELRAKMLEICSIPRLASEKEFIKSL 1192 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV +TPVF+G + E + + MA +D G++ LYDG TGE Sbjct: 1193 SDEELLNYARDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAER 1252 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1253 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1312 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1313 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1372 Query: 1369 KNS 1371 N Sbjct: 1373 DNE 1375 >gi|86153591|ref|ZP_01071794.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842552|gb|EAQ59764.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] Length = 1375 Score = 1374 bits (3556), Expect = 0.0, Method: Composition-based stats. Identities = 610/1383 (44%), Positives = 882/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 9 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 63 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 64 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 123 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 124 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 182 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 183 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 242 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 243 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 299 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 300 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 357 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 358 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 417 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 418 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 477 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 478 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT 537 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 538 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 597 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 598 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 657 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 658 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 717 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 718 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 773 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 774 IQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 833 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 834 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 893 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 894 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 953 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ L + G K +KK Sbjct: 954 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCAFLSKAPLNSDQKIGDKNYKKGQTADISE 1013 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1014 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1073 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1074 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1133 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D + + LR+ + ++ S E I Sbjct: 1134 NIGQILESHLGLIGLRLGDQIQEI-FDRRQKDFLKELRAKMLEICSIPRLASEKEFIKSL 1192 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV +TPVF+G + E + + MA +D G++ LYDG TGE Sbjct: 1193 SDEELLNYARDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAER 1252 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1253 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1312 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1313 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1372 Query: 1369 KNS 1371 N Sbjct: 1373 DNE 1375 >gi|57242438|ref|ZP_00370376.1| DNA-directed RNA polymerase, beta subunit [Campylobacter upsaliensis RM3195] gi|57016723|gb|EAL53506.1| DNA-directed RNA polymerase, beta subunit [Campylobacter upsaliensis RM3195] Length = 1377 Score = 1374 bits (3556), Expect = 0.0, Method: Composition-based stats. Identities = 609/1383 (44%), Positives = 886/1383 (64%), Gaps = 37/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R R F + I+IP+L+++QKAS+D+FL + D + G++ FKS+FPI Sbjct: 9 RFRVDFSNISKQIEIPNLLQLQKASFDYFLNL---SDTKSESGIEKVFKSIFPIHDPQNR 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K IKDIKEQ I Sbjct: 66 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGIKDIKEQEI 125 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 126 FIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 184 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVP+T ALG ++I+ FYP + D + + Sbjct: 185 WLYFEYDAKDVLYVRINKRRKVPITMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 244 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D + +V + D + G+ V +GK+LT ++ L + G+K++ + L Y+A Sbjct: 245 PNDFV--DRVEYDIKD-EKGKIVHPAGKRLTKKKIEQLIKDGLKWVEYPLEVLINRYLAS 301 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 IV+ ++GE+ ++ +IDE L +I + I + +A I N+ + D Sbjct: 302 PIVDKQSGEVLFDSLTLIDEGKLAKIKEQ--KSFNIANDLANGVDAAIINSFIQDNETLK 359 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 360 LLKQSENLEDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 419 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L LD P+ + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 420 KLALDVPEYTTVLTNEDIIKTAKYLIKVKNGKGYIDDRDHLGNRRIRSIGELLANELHLG 479 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ S + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 480 LTKMQKAIRDKFSSLNADLDKVMPYDLINPKMITTTILEFFTGGQLSQFMDQTNPLSEVT 539 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 540 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 599 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKV++++VYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 600 FVEAPYRKVENGKVSDEIVYLTATQEEGLFIAPASTKIDAKGNIIEEFVEARQDGETILA 659 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL + AP VGTGME Sbjct: 660 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTSSAPIVGTGME 719 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + AI A+R G++E+VD I I + +D Y L K R+NQNT Sbjct: 720 RIIARDAWEAIKARRGGMIEKVDNKSIFILGEDEK----GPFIDHYSLEKNLRTNQNTNY 775 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 776 VQHPIVKKGDVVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 835 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV E+ + ++DE GI +G + PG ILVG Sbjct: 836 DTFTSVHIYEKEIEARELKDGVEEITKDIPNVKEDDVAHLDESGIAKIGTHIKPGMILVG 895 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 896 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRT 955 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEIL----CGQNAVSGPKGFKKSTVLSSDL 1012 + ++ +L ++ D +++DR R+ +L G K +KK +S + Sbjct: 956 LKSYDKEKIVLEKEYHDRLLMMDREEMLRVYALLAKAPLNSEQKVGSKTYKKGQKVSKED 1015 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R ++VQ+ E LK ++ K + K+E ++ D +P GV+ Sbjct: 1016 LEKVNRFILTSLIKAYSKEVQKQYEDLKNHFQNEKKKFKAEHDEKLEILEKDDILPSGVV 1075 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1076 KLVKIYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1135 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG++I+ L D K I LR + ++ + + Sbjct: 1136 NIGQILESHLGLVGLKLGEQIQEL-FDKKQKDFIKSLRKKMLEICSIPRLANEKAFVESL 1194 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV +TPVF+G + E + +MA +D G++ LYDG TGE Sbjct: 1195 SDEELLNYARDWSKGVKFATPVFEGVNIEEFAELFKMAKVDMDGKTELYDGRTGEKIAER 1254 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1255 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1314 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1315 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1374 Query: 1369 KNS 1371 KN Sbjct: 1375 KNE 1377 >gi|315639008|ref|ZP_07894178.1| DNA-directed RNA polymerase subunit beta [Campylobacter upsaliensis JV21] gi|315480920|gb|EFU71554.1| DNA-directed RNA polymerase subunit beta [Campylobacter upsaliensis JV21] Length = 1377 Score = 1374 bits (3555), Expect = 0.0, Method: Composition-based stats. Identities = 608/1383 (43%), Positives = 886/1383 (64%), Gaps = 37/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R R F + I+IP+L+++QKAS+D+FL + D + G++ FKS+FPI Sbjct: 9 RFRVDFSNISKQIEIPNLLQLQKASFDYFLNL---SDTKSESGIEKVFKSIFPIHDPQNR 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K IKDIKEQ I Sbjct: 66 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGIKDIKEQEI 125 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 126 FIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 184 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVP+T ALG ++I+ FYP + D + + Sbjct: 185 WLYFEYDAKDVLYVRINKRRKVPITMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 244 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D + +V + D + G+ V +GK+LT ++ L + G+K++ + L Y+A Sbjct: 245 PNDFV--DRVEYDIKD-EKGKIVHPAGKRLTKKKIEQLIKDGLKWVEYPLEVLINRYLAS 301 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 IV+ ++GE+ ++ +IDE L +I + I + +A I N+ + D Sbjct: 302 PIVDKQSGEVLFDSLTLIDEGKLAKIKEQ--KSFNIANDLANGVDAAIINSFIQDNETLK 359 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 360 LLKQSENLEDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 419 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L LD P+ + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 420 KLALDVPEYTTVLTNEDIIKTAKYLIKVKNGKGYIDDRDHLGNRRIRSIGELLANELHLG 479 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ S + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 480 LTKMQKAIRDKFSSLNADLDKVMPYDLINPKMITTTILEFFTGGQLSQFMDQTNPLSEVT 539 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 540 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 599 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKV+++VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 600 FVEAPYRKVENGKVSDEVVYLTATQEEGLFIAPASTKIDAKGNIIEEFVEARQDGETILA 659 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL + AP VGTGME Sbjct: 660 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTSSAPIVGTGME 719 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ A+R G++E+VD I I + +D Y L K R+NQNT Sbjct: 720 RIIARDAWEAVKARRGGVIEKVDNKSIFILGEDEK----GPFIDHYSLEKNLRTNQNTNY 775 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 776 VQHPIVKKGDVVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 835 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV E+ + ++DE GI +G + PG ILVG Sbjct: 836 DTFTSVHIYEKEIEARELKDGVEEITKDIPNVKEDDVAHLDESGIAKIGTHIKPGMILVG 895 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 896 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 955 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEIL----CGQNAVSGPKGFKKSTVLSSDL 1012 + ++ +L ++ D +++DR R+ +L G K +KK +S + Sbjct: 956 LKSYDKEKIVLEKEYHDRLLMMDREEMLRVYALLAKAPLNSEQKVGSKTYKKGQKVSKED 1015 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R ++VQ+ E LK ++ K + K+E ++ D +P GV+ Sbjct: 1016 LEKVNRFILTSLIKAYSKEVQKQYEDLKNHFQNEKKKFKAEHDEKLEILEKDDILPSGVV 1075 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1076 KLVKIYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1135 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG++I+ L D K I LR + ++ + + Sbjct: 1136 NIGQILESHLGLVGLKLGEQIQEL-FDKKQKDFIKSLRKKMLEICSIPRLANEKAFVESL 1194 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV +TPVF+G + E + +MA +D G++ LYDG TGE Sbjct: 1195 SDEELLNYARDWSKGVKFATPVFEGVNIEEFAELFKMAKVDMDGKTELYDGRTGEKIAER 1254 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1255 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1314 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1315 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1374 Query: 1369 KNS 1371 +N Sbjct: 1375 ENE 1377 >gi|254797031|ref|YP_003081868.1| DNA-directed RNA polymerase, beta subunit [Neorickettsia risticii str. Illinois] gi|254590263|gb|ACT69625.1| DNA-directed RNA polymerase, beta subunit [Neorickettsia risticii str. Illinois] Length = 1358 Score = 1373 bits (3553), Expect = 0.0, Method: Composition-based stats. Identities = 646/1369 (47%), Positives = 916/1369 (66%), Gaps = 36/1369 (2%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 D PDL++VQK SY F+ A + F SVFP+ G A LEFVS Sbjct: 14 FDFPDLVKVQKDSYASFVGGGDAVSS-----INDIFASVFPVNDGYGRASLEFVSCRMGE 68 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEF-------TGAKSIKDIKEQSIYMGDLP 136 PK D C+ R +TY+ PL+ LRL+VF + + ++KD++EQ IYMGD+P Sbjct: 69 PKHDEYGCVERGITYSAPLRAILRLVVFGDETSGEGGEGVSTEPAVKDVREQEIYMGDIP 128 Query: 137 LMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEF 196 +M+K+GTF+I G++R+VVSQ+HR+PG+ FD+DK R+ +SGKL Y RIIP +G W+D EF Sbjct: 129 IMSKNGTFIINGVERVVVSQMHRAPGVFFDNDKARS-ISGKLNYIARIIPYRGSWLDFEF 187 Query: 197 DSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMV 256 D+KD+++ RID++RK+PVT L ALG+ +++I + F D + Sbjct: 188 DAKDVLYFRIDKKRKLPVTLLLRALGLSNKDIFAQFCEVSECRLTKDGKWTVCFVPERFK 247 Query: 257 GAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGE 316 G ++ L++ +TGE V+ G +++ L ++L KG+++ + + + +Y+A+D+V+ + Sbjct: 248 GVRLQYDLINAETGELVLAKGNRISIVLARNLYAKGLRYCYMDLEVMKDMYLADDLVSAK 307 Query: 317 TGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLD 376 GE+ + G + ++ + ++ ++ I ++ + YI +T++ ++A+L Sbjct: 308 -GEVLLPHGTRLTKEHVAKLEFLDVDSIKLVEL----KGNYIFSTVLQYDC-SYEEAMLS 361 Query: 377 IYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDI 436 IYRV+RPG++ + AE +F LFF ++YDL VGR+++N + NL + + + KEDI Sbjct: 362 IYRVIRPGEIPSIESAEKLFESLFFSPERYDLLNVGRIRLNAKFNLSHDESLTVLTKEDI 421 Query: 437 IAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDID 496 ++ L L+ G +DDID+LGNRRVRSVGE + NQ+R+GL+RM + I E +++ D D Sbjct: 422 FCTVRELALLQREVGDVDDIDHLGNRRVRSVGEFMDNQFRIGLVRMAKVIVENMATADFD 481 Query: 497 SVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGV 556 +VMP ++IN+K + + + EFF SS LSQ + N LS ITH RR+SALG GG+ R RAG Sbjct: 482 TVMPCEMINSKILGAVIREFFMSSALSQFMDQTNPLSEITHKRRISALGPGGLNRGRAGF 541 Query: 557 EMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVY 616 E+RDVH THYGRIC ET EG IGL++SL +A++N YGFIETPYR V DG+VT++V Y Sbjct: 542 EVRDVHTTHYGRICATETPEGATIGLINSLAIYAKINKYGFIETPYRYVRDGRVTDEVTY 601 Query: 617 LSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAA 676 LSA++E I QA+ +DE+G ++LV+CR E + +PR ++ F D S KQ+VS+AA Sbjct: 602 LSAIDEIKANICQASVRVDEEGYILDDLVYCRRNYENVFIPRSEVQFADVSAKQIVSVAA 661 Query: 677 SLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 SLIPFLENDD+NR LMG NMQRQAVPL+ EAP VGTGME VA+ SGA IVAKRAGIV+ Sbjct: 662 SLIPFLENDDANRALMGSNMQRQAVPLIVPEAPLVGTGMEGYVARGSGAVIVAKRAGIVQ 721 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 +DA IV+ S +D Y L KF++SN NTC++QR +V G V++ DI+AD Sbjct: 722 YIDARNIVVASES----KDDFWIDSYTLCKFRKSNHNTCIHQRCVVYQGQRVKKGDILAD 777 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 GP+ G+LALGRN++VAF+ W GYNFEDS++IS +V +D+FTS+H+E FE + RDT+L Sbjct: 778 GPAIQQGELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSVHLEGFECVVRDTRL 837 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 GPEEITRD+ V+EE L +DE GI CVGA V GD+LVGK+TPK SP+TPEEKLLRAI Sbjct: 838 GPEEITRDVSGVAEEFLHCLDEFGIACVGANVEAGDVLVGKVTPKSSSPVTPEEKLLRAI 897 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 FGEKA+DV+D+SL +P GVSG VVDV++ R GI+K R++ +E++ I+ +D E Sbjct: 898 FGEKAIDVKDSSLYLPPGVSGCVVDVKVLQRRGIEKVGRALLIEKQAIDAEKARRDHELA 957 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 +L IYS L E+L G+ A++ K +++ + + + R WW+ +V + +++ Sbjct: 958 VLTNYIYSLLKEMLVGKVALNTLAPISKGDLITGEALEKIDRESWWKLSVDE---ISSIK 1014 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 L+ ++ + ++ EKI+ DD+ GVL VVKVFVA+K +Q GDKM+GRHGN Sbjct: 1015 LLRQRFVDRFDEINKTYEENFEKIRGDDDLAQGVLMVVKVFVAVKHTLQPGDKMSGRHGN 1074 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG++SRI+P EDMP+L DGTPVDI+LNPLGVPSRMNVGQI ETHLGWA LGKKI L+ Sbjct: 1075 KGVISRIVPAEDMPYLADGTPVDIILNPLGVPSRMNVGQILETHLGWAAYNLGKKISKLL 1134 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 ++ + S + + ++ D ++ + + GVPV+ VF+G Sbjct: 1135 DEGNYSEVKSLILEIYK---NDRKMMARLKRMTDTEIVEYSRSLRRGVPVAASVFEGPKT 1191 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 + I +L +A D SGQ +LYDG+TGE FDR VTVG YMLKL+H+V+DK++ARS GSYS Sbjct: 1192 DEIERLLVLAGKDPSGQEVLYDGVTGEKFDRKVTVGCKYMLKLHHLVNDKIHARSIGSYS 1251 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 L+TQQPLGGKS+ GGQR GEME W +QAYGA + LQEMLTIKSDDVVGR VY+SIV G+ Sbjct: 1252 LITQQPLGGKSHFGGQRFGEMECWALQAYGATFALQEMLTIKSDDVVGRVNVYDSIVRGD 1311 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 + F G PESFNV++ E++AL L+++ + +E DF+ L Sbjct: 1312 NDFYYGVPESFNVMMNELRALCLNVEF-------CSDLERKEDFSDLPL 1353 >gi|305433033|ref|ZP_07402189.1| DNA-directed RNA polymerase subunit beta [Campylobacter coli JV20] gi|304443734|gb|EFM36391.1| DNA-directed RNA polymerase subunit beta [Campylobacter coli JV20] Length = 1375 Score = 1372 bits (3551), Expect = 0.0, Method: Composition-based stats. Identities = 610/1385 (44%), Positives = 884/1385 (63%), Gaps = 39/1385 (2%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F + I+IP+L+++QKAS+D+FL + G++ FKS+FPI Sbjct: 7 RNRLRVDFSNISKQIEIPNLLQLQKASFDYFLNLE-----NGESGIEKVFKSIFPIHDPQ 61 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQ 128 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K IKDIKEQ Sbjct: 62 NRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGIKDIKEQ 121 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 IY+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ ++ KL+Y +IIPD+ Sbjct: 122 EIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVVN-KLVYTAQIIPDR 180 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + Sbjct: 181 GSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTE 240 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +D M ++ + D + G + ++GK+LT + L + G+K++ + L Y+ Sbjct: 241 FNPSDFM--DRIEYDIKD-EKGNIIHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYL 297 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 298 ANPIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFEIANDLANGVDAAIINSFAQDNET 355 Query: 369 ------------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KM Sbjct: 356 LKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKM 415 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ Sbjct: 416 NHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELH 475 Query: 477 LGLLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 LGL +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS Sbjct: 476 LGLAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSE 535 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN Sbjct: 536 VTHKRRLSALGEGGLVKERAGFEVRDVHSTHYGRICPVETPEGQNIGLINTLSTYAKVNE 595 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GF+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE I Sbjct: 596 LGFVEAPYRKVANGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETI 655 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTG Sbjct: 656 LARREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTG 715 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 716 MEQIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNT 771 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ Sbjct: 772 NYIQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERII 831 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG IL Sbjct: 832 REDTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMIL 891 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++ Sbjct: 892 VGKVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDD 951 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSS 1010 R+I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 952 RAIKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADI 1011 Query: 1011 DLISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + + R +++Q+ + LK ++ K L+ K+E ++ D +P G Sbjct: 1012 SELEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSG 1071 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V+++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPS Sbjct: 1072 VIKLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPS 1131 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKIS 1186 RMN+GQI E+HLG + LG +I+ + D K + LR+ + ++ + E I Sbjct: 1132 RMNIGQILESHLGLVGLRLGDQIQEI-FDRKQKDFVKELRAKMLEICSIPRLVNEKEFIK 1190 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + D+ +L A W GV +TPVF+G + E + +A +D G++ LYDG TGE Sbjct: 1191 NLSDEELLNYARDWSKGVKFATPVFEGVNIEEFAKLFEIAKIDMDGKTELYDGRTGEKIA 1250 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYG Sbjct: 1251 ERVHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYG 1310 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AA+ L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1311 AAHTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDK 1370 Query: 1367 RTKNS 1371 N Sbjct: 1371 DEDNE 1375 >gi|283954231|ref|ZP_06371755.1| DNA-directed RNA polymerase beta chain [Campylobacter jejuni subsp. jejuni 414] gi|283794249|gb|EFC32994.1| DNA-directed RNA polymerase beta chain [Campylobacter jejuni subsp. jejuni 414] Length = 1375 Score = 1371 bits (3549), Expect = 0.0, Method: Composition-based stats. Identities = 609/1383 (44%), Positives = 883/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 9 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 63 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 64 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 123 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 124 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 182 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRK PVT ALG ++I+ FYP + D + + Sbjct: 183 WLYFEYDAKDVLYVRINKRRKTPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 242 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 243 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 299 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 300 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 357 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 358 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 417 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 418 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 477 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 478 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTILEFFTGGQLSQFMDQTNPLSEVT 537 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 538 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 597 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 598 FVEAPYRKVENGKVTNEVVYLTATQEEGLFIAPASTKIDAKGNIVEEFVEARQDGETILA 657 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 658 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 717 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + S +D Y + K R+NQNT Sbjct: 718 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GSFIDHYTMEKNLRTNQNTNY 773 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADG S D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 774 IQHPIVKKGDVVKAGQIIADGSSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 833 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG ILVG Sbjct: 834 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVG 893 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 894 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 953 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK + Sbjct: 954 IKSYDKEKMALEKEHHDRLLMIDREEMLRVCSLLSKAPLNSDQKIGDKNYKKGQTADTSE 1013 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ ++LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1014 LEKINRFTLTTLIKAYSKEIQKEYDNLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1073 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1074 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1133 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG---TGSHTEKISDY 1188 N+GQI E+HLG + LG +I+ + + K I LR + ++ S E I Sbjct: 1134 NIGQILESHLGLIGLRLGDQIQEI-FNRKQKDFIKELRIKMLEICSIPRLSSEKEFIKSL 1192 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV +TPVF+G + E + + MA +D G++ LYDG TGE Sbjct: 1193 SDEELLNYARDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAER 1252 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSL+TQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1253 VHVGCMYMLKLHHLVDEKVHARSTGPYSLITQQPVGGKALFGGQRFGEMEVWALEAYGAA 1312 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1313 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1372 Query: 1369 KNS 1371 N Sbjct: 1373 DNE 1375 >gi|88597126|ref|ZP_01100362.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|88190815|gb|EAQ94788.1| DNA-directed RNA polymerase, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] Length = 1375 Score = 1371 bits (3549), Expect = 0.0, Method: Composition-based stats. Identities = 610/1383 (44%), Positives = 884/1383 (63%), Gaps = 39/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + I+IP+L+++QK S+D+FL ++ G++ FKS+FPI Sbjct: 9 RLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD-----NGESGIEKVFKSIFPIHDPQNR 63 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RL + + DE TG K +KDIKEQ I Sbjct: 64 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEI 123 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 124 YIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVAN-KLVYTAQIIPDRGS 182 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + D + + Sbjct: 183 WLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTEFN 242 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D + G+ V ++GK+LT + L + G+K++ + L Y+A Sbjct: 243 PNDFM--DRIEYDIKD-EKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLAN 299 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ ++ ++DE L +I + I + +A I N+ D Sbjct: 300 PIIDKESGEVLFDSLTLLDESKLAKIKEQ--KSFDIANDLANGVDAAIINSFAQDGETLK 357 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A++ N LFF+ ++YDL+ VGR+KMN Sbjct: 358 LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH 417 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 418 KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG 477 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N LS +T Sbjct: 478 LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT 537 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 538 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG 597 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R GE IL Sbjct: 598 FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA 657 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP VGTGME Sbjct: 658 RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME 717 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+NQNT Sbjct: 718 QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTNQNTNY 773 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SER++ E Sbjct: 774 IQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRE 833 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT+DIPNV EE + +++E GI +G + PG ILVG Sbjct: 834 DTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLEESGIAKIGTHIKPGMILVG 893 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K++R+ Sbjct: 894 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRA 953 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLSSDL 1012 I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 954 IKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISE 1013 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + R +++Q+ + LK ++ K L+ K+E ++ D +P GV+ Sbjct: 1014 LEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVI 1073 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLGVPSRM Sbjct: 1074 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRM 1133 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG +I+ + D K + LR+ + ++ + E I Sbjct: 1134 NIGQILESHLGLVGLRLGDQIQEI-FDRKQKDFLKELRAKILEICSIPRLANEKEFIKSL 1192 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV STPVF+G + E + + +MA +D G++ LYDG TGE Sbjct: 1193 SDEELLNYARDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAER 1252 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1253 VHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1312 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1313 HTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDE 1372 Query: 1369 KNS 1371 N Sbjct: 1373 DNE 1375 >gi|88608380|ref|YP_506556.1| DNA-directed RNA polymerase, beta subunit [Neorickettsia sennetsu str. Miyayama] gi|109904440|sp|Q2GD90|RPOB_NEOSM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|88600549|gb|ABD46017.1| DNA-directed RNA polymerase, beta subunit [Neorickettsia sennetsu str. Miyayama] Length = 1358 Score = 1371 bits (3548), Expect = 0.0, Method: Composition-based stats. Identities = 641/1356 (47%), Positives = 906/1356 (66%), Gaps = 29/1356 (2%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 D PDL++VQK SY F+ + F SVFP+ G A LEFVS Sbjct: 14 FDFPDLVKVQKDSYASFVGGGDTVFSISD-----IFASVFPVNDGYGRASLEFVSCRMGE 68 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-------IKDIKEQSIYMGDLP 136 PK D C+ R +TY+ PL+ LRL+VF + +KD++EQ IYMGD+P Sbjct: 69 PKHDEYGCVERGITYSAPLRAILRLVVFGDETSGEGSEGVSTEPAVKDVREQEIYMGDIP 128 Query: 137 LMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEF 196 +M+K+GTF+I G++R+VVSQ+HR+PG+ FD+DK R+ +SGKL Y RIIP +G W+D EF Sbjct: 129 IMSKNGTFIINGVERVVVSQMHRAPGVFFDNDKARS-ISGKLNYIARIIPYRGSWLDFEF 187 Query: 197 DSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMV 256 D+KD+++ RID++RK+PVT L ALG+ +++I + F D + Sbjct: 188 DAKDVLYFRIDKKRKLPVTFLLRALGLSNKDIFAQFCEVSECRLTKDGKWTVCFVPEKFK 247 Query: 257 GAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGE 316 G ++ L++ +TGE V+ G +++ L ++L KG+++ + + + +Y+A+D+V+ + Sbjct: 248 GVRLQYDLINAETGELVLAKGNRISIVLARNLYAKGLRYCYMDLEVMKDMYLADDLVSTK 307 Query: 317 TGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLD 376 GE+ + G + ++ + ++ ++ I ++ + + V + ++A+L Sbjct: 308 -GEVLLPHGTKLTKEHVAKLEFLDVDSIKLVELKGNYVFS-----TVLQYDCSYEEAMLS 361 Query: 377 IYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDI 436 IYRV+RPG++ + AE +F LFF ++YDL VGR+++N + NL + + + KEDI Sbjct: 362 IYRVVRPGEIPSVESAEKLFESLFFSPERYDLLNVGRIRLNAKFNLSHDESLTVLTKEDI 421 Query: 437 IAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDID 496 +K L L+ G +DDID+LGNRRVRSVGE + NQ+R+GL+RM + I E +++ D D Sbjct: 422 FCTVKELALLQREVGDVDDIDHLGNRRVRSVGEFMDNQFRIGLVRMAKVIVENMATADFD 481 Query: 497 SVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGV 556 +VMP ++IN+K + + + EFF SS LSQ + N LS ITH RR+SALG GG+ R RAG Sbjct: 482 TVMPCEMINSKILGAVIREFFMSSALSQFMDQTNPLSEITHKRRISALGPGGLNRGRAGF 541 Query: 557 EMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVY 616 E+RDVH THYGRIC ET EG IGL++SL +A++N YGFIETPYR V DG+VT++V Y Sbjct: 542 EVRDVHTTHYGRICATETPEGATIGLINSLAIYAKINKYGFIETPYRYVRDGRVTDEVTY 601 Query: 617 LSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAA 676 LSA++E I QA+ +DE+G ++LV+CR E + +PR ++ F D S KQ+VS+AA Sbjct: 602 LSAIDEIKANICQASVRVDEEGYIVDDLVYCRRNYENVFIPRSEVQFADVSAKQIVSVAA 661 Query: 677 SLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 SLIPFLENDD+NR LMG NMQRQAVPL+ EAP VGTGME VA+ SGA IVAKRAG+V+ Sbjct: 662 SLIPFLENDDANRALMGSNMQRQAVPLIMPEAPLVGTGMEGYVARGSGAVIVAKRAGVVQ 721 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 +DA IV+ S +D Y L KF++SN NTC++QR +V G V++ DI+AD Sbjct: 722 YIDARNIVVASES----KDDFWIDSYTLCKFRKSNHNTCIHQRCVVHQGQRVKKGDILAD 777 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 GP+ G+LALGRN++VAF+ W GYNFEDS++IS +V +D+FTS+H+E FE + RDT+L Sbjct: 778 GPAIQKGELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSVHLEGFECVVRDTRL 837 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 GPEEITRD+ V+EE L +DE GI CVGA V GD+LVGK+TPK SP+TPEEKLLRAI Sbjct: 838 GPEEITRDVSGVAEEFLHCLDEFGIACVGANVEAGDVLVGKVTPKSSSPVTPEEKLLRAI 897 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 FGEKA+DV+D+SL +P GVSG VVDV++ R GI+K R++ +E++ I+ +D E Sbjct: 898 FGEKAIDVKDSSLYLPPGVSGCVVDVKVLQRRGIEKVGRALLIEKQAIDAEKTRRDHELA 957 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 +L IYS L E+L G+ A+S K +++ + + + R WW+ +V +++ Sbjct: 958 VLTNYIYSLLKEMLVGKVALSTLAPISKGDLITEEALEKIDRENWWKISVDG---ISSIK 1014 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 L+ ++ + ++ EKI+ DD+ GVL VVKVFVA+K +Q GDKM+GRHGN Sbjct: 1015 LLRQRFVDRFDEINKTYEENFEKIRGDDDLAQGVLMVVKVFVAVKHTLQPGDKMSGRHGN 1074 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG++SRI+P EDMP+L DGTPVDI+LNPLGVPSRMNVGQI ETHLGWA LGKKI L+ Sbjct: 1075 KGVISRIVPAEDMPYLADGTPVDIILNPLGVPSRMNVGQILETHLGWAAYNLGKKISKLL 1134 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 ++ + S + + ++++ D ++ + + GVPV+ VF+G Sbjct: 1135 DEGNYSEVKSLVLEIYK---NDRKMMARLNEMTDAEIVEYSRSLRGGVPVAASVFEGPKT 1191 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 + I +L +A D SGQ +LYDG+TGE FDR VTVG YMLKL+H+V+DK++ARS GSYS Sbjct: 1192 DEIERLLVLAGKDPSGQEVLYDGVTGEKFDRKVTVGCKYMLKLHHLVNDKIHARSIGSYS 1251 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 L+TQQPLGGKS+ GGQR GEME W +QAYGA + LQEMLTIKSDDVVGR VY+SIV G+ Sbjct: 1252 LITQQPLGGKSHFGGQRFGEMECWALQAYGATFALQEMLTIKSDDVVGRVNVYDSIVRGD 1311 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 + F G PESFNV++ E++AL L+++ + K Sbjct: 1312 NDFYYGVPESFNVMMNELRALCLNVEFCSDLEKKKD 1347 >gi|32265860|ref|NP_859892.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter hepaticus ATCC 51449] gi|41017664|sp|Q7VJ82|RPOBC_HELHP RecName: Full=Bifunctional DNA-directed RNA polymerase subunit beta-beta'; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=RNA polymerase beta'; AltName: Full=Transcriptase subunit beta' gi|32261909|gb|AAP76958.1| DNA-dependent RNA polymerase beta subunit [Helicobacter hepaticus ATCC 51449] Length = 2894 Score = 1370 bits (3547), Expect = 0.0, Method: Composition-based stats. Identities = 614/1413 (43%), Positives = 899/1413 (63%), Gaps = 48/1413 (3%) Query: 7 FNG-LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 F R+R F KNP+ ID+P+L+ +Q+ SYD FL ++ G++ FKSVFPI Sbjct: 4 FTKLKNRLRADFTKNPQSIDVPNLLLLQRNSYDDFLCVDSD----KESGIERVFKSVFPI 59 Query: 66 TAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKD 124 LE+VS +F PK+ ++ + R +TYAV L+I +RL++++ DE TG + IKD Sbjct: 60 QDSQNRITLEYVSCKFGKPKYTTNEAMVRGVTYAVSLQIKIRLVLWEKDEKTGERLGIKD 119 Query: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRI 184 KEQ+I++ D+PLMT +F+I G++R+VV+QLHRSPG+ F ++ ++ S KL+Y +I Sbjct: 120 AKEQNIFVRDIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEES-SASSNKLIYTGQI 178 Query: 185 IPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDF 244 IPD+G W+ E+DSKD+++ RI++RRKVPVT L A+G ++IL FYP + Sbjct: 179 IPDRGSWLYFEYDSKDVLYARINKRRKVPVTIILRAMGYSKQDILKIFYPLQRVKYKKGK 238 Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLC 304 + P + G + + D G ++ SGK+L++ +K LKE + + + L Sbjct: 239 YLIPFDVDSI--GNRAEFDIKDAK-GNLLVSSGKRLSTKKIKELKEAKIDLIEYPLENLT 295 Query: 305 GLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVT 364 ++AE I+N + GE+ + +DE L+++ +I + I + + I N+ + Sbjct: 296 NKFLAEPIINAQ-GEVLFDTLTQLDESKLKKLLELKINEFVIANASAAGVDNSIINSFMA 354 Query: 365 DKNK------------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVG 412 D + + A + IY+VMRPG+ T VA+S LFFD ++YDL+ VG Sbjct: 355 DAESLKMLRQSEKIDDENELAAIRIYKVMRPGEPVTKEVAKSFVRQLFFDPERYDLTRVG 414 Query: 413 RVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLK 472 R+KMN +L ++ PD V + EDII I+ L+ ++NG G IDD D+LGNRR+RS+GE+L Sbjct: 415 RMKMNHKLQINVPDYVTVLTHEDIIRTIQYLLKVKNGLGKIDDRDHLGNRRIRSIGELLA 474 Query: 473 NQYRLGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 N+ GL++M+++I+++++S+ D++MP DLIN K + S + EFF QLSQ + N Sbjct: 475 NELHTGLVKMQKAIRDKLTSLSGAFDTIMPHDLINGKMITSTIMEFFTGGQLSQFMDQTN 534 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L+++ Sbjct: 535 PLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTYT 594 Query: 591 RVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA 650 RVN GFIE PYRKV +G V+ ++VYL+A +EE IA A++++D++G E+L+ R Sbjct: 595 RVNDLGFIEAPYRKVENGIVSQEIVYLTAAQEEGIVIAPASTAVDKNGHIIEDLIETRKD 654 Query: 651 GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF 710 GE IL + ++ ID SP+ +V +AASLIPFLE+DD+NR LMG NMQRQAVPLLK +AP Sbjct: 655 GEIILSEKSRVQLIDLSPRMLVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKPDAPV 714 Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRS 770 VGTG+E ++A+ S A A R+G+VE+VDA I I + + + +D Y L K R+ Sbjct: 715 VGTGIEQIIARDSWEATKATRSGVVERVDAKNIYILGEDD----NGAYIDHYHLGKNLRT 770 Query: 771 NQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS 830 NQNTC +Q+P+V+ GD V + IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++S Sbjct: 771 NQNTCFSQQPIVRQGDRVEQGQIIADGPSMDNGELALGKNIRVAFMPWNGYNFEDAIVVS 830 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 ER++ ED FTSIHI E E+ AR+ K G EEIT DIP E ++DE GI+ +G V+ Sbjct: 831 ERLIKEDAFTSIHIYEKEIEARELKHGLEEITADIPGTKEAETAHLDESGIVRIGTYVSA 890 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 G ILVGK++PKGE TPEE+LLRAIFGEKA V + SL P + GTVVDV+IF + G Sbjct: 891 GMILVGKVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKIFTKKGY 950 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS----GPKGFKKST 1006 +K+ R+IS E+ +L + D ++ + R+ +L + +S K FKK Sbjct: 951 EKDARAISAYEEEKRVLDIEHHDRLTMIQQEETLRISLMLSKEKLLSEVKVADKVFKKGA 1010 Query: 1007 VLSSDLISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD 1065 + + +S +++Q E +K + K L + + K+ ++ D Sbjct: 1011 QIPKEELSVLNPFILSTLIKHYPKEIQTRYEQIKTNFLEQKKTLGEEHEEKLSILEKDDI 1070 Query: 1066 MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPL 1125 +P GV+++VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPL Sbjct: 1071 LPSGVVKLVKIYIATKRKLKVGDKMAGRHGNKGIVSNIVPMVDMPYTADGEPVDIVLNPL 1130 Query: 1126 GVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI-----GTGS 1180 GVPSRMN+GQI E HLG LG++I+ ++ ++ + LRS + ++ S Sbjct: 1131 GVPSRMNIGQILEVHLGLVGKRLGQQIQEIL-SSQSKQWLDTLRSKMIEIAQVVNSDDKS 1189 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGL 1240 E + + D++++L A W +GV + PVF+G ++E + + + +D G++ LYDG Sbjct: 1190 MIEFLKNLDNEALLAYARDWSNGVKFAIPVFEGIEQEKFDKLFSLVKVDMDGKTELYDGK 1249 Query: 1241 TGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVW 1300 TGE V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW Sbjct: 1250 TGEKMRERVNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVW 1309 Query: 1301 CIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLS 1360 ++AYGAA+ L+EMLTIKSDD GR Y++I G E+ PE+F VL KE+Q+L L Sbjct: 1310 ALEAYGAAHTLKEMLTIKSDDTEGRRGAYKAITKGEHVGESEIPETFYVLTKELQSLALD 1369 Query: 1361 IDLENSRTKN--------SAKMEEIPDFNKCEL 1385 +++ + E DF+ +L Sbjct: 1370 VNIYGDEQDENGMPVPIAIKEDERPKDFSSFQL 1402 >gi|255322044|ref|ZP_05363192.1| DNA-directed RNA polymerase, beta subunit [Campylobacter showae RM3277] gi|255300857|gb|EET80126.1| DNA-directed RNA polymerase, beta subunit [Campylobacter showae RM3277] Length = 1378 Score = 1370 bits (3546), Expect = 0.0, Method: Composition-based stats. Identities = 604/1382 (43%), Positives = 885/1382 (64%), Gaps = 35/1382 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + ID+P+L+++QK S+D FL ++ + G++ FKS+FPI Sbjct: 10 RLRVDFSNVAKEIDVPNLLQLQKKSFDQFLNVD---KNQGESGIEKVFKSIFPIHDPQNR 66 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSI 130 LE+VS E PK+ + +C+ R LTY+V LK+ +RLIV + DE TG K IKDIKEQ I Sbjct: 67 LSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLIVHERDEKTGEKIGIKDIKEQEI 126 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ ++ KL+Y +IIPD+G Sbjct: 127 FVREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEESPTVVN-KLIYTAQIIPDRGS 185 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG ++I+ FYP + + + + P + Sbjct: 186 WLYFEYDTKDVLYVRINKRRKVPVTILFRALGYKKQDIIKLFYPIQTLTIKDNKFLTPFN 245 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D +V + D + G + E+GK+LT + GVKF+ ++ L ++A Sbjct: 246 PDDY--QGRVEYDIKD-EEGNVLHEAGKRLTKKKADKIIADGVKFVEYPTEILVNRFLAH 302 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 +++ +GE+ + +DE L +I ++ I I + + I N+ + D Sbjct: 303 PVIDKNSGEVLYDTLAQLDENKLVKIL-ADQESIEIANDLAAGVDDAIINSFIADNETLK 361 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A + N LFF+ ++YDL+ VGR+KMN Sbjct: 362 LLRQTENVDDENDLAAIRIYKVMRPGEPVVKDAARAFVNDLFFNPERYDLTGVGRMKMNH 421 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + EDII K L+ ++NG+G IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 422 KLALEVPEYVTVLTNEDIIKTAKYLIKVKNGQGHIDDRDHLGNRRIRSIGELLANELHLG 481 Query: 479 LLRMERSIKERISS-VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 ++M+++I+++ ++ + + +MP DL+N K + + + EFF QLSQ + N LS +TH Sbjct: 482 FVKMQKAIRDKFTTLGNTEEIMPYDLVNPKMITTTIMEFFTGGQLSQFMDQTNPLSEVTH 541 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L+++A+VN GF Sbjct: 542 KRRLSALGEGGLVKDRAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLSTYAKVNNLGF 601 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 +E PY+KV DGKVT+++VYL+A +EEN IA A+++LDE G E+L+ R GE IL Sbjct: 602 VEAPYKKVVDGKVTDEIVYLTATQEENLVIAPASTALDESGYIVEDLIEARQDGEMILAK 661 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 RE + ID + +AASLIPFLE+DD+NR LMG NMQRQAVPLL++ AP VGTGMES Sbjct: 662 REDVKLIDLCSGMIAGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRSSAPIVGTGMES 721 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VA+ + AI A+RAG+VE+VD I I + + +D Y + K R+NQNT + Sbjct: 722 TVARDAWEAIKARRAGVVEKVDNKNIFILGEDE----AGPYIDHYSMEKNLRTNQNTTFS 777 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q P+VK G+ V IIADGPS + G+LA+G+N L+AFMPW+GYN+ED+++ISE+M+ ED Sbjct: 778 QHPIVKKGESVAAGQIIADGPSMERGELAIGKNALIAFMPWNGYNYEDAIVISEKMIRED 837 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 FTS+HI E E+ AR+ K G EEIT+DIPN+ EE L ++D+ GII +G +V PG ILVGK Sbjct: 838 AFTSVHIYEKEIEARELKDGVEEITKDIPNIKEEDLLHLDDSGIIKIGTQVKPGMILVGK 897 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 ++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G +K+ RS Sbjct: 898 VSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASMEGVVVDVKIFTKKGHEKDNRSN 957 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS----GPKGFKKSTVLSSDLI 1013 V E+ ++ D ++LDR ++ +LC S G K +KK + + Sbjct: 958 KVYEEEKAAFEKEHHDRLLMLDREEMLKVGALLCKTPLSSAQTIGKKTYKKGEKIDKEEF 1017 Query: 1014 SEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLR 1072 R + VQ++ + +K ++ K L++ K+E ++ D +P GV++ Sbjct: 1018 ENINRFTLSAIVKGFSKDVQKSYDDIKNHFQNEKKKLKEEHDAKMEILEKDDILPSGVVK 1077 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 +VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L G PVDIVLNPLGVPSRMN Sbjct: 1078 LVKVYIATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYLPSGQPVDIVLNPLGVPSRMN 1137 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDYD 1189 +GQI E+HLG LG++I + K I LR+ + ++ + + Sbjct: 1138 IGQILESHLGLVGYRLGEQINQI-FQEKKGEWIKELRAKMIEIASASKFMDAKKTLGKMS 1196 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 D+ +L A W +GV +TP+F+G + + + +A +D G++ LYDG TG V Sbjct: 1197 DEQLLDYARDWANGVKFATPIFEGVRVDELMKLFELAKIDMDGKTELYDGRTGSKIKERV 1256 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA+ Sbjct: 1257 NVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAH 1316 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 L+EMLT+KSDDV GR Y+++ G + ETG PE+F VL E+++L L +++ + Sbjct: 1317 TLREMLTVKSDDVEGRLSAYKALTRGENVPETGIPETFFVLTNELKSLALDVEIYDEDEN 1376 Query: 1370 NS 1371 N Sbjct: 1377 NE 1378 >gi|149195228|ref|ZP_01872318.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT RPOB [Caminibacter mediatlanticus TB-2] gi|149134661|gb|EDM23147.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT RPOB [Caminibacter mediatlanticus TB-2] Length = 1379 Score = 1369 bits (3544), Expect = 0.0, Method: Composition-based stats. Identities = 602/1385 (43%), Positives = 894/1385 (64%), Gaps = 38/1385 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+I+DIP+L+ +Q+ S+ F+ + G+ FKS+FPIT Sbjct: 10 RLRLDFSKIPQILDIPNLLHLQQNSFKDFINIEEP----EKSGIHKVFKSMFPITDAQNR 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSI 130 LE+V EF PK+ V +C+ + LTY++P+KI +RLIV + DE TG K IKDIKEQ++ Sbjct: 66 ITLEYVGIEFKKPKYTVRECMEKGLTYSIPIKIKVRLIVHERDEKTGEKIGIKDIKEQTL 125 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ D+PLMT+ +F+I G++R++V+QLHRSPG+ F ++ + S KLLY+ +IIPD+G Sbjct: 126 FIRDIPLMTERTSFIINGVERVIVNQLHRSPGVIFKQEEAQN--SNKLLYSAQIIPDRGS 183 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D KD+++VR+++RRKVPVT L A+ E+IL FYP + + + P + Sbjct: 184 WVYFEYDVKDVLYVRVNKRRKVPVTILLRAMDYSKEDILKLFYPILDIIVKNGKFLMPST 243 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 + K+ L D D G +I +GK++T LK ++EK +F+ + L ++AE Sbjct: 244 QLE---AGKLDYDLKDED-GNIIIPAGKRITRRKLKEIQEKY-EFVEYPLELLFDRHLAE 298 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN--- 367 I + TGE+ + +++E L++I S+I + I+ + + I D Sbjct: 299 PIYDPLTGEVLFDTLTILNEVKLKKIVESQINEFKIVNDLADGVDDGILRAFHQDIETLK 358 Query: 368 ---------KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ +T A+ +F+ LFFD ++YDL+ VGR+KMN Sbjct: 359 ILKQTEGIENENDLARIRIYKVMRPGEPATPQTAKELFDKLFFDPERYDLTKVGRMKMNH 418 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ PDDV + +DII I+ L+ +RNG G IDD D+LGNRR+RS+GE+L N+ + G Sbjct: 419 KLGLNVPDDVTVLTYQDIIKTIQYLIGVRNGIGQIDDRDHLGNRRIRSIGELLANKLQDG 478 Query: 479 LLRMERSIKERIS-SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 L +M+++IK++++ +++ ++P DL+N K V + + +FF + QLSQ + N LS + H Sbjct: 479 LAKMQKTIKDKMTTITNVNELLPMDLVNTKLVTTTILDFFATGQLSQFMDQTNPLSEVAH 538 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG+GGV R RAG E+RDVHP+HYGRICP ET EG NIGLV++L+++A+VN +GF Sbjct: 539 KRRLSALGEGGVTRERAGFEIRDVHPSHYGRICPIETPEGQNIGLVNTLSTYAKVNEFGF 598 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDED-GSFTEELVFCRCAGEEILV 656 IE PYR V DG+VT+++VYL+A +EE + IA A+ +DE G ++L+ R GE +LV Sbjct: 599 IEAPYRVVKDGRVTDEIVYLTATQEEEKVIAPASVKIDEQTGEIIDDLIEARKDGEIVLV 658 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 ++++D D +PK +V + ASLIPFLE+DD+NR LMG NMQRQ VPLL++EAP VGTG+E Sbjct: 659 DKKEVDLYDLNPKMIVGVGASLIPFLEHDDANRALMGSNMQRQGVPLLRSEAPIVGTGIE 718 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 VA+ + + AKR G V +VDA I I + + + +D Y L K+ R+NQNTC Sbjct: 719 KYVARDAWQIVKAKRDGKVIKVDAKNIYILGEDE----NGAYIDHYGLEKYLRTNQNTCF 774 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 +QRP+VKVGD V+ D+IADGP+ D G++ALG+N+LVAFMPW+GYNFED++++SER++ + Sbjct: 775 DQRPIVKVGDVVKAGDVIADGPNMDNGEIALGKNVLVAFMPWNGYNFEDAIVLSERIIRD 834 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DV+TS+HI E R+ K G EE+T DIP V E L ++DE GI+ VG V PG ILVG Sbjct: 835 DVYTSVHIYEEVCEVRELKHGLEELTADIPGVKPEYLSHLDESGIVKVGTYVKPGMILVG 894 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 KI+PKG+ TPEE+LL++IFG+K+ V ++SL P+ + G V+DV+++ + G + +ER+ Sbjct: 895 KISPKGDVKPTPEERLLKSIFGDKSGHVVNSSLYAPASMEGVVIDVKVYTKKGYELDERA 954 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS----GPKGFKKSTVLSSDL 1012 E+ + + ++ I+D L +L + + K FK+ + + Sbjct: 955 KKAYEEEKQKIEDVYKNKLAIIDEEEMIALTTLLSSKPLIKEVALNSKIFKEGEKIPKEE 1014 Query: 1013 ISEYPRSQWWQF-AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + DE+ +R E +K +Y+ K + + KIE ++ D +P GV Sbjct: 1015 LQNINKFLLLSLVEYYDEETKREFEEIKSKYQKEKENIRKEYDEKIEVLERDDILPNGVA 1074 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR I+ GDKMAGRHGNKGIVS I+P EDMP+++DG VD+VLNPLGVPSRM Sbjct: 1075 KMVKVYIANKRKIKVGDKMAGRHGNKGIVSIIVPEEDMPYMEDGRTVDVVLNPLGVPSRM 1134 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKA---NGDISPLRSFLEKVIGTGSHTEKISDY 1188 N+GQI E HLG LG++I+ ++ + + N + ++ ++ + + Sbjct: 1135 NIGQILEVHLGLVGKKLGEQIEEILKEKQDDMMNKLRAKMKEIVKVAHFGEHFEKFLDSL 1194 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 ++ +L+ A W GV STPVF+G EE + MA + E G+ LYDG TGEP Sbjct: 1195 TNEELLKYARDWAKGVKFSTPVFEGVTEEEFKKLFEMAGIPEDGKMQLYDGRTGEPIKER 1254 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+YM+KL+H+V DKV+ARS G YSL+TQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1255 VNVGYMYMMKLHHLVDDKVHARSIGPYSLITQQPVGGKALFGGQRFGEMEVWALEAYGAA 1314 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 Y L+EMLT KSDDV GR + Y ++ G + G E+F VL KE++ALGL ++ Sbjct: 1315 YNLKEMLTTKSDDVEGRNKAYRALTRGENVPIEGLSETFFVLSKELRALGLDLEFYKKEE 1374 Query: 1369 KNSAK 1373 N Sbjct: 1375 DNEEI 1379 >gi|291276552|ref|YP_003516324.1| putative DNA-directed RNA polymerase subunit beta' [Helicobacter mustelae 12198] gi|290963746|emb|CBG39581.1| putative DNA-directed RNA polymerase beta' chain [Helicobacter mustelae 12198] Length = 2883 Score = 1369 bits (3542), Expect = 0.0, Method: Composition-based stats. Identities = 621/1407 (44%), Positives = 891/1407 (63%), Gaps = 45/1407 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F ++ + ++IP+L+ +Q+ SY+ FL + G++ F+SVFPI Sbjct: 8 KNRLRLDFTQSSQNLEIPNLLLLQRDSYNSFLE----SKDGKESGVEKVFRSVFPIQDAQ 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LE+ EF PK+ V + + R +TY++PLKI +RL++ D DE T SIKDIKEQ+ Sbjct: 64 NRLILEYDGCEFGKPKYTVREAMERGITYSIPLKIKIRLLLLDKDEKTEKISIKDIKEQN 123 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 I++ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ S KL+Y +IIPD+G Sbjct: 124 IFIREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESST-TSNKLVYTGQIIPDRG 182 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 W+ E+D+KD + VRI++RRKVP+T L A+G +EIL FYP + + + Sbjct: 183 SWLYFEYDAKDTLFVRINKRRKVPITILLRAMGYTKQEILKIFYPLLKVKIKKEKHFIEF 242 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 + +V + ++D GE V+E+GK+LT + L EKG+ ++ + L Y+A Sbjct: 243 KPENF--EGRVEYDIKNMD-GEVVVEAGKRLTKKKAQELSEKGLGWIEYPA--LIDRYLA 297 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD---- 365 E I++ +TGE+ + IDE L++I I++ I ++ +++ I + D Sbjct: 298 EPIIDPKTGEVLFDILTQIDEGKLKKIMEHRIKEFVIADDLAIGHDSGILKSFHVDADPL 357 Query: 366 --------KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 + A + IY+VMRPG+ T VA+ LFFD ++YDL+ VGR+KMN Sbjct: 358 RMLKQSEKHENENDLAAIRIYKVMRPGEPVTKEVAKQFVKQLFFDPERYDLTRVGRMKMN 417 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +L L+ PD V + +EDII IK L+ ++NG+G IDD D+LGNRR+R++GE+L N+ Sbjct: 418 HKLGLEIPDYVTVLTQEDIIKSIKYLIKVKNGQGRIDDRDHLGNRRIRAIGELLANELHA 477 Query: 478 GLLRMERSIKERISSVDI--DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRI 535 GL++M+++IK+++++ +I +++MP DLIN+K + SA+ EFF QLSQ + N LS + Sbjct: 478 GLVKMQKAIKDKLTTPNINLETLMPLDLINSKMITSAILEFFTGGQLSQFMDQTNPLSEV 537 Query: 536 THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 THKRRLSALGEGGLVKERVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNEL 597 Query: 596 GFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 GFIE PYRKV G VT +VVYL+A +E+ IA A++ LD + + E+L+ R GE L Sbjct: 598 GFIEAPYRKVVQGHVTQEVVYLTATQEDGHIIAPASTKLDANDNIVEDLIDARVGGEITL 657 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 + KI ID SP+ +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL +AP VGTG+ Sbjct: 658 SEKNKITLIDLSPRMLVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLIPDAPIVGTGI 717 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC 775 E ++A+ + AI A R G+VE+VDA I I + + + +D Y L K R+NQNT Sbjct: 718 EKIIARDAWEAIKASRPGVVEKVDAKNIYILGEDE----AGAYIDSYPLQKNLRTNQNTS 773 Query: 776 VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835 QRP+VKVGD+V + IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SE ++ Sbjct: 774 FAQRPIVKVGDKVETHQIIADGPSMDTGELALGKNVRVAFMPWNGYNFEDAIVVSEHLIK 833 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 ED FTS+HI E E+ AR+ K G EEITRDIPNV E+ + ++D+ GI+ +G V+ G ILV Sbjct: 834 EDYFTSVHIYEKEIEARELKHGIEEITRDIPNVREDDIAHLDDSGIVKIGTYVSSGMILV 893 Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNER 955 GK++PKGE TPEE+LLRAIFGEKA V + SL P + GTVVDV+I + G +K+ER Sbjct: 894 GKVSPKGEVKSTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKILTKKGYEKDER 953 Query: 956 SISVEREQIELLARDKDDEQVILDRNIYSRLMEIL----CGQNAVSGPKGFKKSTVLSSD 1011 + S ++ +L + D +LD+ R+ +L G +A K +KK ++ Sbjct: 954 TRSAYEKEKAVLDIEHHDRLTMLDKEERLRINTMLAKEVLGSDADISGKVYKKGEMVPQA 1013 Query: 1012 LISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 I+ R + VQ+ +K + K L + + K+ ++ D +P GV Sbjct: 1014 EIAGISRFALNTLIKSYSKNVQQKYNQIKSNFLEQKKTLGEEHEEKLSILEKDDILPSGV 1073 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 ++ VK++VA KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPSR Sbjct: 1074 VKRVKIYVATKRKLKVGDKMAGRHGNKGIVSNIVPAVDMPYTADGEPVDIVLNPLGVPSR 1133 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK----VIGTGSHTEKIS 1186 MN+GQI E HLG G++I ++ K S LE + ++ Sbjct: 1134 MNIGQILEVHLGLVGKRFGEQILEVLEQQKKGFLKSLRAKMLEISDVINPNDSVMKDLLT 1193 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 DD+ +L A W GV + PVF+G +E + + MA + G++ LYDG TGE Sbjct: 1194 HADDEELLGYARDWSKGVKFAIPVFEGITQEKFHKLFEMAKIQMDGKTDLYDGKTGEKIR 1253 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYG Sbjct: 1254 ERVNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYG 1313 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY L+EMLT+KSDDV GR Y++I G E+ PE+F VL KE+Q+LGL +++ Sbjct: 1314 AAYTLKEMLTVKSDDVKGRENAYKAITKGEAVGESEIPETFYVLTKELQSLGLDVNIFGD 1373 Query: 1367 RTKNS--------AKMEEIPDFNKCEL 1385 + + + DFN +L Sbjct: 1374 DVDENGQPKPIVVEEEKRPKDFNTFQL 1400 Score = 39.3 bits (90), Expect = 4.4, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G VAEDI++ T E+ AG +I+E I I+ + I Sbjct: 2191 GSELIESLEERIFGRVVAEDIIDPITNEVLYSAGILINEDMARHIVEVGIKSVII 2245 >gi|41017780|sp|Q93MK8|RPOB_EHRRI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|15081476|gb|AAK83925.1|AF401089_1 RNA polymerase beta-subunit [Neorickettsia risticii] Length = 1363 Score = 1367 bits (3539), Expect = 0.0, Method: Composition-based stats. Identities = 646/1374 (47%), Positives = 916/1374 (66%), Gaps = 41/1374 (2%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 D PDL++VQK SY F+ A + F SVFP+ G A LEFVS Sbjct: 14 FDFPDLVKVQKDSYASFVGGGDAVSS-----INDIFASVFPVNDGYGRASLEFVSCRMGE 68 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEF-------TGAKSIKDIKEQSIYMGDLP 136 PK D C+ R +TY+ PL+ LRL+VF + + ++KD++EQ IYMGD+P Sbjct: 69 PKHDEYGCVERGITYSAPLRAILRLVVFGDETSGEGGEGVSTEPAVKDVREQEIYMGDIP 128 Query: 137 LMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEF 196 +M+K+GTF+I G++R+VVSQ+HR+PG+ FD+DK R+ +SGKL Y RIIP +G W+D EF Sbjct: 129 IMSKNGTFIINGVERVVVSQMHRAPGVFFDNDKARS-ISGKLNYIARIIPYRGSWLDFEF 187 Query: 197 DSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMV 256 D+KD+++ RID++RK+PVT L ALG+ +++I + F D + Sbjct: 188 DAKDVLYFRIDKKRKLPVTLLLRALGLSNKDIFAQFCEVSECRLTKDGKWTVCFVPERFK 247 Query: 257 GAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGE 316 G ++ L++ +TGE V+ G +++ L ++L KG+++ + + + +Y+A+D+V+ + Sbjct: 248 GVRLQYDLINAETGELVLAKGNRISIVLARNLYAKGLRYCYMDLEVMKDMYLADDLVSAK 307 Query: 317 TGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLD 376 GE+ + G + ++ + ++ ++ I ++ + YI +T++ ++A+L Sbjct: 308 -GEVLLPHGTRLTKEHVAKLEFLDVDSIKLVEL----KGNYIFSTVLQYDC-SYEEAMLS 361 Query: 377 IYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDI 436 IYRV+RPG++ + AE +F LFF ++YDL VGR+++N + NL + + + KEDI Sbjct: 362 IYRVIRPGEIPSIESAEKLFESLFFSPERYDLLNVGRIRLNAKFNLSHDESLTVLTKEDI 421 Query: 437 IAIIKILVDLRNGKGTIDDIDNLGN-----RRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 ++ L L+ G +DDID+LGN RRVRSVGE + NQ+R+GL+RM + I E ++ Sbjct: 422 FCTVRELALLQREVGDVDDIDHLGNSALGLRRVRSVGEFMDNQFRIGLVRMAKVIVENMA 481 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 + D D+VMP ++IN+K + + + EFF SS LSQ + N LS ITH RR+SALG GG+ R Sbjct: 482 TADFDTVMPCEMINSKILGAVIREFFMSSALSQFMDQTNPLSEITHKRRISALGPGGLNR 541 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT 611 RAG E+RDVH THYGRIC ET EG IGL++SL +A++N YGFIETPYR V DG+VT Sbjct: 542 GRAGFEVRDVHTTHYGRICATETPEGATIGLINSLAIYAKINKYGFIETPYRYVRDGRVT 601 Query: 612 NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQV 671 ++V YLSA++E I QA+ +DE+G ++LV+CR E + +PR ++ F D S KQ+ Sbjct: 602 DEVTYLSAIDEIKANICQASVRVDEEGYILDDLVYCRRNYENVFIPRSEVQFADVSAKQI 661 Query: 672 VSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR 731 VS+AASLIPFLENDD+NR LMG NMQRQAVPL+ EAP VGTGME VA+ SGA IVAKR Sbjct: 662 VSVAASLIPFLENDDANRALMGSNMQRQAVPLIVPEAPLVGTGMEGYVARGSGAVIVAKR 721 Query: 732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRN 791 AGIV+ +DA IV+ S +D Y L KF++SN NTC++QR +V G V++ Sbjct: 722 AGIVQYIDARNIVVASES----KDDFWIDSYTLCKFRKSNHNTCIHQRCVVYQGQRVKKG 777 Query: 792 DIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMA 851 DI+ADGP+ G+LALGRN++VAF+ W GYNFEDS++IS +V +D+FTS+H+E FE + Sbjct: 778 DILADGPAIQQGELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSVHLEGFECVV 837 Query: 852 RDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEK 911 RDT+LGPEEITRD+ V+EE L +DE GI CVGA V GD+LVGK+TPK SP+TPEEK Sbjct: 838 RDTRLGPEEITRDVSGVAEEFLHCLDEFGIACVGANVEAGDVLVGKVTPKSSSPVTPEEK 897 Query: 912 LLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDK 971 LLRAIFGEKA+DV+D+SL +P GVSG VVDV++ R GI+K R++ +E++ I+ + Sbjct: 898 LLRAIFGEKAIDVKDSSLYLPPGVSGCVVDVKVLQRRGIEKVGRALLIEKQAIDAEKARR 957 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 D E +L IYS L E+L G+ A++ K +++ + + + R WW+ +V + Sbjct: 958 DHELAVLTNYIYSLLKEMLVGKVALNTLAPISKGDLITGEALEKIDRESWWKLSVDE--- 1014 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 +++ L+ ++ + ++ EKI+ DD+ GVL VVKVFVA+K +Q GDKM+ Sbjct: 1015 ISSIKLLRQRFVDRFDEINKTYEENFEKIRGDDDLAQGVLMVVKVFVAVKHTLQPGDKMS 1074 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRI+P EDMP+L DGTPVDI+LNPLGVPSRMNVGQI ETHLGWA LGKK Sbjct: 1075 GRHGNKGVISRIVPAEDMPYLADGTPVDIILNPLGVPSRMNVGQILETHLGWAAYNLGKK 1134 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I L+++ + S + + ++ D ++ + + GVPV+ VF Sbjct: 1135 ISKLLDEGNYSEVKSLILEIYK---NDRKMMARLKRMTDTEIVEYSRSLRRGVPVAASVF 1191 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 +G + I +L +A D SGQ +LYDG+TGE FDR VTVG YMLKL+H+V+DK++ARS Sbjct: 1192 EGPKTDEIERLLVLAGKDPSGQEVLYDGVTGEKFDRKVTVGCKYMLKLHHLVNDKIHARS 1251 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 GSYSL+TQQPLGGKS+ GGQR GEME W +QAYGA + LQEMLTIKSDDVVGR VY+S Sbjct: 1252 IGSYSLITQQPLGGKSHFGGQRFGEMECWALQAYGATFALQEMLTIKSDDVVGRVNVYDS 1311 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 IV G++ F G PESFNV++ E++AL L+++ + +E DF+ L Sbjct: 1312 IVRGDNDFYYGVPESFNVMMNELRALCLNVEF-------CSDLERKEDFSDLPL 1358 >gi|254458778|ref|ZP_05072202.1| DNA-directed RNA polymerase, beta subunit [Campylobacterales bacterium GD 1] gi|207084544|gb|EDZ61832.1| DNA-directed RNA polymerase, beta subunit [Campylobacterales bacterium GD 1] Length = 1381 Score = 1365 bits (3533), Expect = 0.0, Method: Composition-based stats. Identities = 606/1383 (43%), Positives = 896/1383 (64%), Gaps = 34/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+ I++P+L+++Q++SYD+FLM++ +R G+++ F+SVFPI Sbjct: 10 RLRVDFSKTPQQIEVPNLLQLQQSSYDNFLMLD--AKDRSASGIESVFQSVFPIHDTQNR 67 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 +E++ E PK+ V +C+ R LTYAV L++ RL+++D DE T K +KDIKEQSI Sbjct: 68 LTVEYIGSEVANPKYTVRECMERGLTYAVSLRMKTRLVLWDRDENTKEKLGVKDIKEQSI 127 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ D+PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 128 FVRDIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEES-TTAGNKLIYTGQIIPDRGS 186 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D KDI+++RI++RRKVPVT ALG ++IL FYP S + + + Sbjct: 187 WLYFEYDPKDILYMRINKRRKVPVTIMFRALGYSKQDILKLFYPIQTISIEDNKFTMDFN 246 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 +D A+++ L+DI G+ + +GK+L+ + L + G+K + + L Y+AE Sbjct: 247 PSDFA--ARLTYDLIDI-NGKIHVPAGKRLSVKKAQKLIDDGLKSVEYPLETLIDRYLAE 303 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ ETGEI + IDE L+++ + + + + + I N D + Sbjct: 304 PIIDPETGEILFDTMTHIDETKLKKMTEIGVSEFKVANDLAEGVDRSIINAFNADSDSLK 363 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ T A+ N LFFD ++YDL+ VGR+KMN Sbjct: 364 LLKQTEDIEDENDLAAIRIYKVMRPGEPVTKEAAKVFVNQLFFDPERYDLTKVGRMKMNH 423 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ V + ED+I +K ++ ++NG+G IDD D+LGNRR+RS+GE+L N+ G Sbjct: 424 KLGLNIPEYVTVLTHEDVINSVKYVIKVKNGQGHIDDRDHLGNRRIRSIGELLGNELHNG 483 Query: 479 LLRMERSIKERISSVDID--SVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++I++++S++ +MP DLIN+K + S + EFF QLSQ + N LS +T Sbjct: 484 LIKMQKAIRDKLSTMSGPMAELMPHDLINSKMITSTIMEFFSGGQLSQFMDQTNPLSEVT 543 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L ++++VN +G Sbjct: 544 HKRRLSALGEGGLVKERAGFEVRDVHQTHYGRICPIETPEGQNIGLINTLATYSKVNEHG 603 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PY+ + DGKVTN++VYL+A +EE IA A++ LD++G F + LV R GE +L Sbjct: 604 FIEAPYKVMKDGKVTNEIVYLTATQEEGVKIAAASNKLDDNGQFIDTLVTTRIDGEILLR 663 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P + + D S VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL+ +P VGTG+E Sbjct: 664 PPVECQYADLSSHMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPLSPMVGTGVE 723 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 +VA+ S I AKR+G+VE+VD I + + +D Y L K R+NQNT Sbjct: 724 KLVARDSWECIKAKRSGVVEKVDGKHIYVMGDDD----GEIYIDYYPLQKNLRTNQNTSF 779 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 +Q+P+V VGD V+ +IADGP+ D G+LALG N +VAFMPW+GYNFED+++ISER++ + Sbjct: 780 SQKPIVNVGDLVKTGQVIADGPNMDQGELALGVNAMVAFMPWNGYNFEDAIVISERLIRK 839 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEITRDIPNV ++ L ++DE GI+ +G +VN G ILVG Sbjct: 840 DAFTSVHIYEKELEARELKHGVEEITRDIPNVRDDELVHLDESGIVKIGTQVNGGMILVG 899 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL P + G VVDV+IF + G DK+ R+ Sbjct: 900 KVSPKGEVKPTPEERLLRAIFGEKAGHVINKSLYCPPSMEGVVVDVKIFTKKGYDKDPRA 959 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG----FKKSTVLSSDL 1012 + +E+E+ + L R+ D +++D+ R+ ++L + V+ K +K +++ Sbjct: 960 LELEKEERDYLEREHYDRLLMIDKEEMLRITKLLTKEALVNDIKIGDTAYKAGDIINGAD 1019 Query: 1013 ISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + E R E++Q K ++ K + D + K+ ++ D + GV+ Sbjct: 1020 LVEVNRFAMNAIVKSFSEEIQDEYNKTKNYFQKEKRLFRDEHEEKLNILEKDDILANGVV 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 + VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+++DG VD+ LNPLGVPSRM Sbjct: 1080 KYVKVYIATKRQLKVGDKMAGRHGNKGIVSIIVPEVDMPYMEDGRSVDVCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT---EKISDY 1188 N+GQI E HLG A LG +I + K I LRS + + E I Sbjct: 1140 NIGQILEMHLGMAGRELGNQILEQ-FETKQKDFIDNLRSKMIAIADVAKMMNAVEVIGAM 1198 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ L A W +G+ +TP+F+G + E + + ++A +D G+++LY+G+TGE Sbjct: 1199 SDEKFLHYARDWSNGIRFATPIFEGVNAEEFDKLFKLAKMDADGKTVLYNGMTGEKIKER 1258 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+Y+LKL+H+V +K++ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGA+ Sbjct: 1259 VNVGYMYILKLHHLVDEKIHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAS 1318 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 VL+EMLTIKSDDV GR R Y++I G +G PE+ VL KE+QAL L +++ + Sbjct: 1319 AVLKEMLTIKSDDVDGRVRAYKAITKGELIPASGIPETLFVLTKELQALALDVEIFDEVK 1378 Query: 1369 KNS 1371 + Sbjct: 1379 DDE 1381 >gi|224436425|ref|ZP_03657442.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter cinaedi CCUG 18818] gi|313142939|ref|ZP_07805132.1| bifunctional DNA-directed RNA polymerase subunit beta-beta [Helicobacter cinaedi CCUG 18818] gi|313127970|gb|EFR45587.1| bifunctional DNA-directed RNA polymerase subunit beta-beta [Helicobacter cinaedi CCUG 18818] Length = 2891 Score = 1365 bits (3533), Expect = 0.0, Method: Composition-based stats. Identities = 609/1413 (43%), Positives = 896/1413 (63%), Gaps = 48/1413 (3%) Query: 7 FNG-LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 F R+R F KNP+ ID+P+L+ +Q+ SYD FL ++ G++ FKSVFPI Sbjct: 4 FTKLKNRLRADFTKNPQSIDVPNLLLLQRNSYDDFLCIDGD----KESGIERVFKSVFPI 59 Query: 66 TAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKD 124 LE+ +F PK+ ++ + R +TYA+ L+I +RL++++ DE TG + +KD Sbjct: 60 QDNQNRITLEYAGCKFGKPKYTTNEAMVRGVTYAISLQIKIRLVLWEKDEKTGERLGVKD 119 Query: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRI 184 +KEQ+I++ D+PLMT +F+I G++R+VV+QLHRSPG+ F ++ S KL+Y +I Sbjct: 120 VKEQNIFVRDIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESNT-SSNKLIYTGQI 178 Query: 185 IPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDF 244 IPD+G W+ E+D+KD+++ RI++RRKVPVT L A+G ++IL FYP + Sbjct: 179 IPDRGSWLYFEYDAKDVLYARINKRRKVPVTIILRAMGYSKQDILKIFYPLQKVKYQKGK 238 Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLC 304 + P + G + + D G ++ SGK+L++ +K LKE + + + L Sbjct: 239 YLIPFDIDSI--GTRAEFDIKDSK-GNLLVASGKRLSAKKIKELKEAKIGLIEYPLESLS 295 Query: 305 GLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVT 364 ++AE +VN E GE+ + +DE L+++ ++ + I + + I N+ + Sbjct: 296 NKFLAEPVVNAE-GEVLFDTLTQLDELKLKKLHELKVNEFVIANDSAAGVDNSIINSFIA 354 Query: 365 DKNK------------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVG 412 D + A + IY+VMRPG+ T VA+S LFFDS++YDL+ VG Sbjct: 355 DAESLKMLRQSEKIDDENDLAAIRIYKVMRPGEPVTKEVAKSFVRQLFFDSERYDLTRVG 414 Query: 413 RVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLK 472 R+KMN +L ++ PD V + EDI+ I+ L+ ++NG G IDD D+LGNRR+RS+GE+L Sbjct: 415 RMKMNHKLQINVPDYVTVLTHEDILKTIQYLLKVKNGLGKIDDRDHLGNRRIRSIGELLA 474 Query: 473 NQYRLGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 N+ GL++M+++I+++++S+ D++MP DL+N K + S + EFF QLSQ + N Sbjct: 475 NELHSGLVKMQKAIRDKLTSLSGVFDTIMPHDLVNGKMITSTIMEFFTGGQLSQFMDQTN 534 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L+++ Sbjct: 535 PLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTYT 594 Query: 591 RVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA 650 RVN GFIE PY+KV +G VT+++VYL+A +EE IA A++++D+DG E+L+ R Sbjct: 595 RVNDLGFIEAPYKKVENGIVTDEIVYLTAAQEEGLVIAPASTAVDKDGRIIEDLIETRKD 654 Query: 651 GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF 710 GE +L + ++ ID SP+ +V +AASLIPFLE+DD+NR LMG NMQRQAVPLLK +AP Sbjct: 655 GEILLGEKSRVQLIDLSPRMLVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKPDAPI 714 Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRS 770 VGTG+E V+A+ S A AKR G+VE+VD+ I I + + + +D Y L K R+ Sbjct: 715 VGTGIEQVIARDSWEATKAKRGGVVEKVDSKNIYILGEDD----NGAYIDHYYLGKNLRT 770 Query: 771 NQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS 830 NQNTC +Q+P+V+ GD V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++S Sbjct: 771 NQNTCFSQQPIVRQGDSVEEGQIIADGPSMDSGELALGKNIRVAFMPWNGYNFEDAIVVS 830 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 E+++ ED FTSIHI E E+ AR+ K G EEIT DIP E ++DE GI+ +G V+ Sbjct: 831 EKLIEEDAFTSIHIYEKEIEARELKHGLEEITADIPGTKETETAHLDESGIVRIGTYVSG 890 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 G ILVGK++PKGE TPEE+LLRAIFGEKA V + SL P + GTVVDV+IF + G Sbjct: 891 GMILVGKVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKIFTKKGY 950 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS----GPKGFKKST 1006 +K+ R+IS E+ ++L + D ++ + R+ +L + +S K FKK T Sbjct: 951 EKDARAISAYEEEKKVLDIEHHDRLTMIQQEEILRISLMLSKEKLISEAKIADKTFKKGT 1010 Query: 1007 VLSSDLISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD 1065 + + +S ++VQ E +K + K L + + K+ ++ D Sbjct: 1011 QIPKEELSVLNPFALSTLIKSYSKEVQSRYEQIKTNFLEQKKTLGEEHEEKLSILEKDDI 1070 Query: 1066 MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPL 1125 +P GV+++VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPL Sbjct: 1071 LPSGVVKLVKIYIATKRKLKVGDKMAGRHGNKGIVSNIVPMVDMPYTADGEPVDIVLNPL 1130 Query: 1126 GVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI-----GTGS 1180 GVPSRMN+GQI E HLG LG++++ ++N + LRS + ++ + Sbjct: 1131 GVPSRMNIGQILEVHLGLVGKNLGRQLEEVLNSQSKQW-VEILRSKMIEIHKLVNPEDKA 1189 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGL 1240 + + DD+ ++ A W GV + PVF+G +E + + +A +D G++ LYDG Sbjct: 1190 MLDFLQKLDDERLIGYARDWSRGVKFAIPVFEGIKQEQFDKLFALAKIDTDGKTELYDGK 1249 Query: 1241 TGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVW 1300 TGE V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW Sbjct: 1250 TGEKMRERVNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVW 1309 Query: 1301 CIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLS 1360 ++AYGAA+ L+EMLTIKSDD GR Y++I G E+ PE+F VL KE+Q+L L Sbjct: 1310 ALEAYGAAHTLKEMLTIKSDDTEGRRGAYKAITKGERVGESEIPETFYVLTKELQSLALD 1369 Query: 1361 IDLENSRTKNSAK-----MEEIP---DFNKCEL 1385 +++ + ++E DF+ +L Sbjct: 1370 VNIYGEEVDENGMPVPITIKEDDRPKDFSSFQL 1402 >gi|78776554|ref|YP_392869.1| DNA-directed RNA polymerase subunit beta [Sulfurimonas denitrificans DSM 1251] gi|109914408|sp|Q30TP7|RPOB_SULDN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|78497094|gb|ABB43634.1| DNA-directed RNA polymerase, beta subunit [Sulfurimonas denitrificans DSM 1251] Length = 1381 Score = 1359 bits (3518), Expect = 0.0, Method: Composition-based stats. Identities = 602/1383 (43%), Positives = 901/1383 (65%), Gaps = 34/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+ I++P+L+++Q++SY+ FLM+ +R G++ F+SVFPI Sbjct: 10 RLRVDFSKTPQQIEVPNLLQLQQSSYNKFLMLE--EKDRSQSGVETVFQSVFPIHDTQNR 67 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 +E++ E PK+ V +C+ R LTYAV L++ RLI++D DE T K +KDIKEQSI Sbjct: 68 LTVEYIDSEVGKPKYTVRECMERGLTYAVSLRMKTRLILWDRDENTKEKLGVKDIKEQSI 127 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ D+PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 128 FVRDIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEES-TTSGNKLIYTGQIIPDRGS 186 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D KDI+++RI++RRKVPVT ALG ++IL FYP + + + + Sbjct: 187 WLYFEYDPKDILYMRINKRRKVPVTIMFRALGYSKQDILKLFYPIQHINIVDNKFLMSFN 246 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D ++++ LVD G+ ++ SGK+L++ ++ ++G+ + + L Y+A+ Sbjct: 247 PNDY--SSRLTYDLVD-KNGKILLASGKRLSAKKAQNFIDEGLSEVEYPLEVLLDRYLAK 303 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD----- 365 IV+ ETGEI +A IDE L+++ +++ I + + I N D Sbjct: 304 PIVDPETGEILFDAMTRIDETKLKKLSEIGVKNFSIANDLAEGVDGSIINAFNADADSLK 363 Query: 366 ---KNKDRKDAL----LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + +D +D + IY+VMRPG+ T A+ N LFFD ++YDL+ VGR+KMN Sbjct: 364 LLKQTEDIEDENHLSAIRIYKVMRPGEPVTKEAAKVFVNQLFFDPERYDLTKVGRMKMNH 423 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ P+ + + EDII +K ++ ++NG+G IDD D+LGNRR+RS+GE+L N+ G Sbjct: 424 KLGLNIPEYITVLTHEDIIESVKYVIKVKNGQGHIDDRDHLGNRRIRSIGELLGNELHNG 483 Query: 479 LLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++I++++S++ ++ +MP DLIN+K + S + EFF QLSQ + N LS +T Sbjct: 484 LIKMQKAIRDKLSTMSGPMNELMPHDLINSKMITSTIMEFFSGGQLSQFMDQTNPLSEVT 543 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L ++++VN +G Sbjct: 544 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLATYSKVNEHG 603 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PY+ + +GKVT+++VYL+A +EE + IA A++ LD+DG F +++V R GE + Sbjct: 604 FIEAPYKVMKEGKVTDEIVYLTATQEEGKKIAAASNKLDKDGQFIDKMVVTRVDGEILHR 663 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P + ++ D S VV +AASLIPFLE+DD+NR LMG NMQRQAVPL+K EAP VGTG+E Sbjct: 664 PVTECNYADLSSHMVVGVAASLIPFLEHDDANRALMGANMQRQAVPLIKHEAPIVGTGVE 723 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 +VA+ S + A+R+GIVE+VD I + + +D Y L K R+NQNT Sbjct: 724 KLVARDSWECVKARRSGIVEKVDGKHIYVMGDDD----GEIYIDYYPLQKNLRTNQNTAF 779 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q+P+V +G V +IADGP+ D G+LALG N +VAFMPW+GYNFED+++ISER++ + Sbjct: 780 GQKPIVNIGQRVEIGQVIADGPNMDQGELALGVNAMVAFMPWNGYNFEDAIVISERLIRK 839 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E EV AR+ K G EEITRDIPNV ++ L ++DE GII +G V G ILVG Sbjct: 840 DAFTSVHIYEKEVEARELKHGVEEITRDIPNVRDDELSHLDESGIIKIGTNVTGGMILVG 899 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL P + G VVDV+IF + G DK+ R+ Sbjct: 900 KVSPKGEVKPTPEERLLRAIFGEKAGHVINKSLYCPPSMEGVVVDVKIFTKKGYDKDART 959 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK----GFKKSTVLSSDL 1012 + +E+E+ + L R+ D +++D+ R+ ++L + ++ K +K +++ + Sbjct: 960 LELEKEERDYLEREHYDRLLMIDKEEMLRVTKLLTKEPLINDIKIGNTSYKAGDIINGED 1019 Query: 1013 ISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + E R E++Q K ++ K + D + K+ ++ D +P GV+ Sbjct: 1020 LVEVNRFAMNAIIKSFSEEIQSEYNKTKNYFQKEKRLFRDEHEEKLNILEKDDILPNGVV 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 + VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+++DG VD+ LNPLGVPSRM Sbjct: 1080 KHVKIYIATKRQLKVGDKMAGRHGNKGIVSTIVPEVDMPYMEDGRGVDVCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSH---TEKISDY 1188 N+GQI E HLG A LG +I + + K I LR+ + ++ + + D Sbjct: 1140 NIGQILEMHLGMAGRELGHQI-TKEFESKQKDFIKNLRAKMIEIADVAQMMNAAKTLGDM 1198 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L A W GV ++P+F+G + + +A +D G+++LY+GLTGE Sbjct: 1199 SDELLLHHARDWSRGVKFASPIFEGVNAVEFEKLFALAKMDTDGKTVLYNGLTGEKIKER 1258 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+Y+LKL+H+V +K++ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGA+ Sbjct: 1259 VNVGYMYILKLHHLVDEKIHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAS 1318 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 VL+EMLTIKSDDV GR R Y++I G E+G PE+ VL KE+Q+L L +++ + Sbjct: 1319 AVLKEMLTIKSDDVDGRVRAYKAITKGELVPESGIPETLFVLTKELQSLALDVEIFDEVE 1378 Query: 1369 KNS 1371 N Sbjct: 1379 DNE 1381 >gi|296274141|ref|YP_003656772.1| DNA-directed RNA polymerase subunit beta [Arcobacter nitrofigilis DSM 7299] gi|296098315|gb|ADG94265.1| DNA-directed RNA polymerase, beta subunit [Arcobacter nitrofigilis DSM 7299] Length = 1381 Score = 1356 bits (3509), Expect = 0.0, Method: Composition-based stats. Identities = 600/1383 (43%), Positives = 887/1383 (64%), Gaps = 34/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F KNP+ I+IP+L+++Q+ SYD+FLM + + R + G++ FKS+FPI G Sbjct: 10 RLRVDFAKNPQHIEIPNLLQLQQNSYDNFLM--VGKESRTDAGIEKVFKSIFPIHDAQGR 67 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSI 130 L+++ E PK+DV + + R LTY++PLKI +RL ++D++E TG K +KD+KEQS+ Sbjct: 68 ITLDYIESEVGKPKYDVRESMVRGLTYSIPLKIKIRLTLWDLNEKTGEKIGVKDMKEQSL 127 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ ++PLMT +F++ G++R+VV+QLHRSPG+ F ++ KL+Y +IIPD+G Sbjct: 128 FVREIPLMTDRTSFIVNGVERVVVNQLHRSPGVIFKEEESNT-AGNKLIYTGQIIPDRGS 186 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVPVT ALG E+I+ FYP + + + + S Sbjct: 187 WLYFEYDAKDVLYVRINKRRKVPVTILFRALGYSKEDIIKMFYPILNIKIKNNKFLTEFS 246 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D +V + D D G VI +GK+LT+ K+L + G+K + + L A Sbjct: 247 PEDF--TGRVEFDIKD-DKGNLVIAAGKRLTARKAKALVDGGLKLVEYPVELLMDRSTAG 303 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I + E+GE+ ++ +DE L+++ I + + I N D Sbjct: 304 TIFDPESGEVLFDSLTHLDELKLKKLLDLGFESFDIANDLAEGVDDSIINAFAADAESLK 363 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ T A+ LFFD ++YDL+ VGR+KMN Sbjct: 364 LLRQTEQLEDENDLAAIRIYKVMRPGEPVTKEAAKDFVKKLFFDPERYDLTKVGRMKMNH 423 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L ++ P+ V + ED+I ++ LV +++G G IDD D+LGNRR+R++GE+L N+ G Sbjct: 424 KLGVNVPEYVTTLTYEDVIKTVQYLVKVKSGHGHIDDRDHLGNRRIRAIGELLANEMHSG 483 Query: 479 LLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++I+++++++ ++ +MP DL+N+K + S + EFF S QLSQ + N LS +T Sbjct: 484 LIKMQKAIRDKMTTLSGTLEDIMPHDLVNSKMITSTITEFFTSGQLSQFMDQTNPLSEVT 543 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L++FA+VN G Sbjct: 544 HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTFAKVNELG 603 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PY+KV DG V+N+++Y++A +EE IA ++ +D++G E L+ R GE ++V Sbjct: 604 FIEAPYKKVNDGIVSNEIIYVTATQEEGLLIAPGSTKVDDNGKIVEPLIEARQDGEILIV 663 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 R K++ ID S + V+ +AASLIPFLE+DD+NR LMG NM RQAVPLL+ AP VGTG+E Sbjct: 664 ERGKVNLIDISSQMVMGVAASLIPFLEHDDANRALMGSNMMRQAVPLLRPNAPIVGTGLE 723 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 VA+ + AI A R GIVE+ DA I +R + + + +D Y + K R+N NT Sbjct: 724 KTVARDAWEAIKADRTGIVEKADAKNIYVRGEDE----NGAFIDHYSVNKNVRTNNNTSF 779 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 QR VK GD V + +IADGPS D G+LA+G N VAFMPW+GYN+ED++++S+R++ E Sbjct: 780 GQRIAVKEGDIVEKGQVIADGPSMDKGELAVGVNACVAFMPWNGYNYEDAIVLSQRLIKE 839 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTSIHI E +V R+ K G EEITRD+P V +E + ++DE GI+ VG + PG I+VG Sbjct: 840 DAFTSIHIYEKDVECRELKHGNEEITRDLPGVKDESITHLDESGIVKVGTFIKPGMIMVG 899 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K+TPKGE TPEE+LLRAIFGEKA V + SL P+ + GTVVDV++F + G +K+ R+ Sbjct: 900 KVTPKGEIKPTPEERLLRAIFGEKAGHVINKSLYCPTSMEGTVVDVKVFTKKGYEKDSRA 959 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK----GFKKSTVLSSDL 1012 ++ + L D+ ++LDR ++ ++L +KK V+ D+ Sbjct: 960 VAEIESEKAELDLKHHDKLLMLDREEILKINDLLSKALLAKDVDLDDVVYKKGQVIPLDV 1019 Query: 1013 ISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 +S R + D+ V++ +K + KS L + K+E ++ D + GV+ Sbjct: 1020 LSSVNRFAMKKVVSSYDKDVEKKYNDIKEYFINQKSRLRTDHEEKLEVLEHDDILQSGVI 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 + VKV+VA KR I+ GDKMAGRHGNKGIVS I+P DMP+L+DG+ VD++LNPLGVPSRM Sbjct: 1080 KQVKVYVATKRKIKVGDKMAGRHGNKGIVSNIVPQVDMPYLEDGSTVDVILNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSH---TEKISDY 1188 N+GQI E HLG LG +I+ + D K +S LR+ + ++ E ++ Sbjct: 1140 NIGQILEVHLGLVGKRLGTQIQDI-FDAKKTEFVSELRAKMTEIADVAKLMNGKEFLAKL 1198 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 DD ++ A+ W GV +T VFDG E+ + +A +D G++ L DG TG+ Sbjct: 1199 SDDELVDYAQDWTKGVRFATQVFDGVKEDEFLKLFELAKIDLDGKTNLIDGKTGDKMKER 1258 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGA Sbjct: 1259 VNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAT 1318 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 VL+EMLT KSDDV GRTR Y +I G + ++G PE+F VL KE++ALGL +++ + Sbjct: 1319 AVLKEMLTTKSDDVEGRTRAYRAISNGENVPDSGVPETFFVLTKELKALGLDVEIFDEVE 1378 Query: 1369 KNS 1371 N Sbjct: 1379 NNE 1381 >gi|157738103|ref|YP_001490787.1| DNA-directed RNA polymerase subunit beta [Arcobacter butzleri RM4018] gi|315636455|ref|ZP_07891697.1| DNA-directed RNA polymerase subunit beta [Arcobacter butzleri JV22] gi|182676551|sp|A8EVZ4|RPOB_ARCB4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157699957|gb|ABV68117.1| DNA-directed RNA polymerase, beta chain [Arcobacter butzleri RM4018] gi|315479236|gb|EFU69927.1| DNA-directed RNA polymerase subunit beta [Arcobacter butzleri JV22] Length = 1382 Score = 1355 bits (3508), Expect = 0.0, Method: Composition-based stats. Identities = 599/1384 (43%), Positives = 889/1384 (64%), Gaps = 34/1384 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F KNP+ I+IP+L+++Q+ SYD FLM+ ++R G++ FKS+FPI Sbjct: 10 RLRVDFAKNPQKIEIPNLLQLQQTSYDTFLMIG--QEDRTTAGIEKVFKSIFPIHDVQNR 67 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSI 130 L+++ E PK+DV + + R LTY++PLKI +RL ++D+DE TG K +KD+KEQS+ Sbjct: 68 LTLDYLGSEVGKPKYDVRESMVRGLTYSIPLKINIRLTLWDLDEKTGEKIGVKDMKEQSL 127 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ ++PLMT +F++ G++R+VV+QLHRSPG+ F ++ KL+Y +IIPD+G Sbjct: 128 FIREIPLMTDRTSFIVNGVERVVVNQLHRSPGVIFKEEESNT-ADNKLIYTGQIIPDRGS 186 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+DSKD+++VRI++RRKVPVT ALG E+I+ FYP + + + + + Sbjct: 187 WLYFEYDSKDVLYVRINKRRKVPVTILFRALGYSKEDIIKLFYPIVNIKIKNNKFLTEFN 246 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D M ++ + D D G VI +GK+LT+ K+L E G+K + + L A Sbjct: 247 PDDFM--GRIEFDVKD-DKGNLVIGAGKRLTARKAKALIEGGLKLIEYPLELLMDRSTAN 303 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I + E+GE+ +A +DE L+++ I +V +A I N D Sbjct: 304 TIYDPESGEVLFDALTNLDELKLKKLLDLGFESFDIANDLAVGIDASIINAFKADAESLK 363 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ T A+ LFFD ++YDL+ VGR+KMN Sbjct: 364 LLKQTEQIDDENDLAAIRIYKVMRPGEPVTKEAAKDFVKKLFFDPERYDLTKVGRMKMNH 423 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L ++ P+ V + ED+I ++ LV +++G G IDD D+LGNRR+R++GE+L N+ G Sbjct: 424 KLGVNVPEYVTTLTYEDVIKTVQYLVKVKSGHGHIDDRDHLGNRRIRAIGELLANELHAG 483 Query: 479 LLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++I+++++++ ++ +MP DL+N+K + S + EFF S QLSQ + N LS +T Sbjct: 484 LIKMQKAIRDKMTTLSGTLEDLMPHDLVNSKMITSTITEFFTSGQLSQFMDQTNPLSEVT 543 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L++F++VN G Sbjct: 544 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLSTFSKVNDLG 603 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PY+KV DG VTN++ Y +A +EE IA ++ +DE+G E L+ R GE +L+ Sbjct: 604 FIEAPYKKVVDGVVTNEISYYTATQEEGLVIAPGSTKVDENGKIIEPLIEVRKNGEILLM 663 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 R +D ID S + V+ +AASLIPFLE+DD+NR LMG NM RQAVPLL+ AP VGTG+E Sbjct: 664 ERNSVDLIDISSQMVMGVAASLIPFLEHDDANRALMGSNMMRQAVPLLRPSAPVVGTGLE 723 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 +VA+ + AI A RAG+VE+ DA I IR + + + +D Y + K R+N NT Sbjct: 724 KIVARDAWEAIKANRAGLVEKADAKNIYIRGEDE----NGAFIDHYTVNKNVRTNNNTSF 779 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 QR VK GD V++ +IADGPS D G+LA+G N +VAFMPW+GYN+ED++++SER++ E Sbjct: 780 GQRIAVKEGDFVQKGQVIADGPSMDKGELAVGINAMVAFMPWNGYNYEDAIILSERLIEE 839 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ R+ K G EEITRD+P V EE + ++D GI+ VG V PG ILVG Sbjct: 840 DAFTSVHIYEKEIECRELKHGNEEITRDLPGVKEESISHLDNSGIVKVGTYVTPGMILVG 899 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K+TPKGE TPEE+LLRAIFGEKA V + SL P+ + GTVVDV++F + G +K++R+ Sbjct: 900 KVTPKGEIKPTPEERLLRAIFGEKAGHVINKSLVCPTSMEGTVVDVKVFTKKGYEKDDRA 959 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK----GFKKSTVLSSDL 1012 ++ + L D+ ++LDR ++ ++L + +KK + D+ Sbjct: 960 VAEIESEKAELDLKHHDKLLMLDREEILKINDLLLKATLTKDVELDDVVYKKGETIPVDV 1019 Query: 1013 ISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 ++ R + +++++ +K + K+ L + + K++ ++ D + GV+ Sbjct: 1020 LNNVNRFAMKKVVSSYSKEIEKAYNDIKEYFIKQKAHLREEHEEKLQILEHDDILSSGVI 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 + VKV++A KR I+ GDKMAGRHGNKGIVS I+P DMP+L+DGT VD++LNPLGVPSRM Sbjct: 1080 KQVKVYIATKRKIKVGDKMAGRHGNKGIVSNIVPKVDMPYLEDGTTVDVILNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSH---TEKISDY 1188 N+GQI E HLG A LG +I+ + + K I+ LR+ + ++ + Sbjct: 1140 NIGQILEVHLGLAGKKLGNQIQDI-FEAKRADFIAELRAKMTEIASVAKLMNGKAFMDSL 1198 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 +D+ +++ A+ W GV +T +FDG E + +A +D G+ +L+DG TGE Sbjct: 1199 NDEELVQYAQDWAKGVRFATQIFDGVKAEEFAKLFELAKIDSDGKCVLFDGKTGEKMKER 1258 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGA Sbjct: 1259 VNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAT 1318 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 VL+EMLT KSDDV GRT+ Y +I G + +G PE+F VL KE++AL L +++ Sbjct: 1319 NVLKEMLTTKSDDVEGRTKAYRAIANGENVPNSGVPETFFVLTKELKALALDVEIFGEVE 1378 Query: 1369 KNSA 1372 N Sbjct: 1379 NNEQ 1382 >gi|118475419|ref|YP_892468.1| DNA-directed RNA polymerase subunit beta [Campylobacter fetus subsp. fetus 82-40] gi|158512509|sp|A0RQI5|RPOB_CAMFF RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|118414645|gb|ABK83065.1| DNA-directed RNA polymerase, beta subunit [Campylobacter fetus subsp. fetus 82-40] Length = 1379 Score = 1355 bits (3508), Expect = 0.0, Method: Composition-based stats. Identities = 604/1383 (43%), Positives = 884/1383 (63%), Gaps = 36/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F + ID+P+L+++QK S+DHFL ++ + + G++ FKS+FPI Sbjct: 10 RLRVDFSNVAKEIDVPNLLQLQKKSFDHFLNLD---NSQTESGIEKVFKSIFPIHDPQNR 66 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+VS E P++ V +C+ R LTY V LKI +RLIV D DE T K +KDIKEQ I Sbjct: 67 LTLEYVSSEISKPRYTVRECMERGLTYCVNLKIKIRLIVHDRDEKTSEKVGVKDIKEQEI 126 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ ++PLMT +F+I G++R+VV+QLHRSPG+ F ++ ++ KL+Y +IIPD+G Sbjct: 127 FVREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEESPTVVN-KLIYTAQIIPDRGS 185 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD+++VRI++RRKVP+T ALG ++I+ FYP + + + + + Sbjct: 186 WLYFEYDTKDVLYVRINKRRKVPITILFRALGYKKQDIVKLFYPIQTLNIKNNKFLTMFN 245 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D +V + D D G + ++GK+LT L E G+KF+ + L Y+A Sbjct: 246 PDDF--SGRVDYDIKDED-GNILHQAGKRLTKKKADKLIEDGLKFVEYPIEVLVNRYLAS 302 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 +++ E+GE+ + +DE L +I +E I I + + I N+ + D Sbjct: 303 PVIDKESGEVIYDTLTQLDENKLAKIV-AEQNSIEIANDLASGVDDAIINSFLQDYETLK 361 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A + N LFF+ ++YDL+ VGR+KMN Sbjct: 362 LLKQTEGLEDENDLAAIRIYKVMRPGEPVVKEAARTFVNDLFFNPERYDLTKVGRMKMNH 421 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L P+ V + EDII K L+ ++NG+G IDD D+LGNRR+RS+GE+L N+ LG Sbjct: 422 KLGLSVPEYVTVLTNEDIIKTAKYLIKVKNGQGYIDDRDHLGNRRIRSIGELLANELHLG 481 Query: 479 LLRMERSIKERISS--VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 ++M+++I+++ +S ++D +MP DL+N K + + + EFF QLSQ + N LS +T Sbjct: 482 FVKMQKAIRDKFTSLSNNVDELMPYDLVNPKMITTTIMEFFTGGQLSQFMDQTNPLSEVT 541 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L+++A+VN G Sbjct: 542 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLSTYAKVNDLG 601 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E+PYR+V DGKVTN++VYL+A +EE IA A++ LD + E+L+ R GE +L Sbjct: 602 FVESPYRRVIDGKVTNEIVYLTATQEEGHIIAPASTVLDANDIIKEDLIEVRRDGEMLLA 661 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE + ID V+ +AASLIPFLE+DD+NR LMG NMQRQAVPLL++ AP VGTGME Sbjct: 662 KREDVTLIDLCSGMVMGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRSTAPIVGTGME 721 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++VA+ + AI AKR G++E+VD I I + + +D Y + K R+NQNT Sbjct: 722 AIVARDAWEAIKAKRGGVIEKVDNRNIFILGEDE----NGPYIDQYTMEKNLRTNQNTTF 777 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 +Q P+VK GD V+ IIADG S + G+LA+G+N L+AFMPW+GYN+ED++++SERM+ Sbjct: 778 SQHPIVKKGDMVKSGQIIADGSSMEKGELAIGKNALIAFMPWNGYNYEDAIVMSERMIRA 837 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEITRDIPN+ EE L ++DE GI+ +G + PG ILVG Sbjct: 838 DAFTSVHIYEKEIEARELKDGVEEITRDIPNMKEEDLMHLDESGIVKIGTHIKPGMILVG 897 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + + G V+DV+IF + G +K+ RS Sbjct: 898 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYAGASLEGVVIDVKIFTKKGYEKDARS 957 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS----GPKGFKKSTVLSSDL 1012 ++ +L ++ D ++LDR R+ +L S G +KK + Sbjct: 958 FKAYEDEKNILEKEHHDRLLMLDREEMLRVTALLSKNPLESELEIGKNSYKKGDKIKRSD 1017 Query: 1013 ISEYPRSQWWQF-AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + R + +++Q+ E +K ++ K L+D K+E ++ D +P GV+ Sbjct: 1018 LDNVNRFTLNTYVKCFSKEIQKTYEDMKAYFQNEKKKLKDEHDAKLEILEKDDILPSGVV 1077 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDIVLNPLGVPSRM Sbjct: 1078 KLVKVYLATKRKLKVGDKMAGRHGNKGIVSNIVPDVDMPYLPNGRTVDIVLNPLGVPSRM 1137 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG + LG++I+ + + K I LR+ + ++ +S Sbjct: 1138 NIGQILESHLGLVGMKLGEQIEEI-FENKKAEWIKELRAKMTEIADVSRLMDAKAILSKI 1196 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 DDD ++ A W SGV +TP+F+G + + MA +D G++ LYDG TG Sbjct: 1197 DDDKLIDYARDWASGVRFATPIFEGVKADEFKKLFEMAKIDMDGKTELYDGRTGSKMAER 1256 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1257 VNVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALSGGQRFGEMEVWALEAYGAA 1316 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLT+KSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1317 HTLREMLTVKSDDVEGRLAAYKALTRGENVPSTGIPETFFVLTNELKSLALDVEIYDEEE 1376 Query: 1369 KNS 1371 N Sbjct: 1377 NNE 1379 >gi|319957693|ref|YP_004168956.1| DNA-directed RNA polymerase subunit beta [Nitratifractor salsuginis DSM 16511] gi|319420097|gb|ADV47207.1| DNA-directed RNA polymerase subunit beta [Nitratifractor salsuginis DSM 16511] Length = 1385 Score = 1354 bits (3505), Expect = 0.0, Method: Composition-based stats. Identities = 599/1372 (43%), Positives = 883/1372 (64%), Gaps = 32/1372 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P I+IP L+++Q+ SY++FLMM+ +R N ++ F+S FPI Sbjct: 10 RLRVDFSKTPRQIEIPHLLQLQQNSYENFLMMD--AKDRSNSIIEKVFRSSFPIHDQQNR 67 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 L + E PK+ + +C+ R LTY+V LK+ + L +++ DE TG + K+IKEQ+I Sbjct: 68 ITLSYKGSEIIKPKYTIRECMERGLTYSVSLKLKIALTIWNRDERTGERLDPKEIKEQAI 127 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+ D+PLMT +F++ G++R++V+QLHRSPG+ F + + KL+Y+ +IIPD+G Sbjct: 128 YVRDIPLMTDRTSFIVNGVERVIVNQLHRSPGVIFKEAEAATVAN-KLIYSAQIIPDRGS 186 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KDI++ RI++RRK+PVT AL E+I+ FYP R + Sbjct: 187 WLYFEYDAKDILYARINKRRKIPVTILFRALDYTKEDIIKLFYPTKEIHIRDGRFIVRFD 246 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 AD + + + D+D G ++ GK+LT + L ++G++++ + L ++AE Sbjct: 247 PADFV--GRAEYDIRDVD-GNVIVNMGKRLTKKKAQKLADEGLEWVEYPVEILMDRHLAE 303 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN--- 367 I++ E+GE+ + +DE + +I I I + ++ I + + D+ Sbjct: 304 PIIDQESGEVIYDVITQLDENKIRKIVEMGIESFKIADDLAEGTDSSIIRSFIADQESLK 363 Query: 368 --KDRKDAL-------LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 K ++ + IY+VMRPG+ T A++ LFFD ++YDL+ VGR+KMN Sbjct: 364 LLKQTEEIDDENLLSAIRIYKVMRPGEPVTPEAAKAFLRQLFFDPERYDLTKVGRMKMNH 423 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L D P+ V + EDII +K L+ ++NG+G IDD D+LGNRR+R++GE+L N+ G Sbjct: 424 KLGQDVPEYVTVLTSEDIINTVKYLIKVKNGEGQIDDRDHLGNRRIRAIGELLGNELHNG 483 Query: 479 LLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++IK+++++V +D +MP DL+N+K + + + EFF QLSQ + N LS +T Sbjct: 484 LMKMQKAIKDKMTTVSGSLDDLMPHDLVNSKMITNTILEFFSGGQLSQFMDQTNPLSEVT 543 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L ++A+VN G Sbjct: 544 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLATYAKVNDLG 603 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PY+ V D KVT+++VY++A +EEN+ IA A++ +DE+G E+L+ R G L Sbjct: 604 FIEAPYKVVKDRKVTDEIVYITATQEENKVIAPASTKVDENGYIVEDLIETRLNGNIGLN 663 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 EK++ ID +P V A+LIPFLE+DD+NR LMG NMQRQAVPLLK EAP VGTGME Sbjct: 664 EAEKVNLIDVAPLMVSGATAALIPFLEHDDANRALMGSNMQRQAVPLLKPEAPMVGTGME 723 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++VA+ + AI AKR G+VE+VDA I ++ + + +D Y L K R+NQNT Sbjct: 724 AIVARDAWEAIKAKRTGVVEKVDARNIYVKGEDE----NGLFIDHYVLEKNMRTNQNTSF 779 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+V VG EV++ +IADGP+ D G+LA+G+N+LVAFMPW+GYN+ED++++SE+++ E Sbjct: 780 GQVPIVHVGQEVKKGQVIADGPNMDQGELAIGKNILVAFMPWNGYNYEDAIILSEKLIRE 839 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEITRDIPN+ EE L ++DE GI+ +G V PG ILVG Sbjct: 840 DTFTSVHIYEKEIEARELKHGTEEITRDIPNIREEDLMHLDESGIVKIGTHVKPGMILVG 899 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFG+KA V + SL P+ + G VVD++IF + G +K+ R+ Sbjct: 900 KVSPKGEIKPTPEERLLRAIFGDKAGHVVNKSLYCPASMEGVVVDIKIFTKKGYEKDARA 959 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEIL----CGQNAVSGPKGFKKSTVLSSDL 1012 I E+ L RD D+ +++DR ++ L Q+ G K +K + + Sbjct: 960 IRAYEEERARLDRDHHDKLLMIDREEILQITSFLAKQPLAQDVTVGEKTYKAGEKIPEEE 1019 Query: 1013 ISEYPRSQWWQFAVQD-EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 I+ R E+VQ+ E++K + K L+ + K++ ++ D +P GV Sbjct: 1020 IASINRFALRNVVASYPEEVQKEYEAMKNSFLKQKKRLKTEHEEKLQILEKDDILPSGVT 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR I+ GDKMAGRHGNKGIVS I+P DMP+++DGTPVD++LNPLGVPSRM Sbjct: 1080 KLVKVYIATKRKIKVGDKMAGRHGNKGIVSNIVPEIDMPYMEDGTPVDLILNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKAN--GDISPLRSFLEKVIGTGSHTEKISDYD 1189 N+GQI E HLG LG +I+ + +A+ ++ + ++ Sbjct: 1140 NIGQILEVHLGLIGKKLGAQIQEIYESKRADFVKELRAKMKEIADTAKLMKAKNELETMS 1199 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 D+ +L A W GV + P F+ +EE + +A +D G+++LYDG TGE V Sbjct: 1200 DEELLEYARDWAKGVKFAAPAFESPNEEEFAKLFELAKIDSDGKTVLYDGKTGERMLERV 1259 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA+ Sbjct: 1260 NVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAH 1319 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361 L+EMLTIKSDDV GR R Y +I G E+G PE+ VL KE+QALGL + Sbjct: 1320 TLKEMLTIKSDDVEGRARAYRAITRGESVPESGIPETMFVLTKELQALGLDV 1371 >gi|257460967|ref|ZP_05626067.1| DNA-directed RNA polymerase, beta subunit [Campylobacter gracilis RM3268] gi|257441630|gb|EEV16773.1| DNA-directed RNA polymerase, beta subunit [Campylobacter gracilis RM3268] Length = 1397 Score = 1353 bits (3503), Expect = 0.0, Method: Composition-based stats. Identities = 604/1382 (43%), Positives = 883/1382 (63%), Gaps = 36/1382 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+ I+IP+L+++QK S+DHFL ++ + G++ FK++FPI Sbjct: 29 RLRVDFSKVPKDIEIPNLLQLQKKSFDHFLNLD---NSGGESGIEKVFKAIFPIHDAQNR 85 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSI 130 +E+VS E PK+ + +C+ R LTY+V LK+ LRL+V + DE TG K +K+IKEQ I Sbjct: 86 LSIEYVSSEISKPKYSIRECMERGLTYSVNLKMKLRLLVHERDEKTGKKIGVKEIKEQDI 145 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ D+PLMT +F+I G++R+VV+QLHRSPG+ F ++ L+ KL+Y +IIPD+G Sbjct: 146 FIRDIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEESPTVLN-KLIYTAQIIPDRGS 204 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D KD+++VRI++RRKVP+T ALG ++I+ FYP + + Sbjct: 205 WLYFEYDVKDVLYVRINKRRKVPITILFRALGYKKQDIIKLFYPIKTIYIKKGKFLTDFD 264 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 + ++ ++ + GE + ++ K+LT + L E G+K + ++ L Y+A+ Sbjct: 265 PKEYA--GRLDYDIIS-EKGEVLHQASKRLTVKKAEKLAEDGLKLIEYPAEILAERYLAD 321 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 IV+ +GE+ ++ +DE L +I ++E + I + + I N+ + D + Sbjct: 322 AIVDKNSGEVLFDSLTALDEGKLAKIANTE-KKFTIANDLASGVDTSIINSFIQDADALK 380 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ A+S N LFF+ ++YDL+ VGR+KMN Sbjct: 381 LLQQSEGIDDENDLAAIRIYKVMRPGEPVVKEAAKSFVNDLFFNPERYDLTKVGRMKMNH 440 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L ++ P+ V + EDII K L+ ++NG G IDD DNLGNRR+RS+GE+L N+ LG Sbjct: 441 KLGIEAPEYVTVLSSEDIIKTAKYLIRVKNGDGFIDDRDNLGNRRIRSIGELLANEMHLG 500 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 ++++++IK++ + S ++D +MP D +N K + + + EFF QLSQ + N LS +T Sbjct: 501 FIKVQKAIKDKFTGISGNLDELMPYDFVNPKIITTTLMEFFTGGQLSQFMDQTNPLSEVT 560 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L ++A+VN G Sbjct: 561 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLATYAKVNDLG 620 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PY+KV +GKVT+++VYL+A +EE IA A++ LDE+G+ EEL+ R GE I+ Sbjct: 621 FVEAPYKKVVNGKVTDEIVYLTATQEEGLVIAPASAKLDEEGNIVEELLEVRKDGENIMA 680 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE I ID V +AASLIPFLE+DD+NR LMG NMQRQAVPLL + AP VGTGME Sbjct: 681 KREDISLIDLCSGMVAGVAASLIPFLEHDDANRALMGSNMQRQAVPLLHSTAPIVGTGME 740 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 +++A+ S AI A R G+VE+VD I I + +D Y + K R+NQNT Sbjct: 741 AIIARDSWEAIKANRDGVVEKVDNKNIFILGEDEK----GPFIDHYSMEKNLRTNQNTTF 796 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 +QRP+V+ GD ++ IIADGPS D G+LA+G+N L+AFMPWHGYN+ED++++SE+M+ Sbjct: 797 SQRPIVRKGDVIKAGQIIADGPSMDGGELAIGKNALIAFMPWHGYNYEDAVVMSEKMIRA 856 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D +TS+H+ E E+ AR+ K G EEITRDIPN+ EE L ++D+ GI+ +G V PG ILVG Sbjct: 857 DEYTSVHVYEKEIEARELKDGVEEITRDIPNIKEEELTHLDDSGIVKIGTHVKPGMILVG 916 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K+TPKGE TPEE+LLRAIFGEKA V + SL + + G V+DV+IF + G +K+ R+ Sbjct: 917 KVTPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASMEGVVIDVKIFTKKGYEKDPRT 976 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS----GPKGFKKSTVLSSDL 1012 ++ L R+ D ++LDR +++ +L S K +KK + + Sbjct: 977 NKAYEDEKTELEREHHDRLLMLDREEMLKVVALLSKSALQSDQSLNKKDYKKGDKVKKEE 1036 Query: 1013 ISEYPRSQWWQFAVQDEK-VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + R F K VQ+ E LK ++ K L++ KIE ++ D +P GV+ Sbjct: 1037 LESSNRFTLNSFVKAYSKAVQKEYEELKNHFQNEKRKLKEEHDEKIEILEKDDILPSGVV 1096 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L G VDIVLNPLGVPSRM Sbjct: 1097 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYLPSGQRVDIVLNPLGVPSRM 1156 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E+HLG LG++I ++ + K I LR+ + ++ G + + Sbjct: 1157 NIGQIMESHLGLVGWRLGEQIAKIL-EEKTGEWIKTLRAKMIEIAGVSKLMQAKKTLEKI 1215 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L+ A W GV S P+F+G E + MA +D+ G++ LYDG TGE Sbjct: 1216 SDEDLLKYARDWAKGVRFSAPIFEGIVPEDFKKLFEMAGIDQDGKTELYDGRTGEKIKER 1275 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VG +Y LKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1276 VNVGCMYYLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1335 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 Y L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ + Sbjct: 1336 YTLREMLTIKSDDVDGRLAAYKALTKGENVPSTGIPETFFVLTNELKSLALDVEIYENGE 1395 Query: 1369 KN 1370 Sbjct: 1396 NK 1397 >gi|77921157|gb|ABB05344.1| RpoB [Micavibrio sp. EPB] Length = 1193 Score = 1353 bits (3501), Expect = 0.0, Method: Composition-based stats. Identities = 698/1195 (58%), Positives = 899/1195 (75%), Gaps = 34/1195 (2%) Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 D+PLMTK+GTF++ G +R++VSQ+HRSPG+ FDHD G+ SGK L+A R+IP +G W+D Sbjct: 1 DMPLMTKNGTFIVNGTERVIVSQMHRSPGVFFDHDGGKTHASGKYLFAARVIPYRGSWLD 60 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMAL-------------------------GMDSEEI 228 EFD+KD+++VRIDRRRK+PVT+ L AL GM +EEI Sbjct: 61 FEFDAKDLMYVRIDRRRKLPVTTLLRALDSSMTADYRAKCEENDQPVDPLMVQGMSNEEI 120 Query: 229 LSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSL 288 L TFY + YS+ W A M G K+ L+D TG+ V+++G K+T+ ++K L Sbjct: 121 LRTFYGVVTYSKEKKGWKTAFDGA-RMRGVKLDHDLIDAKTGKSVLDAGTKITARVIKQL 179 Query: 289 KEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILY 348 +EKG+K + + L G Y+AEDI + +TG++ EAG I E+ L+ S + DIP+L Sbjct: 180 EEKGLKDMLVEDAQLIGQYLAEDIFDAKTGQVIFEAGHEITEEELKAFDKSGVTDIPVLA 239 Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D VN Y+RNTL+ DK R++AL+DIYRVMRPG+ T A+++F+ LFFD+++YDL Sbjct: 240 IDHVNVGPYVRNTLLADKCDTREEALIDIYRVMRPGEPPTVESAQALFDSLFFDAERYDL 299 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 S VGRVKMN+RLNLD D VR +RK+DI+AI+K L L++G G IDDIDNLGNRRVRSVG Sbjct: 300 SAVGRVKMNLRLNLDAEDTVRVLRKDDILAILKYLHGLKDGAGEIDDIDNLGNRRVRSVG 359 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 E+++NQ R+GLLRMER+I+ER+SSVDID+ MP DLIN KPV +V EFF SSQLSQ + Sbjct: 360 ELMENQVRVGLLRMERAIRERMSSVDIDNYMPHDLINPKPVAVSVREFFGSSQLSQFMDQ 419 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 N LS ITH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL + Sbjct: 420 TNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLAT 479 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 FARVN YGFIE+PYR+V DGKVT++VVY+SAMEE IAQA++ L +DG F ++LV CR Sbjct: 480 FARVNQYGFIESPYRRVVDGKVTDEVVYMSAMEEAKYTIAQASTPLSKDGKFLDDLVSCR 539 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 AGE ++ + I+ ID SPKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPLL+++A Sbjct: 540 QAGENLMATPDTINMIDVSPKQIVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRSDA 599 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME+ VA+ SGAA+ A+R+GIV QVDA R+VIR+ E VDIY+L KFQ Sbjct: 600 PLVGTGMEAAVARDSGAAVTARRSGIVVQVDATRVVIRATEMTRAD-EPTVDIYKLSKFQ 658 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQ+TC+ Q+PLVKVGD+++ DIIADGPST G+LALGRN+LVAFMPW+GYNFEDS+L Sbjct: 659 RSNQSTCITQKPLVKVGDQIKAGDIIADGPSTQFGELALGRNVLVAFMPWNGYNFEDSIL 718 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V+ED+FTSIHIEEFEVMARDTKLG EEITRDIPNV EE LK++DE GI+ +GAEV Sbjct: 719 LSERIVAEDIFTSIHIEEFEVMARDTKLGTEEITRDIPNVGEEALKHLDEAGIVHIGAEV 778 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGESPMTPEEKLLRAIFGEKA DV+DTSLRVP GV+GT+V+VR+FNR Sbjct: 779 QAGDILVGKVTPKGESPMTPEEKLLRAIFGEKAADVKDTSLRVPPGVTGTIVEVRVFNRR 838 Query: 949 GIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK--GFKKST 1006 G+DK+ R++S+ER +IE LA+D+DDE+ IL+ Y+RL E+L GQ + PK K + Sbjct: 839 GVDKDARALSIERAEIEQLAKDRDDERSILEGGFYARLAEMLVGQTLAAAPKQLDLAKGS 898 Query: 1007 VLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDM 1066 + + R W Q V++E +E++ ++ + L+ RF++K+EK+Q GD++ Sbjct: 899 KIKQSDLDSISRGLWRQIGVENETRMEEIEAMSKTFDDAVDDLKARFESKVEKLQRGDEL 958 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 PPGV+++VKVF+A+KR +Q GDKMAGRHGNKG+VSRI+P EDMP+ +DG PVDIVLNPLG Sbjct: 959 PPGVMKMVKVFIAVKRKMQPGDKMAGRHGNKGVVSRIVPAEDMPYTEDGQPVDIVLNPLG 1018 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKA-----NGDISPLRSFLEKVIGTGSH 1181 VPSRMNVGQI ETHLGWA LGK+I LI+ + +GD+ L+ L+ V G + Sbjct: 1019 VPSRMNVGQILETHLGWASANLGKQIGQLIDSFADRKAPSDGDVKKLKEHLKGVYGDKEY 1078 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLT 1241 EK++ D ++ +A + GVP++TPVFDGA E I+++L A L+ SGQ L DG T Sbjct: 1079 EEKVTKLSDQHLVEMANNLRGGVPMATPVFDGAVEADIDTLLAKAGLNTSGQVRLIDGRT 1138 Query: 1242 GEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 GE F R VTVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GE Sbjct: 1139 GEYFHRNVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGE 1193 >gi|261838520|gb|ACX98286.1| DNA-dependent RNA polymerase beta-beta prime subunit [Helicobacter pylori 51] Length = 2890 Score = 1351 bits (3497), Expect = 0.0, Method: Composition-based stats. Identities = 606/1409 (43%), Positives = 892/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+V EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ +KDIKEQ Sbjct: 64 NRITLEYVGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGVKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ +S Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQISK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|41017781|sp|Q93MK9|RPOB_EHRSE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|15081474|gb|AAK83924.1|AF401088_1 RNA polymerase beta-subunit [Neorickettsia sennetsu] Length = 1357 Score = 1351 bits (3496), Expect = 0.0, Method: Composition-based stats. Identities = 638/1357 (47%), Positives = 902/1357 (66%), Gaps = 32/1357 (2%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 D PDL++VQK SY F+ + F SVFP+ G A LEFVS Sbjct: 14 FDFPDLVKVQKDSYASFVGGGDTGFSISD-----IFASVFPVNDGYGRASLEFVSCRMGE 68 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-------IKDIKEQSIYMGDLP 136 PK D C+ R +TY+ PL+ LRL+VF + +KD++EQ IYMGD+P Sbjct: 69 PKHDEYGCVERGITYSAPLRAILRLVVFGDETSGEGSEGVSTEPAVKDVREQEIYMGDIP 128 Query: 137 LMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEF 196 +M+K+GTF+I G++R+VVSQ+HR+PG+ FD+DK R+ +SGKL Y RIIP +G W+D EF Sbjct: 129 IMSKNGTFIINGVERVVVSQMHRAPGVFFDNDKARS-ISGKLNYIARIIPYRGSWLDFEF 187 Query: 197 DSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMV 256 D+KD+++ RID++RK+PVT L ALG+ +++I + F D + Sbjct: 188 DAKDVLYFRIDKKRKLPVTFLLRALGLSNKDIFAQFCEVSECRLTKDGKWTVCFVPEKFK 247 Query: 257 GAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGE 316 G ++ L++ +TGE V+ G +++ L ++L KG+++ + + + +Y+A+D+V+ + Sbjct: 248 GVRLQYDLINAETGELVLAKGNRISIVLARNLYAKGLRYCYMDLEVMKDMYLADDLVSTK 307 Query: 317 TGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLD 376 GE+ + G + ++ + ++ ++ I ++ + + V + ++A+L Sbjct: 308 -GEVLLPHGTKLTKEHVAKLEFLDVDSIKLVELKGNYVFS-----TVLQYDCSYEEAMLS 361 Query: 377 IYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDI 436 IYRV+RPG++ + AE +F LFF ++YDL VGR+++N + NL + + + KEDI Sbjct: 362 IYRVVRPGEIPSVESAEKLFESLFFSPERYDLLNVGRIRLNAKFNLSHDESLTVLTKEDI 421 Query: 437 IAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDID 496 +K L L+ G +DDID+LGNRRVRSVGE + NQ+R+GL+RM + I E +++ D D Sbjct: 422 FCTVKELALLQREVGDVDDIDHLGNRRVRSVGEFMDNQFRIGLVRMAKVIVENMATADFD 481 Query: 497 SVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGV 556 +VMP ++IN+K + + + EFF SS LSQ + N LS ITH RR+SALG GG+ R RAG Sbjct: 482 TVMPCEMINSKILGAVIREFFMSSALSQFMDQTNPLSEITHKRRISALGPGGLNRGRAGF 541 Query: 557 EMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVY 616 E+RDVH THYGRIC ET EG IGL++SL +A++N YGFIETPYR V DG+VT++V Y Sbjct: 542 EVRDVHTTHYGRICATETPEGATIGLINSLAIYAKINKYGFIETPYRYVRDGRVTDEVTY 601 Query: 617 LSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAA 676 LSA++E I QA+ +DE+G ++LV+CR E + +PR ++ F D S KQ+VS+AA Sbjct: 602 LSAIDEIKANICQASVRVDEEGYIVDDLVYCRRNYENVFIPRSEVQFADVSAKQIVSVAA 661 Query: 677 SLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 SLIPFLENDD+NR LMG NMQRQAVPL+ EAP VGTGME VA+ SGA IVAKRAG+V+ Sbjct: 662 SLIPFLENDDANRALMGSNMQRQAVPLIMPEAPLVGTGMEGYVARGSGAVIVAKRAGVVQ 721 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 +DA IV+ S +D Y L KF++SN NTC++QR +V G V++ DI+AD Sbjct: 722 YIDARNIVVASES----KDDFWIDSYTLCKFRKSNHNTCIHQRCVVHQGQRVKKGDILAD 777 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 GP+ G+LALGRN++VAF+ W GYNFEDS++IS +V +D+FTS+H+E FE + RDT+L Sbjct: 778 GPAIQKGELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSVHLEGFECVVRDTRL 837 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 GPEEITRD+ V+EE L +DE GI CVGA V GD+LVGK+TPK SP+TPEEKLLRAI Sbjct: 838 GPEEITRDVSGVAEEFLHCLDEFGIACVGANVEAGDVLVGKVTPKSSSPVTPEEKLLRAI 897 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 FGEKA+DV+D+SL +P GVSG VVDV++ R GI+K R++ +E++ I+ +D E Sbjct: 898 FGEKAIDVKDSSLYLPPGVSGCVVDVKVLQRRGIEKVGRALLIEKQAIDAEKTRRDHELA 957 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 +L IYS L E+L G+ A+S K +++ + + + R WW+ +V +++ Sbjct: 958 VLTNYIYSLLKEMLVGKVALSTLAPISKGDLITEEALEKIDRENWWKISVDG---ISSIK 1014 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 L+ ++ + ++ EKI+ DD+ GVL VVKVFVA+K +Q GDKM+GRHGN Sbjct: 1015 LLRQRFVDRFDEINKTYEENFEKIRGDDDLAQGVLMVVKVFVAVKHTLQPGDKMSGRHGN 1074 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG++SRI+P ED P+L DGTPVDI+LNPLGVPSRMNVGQI ETHLGWA LGKKI L+ Sbjct: 1075 KGVISRIVPAEDTPYLADGTPVDIILNPLGVPSRMNVGQILETHLGWAAYNLGKKISKLL 1134 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 ++ + S + + ++++ D ++ + + GVPV+ VF+G Sbjct: 1135 DEGNYSEVKSLVLEIYK---NDRKMMARLNEMTDAEIVEYSRSLRGGVPVAASVFEGPKT 1191 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 + I +L +A D SGQ +LYDG+TGE FDR VTVG YMLKL+H+V+DK++ARS G S Sbjct: 1192 DEIERLLVLAGKDPSGQEVLYDGVTGEKFDRKVTVGCKYMLKLHHLVNDKIHARSIG--S 1249 Query: 1277 LV-TQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAG 1335 V TQQPLGGKS+ GGQR GEME W +QAYGA + LQEMLTIKSDDVVGR VY+SIV G Sbjct: 1250 TVDTQQPLGGKSHFGGQRFGEMECWALQAYGATFALQEMLTIKSDDVVGRVNVYDSIVRG 1309 Query: 1336 NDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 ++ F G PESFNV++ E++AL L+++ + K Sbjct: 1310 DNDFYYGVPESFNVMMNELRALCLNVEFCSDLEKKKD 1346 >gi|307720239|ref|YP_003891379.1| DNA-directed RNA polymerase subunit beta [Sulfurimonas autotrophica DSM 16294] gi|306978332|gb|ADN08367.1| DNA-directed RNA polymerase subunit beta [Sulfurimonas autotrophica DSM 16294] Length = 1381 Score = 1351 bits (3496), Expect = 0.0, Method: Composition-based stats. Identities = 605/1383 (43%), Positives = 898/1383 (64%), Gaps = 34/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+ I++P+L+++Q++SYD FLM + R G++ F+SVFPI Sbjct: 10 RLRVDFSKTPQEIEVPNLLQLQQSSYDTFLM--LHAKNRSQSGIEKVFQSVFPIHDAQNR 67 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 +E++ E PK+ V +C+ R LTYAV L++ RLI+++ DE T K + DIKEQSI Sbjct: 68 LTVEYIESEVTNPKYTVRECMERGLTYAVSLRMKTRLILWERDENTKEKLGVADIKEQSI 127 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ D+PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ KL+Y +IIPD+G Sbjct: 128 FVRDIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESST-AGNKLIYTGQIIPDRGS 186 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D KDI+++RI++RRKVPVT ALG ++IL FYP + + + Sbjct: 187 WLYFEYDPKDILYMRINKRRKVPVTIMFRALGYSKQDILKLFYPIQTIKIHDNMFSIDFN 246 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 D +++S L+D+ + ++ SGK+L+S + L + GVK + + L Y+AE Sbjct: 247 PKDYA--SRISYDLIDM-NDKVLVSSGKRLSSKKAQKLLDDGVKEVQYPLEILLERYLAE 303 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ ETGE+ + IDE L+++ + + I + ++ I N D + Sbjct: 304 SIIDPETGEVLFDTMTHIDETKLKKMAEIGVTEFKIANDIAEGVDSSIINAFNADADSLK 363 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ T A+ N LFFD ++YDL+ VGR+KMN Sbjct: 364 LLKQTEEIEDENDLAAIRIYKVMRPGEPVTKEAAKIFVNQLFFDPERYDLTQVGRMKMNH 423 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L ++ P+ V + EDII +K ++ ++NG+G +DD D+LGNRR+RS+GE+L N+ G Sbjct: 424 KLGMNIPEYVTVLTHEDIIESVKYVIKVKNGQGHLDDRDHLGNRRIRSIGELLGNELHNG 483 Query: 479 LLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++I++++S++ ++ +MP DLIN+K + S + EFF QLSQ + N LS +T Sbjct: 484 LVKMQKAIRDKLSTMSGPMNELMPHDLINSKMITSTIMEFFSGGQLSQFMDQTNPLSEVT 543 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L +A+VN +G Sbjct: 544 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLAMYAKVNEHG 603 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PY+ + DGKVT+++VYL+A +EE + IA A++ LDE+G F E+L+ R GE +L Sbjct: 604 FIEAPYKVMKDGKVTHEIVYLTATQEEGKMIAAASNKLDENGQFIEDLIAVRQDGEILLR 663 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 ++ ++ D S + V+ +AASLIPFLE+DD+NR LMG NMQRQAVPLL+A AP VGTG+E Sbjct: 664 DPKECEYADLSSQMVIGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRANAPMVGTGIE 723 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 +VA+ + + AKRAG +E+VD I + E +D Y L K R+NQNT Sbjct: 724 KLVARDAWECVKAKRAGKIEKVDGKHIYVMGEED----GEIFIDYYPLQKNLRTNQNTSF 779 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q+P+VK+G+ V + IIADGP+ D G+LALG N +VAFMPW+GYNFED+++ISER++ + Sbjct: 780 TQKPIVKIGEMVEKGQIIADGPNMDQGELALGVNAMVAFMPWNGYNFEDAIVISERLIRQ 839 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E EV AR+ K G EEITRDIPNV ++ L ++DE GI+ +G V+ G ILVG Sbjct: 840 DAFTSVHIYEKEVEARELKHGVEEITRDIPNVRDDELAHLDESGIVKIGTTVSGGMILVG 899 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL P + G VVD+++F + G DK+ R+ Sbjct: 900 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSMEGVVVDIKVFTKKGYDKDPRA 959 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG----FKKSTVLSSDL 1012 + +E+E+ + L R+ D +++D+ R+ ++L + S K +K ++ D Sbjct: 960 LELEKEERDYLEREHYDRLIMIDKEEMLRVTKLLTREPLQSDIKIGDTEYKAGDTINGDD 1019 Query: 1013 ISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + E R +++Q K ++ K I D + K+ ++ D +P GV+ Sbjct: 1020 LKEVNRFAMNAIVKSFSQEIQDEYNKTKNHFQKQKRIFRDEHEEKLTILEKDDILPNGVV 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 + VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+++DG VD+ LNPLGVPSRM Sbjct: 1080 KYVKIYIATKRHLKVGDKMAGRHGNKGIVSNIVPEVDMPYMEDGRSVDVCLNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSH---TEKISDY 1188 N+GQI E HLG A LG +I+ + K I LR+ + ++ ++ I + Sbjct: 1140 NIGQILEMHLGMAGRELGNQIQEQ-FEAKQKDFIDDLRAKMIEIADVAGMMHASKVIGEM 1198 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 DD++ L+ A W GV +TP+F+G D + + +A +D G+ +LYDG TGE Sbjct: 1199 DDETFLKYARDWSKGVKFATPIFEGTDAKEFEKLYELAKMDSDGKRVLYDGKTGEKMKER 1258 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+Y+LKL+H+V +K++ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGA+ Sbjct: 1259 VNVGYMYILKLHHLVDEKIHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAS 1318 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 VL+EMLTIKSDDV GR R Y+++ G E+G PE+ VL KE+QAL L +++ + Sbjct: 1319 AVLKEMLTIKSDDVDGRVRAYKALTKGELVPESGIPETLFVLTKELQALALDVEIMDEVE 1378 Query: 1369 KNS 1371 + Sbjct: 1379 DDE 1381 >gi|317182449|dbj|BAJ60233.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori F57] Length = 2890 Score = 1350 bits (3495), Expect = 0.0, Method: Composition-based stats. Identities = 610/1409 (43%), Positives = 895/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+V EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYVGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMTK +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTKRTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FTSLD--ANQRMEFDLKDSQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE I Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEII 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGED----KEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDV 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K + LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFVKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL- 1363 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1364 -----ENSRTKNSAKMEEIP--DFNKCEL 1385 E+ K E+ DF+ +L Sbjct: 1373 GDDVDEDGTPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.7, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|317011400|gb|ADU85147.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori SouthAfrica7] Length = 2890 Score = 1350 bits (3495), Expect = 0.0, Method: Composition-based stats. Identities = 609/1409 (43%), Positives = 893/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ S KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESST-SSNKLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPIDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE ++ GE E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D Sbjct: 300 AEPVMVGE--EVLLDMLAQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFTADYES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII IK L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTIKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV ++ +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVMSETIYLTAIQEDSHVIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++DA I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDAKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +DVFTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDVFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S+ E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSMYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNQYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K + LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFVKALRAKMLEIANAINEKDPLTIHA 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKLAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSAK-----MEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDEMDEDGMPKPIVIKEDDRPKDFSAFQL 1401 >gi|315587086|gb|ADU41467.1| DNA-directed RNA polymerase [Helicobacter pylori 35A] Length = 2890 Score = 1350 bits (3493), Expect = 0.0, Method: Composition-based stats. Identities = 605/1409 (42%), Positives = 892/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+V EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYVGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELY 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGEPIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S ++ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSTYEKEKAKLDMEHFDRLTMLNREELLRVSLLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E +K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEIIKNNFLEQKKVLGEEHEEKLSILERDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKRVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPKPIVIKEDDRPKDFSSFQL 1401 >gi|307637872|gb|ADN80322.1| DNA-directed RNA polymerase beta subunit [Helicobacter pylori 908] gi|325996469|gb|ADZ51874.1| DNA-directed RNA polymerase beta subunit [Helicobacter pylori 2018] gi|325998058|gb|ADZ50266.1| DNA-directed RNA polymerase beta subunit [Helicobacter pylori 2017] Length = 2890 Score = 1350 bits (3493), Expect = 0.0, Method: Composition-based stats. Identities = 602/1399 (43%), Positives = 884/1399 (63%), Gaps = 44/1399 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ S KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESST-SSNKLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K KE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKIILLAGKKLTSRKIKEFKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFSADHES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +DVFTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDVFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +++R R+ +L + K +KK + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMINREELLRVSSLLSQAILEEPFSHKGKDYKKGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 + D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 ----NSRTKNSAKMEEIPD 1379 + M + D Sbjct: 1373 GDDVDEDGAPKPIMIKEDD 1391 Score = 39.3 bits (90), Expect = 5.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|108563562|ref|YP_627878.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori HPAG1] gi|123373708|sp|Q1CS68|RPOBC_HELPH RecName: Full=Bifunctional DNA-directed RNA polymerase subunit beta-beta'; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=RNA polymerase beta'; AltName: Full=Transcriptase subunit beta' gi|107837335|gb|ABF85204.1| DNA-directed RNA polymerase, beta subunit [Helicobacter pylori HPAG1] Length = 2890 Score = 1350 bits (3493), Expect = 0.0, Method: Composition-based stats. Identities = 605/1409 (42%), Positives = 890/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLSLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDSQ-GKIILLAGKKLTSKKIKELKENHLEWVEYPMDILINRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ + D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFLADYES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LRLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGAVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I ++ D K LR + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIARMLED-KTKDFAKELRVKMLEIANAINEKDPLTIHA 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 + D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +IV G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIVKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.7, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|268678994|ref|YP_003303425.1| DNA-directed RNA polymerase subunit beta [Sulfurospirillum deleyianum DSM 6946] gi|268617025|gb|ACZ11390.1| DNA-directed RNA polymerase, beta subunit [Sulfurospirillum deleyianum DSM 6946] Length = 1385 Score = 1349 bits (3492), Expect = 0.0, Method: Composition-based stats. Identities = 599/1383 (43%), Positives = 886/1383 (64%), Gaps = 35/1383 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P+ ID+P+L+++Q+ SY+ FL + + + G++ FKS+FPI Sbjct: 10 RLRVDFSKVPKKIDVPNLLQLQQKSYEQFLNVE---NLKDESGVEKVFKSIFPIHDPQNR 66 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSI 130 LE+ E P++ V +C+ R LTY+V +K+ +RLI++D DE TG K+ +KDIKEQ+I Sbjct: 67 ITLEYAGSEIGKPRYTVRECMERGLTYSVSIKMNIRLILWDKDEKTGEKTGVKDIKEQAI 126 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ ++PLMT +FVI G++R+VV+QLHRSPG+ F ++ + KL+Y +IIPD+G Sbjct: 127 FIREIPLMTDRTSFVINGVERVVVNQLHRSPGVIFKEEESPTVAN-KLIYNAQIIPDRGS 185 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD + VRI++RRKVP+T ALG ++IL FYP + R + + S Sbjct: 186 WLYFEYDAKDTLFVRINKRRKVPITILFRALGYSKQDILKLFYPVLNIMIRENKFLIEFS 245 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 A + + +V L D + G ++ +GK+L + E GVKF+ + L +++ Sbjct: 246 ADNFL--GRVDFDLKD-EHGNLLLAAGKRLARKKAEKFIEDGVKFIEYPVEILVNRFLSS 302 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK-- 368 I++ E+GE+ + +DE L +I + I I + + I N+ + D Sbjct: 303 PIIDQESGEVLYDTLAQLDEGKLAKIIEQKCETIEIANDLASGVDDAIINSFIADTETLK 362 Query: 369 ----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + A + IY+VMRPG+ T A+ LFF+S++YDL+ VGR+KMN Sbjct: 363 LLRQTENVEDENDLAAIRIYKVMRPGEPVTKEAAKLFVKDLFFNSERYDLTKVGRMKMNH 422 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L P+ V + EDII K L+ ++NG+G IDD D+LGNRR+R++GE+L N+ G Sbjct: 423 KLGLSVPEYVTIMTSEDIIKTAKYLIKVKNGQGHIDDRDHLGNRRIRAIGELLANELHSG 482 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++I+++ + S ++ +MP DLIN+K + S + EFF S QLSQ + N LS IT Sbjct: 483 LIKMQKAIRDKFTALSGSVEELMPHDLINSKMITSTIAEFFSSGQLSQFMDQTNPLSEIT 542 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L+ +A+VN G Sbjct: 543 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLSMYAKVNDLG 602 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+E PYRKV + +T++++Y++A +EE IA A++ ++E+ E+L+ R GE +++ Sbjct: 603 FVEAPYRKVENATITDEIIYITATQEEGLVIAPASTKINENNEIVEDLIEVRVDGETVMI 662 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 +EK+D ID S + +AASLIPFLE+DD+NR LMG NMQRQAVPL+K++AP VGTG+E Sbjct: 663 EKEKVDLIDLSSMMIAGVAASLIPFLEHDDANRALMGSNMQRQAVPLVKSDAPIVGTGVE 722 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 + A+ S AI A+RAGIVE+VD I I + D + +D Y L K R+NQNT Sbjct: 723 KIAARDSWEAIKARRAGIVEKVDNKNIYILGEDED----GAFIDHYALQKNLRTNQNTTF 778 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q+ +V+ GD V + +IADGPS D G+LA+G+N +VAFMPW+GYN+ED+++ISERM+ E Sbjct: 779 TQKVIVRRGDFVEKGGVIADGPSMDQGELAIGKNAMVAFMPWNGYNYEDAIIISERMIRE 838 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E EV AR+ K G EEIT+DIPNV EE L ++D+ GI+ VG + PG ILVG Sbjct: 839 DAFTSVHIYEKEVEARELKDGVEEITKDIPNVKEEELAHLDDSGIVKVGTYITPGMILVG 898 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL + G +VDV+IF + G DK+ R+ Sbjct: 899 KVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYASPSLEGIIVDVKIFTKKGYDKDPRA 958 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV----SGPKGFKKSTVLSSDL 1012 + ++ E+L R+ D+ ++LDR R+ +L + +KK + ++ Sbjct: 959 VQAYEQEKEILDREHHDKLLMLDREEMLRINALLLKNPLQEDQEINKQSYKKGQFIKAED 1018 Query: 1013 ISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + R D+ VQ + LK ++ K L++ K+ ++ D +P GV+ Sbjct: 1019 LQNVNRFSINSIVKAFDDGVQDAYKDLKAYFQNEKKKLKEEHDEKLNILEKDDILPSGVV 1078 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VKV++A KR ++ GDKMAGRHGNKGIVS I+ DMP+LK+G VDIVLNPLGVPSRM Sbjct: 1079 KLVKVYIATKRKLKVGDKMAGRHGNKGIVSNIVREVDMPYLKNGEIVDIVLNPLGVPSRM 1138 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E HLG LG +I+ + K I LR + + + Sbjct: 1139 NIGQILEVHLGLIGKRLGDQIEDI-FKEKQGDWIKSLREKMISIADVAKLMDSRNFMDTL 1197 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 +D+ +L A W GV ++P+F+G + E + MA +D G++ LYDG+TG+ Sbjct: 1198 NDEQLLGYARDWSKGVRFASPIFEGVNTEEFAKLFEMAKIDMDGKTDLYDGMTGQKMHEK 1257 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1258 VNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1317 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLT+KSDDV GR Y+++ G + +TG PE+F VL E+++L L +++ + Sbjct: 1318 HTLREMLTVKSDDVEGRILAYKALTRGENVPQTGIPETFYVLTNELKSLALDVEIYDEVE 1377 Query: 1369 KNS 1371 ++ Sbjct: 1378 EDD 1380 >gi|237751206|ref|ZP_04581686.1| bifunctional DNA-directed RNA polymerase [Helicobacter bilis ATCC 43879] gi|229372572|gb|EEO22963.1| bifunctional DNA-directed RNA polymerase [Helicobacter bilis ATCC 43879] Length = 2883 Score = 1349 bits (3492), Expect = 0.0, Method: Composition-based stats. Identities = 600/1397 (42%), Positives = 875/1397 (62%), Gaps = 35/1397 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K+ E +D+P+L+ +QK SYD FL ++ G++ KS+FPI +G Sbjct: 10 RLRVDFSKSQEELDVPNLLMLQKDSYDSFL----YSNDSRESGIERVLKSIFPIQDSAGR 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 LE+ EF K+ + + + R LTY++PLKI +RL+++D D+ +KDIKEQ+IY Sbjct: 66 VTLEYAGCEFGKQKYTIAETMVRGLTYSIPLKIKIRLVLWDKDDKGEQVGVKDIKEQTIY 125 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 + ++PLMT +F+I G++R+VV+QLHRSPG+ F D+ S + KL+Y +IIP+ G W Sbjct: 126 VREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEDESNTSAN-KLIYTGQIIPNMGAW 184 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 + E+D+KDI++VRI++RRK+PVT ALG ++I+ YP + S + D + P + Sbjct: 185 LYFEYDAKDIMYVRINKRRKMPVTILFRALGYSKQQIIQMLYPVLDVSVKKDKFYIPFNP 244 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD--CLCGLYVA 309 D+ + L++ G+ V+ +GK+ ++ L E+ + + + L Y+A Sbjct: 245 NDI--EGSLEYDLINEK-GQVVLPAGKRFNKKRIRDLNEQNISYDKVEFSTTNLLNTYLA 301 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK- 368 E +++ ++GE+ ++ ++E +++++ ++I I++ + + I N+ + D Sbjct: 302 EPVIDSKSGEVILDTLSPLNEANIKKLNDNKITKFKIIHDTAPGYDNSIINSFLADMESL 361 Query: 369 -----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 + A + IY+VMRP + T VA LFFD +YDL+ VGR+KMN Sbjct: 362 KNIRQTEKIDDECDLAAIRIYKVMRPAEPVTREVAHKFIEQLFFDPSRYDLTGVGRMKMN 421 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +LNL PD V + EDII +K L+ +RNGKG IDD D+LGNRR+R++GE+L N+ Sbjct: 422 HKLNLKVPDYVSVLTYEDIIETVKYLMQVRNGKGRIDDRDHLGNRRIRAIGELLANELHS 481 Query: 478 GLLRMERSIKERISSV-DIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 GL++M++SIK++++ ++VMP DLI++K + S + EFF S QLSQ + N LS IT Sbjct: 482 GLVKMQKSIKDKLTQQTSFENVMPHDLISSKMITSTIMEFFASGQLSQFMDQTNPLSEIT 541 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F +VN G Sbjct: 542 HKRRLSALGEGGLVKERVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTKVNDLG 601 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PY+KV DGK TN+VVYL+A +E+ + IA A++ LD E L+ RC GE L Sbjct: 602 FIEAPYKKVVDGKTTNEVVYLTATQEDGKVIAPASTKLDSTNKIVEGLIETRCGGEISLR 661 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 E ++ ID S + +V +AASLIPFLE+DD+NR LMG NMQRQAVPLLK +AP VGTG+E Sbjct: 662 KTEDVELIDLSARMLVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKPDAPIVGTGIE 721 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 SV+A+ S AAI AK+ G+VE+VD I I + + +D Y + K R+NQNT Sbjct: 722 SVIARDSWAAIKAKQGGVVEKVDGKNIYILGENE----NGAYIDSYSMQKNMRTNQNTSF 777 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 QRP+VKVGD+++ IIADG S D G+LALG+N+ VAFMPW+GYNFED++++SE ++ + Sbjct: 778 TQRPIVKVGDKIKAGQIIADGASMDSGELALGKNIRVAFMPWYGYNFEDAIVVSENIIKD 837 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT DIPNV E+ + ++DE GI+ +G V G ILVG Sbjct: 838 DAFTSVHIYEKEIEARELKHGIEEITADIPNVREDSIAHLDESGIVKIGTYVTGGMILVG 897 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K+TPKG+ TPEE+LLRAIFGEKA V + SL P + G VVDV+IF + G +K+ R+ Sbjct: 898 KVTPKGDVKPTPEERLLRAIFGEKAGHVVNKSLYCPQSMEGYVVDVKIFTKKGYEKDARA 957 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ----NAVSGPKGFKKSTVLSSDL 1012 ++ L + + +L++ R+ +L + A K FKK + Sbjct: 958 RQAYEDEKSDLDIEHHERLTMLNKEEMLRISYVLSKEPLSAEAKINDKVFKKGECIPKKE 1017 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + R +++Q E +K + K +L + K+ ++ D +P GV+ Sbjct: 1018 FDDINRFALNTLIKSYSKEIQNQYEQIKNNFLEQKRVLGVEHEEKLAILEKDDILPNGVV 1077 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ KDG P+DI+LNPLGVPSRM Sbjct: 1078 KLVKIYIATKRKLKVGDKMAGRHGNKGIVSNIVPAVDMPYTKDGEPIDIILNPLGVPSRM 1137 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDIS---PLRSFLEKVIGTGSHTEKISDY 1188 N+GQI E HLG G++I+ + + + + V S + + Sbjct: 1138 NIGQILEVHLGLIGKRFGEQIEDELKKSQYEFSTELKAKMIEIAKAVNEDDSVIKILESA 1197 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D +L A W +GV + PVF+G +E N + MA +D G++ LYDG TGE Sbjct: 1198 SKDDLLAYARDWSNGVKFAIPVFEGISQEKFNKLFEMARIDMDGKTELYDGKTGEKIKER 1257 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA Sbjct: 1258 VNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAA 1317 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 + L+EMLTIKSDDV GR YE+I G ++ PE+F VL KE+Q+L L +++ Sbjct: 1318 HTLKEMLTIKSDDVNGRREAYEAITKGYPIGDSAIPETFYVLTKELQSLALDVNVYGENQ 1377 Query: 1369 KNSAKMEEIPDFNKCEL 1385 + E + Sbjct: 1378 DEPLVISEKEKDRPKDF 1394 >gi|109948061|ref|YP_665289.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter acinonychis str. Sheeba] gi|123066105|sp|Q17VN6|RPOBC_HELAH RecName: Full=Bifunctional DNA-directed RNA polymerase subunit beta-beta'; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=RNA polymerase beta'; AltName: Full=Transcriptase subunit beta' gi|109715282|emb|CAK00290.1| DNA-directed RNA polymerase beta chain [Helicobacter acinonychis str. Sheeba] Length = 2890 Score = 1349 bits (3492), Expect = 0.0, Method: Composition-based stats. Identities = 605/1409 (42%), Positives = 891/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDAQ 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKAKYTVREAMERGITYSIPLKIKVRLILWEKDAKNGEKTGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTEHTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKDI++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDILYARINKRRKVPVTILFRAMDYQKQDIIKIFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLT +K LKE ++++ D L Y+ Sbjct: 243 FASLD--ANQRMEFDLKDAQ-GKTILLAGKKLTPRKIKELKENHLEWVEYPMDILLNRYL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + EI ++ +D+ L++I +++ I+ ++ ++A I ++ + D Sbjct: 300 AEPV--MAGKEILLDMLTQLDKNKLDKIHDLGVQEFVIINDLALGHDASIIHSFLADYES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + IY+VMRPG+ T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LRLLKQTEKIDDENALAAIRIYKVMRPGEPITTEVAKQFVKQLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVMGETIYLTAIQEDSHVIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 ++I+ R + ++VQ E K + K +L + + K+ ++ D +P G Sbjct: 1014 EVIASINRFTLASLVKKYSKEVQNQYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ + + + LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASML-ENQTRDFVKELRTKMLEIANAINEKDLLTIHA 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 + D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LENCSDEELLEYAKDWSRGVKLAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSAK-----MEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDEMDEDGMPKPIVIKEDDRPKDFSSFQL 1401 Score = 39.7 bits (91), Expect = 3.5, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 31/55 (56%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+S +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEESAKKVVEAGIKSITI 2247 >gi|325104981|ref|YP_004274635.1| DNA-directed RNA polymerase subunit beta [Pedobacter saltans DSM 12145] gi|324973829|gb|ADY52813.1| DNA-directed RNA polymerase subunit beta [Pedobacter saltans DSM 12145] Length = 1266 Score = 1348 bits (3490), Expect = 0.0, Method: Composition-based stats. Identities = 593/1368 (43%), Positives = 822/1368 (60%), Gaps = 118/1368 (8%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R F ++ +ID PD ++VQ S+ F + D R EGL F FPI+ Sbjct: 4 KNNQRINFAQSKHVIDYPDFLDVQIQSFKEFFQLETTSDNRHTEGLFQVFAENFPISDSR 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEF+ Y DPP++D+ +C+ R LTY+VPLK LRL D + + Q Sbjct: 64 NIFVLEFLDYFIDPPRYDIQECIERGLTYSVPLKAKLRLSCNDEEHEDFETIV-----QD 118 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +Y+G +P MT GTFVI G +R++VSQLHRSPG+ F + +G LY+ R+IP +G Sbjct: 119 VYLGTIPYMTPKGTFVINGAERVIVSQLHRSPGVFFGVSR---HTNGTKLYSARVIPFKG 175 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ D ++++ IDR++K PVT+ L A+G D++ +IL F Sbjct: 176 SWIEFATDVNNVMYAYIDRKKKFPVTTLLRAIGYDADKDILEIFDLADEVKVSKSGLKK- 234 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 G+KL + +LK E V Sbjct: 235 --------------------------YVGRKLAARVLKKWVEDFVDEDT----------- 257 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTDKN 367 ++V+ + EI +E ++++ ++ I + ++ + + DS + + I NTL D + Sbjct: 258 -GEVVSIDRNEIILERETILEDDHIDMIVDAGVKTLILSKEDSNSGDYTIIYNTLQKDTS 316 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 K+A+ IYR +R + A + + LFF +YDL VGR ++N +L LDTP++ Sbjct: 317 NSAKEAVEHIYRQLRNAEPPDEETARGIIDRLFFSDKRYDLGDVGRYRINRKLQLDTPEE 376 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 + + KEDIIAI+K L+ L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I+ Sbjct: 377 TKVLTKEDIIAIVKYLIKLINSKEEVDDIDHLSNRRVRTVGEQLYAQFGVGLSRMARTIR 436 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER++ D + P DLINA+ + S + FF ++QLSQ + N L+ ITH RRLSALG G Sbjct: 437 ERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPG 496 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC- 606 G++R RAG E+RDVH THYGR+C ET EG NIGL+SSL A++N GFIETPYRKV Sbjct: 497 GLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKINNLGFIETPYRKVVE 556 Query: 607 -DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 V V+YLSA +E+ + IAQAN+ D+ G+F +E V R G+ ++ EK+D++D Sbjct: 557 GKVSVNEPVIYLSAEDEDAKTIAQANAQYDDKGNFIDEKVKARYEGDFPVIEPEKLDYMD 616 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 SP Q+ SIAASLIPFLE+DD+NR LMG NMQRQAVPLL+ EAP VGTG+E VA S Sbjct: 617 VSPNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLEGRVASDSRT 676 Query: 726 AIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 I A+ GIVE VDA +I I+ + +L Y L+KF+++NQ+TC+N +P+V Sbjct: 677 LINAEGNGIVEYVDANQITIKYDRNEDDELVSFDGESKTYNLIKFKKTNQSTCINLKPIV 736 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + G+ V + ++ +G +T+ G+LALGRN+ VAFMPW GYNFED+++ISER+VS+D+FTS+ Sbjct: 737 RKGERVVKGQVLCEGYATENGELALGRNLKVAFMPWQGYNFEDAIVISERVVSQDIFTSV 796 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEEFE+ RDTK G EE+T DIPNVSEE K++DE GII VGAEV GDIL+GKITPKG Sbjct: 797 HIEEFELEVRDTKRGEEELTPDIPNVSEEATKDLDENGIIRVGAEVKEGDILIGKITPKG 856 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ES +PEEKLLRAIFG+KA DV+D SL+ P ++G V+D ++F+R + S + E+ Sbjct: 857 ESDPSPEEKLLRAIFGDKAGDVKDASLKTPPSINGVVIDTKLFSRA----KKTSKAEEKS 912 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-----KSTVLSSDLISEYP 1017 Q++ L + L + +L I+ G+ + +K K + L+ E Sbjct: 913 QLDKLEAKHEKAVRELRETLVDKLFNIVNGKTSQGVYNVYKELLIAKGVKFTQKLLMELD 972 Query: 1018 RSQWW-QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 + DE +++L Y + ++ I GD++P G++++ KV Sbjct: 973 YNHINPTKWTTDEDKNELIKALLHNYGIKVNEELGAYRRDKFAISVGDELPSGIVQMAKV 1032 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 +VA KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL DGTPVDIVLNPLGVPSRMN+GQI Sbjct: 1033 YVAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLADGTPVDIVLNPLGVPSRMNLGQI 1092 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 +ET LGWA LG K + I D + ++ Sbjct: 1093 YETILGWAGKELGLKFATPIFDGASQEEV------------------------------- 1121 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 E+ I A + ESG++ L+DGLTGE FD+P TVG IYM Sbjct: 1122 -------------------EDYIK----KAGIPESGRTYLHDGLTGERFDQPTTVGIIYM 1158 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA +LQE+LT Sbjct: 1159 LKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAANILQEILT 1218 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 +KSDDVVGR + YE+IV G + G PESFNVLV E++ LGL I L+ Sbjct: 1219 VKSDDVVGRAKTYEAIVKGENLPTPGVPESFNVLVHELRGLGLDITLD 1266 >gi|308184945|ref|YP_003929078.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori SJM180] gi|308060865|gb|ADO02761.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori SJM180] Length = 2890 Score = 1348 bits (3490), Expect = 0.0, Method: Composition-based stats. Identities = 608/1409 (43%), Positives = 893/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ + D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNRLEKIHDLGVQEFMIINDLALGHDASIIHSFLADYES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E+N IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDNHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ + K LR+ + ++ T + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASML-EGKTKDFAKELRAKMLEIANTINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDGELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL- 1363 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1364 -----ENSRTKNSAKMEEIP--DFNKCEL 1385 E+ K E+ DF+ +L Sbjct: 1373 GDDVDEDGSPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.7, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|317177942|dbj|BAJ55731.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori F16] Length = 2890 Score = 1348 bits (3490), Expect = 0.0, Method: Composition-based stats. Identities = 607/1409 (43%), Positives = 893/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+V EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYVGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ S L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMESDLKDPQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEVLAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNA----VSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDIEHFDRLTMLNREELLRVSSLLSQEILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K + LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFVKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.5 bits (88), Expect = 8.3, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED ++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDAIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|210135356|ref|YP_002301795.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori P12] gi|210133324|gb|ACJ08315.1| DNA-directed RNA polymerase beta subunit [Helicobacter pylori P12] Length = 2874 Score = 1348 bits (3490), Expect = 0.0, Method: Composition-based stats. Identities = 606/1409 (43%), Positives = 890/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I + D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++DA I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDAKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGAEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTRDFAKELRAKMLEIANAINEKDPLTTHA 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 + D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPKPIVIKEDDRPKDFSSFQL 1401 Score = 39.3 bits (90), Expect = 5.5, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|308063978|gb|ADO05865.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori Sat464] Length = 2890 Score = 1348 bits (3489), Expect = 0.0, Method: Composition-based stats. Identities = 608/1409 (43%), Positives = 890/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL E G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKEGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I + D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+ +AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRNDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL- 1363 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1364 -----ENSRTKNSAKMEEIP--DFNKCEL 1385 E+ K E+ DF+ +L Sbjct: 1373 GDDVDEDGSPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.7, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|317014586|gb|ADU82022.1| bifunctional DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori Gambia94/24] Length = 2890 Score = 1348 bits (3489), Expect = 0.0, Method: Composition-based stats. Identities = 602/1399 (43%), Positives = 883/1399 (63%), Gaps = 44/1399 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ S KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESST-SSNKLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFSADHES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +DVFTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDVFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W V ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKSVKIAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 ----NSRTKNSAKMEEIPD 1379 + M + D Sbjct: 1373 GDDVDEDGAPKPIMIKEDD 1391 Score = 39.3 bits (90), Expect = 5.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|188527984|ref|YP_001910671.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori Shi470] gi|212288452|sp|B2UUV9|RPOBC_HELPS RecName: Full=Bifunctional DNA-directed RNA polymerase subunit beta-beta'; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=RNA polymerase beta'; AltName: Full=Transcriptase subunit beta' gi|188144224|gb|ACD48641.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori Shi470] Length = 2890 Score = 1348 bits (3488), Expect = 0.0, Method: Composition-based stats. Identities = 608/1409 (43%), Positives = 890/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL E G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKEGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I + D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+ +AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRNDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAINGKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL- 1363 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1364 -----ENSRTKNSAKMEEIP--DFNKCEL 1385 E+ K E+ DF+ +L Sbjct: 1373 GDDVDEDGSPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.7, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|317180925|dbj|BAJ58711.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori F32] Length = 2890 Score = 1347 bits (3486), Expect = 0.0, Method: Composition-based stats. Identities = 604/1409 (42%), Positives = 891/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDDH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ +S Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQISK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I +++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIANMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL +E+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTRELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|217034097|ref|ZP_03439518.1| hypothetical protein HP9810_893g44 [Helicobacter pylori 98-10] gi|216943492|gb|EEC22946.1| hypothetical protein HP9810_893g44 [Helicobacter pylori 98-10] Length = 2890 Score = 1347 bits (3485), Expect = 0.0, Method: Composition-based stats. Identities = 605/1409 (42%), Positives = 890/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+V EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYVGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDSQ-GKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADFES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEVYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADG S D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGSSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +++ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYERDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R F + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASFVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.7, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|317178505|dbj|BAJ56293.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori F30] Length = 2890 Score = 1346 bits (3484), Expect = 0.0, Method: Composition-based stats. Identities = 608/1409 (43%), Positives = 893/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+V EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYVGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKGEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKVKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL- 1363 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1364 -----ENSRTKNSAKMEEIP--DFNKCEL 1385 E+ K E+ DF+ +L Sbjct: 1373 GDDVDEDGTPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.7, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|308183302|ref|YP_003927429.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori PeCan4] gi|308065487|gb|ADO07379.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori PeCan4] Length = 2890 Score = 1346 bits (3483), Expect = 0.0, Method: Composition-based stats. Identities = 607/1408 (43%), Positives = 884/1408 (62%), Gaps = 46/1408 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL E G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKEGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE I E+ ++ +D+ LE+I +++ I+ ++ ++A I + D Sbjct: 300 AEPI--MVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIA 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEK----I 1185 RMN+GQI E HLG GK+I S++ D + LE + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLEDKTKDFAKELHAKMLEIANAINEKDPLTIHVL 1193 Query: 1186 SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPF 1245 ++ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1194 ESCSNEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKM 1253 Query: 1246 DRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAY 1305 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++AY Sbjct: 1254 RERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAY 1313 Query: 1306 GAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL-- 1363 GAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1314 GAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFG 1373 Query: 1364 ----ENSRTKNSAKMEEIP--DFNKCEL 1385 E+ K E+ DF+ +L Sbjct: 1374 DDVDEDGSPKPIVIKEDDRPKDFSSFQL 1401 Score = 39.3 bits (90), Expect = 5.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|15645812|ref|NP_207989.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori 26695] gi|41017590|sp|O25806|RPOBC_HELPY RecName: Full=Bifunctional DNA-directed RNA polymerase subunit beta-beta'; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|2314357|gb|AAD08242.1| DNA-directed RNA polymerase, beta subunit (rpoB) [Helicobacter pylori 26695] Length = 2890 Score = 1346 bits (3483), Expect = 0.0, Method: Composition-based stats. Identities = 604/1409 (42%), Positives = 888/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL E G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKEGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I + D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGES----KEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SE + Sbjct: 774 SFNQVPIVKVGDKVGAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSECIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I ++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIARMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHA 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 + D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPKPIVIKEDDRPKDFSSFQL 1401 Score = 39.3 bits (90), Expect = 5.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|308062478|gb|ADO04366.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori Cuz20] Length = 2890 Score = 1345 bits (3482), Expect = 0.0, Method: Composition-based stats. Identities = 606/1409 (43%), Positives = 889/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL E G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKEGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I + D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SE + Sbjct: 774 SFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSECIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R + +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLHVSSLLSQAILEEPFSHNGKDYKEGDRIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAINKKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL- 1363 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1364 -----ENSRTKNSAKMEEIP--DFNKCEL 1385 E+ K E+ DF+ +L Sbjct: 1373 GDDVDEDGSPKPIVIKEDDRPKDFSSFQL 1401 Score = 39.3 bits (90), Expect = 5.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|317012978|gb|ADU83586.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori Lithuania75] Length = 2890 Score = 1345 bits (3482), Expect = 0.0, Method: Composition-based stats. Identities = 604/1409 (42%), Positives = 888/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL E G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKEGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDSQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K +NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLHTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I ++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIARMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHA 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|297380379|gb|ADI35266.1| DNA-directed RNA polymerase, beta subunit [Helicobacter pylori v225d] Length = 2890 Score = 1345 bits (3481), Expect = 0.0, Method: Composition-based stats. Identities = 607/1409 (43%), Positives = 888/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SY FL E G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYVSFL----YSKEGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I + D Sbjct: 300 AEPV--MVGKEVVLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+ +AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRNDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I + + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYLLGE----GKEEAYIDTYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQDEK-VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + K VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLAGLVKKYPKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL- 1363 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1364 -----ENSRTKNSAKMEEIP--DFNKCEL 1385 E+ K E+ DF+ +L Sbjct: 1373 GDDVDEDGSPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.7, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|254779745|ref|YP_003057851.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori B38] gi|254001657|emb|CAX29831.1| Bifunctional DNA-directed RNA polymerase subunit beta-beta'[DNA-directed RNA polymerase subunit beta (Transcriptase subunit beta) (RNA polymerase subunit beta); DNA-directed RNA polymerase subunit beta' (Transcriptase subunit beta') (RNA polymerase subunit beta')] [Helicobacter pylori B38] Length = 2890 Score = 1345 bits (3480), Expect = 0.0, Method: Composition-based stats. Identities = 605/1409 (42%), Positives = 892/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL++ +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIHTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKIILLAGKKLTSRKIKELKENHLEWVEYPMDILINRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ + D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFLADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +DVFTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDVFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 + D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.7, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|261839919|gb|ACX99684.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori 52] Length = 2890 Score = 1344 bits (3478), Expect = 0.0, Method: Composition-based stats. Identities = 603/1409 (42%), Positives = 888/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ + D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFLADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGNDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I ++ D K LR + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIARMLED-KTKDFAKELRVKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPKPIVIKEDDRPKDFSSFQL 1401 Score = 38.9 bits (89), Expect = 5.7, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|317009875|gb|ADU80455.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori India7] Length = 2890 Score = 1342 bits (3474), Expect = 0.0, Method: Composition-based stats. Identities = 604/1409 (42%), Positives = 890/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVRETMERGITYSIPLKIRVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ + D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFLADSES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVGAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRISSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I ++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIARMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LESCSDEELLDYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPKPIVIKEDDRPKDFSSFQL 1401 Score = 39.3 bits (90), Expect = 5.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|217032208|ref|ZP_03437706.1| hypothetical protein HPB128_2g10 [Helicobacter pylori B128] gi|216946079|gb|EEC24690.1| hypothetical protein HPB128_2g10 [Helicobacter pylori B128] Length = 2890 Score = 1340 bits (3469), Expect = 0.0, Method: Composition-based stats. Identities = 602/1409 (42%), Positives = 891/1409 (63%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL E G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKEGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++ LKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSISLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ SL+ KL+ +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLICTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I + +++ I+ ++ ++A I ++ + D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNKLEKIHNLGVQEFVIINDLALGHDASIIHSFLADYES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VK+GD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKMGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +DVFTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDVFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I +++ + K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIANML-ENKTKDFAKELRAKMLEIANAINEKDPLTIHA 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 + D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGVPKPIVIKEDDRPKDFSSFQL 1401 Score = 39.3 bits (90), Expect = 5.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|322379399|ref|ZP_08053769.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter suis HS1] gi|321148108|gb|EFX42638.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter suis HS1] Length = 2900 Score = 1340 bits (3468), Expect = 0.0, Method: Composition-based stats. Identities = 611/1419 (43%), Positives = 895/1419 (63%), Gaps = 51/1419 (3%) Query: 7 FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPIT 66 R+R F + P+ + +P+L+ +QK SY+ FL + G++ FKSVFPI Sbjct: 2 KTLKNRLRADFTRVPQELQVPNLLFLQKESYEAFL----YAKDGKESGIERVFKSVFPIH 57 Query: 67 AFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDI 125 LE+ YE+ PK+ V + + R +TY+V LKI +RLI+++ D TG K KDI Sbjct: 58 DSQNRITLEYGGYEYGEPKYTVREAMERGITYSVYLKIKIRLILWEKDPKTGEKLGPKDI 117 Query: 126 KEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRII 185 KEQSI++ ++PLMT +F+I G++R+VV+QLHRSPG+ F +K + + KL+YA +II Sbjct: 118 KEQSIFIREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEKS-TTSTNKLIYAGQII 176 Query: 186 PDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYP--KIVYSQRGD 243 PD+G W+ E+D KDI+HVRI++RRKV T A+G ++I+ FYP K+ + Sbjct: 177 PDRGSWLYFEYDVKDILHVRINKRRKVSATILFRAIGYSKQDIIKIFYPLLKVRHRVIKG 236 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + ++V +++ L D G ++ + KK+T+ K ++E GV+++ + L Sbjct: 237 ESKYYIPFESIIVDSRLDFDLKDEK-GRVLLAASKKVTARKAKEIRESGVEWVEYPTKIL 295 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 Y+AE I++ + ++A ++++ L++I + I I ++ ++A I + Sbjct: 296 LNRYLAEPIMDTNQS-VLLDALTLLEQPKLDKIREAGIDAFVIANDLALGHDASIIRSFT 354 Query: 364 TDKNKDRKD-----------------ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKY 406 +D R + A + IY+VMRPGD T VA++ LFFD ++Y Sbjct: 355 SDAESLRNESLKLLKQSEKIEDESALAAIRIYKVMRPGDPVTTEVAKTYVQQLFFDPERY 414 Query: 407 DLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 DL+ VGR+KMN +L+L P+ V + EDII +K L+ ++NG+G IDD D+LGNRR+R+ Sbjct: 415 DLTMVGRMKMNHKLHLKVPNYVTVLTHEDIIETVKYLIKIKNGQGRIDDRDHLGNRRIRA 474 Query: 467 VGEMLKNQYRLGLLRMERSIKERISSVDI--DSVMPQDLINAKPVVSAVCEFFCSSQLSQ 524 VGE+L N+ GL++M+++IK+++++++ DS+MP DL+N+K + S + EFF S QLSQ Sbjct: 475 VGELLSNELHEGLMKMQKTIKDKLTTMNNALDSLMPHDLVNSKMITSTILEFFMSGQLSQ 534 Query: 525 LEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + N LS +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL++ Sbjct: 535 FMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLIN 594 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 +L++F RVN GFIE PY+KV +G V + YL+A++EE IA A++ +D G E+L Sbjct: 595 TLSTFTRVNDLGFIEAPYKKVVEGHVGEQIEYLTAIQEEGHVIAPASTVVDSKGYIQEDL 654 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLL 704 V R GE +L + K+ +D S + +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL Sbjct: 655 VETRVGGEIVLNEKHKVTLMDLSSRILVGVAASLIPFLEHDDANRALMGTNMQRQAVPLL 714 Query: 705 KAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRL 764 ++EAP VGTG+ESV+A+ S +I A+R G+V++VDA I I + + Y L Sbjct: 715 RSEAPIVGTGIESVIARDSWGSIKAERKGVVDEVDAGNIYIVEKDPQK---GPHITSYLL 771 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 K R+NQNTC NQ P+VKVGD V IIADGPS D G+LALG+N+ VAFMPW+GYNFE Sbjct: 772 QKNLRTNQNTCFNQVPIVKVGDVVEEGQIIADGPSMDKGELALGKNVRVAFMPWNGYNFE 831 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 D++++SE+++ EDVFTS+HI E E+ AR+ K G EE T DIP+V EE + ++D GI+ + Sbjct: 832 DAIVVSEKIIKEDVFTSVHIYEKEIEARELKHGIEEFTADIPDVKEEEVAHLDSGGIVKI 891 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 G V PG ILVGK++PKGE TPEE+LLRAIFG+KA V + SL P + GTV+ V+I Sbjct: 892 GTYVAPGMILVGKVSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIGVKI 951 Query: 945 FNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ----NAVSGPK 1000 F + G +++ R+ + E+ +L D ++D+ ++ +I + AV Sbjct: 952 FTKKGYERDTRATNAYEEEKWVLDDRHDKHFKMIDKEELLQISDIFSQEPLEEEAVFNEI 1011 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 + K + + ++I R A + ++VQ E +K+ K +L + K+ Sbjct: 1012 TYPKGSKIPREVIEGSNRFGLISLAKKYSKEVQDRFEQIKINILEQKKLLGQGHEKKLSI 1071 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 ++ D +P GV+++VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVD Sbjct: 1072 LEKDDILPNGVIKLVKIYIATKRKLKVGDKMAGRHGNKGIVSNIVPIADMPYTADGEPVD 1131 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--- 1176 IVLNPLGVPSRMN+GQI E HLG LGK+IK+L+ D + I+ LRS + ++ Sbjct: 1132 IVLNPLGVPSRMNIGQILEVHLGLVGKELGKQIKALL-DSQTKDFIAKLRSKMLEIARVV 1190 Query: 1177 --GTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 + + + D +L A W SGV + PVF+G EE + ++A +D G++ Sbjct: 1191 NVDNQTLAQILESCSDTDLLSYARDWSSGVKFAIPVFEGISEEQFMELFKLAKIDLDGKT 1250 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 LYDG TGE V VGY+YMLKL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR Sbjct: 1251 ELYDGRTGEKMKERVNVGYMYMLKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRF 1310 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGAA+ L+EMLT+KSDD+ GR Y +I G E+ PE+F VL KE+ Sbjct: 1311 GEMEVWALEAYGAAHTLKEMLTVKSDDIKGRENAYRAIARGEHVGESEIPETFYVLTKEL 1370 Query: 1355 QALGLSIDLENSRTKN------SAKMEEIP--DFNKCEL 1385 Q+L L +++ N E+ DFN +L Sbjct: 1371 QSLALDVNIFNEEVDEFGMPKPIVIKEDDRPKDFNSFQL 1409 Score = 41.2 bits (95), Expect = 1.3, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + EDI++ T EI A +I E+ + I + I+ + I Sbjct: 2201 GSELIEPLEERIFGRVIVEDILDPLTNEILFSADTLITEEKAKRIIEAGIKSVII 2255 >gi|223038986|ref|ZP_03609278.1| DNA-directed RNA polymerase, beta subunit [Campylobacter rectus RM3267] gi|222879959|gb|EEF15048.1| DNA-directed RNA polymerase, beta subunit [Campylobacter rectus RM3267] Length = 1352 Score = 1340 bits (3468), Expect = 0.0, Method: Composition-based stats. Identities = 599/1364 (43%), Positives = 873/1364 (64%), Gaps = 35/1364 (2%) Query: 30 IEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVD 89 +++QK S+D FL ++ + G++ FKS+FPI LE+VS E PK+ + Sbjct: 2 LQLQKKSFDQFLNVD---KNQSESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIR 58 Query: 90 DCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSIYMGDLPLMTKDGTFVIKG 148 +C+ R LTY+V LK+ +RLIV + DE TG K IKDIKEQ I++ ++PLMT +F+I G Sbjct: 59 ECMERGLTYSVNLKMKIRLIVHERDEKTGEKIGIKDIKEQEIFVREIPLMTDRISFIING 118 Query: 149 IQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDR 208 ++R+VV+QLHRSPG+ F ++ ++ KL+Y +IIPD+G W+ E+D+KD++ VRI++ Sbjct: 119 VERVVVNQLHRSPGVIFKEEESPTVVN-KLIYTAQIIPDRGSWLYFEYDTKDVLCVRINK 177 Query: 209 RRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDID 268 RRKVPVT ALG ++I+ FYP + + + + P + D +V + D + Sbjct: 178 RRKVPVTILFRALGYKKQDIIKLFYPIQTLTIKNNKFLTPFNPDDY--QGRVEYDIKD-E 234 Query: 269 TGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVI 328 G + E+GK+LT + G+KF+ ++ L ++A +++ +GE+ + + Sbjct: 235 EGNVLHEAGKRLTKKKADKIIADGIKFVEYPTEILVNRFLAHPVIDKNSGEVLYDTLAQL 294 Query: 329 DEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK------------DRKDALLD 376 DE L +I ++ I I + + I N+ + D + A + Sbjct: 295 DENKLVKIL-ADQESIEIANDLAAGVDDAIINSFIADNETLKLLRQTENVDDENDLAAIR 353 Query: 377 IYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDI 436 IY+VMRPG+ A + N LFF+ ++YDL+ VGR+KMN +L L+ P+ V + EDI Sbjct: 354 IYKVMRPGEPVVKDAARAFVNDLFFNPERYDLTGVGRMKMNHKLALEVPEYVTVLTNEDI 413 Query: 437 IAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS-VDI 495 I K L+ ++NG+G IDD D+LGNRR+RS+GE+L N+ LG ++M+++I+++ ++ + Sbjct: 414 IKTAKYLIKVKNGQGHIDDRDHLGNRRIRSIGELLANELHLGFVKMQKAIRDKFTTLSNT 473 Query: 496 DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAG 555 + +MP DL+N K + + + EFF QLSQ + N LS +TH RRLSALG+GG+ + RAG Sbjct: 474 EEIMPYDLVNPKMITTTIMEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRAG 533 Query: 556 VEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVV 615 E+RDVHPTHYGRICP ET EG NIGL+++L+++A+VN GF+E PY+KV DGKVT+++V Sbjct: 534 FEVRDVHPTHYGRICPVETPEGQNIGLINTLSTYAKVNNLGFVEAPYKKVIDGKVTDEIV 593 Query: 616 YLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIA 675 YL+A +EEN IA A++ LDE G E+L+ R GE IL RE + ID + +A Sbjct: 594 YLTATQEENLVIAPASTVLDESGYIVEDLIEARQDGEMILAKREDVKLIDLCSGMIAGVA 653 Query: 676 ASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIV 735 ASLIPFLE+DD+NR LMG NMQRQAVPLL++ AP VGTGMES VA+ + AI A+RAGIV Sbjct: 654 ASLIPFLEHDDANRALMGSNMQRQAVPLLRSSAPIVGTGMESTVARDAWEAIKARRAGIV 713 Query: 736 EQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIA 795 E+VD I I + + +D Y + K R+NQNT +Q P+VK G+ V IIA Sbjct: 714 EKVDNKNIFILGEDE----AGPYIDHYSMEKNLRTNQNTTFSQCPIVKKGESVVAGQIIA 769 Query: 796 DGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTK 855 DGPS + G+LA+G+N L+AFMPW+GYN+ED+++ISE+M+ ED FTS+HI E E+ AR+ K Sbjct: 770 DGPSMERGELAIGKNALIAFMPWNGYNYEDAIVISEKMIREDAFTSVHIYEKEIEARELK 829 Query: 856 LGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRA 915 G EEIT+DIPN+ EE L ++D+ GII +G +V PG ILVGK++PKGE TPEE+LLRA Sbjct: 830 DGVEEITKDIPNIKEEDLLHLDDSGIIKIGTQVKPGMILVGKVSPKGEVKPTPEERLLRA 889 Query: 916 IFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQ 975 IFGEKA V + SL + + G VVDV+IF + G +K+ RS V E+ ++ D Sbjct: 890 IFGEKAGHVVNKSLYATASMEGVVVDVKIFTKKGHEKDSRSNKVYEEEKAAFEKEHHDRL 949 Query: 976 VILDRNIYSRLMEILCGQNAVS----GPKGFKKSTVLSSDLISEYPRSQWWQFAVQ-DEK 1030 ++LDR ++ +LC S G K +KK + + R + Sbjct: 950 LMLDREEMLKVGALLCKTPLSSAQTIGKKTYKKGEKIDKEEFENINRFTLSAIVKGFSKD 1009 Query: 1031 VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKM 1090 VQR+ + +K ++ K L++ K+E ++ D +P GV+++VKV++A KR ++ GDKM Sbjct: 1010 VQRSYDDIKNHFQNEKKKLKEEHDAKMEILEKDDILPSGVVKLVKVYIATKRKLKVGDKM 1069 Query: 1091 AGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGK 1150 AGRHGNKGIVS I+P DMP+L G PVDIVLNPLGVPSRMN+GQI E+HLG LG+ Sbjct: 1070 AGRHGNKGIVSNIVPEVDMPYLPSGQPVDIVLNPLGVPSRMNIGQILESHLGLVGYRLGE 1129 Query: 1151 KIKSLINDYKANGDISPLRSFLEKVIGTGSH---TEKISDYDDDSVLRVAEQWKSGVPVS 1207 +I + K + I LR + ++ + + D+ +L A+ W +GV + Sbjct: 1130 QINQI-FQEKKSEWIKELRVKMIEIASVSKFMSAKKTLGKMSDEQLLEYAKDWANGVKFA 1188 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TP+F+G + + + MA +D G++ LYDG TG V VG +YMLKL+H+V +KV Sbjct: 1189 TPIFEGVKVDELMKLFEMAKVDMDGKTELYDGRTGSKIKERVNVGCMYMLKLHHLVDEKV 1248 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGAA+ L+EMLT+KSDDV GR Sbjct: 1249 HARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLTVKSDDVEGRLS 1308 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNS 1371 Y+++ G + ETG PE+F VL E+++L L +++ + N Sbjct: 1309 AYKALTRGENVPETGIPETFFVLTNELKSLALDVEIYDEDENNE 1352 >gi|152991727|ref|YP_001357448.1| DNA-directed RNA polymerase subunit beta [Sulfurovum sp. NBC37-1] gi|182676575|sp|A6Q6I2|RPOB_SULNB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|151423588|dbj|BAF71091.1| DNA-directed RNA polymerase, beta subunit [Sulfurovum sp. NBC37-1] Length = 1385 Score = 1338 bits (3464), Expect = 0.0, Method: Composition-based stats. Identities = 594/1387 (42%), Positives = 894/1387 (64%), Gaps = 34/1387 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K P I+IP+L+++Q+ SY++FLM+ +R + L+ F+S FPI Sbjct: 10 RLRVDFSKTPREIEIPNLLQLQQKSYENFLMLG--ERDRKHSTLERVFRSAFPIHDQQNR 67 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 L + + E PK+ V +C+ R LTY+V LK+ + L +++ DE TG K K+IKEQ++ Sbjct: 68 LTLTYKNSEIIKPKYTVRECMERGLTYSVSLKMNIALTIWNRDEKTGEKLDPKEIKEQAV 127 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ D+PLMT+ +FV+ G++R++V+QLHRSPG+ F ++ + KLLY+ +IIPD+G Sbjct: 128 FVRDIPLMTERTSFVVNGVERVIVNQLHRSPGVIFKEEES-TTAGHKLLYSAQIIPDRGS 186 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KDI++ RI++RRK+PVT AL E+I+ FYP S + + + Sbjct: 187 WLYFEYDAKDILYARINKRRKIPVTILFRALDYTKEDIVKLFYPTKEISIKDNRFLVKFD 246 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 +D + + D+D G ++ +GK+LT + L E G++++ + L ++A Sbjct: 247 PSDF--SGRAEYDVKDMD-GNVIVNAGKRLTKKKAQQLIENGLEWIEYPLEMLMERHLAT 303 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN--- 367 +++ E+GE+ + +DE L+++ I I I+ + + I N + D Sbjct: 304 AVIDQESGEVLYDVVAPLDETKLKKMIEQGIESIEIINDLAEGTDKSIINAFIADNESLR 363 Query: 368 --KDRKDAL-------LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 K ++ + IY+VMRPG+ T A+S LFFD ++YDL+ VGR+KMN Sbjct: 364 LLKQTEEIDDENVLSAIRIYKVMRPGEPVTPEAAKSFLRQLFFDPERYDLTEVGRMKMNH 423 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L LD P + ED+I +K L+ ++NG G IDD D+LGNRR+R++GE+L N+ G Sbjct: 424 KLGLDIPQYATVLTAEDLINTVKYLIKVKNGHGHIDDRDHLGNRRIRAIGELLGNELHNG 483 Query: 479 LLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++IK++++++ +D +MP DL+N+K + + + EFF S QLSQ + N LS +T Sbjct: 484 LVKMQKAIKDKMTTISGTLDELMPHDLVNSKMITNTILEFFSSGQLSQFMDQTNPLSEVT 543 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + RAG E+RDVHPTHYGRICP ET EG NIGL+++L ++++VN +G Sbjct: 544 HKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLATYSKVNEHG 603 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PY+ V D +VT+++VY++A +EE++ IA A++ +DE+G E+L+ R G L Sbjct: 604 FIEAPYKVVKDAQVTDEIVYITATQEEDKCIAPASTKVDENGKIVEDLIETRLNGNIELN 663 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 +++D ID SP + AA+LIPFLE+DD+NR LMG NMQRQAVPLLK +AP VGTGME Sbjct: 664 EAKRVDLIDISPLMISGSAAALIPFLEHDDANRALMGSNMQRQAVPLLKTDAPVVGTGME 723 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++V++ + A+ AKRAG VE+VDA I I + + +D Y L K R+NQNT Sbjct: 724 AIVSRDAWEAVKAKRAGKVEKVDAKNIYIMGEDE----TGVFIDHYPLEKNMRTNQNTTF 779 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q P+VK+GD + +IADG + D G+LA+G+N++VAFMPW+GYN+ED++++SE+++ E Sbjct: 780 TQTPIVKLGDVIEVGQVIADGANMDQGELAIGKNIMVAFMPWYGYNYEDAIIVSEKIIRE 839 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+H E EV AR+ K G EEITRDIPN+ E+ L ++DE GI+ +G V PG ILVG Sbjct: 840 DTFTSVHTYEKEVEARELKHGTEEITRDIPNIREDELLHLDESGIVQLGTYVKPGMILVG 899 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFGEKA V + SL P+ + G VVD+++F + G +K+ R+ Sbjct: 900 KVSPKGEIKPTPEERLLRAIFGEKAGHVVNKSLYCPASMEGVVVDIKVFTKKGYEKDARA 959 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS----GPKGFKKSTVLSSDL 1012 I E+ +L D D+ +++DR R+ L GQ G K +K + + + Sbjct: 960 IQAYEEEKAILDSDHHDQLLMIDREEILRIAHYLSGQELAKDVTIGDKEYKAGSKIDEET 1019 Query: 1013 ISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 I R + VQ E+LK + K L++ + K+ ++ D +P GV Sbjct: 1020 IKGVNRFALRGVVQSYSDDVQNEYEALKNYFLKQKKRLKNEHEEKLSILEKDDILPSGVT 1079 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+++DG PV+I+LNPLGVPSRM Sbjct: 1080 KLVKIYIATKRKLKVGDKMAGRHGNKGIVSNIVPEIDMPYMEDGRPVEIILNPLGVPSRM 1139 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTEKISDY 1188 N+GQI E HLG + LG++I+ + D K I LR+ + ++ + E +S Sbjct: 1140 NIGQILEVHLGLVGMRLGEQIQEM-FDNKTADFIKELRAKMIEIADVAKLMNAKEVLSQM 1198 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 D+ +L W GV + PVF+G ++ + + +A ++ G+ LYDG TGE Sbjct: 1199 SDEELLAYGRDWSRGVKFAAPVFEGTNQTEFDKLFELAKIESDGKMTLYDGKTGEKMIER 1258 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++AYGA+ Sbjct: 1259 VNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAS 1318 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 ++L+EMLTIKSDDV GR R Y ++ G +G PE+ VL KE+QALGL +L S+ Sbjct: 1319 HILKEMLTIKSDDVEGRARAYRALTKGESVPASGVPETMFVLTKELQALGLDAELYESKK 1378 Query: 1369 KNSAKME 1375 + ++ E Sbjct: 1379 EVESEDE 1385 >gi|315452940|ref|YP_004073210.1| bifunctional DNA-directed RNA polymerase beta' chain [Helicobacter felis ATCC 49179] gi|315131992|emb|CBY82620.1| bifunctional DNA-directed RNA polymerase beta' chain [Helicobacter felis ATCC 49179] Length = 2886 Score = 1338 bits (3463), Expect = 0.0, Method: Composition-based stats. Identities = 606/1406 (43%), Positives = 885/1406 (62%), Gaps = 46/1406 (3%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K + +++P+L+ +QK SY+ FL P G++ FKSVFPI Sbjct: 9 RLRADFTKMAQELEVPNLLLLQKNSYEAFL----HPKGGRESGIERVFKSVFPIHDTQNR 64 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130 LE+ E+ K+ V + + R +TY+VPLKI +RLI+++ D T + KDIKEQSI Sbjct: 65 ITLEYDGCEYGKSKYTVREAMERGITYSVPLKIKIRLILWEKDPKTEERLGPKDIKEQSI 124 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++ ++PLMT +F+I G++R+VV+QLHRSPG+ F +K S + KL+Y +IIPD+G Sbjct: 125 FIREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEKSTTSAN-KLIYTGQIIPDRGS 183 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W+ E+D+KD +HVRI++RRKV T ALG ++I+ FYP + G+ + P Sbjct: 184 WLYFEYDAKDTLHVRINKRRKVSATILFRALGYSKQDIIRIFYPLLKVRCVGEKYYIPF- 242 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 AD+ + L D D G ++ + KKL++ + L+ ++++ SD L Y+AE Sbjct: 243 -ADINLDQHFDFDLKD-DKGNVLVVANKKLSNKKARDLRASKIEWVEYPSDVLRNRYLAE 300 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD----- 365 ++N + GE+ +++ +++ LE+I + I + I ++ ++ + + + D Sbjct: 301 PVLNAQ-GEVLLDSLTLLETSKLEKIQEAGISEFVIANDLALGHDVALIQSFLGDADALR 359 Query: 366 ----KNKDRKD---ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 K + A + IY+VMRPGD T VA++ LFFD ++YDL+ VGR+KMN Sbjct: 360 LLRQSEKIEDESALAAIRIYKVMRPGDPVTPDVAKAYVQQLFFDPERYDLTMVGRMKMNH 419 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L + PD V + EDIIA +K L+ ++NG+G IDD D+LGNRR+R+VGE+L N+ G Sbjct: 420 KLQVKVPDYVTVLTHEDIIATMKYLIKIKNGQGQIDDRDHLGNRRIRAVGELLANELHEG 479 Query: 479 LLRMERSIKERISSVDI--DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 L++M+++IK+++S+++ +S+MP DL+N+K + S + EFF S QLSQ + N LS +T Sbjct: 480 LMKMQKTIKDKLSTMNNALESLMPHDLVNSKTITSTILEFFMSGQLSQFMDQTNLLSEVT 539 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RR+SALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN G Sbjct: 540 HKRRISALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLG 599 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PY+KV +GKV+ +VVYL+A++EE + IA A++ +D G ++ + R +GE ++ Sbjct: 600 FIEAPYKKVINGKVSEEVVYLTAIQEEGQVIAPASTRIDAQGYIQDDFLETRVSGEIVMR 659 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 ++K+ +D S + +V +AASLIPFLE+DD+NR LMG NMQRQAVPLLKAE P VGTG+E Sbjct: 660 EKDKVTLMDLSSRMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLKAETPIVGTGIE 719 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 S++A+ S ++ A R+GIVE+VD+ I I + +D Y L K R+NQNTC Sbjct: 720 SIIARDSWGSVKATRSGIVEKVDSKNIYILGEGE-----QTYIDAYLLQKNLRTNQNTCF 774 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQ P+VKVGD V+ IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SE++ + Sbjct: 775 NQTPIVKVGDRVQAGQIIADGPSMDSGELALGKNIRVAFMPWNGYNFEDAIVVSEKITKD 834 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTS+HI E EV AR+ K G EE T DIP+V EE + ++D GI+ +G VN G ILVG Sbjct: 835 DVFTSVHIYEKEVEARELKHGIEEFTADIPDVKEEEVAHLDSGGIVKIGTYVNAGMILVG 894 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K++PKGE TPEE+LLRAIFG+KA V + SL P + G V+ V I + G +K+ R+ Sbjct: 895 KVSPKGEMKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGVVIGVHILTKKGYEKDARA 954 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS----GPKGFKKSTVLSSDL 1012 +S E+ L + D +L+R ++ + + + K + + D+ Sbjct: 955 VSAYEEEKATLDIEHFDRLTMLNREELLQISALFSKEPLEESTTLNDITYPKGSKIPKDV 1014 Query: 1013 ISEYPRSQWWQFAVQDEK-VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + E R A + K VQ E +K + K IL + K+ ++ D +P GV+ Sbjct: 1015 VMEINRFGLASLAKKYRKAVQDQFEHIKTNFLEQKKILGQEHEEKLSILEKDDILPNGVI 1074 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 + VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPSRM Sbjct: 1075 KKVKIYIATKRKLKVGDKMAGRHGNKGIVSNIVPIADMPYTADGEPVDIVLNPLGVPSRM 1134 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDY--- 1188 N+GQI E HLG LG +I +L+ + + LE + ++ Sbjct: 1135 NIGQILEVHLGLVGKQLGGQIDALLKSHTQDMLAKLRAKMLEIAHVVNIQNDSLAKMLEN 1194 Query: 1189 -DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 D+++L A W SGV + PVF+G EE + +A +D G+ LYDG TGE Sbjct: 1195 CPDETLLAYARDWSSGVKFAIPVFEGISEEQFKRLFELAQIDPDGKVELYDGRTGEKMKE 1254 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 V VGY+YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW +++YGA Sbjct: 1255 RVNVGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALESYGA 1314 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 A+ L+EMLTIKSDD+ GR Y+++ G E+ PE+F VL KE+Q+LGL + + Sbjct: 1315 AHTLKEMLTIKSDDIKGRENAYKAVARGEHVGESEIPETFYVLTKELQSLGLEVSIFGDE 1374 Query: 1368 TKN--------SAKMEEIPDFNKCEL 1385 + E DF+ +L Sbjct: 1375 VDEFGAPKPIAIKEDERPKDFSSFQL 1400 Score = 39.3 bits (90), Expect = 4.3, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + EDI++ T EI + +IDE+ ++I + I+ + I Sbjct: 2192 GSELIEPLEERIFGRVLVEDIIDPLTNEILLNTDTLIDEEKAKKIVEAGIKSVTI 2246 >gi|15612186|ref|NP_223838.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter pylori J99] gi|41017814|sp|Q9ZK23|RPOBC_HELPJ RecName: Full=Bifunctional DNA-directed RNA polymerase subunit beta-beta'; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|4155718|gb|AAD06699.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99] Length = 2890 Score = 1337 bits (3459), Expect = 0.0, Method: Composition-based stats. Identities = 600/1409 (42%), Positives = 887/1409 (62%), Gaps = 48/1409 (3%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFL----YSKDGKESGIEKVFKSIFPIQDEH 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQ 128 LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQ Sbjct: 64 NRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQ 123 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 SI++ ++PLMT+ +F+I G++R+VV+QL+RSPG+ F ++ S KL+Y +IIPD+ Sbjct: 124 SIFIREIPLMTERTSFIINGVERVVVNQLYRSPGVIFKEEESST-SSNKLIYTGQIIPDR 182 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P Sbjct: 183 GSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIP 242 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++ Sbjct: 243 FASLD--ANQRMEFDLKDPQ-GKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHL 299 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 AE + E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D Sbjct: 300 AEPV--MVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFSADHES 357 Query: 369 ----------DRKDAL--LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D ++AL + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KM Sbjct: 358 LKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKM 417 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ Sbjct: 418 NHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELH 477 Query: 477 LGLLRMERSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL++M+++IK++++++ DS+MP DL+N+K + S + EFF QLSQ + N LS Sbjct: 478 SGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSE 537 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG+GG+ + R G E RDVHPT+YG+ P ET EG NIGL+++L++F RVN Sbjct: 538 VTHKRRLSALGEGGLVKDRVGFEARDVHPTYYGQFGPIETPEGQNIGLINTLSTFTRVND 597 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 GFIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE + Sbjct: 598 LGFIEAPYKKVVDGKVAGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIV 657 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L + K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG Sbjct: 658 LNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTG 717 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E ++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT Sbjct: 718 IEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNT 773 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ Sbjct: 774 SFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERIT 833 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +DVFTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G IL Sbjct: 834 KDDVFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMIL 893 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ Sbjct: 894 VGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDA 953 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSS 1010 R +S E+ L + D +L+R R+ +L + K +K+ + Sbjct: 954 RVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPK 1013 Query: 1011 DLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + I+ R + ++VQ + E K + K +L + + K+ ++ D +P G Sbjct: 1014 EEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNG 1073 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPS Sbjct: 1074 VIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPS 1133 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI---- 1185 RMN+GQI E HLG GK+I S++ D K LR+ + ++ + + + Sbjct: 1134 RMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAINEKDPLTIHV 1192 Query: 1186 -SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 + D+ +L A+ W GV ++ PVF+G +E + +A + G+ LYDG TGE Sbjct: 1193 LENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++A Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q+L L I++ Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIF 1372 Query: 1365 NSRTKNSA-----KMEEIP---DFNKCEL 1385 ++E DF+ +L Sbjct: 1373 GDDVDEDGAPRPIMIKEDDRPKDFSSFQL 1401 Score = 39.3 bits (90), Expect = 5.6, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2193 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247 >gi|260063557|ref|YP_003196637.1| DNA-directed RNA polymerase subunit beta [Robiginitalea biformata HTCC2501] gi|88783001|gb|EAR14175.1| DNA-directed RNA polymerase beta subunit [Robiginitalea biformata HTCC2501] Length = 1269 Score = 1336 bits (3458), Expect = 0.0, Method: Composition-based stats. Identities = 588/1369 (42%), Positives = 817/1369 (59%), Gaps = 116/1369 (8%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R F I + PD +++Q S+ F + D+R NEGL F FPIT Sbjct: 4 KQTERISFASAKNIPEYPDFLDIQIQSFQDFFQLETKSDQRANEGLYNTFMENFPITDTR 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q Sbjct: 64 NQFVLEFLDYFIDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QD 118 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +Y+G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ R+IP +G Sbjct: 119 VYLGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKG 175 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ D +++ IDR++K+PVT+ A+G + + +IL F Sbjct: 176 SWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLSEEVKVSKTGLKKV 235 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L G+KL + +L + E V Sbjct: 236 L---------------------------GRKLAARVLNTWHEDFVDEDT----------- 257 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKN 367 ++V+ E EI ++ V++++ +++I ++++ I + ++ ++ A I NTL D Sbjct: 258 -GEVVSIERNEIVLDRDTVLEKEHIDQIIETDVKTILLHKENNAQSDYAIIHNTLQKDPT 316 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L LD D Sbjct: 317 NSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLGLDIGMD 376 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 + + KEDII IIK L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ Sbjct: 377 KQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSAQFGVGLARMARTIR 436 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG G Sbjct: 437 ERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPG 496 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL+ FA+VN+ GF+ETPYRKV + Sbjct: 497 GLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVFAKVNSMGFLETPYRKVEE 556 Query: 608 GKV-TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 GKV T + +LSA EEE + IAQAN L +DG+ E V R + +V ++I++ D Sbjct: 557 GKVDTANYTFLSAEEEEGKKIAQANIPLKKDGAIDAEKVIARLEADYPVVDPKEINYTDV 616 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLLK E+P VGTG+E VA S Sbjct: 617 APNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLKPESPIVGTGLERQVATDSRVL 676 Query: 727 IVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 I A+ G+VE VD+ RI I+ E L Y L+KF+++NQ T +N +P+V+ Sbjct: 677 INAEGDGVVESVDSKRITIKYGRTDEERLVSFDEDSKTYELVKFRKTNQGTSINLKPIVR 736 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 G++V++ ++ +G +T+ G+LALG+N+ VAFMPW GYNFED+++ISE++V ED+FTSIH Sbjct: 737 KGEKVKKGQVLCEGYATESGELALGQNLKVAFMPWKGYNFEDAIVISEKVVREDIFTSIH 796 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 I+E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKGE Sbjct: 797 IDEYALEVRDTKLGAEELTNDIPNVSEEATKDLDEYGMIRIGAEVKPGDILIGKITPKGE 856 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 S TPEEKLLRAIFG+KA DV+D SL+ P ++G V+D ++F+R K++R S ++E Sbjct: 857 SDPTPEEKLLRAIFGDKAGDVKDASLKAPPSLNGVVIDKKLFSR--SIKDKRKRSEDKEA 914 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPR 1018 I L + + + L + +L +++ G+ + G + K + +++ Sbjct: 915 IAKLELEYETKFEQLKDVLVEKLFQLVNGKTSQGVMNDLGEEVLPKGKKYTLKMLNAVDD 974 Query: 1019 SQWW--QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 D K V L Y+ + L+ + I GD++P G++++ KV Sbjct: 975 FAHLVGGSWTTDSKTNDLVADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKV 1034 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 ++A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI Sbjct: 1035 YIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQI 1094 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 +ET LGWA LGKK + I D +I+ L E Sbjct: 1095 YETVLGWAGQKLGKKFATPIFDGATLDEINELTDKGEI---------------------- 1132 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 P F G + LYDG TGE F +P TVG IYM Sbjct: 1133 ------------PRF--------------------GHTYLYDGGTGERFHQPATVGVIYM 1160 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT Sbjct: 1161 LKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASATLREILT 1220 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 +KSDDV+GR + YESIV G E G PESFNVL+ E++ LGL I LE Sbjct: 1221 VKSDDVIGRAKTYESIVKGESMPEPGLPESFNVLMHELKGLGLDIRLEE 1269 >gi|116624533|ref|YP_826689.1| DNA-directed RNA polymerase subunit beta [Candidatus Solibacter usitatus Ellin6076] gi|116227695|gb|ABJ86404.1| DNA-directed RNA polymerase, beta subunit [Candidatus Solibacter usitatus Ellin6076] Length = 1392 Score = 1336 bits (3457), Expect = 0.0, Method: Composition-based stats. Identities = 639/1343 (47%), Positives = 871/1343 (64%), Gaps = 121/1343 (9%) Query: 85 KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTF 144 K+D+ +C R +TYA PLK+T+RL V+ D T KS++DIKEQ ++ G++PLMT +GTF Sbjct: 104 KYDMQECQERGMTYAAPLKVTIRLTVYSKDPETQKKSVRDIKEQEVFFGEIPLMTDNGTF 163 Query: 145 VIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHV 204 +I G +R++VSQLHRSPG+ F+ + GK IIP +G W++ E+D+K+I++V Sbjct: 164 IINGTERVIVSQLHRSPGVFFERVPAQGYFLGK------IIPYRGSWVEFEYDNKNILYV 217 Query: 205 RIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 RIDR+RK + FL ALG+ ++E IL FY R + + + G K+S + Sbjct: 218 RIDRKRKFYGSVFLRALGLKTDEQILRAFYRVSKMEIRDKK--IYWNVDEGLTGLKLSHA 275 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 + +G+ V+ GKK+T+ L K L++ ++ + + + L G +V D+V+ TGE+ I+ Sbjct: 276 ITT-KSGDTVVGQGKKITASLFKELQKAKIEKVEVAPNDLEGAHVVADVVDMTTGEVMID 334 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 A + + ++ + I + I + + + I T+ D K + +AL++IYR +RP Sbjct: 335 ANSELTTTVMSKLIEAGITEFEIFFPERDDVGTVIAATIRKDAVKTQNEALIEIYRKLRP 394 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP---DDVRHIRKEDIIAII 440 GD T A +F +FFD KYD S VGR+K N++L + D R + +D + I Sbjct: 395 GDPPTLDTATQLFQGMFFDPRKYDFSRVGRMKFNIKLYDRSDATALDKRTLDSDDFKSTI 454 Query: 441 KILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSV-DIDSVM 499 + L+ LR G G +DDID+LGNRRVR+VGE+L+NQ+R+GL+RMER+IKE++S ++ + M Sbjct: 455 RYLLKLRKGIGAVDDIDHLGNRRVRAVGELLENQFRIGLVRMERAIKEKMSVYQEMSTAM 514 Query: 500 PQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMR 559 P DL+NAKPV++A+ EFF SSQLSQ + N LS ITH RRLSALG GG++R RAG E+R Sbjct: 515 PHDLVNAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRERAGFEVR 574 Query: 560 DVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV----- 614 DVHPTHYGRICP ET EG NIGL+SSL+ FAR+N YGFIE+PYRKV G V ++V Sbjct: 575 DVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRKVIKGAVVDEVKVLNP 634 Query: 615 ------------------------------------VYLSAMEEENRYIAQANSSLDEDG 638 YLSA EE+ IAQAN LDE G Sbjct: 635 GDTDYKVGDIVRRGDMDEANRKLGGKKQAAEFEAHCEYLSAWEEDKWTIAQANVELDEKG 694 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 +L R AG +L P+E+I++ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQR Sbjct: 695 RIVPDLSNARQAGNFVLKPKEEIEYIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQR 754 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV---EGDLDPS 755 QAVPLL+A+AP+VGTGME V A+ SGA ++ KRAG+V+ VD+ RI++R Sbjct: 755 QAVPLLRADAPYVGTGMEMVTARDSGAVVLNKRAGVVDSVDSERIIVRVEGAAHEGQLSR 814 Query: 756 TSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAF 815 G DIY+L KF+RSNQNTC+NQ+P+V+VG V + ++ADGP TDLG+LALGRN+LVAF Sbjct: 815 EVGADIYQLTKFKRSNQNTCINQKPIVRVGQRVPKGAVLADGPCTDLGELALGRNVLVAF 874 Query: 816 MPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKN 875 MPW GYNFED++L+SE++V ED +TSIHIEEFE+ ARDTKLGPEEITRDIPN+++ L+N Sbjct: 875 MPWRGYNFEDAILVSEKLVKEDYYTSIHIEEFEIEARDTKLGPEEITRDIPNIADSFLRN 934 Query: 876 IDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGV 935 +DE GII +GA V PGDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D SL P G+ Sbjct: 935 LDESGIIRIGATVKPGDILVGKVTPKGETQLTPEEKLLRAIFGEKAGDVKDASLYCPPGI 994 Query: 936 SGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNA 995 GT+VD +IF+R G +K+ERS ++E QI+ L R+ DE IL RL +L G+ Sbjct: 995 EGTIVDCKIFSRKGQEKDERSKAIEESQIQRLQRNLQDEIRILTDERAKRLGTLLDGKKL 1054 Query: 996 VSGPKGFK-------KSTVLSSDLISEYPRSQWWQFAV--QDEKVQRNVESLKVQYETSK 1046 ++ K K T L+ +LI + + + +D ++ ++ ++ Sbjct: 1055 LADLHDEKTNKRLLSKDTELTRELIEKMKSRDLKRMRLANKDPRLNEQIDEIEEMTSRQI 1114 Query: 1047 SILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPC 1106 ++LE KI K++ GD++PPGV+++VKV++AMKR + GDKMAGRHGNKG+++RILP Sbjct: 1115 AVLEKITDEKIAKLRKGDELPPGVIKLVKVYIAMKRKLSVGDKMAGRHGNKGVIARILPE 1174 Query: 1107 EDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDIS 1166 EDMP+L DGTPV+IVLNPLGVPSRMNVGQI ETHLGWA LG + + + D +I Sbjct: 1175 EDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAKALGVQFATPVFDGATEREIK 1234 Query: 1167 PLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA 1226 + T +FD Sbjct: 1235 KNLTAAGLPTSGK----------------------------TALFD-------------- 1252 Query: 1227 DLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGK 1286 G+TG F++PVTVGYIYMLKL+H+V DK++ARS G YSL+TQQPLGGK Sbjct: 1253 ------------GMTGTQFEQPVTVGYIYMLKLSHLVDDKIHARSIGPYSLITQQPLGGK 1300 Query: 1287 SNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPES 1346 + GGQR GEMEVW ++AYGAAY+LQE+LT KSDDV GR ++YE+IV G E G PES Sbjct: 1301 AQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRAKIYEAIVKGEAAIEPGVPES 1360 Query: 1347 FNVLVKEMQALGLSIDLENSRTK 1369 FNVL++E+Q+L L ++L + Sbjct: 1361 FNVLIRELQSLCLDVELMKKPRE 1383 Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats. Identities = 20/40 (50%), Positives = 26/40 (65%) Query: 43 MNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFD 82 M++ P+ER + GLQ F SVFPI+ F G + LEFV Y Sbjct: 1 MDLLPNEREDIGLQTVFNSVFPISDFRGVSDLEFVDYSIG 40 >gi|322379978|ref|ZP_08054251.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter suis HS5] gi|321147595|gb|EFX42222.1| DNA-directed RNA polymerase subunit beta/beta' [Helicobacter suis HS5] Length = 1868 Score = 1335 bits (3456), Expect = 0.0, Method: Composition-based stats. Identities = 611/1419 (43%), Positives = 895/1419 (63%), Gaps = 51/1419 (3%) Query: 7 FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPIT 66 R+R F + P+ + +P+L+ +QK SY+ FL + G++ FKSVFPI Sbjct: 2 KTLKNRLRADFTRVPQELQVPNLLFLQKESYEAFL----YAKDGKESGIERVFKSVFPIH 57 Query: 67 AFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDI 125 LE+ YE+ PK+ V + + R +TY+V LKI +RLI+++ D TG K KDI Sbjct: 58 DSQNRITLEYGGYEYGEPKYTVREAMERGITYSVYLKIKIRLILWEKDPKTGEKLGPKDI 117 Query: 126 KEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRII 185 KEQSI++ ++PLMT +F+I G++R+VV+QLHRSPG+ F +K + + KL+YA +II Sbjct: 118 KEQSIFIREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEKS-TTSTNKLIYAGQII 176 Query: 186 PDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYP--KIVYSQRGD 243 PD+G W+ E+D KDI+HVRI++RRKV T A+G ++I+ FYP K+ + Sbjct: 177 PDRGSWLYFEYDVKDILHVRINKRRKVSATILFRAIGYSKQDIIKIFYPLLKVRHRVIKG 236 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + ++V +++ L D G ++ + KK+T+ K ++E GV+++ + L Sbjct: 237 ESKYYIPFESIIVDSRLDFDLKDEK-GRVLLAASKKVTARKAKEIRESGVEWVEYPTKIL 295 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 Y+AE I++ + ++A ++++ L++I + I I ++ ++A I + Sbjct: 296 LNRYLAEPIMDTNQS-VLLDALTLLEQPKLDKIREAGIDAFVIANDLALGHDASIIRSFT 354 Query: 364 TDKNKDRKD-----------------ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKY 406 +D R + A + IY+VMRPGD T VA++ LFFD ++Y Sbjct: 355 SDAESLRNESLKLLKQSEKIEDESALAAIRIYKVMRPGDPVTTEVAKTYVQQLFFDPERY 414 Query: 407 DLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 DL+ VGR+KMN +L+L P+ V + EDII +K L+ ++NG+G IDD D+LGNRR+R+ Sbjct: 415 DLTMVGRMKMNHKLHLKVPNYVTVLTHEDIIETVKYLIKIKNGQGRIDDRDHLGNRRIRA 474 Query: 467 VGEMLKNQYRLGLLRMERSIKERISSVDI--DSVMPQDLINAKPVVSAVCEFFCSSQLSQ 524 VGE+L N+ GL++M+++IK+++++++ DS+MP DL+N+K + S + EFF S QLSQ Sbjct: 475 VGELLSNELHEGLMKMQKTIKDKLTTMNNALDSLMPHDLVNSKMITSTILEFFMSGQLSQ 534 Query: 525 LEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + N LS +TH RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL++ Sbjct: 535 FMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLIN 594 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 +L++F RVN GFIE PY+KV +G V + YL+A++EE IA A++ +D G E+L Sbjct: 595 TLSTFTRVNDLGFIEAPYKKVVEGHVGEQIEYLTAIQEEGHVIAPASTVVDSKGYIQEDL 654 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLL 704 V R GE +L + K+ +D S + +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL Sbjct: 655 VETRVGGEIVLNEKHKVTLMDLSSRILVGVAASLIPFLEHDDANRALMGTNMQRQAVPLL 714 Query: 705 KAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRL 764 ++EAP VGTG+ESV+A+ S +I A+R G+V++VDA I I + + Y L Sbjct: 715 RSEAPIVGTGIESVIARDSWGSIKAERKGVVDEVDAGNIYIVEKDPQK---GPHITSYLL 771 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 K R+NQNTC NQ P+VKVGD V IIADGPS D G+LALG+N+ VAFMPW+GYNFE Sbjct: 772 QKNLRTNQNTCFNQVPIVKVGDVVEEGQIIADGPSMDKGELALGKNVRVAFMPWNGYNFE 831 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 D++++SE+++ EDVFTS+HI E E+ AR+ K G EE T DIP+V EE + ++D GI+ + Sbjct: 832 DAIVVSEKIIKEDVFTSVHIYEKEIEARELKHGIEEFTADIPDVKEEEVAHLDSGGIVKI 891 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 G V PG ILVGK++PKGE TPEE+LLRAIFG+KA V + SL P + GTV+ V+I Sbjct: 892 GTYVAPGMILVGKVSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIGVKI 951 Query: 945 FNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ----NAVSGPK 1000 F + G +++ R+ + E+ +L D ++D+ ++ +I + AV Sbjct: 952 FTKKGYERDTRATNAYEEEKWVLDDRHDKHFKMIDKEELLQISDIFSQEPLEEEAVFNEI 1011 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQ-DEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 + K + + ++I R A + ++VQ E +K+ K +L + K+ Sbjct: 1012 TYPKGSKIPREVIEGSNRFGLISLAKKYSKEVQDRFEQIKINILEQKKLLGQGHEKKLSI 1071 Query: 1060 IQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVD 1119 ++ D +P GV+++VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVD Sbjct: 1072 LEKDDILPNGVIKLVKIYIATKRKLKVGDKMAGRHGNKGIVSNIVPIADMPYTADGEPVD 1131 Query: 1120 IVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--- 1176 IVLNPLGVPSRMN+GQI E HLG LGK+IK+L+ D + I+ LRS + ++ Sbjct: 1132 IVLNPLGVPSRMNIGQILEVHLGLVGKELGKQIKALL-DSQTKDFIAKLRSKMLEIARVV 1190 Query: 1177 --GTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 + + + D +L A W SGV + PVF+G EE + ++A +D G++ Sbjct: 1191 NVDNQTLAQILESCSDTDLLSYARDWSSGVKFAIPVFEGISEEQFMELFKLAKIDLDGKT 1250 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 LYDG TGE V VGY+YMLKL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR Sbjct: 1251 ELYDGRTGEKMKERVNVGYMYMLKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRF 1310 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGAA+ L+EMLT+KSDD+ GR Y +I G E+ PE+F VL KE+ Sbjct: 1311 GEMEVWALEAYGAAHTLKEMLTVKSDDIKGRENAYRAIARGEHVGESEIPETFYVLTKEL 1370 Query: 1355 QALGLSIDLENSRTKN------SAKMEEIP--DFNKCEL 1385 Q+L L +++ N E+ DFN +L Sbjct: 1371 QSLALDVNIFNEEVDEFGMPKPIVIKEDDRPKDFNSFQL 1409 >gi|268316668|ref|YP_003290387.1| DNA-directed RNA polymerase, beta subunit [Rhodothermus marinus DSM 4252] gi|262334202|gb|ACY47999.1| DNA-directed RNA polymerase, beta subunit [Rhodothermus marinus DSM 4252] Length = 1279 Score = 1335 bits (3456), Expect = 0.0, Method: Composition-based stats. Identities = 616/1368 (45%), Positives = 839/1368 (61%), Gaps = 118/1368 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + ++D PDL+E+Q ++ F+ ++ P+ER ++GLQA FK FPIT + Sbjct: 13 RISFARTKTVLDYPDLLEIQLQAFKEFVQDDVPPEEREDKGLQAVFKEHFPITDSRERYI 72 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y D PK +++CL + LTY+VPLK LRL + + ++ A + +Y+G Sbjct: 73 LEFLYYALDTPKHTIEECLAQGLTYSVPLKAKLRLSILEDEDEEEAGEAIEQ---EVYLG 129 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +LP MT+ GTF+I G +R++VSQLHRSPG+ F +G LY+ R+IP +G W++ Sbjct: 130 NLPYMTERGTFIINGAERVIVSQLHRSPGVFFSQS---VHPNGTELYSARVIPLRGSWLE 186 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWCFPLSAA 252 D I+ IDRR+K+PVT+ L ALG S+E I+ F Sbjct: 187 FSTDVAGILWAYIDRRKKIPVTTLLRALGYSSDEDIIQLFELAEEADISTKKAFKNYIGR 246 Query: 253 DLMVGAKVSS--SLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 L + +VD DTGE + E ++ Sbjct: 247 KLASSITLERIIEIVDEDTGEVLEEKRER------------------------------- 275 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDI----PILYVDSVNNNAYIRNTLVTDK 366 E+ + A + E + + + I + + + + + NTL D Sbjct: 276 --------EVLLPAEHELQEGDYDRLKEAGITKLYLLKEDEDEEEALDKSLLLNTLRKDP 327 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 +AL IY +R + A ++ + LFF+ +YDL VGR ++N RL +TP Sbjct: 328 THSEAEALEYIYFQLRGTETPDLETARALLDRLFFNEKRYDLGAVGRYRLNKRLRQNTPM 387 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 DV + KEDI+AI++ LV L+NG+ T+DDID+LGNRRVR+V E L Q+ +GL RM R+I Sbjct: 388 DVLTLTKEDIVAIVRELVLLQNGRSTVDDIDHLGNRRVRTVAEQLAAQFSVGLARMARTI 447 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 KER++ D +S PQDL+NA+ + S + FF ++QLSQ + N L+ +TH RR+SALG Sbjct: 448 KERMNLRDAESFTPQDLVNARTIASVINTFFGTNQLSQFMDQTNPLAELTHKRRVSALGP 507 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+ SLT AR+N +GFIETPYR V Sbjct: 508 GGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLICSLTVHARINEFGFIETPYRVVR 567 Query: 607 DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 +GKVTN++VYL+A EE+N IAQAN+ +DE+G+F E V CR G+ L+ E+I ++D Sbjct: 568 NGKVTNEIVYLTAEEEDNAVIAQANAPIDEEGNFLNEFVKCRYRGDFPLMRPEQIQYMDV 627 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 +P Q+VS +ASLIPFLE+DD+NR LMG NMQRQAVPLL+ EAP VGTGME+ VA+ S A Sbjct: 628 APNQIVSPSASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGMEARVARDSRAL 687 Query: 727 IVAKRAGIVEQVDAIRIVIRSVEGDLD---PSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 +VA+ G+VE VDA RIVIR + D V YRL+KF+R+NQ+TC+N RP+VK Sbjct: 688 LVAEGPGVVEYVDAERIVIRYDQDPEDAEVSFEEPVKEYRLIKFRRTNQDTCINMRPIVK 747 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 VG V + ++ DG +T+ G+LALG+N+LVAFMPW GYNFED+++ISER+V+EDVFTS+H Sbjct: 748 VGQRVEKGTVLCDGFATEKGELALGKNVLVAFMPWRGYNFEDAIVISERLVAEDVFTSVH 807 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 IEEFE RDTK G EE+TR+IPNVSEE K++DE GII VGAEV GDILVGK+TPKGE Sbjct: 808 IEEFECQVRDTKRGQEELTREIPNVSEEATKDLDERGIIRVGAEVKAGDILVGKVTPKGE 867 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 + TPEEKLLRAIFG+KA DV+D SL+ P G+ G V+D ++F+R + + S E+++ Sbjct: 868 TEPTPEEKLLRAIFGDKAGDVKDASLKAPPGMKGVVIDTKLFSRRKL--DPASKKREQQR 925 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPR 1018 + + + LDR + + ++ GQ + G + + + + Sbjct: 926 LAEIDEQLQRDLAELDRRFWEKFFNLVEGQVSAGVETREGDIVLPEGMPFTREAFEKISP 985 Query: 1019 SQWWQF--AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 + QDE V R V+ L YE + K +IQ GD++PPG++++ KV Sbjct: 986 LRLNPMFPFTQDETVNRKVQKLLRNYEQVHRRITGEAKRLKHQIQMGDELPPGIVQLAKV 1045 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 ++A KR IQ GDKMAGRHGNKG+V++I+P EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI Sbjct: 1046 YIARKRKIQVGDKMAGRHGNKGVVAKIVPVEDMPFLEDGTPVDIVLNPLGVPSRMNLGQI 1105 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 +ET LGWA LG+K S + D DI L Sbjct: 1106 YETLLGWAGKVLGRKFASPVFDGATLDDIKALLR-------------------------- 1139 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 ++G+P E L G++ GEP D TVGYIYM Sbjct: 1140 ----EAGLP-----------EDGRVQL------YDGRT-------GEPLDEKTTVGYIYM 1171 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 +KLNH+V DK++ARS G YSL+TQQPLGGK+ GGQRLGEMEVW + AYGAA+ LQEMLT Sbjct: 1172 MKLNHLVEDKIHARSIGPYSLITQQPLGGKAQFGGQRLGEMEVWALYAYGAAHTLQEMLT 1231 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDV GR++ YE+IV G + E G PESFNVLV+E+Q LGL + L+ Sbjct: 1232 YKSDDVQGRSKAYEAIVKGENLPEPGIPESFNVLVRELQGLGLEVRLD 1279 >gi|158563891|sp|Q01VB1|RPOB_SOLUE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1432 Score = 1334 bits (3452), Expect = 0.0, Method: Composition-based stats. Identities = 639/1343 (47%), Positives = 871/1343 (64%), Gaps = 121/1343 (9%) Query: 85 KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTF 144 K+D+ +C R +TYA PLK+T+RL V+ D T KS++DIKEQ ++ G++PLMT +GTF Sbjct: 144 KYDMQECQERGMTYAAPLKVTIRLTVYSKDPETQKKSVRDIKEQEVFFGEIPLMTDNGTF 203 Query: 145 VIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHV 204 +I G +R++VSQLHRSPG+ F+ + GK IIP +G W++ E+D+K+I++V Sbjct: 204 IINGTERVIVSQLHRSPGVFFERVPAQGYFLGK------IIPYRGSWVEFEYDNKNILYV 257 Query: 205 RIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 RIDR+RK + FL ALG+ ++E IL FY R + + + G K+S + Sbjct: 258 RIDRKRKFYGSVFLRALGLKTDEQILRAFYRVSKMEIRDKK--IYWNVDEGLTGLKLSHA 315 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 + +G+ V+ GKK+T+ L K L++ ++ + + + L G +V D+V+ TGE+ I+ Sbjct: 316 ITT-KSGDTVVGQGKKITASLFKELQKAKIEKVEVAPNDLEGAHVVADVVDMTTGEVMID 374 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 A + + ++ + I + I + + + I T+ D K + +AL++IYR +RP Sbjct: 375 ANSELTTTVMSKLIEAGITEFEIFFPERDDVGTVIAATIRKDAVKTQNEALIEIYRKLRP 434 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP---DDVRHIRKEDIIAII 440 GD T A +F +FFD KYD S VGR+K N++L + D R + +D + I Sbjct: 435 GDPPTLDTATQLFQGMFFDPRKYDFSRVGRMKFNIKLYDRSDATALDKRTLDSDDFKSTI 494 Query: 441 KILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSV-DIDSVM 499 + L+ LR G G +DDID+LGNRRVR+VGE+L+NQ+R+GL+RMER+IKE++S ++ + M Sbjct: 495 RYLLKLRKGIGAVDDIDHLGNRRVRAVGELLENQFRIGLVRMERAIKEKMSVYQEMSTAM 554 Query: 500 PQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMR 559 P DL+NAKPV++A+ EFF SSQLSQ + N LS ITH RRLSALG GG++R RAG E+R Sbjct: 555 PHDLVNAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRERAGFEVR 614 Query: 560 DVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV----- 614 DVHPTHYGRICP ET EG NIGL+SSL+ FAR+N YGFIE+PYRKV G V ++V Sbjct: 615 DVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRKVIKGAVVDEVKVLNP 674 Query: 615 ------------------------------------VYLSAMEEENRYIAQANSSLDEDG 638 YLSA EE+ IAQAN LDE G Sbjct: 675 GDTDYKVGDIVRRGDMDEANRKLGGKKQAAEFEAHCEYLSAWEEDKWTIAQANVELDEKG 734 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 +L R AG +L P+E+I++ID SPKQ+VS+AASLIPFLENDD+NR LMG NMQR Sbjct: 735 RIVPDLSNARQAGNFVLKPKEEIEYIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQR 794 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV---EGDLDPS 755 QAVPLL+A+AP+VGTGME V A+ SGA ++ KRAG+V+ VD+ RI++R Sbjct: 795 QAVPLLRADAPYVGTGMEMVTARDSGAVVLNKRAGVVDSVDSERIIVRVEGAAHEGQLSR 854 Query: 756 TSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAF 815 G DIY+L KF+RSNQNTC+NQ+P+V+VG V + ++ADGP TDLG+LALGRN+LVAF Sbjct: 855 EVGADIYQLTKFKRSNQNTCINQKPIVRVGQRVPKGAVLADGPCTDLGELALGRNVLVAF 914 Query: 816 MPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKN 875 MPW GYNFED++L+SE++V ED +TSIHIEEFE+ ARDTKLGPEEITRDIPN+++ L+N Sbjct: 915 MPWRGYNFEDAILVSEKLVKEDYYTSIHIEEFEIEARDTKLGPEEITRDIPNIADSFLRN 974 Query: 876 IDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGV 935 +DE GII +GA V PGDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D SL P G+ Sbjct: 975 LDESGIIRIGATVKPGDILVGKVTPKGETQLTPEEKLLRAIFGEKAGDVKDASLYCPPGI 1034 Query: 936 SGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNA 995 GT+VD +IF+R G +K+ERS ++E QI+ L R+ DE IL RL +L G+ Sbjct: 1035 EGTIVDCKIFSRKGQEKDERSKAIEESQIQRLQRNLQDEIRILTDERAKRLGTLLDGKKL 1094 Query: 996 VSGPKGFK-------KSTVLSSDLISEYPRSQWWQFAV--QDEKVQRNVESLKVQYETSK 1046 ++ K K T L+ +LI + + + +D ++ ++ ++ Sbjct: 1095 LADLHDEKTNKRLLSKDTELTRELIEKMKSRDLKRMRLANKDPRLNEQIDEIEEMTSRQI 1154 Query: 1047 SILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPC 1106 ++LE KI K++ GD++PPGV+++VKV++AMKR + GDKMAGRHGNKG+++RILP Sbjct: 1155 AVLEKITDEKIAKLRKGDELPPGVIKLVKVYIAMKRKLSVGDKMAGRHGNKGVIARILPE 1214 Query: 1107 EDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDIS 1166 EDMP+L DGTPV+IVLNPLGVPSRMNVGQI ETHLGWA LG + + + D +I Sbjct: 1215 EDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAKALGVQFATPVFDGATEREIK 1274 Query: 1167 PLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA 1226 + T +FD Sbjct: 1275 KNLTAAGLPTSGK----------------------------TALFD-------------- 1292 Query: 1227 DLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGK 1286 G+TG F++PVTVGYIYMLKL+H+V DK++ARS G YSL+TQQPLGGK Sbjct: 1293 ------------GMTGTQFEQPVTVGYIYMLKLSHLVDDKIHARSIGPYSLITQQPLGGK 1340 Query: 1287 SNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPES 1346 + GGQR GEMEVW ++AYGAAY+LQE+LT KSDDV GR ++YE+IV G E G PES Sbjct: 1341 AQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRAKIYEAIVKGEAAIEPGVPES 1400 Query: 1347 FNVLVKEMQALGLSIDLENSRTK 1369 FNVL++E+Q+L L ++L + Sbjct: 1401 FNVLIRELQSLCLDVELMKKPRE 1423 Score = 110 bits (276), Expect = 1e-21, Method: Composition-based stats. Identities = 36/70 (51%), Positives = 44/70 (62%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F K I IP+LIEVQK SY+ FL M++ P+ER + GLQ F SVFPI+ F G + Sbjct: 11 ERVDFSKIKTSIPIPNLIEVQKKSYERFLQMDLLPNEREDIGLQTVFNSVFPISDFRGVS 70 Query: 73 MLEFVSYEFD 82 LEFV Y Sbjct: 71 DLEFVDYSIG 80 >gi|325285440|ref|YP_004261230.1| DNA-directed RNA polymerase subunit beta [Cellulophaga lytica DSM 7489] gi|324320894|gb|ADY28359.1| DNA-directed RNA polymerase subunit beta [Cellulophaga lytica DSM 7489] Length = 1269 Score = 1334 bits (3452), Expect = 0.0, Method: Composition-based stats. Identities = 586/1369 (42%), Positives = 812/1369 (59%), Gaps = 116/1369 (8%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R F I D PD +++Q S+ F + DER +EGL F FPIT Sbjct: 4 KQTQRINFASAKNIPDYPDFLDIQIKSFQDFFQLETKSDERGDEGLYNTFLENFPITDTR 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q Sbjct: 64 NQFVLEFLDYFIDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QD 118 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +Y+G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ R+IP +G Sbjct: 119 VYLGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKG 175 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ D +++ IDR++K+PVT+ A+G + + +IL F Sbjct: 176 SWIEFATDINGVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLSEEIKVSNAGLKKV 235 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L G+KL + +L + E V Sbjct: 236 L---------------------------GRKLAARVLNTWHEDFVDEDT----------- 257 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKN 367 ++V+ E EI ++ V++++ + EI ++++ I + ++ ++ A I NTL D Sbjct: 258 -GEVVSIERNEIVLDRDTVLEKEHIAEIMEADVKTILLHKENNAQSDYAIIHNTLQKDPT 316 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L LD D Sbjct: 317 NSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLQLDIGMD 376 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 + + KEDII IIK L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ Sbjct: 377 KQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIR 436 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG G Sbjct: 437 ERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPG 496 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL+ +A+VN GF+ETPYRKV + Sbjct: 497 GLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAKVNPMGFLETPYRKVTN 556 Query: 608 GKV-TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 G V T + YLSA EEE I+QAN L EDG + V R G+ +V +I++ D Sbjct: 557 GVVDTEEYAYLSAEEEEGMKISQANIPLKEDGEIDVDKVIAREEGDFPVVDPAEINYTDV 616 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ E+P VGTG+E VA S Sbjct: 617 APNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPESPIVGTGLERQVASDSRVL 676 Query: 727 IVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 I A+ G+VE VD+ ++ I+ E L Y L+KF+++NQ T +N +P+V+ Sbjct: 677 INAEGDGVVEYVDSQKVTIKYDRTEEERLVSFEEDSKTYNLVKFRKTNQGTSINLKPIVE 736 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 GD+V++ ++ +G +T LG+LALGRNM VAFMPW GYNFED+++ISE++V ED+FTSIH Sbjct: 737 KGDKVKKGQVLCEGYATQLGELALGRNMKVAFMPWKGYNFEDAIVISEKVVREDIFTSIH 796 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 I+E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKGE Sbjct: 797 IDEYSLEVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGE 856 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 S TPEEKLLRAIFG+KA DV+D SL+ + G V+ ++F+R K++R+ +++ Sbjct: 857 SDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIGKKLFSR--SIKDKRTRVEDKDA 914 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPR 1018 I L + + + L + +L ++ G+ + G + K S +++ Sbjct: 915 INKLELEYEVKFQQLKDILVEKLFTLVNGKTSQGVLNDLGEEVLPKGKKYSMKMLNSVDD 974 Query: 1019 SQWW--QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 D+ + V L Y+ + L+ + I GD++PPG++++ KV Sbjct: 975 FAHLVGGSWTVDKDLNAMVADLIHNYKIKLNDLQGNLRRDKFTISVGDELPPGIMKLAKV 1034 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 +VA KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI Sbjct: 1035 YVAKKRKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIVLNPLGVPSRMNIGQI 1094 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 +ET LGWA + LGKK + I D I+ Sbjct: 1095 YETVLGWAGLKLGKKYATPIFDGATLEQINGYTD-------------------------- 1128 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 ++G+P G + LYDG TG+ FD+P TVG IYM Sbjct: 1129 ----EAGIP------------------------RFGHTYLYDGGTGKRFDQPATVGVIYM 1160 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT Sbjct: 1161 LKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASATLREILT 1220 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 +KSDDV+GR + YESIV G E G PESFNVL+ E++ LGL I LE Sbjct: 1221 VKSDDVIGRAKTYESIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE 1269 >gi|255530761|ref|YP_003091133.1| DNA-directed RNA polymerase subunit beta [Pedobacter heparinus DSM 2366] gi|255343745|gb|ACU03071.1| DNA-directed RNA polymerase, beta subunit [Pedobacter heparinus DSM 2366] Length = 1267 Score = 1333 bits (3449), Expect = 0.0, Method: Composition-based stats. Identities = 591/1369 (43%), Positives = 822/1369 (60%), Gaps = 119/1369 (8%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R F ++ IID PD ++VQ S+ F + D R EGL F FPIT Sbjct: 4 KVDQRVNFARSKHIIDYPDFLDVQLQSFREFFQIETTSDNRHTEGLFKVFAENFPITDSR 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEF+ Y DPP++D+ +C+ R LTY+VPLK L+L D + I Q Sbjct: 64 NIFVLEFLDYFIDPPRYDIPECIDRGLTYSVPLKAKLKLSCNDAEHEDFETII-----QD 118 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +Y+G +P MT GTFVI G +R++VSQLHRSPG+ F + +G LY+ R+IP +G Sbjct: 119 VYLGTIPYMTPKGTFVINGAERVIVSQLHRSPGVFFGQSR---HTNGTKLYSARVIPFKG 175 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ D ++++ IDR++K PVT+ L A+G DS+ +IL F Sbjct: 176 SWIEFATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFDLADEVKVSKSGLKKY 235 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + G+KL + +L+ E V Sbjct: 236 I---------------------------GRKLAARVLRKWVEDFVDEDT----------- 257 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVTDK 366 ++V+ + E+ ++ V+++ ++ I + ++ I + D + Y I NTL D Sbjct: 258 -GEVVSIDRNEVILDRDTVLEDDHIDMIIDAGVKTIILSKDDGASQADYTIIYNTLQKDT 316 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 + K+A+ +IYR +R + A + LFF +YDL VGR ++N +L +DTPD Sbjct: 317 SNSEKEAVENIYRALRNAEPPDEETARGIIERLFFSDKRYDLGDVGRYRINRKLKMDTPD 376 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 V+ + K DIIAI+K L+ L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I Sbjct: 377 HVKVLTKADIIAIVKYLIKLINSKEEVDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTI 436 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 +ER++ D + P DLINA+ + S + FF ++QLSQ + N L+ ITH RRLSALG Sbjct: 437 RERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGP 496 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG++R RAG E+RDVH THYGR+C ET EG NIGL+SSL A++N GFIETPY+KV Sbjct: 497 GGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKINNLGFIETPYKKVE 556 Query: 607 DGKVT--NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 +G V+ V+YLSA +E+ + IAQAN++ D+ G+FT V R G+ ++ EK+D + Sbjct: 557 NGIVSVDEPVIYLSAEDEDGKTIAQANAAYDDKGNFTTSRVKARYEGDFPVIEPEKLDLM 616 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D +P Q+ SIAASLIPFLE+DD+NR LMG NMQRQAVPLL+ EAP VGTG+E VA+ S Sbjct: 617 DVAPNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLEGRVARDSR 676 Query: 725 AAIVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 I A+ G+VE VDA I I+ L Y+L+KF+++NQNTC+N +P+ Sbjct: 677 TLINAEGDGVVEYVDANEITIKYVRNDSDRLVSFEGDSKTYKLIKFKKTNQNTCINLKPI 736 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK G +V + ++ +G +T+ G+LALGRN+ VAFMPW GYNFED+++ISER+V ED+FTS Sbjct: 737 VKKGQKVVKGQVLCEGYATENGELALGRNLKVAFMPWQGYNFEDAIVISERIVREDIFTS 796 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 +HIEEFE+ RDTK G EE+T DIPNVSEE K++DE GII +GAEV GDIL+GKITPK Sbjct: 797 LHIEEFELEVRDTKRGEEELTPDIPNVSEEATKDLDENGIIRIGAEVKEGDILIGKITPK 856 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GES +PEEKLLRAIFG+KA DV+D SL+ P + G V+D ++F+R + + + E+ Sbjct: 857 GESDPSPEEKLLRAIFGDKAGDVKDASLKTPPSIRGVVIDTKLFSRA----KKTTKAEEK 912 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-----KSTVLSSDLISEY 1016 IE L + D + L + +L +I+ G+ + +K K + +S+ Sbjct: 913 SAIEKLDKKYDLAVLNLKNELVDKLFQIVNGKTSQGVYNVYKELLFPKGAKFTQKSLSDL 972 Query: 1017 PRSQWWQF-AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075 + + D+ ++ L Y + +K I GD++P G++++ K Sbjct: 973 EYAHINPYKWTTDDDKNEQIKMLLHNYGIRVNEELGAYKRDKFAISVGDELPSGIVQMAK 1032 Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135 V+VA KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQ Sbjct: 1033 VYVAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNLGQ 1092 Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 I+ET L WA LG K + I D + ++ + Sbjct: 1093 IYETVLAWAGKELGVKFATPIFDGAKHDEVEDWIA------------------------- 1127 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 K+GVP SG++ L++GLTGE FD+P TVG IY Sbjct: 1128 -----KAGVPA------------------------SGRTYLHNGLTGEKFDQPTTVGIIY 1158 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA +LQE+L Sbjct: 1159 MLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAANILQEIL 1218 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 T+KSDDV+GR + YE+IV G + G PESFNVLV E++ LGL I L+ Sbjct: 1219 TVKSDDVIGRAKTYEAIVKGENLPTPGVPESFNVLVHELRGLGLDITLD 1267 >gi|327404146|ref|YP_004344984.1| DNA-directed RNA polymerase subunit beta [Fluviicola taffensis DSM 16823] gi|327319654|gb|AEA44146.1| DNA-directed RNA polymerase subunit beta [Fluviicola taffensis DSM 16823] Length = 1270 Score = 1332 bits (3447), Expect = 0.0, Method: Composition-based stats. Identities = 575/1365 (42%), Positives = 818/1365 (59%), Gaps = 116/1365 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F + PD +++Q S+ F + P+ R +EGL F FPIT Sbjct: 9 TRINFASSKNQFAYPDFLDIQLKSFQEFFQLETTPENRESEGLFKVFAENFPITDTRNQF 68 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +D+C+ R LTY+VPLK L+L D + + Q +Y+ Sbjct: 69 VLEFLDYFIDPPRYTIDECIERGLTYSVPLKAKLKLYCTDPEHEDFETIV-----QDVYL 123 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT G+FVI G +R++VSQLHRSPG+ F + +G LY+ R+IP +G W+ Sbjct: 124 GTIPYMTPKGSFVINGAERVIVSQLHRSPGVFFGQSR---HANGTKLYSARVIPFKGSWI 180 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D +++ IDR++K+PVT+ A+G +++ +IL F Sbjct: 181 EFATDINSVMYAYIDRKKKLPVTTLFRAIGYETDKDILEIFG------------------ 222 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 + V + G++L + +LKS E G + Sbjct: 223 ---------LADEVKANKANLKKCVGRRLAARVLKSWIED------------FGDEDTGE 261 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTDKNKDR 370 +V+ E E+ ++ V++E ++ + + ++ + D+ + + I NTL D + Sbjct: 262 VVSIERNEVILDRETVLEEHHVDLVIDAGVKTVIFHKEDANSADYTIIYNTLQKDTSNSE 321 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+ IYR +R + + A+ +F LFF +YDL VGR +MN +LN+D ++ R Sbjct: 322 KEAVEHIYRQLRNAEPPDYETAKGVFEKLFFSDARYDLGEVGRYRMNKKLNIDNSEESRV 381 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + K DI++IIK L++L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I+ER+ Sbjct: 382 LTKNDILSIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTIRERM 441 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++QLSQ + N LS +TH RRLSALG GG++ Sbjct: 442 NVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLSEVTHKRRLSALGPGGLS 501 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+C ET EG NIGL+SSL FA+VN GFIETPYR V +GKV Sbjct: 502 RERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVFAKVNKLGFIETPYRSVSNGKV 561 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 T++ +YLSA EE+ + IAQAN+ +DE G+F +V R G+ +V + + +D Sbjct: 562 DTTSEPIYLSAEEEDEKMIAQANAIVDEKGNFLSNVVKARFEGDFPVVQPKDLHLMDVGA 621 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 Q+ SIAAS IPFLE+DD+NR LMG NMQRQAVPLLK ++P VGTG+E +VA+ S I Sbjct: 622 NQIASIAASSIPFLEHDDANRALMGSNMQRQAVPLLKPQSPVVGTGIEQLVARDSRVLIN 681 Query: 729 AKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G VE VDA IVIR + L S V Y L KFQ++NQ+T +N +P+V+ G Sbjct: 682 AEGPGTVEYVDANEIVIRYDWSADDKLVSFDSEVIRYSLTKFQKTNQSTTINLKPIVRKG 741 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 D + ++ +G +T G+LALG+N+ VAFMPW GYNFED+++ISER+V +D+FTSIHI+ Sbjct: 742 DRIDFGQVLCEGYATQGGELALGQNLKVAFMPWKGYNFEDAIVISERVVRDDIFTSIHID 801 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + RDTK G EE+T DIPNVSEE K++DE G+I +GAE+ GDIL+GKITPKGE+ Sbjct: 802 EYSLDVRDTKRGMEELTSDIPNVSEEATKDLDENGLIRIGAEIKEGDILIGKITPKGETD 861 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D SL+ + G V+ ++F+R K+ +S + ++ +E Sbjct: 862 PSPEEKLLRAIFGDKAGDVKDASLKAGPSLRGVVIQKKLFSRA--IKDRKSKAQDKPVLE 919 Query: 966 LLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 +L + D + L + +LM IL G + KK T + + + Sbjct: 920 VLDTEYDRDYADLKEKLADKLMTILGETKSAGVFNNFKEEIIKKGTKFTHKNLLVIDYTI 979 Query: 1021 WW-QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 + + + L + + L +K K I GD++P G++++ KV+VA Sbjct: 980 VNPTSWTAEAHINALISRLLHNFTIKANDLLGIYKRKKFHISVGDELPAGIVKMAKVYVA 1039 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR ++ GDKMAGRHGNKGIV+ I+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ET Sbjct: 1040 QKRKLKVGDKMAGRHGNKGIVANIVRAEDMPFLEDGTPVDIVLNPLGVPSRMNLGQIYET 1099 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LGWA LG K + I D +I+ Sbjct: 1100 VLGWAGQKLGVKFATPIFDGAKPEEINEWTD----------------------------- 1130 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 K+GVP SG++ LYDG TG+ F +P TVG IYMLKL Sbjct: 1131 -KAGVP------------------------RSGKTYLYDGGTGDRFHQPATVGIIYMLKL 1165 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA +LQE+LT+KS Sbjct: 1166 SHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAANILQEILTVKS 1225 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 DDV+GR + YE+IV G++ E G PESFNVL+ E++ LGL++ ++ Sbjct: 1226 DDVMGRAKAYEAIVKGDNIPEPGIPESFNVLLHELRGLGLNVSMD 1270 >gi|149278890|ref|ZP_01885025.1| DNA-directed RNA polymerase subunit beta [Pedobacter sp. BAL39] gi|149230509|gb|EDM35893.1| DNA-directed RNA polymerase subunit beta [Pedobacter sp. BAL39] Length = 1267 Score = 1332 bits (3446), Expect = 0.0, Method: Composition-based stats. Identities = 589/1369 (43%), Positives = 820/1369 (59%), Gaps = 119/1369 (8%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R F ++ IID PD ++VQ S+ F + D R EGL F FPIT Sbjct: 4 KVDQRVNFARSKHIIDYPDFLDVQLQSFREFFQIETTSDNRHTEGLFKVFAENFPITDSR 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEF+ Y DPP++D+ +C+ R LTY+VPLK L+L D + I Q Sbjct: 64 NIFVLEFLDYFIDPPRYDIPECIDRGLTYSVPLKAKLKLSCNDAEHEDFETII-----QD 118 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +Y+G +P MT GTFVI G +R++VSQLHRSPG+ F + +G LY+ R+IP +G Sbjct: 119 VYLGTIPYMTPKGTFVINGAERVIVSQLHRSPGVFFGQSR---HTNGTKLYSARVIPFKG 175 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ D ++++ IDR++K PVT+ L A+G DS+ +IL F Sbjct: 176 SWIEFATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFDLADEVKVSKSGLKKY 235 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + G+KL + +L+ E V Sbjct: 236 I---------------------------GRKLAARVLRKWVEDFVDEDT----------- 257 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVTDK 366 ++V+ + E+ ++ V+++ ++ I + ++ I + D + Y I NTL D Sbjct: 258 -GEVVSIDRNEVILDRDTVLEDDHIDMIIDAGVKTIILSKDDGASQADYTIIYNTLQKDT 316 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 + K+A+ +IYR +R + A + LFF +YDL VGR ++N +L +DTPD Sbjct: 317 SNSEKEAVENIYRALRNAEPPDEETARGIIERLFFSDKRYDLGDVGRYRINRKLKMDTPD 376 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 V+ + K DIIAI+K L+ L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I Sbjct: 377 HVKVLTKADIIAIVKYLIKLINSKEEVDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTI 436 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 +ER++ D + P DLINA+ + S + FF ++QLSQ + N L+ ITH RRLSALG Sbjct: 437 RERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGP 496 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG++R RAG E+RDVH THYGR+C ET EG NIGL+SSL A++N GFIETPY+KV Sbjct: 497 GGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKINNLGFIETPYKKVK 556 Query: 607 DGKVT--NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 DG V +V+YLSA +E+ + IAQAN++ D+ G+FT V R G+ ++ EK+D + Sbjct: 557 DGIVQVDEEVIYLSAEDEDGKTIAQANAAYDDQGNFTTSRVKARYEGDFPVIEPEKLDLM 616 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D +P Q+ SIAASLIPFLE+DD+NR LMG NMQRQAVPLL+ EAP VGTG+E VA+ S Sbjct: 617 DVAPNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLEGRVARDSR 676 Query: 725 AAIVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 I A+ G VE VDA I I+ L Y+L+KF+++NQNTC+N +P+ Sbjct: 677 TLINAEGDGTVEYVDANEITIKYVRNDGDRLVSFEGDSKTYKLIKFKKTNQNTCINLKPI 736 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VK G +V + ++ +G +T+ G+LALGRN+ VAFMPW GYNFED+++I+ER+V ED+FTS Sbjct: 737 VKKGQKVVKGQVLCEGYATENGELALGRNLKVAFMPWQGYNFEDAIVINERIVREDIFTS 796 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 +HIEEFE+ RDTK G EE+T DIPNVSEE K++DE GII VGAEV GDIL+GKITPK Sbjct: 797 LHIEEFELEVRDTKRGEEELTPDIPNVSEEATKDLDENGIIRVGAEVKEGDILIGKITPK 856 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GES +PEEKLLRAIFG+KA DV+D SL+ P + G V+D ++F+R + + + E+ Sbjct: 857 GESDPSPEEKLLRAIFGDKAGDVKDASLKTPPSIKGVVIDTKLFSRA----KKTTKAEEK 912 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-----KSTVLSSDLISEY 1016 I+ L + + L + +L +I+ G+ + +K K + +++ Sbjct: 913 AAIDKLDKKYEIATTNLKNELVDKLFQIVNGKTSQGIFNVYKELLFPKGAKFTQKSLADL 972 Query: 1017 PRSQWWQF-AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075 + + D+ ++ L Y + +K I GD++P G++++ K Sbjct: 973 EYAHINPYKWTTDDDKNEQIKMLLHNYGIRVNEELGAYKRDKFAISVGDELPSGIVQMAK 1032 Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135 V+VA KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQ Sbjct: 1033 VYVAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNLGQ 1092 Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 I+ET L WA LG K + I D + ++ + Sbjct: 1093 IYETVLAWAGKELGVKFATPIFDGAKHDEVEEWIA------------------------- 1127 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 K+GVP SG++ L++GLTGE FD+P TVG IY Sbjct: 1128 -----KAGVPA------------------------SGRTYLHNGLTGEKFDQPTTVGIIY 1158 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA +LQE+L Sbjct: 1159 MLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAANILQEIL 1218 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 T+KSDDV+GR + YE+IV G + G PESFNVLV E++ LGL I L+ Sbjct: 1219 TVKSDDVIGRAKTYEAIVKGENLPTPGVPESFNVLVHELRGLGLDITLD 1267 >gi|332169095|gb|AEE18350.1| DNA-directed RNA polymerase, beta subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 1273 Score = 1330 bits (3443), Expect = 0.0, Method: Composition-based stats. Identities = 591/1368 (43%), Positives = 811/1368 (59%), Gaps = 117/1368 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F D PD +++Q S+ F + DER +EGL F FPIT Sbjct: 9 ERISFSSVKNRPDYPDFLDIQVKSFQDFFQLETKSDERGDEGLYNTFLENFPITDTRNNF 68 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q +Y+ Sbjct: 69 VLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDEEHEDFETIV-----QDVYL 123 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ R+IP +G W+ Sbjct: 124 GTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKGSWI 180 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D +++ IDR++K+PVT+ A+G + + +IL F L Sbjct: 181 EFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKYL-- 238 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +L + E V + Sbjct: 239 -------------------------GRKLAARVLNTWHEDFVDEDT------------GE 261 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTDKNKDR 370 +V+ E EI ++ V++++ +EEI + + + + D+ + A I NTL D Sbjct: 262 VVSIERNEIVLDRDTVLEKEHVEEILEAGAKTVLLHKEDNQQADYAIIHNTLQKDPTNSE 321 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L LD D + Sbjct: 322 KEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLGLDIEMDKQV 381 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + K DII IIK L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ER+ Sbjct: 382 LTKLDIITIIKYLIELINAKAEIDDIDHLSNRRVRTVGEQLSAQFGVGLARMARTIRERM 441 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG++ Sbjct: 442 NVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGLS 501 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A+VN GFIETPYRKV +GK+ Sbjct: 502 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVYAKVNNMGFIETPYRKVENGKI 561 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 ++ +YLSA EEE IAQAN+ +D+ G+ TEE V R G+ +V + + + D SP Sbjct: 562 DLKSEPLYLSAEEEEGMLIAQANNPMDDSGAITEEKVIARMEGDFPVVDPDTVHYADVSP 621 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPL+ A+AP VGTG+E VA S I Sbjct: 622 NQIASISASLIPFLEHDDANRALMGSNMMRQAVPLIMADAPIVGTGLERQVATDSRVLIN 681 Query: 729 AKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ AG VE VDA I I+ + L Y L+KF+++NQ T +N +P+VKVG Sbjct: 682 AEGAGTVEYVDANMITIKYDRTEDERLVSFDEDSKSYNLIKFRKTNQGTNINLKPIVKVG 741 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 D V + ++ G +T+ G+LALGRNM VAFMPW GYNFED+++ISE++V +D+FTSIHI+ Sbjct: 742 DRVEKGQVLCQGYATEKGELALGRNMKVAFMPWKGYNFEDAIVISEKVVRDDIFTSIHID 801 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKGES Sbjct: 802 EYSLDVRDTKLGNEELTNDIPNVSEEATKDLDEHGMIRIGAEVKPGDILIGKITPKGESD 861 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 TPEEKLLRAIFG+KA DV+D SL+ + G V++ ++F R DK +R+ E I Sbjct: 862 PTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVINKKLFARAIKDKRKRAKDKED--IA 919 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRSQ 1020 +L + DD+ L + +L +++ G+ A G + K + +++ Sbjct: 920 VLENEYDDKFDDLQAVVIEKLFKLVNGKTAQGVMNDLGEEVLPKGKKFTLKMLNSVEDYT 979 Query: 1021 WWQF--AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+K + L Y+ ++ L+ + + I GD++P G++++ KV++ Sbjct: 980 HLTQGTWTTDDKTNTLIADLLHNYKIKENDLQGNLRREKFTISVGDELPAGIIKLAKVYI 1039 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+E Sbjct: 1040 AKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYE 1099 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 T LGWA LG+ + I D I+ L Sbjct: 1100 TVLGWAGQKLGRTYATPIFDGATLDQINALTD---------------------------- 1131 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 ++G+P G + LYDG TG+ FD+P TVG IYMLK Sbjct: 1132 --EAGIP------------------------RFGHTYLYDGGTGDRFDQPATVGVIYMLK 1165 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+K Sbjct: 1166 LGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASATLREILTVK 1225 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 SDDV+GR + YESIV G E G PESFNVL+ E++ LGL I LEN Sbjct: 1226 SDDVIGRAKTYESIVKGEPMPEPGLPESFNVLMHELKGLGLDIRLENK 1273 >gi|163755836|ref|ZP_02162954.1| DNA-directed RNA polymerase subunit beta [Kordia algicida OT-1] gi|161324357|gb|EDP95688.1| DNA-directed RNA polymerase subunit beta [Kordia algicida OT-1] Length = 1269 Score = 1328 bits (3438), Expect = 0.0, Method: Composition-based stats. Identities = 588/1372 (42%), Positives = 807/1372 (58%), Gaps = 117/1372 (8%) Query: 7 FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPIT 66 F R F D PD +++Q S+ F + +ER EGL F+ FPIT Sbjct: 2 FTNQ-TERLNFASAKHTPDYPDFLDIQIKSFQDFFQLETKSEERGEEGLYNTFQENFPIT 60 Query: 67 AFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIK 126 +LEF+ Y DPP++++ +C+ R LTY+VPLK L+L D + + Sbjct: 61 DTRNQFVLEFLDYFVDPPRYNIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV---- 116 Query: 127 EQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIP 186 Q +Y+G +P MT GTF I G +R+VVSQLHRSPG+ F +G LY+ R+IP Sbjct: 117 -QDVYLGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIP 172 Query: 187 DQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFW 245 +G W++ D +++ IDR++K+PVT+ A+G +S+ +IL F Sbjct: 173 FKGSWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGFESDKDILEIFDLAEEVKVSKSGL 232 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCG 305 L G+KL + +L + E V Sbjct: 233 KKVL---------------------------GRKLAARVLNTWHEDFVDEDT-------- 257 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYV-DSVNNNAYIRNTLVT 364 ++V+ E EI ++ +++++ +EEI + ++ I + + + A I NTL Sbjct: 258 ----GEVVSIERNEIVLDRDTILEKEHIEEIVEAGVKTILLHKEENQAGDYAIIHNTLQK 313 Query: 365 DKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDT 424 D K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L L+ Sbjct: 314 DPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGGVGRYRMNKKLGLNI 373 Query: 425 PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 D + + KEDII IIK L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R Sbjct: 374 DMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQLAQQFGVGLARMAR 433 Query: 485 SIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSAL 544 +I+ER++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSAL Sbjct: 434 TIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSAL 493 Query: 545 GQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604 G GG++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA+VN+ GF+ETPYRK Sbjct: 494 GPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVFAKVNSMGFLETPYRK 553 Query: 605 VCDGKV-TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 V +GKV YLSA EEE IAQAN L EDG+ E V R G+ +V +I + Sbjct: 554 VENGKVDIEKFAYLSAEEEEGMKIAQANIPLKEDGTINVEKVIAREEGDFPVVNPSEIQY 613 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 D +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ ++P VGTG+E VA S Sbjct: 614 TDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPQSPIVGTGLERQVASDS 673 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + A+ G+VE VDA +I I+ + L Y L+KF+++NQ+T +N +P Sbjct: 674 RVLVNAEGDGLVEYVDANKITIKYDRTDDERLVSFDGDSKTYNLIKFRKTNQSTSINLKP 733 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V+ GD V++ ++ +G +T G+LALGRNM VAFMPW GYNFED+++ISE++V ED+FT Sbjct: 734 IVRRGDRVKKGQVLCEGYATQKGELALGRNMKVAFMPWKGYNFEDAIVISEKVVREDIFT 793 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHI+E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITP Sbjct: 794 SIHIDEYSMDVRDTKLGAEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITP 853 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGES TPEEKLLRAIFG+KA DV+D SL+ + G V++ ++F+R DK +R+ E Sbjct: 854 KGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVINKKLFSRAIKDKRKRAKDKE 913 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISE 1015 +I L + + L + +L I+ G+ + G + K + +++ Sbjct: 914 --EIATLELEYATKFEELRGVLIEKLFTIVNGKTSQGVQNDLGEEVLPKGKKFTLKMLNA 971 Query: 1016 YPRSQWWQ--FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRV 1073 D+ R V L Y+ + L+ + I GD++P G+L++ Sbjct: 972 VEDYAHLTGGTWTTDDDTNRAVADLVHNYKIKLNDLQGALRRDKFTISVGDELPAGILKL 1031 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 KV++A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+ Sbjct: 1032 AKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNI 1091 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQI+ET LGWA L KK + I D + I+ + Sbjct: 1092 GQIYETVLGWAGEKLDKKYATPIFDGASLDQINEITD----------------------- 1128 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 ++GVP G + LYDG TGE FD+P TVG Sbjct: 1129 -------EAGVP------------------------RFGHTYLYDGGTGERFDQPATVGI 1157 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E Sbjct: 1158 IYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLRE 1217 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 +LT+KSDDV+GR + YESIV G E G PESFNVL+ E++ LGL I LE Sbjct: 1218 ILTVKSDDVIGRAKTYESIVKGEPMPEPGLPESFNVLMHELKGLGLDIRLEE 1269 >gi|163787871|ref|ZP_02182318.1| DNA-directed RNA polymerase subunit beta [Flavobacteriales bacterium ALC-1] gi|159877759|gb|EDP71816.1| DNA-directed RNA polymerase subunit beta [Flavobacteriales bacterium ALC-1] Length = 1270 Score = 1328 bits (3436), Expect = 0.0, Method: Composition-based stats. Identities = 591/1371 (43%), Positives = 814/1371 (59%), Gaps = 119/1371 (8%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R F D PD +++Q S+ F + +ER NEGL F FPIT Sbjct: 4 KKAERINFSSIVNRTDYPDFLDIQIKSFQDFFQLETKSEERGNEGLYNTFMENFPITDTR 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEF+ Y DPP++ +++C+ R LTY+VPLK L+L D + + Q Sbjct: 64 NQFVLEFLDYFIDPPRYSIEECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QD 118 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +Y+G +P MT GTF I G +R+VVSQLHRSPG+ F +G LY+ R+IP +G Sbjct: 119 VYLGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFSQSF---HANGTKLYSARVIPFKG 175 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ D +++ IDR++K+PVT+ A+G + + +IL F Sbjct: 176 SWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIF---------------- 219 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ + +G + + G+KL + +L + E V Sbjct: 220 ----------DLAEEVKVSKSGLKKV-IGRKLAARVLNTWHEDFVDEDT----------- 257 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVTDK 366 ++V+ E EI ++ +ID+ ++EEI +E++ I +L+ +S Y I NTL D Sbjct: 258 -GEVVSIERNEIVLDRDTIIDKDNIEEILEAEVKTI-LLHKESAQQGDYAIIHNTLQKDP 315 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 K+A+ IYR +R + A + + LFF +Y L VGR +MN +L LD Sbjct: 316 TNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEVGRYRMNKKLLLDIGM 375 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 D + + KEDII IIK L++L N K IDDID+L NRRVR+VGE L +Q+ +GL RM R+I Sbjct: 376 DKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSSQFGVGLARMARTI 435 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 +ER++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG Sbjct: 436 RERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGP 495 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL+ FA+VN+ GFIETPYRKV Sbjct: 496 GGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVFAKVNSMGFIETPYRKVD 555 Query: 607 DGKV--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 +G V N YLSA EEE+ IAQA +DE G E + R G+ ++ +++ Sbjct: 556 NGVVDIKNAPTYLSAEEEEDMLIAQATIEVDEKGKILPEKIISRQEGDFPVIEPSNVNYT 615 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ EAP VGTG+E VA S Sbjct: 616 DVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAPIVGTGLERQVASDSR 675 Query: 725 AAIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 I A+ AG VE VDA +I IR E + S Y L+KF+++NQ T +N +P+ Sbjct: 676 VLINAEGAGTVEYVDAEKITIRYERTKEEGMVSFDSDTKTYPLVKFRKTNQGTSINLKPI 735 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V+ GD+V R ++ +G +T G+LALGRNM VAFMPW GYNFED+++ISE++V EDVFTS Sbjct: 736 VEKGDKVERGQVLCEGYATQNGELALGRNMKVAFMPWKGYNFEDAIVISEKVVREDVFTS 795 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAE+ PGDIL+GKITPK Sbjct: 796 IHIDEYSLDVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEIKPGDILIGKITPK 855 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GES TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F R K++R + ++ Sbjct: 856 GESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFARA--VKDKRKRAQDK 913 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEY 1016 E IE L D+ L + +L I+ G+ A G + K + +++ Sbjct: 914 EDIEKLEDAYDNRFDDLKNTLVEKLFTIVNGKTAQGIYNDLGEEIIPKGKKYTLKMLNAV 973 Query: 1017 PRSQWWQF--AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 D+ V L Y+ ++ L+ + + I GD++P G++++ Sbjct: 974 DDYTHLTSGRWTTDDHTNELVADLIHNYKIKENDLQGSLRREKFTISVGDELPAGIIKLA 1033 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+G Sbjct: 1034 KVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIG 1093 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVL 1194 QI+ET LGWA LG+ + I D I+ Sbjct: 1094 QIYETVLGWAGQDLGRTYATPIFDGATLDQINGFTD------------------------ 1129 Query: 1195 RVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYI 1254 ++G+P G + LYDG TG+ FD+P TVG I Sbjct: 1130 ------EAGIP------------------------RFGHTYLYDGGTGDRFDQPATVGVI 1159 Query: 1255 YMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEM 1314 YM+KL HM+ DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+ Sbjct: 1160 YMIKLGHMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREI 1219 Query: 1315 LTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 LT+KSDDV+GR + YE+IV G E G PESFNVL+ E++ LGL I LE Sbjct: 1220 LTVKSDDVIGRAKTYEAIVKGEPMPEPGLPESFNVLMHELKGLGLDIRLEE 1270 >gi|150025248|ref|YP_001296074.1| DNA-directed RNA polymerase subunit beta [Flavobacterium psychrophilum JIP02/86] gi|158513724|sp|A6GYU0|RPOB_FLAPJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|149771789|emb|CAL43263.1| DNA-directed RNA polymerase beta subunit RpoB [Flavobacterium psychrophilum JIP02/86] Length = 1270 Score = 1327 bits (3435), Expect = 0.0, Method: Composition-based stats. Identities = 585/1368 (42%), Positives = 811/1368 (59%), Gaps = 117/1368 (8%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R F I PD ++VQ S+ F + DER NEGL F FPIT Sbjct: 6 TERLNFASTKNIPAYPDFLDVQVKSFQDFFQLETKSDERGNEGLYNTFMENFPITDTRNN 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q +Y Sbjct: 66 FVLEFIDYFVDPPRYTIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QDVY 120 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ R+IP +G W Sbjct: 121 LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKGSW 177 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ D +++ IDR++K+PVT+ A+G S+ +IL F + Sbjct: 178 IEFATDINSVMYAYIDRKKKLPVTTLFRAIGFQSDKDILEIFDLAEEIKVSKSGLKKYI- 236 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 G+KL + +L + E V Sbjct: 237 --------------------------GRKLAARVLNTWHEDFVDEDT------------G 258 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKD 369 ++V+ E EI ++ ++D+ ++EEI S ++ I + D+ V + + I NTL D Sbjct: 259 EVVSIERNEIILDRDTILDKDNVEEIVESNVKSILLHKEDNNVVDYSIIHNTLQKDPTNS 318 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+ IYR +R + A + + LFF +Y+L VGR ++N +L LDTP + + Sbjct: 319 EKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRINKKLGLDTPMEKQ 378 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + KEDII I+K L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ER Sbjct: 379 VLTKEDIITIVKYLIELINAKADIDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIRER 438 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG+ Sbjct: 439 MNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGL 498 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A+VN GFIETPYRKV +G Sbjct: 499 SRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAKVNGMGFIETPYRKVTNGV 558 Query: 610 V--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 V T+ YLSA EEE IAQAN +DE+G T + V R G+ ++ + + D + Sbjct: 559 VDLTSVPKYLSAEEEEGMLIAQANIQMDENGKITADNVIARQEGDFPVIDPTAVHYTDVA 618 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPL++ EAP VGTG+E VA S I Sbjct: 619 PNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLIRPEAPIVGTGLERQVASDSRVLI 678 Query: 728 VAKRAGIVEQVDAIRIVIRSVE---GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ AG+VE VDA I I+ S Y+L+KF+++NQ T +N +P+V+ Sbjct: 679 NAEGAGVVEYVDADMITIKYDRTDAERAVSFESDEKTYKLIKFRKTNQGTSINLKPIVRK 738 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD+V + ++ +G +T G+LALGRN+ VAFMPW GYNFED+++ISE++V +D+FTSIH+ Sbjct: 739 GDKVIKGQVLCEGYATQNGELALGRNLKVAFMPWKGYNFEDAIVISEKVVRDDIFTSIHV 798 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +++ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKGES Sbjct: 799 DDYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGES 858 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F R K++R + +++ + Sbjct: 859 DPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVLDKKLFARA--VKDKRKRTQDKDAL 916 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 L + + + V L + +L I+ G+ + G + K + ++ Sbjct: 917 SDLEMEFEVKFVELKDKLVDKLFTIVNGKTSQGVMNDLGEEVLPKGKKYTQKMLYAVEDF 976 Query: 1020 QWWQ--FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 V D++ + V L Y+ + L+ + + I GD++P G+L++ KV+ Sbjct: 977 AHLTRGQWVADDETNKMVNDLIHNYKIKLNDLQGALRREKFTITVGDELPAGILKLAKVY 1036 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ Sbjct: 1037 IAKKRKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIY 1096 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 ET LGWA LG+K + I D + I+ + Sbjct: 1097 ETVLGWAGQNLGRKYATPIFDGASLDQINAITD--------------------------- 1129 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 ++GVP G + LYDG TGE F + TVG IYML Sbjct: 1130 ---EAGVP------------------------RFGHTHLYDGGTGERFHQAATVGVIYML 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+ Sbjct: 1163 KLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTV 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 KSDDV+GR + YE+IV G E G PESFNVL+ E++ LGL I LE Sbjct: 1223 KSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE 1270 >gi|325954353|ref|YP_004238013.1| DNA-directed RNA polymerase subunit beta [Weeksella virosa DSM 16922] gi|323436971|gb|ADX67435.1| DNA-directed RNA polymerase subunit beta [Weeksella virosa DSM 16922] Length = 1278 Score = 1327 bits (3435), Expect = 0.0, Method: Composition-based stats. Identities = 586/1381 (42%), Positives = 816/1381 (59%), Gaps = 119/1381 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA + R F + PD +++Q S++ F + PD+R NEGL F Sbjct: 1 MATTTNNPAVKNERLSFASTKAVAQFPDFLDIQIKSFEDFFQLETRPDQRNNEGLFKTFA 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 FPIT +LEF+ Y DPP++ +D+C+ R LTY+VPLK L+L D + Sbjct: 61 ENFPITDTRNQFVLEFLDYFVDPPRYSIDECIERGLTYSVPLKARLKLYCTDEEHEDFET 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 + Q +Y+G +P MT G+F+I G +R++VSQLHRSPG+ F +G LY Sbjct: 121 VV-----QDVYLGTIPYMTPSGSFIINGAERVIVSQLHRSPGVFFGQSF---HANGTKLY 172 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 + RIIP +G W++ D +++ IDR++K+P+T+ L A+G + + +IL F Sbjct: 173 SSRIIPFKGSWIEFATDINSVMYAYIDRKKKLPLTTLLRAIGYERDKDILEIFDLAEEVK 232 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 L G+KL + +L + E V Sbjct: 233 VTKANLKKIL---------------------------GRKLAARVLNTWHEDFVDEDT-- 263 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYI 358 ++V+ E EI ++ +I++ +++I S ++ I + D+ + + I Sbjct: 264 ----------GEVVSIERNEIILDRETIIEKDHIDQIVDSGVKTILLHKEDNNSADYGII 313 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 NTL D K+A+ IYR +R + A + + LFF +Y L VGR ++N Sbjct: 314 HNTLQKDPTNTEKEAVEYIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEVGRYRLNK 373 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L+ +D+ + K+DII+IIK L++L N K +DDID+L NRRVR+VGE + Q+ +G Sbjct: 374 KLGLNISEDIEVLTKDDIISIIKYLIELINSKAEVDDIDHLSNRRVRTVGEQMAAQFGVG 433 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L RM R+I+ER++ D + P DLINAK + S + FF ++QLSQ + N LS ITH Sbjct: 434 LARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLSEITHK 493 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA+VN GFI Sbjct: 494 RRLSALGPGGLSRERAGFEVRDVHHTHYGRLCPIETPEGPNIGLISSLCVFAKVNNLGFI 553 Query: 599 ETPYRKVCDGKVT--NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 ETPYR+V GKV D +YLSA EEE + I QAN + EDG+ E V R G+ +V Sbjct: 554 ETPYREVEKGKVNLEKDPIYLSAEEEEGKIITQANIEMGEDGTIQTERVVAREDGDFPVV 613 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 ++D +D +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLLK +AP VGTG+E Sbjct: 614 EPHEVDLMDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLKPQAPIVGTGLE 673 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQN 773 VAK S + A+R G V VDA +I+I +L S Y L KF+++NQ Sbjct: 674 KQVAKDSRILVNAEREGTVTYVDANKIIIAYDRTENEELVSFDSNEKTYSLTKFRKTNQG 733 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 T + +P+VKVGD V + ++ +G +T+ G+LA+GRNM+VAFMPW GYNFED+++ISE+ Sbjct: 734 TTICLKPIVKVGDRVDKGQVLCEGYATEGGELAIGRNMVVAFMPWQGYNFEDAIVISEKA 793 Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDI 893 V ED FTSIHI+E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDI Sbjct: 794 VREDWFTSIHIDEYSLDVRDTKLGMEELTADIPNVSEEATKDLDENGMIRIGAEVKPGDI 853 Query: 894 LVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKN 953 L+GKITPKGES TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R K+ Sbjct: 854 LIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSR--SIKD 911 Query: 954 ERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVL 1008 +R S ++ IE + + + + L + +L +L G+ + + KK Sbjct: 912 KRKRSQDKAIIESIENEFEVKFNELRNVLLEKLYILLNGKTSQGVYNDLKEEVIKKGVKY 971 Query: 1009 SSDLISE----YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD 1064 + ++ + DE V+ L Y+ + L+ + I GD Sbjct: 972 TQKMLQNVEDYLNLNGSETVWTTDEDKNELVKELLHNYKIKHNDLQGALNRERFTIAVGD 1031 Query: 1065 DMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNP 1124 ++P G++++ K+++A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGT VDIVLNP Sbjct: 1032 ELPAGIVKLAKIYIAKKRKLRVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTAVDIVLNP 1091 Query: 1125 LGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEK 1184 LGVPSRMN+GQI+ET LGWA + LGKK + I D DI + Sbjct: 1092 LGVPSRMNIGQIYETVLGWAGMKLGKKFATPIFDGAEIEDIDNITD-------------- 1137 Query: 1185 ISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 ++G+P + G + LYDG TGE Sbjct: 1138 ----------------EAGIP------------------------KHGTTYLYDGNTGER 1157 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 F + TVG IYMLKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A Sbjct: 1158 FAQKATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEA 1217 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 +GAA +L+E+LT+KSDDVVGR + YE+IV G E G PESFNVL+ E+Q LGL I+LE Sbjct: 1218 FGAANILREILTVKSDDVVGRAKTYEAIVKGEPMPEPGIPESFNVLLHELQGLGLDINLE 1277 Query: 1365 N 1365 + Sbjct: 1278 D 1278 >gi|326334994|ref|ZP_08201194.1| DNA-directed RNA polymerase subunit beta [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692799|gb|EGD34738.1| DNA-directed RNA polymerase subunit beta [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 1269 Score = 1327 bits (3434), Expect = 0.0, Method: Composition-based stats. Identities = 582/1365 (42%), Positives = 816/1365 (59%), Gaps = 116/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + D PD +++Q S+ F M DER NEGL + FK FPIT + Sbjct: 8 RINFASTKHVPDYPDFLDIQVKSFQDFFQMETKSDERRNEGLYSTFKENFPITDTRNQFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ V++C+ R LTY+VPLK L+L D + + Q +Y+G Sbjct: 68 LEFLDYFVDPPRYSVEECIERGLTYSVPLKARLKLFCTDPEHEDFETIV-----QDVYLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT GTF+I G +R++VSQLHRSPG+ F +G LY+ RIIP +G W++ Sbjct: 123 TIPYMTGSGTFIINGAERVIVSQLHRSPGVFFGQS---YHANGTKLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ A+G + + +IL F L Sbjct: 180 FTTDINNVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKYL--- 236 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G++L + +L + E V ++ Sbjct: 237 ------------------------GRRLAARVLNTWHEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDRK 371 V+ E EI ++ V++++ ++EI ++ ++ I + D + I NTL D K Sbjct: 261 VSIERNEIILDRDTVLEKEHIDEIINANVKTILLHKEDERAIDYNIIHNTLQKDPTNSEK 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R + A + + LFF +Y+L VGR +MN +L LD P + + + Sbjct: 321 EAVEHIYRQLRNAEPPDEETARDIIDKLFFSDQRYNLGDVGRYRMNKKLGLDIPMEKQVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KEDII I+K L++L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I+ER++ Sbjct: 381 TKEDIITIVKYLIELINSKAEVDDIDHLSNRRVRTVGEQLAAQFGVGLSRMARTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF +SQLSQ + N L+ ITH RRLSALG GG++R Sbjct: 441 VRDNEVFTPLDLINAKTLSSVINSFFGTSQLSQFMDQTNPLAEITHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A+VN+ GFIETPYRKV +GK+ Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVYAKVNSMGFIETPYRKVENGKIK 560 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 +++VY+SA EEE I QAN +D+ G+ EE + + G+ +VPRE++++ID +P Q Sbjct: 561 LDELVYMSAEEEEGLKIPQANIQVDDQGNILEERLVVKEDGDFPIVPREEVNYIDVAPNQ 620 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 + SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ EAP VGTG+E VA S + A+ Sbjct: 621 IASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAPIVGTGLEQRVATDSRVLMNAE 680 Query: 731 RAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 R G VE VDA +IVI+ + L S + Y L+KF+R+NQ TC+N +P+V+ GD Sbjct: 681 REGTVEYVDAKKIVIKYDRTEDEILVSFDSELTTYDLIKFRRTNQGTCINLKPIVRKGDR 740 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++ ++ +G +T G+LALGRNM VAFMPW GYNFED+++ISER++ ED+FTSIHI+E+ Sbjct: 741 VKKGQVLCEGYATQNGELALGRNMKVAFMPWKGYNFEDAIVISERVIREDIFTSIHIDEY 800 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 + RDTKLG EE+T DIPNVSE+ K++DE GI+ +GA + PGDIL+GK+TPKGES T Sbjct: 801 TLDVRDTKLGVEELTNDIPNVSEDATKDLDENGIVRIGANIKPGDILIGKVTPKGESDPT 860 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFG+KA DV+D SL+ + G V+ ++F+R K +RS E+++I L Sbjct: 861 PEEKLLRAIFGDKAGDVKDASLKASPSLEGVVIGKKLFSRAVKTKQKRSK--EKDEIAAL 918 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRSQ-- 1020 + + L + +L ++ G+ + G + K + + E Sbjct: 919 DAAFNAKAGELRDRLLEKLFSLVNGKTSQGVFNDLGEEIIPKGRKHTQKGLREIEDYTHL 978 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 D+ + + L Y+ + L+ + + GD++P G++++ K+++A Sbjct: 979 LSGGWTTDDHTNQLINDLIHNYKIKLNDLQGMLRRDKFTLSVGDELPAGIMKLAKIYIAK 1038 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL DGTPVDIVLNPLGVPSRMN+GQI+ET Sbjct: 1039 KRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLADGTPVDIVLNPLGVPSRMNIGQIYETV 1098 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA LG K + I D + I+ Sbjct: 1099 LGWAGQKLGLKFATPIFDGASLEQITEYTEKAG--------------------------- 1131 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 P F G + LYDG TGE FD+ TVG IYM+KL Sbjct: 1132 -------VPAF--------------------GHTYLYDGGTGERFDQKATVGVIYMIKLG 1164 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 HM+ DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+KSD Sbjct: 1165 HMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTVKSD 1224 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV+GR R YE+IV G+ E G PESFNVL+ E++ LGL I LE Sbjct: 1225 DVIGRARTYEAIVHGDTMPEPGLPESFNVLMHELKGLGLDIRLEE 1269 >gi|218264355|ref|ZP_03478212.1| hypothetical protein PRABACTJOHN_03903 [Parabacteroides johnsonii DSM 18315] gi|218222053|gb|EEC94703.1| hypothetical protein PRABACTJOHN_03903 [Parabacteroides johnsonii DSM 18315] Length = 1270 Score = 1327 bits (3434), Expect = 0.0, Method: Composition-based stats. Identities = 581/1366 (42%), Positives = 805/1366 (58%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F PD +EVQ S+ FL ++ P++R EGL F FPI Sbjct: 8 QRVNFASIKNQFPYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +D+C+ R LTY+VPLK L+L D D I Q +Y+ Sbjct: 68 VLEFLDYYIDPPRYTIDECIARGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVYL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT+ GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTERGTFVINGAERVVVSQLHRSPGVFFGQS---THANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +S+ +IL F + Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFESDKDILEIFNLAEEVKVSKANLKKLI-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK+ E V + Sbjct: 238 -------------------------GRKLAARVLKTWVEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E ++ I+ V+D ++E I S ++I + D +++ A I NTL D + Sbjct: 261 VVSIERNDVIIDRESVLDSDNIEAILESGTQNILLHREDQNLSDYAIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R + + + A + LFF +YDL VGR ++N +LNL T DD++ Sbjct: 321 KEAVLYIYRQLRNAEPADEASAREVIQNLFFSEKRYDLGEVGRYRINKKLNLTTSDDIKV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+++ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKAIVDDIDHLSNRRVRTVGEQLYNQFGIGLARMSRTVRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S V FF ++ LSQ + N L+ ITH RRLSALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVVNSFFGTNALSQFMDQTNPLAEITHKRRLSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFI TPYRKV DGKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINDLGFISTPYRKVVDGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + Y +A EEE IAQ N+ LD DG F + V R + +VP +ID +D + Sbjct: 561 DFSEEGLQYYTAEEEEELTIAQGNAPLDNDGKFVRDRVKARFEADFPVVPPTEIDLMDVA 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL+ +AP VGTG+E+ VA+ S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRTDAPIVGTGIEAQVARDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 +A+R G V VDA I I+ + + V Y + K++++NQ+T V+ RP+ Sbjct: 681 MAEREGEVVFVDATCIKIKYDRSEDEEFVSFEDAVKTYNIPKWRKTNQSTTVDLRPICHR 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V+ DI+ +G ST G+LALGRN+ VA+MPW GYN+ED+++++ERMV ED FTS+H+ Sbjct: 741 GQRVKAGDILTEGYSTQNGELALGRNVKVAYMPWKGYNYEDAIVLNERMVREDFFTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 DEYILEVRETKRGMEELTSDIPNVSEEATKDLDERGIVRVGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V++ +F++ K +S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKATPSLRGVVIETALFSKA--VKKRKSRLTDKAIL 918 Query: 965 ELLARDKDDEQVILDRNIYSRL-----MEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 L + + + L + +L ++ G + K S + E + Sbjct: 919 PKLDEEYEMKMADLKNLLVDKLLVLTNGKVSQGVKDYMNTEIIAKGVKFSRKALEELDYN 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D ++ + + Y L+ + K + GD++P G++++ KV++ Sbjct: 979 SIQVSKWTADADKNELIKQVILNYLKKYKELDAELRRKKFDLTIGDELPTGIVQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR IQ GDKMAGRHGNKGIVS+I+ EDMPFL+DGTPVDI LNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLEDGTPVDICLNPLGVPSRMNLGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LGWA +G K + I D D++ Sbjct: 1099 AVLGWAGRTMGVKFATPIFDGATLDDMNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P G+S LYDG TGE FD+P TVG Y LK Sbjct: 1131 --KAGLP------------------------RYGKSYLYDGGTGERFDQPATVGVTYFLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA+VLQE+LTIK Sbjct: 1165 LGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHVLQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G+ + G PES NVL+ E++ LGLS L+ Sbjct: 1225 SDDVVGRSKAYEAIVKGDPMPQPGIPESLNVLLHELRGLGLSFTLD 1270 >gi|313204192|ref|YP_004042849.1| DNA-directed RNA polymerase subunit beta [Paludibacter propionicigenes WB4] gi|312443508|gb|ADQ79864.1| DNA-directed RNA polymerase subunit beta [Paludibacter propionicigenes WB4] Length = 1270 Score = 1327 bits (3434), Expect = 0.0, Method: Composition-based stats. Identities = 589/1368 (43%), Positives = 813/1368 (59%), Gaps = 117/1368 (8%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R F ++ PD +EVQ S+ F M+ AP++R +EGL F FPI Sbjct: 6 KAQRINFASIKNQLEYPDFLEVQLKSFQDFFQMDTAPEKRKSEGLYKVFSENFPIADTRN 65 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 +LEF+ Y DPP++ +D+C+ R LTY+VPLK L+L D D I Q + Sbjct: 66 NFILEFLDYYVDPPRYSIDECVERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDV 120 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+G +P MT GTFVI G +R++VSQLHRSPG+ F +G LY+ RIIP +G Sbjct: 121 YLGPIPYMTAKGTFVINGAERVIVSQLHRSPGVFFGQS---THANGTKLYSARIIPFRGS 177 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPL 249 W++ D ++++ IDR++K+PVT+ L A+G +S+ +IL F + Sbjct: 178 WIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFESDKDILEIFNLAEEIKVSKTSLKKAI 237 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 G+KL + +LK+ E V Sbjct: 238 ---------------------------GQKLAARVLKTWVEDFVDEDT------------ 258 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNK 368 ++V E E+ I+ +++ ++EI + I + D + N+ A I NTL D + Sbjct: 259 GEVVTIERNEVIIDRETILENSHIDEIIEAGTPTILLHKADANQNDYAIIYNTLQKDPSN 318 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 K+A+L IYR +R + S A + N LFF +YDL VGR ++N +LNL T D Sbjct: 319 SEKEAVLYIYRQLRNAVPADDSTAREVINNLFFPEKRYDLGNVGRFRINRKLNLTTSMDT 378 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+E Sbjct: 379 KVLTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLYNQFGVGLSRMARTIRE 438 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R++ D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG Sbjct: 439 RMNVRDNEVFTPIDLINAKSISSVINSFFGTNALSQFMDQQNPLAEITHKRRMSALGPGG 498 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFIETPYRKV D Sbjct: 499 LSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCIYAKINELGFIETPYRKVTDS 558 Query: 609 KV---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 V + Y +A EEEN IAQ N+ L++DG F V R + +V ++++ +D Sbjct: 559 VVDISEAGIEYFTAEEEENLIIAQGNAPLNDDGGFIRTKVKSRLGADFPVVAPDEVNLMD 618 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 SP Q+ SIAA+LIPFLE+DD+NR LMG NM RQAVPLL+ EAP VGTG+E+ + + S Sbjct: 619 VSPSQIASIAAALIPFLEHDDANRALMGSNMMRQAVPLLRCEAPIVGTGIEAQLIRDSRT 678 Query: 726 AIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 + A+ G VE VDA I IR + + S V Y+L KFQ++NQNT ++ RP+V Sbjct: 679 QVAAEGEGEVEFVDATCIKIRYDRTEDEEFVSFESAVKEYKLPKFQKTNQNTTIDLRPIV 738 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K G+ V I+ +G +T G+LA+G+N+ VAFMPW GYNFED+++I+ER+V ED+FTSI Sbjct: 739 KKGERVTNGQIMTEGYATQNGELAIGKNLKVAFMPWKGYNFEDAIVINERVVREDIFTSI 798 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 H+ E + R+TK G EE T DIPNVSEE K++DE GII +GA + PGDI++GKITPKG Sbjct: 799 HVVEQLLDVRETKRGIEEFTSDIPNVSEEATKDLDENGIIRIGARIEPGDIIIGKITPKG 858 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ES +PEEKLLRAIFG+KA DV+D SL+ +SG V+ R+F++ KN +S ++ Sbjct: 859 ESDPSPEEKLLRAIFGDKAGDVKDASLKATPSLSGVVIGKRLFSKA--QKNRKSKLADKA 916 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYP 1017 + L + +++ IL + +L+ +L G G +++ + + + E Sbjct: 917 VLPKLDEEFENQAAILRDTLVEKLIVLLGDKTSAGVKDFLGADVISRNSKFTIERLREID 976 Query: 1018 RSQW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 + D V+ L + Y L+ + K + I GD++P G++++ KV Sbjct: 977 YTAVQLSKWTTDSHKNELVKQLIMNYLRKYKELDAQIKRQKFNITIGDELPNGIVQIAKV 1036 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 ++A KR I+ GDKMAGRHGNKGIVSRI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI Sbjct: 1037 YIAKKRKIRVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNLGQI 1096 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 FET LGWA LG + + I D + D++ Sbjct: 1097 FETVLGWAGKELGLRFATPIFDGASLDDLN------------------------------ 1126 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 A K+GVP G++ LYDG TGE FD+ TVG IYM Sbjct: 1127 AWTDKAGVP------------------------NYGKTYLYDGGTGERFDQTATVGVIYM 1162 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA++LQE+LT Sbjct: 1163 LKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHILQEILT 1222 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 +KSDDV+GR R YE+IV G+ G PES NVL+ E++ LGLSI L+ Sbjct: 1223 VKSDDVMGRARTYEAIVKGDPMPTPGIPESLNVLLHELRGLGLSISLD 1270 >gi|154491721|ref|ZP_02031347.1| hypothetical protein PARMER_01332 [Parabacteroides merdae ATCC 43184] gi|154087962|gb|EDN87007.1| hypothetical protein PARMER_01332 [Parabacteroides merdae ATCC 43184] Length = 1270 Score = 1327 bits (3434), Expect = 0.0, Method: Composition-based stats. Identities = 580/1366 (42%), Positives = 806/1366 (59%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F PD +EVQ S+ FL ++ P++R EGL F FPI Sbjct: 8 QRVNFASIKNQFPYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +D+C+ R LTY+VPLK L+L D D I Q +Y+ Sbjct: 68 VLEFLDYYIDPPRYTIDECIARGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVYL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT+ GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTERGTFVINGAERVVVSQLHRSPGVFFGQS---THANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +S+ +IL F + Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFESDKDILEIFNLAEEVKVSKANLKKLI-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK+ E V + Sbjct: 238 -------------------------GRKLAARVLKTWVEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E ++ I+ V+D ++E I S ++I + D +++ A I NTL D + Sbjct: 261 VVSIERNDVIIDRESVLDSDNIEAILESGTQNILLHREDQNLSDYAIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R + + + A + LFF +YDL VGR ++N +LNL T DD++ Sbjct: 321 KEAVLYIYRQLRNAEPADEASAREVIQNLFFSEKRYDLGEVGRYRINKKLNLTTSDDIKV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+++ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKAIVDDIDHLSNRRVRTVGEQLYNQFGIGLARMSRTVRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S V FF ++ LSQ + N L+ ITH RRLSALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVVNSFFGTNALSQFMDQTNPLAEITHKRRLSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFI TPYRKV DGKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINDLGFISTPYRKVVDGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + Y +A EEE IAQ N+ LD++G F + V R + +VP +ID +D + Sbjct: 561 DFSEEGLQYYTAEEEEELTIAQGNAPLDDNGKFVRDRVKARFEADFPVVPPTEIDLMDVA 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL+ +AP VGTG+E+ VA+ S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRTDAPIVGTGIEAQVARDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 +A+R G V VDA I I+ + + V Y + K++++NQ+T V+ RP+ Sbjct: 681 MAEREGEVVFVDATCIKIKYDRSEDEEFVSFEDAVKTYNIPKWRKTNQSTTVDLRPICHR 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V+ DI+ +G ST G+LALGRN+ VA+MPW GYN+ED+++++ERMV ED FTS+H+ Sbjct: 741 GQRVKAGDILTEGYSTQNGELALGRNVKVAYMPWKGYNYEDAIVLNERMVREDFFTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 DEYILEVRETKRGMEELTSDIPNVSEEATKDLDERGIVRVGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V++ +F++ K +S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKATPSLRGVVIETALFSKA--IKKRKSRLTDKAIL 918 Query: 965 ELLARDKDDEQVILDRNIYSRL-----MEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 L + + + L + +L ++ G + K S + E + Sbjct: 919 PKLDEEYEMKMADLKNLLVDKLLVLTNGKVSQGVKDYMNTEIIAKGVKFSRKALEELDYN 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D ++ + + Y L+ + K + GD++P G++++ KV++ Sbjct: 979 SIQVSKWTADADKNELIKQVILNYLKKYKELDAELRRKKFDLTIGDELPTGIVQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR IQ GDKMAGRHGNKGIVS+I+ EDMPFL+DGTPVDI LNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLEDGTPVDICLNPLGVPSRMNLGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LGWA +G K + I D D++ Sbjct: 1099 AVLGWAGRTMGVKFATPIFDGATLDDMNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P G+S LYDG TGE FD+P TVG Y LK Sbjct: 1131 --KAGLP------------------------RYGKSYLYDGGTGERFDQPATVGVTYFLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA+VLQE+LTIK Sbjct: 1165 LGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHVLQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G+ + G PES NVL+ E++ LGLS L+ Sbjct: 1225 SDDVVGRSKAYEAIVKGDPMPQPGIPESLNVLLHELRGLGLSFTLD 1270 >gi|86131817|ref|ZP_01050414.1| DNA-directed RNA polymerase beta chain [Dokdonia donghaensis MED134] gi|85817639|gb|EAQ38813.1| DNA-directed RNA polymerase beta chain [Dokdonia donghaensis MED134] Length = 1273 Score = 1327 bits (3434), Expect = 0.0, Method: Composition-based stats. Identities = 587/1368 (42%), Positives = 805/1368 (58%), Gaps = 117/1368 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F D PD +++Q S+ F + DER +EGL F FPIT Sbjct: 9 ERISFSSVKNRPDYPDFLDIQVKSFQDFFQLETKSDERGDEGLYNTFLENFPITDTRNNF 68 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q +Y+ Sbjct: 69 VLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDEEHEDFETIV-----QDVYL 123 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ R+IP +G W+ Sbjct: 124 GTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKGSWI 180 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D +++ IDR++K+PVT+ A+G + + +IL F L Sbjct: 181 EFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKYL-- 238 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +L + E V + Sbjct: 239 -------------------------GRKLAARVLNTWHEDFVDEDT------------GE 261 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTDKNKDR 370 +V+ E EI ++ V++++ +EEI + + + + D+ + A I NTL D Sbjct: 262 VVSIERNEIVLDRDTVLEKEHVEEILEAGAKTVLLHKEDNQQADYAIIHNTLQKDPTNSE 321 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L LD D + Sbjct: 322 KEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLGLDIEMDKQV 381 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + K DII IIK L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ER+ Sbjct: 382 LTKLDIITIIKYLIELINAKAEIDDIDHLSNRRVRTVGEQLSAQFGVGLARMARTIRERM 441 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG++ Sbjct: 442 NVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGLS 501 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC--DG 608 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A+VN GFIETPYRKV Sbjct: 502 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVYAKVNNMGFIETPYRKVEGGKI 561 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 + ++ YLSA EEE IAQAN+ ++++G+ TEE V R G+ +V + + + D SP Sbjct: 562 DLKSEPQYLSAEEEEGMLIAQANNPMNDEGTITEEKVIARMEGDFPVVDPDTVHYADVSP 621 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPL+ A+AP VGTG+E VA S I Sbjct: 622 NQIASISASLIPFLEHDDANRALMGSNMMRQAVPLIMADAPIVGTGLERQVATDSRVLIN 681 Query: 729 AKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ AG VE VDA I I+ + L Y L+KF+++NQ T +N +P+VKVG Sbjct: 682 AEGAGTVEYVDANMITIKYDRTDDERLVSFDEDSKSYNLIKFRKTNQGTNINLKPIVKVG 741 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 D V R ++ G +T+ G+LALGRNM VAFMPW GYNFED+++ISE++V +D+FTSIHI+ Sbjct: 742 DRVERGQVLCQGYATEKGELALGRNMKVAFMPWKGYNFEDAIVISEKVVRDDIFTSIHID 801 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKGES Sbjct: 802 EYSLDVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESD 861 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 TPEEKLLRAIFG+KA DV+D SL+ + G V++ ++F R DK +R+ E I Sbjct: 862 PTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVINKKLFARAIKDKRKRAKDKED--IA 919 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRSQ 1020 +L D + L + +L +++ G+ A G + K + +++ Sbjct: 920 VLEDKYDVKFDDLQAVLIEKLFKLVNGKTAQGVMNDLGEEVLPKGKKFTLKMLNSVEDYT 979 Query: 1021 WWQF--AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+K + L Y+ ++ L+ + + I GD++P G++++ KV++ Sbjct: 980 HLTQGTWTTDDKTNTLIADLLHNYKIKENDLQGNLRREKFTISVGDELPAGIIKLAKVYI 1039 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+E Sbjct: 1040 AKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYE 1099 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 T LGWA LG+ + I D I+ L Sbjct: 1100 TVLGWAGQKLGRTYATPIFDGATLDQINALTD---------------------------- 1131 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 ++G+P G + LYDG TG+ FD+P TVG IYMLK Sbjct: 1132 --EAGIP------------------------RFGHTYLYDGGTGDRFDQPATVGVIYMLK 1165 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+K Sbjct: 1166 LGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASATLREILTVK 1225 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 SDDV+GR + YESIV G E G PESFNVL+ E++ LGL I LE Sbjct: 1226 SDDVIGRAKTYESIVKGEPMPEPGLPESFNVLMHELKGLGLDIRLEEK 1273 >gi|86140281|ref|ZP_01058840.1| DNA-directed RNA polymerase beta subunit [Leeuwenhoekiella blandensis MED217] gi|85832223|gb|EAQ50672.1| DNA-directed RNA polymerase beta subunit [Leeuwenhoekiella blandensis MED217] Length = 1270 Score = 1327 bits (3434), Expect = 0.0, Method: Composition-based stats. Identities = 584/1370 (42%), Positives = 803/1370 (58%), Gaps = 117/1370 (8%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R F + PD +++Q S+ F + +ER NEGL F FPIT Sbjct: 4 KQAERLNFSSVKNRPEYPDFLDIQIKSFQDFFQLETKSEERGNEGLYNTFLENFPITDTR 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q Sbjct: 64 NNFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDEEHEDFETIV-----QD 118 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +Y+G +P MT GTF I G +R+VVSQLHRSPG+ F +G LY+ R+IP +G Sbjct: 119 VYLGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKG 175 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ D +++ IDR++K+PVT+ A+G + + +IL F Sbjct: 176 SWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKY 235 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L G+KL + +L + E V Sbjct: 236 L---------------------------GRKLAARVLNTWHEDFVDEDT----------- 257 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKN 367 ++V+ E EI ++ V++++ +EEI + + I + D + + A I NTL D Sbjct: 258 -GEVVSIERNEIVLDRDTVLEKEHVEEILDAGAKTILLHKEDNQLADYAIIHNTLQKDPT 316 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L LD D Sbjct: 317 NSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLGLDIGMD 376 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 + + K+DII I+K L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ Sbjct: 377 KQVLTKQDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSTQFGVGLARMARTIR 436 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG G Sbjct: 437 ERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPG 496 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A+VN GFIETPYR V D Sbjct: 497 GLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVYAKVNNMGFIETPYRTVTD 556 Query: 608 GKVTND--VVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 GK+ + YLSA EEE IAQAN+ +D+ G EE V R G+ +V + + D Sbjct: 557 GKIDLETKPKYLSAEEEEGMLIAQANNPMDDSGKIEEERVIARMEGDFPVVEPNTVHYAD 616 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 SP Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+A++P VGTG+E VA S Sbjct: 617 VSPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRADSPIVGTGLERQVASDSRV 676 Query: 726 AIVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 I A+ G VE VDA I I+ E + Y+L+KF+++NQ+T +N +P+V Sbjct: 677 LINAEGDGEVEYVDANEITIKYDRTDEERMVSFDGDSKTYQLIKFRKTNQSTSINLKPIV 736 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD V++ ++ G +T+ G+LALGRNM VAFMPW GYNFED+++ISE++V +D+FTSI Sbjct: 737 RRGDRVKKGQVLCQGYATEAGELALGRNMKVAFMPWKGYNFEDAIVISEKVVRDDIFTSI 796 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 H++E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKG Sbjct: 797 HVDEYSLDVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKG 856 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ES TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F R DK +R+ E Sbjct: 857 ESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFARAIKDKRKRAKDKED- 915 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYP 1017 I L + D + L + +L +++ G+ A G + K + +++ Sbjct: 916 -IAALEAEYDQKFDDLKAVLVDKLFQLVNGKTAQGVKNDLGEEVLPKGKKFTLKMLNAVE 974 Query: 1018 RSQWWQF--AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075 D+ + L Y ++ L+ + + I GD++P G++++ K Sbjct: 975 DYTHLNQGTWTTDDATNVLIADLLHNYRIKENDLQGNLRREKFTISVGDELPSGIIKLAK 1034 Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135 V+VA KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQ Sbjct: 1035 VYVAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQ 1094 Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 I+ET LGWA LG+K + I D I+ L Sbjct: 1095 IYETVLGWAGQKLGRKYATPIFDGATLDQINELTD------------------------- 1129 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 ++G+P G + LYDG TG+ FD+P TVG IY Sbjct: 1130 -----QAGIP------------------------RFGHTYLYDGGTGDRFDQPATVGVIY 1160 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+L Sbjct: 1161 MLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASATLREIL 1220 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 T+KSDDV+GR + YESIV G E G PESFNVL+ E++ LGL I LE Sbjct: 1221 TVKSDDVIGRAKTYESIVKGEPMPEPGLPESFNVLMHELKGLGLDIRLEE 1270 >gi|89890192|ref|ZP_01201703.1| RNA polymerase beta subunit rpoB [Flavobacteria bacterium BBFL7] gi|89518465|gb|EAS21121.1| RNA polymerase beta subunit rpoB [Flavobacteria bacterium BBFL7] Length = 1271 Score = 1326 bits (3432), Expect = 0.0, Method: Composition-based stats. Identities = 582/1368 (42%), Positives = 800/1368 (58%), Gaps = 117/1368 (8%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R F D PDL+++Q S+ F + D+R EGL F FPIT Sbjct: 7 TERINFSTVTTKADYPDLLDIQIKSFQDFFQLETKSDKREVEGLYNTFMENFPITDTRNQ 66 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q +Y Sbjct: 67 FVLEFLDYFVDPPRYSIQECIERGLTYSVPLKSRLKLYCTDPEHEDFETIV-----QDVY 121 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ R+IP +G W Sbjct: 122 LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKGSW 178 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ D +++ IDR++K+PVT+ A+G + + +IL F L Sbjct: 179 IEFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILGIFDLAEEVKASKTGLKKYL- 237 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 G+KL + +L++ E V Sbjct: 238 --------------------------GRKLAARVLRTWHEDFVDEDT------------G 259 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTDKNKD 369 ++V+ E EI ++ V+D++ ++EI S+ + I + D+ + + A I NTL D Sbjct: 260 EVVSIERNEIVLDRDTVLDKEHIDEIMESQAKTILLHKEDNQSADYAIIHNTLQKDPTNS 319 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L LD D + Sbjct: 320 EKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLGLDIAMDKQ 379 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + KEDII IIK L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ER Sbjct: 380 VLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIRER 439 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG+ Sbjct: 440 MNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGL 499 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA+VN+ GFIETPYR V DG Sbjct: 500 SRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFAKVNSMGFIETPYRSVKDGV 559 Query: 610 VT--NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 V + YLSA EEE +IAQAN L+ G ++ V R G+ +V ++ + D + Sbjct: 560 VNLEEEPTYLSAEEEEGMHIAQANLPLNGKGKIDQDKVIARMEGDFPVVDPTEVVYADVA 619 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ +AP VGTG+E VA S I Sbjct: 620 PNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRVDAPIVGTGLERQVATDSRVLI 679 Query: 728 VAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G V VDA RI I+ Y L+KF+++NQ T + +P+VK Sbjct: 680 NAEGDGEVTYVDAQRISIKYDRTDREIAISFEPEETTYNLIKFRKTNQGTSITLKPIVKK 739 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD V R ++ G +T+ G+LALGRNM VAFMPW GYNFED+++ISE++V ED+FTSIH+ Sbjct: 740 GDRVNRGQVLCQGYATEAGELALGRNMKVAFMPWKGYNFEDAIVISEKVVREDIFTSIHV 799 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E+ + RDTKLG EE+T DIPNVSEE ++DE G+I +GAEV PGDIL+GKITPKGES Sbjct: 800 DEYSLDVRDTKLGNEELTPDIPNVSEEATADLDEQGMIRIGAEVKPGDILIGKITPKGES 859 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R K++R + ++E I Sbjct: 860 DPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSRA--VKDKRKRAQDKEDI 917 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 L + + L + +L EI+ G+ + G + K + ++ Sbjct: 918 AKLEQAYQSKFDNLQERLIEKLFEIVSGKTSQGVFNDLGEEVLPKGKKYTLKMLHSVDDY 977 Query: 1020 QWW--QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 + + L Y+ ++ L+ + + I GD++P G++++ KV+ Sbjct: 978 THLVSGTWTTSKDTNEMIADLLHNYKIKENDLQGSLRREKFTISVGDELPAGIIKLAKVY 1037 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ Sbjct: 1038 IAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIY 1097 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 ET LGWA LGK + I D I+ A Sbjct: 1098 ETVLGWAGQKLGKTFATPIFDGATLDQIN------------------------------A 1127 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 ++G+P G + LYDG TG+ FD+P TVG IYML Sbjct: 1128 YTDEAGIP------------------------RFGHTYLYDGGTGDRFDQPATVGVIYML 1163 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+ Sbjct: 1164 KLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTV 1223 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 KSDDV+GR + YE+IV G E G PESFNVL+ E++ LGL + LE+ Sbjct: 1224 KSDDVIGRAKTYEAIVKGEPMPEPGLPESFNVLMHELKGLGLDLRLED 1271 >gi|45439264|gb|AAS64308.1| putative RNA polymerase beta subunit [Flavobacterium psychrophilum] Length = 1270 Score = 1326 bits (3431), Expect = 0.0, Method: Composition-based stats. Identities = 584/1368 (42%), Positives = 810/1368 (59%), Gaps = 117/1368 (8%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R F I PD ++VQ S+ F + DER NEGL F FPIT Sbjct: 6 TERLNFASTKNIPAYPDFLDVQVKSFQDFFQLETKSDERGNEGLYNTFMENFPITDTRNN 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q +Y Sbjct: 66 FVLEFIDYFVDPPRYTIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QDVY 120 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ R+IP +G W Sbjct: 121 LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKGSW 177 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ D +++ IDR++K+PVT+ A+G S+ +IL F + Sbjct: 178 IEFATDINSVMYAYIDRKKKLPVTTLFRAIGFQSDKDILEIFDLAEEIKVSKSGLKKYI- 236 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 G+KL + +L + E V Sbjct: 237 --------------------------GRKLAARVLNTWHEDFVDEDT------------G 258 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKD 369 ++V+ E EI ++ ++D+ ++EEI S ++ I + D+ V + + I NTL D Sbjct: 259 EVVSIERNEIILDRDTILDKDNVEEIVESNVKSILLHKEDNNVVDYSIIHNTLQKDPTNS 318 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 +A+ IYR +R + A + + LFF +Y+L VGR ++N +L LDTP + + Sbjct: 319 EIEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRINKKLGLDTPMEKQ 378 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + KEDII I+K L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ER Sbjct: 379 VLTKEDIITIVKYLIELINAKADIDDIDHLSNRRVRTVGEQLSQQFGVGLARMVRTIRER 438 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG+ Sbjct: 439 MNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGL 498 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A+VN GFIETPYRKV +G Sbjct: 499 SRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAKVNGMGFIETPYRKVTNGV 558 Query: 610 V--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 V T+ YLSA EEE IAQAN +DE+G T + V R G+ ++ + + D + Sbjct: 559 VDLTSVPKYLSAEEEEGMLIAQANIQMDENGKITADNVIARQEGDFPVIDPTAVHYTDVA 618 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPL++ EAP VGTG+E VA S I Sbjct: 619 PNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLIRPEAPIVGTGLERQVASDSRVLI 678 Query: 728 VAKRAGIVEQVDAIRIVIRSVE---GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ AG+VE VDA I I+ S Y+L+KF+++NQ T +N +P+V+ Sbjct: 679 NAEGAGVVEYVDADMITIKYDRTDAERAVSFESDEKTYKLIKFRKTNQGTSINLKPIVRK 738 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD+V + ++ +G +T G+LALGRN+ VAFMPW GYNFED+++ISE++V +D+FTSIH+ Sbjct: 739 GDKVIKGQVLCEGYATQNGELALGRNLKVAFMPWKGYNFEDAIVISEKVVRDDIFTSIHV 798 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +++ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKGES Sbjct: 799 DDYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGES 858 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F R K++R + +++ + Sbjct: 859 DPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVLDKKLFARA--VKDKRKRTQDKDAL 916 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 L + + + V L + +L I+ G+ + G + K + ++ Sbjct: 917 SDLEMEFEVKFVELKDKLVDKLFTIVNGKTSQGVMNDLGEEVLPKGKKYTQKMLYAVEDF 976 Query: 1020 QWWQ--FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 V D++ + V L Y+ + L+ + + I GD++P G+L++ KV+ Sbjct: 977 AHLTRGQWVADDETNKMVNDLIHNYKIKLNDLQGALRREKFTITVGDELPAGILKLAKVY 1036 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ Sbjct: 1037 IAKKRKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIY 1096 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 ET LGWA LG+K + I D + I+ + Sbjct: 1097 ETVLGWAGQNLGRKYATPIFDGASLDQINAITD--------------------------- 1129 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 ++GVP G + LYDG TGE F + TVG IYML Sbjct: 1130 ---EAGVP------------------------RFGHTHLYDGGTGERFHQAATVGVIYML 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+ Sbjct: 1163 KLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTV 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 KSDDV+GR + YE+IV G E G PESFNVL+ E++ LGL I LE Sbjct: 1223 KSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE 1270 >gi|256420754|ref|YP_003121407.1| DNA-directed RNA polymerase, beta subunit [Chitinophaga pinensis DSM 2588] gi|256035662|gb|ACU59206.1| DNA-directed RNA polymerase, beta subunit [Chitinophaga pinensis DSM 2588] Length = 1269 Score = 1325 bits (3430), Expect = 0.0, Method: Composition-based stats. Identities = 588/1363 (43%), Positives = 813/1363 (59%), Gaps = 114/1363 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R FGK ++ + PDL+ +Q S+ F + PD+R NEGL FK FPIT Sbjct: 10 ERVNFGKIKQVTETPDLLAIQIQSFKDFFQLETTPDKRNNEGLFKVFKENFPITDTRNIF 69 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LEF+ Y DPP++ +++C+ R LTY+VPLK LRL D + + Q +++ Sbjct: 70 NLEFLDYFVDPPRYTIEECIERGLTYSVPLKAKLRLSCNDEEHVDFQTIV-----QDVFL 124 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++P MT GTFVI G +R+VVSQLHRSPG+ F +G +Y+ R+IP +G WM Sbjct: 125 GNIPYMTPRGTFVINGAERVVVSQLHRSPGVFFGQS---IHPNGTKIYSARVIPFKGAWM 181 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K PVT+ L A+G +++ +IL F Sbjct: 182 EFATDINNVMYAYIDRKKKFPVTTLLRAIGYETDKDILQLFGMADEVKADKKSLEK---- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 +GKKL + +L+S E V + Sbjct: 238 -----------------------YAGKKLGARVLRSWVEDFVDEDT------------GE 262 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 +V+ E EI +E ++DE ++E I ++ + + + + + I NTL D + Sbjct: 263 VVSIERNEIMLERDSILDEANIETIVDMGVKSVFVQKEEVSGDFSIIYNTLNKDTSNSEL 322 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D A + + LFF +YDL VGR K+N +L L TP +++ + Sbjct: 323 EAVQHIYRQLRGADAPDDETARGIIDKLFFSDKRYDLGDVGRYKINRKLGLPTPLNMKVL 382 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KEDIIAIIK LV L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ER++ Sbjct: 383 TKEDIIAIIKYLVQLTNSKAEIDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTIRERMN 442 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINA+ + S + FF +SQLSQ + N LS ITH RR+SALG GG++R Sbjct: 443 VRDNEVFTPVDLINARTLSSVINSFFGTSQLSQFLDQTNPLSEITHKRRISALGPGGLSR 502 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH +HYGR+C ET EG NIGL+S+L A+VN GFIETPYRKV +GKV Sbjct: 503 ERAGFEVRDVHYSHYGRLCTIETPEGPNIGLISTLCVHAKVNDMGFIETPYRKVNEGKVD 562 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 ++V +LSA EE++ IAQAN+ LDE+G F + V R G+ ++ RE+++++D +P Q Sbjct: 563 MDNVRFLSAEEEDSVKIAQANAPLDEEGHFVNDKVKSRETGDFPILDREEVEYMDVAPNQ 622 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 +V ++ASLIPFLE+DD+NR LMG NMQRQAVPL+ + P VGTG+E A+ S I ++ Sbjct: 623 IVGLSASLIPFLEHDDANRALMGSNMQRQAVPLINPQVPIVGTGLEGKAARDSRLQITSE 682 Query: 731 RAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 G+VE VDA I +R L + IY+L KF ++NQ+TC+N RP VK G + Sbjct: 683 GKGVVEFVDANEIHVRYERDEMQKLVSFEDDLKIYQLTKFVKTNQSTCINLRPAVKKGQQ 742 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 + D + +G +T G+LALGRNM VAFMPW GYNFED+++ISER+ ED+FTSIHI+E+ Sbjct: 743 LVFGDFLTEGYATRGGELALGRNMKVAFMPWKGYNFEDAIVISERVGREDLFTSIHIDEY 802 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E+ RDTKLG EE+T DIPNVSEE K++D+ GII VGA + GDIL+GKITP+GES + Sbjct: 803 ELEVRDTKLGEEELTPDIPNVSEEATKDLDQNGIIRVGAHIKEGDILIGKITPRGESDPS 862 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFG+KA D +D SL+ P G V+D ++F+R K++ S + E+ +E L Sbjct: 863 PEEKLLRAIFGDKASDAKDASLKAPPSTEGVVIDKKLFSRA--KKDKNSKTREKAALEKL 920 Query: 968 ARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 + + L + +L+ +L G G K + SS ++ Sbjct: 921 EKVHQKNEEDLLEVLMGKLLTLLKDKTSQGITNTYGEVLISKGSKFSSKNLANIDFQNVN 980 Query: 1023 QF-AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 DE + +L Y + R+K + I GD++P GVL++ KV++A K Sbjct: 981 PLGWTTDEVTNDQINTLLHNYNIKYNEELGRYKREKFNISIGDELPAGVLKLAKVYLASK 1040 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R ++ GDKMAGRHGNKGIV++I+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ET L Sbjct: 1041 RKLKVGDKMAGRHGNKGIVAKIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNLGQIYETVL 1100 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 GWA + LG + + I D +I+ Sbjct: 1101 GWAGLKLGVRFATPIFDGATTEEIAEYIDEAGL--------------------------- 1133 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 P F G + LYDG TGE F + TVG IYMLKL+H Sbjct: 1134 -------PSF--------------------GHTYLYDGETGERFHQKATVGVIYMLKLSH 1166 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 MV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ +LQE+LTIKSDD Sbjct: 1167 MVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASNILQELLTIKSDD 1226 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 +VGR + YESIV G++ + G PESFNVL+ E++ LGL + + Sbjct: 1227 IVGRAKAYESIVKGDNIPKAGVPESFNVLIHELRGLGLDLKFD 1269 >gi|160888406|ref|ZP_02069409.1| hypothetical protein BACUNI_00819 [Bacteroides uniformis ATCC 8492] gi|270294759|ref|ZP_06200960.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. D20] gi|317477758|ref|ZP_07936951.1| DNA-directed RNA polymerase [Bacteroides sp. 4_1_36] gi|156862083|gb|EDO55514.1| hypothetical protein BACUNI_00819 [Bacteroides uniformis ATCC 8492] gi|270274006|gb|EFA19867.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. D20] gi|316906103|gb|EFV27864.1| DNA-directed RNA polymerase [Bacteroides sp. 4_1_36] Length = 1270 Score = 1325 bits (3430), Expect = 0.0, Method: Composition-based stats. Identities = 585/1366 (42%), Positives = 817/1366 (59%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFKDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +D+C+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDECIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKK---- 235 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK+ E V + Sbjct: 236 -----------------------MVGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ VI+ + ++ I S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVVIDRETVIEPEHVDIILESGVQNILVHKEEPNQSDYSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINRKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINELGFIETPYRKVAEGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 +VYL+A EEE + IAQ N+ L++DG+F + V R + +VP +++ +D S Sbjct: 561 DLSDEGLVYLTAEEEEAKIIAQGNAPLNDDGTFVRDKVKSRQDADYPVVPPSEVELMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLLK+EAP VGTG+E +A+ S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKSEAPIVGTGIERQLARDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+VE VDA I I R+ E + + Y + K++R+NQN ++ RP+ + Sbjct: 681 TAEGDGVVEFVDATTIRILYDRTEEEEFVSFEPALKEYNIPKWRRTNQNMTIDLRPICEK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V I+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVTAGQILTEGYSTEDGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+ R+F+R + K S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIGKRLFSR--VVKTRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 + + D + L + + ++L+++ G G K S+ S+ + Sbjct: 919 PKIDDEFDAKIGDLKKVLINKLLKLTENYTSEGVKDYMGADIISKGARFSASDFSDLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 +DE + +L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 AVQLSNWTKDEHTNGLIRALVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D + D++ Sbjct: 1099 AVLGRAGKNLGVKFATPIFDGASLDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P G++ LYDG TGE F++ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYGKTTLYDGGTGEAFEQQATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPAPGIPESLNVLLHELRGLGLSINLE 1270 >gi|319953899|ref|YP_004165166.1| DNA-directed RNA polymerase subunit beta [Cellulophaga algicola DSM 14237] gi|319422559|gb|ADV49668.1| DNA-directed RNA polymerase subunit beta [Cellulophaga algicola DSM 14237] Length = 1269 Score = 1324 bits (3427), Expect = 0.0, Method: Composition-based stats. Identities = 585/1367 (42%), Positives = 816/1367 (59%), Gaps = 116/1367 (8%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R F I + PD +++Q S+ F + DER +EGL F+ FPIT Sbjct: 6 TERINFASAKNIPNYPDFLDIQVKSFQDFFQLETKSDERGDEGLYNTFQENFPITDTRNQ 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 +LEF+ Y DPP++ + +C+ R LT++VPLK L+L D + + Q +Y Sbjct: 66 FVLEFLDYFIDPPRYSIQECIERGLTHSVPLKARLKLYCTDPEHEDFETIV-----QDVY 120 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ R+IP +G W Sbjct: 121 LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKGSW 177 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ D +++ IDR++K+PVT+ A+G +S+ +IL F L Sbjct: 178 IEFATDINGVMYAYIDRKKKLPVTTLFRAIGFESDKDILEIFDLSEEVKVSVAGLKKVL- 236 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 G+KL + +L + E V Sbjct: 237 --------------------------GRKLAARVLNTWHEDFVDEDT------------G 258 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKD 369 ++V+ E EI ++ +++++ +E+I ++++ + + + ++ I NTL D Sbjct: 259 EVVSIERNEIVLDRDTILEKEHIEQIVDADVKTVLLHKESAAQSDYGIIHNTLQKDPTNS 318 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L LD D + Sbjct: 319 EKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLGLDIGMDKQ 378 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + KEDII IIK L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ER Sbjct: 379 VLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIRER 438 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG+ Sbjct: 439 MNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGL 498 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVH THYGR+CP ET EG NIGL+SSL F++VN+ GF+ETPYRKV +GK Sbjct: 499 SRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFSKVNSMGFLETPYRKVENGK 558 Query: 610 V-TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 V + YLSA EEE IAQAN +DE+G+ T E V R G+ +V +I + D +P Sbjct: 559 VDIQNFGYLSAEEEEGMKIAQANIPMDEEGNITAEKVIAREEGDFPVVDPSEIQYTDVAP 618 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLLK +AP VGTG+E VA S I Sbjct: 619 NQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLKPQAPIVGTGLERQVASDSRVLIN 678 Query: 729 AKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G+++ VD++ I I+ E L Y L+KF+++NQ T +N +P+V+ G Sbjct: 679 AEGDGVIQYVDSLMITIKYDRTEEERLVSFEDDSKTYELVKFRKTNQGTSINLKPIVRKG 738 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 D+VR+ ++ +G +T+ G+LALGRN+ VAFMPW GYNFED+++ISE++V ED+FTSIH++ Sbjct: 739 DKVRKGQVLCEGYATENGELALGRNLKVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVD 798 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKGES Sbjct: 799 EYSLEVRDTKLGAEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESD 858 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R K++R S ++E I Sbjct: 859 PTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSR--SVKDKRKRSEDKEAIS 916 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRSQ 1020 L + + + L + +L ++ G+ + G + K + +++ Sbjct: 917 NLELEYEVKFQQLKDVLIEKLFNLVNGKTSQGVLNDLGEEVLPKGKKYTMKMLNAVDDFA 976 Query: 1021 WW--QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+ V L Y+ + L+ + I GD++P G++++ KV+V Sbjct: 977 HLVGGLWTTDKDNNNLVTDLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKVYV 1036 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR ++ GDKMAGRHGNKGIVSRI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+E Sbjct: 1037 AKKRKLKVGDKMAGRHGNKGIVSRIVRHEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYE 1096 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 T LGWA + LGKK + I D + I+ A Sbjct: 1097 TVLGWAGLKLGKKYATPIFDGASLDQIN------------------------------AY 1126 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 ++G+P G + LYDG TG+ FD+P TVG IYMLK Sbjct: 1127 TDEAGIP------------------------RFGHTYLYDGGTGQRFDQPATVGVIYMLK 1162 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+K Sbjct: 1163 LGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASATLREILTVK 1222 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 SDDVVGR + YE+IV G E G PESFNVL+ E++ LGL I LE Sbjct: 1223 SDDVVGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE 1269 >gi|319900917|ref|YP_004160645.1| DNA-directed RNA polymerase subunit beta [Bacteroides helcogenes P 36-108] gi|319415948|gb|ADV43059.1| DNA-directed RNA polymerase subunit beta [Bacteroides helcogenes P 36-108] Length = 1270 Score = 1323 bits (3424), Expect = 0.0, Method: Composition-based stats. Identities = 584/1366 (42%), Positives = 823/1366 (60%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFKDFLQLDTPPEKRRNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +D+C+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDECIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + I G+KL + +LK+ E V + Sbjct: 221 -------NLAEDVKVNKTNLKKI-VGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ VI+ + ++ I S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVVIDRETVIESEHVDIILESGVQNILVHKEEPNQSDYSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINELGFIETPYRKVENGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 +VYL+A EEE + IAQ N+ L++DG+F + V R + +V ++++ +D S Sbjct: 561 DLSDEGLVYLTAEEEEAKIIAQGNAPLNDDGTFIRDKVKARQDADYPVVTPDEVELMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLLK+EAP VGTG+E +A+ S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKSEAPVVGTGIERQLARDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+++ VDA I I R+ E + + Y + K++R+NQN ++ RP+ + Sbjct: 681 TAEGDGVIDFVDATTIRILYDRTEEEEFVSFEPALKEYNIPKWRRTNQNMTIDLRPICEK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V I+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TSIH+ Sbjct: 741 GQRVTAGQILTEGYSTEDGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSIHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G ++ R+F+R + K S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVIIGKRLFSR--VIKTRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 + + D + L + + ++L+++ G G K S+ S+ + Sbjct: 919 PKIDDEFDGKIAELKKILVNKLLKLTENYTSEGVKDYMGADVISKGAKFSASDFSDLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 +DE + +L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 AIQLSNWTKDEHTNGLIRALVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D + D++ Sbjct: 1099 AVLGRAGKKLGVKFATPIFDGASLDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P G++ LYDG TGE F++ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYGKTTLYDGGTGEAFEQQATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSINLE 1270 >gi|228472584|ref|ZP_04057344.1| DNA-directed RNA polymerase, beta subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275997|gb|EEK14753.1| DNA-directed RNA polymerase, beta subunit [Capnocytophaga gingivalis ATCC 33624] Length = 1269 Score = 1323 bits (3423), Expect = 0.0, Method: Composition-based stats. Identities = 576/1365 (42%), Positives = 811/1365 (59%), Gaps = 116/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + D PD +++Q S+ F M D R EGL + FK FPIT + Sbjct: 8 RINFASTKHVPDYPDFLDIQVKSFQDFFQMETKSDARSGEGLYSTFKENFPITDTRNQFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ V++C+ R LTY+VPLK L+L D + + Q +Y+G Sbjct: 68 LEFLDYFIDPPRYSVEECIERGLTYSVPLKARLKLFCTDPEHEDFETIV-----QDVYLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT GTF+I G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W++ Sbjct: 123 TIPYMTGSGTFIINGAERVVVSQLHRSPGVFFGQS---YHANGTKLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ A+G + + +IL F L Sbjct: 180 FTTDINNVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKYL--- 236 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G++L + +L + E V ++ Sbjct: 237 ------------------------GRRLAARVLNTWHEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTDKNKDRK 371 V+ E EI ++ +++++ +++I S + I + D + + I NTL D K Sbjct: 261 VSIERNEIILDRDTILEKEHIDQIVESNAKTILLHKEDERSVDYNIIHNTLQKDPTNSEK 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R + A + + LFF +Y+L VGR +MN +L LD P + + + Sbjct: 321 EAVEHIYRQLRNAEPPDEETARDIIDKLFFSDQRYNLGDVGRYRMNKKLGLDIPMEKQVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KEDII I+K L++L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I+ER++ Sbjct: 381 TKEDIITIVKYLIELINSKAEVDDIDHLSNRRVRTVGEQLAAQFGVGLARMARTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF +SQLSQ + N L+ ITH RRLSALG GG++R Sbjct: 441 VRDNEVFTPLDLINAKTLSSVINSFFGTSQLSQFMDQTNPLAEITHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A+VN GFIETPYRKV +GK+ Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVYAKVNNMGFIETPYRKVENGKIK 560 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 ++++Y+SA EEE I QAN +D+ G+ +E + + G+ ++ RE++D+ID +P Q Sbjct: 561 LDELIYMSAEEEEGLKIPQANIQVDDQGNILDERLVVKEDGDFPVISREEVDYIDVAPNQ 620 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 + SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ EAP VGTG+E V S I A+ Sbjct: 621 IASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAPIVGTGLEKRVVTDSRVLINAE 680 Query: 731 RAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 R G V VDA +IVI+ + L S + Y L+KF+R+NQ TC+N +P+V+ GD Sbjct: 681 REGTVTYVDADKIVIKYDRTEDEILVSFDSELTTYDLIKFRRTNQGTCINLKPIVRKGDR 740 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V + ++ G +T+ G+LALGRNM VAFMPW GYNFED+++ISER++ ED+FTSIHI+E+ Sbjct: 741 VHKGQVLCQGYATEQGELALGRNMKVAFMPWKGYNFEDAIVISERVIREDIFTSIHIDEY 800 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 + RDTKLG EE+T DIPNVSE+ K++DE GI+ +GA + PGDIL+GK+TPKGES T Sbjct: 801 TLDVRDTKLGVEELTNDIPNVSEDATKDLDENGIVRIGANIKPGDILIGKVTPKGESDPT 860 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFG+KA DV+D SL+ + G V+ ++F+R K +R+ E++++ L Sbjct: 861 PEEKLLRAIFGDKAGDVKDASLKASPSLEGVVIGKKLFSRAVKTKQKRAK--EKDEMAAL 918 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRSQ-- 1020 + + L + +L ++ G+ + G + K + + E Sbjct: 919 DAAFNAKAEALKDVLLEKLFSLVNGKTSQGVFNDLGEEMIPKGRKHTQRGLKEIEDYTHL 978 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 DE + L Y+ + L+ + + GD++P G++++ K+++A Sbjct: 979 LSGGWTTDEHTNELINDLIHNYKIKLNDLQGMLRRDKFTLTVGDELPAGIMKLAKIYIAK 1038 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ET Sbjct: 1039 KRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETV 1098 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA LGKK + I D + I+ + Sbjct: 1099 LGWAGQKLGKKFATPIFDGASLEQITEYTNEAG--------------------------- 1131 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 P F G + LYDG TGE FD+ TVG IYM+KL Sbjct: 1132 -------VPAF--------------------GHTYLYDGGTGERFDQKATVGVIYMIKLG 1164 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 HM+ DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+KSD Sbjct: 1165 HMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTVKSD 1224 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV+GR R YE+IV G+ E G PESFNVL+ E++ LGL I LE+ Sbjct: 1225 DVIGRARTYEAIVHGDTMPEPGLPESFNVLMHELKGLGLDIRLED 1269 >gi|255011635|ref|ZP_05283761.1| DNA-directed RNA polymerase subunit beta [Bacteroides fragilis 3_1_12] gi|313149470|ref|ZP_07811663.1| RNA polymerase subunit beta [Bacteroides fragilis 3_1_12] gi|313138237|gb|EFR55597.1| RNA polymerase subunit beta [Bacteroides fragilis 3_1_12] Length = 1270 Score = 1323 bits (3423), Expect = 0.0, Method: Composition-based stats. Identities = 581/1366 (42%), Positives = 822/1366 (60%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R EGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +DDC+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + + G+KL + +LK+ E V + Sbjct: 221 -------NLAEDVKVNKTNLKKV-VGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ VI+ + ++EI S +++I I + ++ + I NTL D + Sbjct: 261 VVSIERNEVIIDRETVIEPEHIDEIIDSGVQNILIHKEEPNQSDYSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLMTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINDLGFIETPYRKVDNGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 N +VYL+A EEE + IAQ N+ L++DG+F V R + +V +++ +D + Sbjct: 561 DLSENGLVYLTAEEEEAKIIAQGNAPLNDDGTFIRNKVKSRQDADYPVVEPSEVELMDVA 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL++EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSEAPIVGTGIERQLVRDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+++ VDA I I R+ + + + YR+ KF+++NQN ++ RP+ Sbjct: 681 AAEGDGVIDFVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRKTNQNMTIDLRPICNK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD V + I+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GDRVTKGQILTEGYSTENGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIQPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G ++D ++F+R + KN S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVIIDKKLFSR--VIKNRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 + + + + L R + +LM + G+ + G + K + S+ + Sbjct: 919 PKIDDEFESKVADLKRILVKKLMALTEGKVSQGVKDYLGAEVIAKGSKFSASDFDSLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+ + L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 AIQLSDWTNDDHANGMIRDLILNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D++ Sbjct: 1099 AVLGRAGKNLGVKFATPIFDGATLDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ L DG TGE FD+P TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLCDGGTGERFDQPATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++ +GA+++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEGFGASHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G + G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE 1270 >gi|170696796|ref|ZP_02887904.1| DNA-directed RNA polymerase, beta subunit [Burkholderia graminis C4D1M] gi|170138297|gb|EDT06517.1| DNA-directed RNA polymerase, beta subunit [Burkholderia graminis C4D1M] Length = 1279 Score = 1323 bits (3423), Expect = 0.0, Method: Composition-based stats. Identities = 621/1295 (47%), Positives = 858/1295 (66%), Gaps = 60/1295 (4%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K P + +P L+ Q S+ FL + +R EGLQAAF SV Sbjct: 1 MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTPSTQRKPEGLQAAFTSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFVSY PP F++ +C R LTY L+ +RL++ D + + + Sbjct: 61 FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS-KPVV 119 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGI----------------------QRIVVSQLHRS 160 K++K GT G R SQLHRS Sbjct: 120 KEVK---------------GT----GSVHGRNSAHDADGFVRHQRYGACDR---SQLHRS 157 Query: 161 PGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMA 220 PG+ F+HDKG+ SGKLL++ RIIP +G W+D EFD KD+++ R+DRRRK+PVT L A Sbjct: 158 PGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKA 217 Query: 221 LGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKL 280 +G+ E+IL+ F+ ++ + L G + D G +++ K++ Sbjct: 218 IGLTPEQILANFFVFDNFTLMPEGAQMEFVPERL-RGEVARFDITD-RDGNVIVQKDKRI 275 Query: 281 TSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSE 340 + ++ L KF+ + D L G +A+++V+G+TGE+ A D I E LE++ S+ Sbjct: 276 NAKHIRDLDNAKTKFISVPEDYLLGRVLAKNVVDGDTGEVIANANDEITETVLEKLRESK 335 Query: 341 IRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLF 400 I+DI LY + ++ YI +TL D+ D+ A + IYR+MRPG+ T E++FN LF Sbjct: 336 IKDIQTLYTNDLDQGPYISSTLRIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLF 395 Query: 401 FDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + D YDLS VGR+K N R+ D ++ +DI+A IKILV+LRNGKG +DDID+LG Sbjct: 396 YSEDAYDLSKVGRMKFNRRVGRDEIIGPMTLQDDDILATIKILVELRNGKGEVDDIDHLG 455 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVR VGE+ +NQ+R GL+R+ER++KER+ + +++MP DLIN+KP+ SA+ EFF SS Sbjct: 456 NRRVRCVGELAENQFRAGLVRVERAVKERLGQAESENLMPHDLINSKPISSAIREFFGSS 515 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 516 QLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 575 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL +A +N YGF+ETPYRKV D KVT+ + YLSA+EE IAQAN+++ EDGS Sbjct: 576 GLINSLALYAHLNEYGFLETPYRKVVDSKVTDQIDYLSAIEEGRYVIAQANAAVAEDGSL 635 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 T+ELV R AGE ++V ++I ++D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 636 TDELVSSREAGETLMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQA 695 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E VGTG+E VA SG + A R G+V+ VDA RIVIR + + GVD Sbjct: 696 VPCLRPEKAVVGTGIERTVAVDSGTTVQAFRGGVVDYVDAGRIVIRVNDEEAVAGDVGVD 755 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNT +NQRP+VKVGD+V R D++ADG STDLG+LALG+NMLVAFMPW+G Sbjct: 756 IYNLIKYTRSNQNTNINQRPIVKVGDKVSRGDVLADGASTDLGELALGQNMLVAFMPWNG 815 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+LISE++V++D +TSIHIEE V+ARDTKLGPEEITRDI N++E L +DE G Sbjct: 816 YNFEDSILISEKVVADDRYTSIHIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESG 875 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+ Sbjct: 876 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVI 935 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ + ++++ D +D+ I++ + + RL +L G+ A GPK Sbjct: 936 DVQVFTREGIQRDKRAQQIIDDELKRYRLDLNDQLRIVEGDAFQRLARMLTGKVANGGPK 995 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 K T + + + W+ + DE+ +E++K E + + F+ K +K+ Sbjct: 996 KLAKGTKIEQAYLEDLDHYHWFDIRLADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKL 1055 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GD++PPGVL++VKV++A+KR +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+ Sbjct: 1056 TQGDELPPGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADV 1115 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMNVGQ+ E HLGWA GLG +I ++ + I+ LR FL K+ Sbjct: 1116 VLNPLGVPSRMNVGQVLEVHLGWAAKGLGWRIGEML---QRQAKIAELREFLTKIYNESG 1172 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ------- 1233 E++ + D+ ++ +A+ + GVP +TPVFDGA EE ++ L +A D+ + Sbjct: 1173 RAEELDSFTDEEIVELAKNLREGVPFATPVFDGATEEEMSRALDLAFPDDIAKNLGMTPS 1232 Query: 1234 ---SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 LYDG TGE F+R VTVGY++ LKL+H+V D Sbjct: 1233 KNQVRLYDGRTGEMFERSVTVGYMHYLKLHHLVDD 1267 >gi|329962259|ref|ZP_08300265.1| DNA-directed RNA polymerase, beta subunit [Bacteroides fluxus YIT 12057] gi|328530367|gb|EGF57244.1| DNA-directed RNA polymerase, beta subunit [Bacteroides fluxus YIT 12057] Length = 1270 Score = 1322 bits (3422), Expect = 0.0, Method: Composition-based stats. Identities = 585/1366 (42%), Positives = 822/1366 (60%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFKDFLQLDTPPEKRRNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +D+C+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDECIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + I G+KL + +LK+ E V + Sbjct: 221 -------NLAEDVKVNKTNLKKI-VGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ VI+ + ++ I S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVVIDRETVIEPEHVDIILESGVQNILVHKEEPNQSDYSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINRKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINELGFIETPYRKVANGKV 560 Query: 611 T---NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 +VYL+A EEE + IAQ N+ L++DG+F + V R + +V ++++ +D S Sbjct: 561 DLSGEGLVYLTAEEEEAKIIAQGNAPLNDDGTFVRDKVKARQDADYPVVTPDEVELMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLLK+EAP VGTG+E +A+ S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKSEAPVVGTGIERQLARDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+VE VDA I I E + S + Y + K++R+NQN ++ RP+ + Sbjct: 681 TAEGDGVVEFVDATTIRILYDRTEEEEFVSFESALKEYSIPKWRRTNQNMTIDLRPICEK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V I+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVTAGQILTEGYSTEDGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G ++ R+F+R + K S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVIIGKRLFSR--VIKTRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 + + D + L + + ++L+++ G G K S+ S+ + Sbjct: 919 PKIDDEFDAKVGELKKVLVNKLLKLTENYTSEGVKDYMGADVISKGAKFSASDFSDLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 +DE + +L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 AIQLSNWTKDEHTNGLIRALVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D + D++ Sbjct: 1099 AVLGRAGKKLGVKFATPIFDGASLDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P G++ LYDG TGE F++ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYGKTTLYDGGTGEAFEQQATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPAPGIPESLNVLLHELRGLGLSINLE 1270 >gi|91215208|ref|ZP_01252180.1| DNA-directed RNA polymerase beta subunit [Psychroflexus torquis ATCC 700755] gi|91186813|gb|EAS73184.1| DNA-directed RNA polymerase beta subunit [Psychroflexus torquis ATCC 700755] Length = 1270 Score = 1322 bits (3422), Expect = 0.0, Method: Composition-based stats. Identities = 582/1369 (42%), Positives = 814/1369 (59%), Gaps = 117/1369 (8%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R F D PD +++Q S+ F + P+ER NEGL FK FPIT Sbjct: 5 HNERISFSSVQNKPDYPDFLDIQVKSFQDFFQLETKPEERSNEGLYNTFKENFPITDTRN 64 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q + Sbjct: 65 QFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QDV 119 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ R+IP +G Sbjct: 120 YLGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKGS 176 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPL 249 W++ D +++ IDR++K+PVT+ A+G + + +IL F L Sbjct: 177 WIEFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKYL 236 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 G+KL + +L + E V Sbjct: 237 ---------------------------GRKLAARVLNTWYEDFVDEDT------------ 257 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTDKNK 368 ++V+ E EI ++ V+++ +EEI + + I + +++ + A I NTL D Sbjct: 258 GEVVSIERNEIVLDRDTVLEKDHIEEILETGSKTILLHKEENLTGDYAIIYNTLQKDPTN 317 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L L+ D Sbjct: 318 SEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLGLNISMDS 377 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + + K DII IIK L++L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I+E Sbjct: 378 KVLTKLDIITIIKYLIELVNSKAEVDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIRE 437 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R++ D + P DLINAK + S + FF ++QLSQ + N L+ +T+ RRLSALG GG Sbjct: 438 RMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAELTNKRRLSALGPGG 497 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVH THYGR+CP ET EG NIGL+SS++ + +VN+ GFIETPYRKV +G Sbjct: 498 LSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSMSVYGKVNSMGFIETPYRKVENG 557 Query: 609 KV--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 K+ +D +YLSA EEEN+ IAQAN + EDG+ T E V R G+ +V + +D+ID Sbjct: 558 KIDFKSDPLYLSAEEEENKLIAQANIPISEDGAITSERVIARMEGDFPVVDPKDVDYIDV 617 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQA+PLL+ +AP VGTG+E VA+ S Sbjct: 618 APNQISSISASLIPFLEHDDANRALMGSNMMRQALPLLRVDAPIVGTGLERRVAQDSRVL 677 Query: 727 IVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 I A+ G V+ VDA +I+I L Y L+KF+++NQ + +N +P+V+ Sbjct: 678 INAEGEGRVQYVDARKIIIDYDRTENERLVSFDEDHKTYNLIKFRKTNQGSTINLKPIVR 737 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 VGD V + ++ +G +TD G+LALGRNM VAFMPW GYNFED+++ISER+V +D+ TS+H Sbjct: 738 VGDRVTKGQVLCEGYATDNGELALGRNMKVAFMPWKGYNFEDAIVISERVVKDDILTSVH 797 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 I+E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAE+ PGDIL+GKITPKGE Sbjct: 798 IDEYSLEVRDTKLGNEELTSDIPNVSEEATKDLDEHGMIRIGAEIKPGDILIGKITPKGE 857 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 S TPEEKLLRAIFG+KA DV+D SL+ ++G V+D ++F R K++R + ++++ Sbjct: 858 SDPTPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVIDKKLFTRA--VKDKRKRAQDKQE 915 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPR 1018 I+ L + + L + +L I+ G+ A G K + +++ Sbjct: 916 IDALEGNFQIKFEDLRNRLIDKLFGIVGGKTAQGVQNDLGEDTLPKGKKYTLKMLNSVED 975 Query: 1019 SQWWQF--AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 D+ V L Y+ ++ L+ + + I GD++P G+L++ K+ Sbjct: 976 FSHLTKGTWTTDKGTNALVADLLHNYKIKQNDLQGNLRREKFTITVGDELPSGILKLAKI 1035 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 +VA KR ++ GDKMAGRHGNKGIV++I+ EDMPFL DGTPVDIVLNPLGVPSRMN+GQI Sbjct: 1036 YVAKKRKLKVGDKMAGRHGNKGIVAKIVREEDMPFLDDGTPVDIVLNPLGVPSRMNIGQI 1095 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 +ET LGWA LGKK + I D I+ L Sbjct: 1096 YETVLGWAGQKLGKKFATPIFDGATLDQINELTD-------------------------- 1129 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 ++G+P G + L+DG TGE FD+P TVG IYM Sbjct: 1130 ----EAGIP------------------------RFGHTYLFDGGTGERFDQPATVGVIYM 1161 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL HM+ DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT Sbjct: 1162 LKLGHMIEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASATLREILT 1221 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 +KSDDVVGR + YE+IV G E G PESFNVL+ E++ LGL I LE Sbjct: 1222 VKSDDVVGRAKTYEAIVKGEPMPEPGLPESFNVLMHELKGLGLDIRLEE 1270 >gi|237717392|ref|ZP_04547873.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. D1] gi|262406157|ref|ZP_06082707.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 2_1_22] gi|293372126|ref|ZP_06618517.1| DNA-directed RNA polymerase, beta subunit [Bacteroides ovatus SD CMC 3f] gi|294644052|ref|ZP_06721829.1| DNA-directed RNA polymerase, beta subunit [Bacteroides ovatus SD CC 2a] gi|298483057|ref|ZP_07001238.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. D22] gi|229443375|gb|EEO49166.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. D1] gi|262357032|gb|EEZ06122.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 2_1_22] gi|292632918|gb|EFF51505.1| DNA-directed RNA polymerase, beta subunit [Bacteroides ovatus SD CMC 3f] gi|292640576|gb|EFF58817.1| DNA-directed RNA polymerase, beta subunit [Bacteroides ovatus SD CC 2a] gi|295085435|emb|CBK66958.1| DNA-directed RNA polymerase subunit beta [Bacteroides xylanisolvens XB1A] gi|298270801|gb|EFI12381.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. D22] Length = 1270 Score = 1322 bits (3420), Expect = 0.0, Method: Composition-based stats. Identities = 581/1366 (42%), Positives = 823/1366 (60%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +DDC+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + + G+KL + +LK+ E V + Sbjct: 221 -------DLAEDVKVNKTNLKKV-LGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN-AYIRNTLVTDKNKDR 370 +V+ E E+ I+ V++E+ ++EI S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVIIDRETVLEEEHIDEILESGVQNILLHKDEPNQSDFSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINELGFIETPYRKVENGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 N ++YL+A EEE + IAQ N+ L++DG+F V R + +V ++D +D + Sbjct: 561 DLSDNGLIYLTAEEEEEKVIAQGNAPLNDDGTFVLNRVKSRQDADFPVVEPSEVDLMDVA 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL++EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSEAPIVGTGIERQLVRDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+V+ VDA I I R+ + + + YR+ KF+++NQN ++ RP+ Sbjct: 681 TAEGDGVVDYVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRKTNQNMTIDLRPICDK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V++ DI+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVKKGDILTEGYSTEKGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ +GA + PGDI++GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRIGARIEPGDIMIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R + KN S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKKLFSR--VIKNRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 + + + + L R + +LM + G+ + G + K + S+ + Sbjct: 919 PKIDDEFESKVADLKRILVKKLMTLTEGKVSQGVKDYLGAEVIAKGSKFSASDFDSLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+ + + L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 SIQLSNWTSDDHINGMIRDLVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D+ Sbjct: 1099 AVLGRAGKTLGVKFATPIFDGATMEDLDQWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ L DG TGE FD+ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLCDGGTGEQFDQAATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++ +GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEGFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G + G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE 1270 >gi|149372365|ref|ZP_01891553.1| DNA-directed RNA polymerase subunit beta [unidentified eubacterium SCB49] gi|149354755|gb|EDM43318.1| DNA-directed RNA polymerase subunit beta [unidentified eubacterium SCB49] Length = 1270 Score = 1321 bits (3419), Expect = 0.0, Method: Composition-based stats. Identities = 590/1368 (43%), Positives = 803/1368 (58%), Gaps = 117/1368 (8%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R F D PD +++Q S+ F + DER EGL F FPIT Sbjct: 6 TERLNFSSVQNKPDYPDFLDIQIKSFQDFFQLETKSDERGQEGLYKTFLENFPITDTRNQ 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q +Y Sbjct: 66 FVLEFLDYFVDPPRYAIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QDVY 120 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G +P MT GTF I G +R+VVSQLHRSPG+ F +G LY+ R+IP +G W Sbjct: 121 LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKGSW 177 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ D +++ IDR++K+PVT+ A+G + + +IL F L Sbjct: 178 IEFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKASKTGLKKYL- 236 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 G+KL + +LK+ E V Sbjct: 237 --------------------------GRKLAARVLKTWHEDFVDEDT------------G 258 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKD 369 ++V+ E EI ++ V+++ +EEI S + I + D +++ A I NTL D Sbjct: 259 EVVSIERNEIILDRDTVLEKDHIEEIIDSGSKTILLHKEDNHMSDYAIIHNTLQKDPTNS 318 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+ IYR +R + A + N LFF +Y+L VGR +MN +L LD D + Sbjct: 319 EKEAVEHIYRQLRNAEPPDEETARGIINKLFFSDQRYNLGEVGRYRMNKKLQLDIAMDKQ 378 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + KEDII I+K L++L N K IDDID+L NRRVR+VGE L +Q+ +GL RM R+I+ER Sbjct: 379 VLTKEDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSSQFGVGLARMARTIRER 438 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG+ Sbjct: 439 MNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGL 498 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVH THYGR+CP ET EG NIGL+SSL+ +A+VN GFIETPYRKV D Sbjct: 499 SRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAKVNNLGFIETPYRKVTDAT 558 Query: 610 V--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + N+ +YLSA EEE + IAQAN L E G V R G+ ++ ++++ D + Sbjct: 559 IDFKNEPIYLSAEEEEGQLIAQANIPLTESGKIDSAKVIARMEGDFPVIDPTEVNYADVA 618 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL A++P VGTG+E VA S I Sbjct: 619 PNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLIADSPIVGTGLERQVASDSRVLI 678 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+V+ VD+ I I+ E + S Y+L+KF+++NQ T +N +P+V Sbjct: 679 NAEGDGVVQYVDSREITIKYDRTEEARMVSFESDEKTYKLVKFRKTNQGTSINLKPIVNK 738 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD V++ ++ G +T+ G+LALGRNM VAFMPW GYNFED+++ISER+V ED+FTSIHI Sbjct: 739 GDRVKKGQVLCQGYATEKGELALGRNMKVAFMPWKGYNFEDAIVISERVVREDIFTSIHI 798 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKGES Sbjct: 799 DEYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGES 858 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 TPEEKLLRAIFG+KA DV+D SL+ + G V++ ++F R DK +R+ E +I Sbjct: 859 DPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVINKKLFARALKDKRKRAKDKEDIEI 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 L D + L + +L I+ G+ A G F K + +++ Sbjct: 919 --LEAKFDAKFEALQDTLIEKLFTIVSGKTAQGVSNDLGEVVFPKGKKFTLKMLNSVDDY 976 Query: 1020 QWWQ--FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 D+ V L Y+ ++ L+ + I GD++P G+L++ K++ Sbjct: 977 THLTGGTWTTDDATNLLVADLMHNYKIKENDLQGNLRRDKFTISVGDELPSGILKLAKIY 1036 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 VA KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ Sbjct: 1037 VAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIY 1096 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 ET LGWA LG+K + I D I+ L Sbjct: 1097 ETVLGWAGQKLGRKYATPIFDGATIDQINELTD--------------------------- 1129 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 ++G+P G + LYDG TG+ FD+P TVG IYML Sbjct: 1130 ---EAGIP------------------------RYGHTYLYDGGTGQRFDQPATVGVIYML 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+ Sbjct: 1163 KLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTV 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 KSDDV+GR + YESIV G E G PESFNVL+ E++ LGL I LE Sbjct: 1223 KSDDVIGRAKTYESIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE 1270 >gi|124005812|ref|ZP_01690650.1| DNA-directed RNA polymerase, beta subunit [Microscilla marina ATCC 23134] gi|123988495|gb|EAY28136.1| DNA-directed RNA polymerase, beta subunit [Microscilla marina ATCC 23134] Length = 1289 Score = 1321 bits (3419), Expect = 0.0, Method: Composition-based stats. Identities = 590/1381 (42%), Positives = 817/1381 (59%), Gaps = 130/1381 (9%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F +++ PD ++VQ S+ F + + R EGL F FPI+ Sbjct: 8 ERHSFATVEKVVKYPDFLDVQIQSFQDFFQLETPAEFRQQEGLYKVFSENFPISDSRENF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPPK+ VD+C+ R LTY+VPLK LRL D D + EQ +++ Sbjct: 68 LLEFIDYSIDPPKYSVDECIDRGLTYSVPLKAKLRLSCSDEDNEDF-----ETIEQEVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++P MT G+F+I G +R++VSQLHRSPG+ F K +G LY+ RIIP +G W+ Sbjct: 123 GNIPYMTTKGSFIINGAERVIVSQLHRSPGVFFAQSK---HTNGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K PVT+ L +G S+ +IL F Sbjct: 180 EFTTDVNNVMYAYIDRKKKFPVTTLLRVIGFGSDKQILDLFNLSEEIEAEDKVLRDKAI- 238 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK+ E V + Sbjct: 239 -------------------------GRKLAARILKTWTEDFVDEDT------------GE 261 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDR 370 +V+ E EI +E +++ + ++ I S ++ I + D +V + + I NTL D + Sbjct: 262 VVSIERNEILLERDSILEAEDIDTIVDSGVKSIIVHRDDVNVTDYSIIYNTLQKDNSNSE 321 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+AL IYR +R + A + LFF +YDL VGR ++N +L L D R Sbjct: 322 KEALEQIYRQLRNTEAPDEQTAREIIQSLFFSDKRYDLGEVGRYRINKKLELAIDSDTRV 381 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + +EDI++I+K L+ L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+IKER+ Sbjct: 382 LTREDIVSIVKRLIKLINAKAVVDDIDHLSNRRVRTVGEQLYTQFGVGLARMARTIKERM 441 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINA+ + S + FF ++QLSQ + N L+ ITH RR+SALG GG++ Sbjct: 442 NVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRMSALGPGGLS 501 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+C ET EG NIGL+SSL A+VN+ GFIETPYRKV +GKV Sbjct: 502 RERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNSMGFIETPYRKVAEGKV 561 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 TND+ YL+A EE+ +IAQAN + E G F + V R G+ +V + ++D +P Q Sbjct: 562 TNDISYLTAEEEDTHHIAQANVPISESGEFLRDKVKARLEGDFPVVDPAVLSYMDVAPNQ 621 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 +VS+AASLIPFLE+DD+NR LMG NMQRQAVPLL+ +AP VGTG+E VA S A +VA+ Sbjct: 622 IVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPQAPIVGTGLEEQVAVDSRALVVAE 681 Query: 731 RAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 G+++ VDA +I++R E L + Y L+KF+R+NQ+TCVN P+V G + Sbjct: 682 YDGVIDYVDAKKIIVRYDFNEEQQLTSFQDDIVSYNLIKFRRTNQDTCVNLSPIVYKGQK 741 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++ + +G +T+ G+LALG NM VAFMPW GYNFED+++ISER+V +DVFTSIHIEE Sbjct: 742 VKKGQALCEGYATNDGELALGANMKVAFMPWQGYNFEDAIVISERVVRDDVFTSIHIEEK 801 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E+ RDTK G EE+T +IPNVSE+ +K +DE GI+ VG ++ GDIL+GKITPKGES T Sbjct: 802 ELEVRDTKRGQEELTAEIPNVSEDAIKYLDENGIVMVGTKIREGDILIGKITPKGESDPT 861 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE--REQIE 965 PEEKLLRAIFG+KA DV+D SL+ P + G V+D ++F+R DK+ R+ + E + I Sbjct: 862 PEEKLLRAIFGDKAGDVKDASLKAPPSLRGVVIDTKLFSRPKKDKDLRAKAKEEVKSLIT 921 Query: 966 LLARDKDDEQVILDRNIYSRLM-EILCGQNAVSGPKGFKKSTVLSSDLISE--------- 1015 +D Q I+ + + L + G G K + I E Sbjct: 922 QYRKDLQAIQEIVVEKLVTLLEGKTSKGIKHKFGNIVMSKGVKFNQTNIHENLFPKENVY 981 Query: 1016 -------------YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 + A +DEK R + L Y ++ + +FK + ++ Sbjct: 982 RDESTYNVPEEANFVADLILDNATEDEKTNRLLVGLVKNYNKKRNEISGKFKRERFALEV 1041 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++P G++++ KV++A KR ++ GDKMAGRHGNKG+V++I+ EDMPFL+DGTPVDIVL Sbjct: 1042 GDELPAGIVKLAKVYIAKKRKLKVGDKMAGRHGNKGVVAKIVRAEDMPFLEDGTPVDIVL 1101 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182 NPLGVPSRMN+GQI+ET LGWA + LGKK + I D ++ Sbjct: 1102 NPLGVPSRMNLGQIYETVLGWAGLKLGKKYATPIFDGATEDQVTTELD------------ 1149 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242 K+G+P E G++ LYDGLTG Sbjct: 1150 ------------------KAGLP------------------------EFGRTYLYDGLTG 1167 Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302 E FD+P TVG IYMLKL H+V DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW + Sbjct: 1168 ERFDQPTTVGIIYMLKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAL 1227 Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +A+GAA VLQE+LT+KSDDV+GR + YESIV G + PESFNVLV E++ L L I Sbjct: 1228 EAFGAANVLQEILTVKSDDVIGRAKAYESIVKGENIPNPNIPESFNVLVHELRGLALEIT 1287 Query: 1363 L 1363 L Sbjct: 1288 L 1288 >gi|120436715|ref|YP_862401.1| DNA-directed RNA polymerase subunit beta [Gramella forsetii KT0803] gi|158512449|sp|A0M3Y9|RPOB_GRAFK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|117578865|emb|CAL67334.1| DNA-directed RNA polymerase subunit beta [Gramella forsetii KT0803] Length = 1270 Score = 1321 bits (3419), Expect = 0.0, Method: Composition-based stats. Identities = 579/1370 (42%), Positives = 802/1370 (58%), Gaps = 117/1370 (8%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R F PD +++Q S+ F + +ER NEGL F FPIT Sbjct: 4 KQTERLSFSSVKNKPAYPDFLDLQIKSFQDFFQLETKSEERGNEGLYNTFLENFPITDTR 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q Sbjct: 64 NQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QD 118 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +Y+G +P MT GTF I G +R+VVSQLHRSPG+ F +G LY+ R+IP +G Sbjct: 119 VYLGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKG 175 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ D +++ IDR++K+PVT+ A+G + + +IL F Sbjct: 176 SWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKY 235 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L G+KL + +L + E V Sbjct: 236 L---------------------------GRKLAARVLNTWYEDFVDEDT----------- 257 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTDKN 367 ++V+ E EI ++ +++ +EEI + + I + D+ + A I NTL D Sbjct: 258 -GEVVSIERNEIVLDRDTELEKDHIEEILETGSKTILLHKEDNQTGDYAIIHNTLQKDPT 316 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 K+A+ IYR +R + A + + LFF +Y L VGR +MN +L LD D Sbjct: 317 NSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEVGRYRMNKKLGLDVEMD 376 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 + + K DII I+K L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ Sbjct: 377 KQVLTKLDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIR 436 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG G Sbjct: 437 ERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPG 496 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL+ +A+VN GFIETPYR V D Sbjct: 497 GLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAKVNGMGFIETPYRSVTD 556 Query: 608 --GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 + + +YLSA EEE + IAQAN L +DG+ + V R G+ +V ++I + D Sbjct: 557 GKINTSEEPIYLSAEEEEGKKIAQANIPLKDDGTIDTDRVIARMEGDFPVVDPKEIHYTD 616 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ ++P VGTG+E VA S Sbjct: 617 VAPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRTDSPIVGTGLERQVATDSRV 676 Query: 726 AIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 I A+ G VE VDA +IVI+ E + Y L+KF+++NQ +C+N +P++ Sbjct: 677 LINAEGEGEVEYVDANKIVIKYDRTEEERMVSFDDDSKSYNLIKFRKTNQGSCINLKPII 736 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD V + ++ G +T+ G+LALGRNM VAFMPW GYNFED+++ISE++V +D+FTSI Sbjct: 737 SVGDRVTKGQVLCQGYATEAGELALGRNMKVAFMPWKGYNFEDAIVISEKVVRDDIFTSI 796 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E+ + RDTKLG EE+T DIPNVSEE K++DE G+I VGAEV PGDIL+GKITPKG Sbjct: 797 HIDEYSLEVRDTKLGNEELTNDIPNVSEEATKDLDEHGMIRVGAEVKPGDILIGKITPKG 856 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ES TPEEKLLRAIFG+KA DV+D SL+ +SG V++ ++F R K++R + ++E Sbjct: 857 ESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLSGVVINKKLFARA--IKDKRKRAQDKE 914 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYP 1017 + L + D + L ++ +L I+ G+ A G + K + +++ Sbjct: 915 DVAALEKKYDAKFANLKADLVEKLFTIIGGKTAQGVQNDLGEEVMPKGKKYTLKMLNAVD 974 Query: 1018 RS--QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075 D+ + V L Y+ ++ L+ + + + GD++P G+L++ K Sbjct: 975 DYTHLTTGTWTTDDHLNELVADLLHNYKIKENDLQGNLRREKFTVSVGDELPSGILKLAK 1034 Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135 V++A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQ Sbjct: 1035 VYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQ 1094 Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 I+ET LGWA GKK + I D +I+ L Sbjct: 1095 IYETVLGWAGQKNGKKYATPIFDGATIEEINDLTD------------------------- 1129 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 K+G+P G + LYDG TG FD+ TVG IY Sbjct: 1130 -----KAGIP------------------------RYGHTYLYDGGTGMRFDQRATVGVIY 1160 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKL HM+ DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+L Sbjct: 1161 MLKLGHMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASATLREIL 1220 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 T+KSDDV+GR + YE+IV G E G PESFNVL+ E++ LGL I LE Sbjct: 1221 TVKSDDVIGRAKTYEAIVKGEPMPEPGLPESFNVLMHELKGLGLDIKLEE 1270 >gi|146299703|ref|YP_001194294.1| DNA-directed RNA polymerase subunit beta [Flavobacterium johnsoniae UW101] gi|182676564|sp|A5FIJ3|RPOB_FLAJ1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|146154121|gb|ABQ04975.1| DNA-directed RNA polymerase, beta subunit [Flavobacterium johnsoniae UW101] Length = 1270 Score = 1321 bits (3418), Expect = 0.0, Method: Composition-based stats. Identities = 581/1368 (42%), Positives = 804/1368 (58%), Gaps = 117/1368 (8%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R F I D PD ++VQ S+ F + DER NEGL F FPIT Sbjct: 6 TERLNFASTKNIPDYPDFLDVQVKSFKDFFQLETKSDERGNEGLYNTFMENFPITDTRNN 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q +Y Sbjct: 66 FVLEFLDYFVDPPRYTIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QDVY 120 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G +P MT GTFVI G + +VVSQLHRSPG+ F +G LY+ R+IP +G W Sbjct: 121 LGTIPYMTPSGTFVINGAECVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKGSW 177 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ D +++ IDR++K+PVT+ A+G + + +IL F + Sbjct: 178 IEFSTDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKTGIKKYI- 236 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 G++L + +L + E V Sbjct: 237 --------------------------GRRLAARVLNTWHEDFVDEDT------------G 258 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTDKNKD 369 ++V+ E EI ++ +ID+ ++EEI S ++ I + D+ + A I NTL D Sbjct: 259 EVVSIERNEIILDRDTIIDKDNVEEIIDSNVKSILLHKEDNNQADYAIIHNTLQKDPTNS 318 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L+LD P D + Sbjct: 319 EKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLDLDIPMDKQ 378 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + KEDII I+K L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ER Sbjct: 379 VLTKEDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIRER 438 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG+ Sbjct: 439 MNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGL 498 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A+VN GFIETPYRKV DG Sbjct: 499 SRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAKVNGMGFIETPYRKVTDGV 558 Query: 610 VTND--VVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 V + +YLSA EEE + IAQAN +D G T V R G+ +V + + D + Sbjct: 559 VDLESAPIYLSAEEEEGKMIAQANIEMDASGKITASNVIAREEGDFPVVEPSSVHYTDVA 618 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPL++ EAP VGTG+E VA S I Sbjct: 619 PNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLIRPEAPIVGTGLERQVASDSRVLI 678 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G VE VDA I I+ + + + Y L+KF+++NQ T +N +P+V+ Sbjct: 679 NAEGHGTVEYVDANIITIKYDRTEDERMVSFDADEKTYNLIKFRKTNQGTSINLKPIVRR 738 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD V ++++G +T G+LALGRN+ VAFMPW GYNFED+++ISE++V +D+FTSIH+ Sbjct: 739 GDRVVPGQVLSEGYATQNGELALGRNLKVAFMPWKGYNFEDAIVISEKVVRDDIFTSIHV 798 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +++ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKGES Sbjct: 799 DDYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGES 858 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F R K++R + +++ + Sbjct: 859 DPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVLDKKLFARA--VKDKRKRTQDKDAL 916 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 L + + + V L + +L I+ G+ + G + K + ++ Sbjct: 917 GALEMEFETKFVELKDRLVEKLFLIVNGKTSQGVMNDLGEEVLPKGKKYTQKMLYAVEDF 976 Query: 1020 QWWQ--FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 V D+ + V L Y+ + L+ + + I GD++P G+L++ K++ Sbjct: 977 AHLSKGQWVADDATNKMVNDLIHNYKIKLNDLQGALRREKFTITVGDELPSGILKLAKIY 1036 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ Sbjct: 1037 IAKKRKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIY 1096 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 ET LGWA + LG+K + I D + +I+ L Sbjct: 1097 ETVLGWAGMNLGRKFATPIFDGASLDEINALTDEAN------------------------ 1132 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 P F G + LYDG TGE F + TVG IYML Sbjct: 1133 ----------VPRF--------------------GHTYLYDGGTGERFAQKATVGVIYML 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+ Sbjct: 1163 KLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTV 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 KSDDV+GR + YE+IV G E G PESFNVL+ E++ LGL + LE Sbjct: 1223 KSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDLRLEE 1270 >gi|126663352|ref|ZP_01734350.1| DNA-directed RNA polymerase subunit beta [Flavobacteria bacterium BAL38] gi|126625010|gb|EAZ95700.1| DNA-directed RNA polymerase subunit beta [Flavobacteria bacterium BAL38] Length = 1270 Score = 1321 bits (3418), Expect = 0.0, Method: Composition-based stats. Identities = 582/1368 (42%), Positives = 806/1368 (58%), Gaps = 117/1368 (8%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R F I PD +++Q S+ F + DER NEGL F FPIT Sbjct: 6 TERLNFASTKNIPQYPDFLDIQVKSFKDFFQLETKSDERGNEGLYNTFMENFPITDTRNQ 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 +LEF+ Y DPP++ +++C+ R LTY+VPLK L+L D + + Q +Y Sbjct: 66 FVLEFLDYFIDPPRYTIEECIDRGLTYSVPLKARLKLYCTDPEHEDFETIV-----QDVY 120 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W Sbjct: 121 LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARIIPFKGSW 177 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ D ++++ IDR++K+PVT+ A+G + + +IL F Sbjct: 178 IEFATDINNVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKTGIKK--- 234 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 +G++L + +L + E V Sbjct: 235 ------------------------YAGRRLAARVLNTWHEDFVDEDT------------G 258 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTDKNKD 369 ++V+ E EI ++ ++D+ ++EEI ++++ I + D+ + I NTL D Sbjct: 259 EVVSIERNEIILDRDTILDKDNIEEIIEADVKTILLHKEDNNAADYTIIHNTLQKDPTNS 318 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +LNLD P + + Sbjct: 319 EKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLNLDIPMEKQ 378 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + KEDII I+K L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ER Sbjct: 379 VLTKEDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSAQFGVGLARMARTIRER 438 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG+ Sbjct: 439 MNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGL 498 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A+VN GFIETPYRKV +G Sbjct: 499 SRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAKVNGMGFIETPYRKVTEGV 558 Query: 610 V--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 V + VYLSA EEE + IAQAN +D +G T + V R G+ +V +I + D + Sbjct: 559 VDLQSTPVYLSAEEEEGKMIAQANIEMDANGKITADKVIAREEGDFPVVDPTEIHYTDVA 618 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ EAP VGTG+E VA S I Sbjct: 619 PNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAPIVGTGLERQVASDSRVLI 678 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G VE VDA I I+ E + S Y+L+K++++NQ+TC+N +P+V+ Sbjct: 679 NAEGNGTVEYVDANMITIKYDRTEEERMVSFDSDDKTYQLIKYRKTNQSTCINLKPIVRK 738 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD V + ++ +G +T G+LA+GRN+ VAFMPW GYNFED+++ISE++V +D+FTS+HI Sbjct: 739 GDRVAKGQVLCEGYATQNGELAIGRNLKVAFMPWKGYNFEDAIVISEKVVRDDIFTSLHI 798 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +++ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKGES Sbjct: 799 DDYTLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGES 858 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F + DK +RS E + Sbjct: 859 DPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVLDKKLFAKAVKDKRKRSKDKED--V 916 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 + L + + + L + +L I+ G+ + G + K + ++ Sbjct: 917 DKLETEFEVKYTDLKDKLIEKLFVIIDGKTSQGVMNDLGEEVLPKGKKFTKKMLQGVEDF 976 Query: 1020 QWWQ--FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 DE V L Y+ + L+ + + I GD++P G+L++ KV+ Sbjct: 977 AHLTKGQWTTDEHTNAMVNDLIHNYKIKLNDLQGWLRREKFTITVGDELPSGILKLAKVY 1036 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A KR ++ GDKMAGRHGNKGIV++I+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ Sbjct: 1037 IAKKRKLKVGDKMAGRHGNKGIVAKIVRHEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIY 1096 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 ET LGWA L KK + I D I+ Sbjct: 1097 ETVLGWAGQKLNKKFATPIFDGATLDQINEFTD--------------------------- 1129 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 ++G+P G + LYDG TGE F + TVG IYML Sbjct: 1130 ---EAGIP------------------------RFGHTYLYDGGTGERFHQRATVGVIYML 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+ Sbjct: 1163 KLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTV 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 KSDDV+GR + YE+IV G E G PESFNVL+ E++ LGL I LE Sbjct: 1223 KSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE 1270 >gi|160883073|ref|ZP_02064076.1| hypothetical protein BACOVA_01036 [Bacteroides ovatus ATCC 8483] gi|156111545|gb|EDO13290.1| hypothetical protein BACOVA_01036 [Bacteroides ovatus ATCC 8483] Length = 1270 Score = 1320 bits (3416), Expect = 0.0, Method: Composition-based stats. Identities = 582/1366 (42%), Positives = 817/1366 (59%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +DDC+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F L Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKKVL-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK+ E V + Sbjct: 238 -------------------------GRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN-AYIRNTLVTDKNKDR 370 +V+ E E+ I+ V++E ++EI S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVIIDRETVLEEVHIDEILESGVQNILLHKDEPNQSDFSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINDLGFIETPYRKVENGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 N ++YL+A EEE + IAQ N+ L++DG+F V R + +V ++D +D S Sbjct: 561 DLSDNGLIYLTAEEEEEKVIAQGNAPLNDDGTFVRNKVKSRQDADFPVVEPTEVDLMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL++EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSEAPIVGTGIERQLVRDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+V+ VDA I I R+ + + + YR+ KF+++NQN ++ RP+ Sbjct: 681 TAEGDGVVDYVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRKTNQNMTIDLRPICDR 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V++ DI+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVKKGDILTEGYSTEKGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ +GA + PGDI++GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRIGARIEPGDIMIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R + KN S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKKLFSR--VIKNRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 + + + + L R + +LM + G+ + G + K + S+ + Sbjct: 919 PKIDDEFESKVADLKRILVKKLMTLTEGKVSQGVKDYLGAEVIAKGSKFSASDFDSLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+ + + L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 SIQLSNWTSDDHINGMIRDLVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D+ Sbjct: 1099 AVLGRAGKTLGVKFATPIFDGATMEDLDQWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ L DG TGE FD+ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLCDGGTGEQFDQAATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++ +GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEGFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G + G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE 1270 >gi|53715477|ref|YP_101469.1| DNA-directed RNA polymerase subunit beta [Bacteroides fragilis YCH46] gi|60683450|ref|YP_213594.1| DNA-directed RNA polymerase subunit beta [Bacteroides fragilis NCTC 9343] gi|253566658|ref|ZP_04844111.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. 3_2_5] gi|265767536|ref|ZP_06095202.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 2_1_16] gi|81313502|sp|Q5L897|RPOB_BACFN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|81381122|sp|Q64NJ7|RPOB_BACFR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|52218342|dbj|BAD50935.1| DNA-directed RNA polymerase beta chain [Bacteroides fragilis YCH46] gi|60494884|emb|CAH09691.1| putative DNA-directed RNA polymerase beta chain [Bacteroides fragilis NCTC 9343] gi|251944830|gb|EES85305.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. 3_2_5] gi|263252841|gb|EEZ24353.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 2_1_16] Length = 1270 Score = 1320 bits (3416), Expect = 0.0, Method: Composition-based stats. Identities = 581/1366 (42%), Positives = 821/1366 (60%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R EGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +DDC+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + + G+KL + +LK+ E V + Sbjct: 221 -------NLAEDVKVNKTNLKKV-VGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ VI+ + ++EI S +++I I + ++ + I NTL D + Sbjct: 261 VVSIERNEVIIDRETVIEPEHIDEIIDSGVQNILIHKEEPNQSDYSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINDLGFIETPYRKVDNGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 N +VYL+A EEE + IAQ N+ L++DG+F V R + +V +++ +D + Sbjct: 561 DLSENGLVYLTAEEEEAKIIAQGNAPLNDDGTFIRNKVKSRQDADYPVVEPSEVELMDVA 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL++EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSEAPIVGTGIERQLVRDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+++ VDA I I R+ + + + YR+ KF+++NQN ++ RP Sbjct: 681 AAEGDGVIDFVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRKTNQNMTIDLRPTCNK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD V + I+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GDRVTKGQILTEGYSTENGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIQPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G ++D ++F+R + KN S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVIIDKKLFSR--VIKNRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 + + + + L R + +LM + G+ + G + K + S+ + Sbjct: 919 PKIDDEFESKVADLKRILVKKLMVLTEGKVSQGVKDYLGAEVIAKGSKFSASDFDSLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+ + L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 AIQLSDWTNDDHANGMIRDLILNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D++ Sbjct: 1099 AVLGRAGKNLGVKFATPIFDGATLDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ L DG TGE FD+P TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLCDGGTGERFDQPATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++ +GA+++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEGFGASHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G + G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE 1270 >gi|325299612|ref|YP_004259529.1| DNA-directed RNA polymerase subunit beta [Bacteroides salanitronis DSM 18170] gi|324319165|gb|ADY37056.1| DNA-directed RNA polymerase subunit beta [Bacteroides salanitronis DSM 18170] Length = 1270 Score = 1320 bits (3416), Expect = 0.0, Method: Composition-based stats. Identities = 576/1366 (42%), Positives = 806/1366 (59%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F + PD +EVQ S+ FL +N P++R N+GL F FPI Sbjct: 8 QRINFASIKNPMKYPDFLEVQLKSFQDFLQLNTPPEKRKNDGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP + +D+CL R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPHYTIDECLERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTPKGTFVINGAERVVVSQLHRSPGVFFGQS---IHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F + Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAVGFENDKDILEIFNLAEDVKVNKANLKKII-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK+ E V + Sbjct: 238 -------------------------GRKLAARVLKTWTEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ VI+ + ++ I S +++I + + + ++ + I NTL D + Sbjct: 261 VVSIERNEVVIDRETVIEPEHIDLILESGVQNILVHNEEANASDYSIIFNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNLDTP DV+ Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGEVGRYRINKKLNLDTPMDVKV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + K+DII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKQDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RRLSALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRLSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFI TPYRKV D V Sbjct: 501 RDRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINDLGFIVTPYRKVKDATV 560 Query: 611 T---NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + YLSA EEE++ IAQ N+ L++DG+F + V R + +V ++++ +D S Sbjct: 561 DLSPEGIEYLSAEEEEDKIIAQGNAPLNDDGTFIRDRVKARRDADYPVVTPDQVELMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL+ EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRTEAPIVGTGIEKQLCEDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G++E VDA I + E + + YR+ KF+++NQ+ ++ RP+ Sbjct: 681 AAEGDGVIEFVDATTIRVLYDRTQEEEFVSFEPALKEYRIPKFRKTNQSMTIDLRPICNK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V++ DI+ +G ST G+LALG+N+LVA+MPW GYN+ED+++++ERMV ED+ TS+H+ Sbjct: 741 GQRVKKGDILTEGYSTANGELALGKNLLVAYMPWKGYNYEDAIVLNERMVREDILTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E+ + R+TK G EE+T DIPNVSEE K++DE GI+ +GA + PGDIL+GKITPKGES Sbjct: 801 DEYILEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRIGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++++R + K + +++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLYSR--VIKTRSEKNADKQIL 918 Query: 965 ELLARDKDDEQVILDRNIYSRL-----MEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 L + +++ L + +L ++ G G + K + + Sbjct: 919 PKLNEEFEEKAAALKEILVEKLLVLTEDKVSQGVKDYLGTEVIAKGAKFIKHDLESLDYT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D + L + Y L+ K K + GD++P G++++ KV++ Sbjct: 979 VIQLSKWTSDAHKNEMIRDLVMNYLKKYKELDAELKRKKFALTIGDELPSGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D+ Sbjct: 1099 AVLGRAGKELGVKFATPIFDGATLDDLDKWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ LYDG TGE FD+P TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLYDGGTGEQFDQPATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GAA+VLQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGAAHVLQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G G PES NVL+ E++ L LSI LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLCLSITLE 1270 >gi|237718750|ref|ZP_04549231.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. 2_2_4] gi|260175409|ref|ZP_05761821.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. D2] gi|299144630|ref|ZP_07037698.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 3_1_23] gi|315923639|ref|ZP_07919879.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. D2] gi|229451882|gb|EEO57673.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. 2_2_4] gi|298515121|gb|EFI39002.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 3_1_23] gi|313697514|gb|EFS34349.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. D2] Length = 1270 Score = 1320 bits (3415), Expect = 0.0, Method: Composition-based stats. Identities = 582/1366 (42%), Positives = 817/1366 (59%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +DDC+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F L Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKKVL-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK+ E V + Sbjct: 238 -------------------------GRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN-AYIRNTLVTDKNKDR 370 +V+ E E+ I+ V++E ++EI S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVIIDRETVLEEVHIDEILESGVQNILLHKDEPNQSDFSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINDLGFIETPYRKVENGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 N ++YL+A EEE + IAQ N+ L++DG+F V R + +V ++D +D S Sbjct: 561 DLSDNGLIYLTAEEEEEKVIAQGNAPLNDDGTFVRNKVKSRQDADFPVVEPTEVDLMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL++EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSEAPIVGTGIERQLVRDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+V+ VDA I I R+ + + + YR+ KF+++NQN ++ RP+ Sbjct: 681 TAEGDGVVDYVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRKTNQNMTIDLRPICDR 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V++ DI+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVKKGDILTEGYSTEKGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ +GA + PGDI++GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRIGARIEPGDIMIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R + KN S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKKLFSR--VIKNRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 + + + + L R + +LM + G+ + G + K + S+ + Sbjct: 919 PKIDDEFESKVADLKRILVKKLMTLTEGKVSQGVKDYLGAEVIAKGSKFSASDFDSLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+ + + L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 SIQLSNWTSDDHINGMIRDLVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLSDGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D+ Sbjct: 1099 AVLGRAGKTLGVKFATPIFDGATMEDLDQWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ L DG TGE FD+ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLCDGGTGEQFDQAATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++ +GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEGFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G + G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE 1270 >gi|301164934|emb|CBW24495.1| putative DNA-directed RNA polymerase beta chain [Bacteroides fragilis 638R] Length = 1270 Score = 1320 bits (3415), Expect = 0.0, Method: Composition-based stats. Identities = 580/1366 (42%), Positives = 820/1366 (60%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R EGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +DDC+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + + G+KL + +LK+ E V + Sbjct: 221 -------NLAEDVKVNKTNLKKV-VGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ VI+ + ++EI S +++I I + ++ + I NTL D + Sbjct: 261 VVSIERNEVIIDRETVIEPEHIDEIIDSGVQNILIHKEEPNQSDYSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+ ALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMFALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINDLGFIETPYRKVDNGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 N +VYL+A EEE + IAQ N+ L++DG+F V R + +V +++ +D + Sbjct: 561 DLSENGLVYLTAEEEEAKIIAQGNAPLNDDGTFIRNKVKSRQDADYPVVEPSEVELMDVA 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL++EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSEAPIVGTGIERQLVRDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+++ VDA I I R+ + + + YR+ KF+++NQN ++ RP Sbjct: 681 AAEGDGVIDFVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRKTNQNMTIDLRPTCNK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD V + I+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GDRVTKGQILTEGYSTENGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIQPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G ++D ++F+R + KN S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVIIDKKLFSR--VIKNRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 + + + + L R + +LM + G+ + G + K + S+ + Sbjct: 919 PKIDDEFESKVADLKRILVKKLMALTEGKVSQGVKDYLGAEVIAKGSKFSASDFDSLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+ + L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 AIQLSDWTNDDHANGMIRDLILNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D++ Sbjct: 1099 AVLGRAGKNLGVKFATPIFDGATLDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ L DG TGE FD+P TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLCDGGTGERFDQPATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++ +GA+++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEGFGASHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G + G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE 1270 >gi|150008874|ref|YP_001303617.1| DNA-directed RNA polymerase subunit beta [Parabacteroides distasonis ATCC 8503] gi|255014702|ref|ZP_05286828.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. 2_1_7] gi|256841132|ref|ZP_05546639.1| DNA-directed RNA polymerase, beta subunit [Parabacteroides sp. D13] gi|262383747|ref|ZP_06076883.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 2_1_33B] gi|298375897|ref|ZP_06985853.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 3_1_19] gi|301311919|ref|ZP_07217841.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 20_3] gi|158513751|sp|A6LE81|RPOB_PARD8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|149937298|gb|ABR43995.1| DNA-directed RNA polymerase, beta chain [Parabacteroides distasonis ATCC 8503] gi|256736975|gb|EEU50302.1| DNA-directed RNA polymerase, beta subunit [Parabacteroides sp. D13] gi|262294645|gb|EEY82577.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 2_1_33B] gi|298266934|gb|EFI08591.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 3_1_19] gi|300830021|gb|EFK60669.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 20_3] Length = 1270 Score = 1319 bits (3414), Expect = 0.0, Method: Composition-based stats. Identities = 577/1366 (42%), Positives = 803/1366 (58%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F PD +EVQ S+ FL ++ P++R EGL F FPI Sbjct: 8 QRVNFASIKNQFPYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +D+C+ R LTY+VPLK L+L D D I Q +Y+ Sbjct: 68 VLEFLDYYIDPPRYCIDECIARGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVYL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDRGTFVINGAERVVVSQLHRSPGVFFGQS---THANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +S+ +IL F + Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFESDRDILEIFNLAEEVKVTKANLKKFI-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK+ E V + Sbjct: 238 -------------------------GRKLAARVLKTWVEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E ++ I+ V+D ++E I S ++I + D +++ A I NTL D + Sbjct: 261 VVSIERNDVIIDRESVLDSDNIEAILDSGTQNILLHREDQNLSDYAIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R + + + A + LFF +YDL VGR ++N +L L T DV+ Sbjct: 321 KEAVLYIYRQLRNAEPADEASAREVITNLFFSEKRYDLGEVGRYRINKKLGLTTSADVKV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+++ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKAIVDDIDHLSNRRVRTVGEQLYNQFGIGLARMSRTVRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S V FF ++ LSQ + N L+ ITH RRLSALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVVNSFFGTNALSQFMDQTNPLAEITHKRRLSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFI TPYRKV DGKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINDLGFISTPYRKVADGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + Y +A EEE IAQ N+ LD++G F + V R + +VP +ID +D + Sbjct: 561 DFSEEGLQYYTAEEEEELTIAQGNAPLDDNGKFIRDKVKARFEADFPVVPPSEIDLMDVA 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL+ +AP VGTG+E+ VA+ S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRTDAPIVGTGIEAQVARDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 +A+R G V VDA I I+ + + V Y + K++++NQ+T V+ +P Sbjct: 681 MAEREGEVVFVDATCIKIKYDRTEDEEFVSFEDAVKTYNIPKWRKTNQSTTVDLKPTCHR 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V+ DI+ +G ST G+LALGRN+ VA+MPW GYN+ED+++++ERMV ED FTS+H+ Sbjct: 741 GQRVKAGDILTEGYSTQKGELALGRNVKVAYMPWKGYNYEDAIVLNERMVREDFFTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 DEYILEVRETKRGMEELTSDIPNVSEEATKDLDERGIVRVGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V++ +F++ K +S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKATPSLRGVVIETALFSKA--VKKRKSRLTDKAIL 918 Query: 965 ELLARDKDDEQVILDRNIYSRL-----MEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 L + +++ L + +L ++ G + K + + E + Sbjct: 919 PKLDEEYEEKMASLKTLLVDKLLVLTNGKVSQGVKDYMNTEIIAKGAKFTRKSLEELDYN 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D + ++ + + Y L+ + K + GD++P G++++ KV++ Sbjct: 979 SIQVSKWTADAQKNELIKQVILNYLKKYKELDAELRRKKFDLTIGDELPTGIVQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR IQ GDKMAGRHGNKGIVS+I+ EDMPFL+DGTPVDI LNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLEDGTPVDICLNPLGVPSRMNLGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LGWA L K + I D D++ Sbjct: 1099 AVLGWAGRELDVKFATPIFDGATLDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P G+S LYDG TGE FD+P TVG Y LK Sbjct: 1131 --KAGIP------------------------RYGKSYLYDGGTGERFDQPATVGVTYFLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA+VLQE+LTIK Sbjct: 1165 LGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHVLQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G+ + G PES NVL+ E++ LGLS L+ Sbjct: 1225 SDDVVGRSKAYEAIVKGDPMPQPGIPESLNVLLHELRGLGLSFTLD 1270 >gi|198277436|ref|ZP_03209967.1| hypothetical protein BACPLE_03655 [Bacteroides plebeius DSM 17135] gi|198269934|gb|EDY94204.1| hypothetical protein BACPLE_03655 [Bacteroides plebeius DSM 17135] Length = 1270 Score = 1319 bits (3414), Expect = 0.0, Method: Composition-based stats. Identities = 579/1371 (42%), Positives = 810/1371 (59%), Gaps = 117/1371 (8%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 + R F + PD +EVQ S+ FL ++ P++R N+GL F FPI Sbjct: 3 SETQNQRINFASIKNPMQYPDFLEVQLKSFQDFLQLDTPPEKRKNDGLYKVFAENFPIAD 62 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 +LEF+ Y DPP + +DDCL R LTY+VPLK L+L D D I Sbjct: 63 TRNNFVLEFLDYYIDPPHYTIDDCLERGLTYSVPLKAKLKLYCTDPDHEDFDTVI----- 117 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +Y+G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP Sbjct: 118 QDVYLGPIPYMTPKGTFVINGAERVVVSQLHRSPGVFFGQS---IHANGTKLYSARIIPF 174 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWC 246 +G W++ D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 175 KGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAVGFENDKDILEIFNLAEDVKVNKTNLK 234 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 + G+KL + +LK+ E V Sbjct: 235 KII---------------------------GRKLAARVLKTWTEDFVDEDT--------- 258 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTD 365 ++V+ E E+ I+ VI+ + ++ I S +++I + + + ++ + I NTL D Sbjct: 259 ---GEVVSIERNEVVIDRETVIEPEHIDLIIESGVQNILVHNEEANASDYSIIFNTLQKD 315 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 + K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNLDTP Sbjct: 316 PSNSEKEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLDTP 375 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 DVR + K+DII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+ Sbjct: 376 MDVRVLTKQDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRT 435 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 I+ER++ D + P DLINAK + S + FF ++ LSQ + N L+ ITH RRLSALG Sbjct: 436 IRERMNVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRLSALG 495 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFI TPYRKV Sbjct: 496 PGGLSRDRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINELGFIVTPYRKV 555 Query: 606 CDGKV---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 DG V + YLSA EEE++ IAQ N+ L++DG+F E V R + +V ++++ Sbjct: 556 KDGVVDLSNEGIEYLSAEEEEDKIIAQGNAPLNDDGTFIREKVKARRDADYPVVTPDQVE 615 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D +P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLLK EAP VGTG+E + + Sbjct: 616 LMDVAPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKTEAPIVGTGIEKQLCED 675 Query: 723 SGAAIVAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 S I A+ G+++ VDA I I R+ + + + YR+ KF+++NQ+ ++ R Sbjct: 676 SRTQIAAEGDGVIDFVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRKTNQSMTIDLR 735 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P+ G V++ DI+ +G ST G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ Sbjct: 736 PICNKGQRVKKGDILTEGYSTANGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDIL 795 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TS+H++E+ + R+TK G EE+T DIPNVSEE K++DE GI+ +GA + PGDIL+GKIT Sbjct: 796 TSVHVDEYILEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRIGARIEPGDILIGKIT 855 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PKGES +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++++R + K + Sbjct: 856 PKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLYSR--VIKTRSEKNA 913 Query: 960 EREQIELLARDKDDEQVILDRNIYSRL-----MEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 ++ + L + +++ L + +L ++ G G + K + + Sbjct: 914 DKAILPKLNEEFEEKAAALKAILIDKLLVLTADKVSQGVKDYLGTEVIAKGAKFTKYDLE 973 Query: 1015 EYPRSQW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRV 1073 + D + L V Y L+ K K + GD++P G++++ Sbjct: 974 SLDYTVIQLSKWTADAHKNDMIRDLIVNYLKKYKELDAELKRKKFALTIGDELPSGIIQM 1033 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 KV++A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+ Sbjct: 1034 AKVYIAKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNI 1093 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQIFE LG A LG K + I D D+ Sbjct: 1094 GQIFEAVLGRAGKELGVKFATPIFDGATLDDLDEWTD----------------------- 1130 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 K+G+P ++ LYDG TG+ FD+P TVG Sbjct: 1131 -------KAGLP------------------------RYCKTYLYDGGTGDQFDQPATVGV 1159 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 YMLKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GAA+VLQE Sbjct: 1160 TYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGAAHVLQE 1219 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 +LTIKSDDVVGR++ YE+IV G G PES NVL+ E++ L LSI LE Sbjct: 1220 ILTIKSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLCLSITLE 1270 >gi|312892225|ref|ZP_07751722.1| DNA-directed RNA polymerase subunit beta [Mucilaginibacter paludis DSM 18603] gi|311295355|gb|EFQ72527.1| DNA-directed RNA polymerase subunit beta [Mucilaginibacter paludis DSM 18603] Length = 1267 Score = 1319 bits (3414), Expect = 0.0, Method: Composition-based stats. Identities = 585/1366 (42%), Positives = 822/1366 (60%), Gaps = 119/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F + ++++ PD ++VQ S+ F + D R EGL F FPI+ Sbjct: 7 QRVNFATSRKVLEYPDFLDVQLQSFQEFFQLQTTSDNRHKEGLFKVFAENFPISDSRNIF 66 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++D+ +C+ R LT++VPLK LRL D + + Q +Y+ Sbjct: 67 VLEFLDYFIDPPRYDIQECIERGLTHSVPLKAKLRLSCNDEEHEDFETIV-----QDVYL 121 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTFVI G +R++VSQLHRSPG+ F + +G LY+ R+IP +G W+ Sbjct: 122 GTIPYMTPKGTFVINGAERVIVSQLHRSPGVFFGQSR---HTNGTKLYSARVIPFKGSWI 178 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K PVT+ L A+G DS+ +IL F + Sbjct: 179 EFATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFELADEVKVSKSGLKKFI-- 236 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK E V + Sbjct: 237 -------------------------GRKLAARVLKKWVEDFVDEDT------------GE 259 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVTDKNKD 369 +V+ + EI +E V+++ ++ I + ++ I + D+ + Y I NTL D + Sbjct: 260 VVSIDRNEIILERETVLEDDHIDMIIDAGVKTIILNKEDAATSGDYTIIYNTLQKDTSNS 319 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+ IYR +R + A + + LFF +YDL VGR ++N +L L+TP++V+ Sbjct: 320 EKEAVEHIYRQLRNAEPPDEETARGIIDRLFFSDKRYDLGDVGRYRINRKLKLNTPNEVK 379 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + K+DIIAI+K L+ L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I+ER Sbjct: 380 VLTKDDIIAIVKYLIKLINSKAEVDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTIRER 439 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINA+ + S + FF ++QLSQ + N L+ ITH RRLSALG GG+ Sbjct: 440 MNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGL 499 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVH THYGR+C ET EG NIGL+SSL A++N GFIETPY++V DGK Sbjct: 500 SRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCIHAKINNLGFIETPYKRVSDGK 559 Query: 610 VTND--VVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 V D VVYLSA +E+ + I QAN+ D++G+F+ V R G+ ++ ++D++D + Sbjct: 560 VMMDEPVVYLSAEDEDGKTIGQANAIYDDNGNFSTPRVKARFEGDFPIIEPARLDYMDIA 619 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+ SIAASLIPFLE+DD+NR LMG NMQRQAVPLL+ EAP VGTG+E VAK S I Sbjct: 620 PNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLEGRVAKDSRTLI 679 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+VE VDA I I+ E L YRL+KF+++NQ+T +N +P+VK Sbjct: 680 NAEGDGVVEYVDANEIRIKYDRNEEDRLVSFEGDSKSYRLIKFKKTNQSTTINLKPIVKK 739 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V + ++ +G +T G+LALGRN+ VAFMPW G+NFED+++ISER+VS+D+FTS+H+ Sbjct: 740 GQRVEKGQVLCEGYATQDGELALGRNLKVAFMPWQGFNFEDAIVISERVVSQDIFTSLHV 799 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EEFE+ RDTK G EE+T DIPNVSEE K++DE GII VGAEV GDIL+GKITPKGES Sbjct: 800 EEFELEVRDTKRGEEELTPDIPNVSEEATKDLDENGIIRVGAEVKEGDILIGKITPKGES 859 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ P ++G V+D ++F+R + S + E+ I Sbjct: 860 DPSPEEKLLRAIFGDKAGDVKDASLKTPPSIAGVVIDTKLFSRA----KKTSKAEEKAAI 915 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-----KSTVLSSDLISEYPRS 1019 + L + L + +L EI+ G+ + +K K + ++ E + Sbjct: 916 DKLDTKHEKAIKDLKNTLVDKLFEIVNGKTSQGVYNVYKELLVAKGVKFTQKILLELEYA 975 Query: 1020 QWW-QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+ ++ L Y + ++ I GD++P G++++ KV++ Sbjct: 976 NINPTKWTTDDDKNDLIKLLLHNYNIKVNEELGAYRRDKFAISVGDELPSGIVQMAKVYI 1035 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+E Sbjct: 1036 AKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNLGQIYE 1095 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 T LGWA LG K + I D ++ ++ + Sbjct: 1096 TVLGWAGKELGVKFATPIFDGASHDEVEEWVA---------------------------- 1127 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P SG++ LY+GLTG+ FD+ TVG IYMLK Sbjct: 1128 --KAGIPA------------------------SGRTYLYNGLTGDRFDQQTTVGIIYMLK 1161 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA +LQE+LT+K Sbjct: 1162 LGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAANILQEILTVK 1221 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR + YE+IV G + PESFNVLV E++ LGL I LE Sbjct: 1222 SDDVVGRAKTYEAIVKGENLPTPSVPESFNVLVHELRGLGLDITLE 1267 >gi|255692641|ref|ZP_05416316.1| DNA-directed RNA polymerase, beta subunit [Bacteroides finegoldii DSM 17565] gi|260621617|gb|EEX44488.1| DNA-directed RNA polymerase, beta subunit [Bacteroides finegoldii DSM 17565] Length = 1270 Score = 1319 bits (3414), Expect = 0.0, Method: Composition-based stats. Identities = 587/1367 (42%), Positives = 820/1367 (59%), Gaps = 119/1367 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +DDC+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F L Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKKVL-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK+ E V + Sbjct: 238 -------------------------GRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVTDKNKD 369 +V+ E E+ I+ V++E+ ++EI S +++I +L+ D N + Y I NTL D + Sbjct: 261 VVSIERNEVIIDRETVLEEEHIDEILESGVQNI-LLHKDEPNQSDYSIIYNTLQKDPSNS 319 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T +VR Sbjct: 320 EKEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMEVR 379 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER Sbjct: 380 VLTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRER 439 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG+ Sbjct: 440 MNVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGL 499 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GK Sbjct: 500 SRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINDLGFIETPYRKVENGK 559 Query: 610 V---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 V N +VYL+A EEE + IAQ N+ L++DG+F V R + +V +++ +D Sbjct: 560 VDLSENGLVYLTAEEEEEKIIAQGNAPLNDDGTFVRNKVKSRQDADFPVVEPSEVNLMDV 619 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 SP+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL++EAP VGTG+E + + S Sbjct: 620 SPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSEAPIVGTGIERQLVRDSRTQ 679 Query: 727 IVAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 I A+ G+V+ VDA I I R+ + + + YR+ KF+++NQN ++ RP+ Sbjct: 680 ITAEGDGVVDYVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRKTNQNMTIDLRPICD 739 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 G V++ DI+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H Sbjct: 740 KGQRVKKGDILTEGYSTEKGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVH 799 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 +EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ +GA + PGDI++GKITPKGE Sbjct: 800 VEEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRIGARIEPGDIMIGKITPKGE 859 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 S +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R + KN S ++ Sbjct: 860 SDPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKKLFSR--VIKNRSSKLADKAL 917 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPR 1018 + + + + + L R + +LM + G+ + G + K S+ Sbjct: 918 LPKIDDEFESKVADLKRILVKKLMTLTEGKVSQGVKDYLGAEVIAKGAKFSASDFDSLDF 977 Query: 1019 SQW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 + DE + L + + L+ K K I GD++P G++++ KV+ Sbjct: 978 TSIQLSNWTSDEHANGMIRDLVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVY 1037 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIF Sbjct: 1038 IAKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIF 1097 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 E LG A LG K + I D D++ Sbjct: 1098 EAVLGRAGKTLGVKFATPIFDGATMEDLNEWTD--------------------------- 1130 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ++ L DG TGE FD+P TVG YML Sbjct: 1131 ---KAGLP------------------------RYCKTYLCDGGTGEQFDQPATVGVTYML 1163 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++ +GAA++LQE+LTI Sbjct: 1164 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEGFGAAHILQEILTI 1223 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G + G PES NVL+ E++ LGLSI+LE Sbjct: 1224 KSDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE 1270 >gi|189465411|ref|ZP_03014196.1| hypothetical protein BACINT_01764 [Bacteroides intestinalis DSM 17393] gi|189437685|gb|EDV06670.1| hypothetical protein BACINT_01764 [Bacteroides intestinalis DSM 17393] Length = 1270 Score = 1319 bits (3413), Expect = 0.0, Method: Composition-based stats. Identities = 584/1366 (42%), Positives = 823/1366 (60%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRINFASTKNPLEYPDFLEVQLKSFKDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +DDC+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + + G+KL + +LK+ E V + Sbjct: 221 -------NLAEDIKVNKTNLKRV-LGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ VI+ + ++ I S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVVIDRETVIEPEHVDIILESGVQNILVHKEEPNQSDYSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINVLGFIETPYRKVENGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + YL+A EEE + IAQ N+ L++DG+F + V R + +V ++++ +D S Sbjct: 561 DLSDAGLAYLTAEEEEAKIIAQGNAPLNDDGTFIRDKVKARQDADYPVVTPDEVELMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLLK+EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKSEAPIVGTGIERQLVRDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+++ VDA I I R+ + + + YR+ K++R+NQN ++ RP+ ++ Sbjct: 681 TAEGDGVIDFVDATTIRILYDRTEDEEFVSFEPALKEYRIPKWRRTNQNMTIDLRPICEI 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V + I+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TSIH+ Sbjct: 741 GQRVTKGQILTEGYSTENGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDILTSIHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIQPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D R+F+R + K+ S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKRLFSR--VIKSRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 + + D + L + +L+++ G G K S + + Sbjct: 919 PKIDDEFDAKVADLRGVLIRKLLKLTENYVSEGVKDYMGADIISKGAKFSPSDFGDLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+++ + L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 SIQLSNWTNDDRINGMIRDLVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D++ Sbjct: 1099 AVLGRAGKNLGVKFATPIFDGATLDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P G++ LYDG TGEPFD+ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYGKTKLYDGGTGEPFDQHATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G + G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE 1270 >gi|224023600|ref|ZP_03641966.1| hypothetical protein BACCOPRO_00307 [Bacteroides coprophilus DSM 18228] gi|224016822|gb|EEF74834.1| hypothetical protein BACCOPRO_00307 [Bacteroides coprophilus DSM 18228] Length = 1270 Score = 1318 bits (3412), Expect = 0.0, Method: Composition-based stats. Identities = 578/1366 (42%), Positives = 812/1366 (59%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F + PD +EVQ S+ FL ++ P++R N+GL F FPI Sbjct: 8 QRINFASIKNPMQYPDFLEVQLKSFQDFLQLDTPPEKRKNDGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP + +DDCL R LTY+VPLK L+L D D I Q +Y+ Sbjct: 68 VLEFLDYYIDPPHYSIDDCLERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVYL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTPKGTFVINGAERVVVSQLHRSPGVFFGQS---IHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAVGFENDKDILEIFNLAEDIKVNK--------- 230 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++++ G+KL + +LK+ E V + Sbjct: 231 ----------------ANLKKIV--GRKLAARVLKTWTEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ +I+ + ++ I S +++I + + + ++ + I NTL D + Sbjct: 261 VVSIERNEVVIDRETIIEPEHIDLIIESGVQNILVHNEEANTSDYSIIFNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +L+LDT DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGEVGRYRINKKLSLDTSMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + K DII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKHDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RRLSALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRLSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFI TPYRKV DG V Sbjct: 501 RDRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINDLGFIVTPYRKVKDGVV 560 Query: 611 T---NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + YLSA EEE++ IAQ N+ L++DG+F E V R + +V ++++ +D S Sbjct: 561 DLSPEGIEYLSAEEEEDKIIAQGNAPLNDDGTFIREKVKARRDADYPVVTPDQVELMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLLK EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKTEAPIVGTGIERQLCEDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+++ VDA I I R+ + + + YR+ KF+++NQ+ ++ RP+ + Sbjct: 681 AAEGDGVIDFVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRKTNQSMTIDLRPICEK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V++ DI+ +G ST G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVKKGDILTEGYSTANGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDILTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E+ + R+TK G EE+T DIPNVSEE K++DE GI+ +GA + PGDIL+GKITPKGES Sbjct: 801 DEYILEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRIGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++++R + K + ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLYSR--VIKTRSEKNADKAIL 918 Query: 965 ELLARDKDDEQVILDRNIYSRL-----MEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 L + +++ L + ++L ++ G G + K + + + Sbjct: 919 PKLNEEFEEKAAALKEVMVNKLLVLTNDKVSQGVKDYLGTEVIAKGAKFTKRDLESLDYT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D + L V Y L+ K K + GD++P G++++ KV++ Sbjct: 979 IIQLSKWTADAHKNDMIRDLIVNYLKKYKELDAELKRKKFALTIGDELPSGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D+ Sbjct: 1099 AVLGRAGKELGVKFATPIFDGATLEDLDKWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ LYDG TGE FD+P TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLYDGGTGEQFDQPATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GAA+VLQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGAAHVLQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G G PES NVL+ E++ L LSI LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLCLSITLE 1270 >gi|224537809|ref|ZP_03678348.1| hypothetical protein BACCELL_02696 [Bacteroides cellulosilyticus DSM 14838] gi|224520629|gb|EEF89734.1| hypothetical protein BACCELL_02696 [Bacteroides cellulosilyticus DSM 14838] Length = 1270 Score = 1318 bits (3411), Expect = 0.0, Method: Composition-based stats. Identities = 585/1366 (42%), Positives = 823/1366 (60%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRINFASTKNPLEYPDFLEVQLKSFKDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +DDC+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + + G+KL + +LK+ E V + Sbjct: 221 -------NLAEDIKVNKTNLKRV-LGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ VI+ + ++ I S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVVIDRETVIEPEHVDIILESGVQNILVHKEEPNQSDYSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGNVGRYRINKKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINVLGFIETPYRKVENGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + YL+A EEE + IAQ N+ L++DG+F + V R + +V ++++ +D S Sbjct: 561 DLSDEGLAYLTAEEEEAKIIAQGNAPLNDDGTFIRDKVKARQDADYPVVTPDEVELMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLLK+EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKSEAPIVGTGIERQLVRDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G++E VDA I I R+ + + + YR+ K++R+NQN ++ RP+ ++ Sbjct: 681 TAEGDGVIEFVDATVIRILYDRTEDEEFVSFEPALKEYRIPKWRRTNQNMTIDLRPICEI 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V + I+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TSIH+ Sbjct: 741 GQRVTKGQILTEGYSTEKGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDILTSIHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIQPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D R+F+R + K+ S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKRLFSR--VIKSRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 + + D + L + +L+++ G G K S + + Sbjct: 919 PKIDDEFDAKVADLRGVLIRKLLKLTENHVSEGVKDYMGADIISKGAKFSPSDFGDLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+++ + L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 SIQLSNWTNDDRINGMIRDLVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D++ Sbjct: 1099 AVLGRAGKNLGVKFATPIFDGATLDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P G++ LYDG TGEPFD+ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYGKTKLYDGGTGEPFDQHATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G + G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE 1270 >gi|313677113|ref|YP_004055109.1| DNA-directed RNA polymerase subunit beta [Marivirga tractuosa DSM 4126] gi|312943811|gb|ADR23001.1| DNA-directed RNA polymerase subunit beta [Marivirga tractuosa DSM 4126] Length = 1290 Score = 1318 bits (3410), Expect = 0.0, Method: Composition-based stats. Identities = 588/1386 (42%), Positives = 849/1386 (61%), Gaps = 137/1386 (9%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F +ID PD ++VQ S+ F + ++R EG+ F+ FPI+ Sbjct: 8 ERINFSSIKTVIDYPDFLDVQLQSFQDFFQLETPAEKRAEEGIFKVFQENFPISDSRENF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEFV Y DPPK+D+D C+ R LTY+VPLK LRLI D D + EQ +++ Sbjct: 68 VLEFVDYLVDPPKYDIDGCIDRGLTYSVPLKAKLRLICNDEDNEDF-----ETIEQEVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++P MT+ G+F+I G +R++VSQLHRSPG+ F K +G LY+ RIIP +G W+ Sbjct: 123 GNIPYMTEKGSFIINGAERVIVSQLHRSPGVFFAQSK---HTNGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K PVT+ L A+G S+ +IL F + Sbjct: 180 EFATDVNNVMYAYIDRKKKFPVTTLLRAIGYGSDKDILDLF-----------------NL 222 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + G K + + + G+KL + +LK+ E V + Sbjct: 223 SEEVDGTKAAL-------KKVI---GRKLAARVLKTWTEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDR 370 +V+ + E+ +E VI+E+ ++ I + ++ I + D ++ + + + NTL D + Sbjct: 261 VVSIDRNEVLLERDSVIEEEDIDLIIDAGVKSIILHRTDVNITDYSIVYNTLQKDNSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+ IYR +R + + A + LFF +YDL VGR ++N +L LD + + Sbjct: 321 KEAVEQIYRQLRNTEAPDEATAREIIQNLFFSEKRYDLGEVGRYRINKKLGLDIDAETKV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + K DII I+K L+ L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I+ER+ Sbjct: 381 LTKVDIIHIVKYLIGLINSKAIVDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINA+ + S + FF ++QLSQ + N LS +TH RR+SALG GG++ Sbjct: 441 NVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLSEVTHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC--DG 608 R RAG E+RDVH THYGR+C ET EG NIGL+SSL A+VN GFIETPYRKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNGMGFIETPYRKVEGGKV 560 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 ++ +V+YL+A EE++ IAQAN+ +D+ G + + V R G+ ++ +++ ++D +P Sbjct: 561 DMSGNVLYLTAEEEDDHNIAQANAPIDDSGKYLNDRVKARFEGDFPVLEPKELSYMDIAP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 Q+VS+AAS+IPFLE+DD+NR LMG NMQRQAVPLL+ EAP VGTG+E VA+ S + IV Sbjct: 621 NQIVSVAASMIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLEGRVARDSRSMIV 680 Query: 729 AKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A++ G+V VDA +IV++ E +L +Y L+KF+R+NQNT +N RPLV G Sbjct: 681 AEKDGVVVFVDATKIVVKYDMNEEEELVSFEDDERVYDLIKFRRTNQNTTINLRPLVYKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 D+V++ I+ DG +T+ G+LA+GRNM VAFMPW GYNFED+++ISER+V ED+FTSIHIE Sbjct: 741 DKVKKGQILCDGYATEKGELAIGRNMKVAFMPWQGYNFEDAIVISERVVREDIFTSIHIE 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 EFE+ RDTK G EE+T +IPNVSEE +KN+DE GII G E+ GDIL+GKITPKGE+ Sbjct: 801 EFELEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRTGTEIKEGDILIGKITPKGETD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 TPEEKLLRAIFG+KA DV+D S++ + G V+D ++F RH DK+ R+ + ++++E Sbjct: 861 PTPEEKLLRAIFGDKAGDVKDASMKASPSLRGVVIDTKLFARHKKDKDGRADA--KKEVE 918 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISE----- 1015 +LA++ + + L +L +L G+ G + K + + I + Sbjct: 919 VLAKEYSRQLLKLRNLKIEKLATLLEGKTCQGIKHKFGDEIMSKGVKFTQNNIEKNLFPE 978 Query: 1016 -----------------YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIE 1058 DE + + L Y ++ + +FK + Sbjct: 979 KNIYRDESNYNVPEEVNLISDLILDNWTNDENTNKLIVDLVRNYNKRRNEIAGKFKRERF 1038 Query: 1059 KIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPV 1118 I+ GD++P G++++ KV+VA KR ++ GDKMAGRHGNKG+V++I+ EDMPFL+DGTPV Sbjct: 1039 TIEVGDELPAGIVQLAKVYVAKKRKLKVGDKMAGRHGNKGVVAKIVRDEDMPFLEDGTPV 1098 Query: 1119 DIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT 1178 DIVLNPLGVPSRMN+GQI+ET LGWA + LG+K + I D ++ ++S Sbjct: 1099 DIVLNPLGVPSRMNIGQIYETVLGWAGLKLGRKYATPIFDGASSDEVS------------ 1146 Query: 1179 GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYD 1238 AE ++G+P E G++ LYD Sbjct: 1147 ------------------AELAEAGLP------------------------EFGRTHLYD 1164 Query: 1239 GLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEME 1298 GLTG+ FD+ VTVG IYMLKL H++ DK++ARS G YSL+TQQPLGGK+ GGQR GEME Sbjct: 1165 GLTGDIFDQKVTVGVIYMLKLGHLIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEME 1224 Query: 1299 VWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALG 1358 VW ++A+GA++VLQE+LTIKSDDV+GR + YE+IV G + + PESFNVLV E++ L Sbjct: 1225 VWALEAFGASHVLQEILTIKSDDVIGRAKAYEAIVKGENMGKPNIPESFNVLVHELRGLA 1284 Query: 1359 LSIDLE 1364 L I L+ Sbjct: 1285 LEITLD 1290 >gi|167764379|ref|ZP_02436504.1| hypothetical protein BACSTE_02763 [Bacteroides stercoris ATCC 43183] gi|167697784|gb|EDS14363.1| hypothetical protein BACSTE_02763 [Bacteroides stercoris ATCC 43183] Length = 1270 Score = 1317 bits (3408), Expect = 0.0, Method: Composition-based stats. Identities = 583/1366 (42%), Positives = 822/1366 (60%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFKDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +D+C+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDECIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + I G+KL + +LK+ E V + Sbjct: 221 -------NLAEDVKVNKTNLKKI-VGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ +I+ + ++ I S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVVIDRETIIEPEHIDIILESGVQNILVHKEEPNQSDYSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINRKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINQLGFIETPYRKVANGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 +VYL+A EEE + IAQ N+ L+EDG+F + V R + +V ++++ +D S Sbjct: 561 DLSDEGLVYLTAEEEEEKIIAQGNAPLNEDGTFVRDKVKSRQDADYPVVAPDEVELMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLLK+EAP VGTG+E +A+ S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKSEAPIVGTGIERQLARDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+V+ VDA I I E + S + Y + K++R+NQN ++ RP+ + Sbjct: 681 TAEGEGVVDFVDATTIRILYDRTEEEEFVSFESALKEYTIPKWRRTNQNMTIDLRPICEK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V + I+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVTKGQILTEGYSTEQGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G ++ R+F+R + K S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVIIGKRLFSR--VIKTRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 + + D + L++ + ++L+++ G G + K + S+ + Sbjct: 919 PKIDDEFDSKVADLEKILVNKLLKLTENHTSEGVKDYMGAEVISKGAKFYASDFSDIDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 +DE + +L + L+ K K I GD++P G++++ KV++ Sbjct: 979 AIQLSNWTKDEHTNELIRALVTNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D++ Sbjct: 1099 AVLGRAGKNLGVKFATPIFDGATLDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P G++ LYDG TGE F++ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYGKTTLYDGGTGEAFEQQATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPAPGIPESLNVLLHELRGLGLSINLE 1270 >gi|298206596|ref|YP_003714775.1| DNA-directed RNA polymerase beta subunit [Croceibacter atlanticus HTCC2559] gi|83849226|gb|EAP87094.1| DNA-directed RNA polymerase beta subunit [Croceibacter atlanticus HTCC2559] Length = 1270 Score = 1317 bits (3407), Expect = 0.0, Method: Composition-based stats. Identities = 588/1368 (42%), Positives = 806/1368 (58%), Gaps = 117/1368 (8%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R F D PD +++Q S+ F + DER EGL F FPIT Sbjct: 6 TERLNFSNVKNRPDYPDFLDIQIQSFQDFFQLETKSDEREAEGLYKTFMENFPITDTRNQ 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q +Y Sbjct: 66 FVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QDVY 120 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G +P MT GTF I G +R+VVSQLHRSPG+ F +G LY+ R+IP +G W Sbjct: 121 LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKGSW 177 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ D +++ IDR++K+PVT+ A+G + + +IL F L Sbjct: 178 IEFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVTKSGLKKVL- 236 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 G+KL + +L + E V Sbjct: 237 --------------------------GRKLAARVLNTWYEDFVDEDT------------G 258 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTDKNKD 369 ++V+ E EI ++ ++++ +EEI + + I + D+ + A I NTL D Sbjct: 259 EVVSIERNEIVLDRDTELEKEHIEEILETGTKTILLHKEDNSTGDYAIIHNTLQKDPTNS 318 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L LD D + Sbjct: 319 EKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLGLDIAMDKQ 378 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + KEDII IIK L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ER Sbjct: 379 VLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIRER 438 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG+ Sbjct: 439 MNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGL 498 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVH THYGR+CP ET EG NIGL+SSL+ +A+VNA GFIETPYRKV DGK Sbjct: 499 SRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAKVNALGFIETPYRKVDDGK 558 Query: 610 VT--NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + +YLSA EEE IAQAN LD+ G+ E V R G+ + + +++ID + Sbjct: 559 INLDESPIYLSAEEEEGMKIAQANIPLDDKGNIEAERVIARLEGDFPVEDPKNVNYIDVA 618 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ ++P VGTG+E VA S I Sbjct: 619 PNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRVDSPIVGTGLERQVASDSRVLI 678 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ AG VE VDA + I+ E S Y L+KF+++NQ T +N +P+VKV Sbjct: 679 NAEGAGTVEYVDANMVTIKYDRSEEERQVSFDSDSKSYNLIKFRKTNQGTSINLKPIVKV 738 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD V R ++ G +T+ G+LALGRNM VAFMPW GYNFED+++ISE++V ED+FTSIH+ Sbjct: 739 GDRVERGQVLCQGYATEAGELALGRNMKVAFMPWKGYNFEDAIVISEKVVREDIFTSIHV 798 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKGES Sbjct: 799 DEYSLDVRDTKLGNEELTNDIPNVSEEATKDLDEYGMIRIGAEVKPGDILIGKITPKGES 858 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 TPEEKLLRAIFG+KA DV+D SL+ ++G V+D ++F R K++R + ++E I Sbjct: 859 DPTPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVIDKKLFERA--IKDKRKRAQDKEDI 916 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 L + D + L + +L ++ G+ A G K + +++ Sbjct: 917 ARLEVEYDAKFDDLKAVLVEKLFNLIGGKTAQGVKNDLGEDILPKGKKYTLKMLNSVEDY 976 Query: 1020 QWWQF--AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 D+++ V L Y+ ++ L+ + + I GD++P G++++ K++ Sbjct: 977 THLTQGTWTTDDELNSMVADLIHNYKIKENDLQGNLRREKFTISVGDELPAGIIKLAKIY 1036 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ Sbjct: 1037 IAKKRKLKVGDKMAGRHGNKGIVARIVREEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIY 1096 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 ET LGWA LG+K + I D I+ L Sbjct: 1097 ETVLGWAGQKLGRKFATPIFDGATLDQINELTD--------------------------- 1129 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 ++G+P G + LYDG TG+ FD+P TVG IYML Sbjct: 1130 ---EAGIP------------------------RFGHTHLYDGGTGDRFDQPATVGVIYML 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+ Sbjct: 1163 KLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTV 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 KSDDV+GR + YESIV G E G ESFNVL+ E++ LGL I LE Sbjct: 1223 KSDDVIGRAKTYESIVKGEPMPEPGLRESFNVLMHELKGLGLDIRLEE 1270 >gi|329956690|ref|ZP_08297263.1| DNA-directed RNA polymerase, beta subunit [Bacteroides clarus YIT 12056] gi|328524062|gb|EGF51138.1| DNA-directed RNA polymerase, beta subunit [Bacteroides clarus YIT 12056] Length = 1270 Score = 1317 bits (3407), Expect = 0.0, Method: Composition-based stats. Identities = 582/1366 (42%), Positives = 825/1366 (60%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFKDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +D+C+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDECIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + I G+KL + +LK+ E V + Sbjct: 221 -------NLAEDVKVNKTNLKKI-VGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ +I+ + ++ I S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVVIDRETIIEPEHVDIILESGVQNILVHKEEPNQSDYSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINRKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINELGFIETPYRKVANGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 +VYL+A EEE + IAQ N+ L++DG+F + V R + +V ++++ +D S Sbjct: 561 DLSDEGLVYLTAEEEEEKIIAQGNAPLNDDGTFVRDRVKSRQDADYPVVAPDEVELMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLLK+EAP VGTG+E +A+ S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKSEAPIVGTGIERQLARDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+V+ VDA I I R+ + + S + Y + K++R+NQN ++ RP+ + Sbjct: 681 TAEGEGVVDFVDATTIRILYDRTEDEEFVSFESALKEYTIPKWRRTNQNMTIDLRPICEK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V + I+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVTKGQILTEGYSTEQGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G ++ R+F+R + K S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVIIGKRLFSR--VIKTRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 + + D + L + + ++L+++ G G + K S+ S+ + Sbjct: 919 PKIDDEFDGKVADLKKILVNKLLKLTENYTSEGVKDYMGAEVISKGAKFSASDFSDMDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 +DE + +L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 AIQLSNWTKDEHTNGLIRALVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D++ Sbjct: 1099 AVLGRAGKNLGVKFATPIFDGATLDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P G++ L+DG TGE F++ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYGKTTLFDGGTGEAFEQQATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPAPGIPESLNVLLHELRGLGLSINLE 1270 >gi|330997385|ref|ZP_08321236.1| DNA-directed RNA polymerase, beta subunit [Paraprevotella xylaniphila YIT 11841] gi|329570759|gb|EGG52475.1| DNA-directed RNA polymerase, beta subunit [Paraprevotella xylaniphila YIT 11841] Length = 1271 Score = 1316 bits (3406), Expect = 0.0, Method: Composition-based stats. Identities = 580/1368 (42%), Positives = 811/1368 (59%), Gaps = 120/1368 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F + PD ++VQ S+ FL ++ P++R N+GL F FPI Sbjct: 8 QRVNFATVKSPMPYPDFLDVQLKSFKDFLQLDTPPEKRKNDGLYKVFSENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +++CL R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIEECLERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT +GTF+I G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDNGTFIINGAERVVVSQLHRSPGVFFGSS---IHANGTQLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G + + +IL F + Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFEDDKDILEIFNLAEEVKATKTNLKKYI-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 GKKL + +LKS E V + Sbjct: 238 -------------------------GKKLAARVLKSWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVTDKNKD 369 +V+ E E+ ++ ++DE ++ I S ++ + +L+ + +N + Y I NTL D + Sbjct: 261 VVSIERNEVILDREAILDEDNICIILDSGVQSV-LLHKEEINTSDYSIIFNTLQKDPSNS 319 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 320 EKEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGEVGRYRINRKLNLSTDMDVR 379 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER Sbjct: 380 VLTKEDIIEIIKYLIELINSKALVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRER 439 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG+ Sbjct: 440 MNVRDNEVFTPTDLINAKTISSVINSFFGTNALSQFMDQTNPLAEVTHKRRLSALGPGGL 499 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFIETPYRKV DG Sbjct: 500 SRERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYAKINDLGFIETPYRKVQDGV 559 Query: 610 V----TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 V + YL+A EEE + I Q N+ L++DG+F + V CR + +VP ++ +D Sbjct: 560 VDLSLETGIEYLTAEEEEGKIIGQGNAPLNDDGTFIRKKVKCRQDDDYPVVPPSDVNLMD 619 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 +P+Q+ SIAASLIPFLE+DD++R LMG NM RQAVPLL++E+P VGTG+E V + S Sbjct: 620 VAPQQIASIAASLIPFLEHDDAHRALMGSNMMRQAVPLLRSESPIVGTGIEKQVCEDSRT 679 Query: 726 AIVAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 I A+ G++E VDA I I R+ E + + YR+ KF+R+NQN ++ RP+ Sbjct: 680 MITAEGDGVIEYVDATTIRILYDRTEEEEFVSFEPALKEYRIPKFRRTNQNMTIDLRPIC 739 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G V+ DI+ +G ST G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TSI Sbjct: 740 DKGQRVKAGDILTEGYSTQQGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDILTSI 799 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 H+EEF + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDI++GKITPKG Sbjct: 800 HVEEFSLEVRETKRGVEELTADIPNVSEEATKDLDENGIVRVGARIQPGDIMIGKITPKG 859 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ES +PEEKLLRAIFG+KA DV+D SL+ ++G V+D ++F+R K + + ++ Sbjct: 860 ESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVIDKKLFSRA--IKTRAAKAADKL 917 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISEYP 1017 + + + + + L + +L+E+ G G ++ + Sbjct: 918 ILPKIDEEFNSKVEDLKAILIDKLLELTKDKVSQGVKDYMGSDVIASGRKFAASALEGLD 977 Query: 1018 RSQW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 + DE + + L + + +L+ K K I GD++P G++++ KV Sbjct: 978 FTTIQLSGWTDDEHLNGLISQLIINFLKKYKLLDAELKRKKFAITIGDELPSGIIQMAKV 1037 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 ++A KR I GDKMAGRHGNKGIVS+I+ EDMPFL DGTPVDIVLNPLGVPSRMN+GQI Sbjct: 1038 YIAKKRKIGVGDKMAGRHGNKGIVSKIVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQI 1097 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 FET LG A LG K + I D D+ Sbjct: 1098 FETVLGAAGKELGVKFATPIFDGATLDDLCEWTD-------------------------- 1131 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 K+G+P + LYDG TGE FD+ TVG YM Sbjct: 1132 ----KAGLP------------------------RYCSTQLYDGETGEKFDQLATVGIAYM 1163 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LT Sbjct: 1164 LKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILT 1223 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 IKSDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI LE Sbjct: 1224 IKSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSITLE 1271 >gi|189460677|ref|ZP_03009462.1| hypothetical protein BACCOP_01324 [Bacteroides coprocola DSM 17136] gi|189432636|gb|EDV01621.1| hypothetical protein BACCOP_01324 [Bacteroides coprocola DSM 17136] Length = 1270 Score = 1315 bits (3404), Expect = 0.0, Method: Composition-based stats. Identities = 578/1366 (42%), Positives = 808/1366 (59%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F + PD +EVQ S+ FL ++ P++R N+GL F FPI Sbjct: 8 QRINFASIKNPMKYPDFLEVQLKSFQDFLQLDTPPEKRKNDGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP + +DDCL R LTY+VPLK L+L D D I Q +Y+ Sbjct: 68 VLEFLDYYIDPPHYTIDDCLERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVYL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTPKGTFVINGAERVVVSQLHRSPGVFFGQS---IHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F + Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAVGFENDKDILEIFNLAEDVKVNKANLKKII-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK+ E V + Sbjct: 238 -------------------------GRKLAARVLKTWTEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ VI+ + ++ I S I++I + + + ++ + I NTL D + Sbjct: 261 VVSIERNEVVIDRETVIEPEHIDLILESGIQNILVHNEEANSSDYSIIFNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNLDT DV+ Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGEVGRYRINKKLNLDTDMDVKV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + K+DII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKQDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RRLSALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRLSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFI TPYRKV DG V Sbjct: 501 RDRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINDLGFIVTPYRKVKDGVV 560 Query: 611 T---NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + YLSA EEE++ IAQ N+ L++DG+F E V R + +V ++++ +D + Sbjct: 561 DLSPEGIEYLSAEEEEDKIIAQGNAPLNDDGTFIREKVKARRDADYPVVTPDQVELMDVA 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLLK EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKTEAPIVGTGIEKQLCEDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+++ VDA I I R+ + + + YR+ KF+++NQ+ ++ RP+ Sbjct: 681 TAEGDGVIDFVDATTIRILYDRTDDEEFVSFEPALKEYRIPKFRKTNQSMTIDLRPICTK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V++ DI+ +G ST G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVKKGDILTEGYSTANGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDILTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E+ + R+TK G EE+T DIPNVSEE K++DE GI+ +GA + PGDIL+GKITPKGES Sbjct: 801 DEYILEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRIGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++++R + K + ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLYSR--VIKTRSEKNADKAIL 918 Query: 965 ELLARDKDDEQVILDRNIYSRL-----MEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 L + +++ L + +L ++ G G + K + + + Sbjct: 919 PKLNEEFEEKAAALKEILVEKLLVLTNDKVSQGVKDYLGTEVIAKGAKFTKRDLESLDYT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D + L + Y L+ K K + GD++P G++++ KV++ Sbjct: 979 IIQLSKWTSDAHKNDMIRDLIMNYLKKYKELDAELKRKKFALTIGDELPSGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D+ Sbjct: 1099 AVLGRAGKELGVKFATPIFDGATLDDLDKWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ LYDG TGE FD+P TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLYDGGTGEQFDQPATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GAA+VLQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGAAHVLQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G G PES NVL+ E++ L LSI LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLCLSITLE 1270 >gi|218131345|ref|ZP_03460149.1| hypothetical protein BACEGG_02956 [Bacteroides eggerthii DSM 20697] gi|317476372|ref|ZP_07935621.1| DNA-directed RNA polymerase [Bacteroides eggerthii 1_2_48FAA] gi|217986277|gb|EEC52614.1| hypothetical protein BACEGG_02956 [Bacteroides eggerthii DSM 20697] gi|316907398|gb|EFV29103.1| DNA-directed RNA polymerase [Bacteroides eggerthii 1_2_48FAA] Length = 1270 Score = 1315 bits (3402), Expect = 0.0, Method: Composition-based stats. Identities = 583/1366 (42%), Positives = 823/1366 (60%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFKDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +D+C+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDECIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + I G+KL + +LK+ E V + Sbjct: 221 -------NLAEDVKVNKTNLKKI-VGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ +I+ + ++ I S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVVIDRETIIEPEHVDIILESGVQNILVHKEEPNQSDYSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINQLGFIETPYRKVANGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 +VYL+A EEE + IAQ N+ L++DG+F + V R + +V ++++ +D S Sbjct: 561 DLSDEGLVYLTAEEEEEKIIAQGNAPLNDDGTFVRDRVKSRQDADYPVVAPDEVELMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLLK+EAP VGTG+E +A+ S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKSEAPIVGTGIERQLARDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+V+ VDA I I E + S + Y + K++R+NQN ++ RP+ + Sbjct: 681 TAEGEGVVDFVDATTIRILYDRTEEEEFVSFESALKEYTIPKWRRTNQNMTIDLRPICEK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V + I+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVTKGQILTEGYSTEQGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G ++ R+F+R + K S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVIIGKRLFSR--VIKTRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 + + D + L + + ++L+++ G G + K S+ S+ + Sbjct: 919 PKIDDEFDGKVADLKKILVNKLLKLTERYTSEGVKDYMGAEVISKGAKFSASDFSDMDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 +DE + +L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 AIQLSNWTKDEHTNGLIRALVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D++ Sbjct: 1099 AVLGRAGKNLGVKFATPIFDGATLDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P G++ LYDG TGE F++ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYGKTTLYDGGTGEAFEQQATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPAPGIPESLNVLLHELRGLGLSINLE 1270 >gi|305664386|ref|YP_003860673.1| DNA-directed RNA polymerase subunit beta [Maribacter sp. HTCC2170] gi|88708403|gb|EAR00639.1| DNA-directed RNA polymerase beta subunit [Maribacter sp. HTCC2170] Length = 1269 Score = 1314 bits (3401), Expect = 0.0, Method: Composition-based stats. Identities = 585/1372 (42%), Positives = 814/1372 (59%), Gaps = 117/1372 (8%) Query: 7 FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPIT 66 F R F + PD +++Q S+ F + D+R EGL F FPIT Sbjct: 2 FTNQ-TERINFASAKNTPEYPDFLDIQIKSFQDFFQLETKSDQRGTEGLYNTFMENFPIT 60 Query: 67 AFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIK 126 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Sbjct: 61 DTRNQFVLEFLDYFIDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV---- 116 Query: 127 EQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIP 186 Q +Y+G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ R+IP Sbjct: 117 -QDVYLGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIP 172 Query: 187 DQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFW 245 +G W++ D +++ IDR++K+PVT+ A+G +S+ +IL F Sbjct: 173 FKGSWIEFATDINGVMYAYIDRKKKLPVTTLFRAIGFESDKDILEIFDLSEEVKVSKAGL 232 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCG 305 L G+KL + +L + E V Sbjct: 233 KKVL---------------------------GRKLAARVLNTWHEDFVDEDT-------- 257 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVT 364 ++V+ E EI ++ V+++ +EEI ++++ I + ++ ++ A I NTL Sbjct: 258 ----GEVVSIERNEIILDRDTVLEKDHIEEILGTDVKTILLHKENNAQSDYAIIHNTLQK 313 Query: 365 DKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDT 424 D K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L LD Sbjct: 314 DPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLQLDI 373 Query: 425 PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 D + + KEDII IIK L++L N K IDDID+L NRRVR+VGE L +Q+ +GL RM R Sbjct: 374 GMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSSQFGVGLARMAR 433 Query: 485 SIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSAL 544 +I+ER++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSAL Sbjct: 434 TIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSAL 493 Query: 545 GQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604 G GG++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA+VN GF+ETPYRK Sbjct: 494 GPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFAKVNPMGFLETPYRK 553 Query: 605 VCDGKV-TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 V KV T + +YLSA EEE IAQAN L ++G+ E V R G+ +V +++++ Sbjct: 554 VDGAKVDTKEYMYLSAEEEEGMKIAQANIPLKDNGAIDSEKVIAREEGDFPVVDPKEVNY 613 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 D +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLLK ++P VGTG+E VA S Sbjct: 614 TDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLKPQSPIVGTGLERQVASDS 673 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 I A+ G +E VD+ +I I+ L Y L+KF+++NQ T +N +P Sbjct: 674 RVLINAEGDGTIEYVDSQKITIKYKRTDAERLISFDEDEKTYNLVKFRKTNQGTSINLKP 733 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK GD+V++ ++ +G +T+ G+LALGRN+ VAFMPW GYNFED+++ISE++V ED+FT Sbjct: 734 IVKKGDKVKKGQVLCEGYATEKGELALGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFT 793 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIH++E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITP Sbjct: 794 SIHVDEYALEVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITP 853 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGES TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R K++R S + Sbjct: 854 KGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSR--SIKDKRKRSED 911 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISE 1015 +E I L + + + L + +L ++ G+ + G + K + +++ Sbjct: 912 KEAISTLELEYEVKFQQLKDVLVEKLFTLINGKTSQGVLNDLGEEVLPKGKKYTMKMLNS 971 Query: 1016 YPRSQWW--QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRV 1073 D+ V +V L Y+ + L+ + I GD++P G++++ Sbjct: 972 VDDFAHLVAGTWTTDKDVNHSVADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKL 1031 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 KV+VA KR ++ GDKMAGRHGNKGIVSRI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+ Sbjct: 1032 AKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNI 1091 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQI+ET LGWA + LG+K + I D +I+ Sbjct: 1092 GQIYETVLGWAGLKLGRKYATPIFDGATLDEIN--------------------------- 1124 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 A ++G+P G + LYDG TG+ FD+ TVG Sbjct: 1125 ---AYTDEAGIP------------------------RFGHTHLYDGGTGKRFDQAATVGV 1157 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E Sbjct: 1158 IYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASATLRE 1217 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 +LT+KSDDV+GR + YESIV G E G PESFNVL+ E++ LGL I LE Sbjct: 1218 ILTVKSDDVIGRAKTYESIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE 1269 >gi|110639542|ref|YP_679751.1| DNA-directed RNA polymerase subunit beta [Cytophaga hutchinsonii ATCC 33406] gi|123058539|sp|Q11QA5|RPOB_CYTH3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|110282223|gb|ABG60409.1| DNA-directed RNA polymerase subunit beta [Cytophaga hutchinsonii ATCC 33406] Length = 1291 Score = 1314 bits (3400), Expect = 0.0, Method: Composition-based stats. Identities = 589/1387 (42%), Positives = 825/1387 (59%), Gaps = 139/1387 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK F K ++ PD +++Q S+ F ++ + R EGL F FPI+ Sbjct: 9 LRKSFAKTRSTVEYPDFLDIQVRSFKDFFQIDTPAENRFKEGLYKVFAENFPISDSRDNF 68 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +L+F+ Y D PK++VD+C+ R LTYAVPLK LRL D D EQ +++ Sbjct: 69 ILDFIDYNIDTPKYNVDECIDRGLTYAVPLKAKLRLTCNDKDNEDF-----QTIEQEVFL 123 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++P MT+ G+FVI G +R++VSQLHRSPG+ F K +G LY+ R+IP +G W+ Sbjct: 124 GNIPYMTERGSFVINGAERVIVSQLHRSPGVFFAQSK---HTNGTKLYSARVIPFKGSWI 180 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D +++ IDR++K PVT+ L A+G S+ +IL F + Sbjct: 181 EFATDVNNVMFAYIDRKKKFPVTTLLRAIGYGSDKDILDLFGLSEEVEATKANIKKAI-- 238 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +L++ E V + Sbjct: 239 -------------------------GRKLAARVLRTWTEDFVDEDT------------GE 261 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVTDKNKD 369 +V+ + E+ +E +I E+ + I S + I IL+ + VN Y I NTL D + Sbjct: 262 VVSIDRNEVLLERDSIIKEEDINIIVESGSKSI-ILHREDVNIADYTIIYNTLQKDNSNS 320 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+ IYR +R D A + + LFF +YDL VGR ++N +L +V+ Sbjct: 321 EKEAVEQIYRQLRNTDAPDEQTARDIIHNLFFSDKRYDLGEVGRYRINKKLGSGMGSEVK 380 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + KEDII I+K L+ L N + +DDID+L NRRVR++GE L +Q+ +GL RM R+IKER Sbjct: 381 VLTKEDIINIVKYLIGLINSRAVVDDIDHLSNRRVRTMGEQLYSQFSVGLARMARTIKER 440 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINA+ + S + FF ++QLSQ + N L+ ITH RR+SALG GG+ Sbjct: 441 MNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRMSALGPGGL 500 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD-- 607 +R RAG E+RDVH THYGR+C ET EG NIGL+SSL A+VN+ GFIETPYRKV D Sbjct: 501 SRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNSMGFIETPYRKVIDGI 560 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 V N V+L+A EE+ +IAQAN+ D++G+F + + R G+ ++ +K+D ID + Sbjct: 561 VDVKNQPVFLTAEEEDGAHIAQANAMYDDNGNFISDRIKARYEGDFPVIAPDKVDLIDIA 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVPLL+ EAP VGTG+E VA S + Sbjct: 621 TNQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLERRVAMDSRTLL 680 Query: 728 VAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 +A+ G+VE VDA I +R E L S + Y L+KF+R+NQ+TC+N +P+++ Sbjct: 681 IAEADGVVEFVDANEIKMRYDLTDEDRLVSFDSDIITYSLIKFRRTNQDTCINLKPVIQH 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G+ V++ ++ +G +TD G+LALGRN++VAFMPW GYNFED+++ISE++V +D+FTSIHI Sbjct: 741 GERVKKGQVLCEGYATDKGELALGRNLMVAFMPWQGYNFEDAIVISEKVVRDDIFTSIHI 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EEFE+ RDTK G EE+T +IPNVSEE +KN+DE GII GAE+ GDIL+GKITPKGES Sbjct: 801 EEFELEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRTGAEIKEGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 TPEEKLLRAIFG+KA DV+D S++ P + G V+D ++F+R DK+ R S ++Q+ Sbjct: 861 DPTPEEKLLRAIFGDKAGDVKDASMKAPPSLRGVVIDTKLFSRPKKDKDLRIKS--KKQV 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLIS----- 1014 E + + + L + +L +L GQ + G + K S I Sbjct: 919 ETIKGKYSKDLLALREQMIEKLAALLDGQTSQGVKHKFGDEVISKGVKFSRKNIEANVFP 978 Query: 1015 -----------------EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKI 1057 D+K+ NV L Y T ++ +FK + Sbjct: 979 DKNPYRDESNYNVQEEANLLGDLIIDNWTSDKKINENVLRLVKNYLTKRNETAGKFKRER 1038 Query: 1058 EKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTP 1117 ++ GD++P G++++ KV++A KR ++ GDKMAGRHGNKG+V+RI+ EDMPFL+DGTP Sbjct: 1039 FTLEVGDELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVRDEDMPFLEDGTP 1098 Query: 1118 VDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG 1177 VDIVLNPLGVPSRMN+GQI+ET LG A LG+K + I D + ++ Sbjct: 1099 VDIVLNPLGVPSRMNIGQIYETLLGLAGKKLGRKYATPIFDGASEEEV------------ 1146 Query: 1178 TGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILY 1237 IN + R A L G++ L Sbjct: 1147 -----------------------------------------INEL-RDAGLPTIGRTKLV 1164 Query: 1238 DGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEM 1297 DGL+G PFD+PVTVG IYM+KL H+V DK++ARS G YSL+TQQPLGGK+ GGQR GEM Sbjct: 1165 DGLSGNPFDQPVTVGVIYMMKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEM 1224 Query: 1298 EVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQAL 1357 EVW ++A+GAA +LQE+LT+KSDDVVGR + YE IV G + PESFNVLV E++ L Sbjct: 1225 EVWALEAFGAANILQEILTVKSDDVVGRAKTYECIVKGENLPRPNIPESFNVLVHELRGL 1284 Query: 1358 GLSIDLE 1364 L I L Sbjct: 1285 ALEITLH 1291 >gi|150003395|ref|YP_001298139.1| DNA-directed RNA polymerase subunit beta [Bacteroides vulgatus ATCC 8482] gi|254881315|ref|ZP_05254025.1| RNA polymerase subunit beta [Bacteroides sp. 4_3_47FAA] gi|294777815|ref|ZP_06743259.1| DNA-directed RNA polymerase, beta subunit [Bacteroides vulgatus PC510] gi|319640317|ref|ZP_07995042.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. 3_1_40A] gi|158513736|sp|A6KYK3|RPOB_BACV8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|149931819|gb|ABR38517.1| DNA-directed RNA polymerase beta chain [Bacteroides vulgatus ATCC 8482] gi|254834108|gb|EET14417.1| RNA polymerase subunit beta [Bacteroides sp. 4_3_47FAA] gi|294448269|gb|EFG16825.1| DNA-directed RNA polymerase, beta subunit [Bacteroides vulgatus PC510] gi|317388092|gb|EFV68946.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. 3_1_40A] Length = 1270 Score = 1313 bits (3398), Expect = 0.0, Method: Composition-based stats. Identities = 580/1366 (42%), Positives = 817/1366 (59%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F + PD +EVQ S+ FL ++ P++R N+GL F FPI Sbjct: 8 QRVNFASIKNPMKYPDFLEVQLKSFQDFLQLDTPPEKRKNDGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP + +D+CL R LTY+VPLK L+L D D I Q +Y+ Sbjct: 68 VLEFLDYYIDPPHYSIDECLERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVYL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTPKGTFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAVGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + + G+KL + +LK+ E V + Sbjct: 221 -------NLAEDVKVNKTNLKKV-VGRKLAARVLKTWTEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ VI+E ++EI S +++I + + + ++ + I NTL D + Sbjct: 261 VVSIERNEVIIDRETVIEEDHIDEIIDSGVQNILVHKEEANSSDYSIIFNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +L L T DV+ Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGEVGRYRINKKLGLTTDMDVKV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + K+DII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKQDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RRLSALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRLSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFI TPYRKV DGKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINELGFISTPYRKVADGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + YL+A EEE++ IAQ N+ LD++G F E V R + +V ++++ +D S Sbjct: 561 DISDEGIEYLTAEEEEDKIIAQGNAPLDDEGKFVREKVKARRDADYPVVTPDQVELMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL+ EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRTEAPIVGTGIEKQLVEDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+VE VDA I I R+ + + + YR+ KF+++NQ+ ++ RP Sbjct: 681 AAEGDGVVEYVDATTIRILYDRNEDEEFVSFEPALKEYRIPKFRKTNQSMTIDLRPTCDK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V++ DI+ +G ST G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVKKGDILTEGYSTQGGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 DEYILEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R + K+ + ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSR--VIKSRSEKNADKAIL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 L + +++ L + +L+ + G+ + G + K + + + Sbjct: 919 PKLNDEFEEKAAKLKDILIEKLLVLTNGKVSQGVKDYLGTEVIAKGAKFTKRDLESLDYT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D + L + Y L+ K K I GD++P G++++ KV++ Sbjct: 979 IIQLSKWTADAHKNDMIRDLVMNYLKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D + D++ Sbjct: 1099 AVLGRAGKELGVKFATPIFDGASMDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ L DG TGE FD+P TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLCDGGTGERFDQPATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSINLE 1270 >gi|295133028|ref|YP_003583704.1| DNA-directed RNA polymerase subunit beta [Zunongwangia profunda SM-A87] gi|294981043|gb|ADF51508.1| DNA-directed RNA polymerase subunit beta [Zunongwangia profunda SM-A87] Length = 1270 Score = 1313 bits (3398), Expect = 0.0, Method: Composition-based stats. Identities = 577/1358 (42%), Positives = 798/1358 (58%), Gaps = 117/1358 (8%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R F D PD +++Q S+ F + +ER NEGL F FPIT Sbjct: 4 KQTERFSFSSVKNRPDYPDFLDIQIKSFQDFFQLETKSEERGNEGLYNTFLENFPITDTR 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q Sbjct: 64 NQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QD 118 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +Y+G +P MT GTF I G +R+VVSQLHRSPG+ F +G LY+ R+IP +G Sbjct: 119 VYLGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKG 175 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ D +++ IDR++K+PVT+ A+G + + +IL F Sbjct: 176 SWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKV 235 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L G+KL + +L + E V Sbjct: 236 L---------------------------GRKLAARVLNTWYEDFVDEDT----------- 257 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTDKN 367 ++V+ E EI ++ +D+ +EEI + + I + D+ + A I NTL D Sbjct: 258 -GEVVSIERNEIVLDRDTELDKDHIEEILETGTKTILLHKEDNSTGDYAIIHNTLQKDPT 316 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 K+A+ IYR +R + A + + LFF +Y L VGR +MN +L LD D Sbjct: 317 NSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEVGRYRMNKKLGLDVAMD 376 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 + + KEDII I+K L++L N K IDDID+L NRRVR+VGE L Q+ +GL RM R+I+ Sbjct: 377 KQVLTKEDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIR 436 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG G Sbjct: 437 ERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPG 496 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL+ +A+VN GFIETPYR V D Sbjct: 497 GLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAKVNGMGFIETPYRTVED 556 Query: 608 --GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 ++ + +YLSA EEE + IAQAN L +DG+ + V R G+ +V +++ + D Sbjct: 557 GKINISEEPIYLSAEEEEGKKIAQANIPLGDDGTIDTDKVIARMEGDFPVVDPKEVHYTD 616 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+A++P VGTG+E VA S Sbjct: 617 VAPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRADSPIVGTGLERQVATDSRV 676 Query: 726 AIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 I A+ G VE VDA +I I+ E + S Y L+KF+++NQ T +N +P+V Sbjct: 677 LINAEGEGEVEYVDAQKITIKYDRTEEERMVSFDSDSKTYDLIKFRKTNQGTSINLKPIV 736 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD V + ++ G +TD G+LALGRNM VAFMPW GYNFED+++ISE++V +D+FTSI Sbjct: 737 SVGDRVTKGQVLCQGYATDKGELALGRNMKVAFMPWKGYNFEDAIVISEKVVRDDIFTSI 796 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E+ + RDTKLG EE+T DIPNVSE+ K++DE G+I +GAEV PGDIL+GKITPKG Sbjct: 797 HIDEYSLEVRDTKLGNEELTNDIPNVSEDATKDLDEHGMIRIGAEVKPGDILIGKITPKG 856 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ES TPEEKLLRAIFG+KA DV+D SL+ +SG V++ ++F R K++R + ++E Sbjct: 857 ESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLSGVVINKKLFARA--IKDKRKRAQDKE 914 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYP 1017 + +L + + + +L + +L I+ G+ A G + K + +++ Sbjct: 915 DVAVLEKKYEAKFAVLKSQLVDKLFAIVGGKTAQGVQNDLGEEVLPKGKKYTLKMLNSVD 974 Query: 1018 RSQWWQF--AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075 D+ V L Y+ ++ L+ + + I GD++P G+L++ K Sbjct: 975 DYTHLTQGTWTTDDHTNALVADLLHNYKIKENDLQGNLRREKFTISVGDELPSGILKLAK 1034 Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135 V++A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL DGTPVDIVLNPLGVPSRMN+GQ Sbjct: 1035 VYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLDDGTPVDIVLNPLGVPSRMNIGQ 1094 Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 I+ET LGWA LGKK + I D + I+ L Sbjct: 1095 IYETVLGWAGQKLGKKYATPIFDGASLDKINELTD------------------------- 1129 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 ++G+P G + L+DG TGE FD+ TVG IY Sbjct: 1130 -----EAGIP------------------------RFGHTYLFDGGTGERFDQRATVGVIY 1160 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKL HM+ DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+L Sbjct: 1161 MLKLGHMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREIL 1220 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 T+KSDDV+GR + YESIV G E G PESFNVL+ E Sbjct: 1221 TVKSDDVIGRAKTYESIVKGEPMPEPGLPESFNVLMHE 1258 >gi|189502704|ref|YP_001958421.1| DNA-directed RNA polymerase subunit beta [Candidatus Amoebophilus asiaticus 5a2] gi|189498145|gb|ACE06692.1| hypothetical protein Aasi_1396 [Candidatus Amoebophilus asiaticus 5a2] Length = 1286 Score = 1313 bits (3397), Expect = 0.0, Method: Composition-based stats. Identities = 576/1389 (41%), Positives = 829/1389 (59%), Gaps = 139/1389 (10%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 + R F + + PD +E+Q S++ F + P++R +EGL F+ FPI Sbjct: 1 MKSSRISFAATQSVSEYPDFLEIQLKSFNDFFQLGTPPEKRIDEGLHKVFREHFPIEDSR 60 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 G +LEF+ Y D PK++ +C+ R +TY+VPLK LRL+ D D+ + EQ Sbjct: 61 GNFVLEFIDYNLDAPKYEPRECVERGVTYSVPLKAKLRLLRNDNDDDEF-----ETIEQE 115 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +++G++P MT G+F+I G +R+VVSQ+H+SPG+ F K +SG LY+ RIIP +G Sbjct: 116 VFLGNIPYMTSQGSFIINGAERVVVSQIHKSPGVFFAQSK---HISGAKLYSARIIPFKG 172 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ D +I++ IDR++K P+T+ L A+G ++ EIL F Sbjct: 173 AWIEFATDVNNIMYAYIDRKKKFPITTLLRAIGYGTDKEILDLFELSEEIKVTKSTLNQH 232 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + G+KL + +L+S E + Sbjct: 233 I---------------------------GRKLAARVLRSWSEDFIDEDT----------- 254 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVTDK 366 +++ + E+ +E ++DE ++E I S + +LY + +N Y I NTL D Sbjct: 255 -GEVITLDRNEVVLERNSILDETAVELILQSGSSSV-VLYREDINIADYEIIYNTLHKDN 312 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 K+A+ IYR +R + A LFF + +Y L VGR K+N +L ++ Sbjct: 313 ANSEKEAVEQIYRQLRSSEPPDEQTAREAIQSLFFSTKRYSLGEVGRYKINTKLGINIAM 372 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 DV + KEDI+ I+K L+ L N K T+DDID+L NRR+R+VGE L Q+ LGL RM R+I Sbjct: 373 DVSVLTKEDILHIVKYLLGLINSKATVDDIDHLSNRRLRTVGEQLYTQFELGLSRMARTI 432 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 +ER++ D + P DL+NA+ + S + FF ++ LSQ + VN LS +TH RR+SALG Sbjct: 433 RERMNVRDNEEFKPSDLVNARTLSSVINTFFGTNPLSQFMDQVNPLSEVTHKRRISALGP 492 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG++R RAG E+RD+H THYGR+CP ET EG NIGL+SSL+ AR+N GFI TPYRKV Sbjct: 493 GGLSRDRAGFEIRDIHYTHYGRLCPVETPEGPNIGLISSLSVHARINEMGFIVTPYRKVQ 552 Query: 607 D--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 + V + YL+A +E+ IAQANS ++E G F EE V R AG+ +V E I ++ Sbjct: 553 NGVVDVEGNTQYLTAEQEDKVKIAQANSQINEKGHFIEEKVKTRYAGDFPIVGPEDITYM 612 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D +P Q+VSI+ASLIPFLE++D++R LMG NMQRQ+VPL+K EAP +GTG+E +A Sbjct: 613 DIAPNQIVSISASLIPFLEHNDASRALMGSNMQRQSVPLIKPEAPIIGTGIEQHIAHDFR 672 Query: 725 AAIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 + A++ G++E VDA +I++ + L Y L+K + +NQ TC+N RP+ Sbjct: 673 GLVRAEKDGVIEYVDANKIIVNYDLNEDEKLVSFERASITYPLLKMKGTNQGTCINLRPI 732 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V GD V++ I+ +G +T+ G+LALGRN+ VAFM W GYN+ED+++ISER+V +DVFTS Sbjct: 733 VAKGDRVKQGQILCEGYATENGELALGRNLKVAFMSWQGYNYEDAIVISERIVRDDVFTS 792 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEEF + ARDTKLG EE+T +IPN+SEE L N+D+ GI+ VG + GD+L+GKITPK Sbjct: 793 IHIEEFTMEARDTKLGEEELTAEIPNLSEEALTNLDKNGIVAVGTSIKEGDVLIGKITPK 852 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +PEEKLLRAIFG+KA DV+D SL+VP + G V+ R+F++ DKN R+ S + Sbjct: 853 GEADPSPEEKLLRAIFGDKAGDVKDASLKVPPSMQGVVIKTRLFSKPKSDKNSRAKS--K 910 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISE- 1015 +++ELL + + L + +L ++L G G + K L+++LI + Sbjct: 911 KELELLKKSHAKQLTNLRAIMIGKLGKLLESEKSQGVYHQFGDELIAKGKPLTAELIEKN 970 Query: 1016 ---------------------YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 +++ V++L Y T +++L F+ Sbjct: 971 LFPGKNLYRDESYYNIPEETNLIGEVILDNWTDNKRKNELVKTLVANYNTKRNMLIGDFR 1030 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 + ++ GD++P G+L++ KV+VA KR +Q+GDKMAGRHGNKGIV++++ EDMPFL+D Sbjct: 1031 REKFALEIGDELPTGILKLAKVYVANKRKLQAGDKMAGRHGNKGIVAKVVREEDMPFLED 1090 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDIVL+PLG+PSRMN+GQI+ET LGWA LG+K + I D D+S + Sbjct: 1091 GTPVDIVLSPLGLPSRMNLGQIYETLLGWAGEKLGRKYATPIFDGATIEDVSKELAEANL 1150 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 P F G++ Sbjct: 1151 ----------------------------------PAF--------------------GKA 1156 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 LYDGLTGE FD+ +TVG IYMLKL+H+V DK++ARS G YSL+TQQPLGG+S GGQR Sbjct: 1157 DLYDGLTGEKFDQQITVGVIYMLKLDHLVDDKMHARSIGPYSLITQQPLGGRSQFGGQRF 1216 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++A+GAA++LQEMLTIKSDDVVGR++ YE+IV G + G PESFNVL+ E+ Sbjct: 1217 GEMEVWALEAFGAAHILQEMLTIKSDDVVGRSKAYEAIVKGTSFPKPGIPESFNVLIHEL 1276 Query: 1355 QALGLSIDL 1363 + LGL I L Sbjct: 1277 RGLGLEITL 1285 >gi|29348143|ref|NP_811646.1| DNA-directed RNA polymerase subunit beta [Bacteroides thetaiotaomicron VPI-5482] gi|253569583|ref|ZP_04846993.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. 1_1_6] gi|298386174|ref|ZP_06995731.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 1_1_14] gi|41017727|sp|Q8A469|RPOB_BACTN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|29340046|gb|AAO77840.1| DNA-directed RNA polymerase beta chain [Bacteroides thetaiotaomicron VPI-5482] gi|251841602|gb|EES69683.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. 1_1_6] gi|298261402|gb|EFI04269.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 1_1_14] Length = 1270 Score = 1312 bits (3396), Expect = 0.0, Method: Composition-based stats. Identities = 584/1366 (42%), Positives = 821/1366 (60%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +DDC+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + + G+KL + +LK+ E V + Sbjct: 221 -------NLAEDVKVNKTNLKRV-LGRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN-AYIRNTLVTDKNKDR 370 +V+ E E+ I+ V++E ++EI S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVIIDRETVLEEVHIDEILESGVQNILLHKDEPNQSDFSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINELGFIETPYRKVENGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 N +VYL+A EEE + IAQ N+ L++DG+F V R + +V ++D +D S Sbjct: 561 DLSDNGLVYLTAEEEEEKIIAQGNAPLNDDGTFVRNKVKSRQDADFPVVEPSEVDLMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL++EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSEAPIVGTGIERQLVRDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+V+ VDA I I R+ + + + YR+ KF+++NQN ++ RP+ Sbjct: 681 TAEGDGVVDFVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRKTNQNMTIDLRPICDK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V++ DI+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVKKGDILTEGYSTEKGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ +GA + PGDI++GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRIGARIEPGDIMIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R + KN S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKKLFSR--VIKNRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 + + + + L R + +LM + G+ + G + K + S+ + Sbjct: 919 PKIDDEFESKVADLKRILVKKLMTLTEGKVSQGVKDYLGAEVIAKGSKFSASDFDSLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+ V L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 SIQLSNWTSDDHTNGMVRDLVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D+ Sbjct: 1099 AVLGRAGKTLGVKFATPIFDGATMDDLDQWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ L DG TGE FD+ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLCDGGTGEQFDQAATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++ +GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEGFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G + G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE 1270 >gi|153805950|ref|ZP_01958618.1| hypothetical protein BACCAC_00195 [Bacteroides caccae ATCC 43185] gi|149130627|gb|EDM21833.1| hypothetical protein BACCAC_00195 [Bacteroides caccae ATCC 43185] Length = 1270 Score = 1312 bits (3395), Expect = 0.0, Method: Composition-based stats. Identities = 583/1366 (42%), Positives = 817/1366 (59%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +DDC+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F L Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKKVL-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK+ E V + Sbjct: 238 -------------------------GRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN-AYIRNTLVTDKNKDR 370 +V+ E E+ I+ V++E+ ++EI S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVIIDRETVLEEEHIDEILESGVQNILLHKDEPNQSDFSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINELGFIETPYRKVENGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 N ++YL+A EEE + IAQ N+ L++DG+F V R + +V ++D +D S Sbjct: 561 DLSDNGLIYLTAEEEEEKIIAQGNAPLNDDGTFVRNKVKSRQDADFPVVEPAEVDLMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL++EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSEAPIVGTGIERQLVRDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+V+ VDA I I R+ + + + YR+ KF+++NQN ++ RP+ Sbjct: 681 TAEGDGVVDFVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRKTNQNMTIDLRPICDK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V++ DI+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVKKGDILTEGYSTEKGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ +GA + PGDI++GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRIGARIEPGDIMIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R + KN S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKKLFSR--VIKNRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 + + + + L R + +LM + G+ + G + K + S+ + Sbjct: 919 PKIDDEFESKVADLKRILVKKLMILTEGKVSQGVKDYLGAEVIAKGSKFSASDFDSLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 DE + L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 SIQLSNWTSDEHANGMIRDLVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D D+ Sbjct: 1099 AVLGRAGKTLGVKFATPIFDGATMEDLDEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ L DG TGE FD+ TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLCDGGTGEQFDQAATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++ +GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEGFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G + G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE 1270 >gi|255037203|ref|YP_003087824.1| DNA-directed RNA polymerase subunit beta [Dyadobacter fermentans DSM 18053] gi|254949959|gb|ACT94659.1| DNA-directed RNA polymerase, beta subunit [Dyadobacter fermentans DSM 18053] Length = 1288 Score = 1311 bits (3393), Expect = 0.0, Method: Composition-based stats. Identities = 581/1387 (41%), Positives = 830/1387 (59%), Gaps = 138/1387 (9%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 RK F + +IID PDL+ +Q S+ F ++ + ++R EGL F FPI Sbjct: 7 KTPRKNFSRINQIIDYPDLLGIQVQSFRDFFSLDTSVEDRSGEGLYKVFAENFPIADSRE 66 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 +LEF+ Y +PPK+ VD+ + R LTYAVPLK LRLI D D + EQ + Sbjct: 67 NFVLEFIDYLLEPPKYSVDESIDRGLTYAVPLKAKLRLICNDADHEEF-----ETIEQEV 121 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 ++G++P MT+ G+FVI G +R++VSQLHRSPG+ F K +G LY+ RIIP +G Sbjct: 122 FLGNIPYMTERGSFVINGAERVIVSQLHRSPGVFFSMSK---HTNGSKLYSARIIPFKGS 178 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPL 249 W++ D ++++ IDR++K PVT+ L A+G S+ +IL F S Sbjct: 179 WIEFSTDVNNVMYAYIDRKKKFPVTTLLRAIGFGSDKDILDLFGLSEEIS---------- 228 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 G++L + +L++ E V Sbjct: 229 -----------------ATPANLKKAVGRRLAARVLRTWTEDFVDEDT------------ 259 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNK 368 ++V+ + E+ +E I ++ I S + I + D V + I NTL D + Sbjct: 260 GEVVSIQRNEVLLERDSTISADDIDVILESGQKSIIMHKEDMNVADYNIIYNTLQKDSSN 319 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 K+A+ IYR +R + A + LFF +YDL VGR ++N +L DT DV Sbjct: 320 SDKEAVEQIYRQLRNAEAPDEQTARDVIQSLFFSDKRYDLGDVGRYRINKKLGSDTSLDV 379 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 R + DI++I+K L+ L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+IKE Sbjct: 380 RVLTTGDIVSIVKYLIGLINAKAVVDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTIKE 439 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R++ D + P DLINA+ + S + FF ++QLSQ + N L+ ITH RR+SALG GG Sbjct: 440 RMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRMSALGPGG 499 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVH THYGR+C ET EG NIGL+SSL FA+VN GFIETPYR + Sbjct: 500 LSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVFAKVNGMGFIETPYRVIDGS 559 Query: 609 -KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 K+T++++Y++A EE+++YIAQAN+S+D++G+FT E + R G+ +V + ++D + Sbjct: 560 GKLTDELIYMTAEEEDSKYIAQANASVDKEGNFTVEKIKTRFEGDFPMVDPSQASYMDVA 619 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 Q+VS+AASLIPFLE+DD+NR LMG NMQRQ VPLL+ +AP VGTG+E VA S A + Sbjct: 620 ANQIVSVAASLIPFLEHDDANRALMGSNMQRQGVPLLRPQAPIVGTGLERRVAMDSRALV 679 Query: 728 VAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 VA+ G +E VD+ +IV++ E L Y L+KF+R+NQ+TC+N +P+V Sbjct: 680 VAEGDGEIEFVDSKKIVVKYDRTDEDRLVSFIDDSVTYNLVKFRRTNQDTCLNLQPMVLK 739 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G +V++ + + G T+ G+LALGRN+LVAFMPW GYNFED+++ISE++V +D+FTSIHI Sbjct: 740 GQKVKKGEPLCQGYGTEGGELALGRNLLVAFMPWQGYNFEDAIVISEKVVRDDIFTSIHI 799 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EEFE+ RDTK G EE+T +IPNVSEE +KN+DE GI+ VG EV GDIL+GKITPKGES Sbjct: 800 EEFELEVRDTKRGEEELTAEIPNVSEETVKNLDENGIVQVGTEVKEGDILIGKITPKGES 859 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 TPEEKLLRAIFG+KA DV+D S + P + G V+D ++F+R K ER+ ++++ Sbjct: 860 DPTPEEKLLRAIFGDKAGDVKDASKKAPPSMKGVVIDTKLFSRP--TKEERAKH--KDEL 915 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISE---- 1015 LL + + L + +L+++ G+ + G + K + ISE Sbjct: 916 RLLMKKYSRDLTALRGRVIDKLVQLTDGKTSSGVKHKFGDELISKGMKFNVRNISENLFP 975 Query: 1016 ------------------YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKI 1057 D R + + Y ++S + RFK Sbjct: 976 ANNPYRDESQYAVPEEVNLIGDVLTDSWSDDADTNRQISLVLKNYLNARSEVMGRFKRDR 1035 Query: 1058 EKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTP 1117 ++ GD++P G++++ KV++A KR ++ GDKMAGRHGNKG+V+RI+ EDMPFL+DGTP Sbjct: 1036 FALEVGDELPAGIVKLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVRDEDMPFLEDGTP 1095 Query: 1118 VDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG 1177 V+IVLNPLGVPSRMN+GQI+ET L WA + LG++ + I D +++ Sbjct: 1096 VNIVLNPLGVPSRMNIGQIYETILAWAGLKLGRRYATPIFDGATEAEVA----------- 1144 Query: 1178 TGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILY 1237 AE ++G+P + G++ LY Sbjct: 1145 -------------------AELKEAGLP------------------------DWGRTYLY 1161 Query: 1238 DGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEM 1297 +GLTGE FD+PVTVG +YM+KL H+V DK++ARS G YSL+TQQPLGGK+ GGQR GEM Sbjct: 1162 NGLTGEQFDQPVTVGLMYMMKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEM 1221 Query: 1298 EVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQAL 1357 EVW ++A+GA+++LQE+LT+KSDDVVGR + YE+IV G + + PESFNVLV E++ L Sbjct: 1222 EVWALEAFGASHILQEILTVKSDDVVGRAKAYEAIVKGENLPKPNIPESFNVLVHELRGL 1281 Query: 1358 GLSIDLE 1364 L I L+ Sbjct: 1282 ALEITLD 1288 >gi|88802467|ref|ZP_01117994.1| DNA-directed RNA polymerase beta subunit [Polaribacter irgensii 23-P] gi|88781325|gb|EAR12503.1| DNA-directed RNA polymerase beta subunit [Polaribacter irgensii 23-P] Length = 1269 Score = 1310 bits (3391), Expect = 0.0, Method: Composition-based stats. Identities = 585/1370 (42%), Positives = 811/1370 (59%), Gaps = 115/1370 (8%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 R F + I + PD +++Q S+ F + +ER EGL F FPIT Sbjct: 3 TKNTTERINFATSQMIKEYPDFLDIQVKSFQDFFQLQTKAEERGEEGLYKTFMDNFPITD 62 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 +LEF+ Y DPP++ + +C+ R LT++VPLK L+L D + + Sbjct: 63 TRNHFVLEFLDYFVDPPRYSIQECIERGLTHSVPLKARLKLYCTDPEHEDFETIV----- 117 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +Y+G +P MT G FVI G +R+VVSQLHRSPG+ F +G LY+ R+IP Sbjct: 118 QDVYLGTIPYMTNSGAFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPF 174 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWC 246 +G W++ D +++ IDR++K+PVT+ A+G + + +IL F Sbjct: 175 KGSWIEFATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKAGLK 234 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 L G+KL + +LK+ E V Sbjct: 235 KVL---------------------------GRKLAARVLKTWHEDFVDEDT--------- 258 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTD 365 ++V+ E EI + ++D++ ++EI + + + + D+ + A I NTL D Sbjct: 259 ---GEVVSIERNEIIFDRDTILDKEHIDEIIEAGAKTVLLHKEDNDTADYAIIHNTLQKD 315 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L L+ P Sbjct: 316 PTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSEQRYNLGEVGRFRMNTKLQLNEP 375 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 D + + K DII IIK L++L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+ Sbjct: 376 IDQKVLTKLDIITIIKYLIELINSKAEVDDIDHLSNRRVRTVGEQLAGQFGVGLARMART 435 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 I+ER++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG Sbjct: 436 IRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALG 495 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA+VN GFIETPYRKV Sbjct: 496 PGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFAKVNNLGFIETPYRKV 555 Query: 606 CDGKV-TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 +G V T++ +YLSA EEE IAQ+N L +G+ T + V R G+ +V ++I+++ Sbjct: 556 ENGVVTTDEPIYLSAEEEEGMKIAQSNLQLSNEGNITLDRVIAREEGDFPVVNPDEINYM 615 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ E+P VGTG+E VAK S Sbjct: 616 DVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPESPIVGTGLERRVAKDSR 675 Query: 725 AAIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 I A+ AG+V+ VDA +I I+ E L S Y L+KF+++NQ T +N +P+ Sbjct: 676 ILINAEGAGVVQYVDANKITIKYDRTEEEKLVSFDSDEISYNLIKFRKTNQGTSINLKPI 735 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V GD V ++ +G +T G+LALGRNM VAFMPW GYNFED+++ISER+V ED+FTS Sbjct: 736 VVRGDRVTEGQVLCEGYATQKGELALGRNMKVAFMPWKGYNFEDAIVISERVVREDIFTS 795 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEVNPGDIL+GKITPK Sbjct: 796 IHIDEYSLDVRDTKLGIEELTNDIPNVSEEATKDLDENGMIRIGAEVNPGDILIGKITPK 855 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GES TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F R DKN+R ++ Sbjct: 856 GESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFRRAVKDKNKRLQ--DK 913 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEY 1016 E + L + L + +L ++ G+ + G + K + +++ Sbjct: 914 EAVANLESSFVSQFEGLKDELIEKLFTLISGKTSQGVFNDLGEEVLPKGKKYTLKMLNSV 973 Query: 1017 PRS-QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075 D+++ V L Y+ + L+ + + I GD++P G+L++ K Sbjct: 974 DDYVHLTGSWTTDKELNDLVGELVHNYKIKVNDLQGSLRRQKFTISVGDELPAGILKLAK 1033 Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135 V++A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQ Sbjct: 1034 VYIAKKRKLKVGDKMAGRHGNKGIVARIVRAEDMPFLEDGTPVDIVLNPLGVPSRMNIGQ 1093 Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 I+ET LGWA LG K + I D + I+ + Sbjct: 1094 IYETVLGWAGQKLGTKYATPIFDGASLDQINVITD------------------------- 1128 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 +GVP G + LYDG TG+ FD+P TVG IY Sbjct: 1129 -----SAGVP------------------------RFGHTYLYDGGTGKRFDQPATVGIIY 1159 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 M+KL HM+ DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ +L+E+L Sbjct: 1160 MIKLGHMIEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSILREIL 1219 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 T+KSDDV+GR + YESIV G E G PESFNVL+ E++ LGL + LE Sbjct: 1220 TVKSDDVMGRAKTYESIVKGEAMPEPGLPESFNVLMHELKGLGLDVRLEE 1269 >gi|196233588|ref|ZP_03132429.1| DNA-directed RNA polymerase, beta subunit [Chthoniobacter flavus Ellin428] gi|196222258|gb|EDY16787.1| DNA-directed RNA polymerase, beta subunit [Chthoniobacter flavus Ellin428] Length = 1268 Score = 1310 bits (3390), Expect = 0.0, Method: Composition-based stats. Identities = 626/1375 (45%), Positives = 849/1375 (61%), Gaps = 146/1375 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 RK+FGK E + P+LIE+Q SY FL +++ +R GLQA FK VFPIT++ Sbjct: 3 ERKYFGKLREGAEPPNLIEIQLDSYVEFLQTDVSLSKRKETGLQAVFKEVFPITSYDEKV 62 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 L+F SYE PK + + + T++ PL +T L K KE+ +YM Sbjct: 63 TLDFASYEIGEPKLSIREAMREGQTFSAPLHVTFLL-----------KEEHGTKEEKVYM 111 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++PLMT GTFVI G +R+VVSQLHRSPGI F+ L+GK+L++ RIIPD+G W+ Sbjct: 112 GEIPLMTPQGTFVINGAERVVVSQLHRSPGICFESSL---HLNGKVLFSFRIIPDRGSWV 168 Query: 193 DIEFDSKDIIHVRID---RRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 +++FD+ D+++V +D RRRK T+FL ALG S+ EI+ FY + Sbjct: 169 EVQFDTNDLLYVYLDRRKRRRKFLATTFLRALGYGSDEEIIKLFYTI-------EKLKLS 221 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVI-ESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 + + KV + D+ GE + + + LT ++ + GVK + + Sbjct: 222 EGLEEEEIATKVL--ISDVRDGEITVARAFEPLTKATIRQILTLGVKDVQV--------- 270 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 V+ + + I+A L D Sbjct: 271 -----VDTKADDTIIKA-------------------------------------LKKDPA 288 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN---LDT 424 D ++AL DIYR +RPGD T A + LFFD KYDL VGR K+N +L +D Sbjct: 289 HDEEEALKDIYRRLRPGDPPTVPNARGLLKRLFFDPKKYDLGRVGRYKINQKLQDNGVDV 348 Query: 425 PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 D R + KED IA +K L LR G+GT+DDID+LG+RRVR+VGE+L NQ R+GL R ER Sbjct: 349 KGDERVMTKEDFIAAMKYLTGLRRGEGTLDDIDHLGSRRVRTVGELLANQCRVGLARTER 408 Query: 485 SIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 +KER++ D I+ + PQ LIN K + + + +FF SQLSQ + N L+ +TH RRLS Sbjct: 409 LVKERMTLFDVNIEGMTPQKLINPKALSAVIRDFFGRSQLSQFMDQTNPLAELTHKRRLS 468 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVHP+HYGRICP ET EG NIGL+SS+++FA++N +GFIETPY Sbjct: 469 ALGPGGLSRDRAGFEVRDVHPSHYGRICPIETPEGPNIGLISSMSTFAKINDFGFIETPY 528 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV +GKV + YL+ EEN +AQANS +DE G FT E V R G+ + V K+ Sbjct: 529 RKVVNGKVLEHIDYLTGDREENYLVAQANSPIDEKGHFTAEKVSVRYRGDFLEVEPSKVH 588 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D SPKQ+VS+AA LIPFLE+DD+NR LMG NMQRQ VPLL +E+P VGTGME VA+ Sbjct: 589 YMDVSPKQLVSVAAGLIPFLEHDDANRALMGSNMQRQGVPLLVSESPLVGTGMEGKVARD 648 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD-------PSTSGVDIYRLMKFQRSNQNTC 775 S A IV++ G V V A I++ + G+ +Y L KF RSN TC Sbjct: 649 SKAVIVSEANGKVASVSADLIIVTKDGEMPEGKKKLKHDPEEGIYLYDLRKFMRSNAGTC 708 Query: 776 VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835 VNQ+P+VK G V++ D+IADGP+T+ G+LALGRN+LVAFMPW+GYNFED++ ISE++V Sbjct: 709 VNQKPIVKKGQHVKKGDVIADGPNTENGELALGRNVLVAFMPWNGYNFEDAITISEKVVK 768 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 ED++TSIHI+EFE+ ARDTKLGPEEITRDIPNVSEE L+N+ G+I VGAEV PGDILV Sbjct: 769 EDIYTSIHIDEFEIGARDTKLGPEEITRDIPNVSEEALRNLGPDGVIRVGAEVKPGDILV 828 Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNER 955 GKITPK E+ + PEE+LLRAIFGEKA DV+DTSL VPSG G V+DV++ +R I + + Sbjct: 829 GKITPKSETELAPEERLLRAIFGEKAADVKDTSLTVPSGTYGIVMDVKVSSRKEITRVKL 888 Query: 956 SISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNA-------VSGPKGFKKSTVL 1008 S + ++Q +++ D + L + L IL G+ +G + + Sbjct: 889 SPTESKKQAKVIEEDYTKRKDELHEQLTEALSNILLGEKIPLDVVNAQTGEIIIPANRKI 948 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPP 1068 + L+ + + + ++ + + Q+E + LE + ++K++ GDD+ P Sbjct: 949 TKTLLRKLA-GVYDHVDIDPSPIRNKIREIIGQFEHKFAELELEHERSMDKVESGDDVDP 1007 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 G+++ VKV++A KR + GDKMAGRHGNKG+V+RI+P EDMPFL DGTPV+I LNPLGVP Sbjct: 1008 GIIKQVKVYIASKRKLSVGDKMAGRHGNKGVVARIVPEEDMPFLADGTPVEICLNPLGVP 1067 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDY 1188 SRMNVGQ+ ETHLG A LG K+ + + D I +KV G Sbjct: 1068 SRMNVGQVLETHLGVAAKALGFKVATPVFDGIHESQIFQYLKDAKKVEG----------- 1116 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 F E +G++ ++DG TG+ F++P Sbjct: 1117 ----------------------FTWVTE--------------TGKAQVFDGRTGDAFEQP 1140 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 + VGYIYMLKL H+V+DK++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA Sbjct: 1141 IVVGYIYMLKLGHLVADKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWALEAYGAA 1200 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 Y LQE+LT+KSDDV GRTR+YESIV G+++ E GTPESFNVL+KEMQ+LGL + + Sbjct: 1201 YTLQELLTVKSDDVQGRTRIYESIVKGDNSLEAGTPESFNVLIKEMQSLGLDVKV 1255 >gi|188995435|ref|YP_001929687.1| DNA-directed RNA polymerase subunit beta [Porphyromonas gingivalis ATCC 33277] gi|226699429|sp|B2RL45|RPOB_PORG3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|188595115|dbj|BAG34090.1| DNA-directed RNA polymerase beta subunit [Porphyromonas gingivalis ATCC 33277] Length = 1269 Score = 1310 bits (3389), Expect = 0.0, Method: Composition-based stats. Identities = 564/1372 (41%), Positives = 800/1372 (58%), Gaps = 122/1372 (8%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 R+ F + PD +EVQ S+ FL ++ P+ R EGL F FPIT Sbjct: 5 TNNKRI--NFASIKNPLFYPDFLEVQLKSFHDFLQLDTPPERRKKEGLYKVFAENFPITD 62 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 +LEF+ Y DPPK+ +++CL R LTY+VPLK L+L D D A I Sbjct: 63 TRNNFVLEFLDYYIDPPKYSIEECLSRGLTYSVPLKAKLKLYCTDPDHEDFATVI----- 117 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +++G +P MT GTFVI G +R++VSQLHRSPG+ F +G LY+ RIIP Sbjct: 118 QDVFLGPIPYMTSSGTFVINGAERVIVSQLHRSPGVFFGQSL---HTNGTKLYSARIIPF 174 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWC 246 +G W++ D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 175 KGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFEADKDILDIFNLAEEVKVTKANLK 234 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 + G+KL + ++ + + SD G Sbjct: 235 KCI---------------------------GRKLAARVINTYIDD-------LSDEDTG- 259 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVT 364 ++V+ E + ++ + E ++E I +S + I +L+ + N + Y I NTL Sbjct: 260 ----EVVSMERITVVVDREVELTEDNIEAILNSNTQTI-LLHRNDSNTSDYSIIFNTLQK 314 Query: 365 DKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDT 424 D K+AL +YR +R + + + A + LFF +YDL VGR ++N +LNL+ Sbjct: 315 DPCNSEKEALYYVYRQLRNAEPADDASAREVITNLFFSDKRYDLGDVGRYRINKKLNLNI 374 Query: 425 PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 D++ + EDII IIK L++L N K ++DDID+L NRRVR+VGE L NQ+ +GL RM R Sbjct: 375 DPDIKVLTNEDIIEIIKYLIELVNSKASVDDIDHLSNRRVRTVGEQLYNQFGIGLARMAR 434 Query: 485 SIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSAL 544 ++++R++ D + P DL+NAK + S V FF ++ LSQ + N L+ ITH RRLSAL Sbjct: 435 TVRDRMNVRDNEVFTPIDLVNAKTISSVVNSFFGTNALSQFMDQTNPLAEITHKRRLSAL 494 Query: 545 GQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604 G GG++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A+++ GFI TPYR+ Sbjct: 495 GPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKISDLGFITTPYRE 554 Query: 605 VCDGKV---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 V +GKV N + Y +A EEE + +AQ N+ LDE+G F E V R + LV +++ Sbjct: 555 VKNGKVDFSDNGLKYYTAEEEEEKTVAQGNAPLDENGRFVRERVKARYESDFPLVTPDEV 614 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D +D SP Q+ SIAA+LIPFLE+DD+NR LMG NM RQAVPLL+ E+P VGTG+E + K Sbjct: 615 DLMDVSPTQIASIAAALIPFLEHDDANRALMGSNMMRQAVPLLRPESPIVGTGIEGKLVK 674 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 S IVA+R G V VDA I IR + + + Y L K++++NQ+T ++ Sbjct: 675 DSRTQIVAERGGEVVFVDASCIKIRYDRTADEEFVSFDDAIVTYYLPKYRKTNQSTTIDL 734 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 P+ GD V I+ +G ST G+LALGRN+ VA+MPW GYN+ED+++++ERMV ED Sbjct: 735 HPICSKGDRVEAGQILTEGYSTQGGELALGRNVQVAYMPWKGYNYEDAIVLNERMVREDF 794 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTS+H++E+ + R+TK G EE+T DIPNVSE+ +++DE GI+ +GA + PGDIL+GKI Sbjct: 795 FTSVHVDEYILEVRETKRGLEELTSDIPNVSEDATRDLDENGIVRIGAHIEPGDILIGKI 854 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGES TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F++ K S + Sbjct: 855 TPKGESDPTPEEKLLRAIFGDKAGDVKDASLKATPSLRGVVIDTKLFSKAAKKK---SRT 911 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLI 1013 +E + L Q L + +L E+ G+ + K + L+ + Sbjct: 912 STKETVSKLDETYAKRQQQLHERLIEKLTELTKGKTCCGVKDYLNVELIKAGSKLTKKDL 971 Query: 1014 SEYPRSQW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLR 1072 + D ++++ V Y +E + + GD++P G+++ Sbjct: 972 EALDFNVIQLSDWTNDAHTNELIKAVAVNYLKHSKEIEAELRRRKLDETIGDELPAGIVQ 1031 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 + KV++A KR IQ GDKMAGRHGNKGIVS+I+ EDMPFL DGTPVDI LNPLGVPSRMN Sbjct: 1032 MAKVYIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLADGTPVDICLNPLGVPSRMN 1091 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQIFE L WA + K + I D + D++ Sbjct: 1092 LGQIFEAVLAWAGRKMNVKFATPIFDGASLNDMNEWTD---------------------- 1129 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 K+G+P G++ LYDG TGE FD+P TVG Sbjct: 1130 --------KAGLP------------------------RDGKTYLYDGGTGERFDQPATVG 1157 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y LKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA+++LQ Sbjct: 1158 VTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHILQ 1217 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 E+LT+KSDDVVGR++ YE+IV G+ G PES NVL+ E++ LGLS L+ Sbjct: 1218 EILTVKSDDVVGRSKAYEAIVKGDPMPTPGIPESLNVLLHELKGLGLSFSLD 1269 >gi|34540221|ref|NP_904700.1| DNA-directed RNA polymerase subunit beta [Porphyromonas gingivalis W83] gi|41017634|sp|Q7MX27|RPOB_PORGI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|34396533|gb|AAQ65599.1| DNA-directed RNA polymerase, beta subunit [Porphyromonas gingivalis W83] Length = 1269 Score = 1309 bits (3387), Expect = 0.0, Method: Composition-based stats. Identities = 563/1372 (41%), Positives = 799/1372 (58%), Gaps = 122/1372 (8%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 R+ F + PD +EVQ S+ FL ++ P+ R EGL F FPIT Sbjct: 5 TNNKRI--NFASIKNPLFYPDFLEVQLKSFHDFLQLDTPPERRKKEGLYKVFAENFPITD 62 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 +LEF+ Y DPPK+ +++CL R LTY+VPLK L+L D D A I Sbjct: 63 TRNNFVLEFLDYYIDPPKYSIEECLSRGLTYSVPLKAKLKLYCTDPDHEDFATVI----- 117 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +++G +P MT GTFVI G +R++VSQLHRSPG+ F +G LY+ RIIP Sbjct: 118 QDVFLGPIPYMTSSGTFVINGAERVIVSQLHRSPGVFFGQSL---HTNGTKLYSARIIPF 174 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWC 246 +G W++ D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 175 KGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFEADKDILDIFNLAEEVKVTKANLK 234 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 + G+KL + ++ + + SD G Sbjct: 235 KCI---------------------------GRKLAARVINTYIDD-------LSDEDTG- 259 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVT 364 ++V+ E + ++ + E ++E I +S + I +L+ + N + Y I NTL Sbjct: 260 ----EVVSMERITVVVDREVELTEDNIEAILNSNTQTI-LLHRNDSNTSDYSIIFNTLQK 314 Query: 365 DKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDT 424 D K+AL +YR +R + + + A + LFF +YDL VGR ++N +LNL+ Sbjct: 315 DPCNSEKEALYYVYRQLRNAEPADDASAREVITNLFFSDKRYDLGDVGRYRINKKLNLNI 374 Query: 425 PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 D++ + EDII IIK L++L N K ++DDID+L NRRVR+VGE L NQ+ +GL RM R Sbjct: 375 DPDIKVLTNEDIIEIIKYLIELVNSKASVDDIDHLSNRRVRTVGEQLYNQFGIGLARMAR 434 Query: 485 SIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSAL 544 ++++R++ D + P DL+NAK + S V FF ++ LSQ + N L+ ITH RRLSAL Sbjct: 435 TVRDRMNVRDNEVFTPIDLVNAKTISSVVNSFFGTNALSQFMDQTNPLAEITHKRRLSAL 494 Query: 545 GQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604 G GG++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A+++ GFI TPYR+ Sbjct: 495 GPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKISDLGFITTPYRE 554 Query: 605 VCDGKV---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 V +GKV N + Y +A EEE + +AQ N+ LDE+G F E V R + LV +++ Sbjct: 555 VKNGKVDFSDNGLKYYTAEEEEEKTVAQGNAPLDENGRFVRERVKARYESDFPLVTPDEV 614 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D +D SP Q+ SIAA+LIPFLE+DD+NR LMG NM RQAVPLL+ E+P VGTG+E + K Sbjct: 615 DLMDVSPTQIASIAAALIPFLEHDDANRALMGSNMMRQAVPLLRPESPIVGTGIEGKLVK 674 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 S IVA+R G V VDA I IR + + + Y L K++++NQ+T ++ Sbjct: 675 DSRTQIVAERGGEVVFVDASCIKIRYDRTADEEFVSFDDAIVTYYLPKYRKTNQSTTIDL 734 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 P+ GD V I+ +G ST G+LALGRN+ VA+MPW GYN+ED+++++ERMV ED Sbjct: 735 HPICSKGDRVEAGQILTEGYSTQGGELALGRNVQVAYMPWKGYNYEDAIVLNERMVREDF 794 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTS+H++E+ + R+TK G EE+T DIPNVSE+ +++DE GI+ +GA + PGDIL+GKI Sbjct: 795 FTSVHVDEYILEVRETKRGLEELTSDIPNVSEDATRDLDENGIVRIGAHIEPGDILIGKI 854 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGES TPEEKLLRAIFG+KA DV+D SL+ + G V+D ++F++ K S + Sbjct: 855 TPKGESDPTPEEKLLRAIFGDKAGDVKDASLKATPSLRGVVIDTKLFSKAAKKK---SRT 911 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLI 1013 +E + L Q L + +L E+ G+ + K + + + Sbjct: 912 STKEAVSKLDETYAKRQQQLHERLIDKLTELTKGKTCCGVKDYLNVELIKAGSKFAKKDL 971 Query: 1014 SEYPRSQW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLR 1072 + D ++++ V Y +E + + GD++P G+++ Sbjct: 972 EALDFNVIQLSDWTNDAHTNELIKAVAVNYLKHSKEIEAELRRRKLDETIGDELPAGIVQ 1031 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 + KV++A KR IQ GDKMAGRHGNKGIVS+I+ EDMPFL DGTPVDI LNPLGVPSRMN Sbjct: 1032 MAKVYIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLADGTPVDICLNPLGVPSRMN 1091 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQIFE L WA + K + I D + D++ Sbjct: 1092 LGQIFEAVLAWAGRKMNVKFATPIFDGASLNDMNEWTD---------------------- 1129 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 K+G+P G++ LYDG TGE FD+P TVG Sbjct: 1130 --------KAGLP------------------------RDGKTYLYDGGTGERFDQPATVG 1157 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y LKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA+++LQ Sbjct: 1158 VTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHILQ 1217 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 E+LT+KSDDVVGR++ YE+IV G+ G PES NVL+ E++ LGLS L+ Sbjct: 1218 EILTVKSDDVVGRSKAYEAIVKGDPMPTPGIPESLNVLLHELKGLGLSFSLD 1269 >gi|332042972|gb|EGI79170.1| DNA-directed RNA polymerase, beta subunit [Lacinutrix algicola 5H-3-7-4] Length = 1270 Score = 1308 bits (3386), Expect = 0.0, Method: Composition-based stats. Identities = 583/1368 (42%), Positives = 810/1368 (59%), Gaps = 119/1368 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F + PD +++Q S+ F + +ER NEGL F FPIT Sbjct: 7 ERLNFSSIINRTEYPDFMDIQIKSFQDFFQLETKSEERGNEGLYNTFMENFPITDTRNQF 66 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +++C+ R LTY+VPLK L+L D + + Q +Y+ Sbjct: 67 VLEFLDYFVDPPRYAIEECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QDVYL 121 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTF I G +R+VVSQLHRSPG+ F +G LY+ R+IP +G W+ Sbjct: 122 GTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKGSWI 178 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D +++ IDR++K+PVT+ A+G + + +IL F L Sbjct: 179 EFATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKSGLKKVL-- 236 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +L + E V + Sbjct: 237 -------------------------GRKLAARVLNTWYEDFVDEDT------------GE 259 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVTDKNKD 369 +V+ E EI ++ +D+ ++EEI ++ I +L+ ++ Y I NTL D Sbjct: 260 VVSIERNEIVLDRDTELDKDNIEEILEIGVKTI-LLHKETAQQGDYAIIHNTLQKDPTNS 318 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+ IYR +R + A + + LFF +Y L VGR +MN +L LD D + Sbjct: 319 EKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEVGRYRMNKKLQLDIGMDKQ 378 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + KEDII IIK L++L N K IDDID+L NRRVR+VGE L +Q+ +GL RM R+I+ER Sbjct: 379 VLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSSQFGVGLARMARTIRER 438 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG+ Sbjct: 439 MNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGL 498 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 +R RAG E+RDVH THYGR+CP ET EG NIGL+SSL+ +A+VN+ GFIETPYRKV DG Sbjct: 499 SRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAKVNSMGFIETPYRKVTDGV 558 Query: 610 V--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 V + YLSA EEE + IAQA +DE+G + V R G+ ++ + I + D + Sbjct: 559 VDIKSTPTYLSAEEEEEKLIAQATVDVDENGKILHDKVIARMEGDFPVMDPKDIHYTDVA 618 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ +AP VGTG+E VA S I Sbjct: 619 PNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRPQAPIVGTGLERQVASDSRVLI 678 Query: 728 VAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+VE VDA I+I+ + S V Y L+KF+++NQ T +N +P+VK Sbjct: 679 NAEGNGVVEYVDAKEIIIKYERTEDEAKVSFDSDVKSYPLVKFRKTNQGTSINLKPIVKK 738 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD+V++ ++++G +T G+LALGRNM VAFMPW GYNFED+++ISE++V ED+FTSIHI Sbjct: 739 GDKVKKGQVLSEGYATQNGELALGRNMKVAFMPWKGYNFEDAIVISEKVVREDIFTSIHI 798 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDIL+GKITPKGES Sbjct: 799 DEYSLDVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGES 858 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 TPEEKLLRAIFG+KA DV+D SL+ + G V++ ++F+R K++R + ++E I Sbjct: 859 DPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVINKKLFSRA--IKDKRKRAQDKEDI 916 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 L + + L + +L I+ G+ + G + K + +++ Sbjct: 917 AQLETVYNIKFDELQSVLVEKLFAIVNGKTSQGIFNDLGEEVLPKGKKFTLKMLNAVDDY 976 Query: 1020 QWWQ--FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 D+ + V L Y+ ++ L+ + + I GD++P G++++ KV+ Sbjct: 977 THLTGGTWTTDDHTNKLVADLIHNYKIKENDLQGSLRREKFTISVGDELPAGIIKLAKVY 1036 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ Sbjct: 1037 IAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIY 1096 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 ET LGWA LG+ + I D + I+ Sbjct: 1097 ETVLGWAGQDLGRTYATPIFDGASIDQINEFTD--------------------------- 1129 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 ++G+P G + LYDG TGE FD+P TVG IYML Sbjct: 1130 ---EAGIP------------------------RYGHTYLYDGGTGERFDQPATVGVIYML 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+ Sbjct: 1163 KLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTV 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 KSDDVVGR + YE+IV G + G PESFNVL+ E++ LGL I LE Sbjct: 1223 KSDDVVGRAKTYEAIVKGEPMPDPGLPESFNVLMHELKGLGLDIRLEE 1270 >gi|325280608|ref|YP_004253150.1| DNA-directed RNA polymerase subunit beta [Odoribacter splanchnicus DSM 20712] gi|324312417|gb|ADY32970.1| DNA-directed RNA polymerase subunit beta [Odoribacter splanchnicus DSM 20712] Length = 1270 Score = 1308 bits (3385), Expect = 0.0, Method: Composition-based stats. Identities = 570/1373 (41%), Positives = 800/1373 (58%), Gaps = 119/1373 (8%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 R+ F + PD +EVQ S+ F + P+ R NEGL FK FPI Sbjct: 3 SNTSNKRI--SFASTKNQLQYPDFLEVQLKSFKDFFQLGTTPENRKNEGLYTVFKENFPI 60 Query: 66 TAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDI 125 T +LEF+ Y DPP++ +D+CL + LTY PLK L+L D + I Sbjct: 61 TDTRNNFVLEFLDYFIDPPRYSIDECLEQGLTYGAPLKAKLKLYCTDPEHEDFDTVI--- 117 Query: 126 KEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRII 185 + +Y+G++P MT GTFVI G +R++VSQLHRSPG+ F +G LY+ RII Sbjct: 118 --EDVYLGNVPYMTPKGTFVINGAERVIVSQLHRSPGVFFGQS---VHANGTKLYSARII 172 Query: 186 PDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDF 244 P +G W++ D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 173 PFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFETDKDILQIF------------ 220 Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLC 304 ++ + TG + + G++L + +LK+ E V Sbjct: 221 --------------DLADEINVSKTGLKKV-VGRRLAARVLKTWVEDFVDEDT------- 258 Query: 305 GLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLV 363 ++V+ E EI ++ V++ + ++ I S + I + + + A I NTL Sbjct: 259 -----GEVVSIERNEIIVDRETVLENEHIDAIVDSGAKTILLHKEKQNLADYAIIYNTLQ 313 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K+A++ IYR +R + + A + + LFF +YDL VGR K+N +L L Sbjct: 314 KDPCNSEKEAVMHIYRQLRSSEPPDEATARDVIDKLFFSDKRYDLGDVGRYKLNKKLGLS 373 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 T VR + KED+I IIK L+ L N + +DDID+L NRRVR+VGE L NQ+ +GL RM Sbjct: 374 TDPAVRVLTKEDMIEIIKYLIKLLNARTDVDDIDHLSNRRVRTVGEQLYNQFGVGLARMA 433 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R+I+ER++ D + P DLIN+K + S + FF ++ LSQ + N L+ ITH RR+SA Sbjct: 434 RTIRERMNVRDNEVFTPVDLINSKILSSVINSFFGTNALSQFMDQTNPLAEITHKRRMSA 493 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFIETPYR Sbjct: 494 LGPGGLSRDRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINDLGFIETPYR 553 Query: 604 KVCDGKVT---NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 KV G V V YLSA EEE IAQAN+ +D++G F + R G+ + E Sbjct: 554 KVEAGVVDLSPEGVKYLSAEEEEGLVIAQANAKIDDEGHFVNKRAKSRKDGDFPVEEIEN 613 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++ +D +P Q+ SIAASLIPFLE+DD+NR LMG NM RQAVP++K +AP VGTG+E + Sbjct: 614 VNLMDVAPNQIASIAASLIPFLEHDDANRALMGSNMMRQAVPIIKPQAPIVGTGLEGALV 673 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 + S IVA+ G+V+ VD RIVI+ E Y L K++R+NQ+T + Sbjct: 674 RDSRTQIVAEGPGVVDFVDGRRIVIKYDQTEEERFVSFDGDTKEYVLPKYKRTNQSTTMT 733 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 RP+V+ G V +I+ +G S++ G+LALGRN+ VA+MPW GYN+ED+++ISE +V D Sbjct: 734 LRPIVRKGQRVEEGEILTEGYSSEGGELALGRNLKVAYMPWKGYNYEDAIVISENIVRND 793 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 VFTS+H++E+ + R+TK G EE+T DIPNVSE+ K++DE GII +GA V PGDIL+GK Sbjct: 794 VFTSVHVDEYSLEVRETKRGLEELTADIPNVSEDATKDLDENGIIRIGARVKPGDILIGK 853 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 ITPKGES +PEEKLLRAIFG+KA DV+D SL+ +SG ++D ++F R + + +S Sbjct: 854 ITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLSGVIIDKKLFQR--MIGDRKSK 911 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDL 1012 + + + + + + L + +L E+ G+ + K + Sbjct: 912 AAGKTILAEIDEQFERKVGDLTDLLIDKLFELTNGKTSQGVKNYLNEDVIPKGVKFTLKT 971 Query: 1013 ISEYPRSQWW-QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + + D++ + L + +E + K K GD++P G++ Sbjct: 972 LQNLNYLEINPNKWTTDKQKNDMIRDLLHNFVIKYKEIEGQMKRKKYNATVGDELPSGII 1031 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++ KV+VA KR +Q GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDI LNPLGVPSRM Sbjct: 1032 KMAKVYVAKKRKLQIGDKMAGRHGNKGIVSRVVRVEDMPFLADGTPVDICLNPLGVPSRM 1091 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 N+GQIFE LGWA LG K + I D + DI+ Sbjct: 1092 NLGQIFEAVLGWAGKELGLKFATPIFDGASLDDIN------------------------- 1126 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 A K+GVP G + LYDG TGE FD+P TV Sbjct: 1127 -----AYTDKAGVP------------------------RYGTTYLYDGGTGERFDQPATV 1157 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G Y LKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA++L Sbjct: 1158 GVTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHIL 1217 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 QE+LT+KSDDV+GRT+ YE IV G G PESFNVL+ E++ LGLS++L Sbjct: 1218 QEILTVKSDDVMGRTKTYEHIVKGEPMPTPGLPESFNVLLHELRGLGLSVNLI 1270 >gi|212695312|ref|ZP_03303440.1| hypothetical protein BACDOR_04852 [Bacteroides dorei DSM 17855] gi|237711666|ref|ZP_04542147.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. 9_1_42FAA] gi|237725892|ref|ZP_04556373.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. D4] gi|265753086|ref|ZP_06088655.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 3_1_33FAA] gi|212662222|gb|EEB22796.1| hypothetical protein BACDOR_04852 [Bacteroides dorei DSM 17855] gi|229435700|gb|EEO45777.1| DNA-directed RNA polymerase subunit beta [Bacteroides dorei 5_1_36/D4] gi|229454361|gb|EEO60082.1| DNA-directed RNA polymerase subunit beta [Bacteroides sp. 9_1_42FAA] gi|263236272|gb|EEZ21767.1| DNA-directed RNA polymerase, beta subunit [Bacteroides sp. 3_1_33FAA] Length = 1270 Score = 1308 bits (3384), Expect = 0.0, Method: Composition-based stats. Identities = 580/1366 (42%), Positives = 818/1366 (59%), Gaps = 117/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F + PD +EVQ S+ FL ++ P++R N+GL F FPI Sbjct: 8 QRVNFASIKNPMKYPDFLEVQLKSFQDFLQLDTPPEKRKNDGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP + +D+CL R LTY+VPLK L+L D D I Q +Y+ Sbjct: 68 VLEFLDYYIDPPHYSIDECLERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVYL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTPKGTFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAVGFENDKDILEIF------------------- 220 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ + T + + G+KL + +LK+ E V + Sbjct: 221 -------NLAEDVKVNKTNLKKV-VGRKLAARVLKTWTEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDR 370 +V+ E E+ I+ VI+E+ ++EI S +++I + + + ++ + I NTL D + Sbjct: 261 VVSIERNEVIIDRETVIEEEHIDEIIDSGVQNILVHKEEANSSDYSIIFNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +L L T DV+ Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGEVGRYRINKKLGLTTDMDVKV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + K+DII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKQDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAIGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RRLSALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRLSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFI TPYRKV DGKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINELGFISTPYRKVADGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + YL+A EEE++ IAQ N+ LD++G F E V R + +V ++++ +D S Sbjct: 561 DISDEGIEYLTAEEEEDKIIAQGNAPLDDEGKFVREKVKARRDADYPVVTPDQVELMDVS 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL+ EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRTEAPIVGTGIEKQLVEDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+VE VDA I I R+ + + + YR+ KF+++NQ+ ++ RP Sbjct: 681 AAEGDGVVEYVDATTIRILYDRNEDEEFVSFEPALKEYRIPKFRKTNQSMTIDLRPTCDK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V++ DI+ +G ST G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVKKGDILTEGYSTQGGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E+ + R+TK G EE+T DIPNVSEE K++DE GI+ VGA + PGDIL+GKITPKGES Sbjct: 801 DEYILEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIEPGDILIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R + K+ + ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSR--VIKSRSEKNADKAIL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 L + +++ L + +L+ + G+ + G + K + + + Sbjct: 919 PKLNDEFEEKAAKLKDILIEKLLVLTNGKVSQGVKDYLGTEVIAKGAKFTKRDLESLDYT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D + L + Y L+ K K I GD++P G++++ KV++ Sbjct: 979 IIQLSKWTADAHKNDMIRDLVMNYLKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKGIVSR++ EDMPFL DGTPVDIVLNPLGVPSRMN+GQIFE Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFE 1098 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 LG A LG K + I D + D++ Sbjct: 1099 AVLGRAGKELGVKFATPIFDGASMDDLNEWTD---------------------------- 1130 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 K+G+P ++ L DG TGE FD+P TVG YMLK Sbjct: 1131 --KAGLP------------------------RYCKTYLCDGGTGERFDQPATVGVTYMLK 1164 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GAA++LQE+LTIK Sbjct: 1165 LGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHILQEILTIK 1224 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI+LE Sbjct: 1225 SDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSINLE 1270 >gi|83816372|ref|YP_445876.1| DNA-directed RNA polymerase subunit beta [Salinibacter ruber DSM 13855] gi|83757766|gb|ABC45879.1| DNA-directed RNA polymerase, beta subunit [Salinibacter ruber DSM 13855] Length = 1335 Score = 1307 bits (3383), Expect = 0.0, Method: Composition-based stats. Identities = 584/1368 (42%), Positives = 828/1368 (60%), Gaps = 118/1368 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R+ F PE+ D PD ++VQ ++ F+ ++ P +R + GLQA F FPI Sbjct: 69 RESFADIPEVWDYPDFLDVQLKTFHDFVQDDVPPADREDVGLQAVFNEHFPIKDNRDRYT 128 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEFV+YE D PK V++C+ + LTY++PLK TLRL + + A + Q +Y+G Sbjct: 129 LEFVNYELDAPKHTVEECIAQGLTYSIPLKATLRLTSKEEEGGEEAIEAIE---QEVYLG 185 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 LP MT GTF++ G +R++VSQLHRSPG F+ + +G L++ R+IP +G WM+ Sbjct: 186 TLPFMTDRGTFIVNGAERVIVSQLHRSPGAFFEKE---IHSNGTELFSARVIPFRGSWME 242 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D +D++ +DR++KVPVT+ L ALG S+ EI+ F + Sbjct: 243 FSTDVRDVLWAYVDRKKKVPVTTLLRALGFSSDEEIVKMFDLADAVDIGDEDEFEEHLGR 302 Query: 253 DLMVGAKVSS--SLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 +L + +VD DTGE V E ++ Sbjct: 303 ELATSVTIEKTIEIVDEDTGEVVDEEMER------------------------------- 331 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN---NNAYIRNTLVTDKN 367 E+ + A ++E EE+ ++ + ++ D + + + + TL D + Sbjct: 332 --------EVLLPAEHELEEGDWEELDEYDVSRLYLVREDVEDEALDKSTLVETLQKDSS 383 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 ++AL IY +R + A LFF+ D+YDL VGR +MN RL++D D Sbjct: 384 HTEEEALEVIYEKLRGSEAPDLDSAREALERLFFNEDRYDLGDVGRHRMNARLDVDVDTD 443 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 + + KED++ I++ L+ L+NG+ T DDID+L NRRV+SVGE L +Q+ LGL RM R+IK Sbjct: 444 EKVLTKEDVVGIVRELIRLQNGESTADDIDHLSNRRVKSVGEQLGSQFSLGLARMARTIK 503 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER++ D D P+DL+NA+ + S + FF ++QLSQ + N+L+ +TH RR+SALG G Sbjct: 504 ERMNLRDADKFTPKDLVNARTIESVINTFFGTNQLSQFMDQTNALAEMTHKRRMSALGPG 563 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVH THYGR+CP ET EG NIGL+ SL + +N +GF+ETPYR V D Sbjct: 564 GLTRERAGFEVRDVHHTHYGRLCPIETPEGPNIGLMLSLCVHSTINDFGFLETPYRVVED 623 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 G+VT+ V YLSA EE+ +AQAN+ + +DG F + V CR G+ +V E++D++D + Sbjct: 624 GRVTDRVEYLSAEEEDQATVAQANAPIGDDGHFERDEVRCRHQGDFPIVEPEEVDYMDVA 683 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+VS +ASL+PFL ++D+NR LMG NMQRQ VPLL++++P VGTG+E VAK S + + Sbjct: 684 PNQIVSPSASLVPFLSHNDANRALMGSNMQRQGVPLLRSDSPIVGTGLEGRVAKDSRSCV 743 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLD---PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 VA+ G+VE VDA R+V+R E V Y L KF+R+NQ TC+NQ+P+V+ Sbjct: 744 VAEGEGVVEYVDAERLVVRYDEEQDKTDLTFGEPVQEYELTKFRRTNQGTCMNQKPIVQA 803 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD V +++ DG + + G+LALG+N+L AFMPWHGYN+ED+++ISER+V++DV+TS+HI Sbjct: 804 GDRVEEGEVLTDGFAMEKGELALGKNVLCAFMPWHGYNYEDAIVISERLVADDVYTSVHI 863 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EEFE RDTK G EE+TR+IPNVSEE K++DE GI+ VGAE+ PGDI+VGKITPKGE+ Sbjct: 864 EEFEHEVRDTKRGEEELTREIPNVSEEATKDLDERGIVRVGAEITPGDIIVGKITPKGET 923 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGT-VVDVRIFNRHGIDKNERSISVEREQ 963 TPEEKLLRAIFG+KA DV+D SL+ G+ G V+D R+F+R + + S +E ++ Sbjct: 924 DPTPEEKLLRAIFGDKAGDVKDASLKAKPGMEGGVVIDTRLFSRR--ELDPASKKMEEKR 981 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +E + D + + L+ + + ++ G G + D E Sbjct: 982 LENIESDHERKLADLNERFWEKFFALVEDATSAGLEDREGEVLLTEGADFEEDAFDEVDP 1041 Query: 1019 SQWWQFA--VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 S A +DE++ + +L Y++ + +E K + +++ GD++P GV+++ KV Sbjct: 1042 SDLSTRAEFTEDEELNDQISTLLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAKV 1101 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 +VA K+ I+ GDKMAGRHGNKG++++I P EDMPFL DGTPVD+VLNPLGVPSRMN+GQI Sbjct: 1102 YVARKKKIEVGDKMAGRHGNKGVIAKIAPVEDMPFLDDGTPVDLVLNPLGVPSRMNLGQI 1161 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 +ET LGWA LG K + I D + D+ Sbjct: 1162 YETLLGWAGDRLGVKYATPIFDGASLEDVGDELE-------------------------- 1195 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 K+G+P G+ LYDG TGEPFD TVG IYM Sbjct: 1196 ----KAGLP------------------------RDGKVQLYDGRTGEPFDEKTTVGQIYM 1227 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 +KL H+V DK++ARS G YSL+TQQPLGGK+ GGQRLGEMEVW + AYGA+ LQEMLT Sbjct: 1228 MKLEHLVEDKMHARSIGPYSLITQQPLGGKAQFGGQRLGEMEVWALYAYGASNTLQEMLT 1287 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDV GR+ YESIV G + G PESFNVLV+E+Q LGL + L+ Sbjct: 1288 FKSDDVEGRSEAYESIVKGENLPSPGVPESFNVLVRELQGLGLEVTLD 1335 >gi|294507786|ref|YP_003571844.1| DNA-directed RNA polymerase beta chain [Salinibacter ruber M8] gi|294344114|emb|CBH24892.1| DNA-directed RNA polymerase beta chain [Salinibacter ruber M8] Length = 1335 Score = 1307 bits (3382), Expect = 0.0, Method: Composition-based stats. Identities = 584/1368 (42%), Positives = 828/1368 (60%), Gaps = 118/1368 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R+ F PE+ D PD ++VQ ++ F+ ++ P +R + GLQA F FPI Sbjct: 69 RESFADIPEVWDYPDFLDVQLKTFHDFVQDDVPPADREDVGLQAVFNEHFPIKDNRDRYT 128 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEFV+YE D PK V++C+ + LTY++PLK TLRL + + A + Q +Y+G Sbjct: 129 LEFVNYELDAPKHTVEECIAQGLTYSIPLKATLRLTSKEEEGGEEAIEAIE---QEVYLG 185 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 LP MT GTF++ G +R++VSQLHRSPG F+ + +G L++ R+IP +G WM+ Sbjct: 186 TLPFMTDRGTFIVNGAERVIVSQLHRSPGAFFEKE---IHSNGTELFSARVIPFRGSWME 242 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D +D++ +DR++KVPVT+ L ALG S+ EI+ F + Sbjct: 243 FSTDVRDVLWAYVDRKKKVPVTTLLRALGFSSDEEIVKMFDLADAVDIGDEDEFEEHLGR 302 Query: 253 DLMVGAKVSS--SLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 +L + +VD DTGE V E ++ Sbjct: 303 ELATSVTIEKTIEIVDEDTGEVVDEEMER------------------------------- 331 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN---NNAYIRNTLVTDKN 367 E+ + A ++E EE+ ++ + ++ D + + + + TL D + Sbjct: 332 --------EVLLPAEHELEEGDWEELDEYDVSRLYLVREDVEDEALDKSTLVETLQKDSS 383 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 ++AL IY +R + A LFF+ D+YDL VGR +MN RL++D D Sbjct: 384 HTEEEALEVIYEKLRGSEAPDLDSAREALERLFFNEDRYDLGDVGRHRMNARLDVDVDTD 443 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 + + KED++ I++ L+ L+NG+ T DDID+L NRRV+SVGE L +Q+ LGL RM R+IK Sbjct: 444 EKVLTKEDVVGIVRELIRLQNGESTADDIDHLSNRRVKSVGEQLGSQFSLGLARMARTIK 503 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER++ D D P+DL+NA+ + S + FF ++QLSQ + N+L+ +TH RR+SALG G Sbjct: 504 ERMNLRDADKFTPKDLVNARTIESVINTFFGTNQLSQFMDQTNALAEMTHKRRMSALGPG 563 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVH THYGR+CP ET EG NIGL+ SL + +N +GF+ETPYR V D Sbjct: 564 GLTRERAGFEVRDVHHTHYGRLCPIETPEGPNIGLMLSLCVHSTINDFGFLETPYRVVED 623 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 G+VT+ V YLSA EE+ +AQAN+ + +DG F + V CR G+ +V E++D++D + Sbjct: 624 GRVTDRVEYLSAEEEDQATVAQANAPIGDDGHFERDEVRCRHQGDFPIVEPEEVDYMDVA 683 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+VS +ASL+PFL ++D+NR LMG NMQRQ VPLL++++P VGTG+E VAK S + + Sbjct: 684 PNQIVSPSASLVPFLSHNDANRALMGSNMQRQGVPLLRSDSPIVGTGLEGRVAKDSRSCV 743 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLD---PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 VA+ G+VE VDA R+V+R E V Y L KF+R+NQ TC+NQ+P+V+ Sbjct: 744 VAEGEGVVEYVDAERLVVRYDEEQDKTDLTFGEPVQEYELTKFRRTNQGTCMNQKPIVQA 803 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD V +++ DG + + G+LALG+N+L AFMPWHGYN+ED+++ISER+V++DV+TS+HI Sbjct: 804 GDRVEEGEVLTDGFAMEKGELALGKNVLCAFMPWHGYNYEDAIVISERLVADDVYTSVHI 863 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EEFE RDTK G EE+TR+IPNVSEE K++DE GI+ VGAE+ PGDI+VGKITPKGE+ Sbjct: 864 EEFEHEVRDTKRGEEELTREIPNVSEEATKDLDERGIVRVGAEITPGDIIVGKITPKGET 923 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGT-VVDVRIFNRHGIDKNERSISVEREQ 963 TPEEKLLRAIFG+KA DV+D SL+ G+ G V+D R+F+R + + S +E ++ Sbjct: 924 DPTPEEKLLRAIFGDKAGDVKDASLKAKPGMEGGVVIDTRLFSRR--ELDPASKKMEEKR 981 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +E + D + + L+ + + ++ G G + D E Sbjct: 982 LENIESDHERKLADLNERFWEKFFALVEDATSAGLEDREGEVLLTEGADFEEDAFDEVDP 1041 Query: 1019 SQWWQFA--VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 S A +DE++ + +L Y++ + +E K + +++ GD++P GV+++ KV Sbjct: 1042 SDLSTRAEFTEDEELNDQISTLLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAKV 1101 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 +VA K+ I+ GDKMAGRHGNKG++++I P EDMPFL DGTPVD+VLNPLGVPSRMN+GQI Sbjct: 1102 YVARKKKIEVGDKMAGRHGNKGVIAKIAPVEDMPFLDDGTPVDLVLNPLGVPSRMNLGQI 1161 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 +ET LGWA LG K + I D + D+ Sbjct: 1162 YETLLGWAGDRLGVKYATPIFDGASLEDVGDELE-------------------------- 1195 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 K+G+P G+ LYDG TGEPFD TVG IYM Sbjct: 1196 ----KAGLP------------------------RDGKVQLYDGRTGEPFDEKTTVGQIYM 1227 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 +KL H+V DK++ARS G YSL+TQQPLGGK+ GGQRLGEMEVW + AYGA+ LQEMLT Sbjct: 1228 MKLEHLVEDKMHARSIGPYSLITQQPLGGKAQFGGQRLGEMEVWALYAYGASNTLQEMLT 1287 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDV GR+ YESIV G + G PESFNVLV+E+Q LGL + L+ Sbjct: 1288 FKSDDVEGRSEAYESIVKGENLPSPGVPESFNVLVRELQGLGLEVTLD 1335 >gi|311748521|ref|ZP_07722306.1| DNA-directed RNA polymerase, beta subunit [Algoriphagus sp. PR1] gi|311302795|gb|EAZ81285.2| DNA-directed RNA polymerase, beta subunit [Algoriphagus sp. PR1] Length = 1275 Score = 1306 bits (3379), Expect = 0.0, Method: Composition-based stats. Identities = 577/1377 (41%), Positives = 829/1377 (60%), Gaps = 138/1377 (10%) Query: 23 IIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFD 82 + D PD +++Q S+ F ++ ++R +GL F FPI+ LEF+ Y D Sbjct: 2 VKDYPDFLDIQLQSFKDFFQLDTPAEKRRADGLFKVFAENFPISDSRENFTLEFIDYAVD 61 Query: 83 PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDG 142 PPK+ V +C+ R LTY+VPLK LRL+ D D + EQ +++G+LP MT+ G Sbjct: 62 PPKYSVGECIDRGLTYSVPLKAKLRLLCHDEDNEDF-----ETIEQEVFLGNLPYMTEKG 116 Query: 143 TFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDII 202 +FVI G +R++VSQLHRSPG+ F K +G LY+ RIIP +G W++ D +++ Sbjct: 117 SFVINGAERVIVSQLHRSPGVFFAQSK---HTNGTKLYSARIIPFKGSWIEFATDINNVM 173 Query: 203 HVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVS 261 + IDR++K PVT+ L A+G S+ +IL F S Sbjct: 174 YAYIDRKKKFPVTTLLRAIGYGSDKDILDLFGLSEEVSATKTALKK-------------- 219 Query: 262 SSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIY 321 +G+KL + +L++ E V ++V+ + E+ Sbjct: 220 -------------VAGRKLAARVLRTWVEDFVDEDT------------GEVVSIDRNEVL 254 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDRKDALLDIYRV 380 +E V+ E+ +E I S + I + D ++ + + + NTL D + K+A+ IYR Sbjct: 255 LERDSVLTEEDIEMILDSGSKSIILHREDVNIADFSIVYNTLQKDNSNSEKEAVEVIYRQ 314 Query: 381 MRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAII 440 +R + + A + + LFF +YDL VGR ++N +L L+ + + K+DII+I+ Sbjct: 315 LRNTEAPDEATAREVIHSLFFSDKRYDLGEVGRYRINKKLGLEIEAEKIVLTKQDIISIV 374 Query: 441 KILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMP 500 K L+ L N K +DDID+L NRRVR+VGE L +Q+ +GL RM R+I+ER++ D + P Sbjct: 375 KYLIGLINSKAVVDDIDHLSNRRVRTVGEQLYSQFGVGLARMARTIRERMNVRDNEDFKP 434 Query: 501 QDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRD 560 DLINA+ + S + FF ++QLSQ + N L+ +TH RRLSALG GG++R RAG E+RD Sbjct: 435 VDLINARTLSSVINSFFGTNQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRD 494 Query: 561 VHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV---TNDVVYL 617 VH THYGR+C ET EG NIGL+SSL A+VN+ GF+ETPYRKV DGKV D+V+L Sbjct: 495 VHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNSMGFLETPYRKVKDGKVAMDKGDIVFL 554 Query: 618 SAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS 677 +A EE++ IAQAN+ LD G+F E V R G+ ++ +I+F+D +P Q+VS+AAS Sbjct: 555 TAEEEDDNNIAQANAPLDPKGNFVNEKVKARFEGDFPVLEPSEINFMDVAPNQIVSVAAS 614 Query: 678 LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQ 737 LIPFLE+DD+NR LMG NMQRQAVPLLKAE+P VGTG+E+ A S + I+A+ G+V+ Sbjct: 615 LIPFLEHDDANRALMGSNMQRQAVPLLKAESPIVGTGLEAKAAVDSRSLIIAEANGVVDY 674 Query: 738 VDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 VDA +I I+ + L T Y L+KF+R+NQ+T +N PLV G +V + ++ Sbjct: 675 VDAKKITIKYDLTDDELLVNFTDEYKSYDLIKFRRTNQDTTINLTPLVLQGQKVVKGQVL 734 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 +G ST+ G+LALG+N+ VA+MPW GYNFED+++ISER+V EDVFTSIH+EEF++ RDT Sbjct: 735 VEGYSTNEGELALGKNLKVAYMPWQGYNFEDAIVISERVVREDVFTSIHVEEFQLEVRDT 794 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 K G EE+T +IPNVSEE +K++DE G+I VGAEV GDI++GKITPKGE+ TPEEKLLR Sbjct: 795 KRGEEELTSEIPNVSEEAVKHLDENGVIRVGAEVKEGDIIIGKITPKGETDPTPEEKLLR 854 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFG+KA DV+D SL+ ++G V++ ++F+R DK+ R+ + + ++E L + Sbjct: 855 AIFGDKAGDVKDASLKASPSLNGVVIETKLFSRPKKDKDVRAKA--KAEVEKLKAKYSKD 912 Query: 975 QVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLIS--------------- 1014 + + + ++L+ IL G+ ++ G + K +++ I Sbjct: 913 LLGIRARMINKLVTILDGKTSLGVKHKFGDEIISKGVKFNANNIENNLFPAKNPYRDESN 972 Query: 1015 -------EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMP 1067 D + + L Y S++ + FK ++ GD++P Sbjct: 973 YNVPEEANLISDIILDDWTDDAHINDLIVKLVKNYTNSRNEISGLFKRDRFTLEVGDELP 1032 Query: 1068 PGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV 1127 G++++ KV+VA KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTP+DIVLNPLGV Sbjct: 1033 AGIVQLAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPMDIVLNPLGV 1092 Query: 1128 PSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISD 1187 PSRMN+GQIFET L WA LGKK + I D + ++ Sbjct: 1093 PSRMNIGQIFETVLAWAGQVLGKKYATPIFDGASMEEV---------------------- 1130 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 A E + A + G++ LYDGL+G FD+ Sbjct: 1131 --------------------------ATELEL------AGVPAYGRTYLYDGLSGSKFDQ 1158 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 PVTVG YMLKL H+V DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA Sbjct: 1159 PVTVGIAYMLKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGA 1218 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 ++VLQE+LT+KSDDV+GR + YE+IV G + + PESFNVLV E++ L L I L+ Sbjct: 1219 SHVLQEILTVKSDDVIGRAKAYEAIVKGENLPKPNIPESFNVLVHELRGLALEITLD 1275 >gi|283362138|dbj|BAI65925.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus] Length = 1159 Score = 1305 bits (3377), Expect = 0.0, Method: Composition-based stats. Identities = 1157/1159 (99%), Positives = 1157/1159 (99%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK Sbjct: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK Sbjct: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQSIYMGDLPLMTKDGTFVIKG QRIVVSQLHRSPGIHFDHDKGRASLSGKLLY Sbjct: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGTQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ Sbjct: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS Sbjct: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN Sbjct: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL Sbjct: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL Sbjct: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMERSIKERISSVDIDSVMPQDLINAKPVVSAV EFFCSSQLSQLEEHVNSLSRITHTRR Sbjct: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVYEFFCSSQLSQLEEHVNSLSRITHTRR 540 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET Sbjct: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK Sbjct: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA Sbjct: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT Sbjct: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP Sbjct: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE Sbjct: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ Sbjct: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM Sbjct: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH Sbjct: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 Query: 1141 LGWACVGLGKKIKSLINDY 1159 LGWACVGLGKKIKSLINDY Sbjct: 1141 LGWACVGLGKKIKSLINDY 1159 >gi|315224714|ref|ZP_07866537.1| DNA-directed RNA polymerase subunit beta [Capnocytophaga ochracea F0287] gi|314945342|gb|EFS97368.1| DNA-directed RNA polymerase subunit beta [Capnocytophaga ochracea F0287] Length = 1269 Score = 1304 bits (3375), Expect = 0.0, Method: Composition-based stats. Identities = 581/1365 (42%), Positives = 811/1365 (59%), Gaps = 116/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + + PD +++Q S+ F M ++R +EGL FK FPI+ + Sbjct: 8 RVNFASVKHVPEYPDFLDIQIKSFQEFFQMETKSEDRVHEGLYHTFKENFPISDTRNQFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q +Y+G Sbjct: 68 LEFLDYFVDPPRYTIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QDVYLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W++ Sbjct: 123 TIPYMTASGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ A+G + + +IL F + Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKTGLKKYI--- 236 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G +L + +L + E V ++ Sbjct: 237 ------------------------GHRLAARVLNTWHEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDRK 371 V+ E EI ++ V+DE +++EI ++++ I + D + I NTL D K Sbjct: 261 VSIERNEIILDRDTVLDEDNIQEILEADVKTILLHKEDSQATDYTIIHNTLQKDPTNSEK 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R + A + + LFF +Y+L VGR ++N +L LDTP + + + Sbjct: 321 EAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGDVGRYRINKKLGLDTPMEKQVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KEDII I+K L++L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I+ER++ Sbjct: 381 TKEDIITIVKYLIELINSKAEVDDIDHLSNRRVRTVGEQLAAQFGVGLSRMSRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG++R Sbjct: 441 VRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP ET EG NIGL+SSL F++VN GFIETPY KV +GKV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFSKVNGMGFIETPYHKVTNGKVD 560 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 D+ YL+A +EE I AN +LD+ + TEE V + G+ ++ ++ +ID +P Q Sbjct: 561 LKDMTYLTAEDEEGLKIGMANIALDDKANITEEKVVVKEDGDFPVIEPNEVQYIDVAPNQ 620 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 + SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ EAP VGTG+E VA + + A+ Sbjct: 621 IASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAPIVGTGLERRVASDARVLMNAE 680 Query: 731 RAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 G V+ VDA +I+I R+ E L + +Y L+KFQ++NQ TC+N +P+V+ G+ Sbjct: 681 GDGTVDYVDADKIIITYDRTDEQKLVSFDADETVYNLIKFQKTNQGTCINLKPIVEKGER 740 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++ ++ +G +T+ G+LALGRNM VAFMPW GYNFED+++ISER V ED+FTSIHI+E+ Sbjct: 741 VKKGQVLCEGYATENGELALGRNMKVAFMPWKGYNFEDAIVISERAVREDLFTSIHIDEY 800 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 + RDTKLG EE+T DIPNVSE+ K++DE G+I +GAEV PGDIL+GKITPKGES T Sbjct: 801 ALEVRDTKLGAEELTNDIPNVSEDATKDLDEYGMIRIGAEVRPGDILIGKITPKGESDPT 860 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R DK +RS E + L Sbjct: 861 PEEKLLRAIFGDKAGDVKDASLKASPSLYGVVIDKKLFSRAVKDKRKRSKDKED--VAQL 918 Query: 968 ARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 D + + L + +L ++ G G + K + ++ Sbjct: 919 EADYNAKFEALRSKLLEKLYSLVAEKTSEGVVNDLGEEIVPKGKKYTKKVLEGIEDYAHL 978 Query: 1023 QF--AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 D+ + ++ L Y ++ L+ + I GD++P G+L++ K++VA Sbjct: 979 TSAGWTDDKHINGLIDDLLHNYRIRENDLQGGLRRDKFTIAVGDELPAGILKLAKIYVAK 1038 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ET Sbjct: 1039 KRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETV 1098 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA LGKK + I D + I+ L Sbjct: 1099 LGWAGQKLGKKFATPIFDGASLEQINELTD------------------------------ 1128 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++GVP G + LYDG TGE FD+ TVG IYM+KL Sbjct: 1129 EAGVP------------------------RFGHTYLYDGGTGERFDQKATVGVIYMIKLG 1164 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 HM+ DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+KSD Sbjct: 1165 HMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTVKSD 1224 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DVVGR + YE+IV G E G PESFNVL+ E++ LGL I LE Sbjct: 1225 DVVGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE 1269 >gi|313159478|gb|EFR58841.1| DNA-directed RNA polymerase, beta subunit [Alistipes sp. HGB5] Length = 1286 Score = 1304 bits (3375), Expect = 0.0, Method: Composition-based stats. Identities = 575/1386 (41%), Positives = 814/1386 (58%), Gaps = 131/1386 (9%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 + R F + PDL+EVQ S+ F M+ + R NEGL F+ FPIT Sbjct: 3 TAKTQQRISFSTVKNRVPYPDLLEVQLKSFRDFFQMDTTAENRKNEGLYKVFQENFPITD 62 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 +LEF+ Y DPP++ +++CL R LTY+VPLK L+L D + + Sbjct: 63 TRNNFVLEFIDYYIDPPRYSIEECLERGLTYSVPLKAKLKLYCTDDEHEDFGVVV----- 117 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +Y G +P MT+ GTFVI G +R++VSQLHRSPG+ F +G LY+ RIIP Sbjct: 118 QDVYFGTIPYMTERGTFVINGAERVIVSQLHRSPGVFFGQSM---HTNGTKLYSARIIPF 174 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWC 246 +G W++ D ++++ IDR++K+PVT+ L A+G ++++ IL F Sbjct: 175 KGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGYEADQQILEIF-------------- 220 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 DL KV+ + + G +KL + +L + E V Sbjct: 221 ------DLADEVKVTKANLKKAVG-------RKLAARVLSTWVEDFVDEDT--------- 258 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTD 365 ++V+ E + ++ V++E+ +++I S + I + + + I NTL D Sbjct: 259 ---GEVVSIERNNVIVDRETVLEEEHVDQILESGAKTILLHKESLSGIDFSIIYNTLQKD 315 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 K+A++ IYR +R + + A + LFF +YDL VGR ++N +L+LDT Sbjct: 316 PCNSEKEAVVYIYRQLRASEPPDEATARDVIEKLFFSDKRYDLGDVGRYRINKKLDLDTD 375 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +R + +EDIIAIIK L+ L N K +DDID+L NRRVR+VGE L NQ+ +G +RM R+ Sbjct: 376 PAIRTLTREDIIAIIKYLIQLINSKADVDDIDHLSNRRVRTVGEQLSNQFSVGFVRMART 435 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 I+ER++ D + P DLINAK + S + FF +SQLSQ + +N L+ ITH RRLSALG Sbjct: 436 IRERMNVRDNEVFTPVDLINAKTLSSVINSFFGTSQLSQFMDQINPLAEITHKRRLSALG 495 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG++R RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A+++ GFIETPYRKV Sbjct: 496 PGGLSRDRAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYAKISPMGFIETPYRKV 555 Query: 606 CD---GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE-ELVFCRCAGEEILVPREKI 661 + +D+ Y SA EEE + +AQAN +D++G F + + + R + +V E++ Sbjct: 556 ENGQIDMNNDDIRYYSAEEEEGKIVAQANMPIDDEGHFLQPDRIKAREGADFPVVTAEEV 615 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 + +D +P Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPL+ +AP VGTG+E + Sbjct: 616 NLMDVAPNQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLVTTDAPIVGTGIEKDMIS 675 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 S IVA+ G V DA +I IR + L V Y L +++R+NQNT + Sbjct: 676 DSRIQIVAEGDGEVTFADATKIQIRYERTEDEILASFEPEVTTYELPRYRRTNQNTSITL 735 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 +P+V GD+V + I+ +G ST G+LALGRN+ VAFMPW GYNFED+++ISER+ ED+ Sbjct: 736 KPIVLTGDKVVKGQILTEGYSTQHGELALGRNLKVAFMPWKGYNFEDAIVISERIQREDI 795 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTS+H++E+ + RDTK G EE+T DIPNVSE+ K++D GII +GA V+PGDIL+GKI Sbjct: 796 FTSVHVDEYIMEVRDTKRGVEELTSDIPNVSEDATKDLDANGIIRIGANVHPGDILIGKI 855 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGES +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++++R + ++ S Sbjct: 856 TPKGESDPSPEEKLLRAIFGDKAGDVKDASLKAQPSLHGVVIDTKLYSRANKE-GKKGKS 914 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLI 1013 E+ QIE L E L + + ++L +L G+ G + + T S ++ Sbjct: 915 AEKVQIEKLDEKFAAEIAELTKRLVAKLWTLLQGKTTTGVTDYFGVELYPAGTKFSQKML 974 Query: 1014 SEYPRSQWWQ--------------FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 E R + D +E+ Y + K + Sbjct: 975 EEIARKTTDEKTGVVMGYLNLGTCKWTGDAHTDALIEATINNYTIEWKKADAAIKREKYN 1034 Query: 1060 IQWGDDMPP-GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPV 1118 I GD++P GV+++ KV++A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGT V Sbjct: 1035 ITNGDELPQTGVIQMAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTIV 1094 Query: 1119 DIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT 1178 DI LNPLGVPSRMN+GQI+ET LGWA LG K + I D + I+ + Sbjct: 1095 DICLNPLGVPSRMNLGQIYETVLGWAGRELGLKFATPIFDGASLDQINEYTA-------- 1146 Query: 1179 GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYD 1238 K+G+P SG++ LYD Sbjct: 1147 ----------------------KAGIP------------------------HSGRTYLYD 1160 Query: 1239 GLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEME 1298 G TGE FD+P TVG IYMLKL HM+ DK++ARS G YSL+TQQPLGGK+ GGQR GEME Sbjct: 1161 GGTGEMFDQPATVGVIYMLKLGHMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEME 1220 Query: 1299 VWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALG 1358 VW ++ +GAA +LQE+LTIKSDDV+GR + YE+IV G + + G PE+ NVL+ E++ L Sbjct: 1221 VWALEGFGAANILQEILTIKSDDVMGRAKAYEAIVKGENLPKPGIPEAMNVLLHELRGLA 1280 Query: 1359 LSIDLE 1364 LS+ LE Sbjct: 1281 LSVKLE 1286 >gi|256819271|ref|YP_003140550.1| DNA-directed RNA polymerase subunit beta [Capnocytophaga ochracea DSM 7271] gi|256580854|gb|ACU91989.1| DNA-directed RNA polymerase, beta subunit [Capnocytophaga ochracea DSM 7271] Length = 1269 Score = 1304 bits (3375), Expect = 0.0, Method: Composition-based stats. Identities = 580/1365 (42%), Positives = 812/1365 (59%), Gaps = 116/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + + PD +++Q S+ F M ++R +EGL FK FPI+ + Sbjct: 8 RVNFASVKHVPEYPDFLDIQIKSFQEFFQMETKSEDRVHEGLYHTFKENFPISDTRNQFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q +Y+G Sbjct: 68 LEFLDYFVDPPRYTIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QDVYLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W++ Sbjct: 123 TIPYMTASGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ A+G + + +IL F + Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKTGLKKYI--- 236 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G++L + +L + E V ++ Sbjct: 237 ------------------------GRRLAARVLNTWHEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDRK 371 V+ E EI ++ V+DE +++EI ++++ I + D + I NTL D K Sbjct: 261 VSIERNEIILDRDTVLDEDNIQEILEADVKTILLHKEDSQATDYTIIHNTLQKDPTNSEK 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R + A + + LFF +Y+L VGR ++N +L LDTP + + + Sbjct: 321 EAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGDVGRYRINKKLGLDTPMEKQVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KEDII I+K L++L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I+ER++ Sbjct: 381 TKEDIITIVKYLIELINSKAEVDDIDHLSNRRVRTVGEQLAAQFGVGLSRMSRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG++R Sbjct: 441 VRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP ET EG NIGL+SSL F++VN GFIETPY KV +GKV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFSKVNGMGFIETPYHKVTNGKVD 560 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 D+ YL+A +EE I AN +LD+ + TEE V + G+ ++ ++ +ID +P Q Sbjct: 561 LKDMTYLTAEDEEGLKIGMANIALDDKANITEEKVVVKEDGDFPVIEPNEVQYIDVAPNQ 620 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 + SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ EAP VGTG+E VA + + A+ Sbjct: 621 IASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAPIVGTGLERRVASDARVLMNAE 680 Query: 731 RAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 G V+ VDA +I+I R+ E L + +Y L+KFQ++NQ TC+N +P+V+ G+ Sbjct: 681 GDGTVDYVDADKIIITYDRTDEQKLVSFDADETVYNLIKFQKTNQGTCINLKPIVEKGER 740 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++ ++ +G +T+ G+LALGRNM VAFMPW GYNFED+++ISER V ED+FTSIHI+E+ Sbjct: 741 VKKGQVLCEGYATENGELALGRNMKVAFMPWKGYNFEDAIVISERAVREDLFTSIHIDEY 800 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 + RDTKLG EE+T DIPNVSE+ K++DE G+I +GAEV PGDIL+GKITPKGES T Sbjct: 801 ALEVRDTKLGAEELTNDIPNVSEDATKDLDEYGMIRIGAEVRPGDILIGKITPKGESDPT 860 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R DK +RS E + L Sbjct: 861 PEEKLLRAIFGDKAGDVKDASLKASPSLYGVVIDKKLFSRAVKDKRKRSKDKED--VAQL 918 Query: 968 ARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 + + + L + +L ++ G G + K + ++ Sbjct: 919 EANYNAKFETLRSKLLEKLYSLVAEKTSEGVVNDLGEEIVPKGKKYTKKVLEGIEDYAHL 978 Query: 1023 QF--AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 D+ + ++ L Y ++ L+ + I GD++P G+L++ K++VA Sbjct: 979 TSAGWTDDKHINGLIDDLLHNYRIRENDLQGGLRRDKFTIAVGDELPAGILKLAKIYVAK 1038 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ET Sbjct: 1039 KRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETV 1098 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA LGKK + I D + I+ L Sbjct: 1099 LGWAGQKLGKKFATPIFDGASLEQINELTD------------------------------ 1128 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++GVP G + LYDG TGE FD+ TVG IYM+KL Sbjct: 1129 EAGVP------------------------RFGHTYLYDGGTGERFDQKATVGVIYMIKLG 1164 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 HM+ DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+KSD Sbjct: 1165 HMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTVKSD 1224 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DVVGR + YE+IV G E G PESFNVL+ E++ LGL I LE Sbjct: 1225 DVVGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE 1269 >gi|312131295|ref|YP_003998635.1| DNA-directed RNA polymerase subunit beta [Leadbetterella byssophila DSM 17132] gi|311907841|gb|ADQ18282.1| DNA-directed RNA polymerase subunit beta [Leadbetterella byssophila DSM 17132] Length = 1285 Score = 1304 bits (3374), Expect = 0.0, Method: Composition-based stats. Identities = 574/1394 (41%), Positives = 826/1394 (59%), Gaps = 143/1394 (10%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + G RK F ++ PD +++Q S+ F ++ + R EGL F Sbjct: 1 MKLTETG----RKSFASVQPALEYPDFLDIQLQSFTEFFQIDTPAESRRAEGLYQTFMDN 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +LEFV Y D PK+ VD+C+ R LTY+VPLK L+L D D Sbjct: 57 FPIADSRENYVLEFVDYTIDQPKYSVDECIDRGLTYSVPLKAKLKLTCNDADNEDF---- 112 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 + EQ +++G++P MT G+FVI G +R++VSQLHRSPG+ F K +G LY+ Sbjct: 113 -ETIEQEVFLGNIPYMTSRGSFVINGAERVIVSQLHRSPGVFFSMSK---HTNGTKLYSA 168 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQR 241 R+IP +G W++ D ++++ IDR++K PVT+ L ++G ++ EIL F + Sbjct: 169 RVIPMKGSWIEFSTDVNNVMYAYIDRKKKFPVTTLLRSIGFGTDKEILDLFGLSEEIAAT 228 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 D G++L + +LK+ E V Sbjct: 229 RDNLKQ---------------------------VVGRRLAARVLKTWTEDFVDEDT---- 257 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IR 359 ++V+ + E+ +E VI E +E I +E++ + IL+ + N + Y I Sbjct: 258 --------GEVVSIDRNEVILERDSVITEDDVELILSTELKSV-ILHREDANVSEYNIIY 308 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 NTL D + K+A+ IYR +R + + A + LFF +YDL VGR ++N + Sbjct: 309 NTLQKDSSNSEKEAVEQIYRQLRNTEAPDEATAREIIQGLFFSDKRYDLGEVGRYRVNTK 368 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 LNLDTP + R + KEDII+I+K L+ L N K +DDID+L NRRVR+VGE L Q+ +GL Sbjct: 369 LNLDTPLETRVLSKEDIISIVKYLIGLINSKAVVDDIDHLSNRRVRTVGEQLSGQFGVGL 428 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RM R+IKER++ D + P DLINA+ + S + FF ++QLSQ + N L+ ITH R Sbjct: 429 ARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKR 488 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG++R RAG E+RDVH THYGR+C ET EG NIGL+SSL ++A++N+ GFIE Sbjct: 489 RLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCTYAKINSMGFIE 548 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 TPY K+ DGK+T + YL+A EE+ + IA A + ++ DGSFT + + CR G+ + + Sbjct: 549 TPYNKIEDGKLTGKIEYLTAEEEDGKNIAMATADVNPDGSFTVDTLKCRYEGDFPMKSPD 608 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 +I+++D +P Q+VSIAAS+IPFLE+DD+NR LMG NMQRQAVPLL+ EAP VGTG+E + Sbjct: 609 EIEYMDIAPNQIVSIAASMIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLEGKL 668 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A+ S +VA+ G+++ VDA +IV+ L + Y+L+KF+R+NQ+TC+ Sbjct: 669 ARDSRTLVVAEGDGVIDYVDAEKIVVNYDWTDNQKLVSFDTNFTTYKLIKFRRTNQDTCI 728 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 N RP+V G V++ I+ +G +T G+LALGRN+ VAFMPW GYNFED+++ISER+V E Sbjct: 729 NLRPIVLKGQRVKKGQILVEGYATQGGELALGRNLQVAFMPWQGYNFEDAIVISERVVRE 788 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D+FTSIHIEEF++ RDTK G EE+T +IPNVSEE +KN+DE GI+ VG + GDIL+G Sbjct: 789 DIFTSIHIEEFDLEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIVRVGTHIKEGDILIG 848 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 KITPKGES TPEEKLLRAIFG+KA DV+D S + P + G ++D ++F+R K ER Sbjct: 849 KITPKGESDPTPEEKLLRAIFGDKAGDVKDASKKAPPSLRGVIIDTKLFSRP--SKEERL 906 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSD 1011 +E+++ L + L + +++ +L G+ + G + K + Sbjct: 907 KH--KEEVKRLMVKHSKDLSALKEVMIDKMVTLLDGKTSNGVKHKFGEELISKGVKFNRS 964 Query: 1012 LI----------------------SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSIL 1049 I + + D + + L Y T +S + Sbjct: 965 NITNNLFPEKNPFVDESTYNVPEEANLLGDIILEGWTNDAETNSLLVQLVKNYLTRRSEI 1024 Query: 1050 EDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDM 1109 FK + ++ GD++P G++++ KV++A KR ++ GDKMAGRHGNKG+V+RI+ EDM Sbjct: 1025 IGVFKREKFVLEVGDELPAGIVKLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVRDEDM 1084 Query: 1110 PFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLR 1169 PFL+DGT +DIVLNPLGVPSRMN+GQ++E LGWA LG+K + I D ++ +++ Sbjct: 1085 PFLEDGTTMDIVLNPLGVPSRMNIGQLYEVCLGWAGKKLGRKYATPIFDGASSEEVAAEL 1144 Query: 1170 SFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLD 1229 L+ Sbjct: 1145 KEAG-------------------------------------------------LQEFG-- 1153 Query: 1230 ESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNR 1289 ++ LY+GLTGE FD+P TVG +YMLKL H+V DK++ARS G YSL+TQQPLGGK+ Sbjct: 1154 ---RTYLYNGLTGERFDQPTTVGIMYMLKLGHLVDDKMHARSIGPYSLITQQPLGGKAQF 1210 Query: 1290 GGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 GGQR GEMEVW ++A+GA++VL+E+LT+KSDDV+GR + YE+IV G + + PESFNV Sbjct: 1211 GGQRFGEMEVWALEAFGASHVLREILTLKSDDVLGRAKAYEAIVKGENLPKASIPESFNV 1270 Query: 1350 LVKEMQALGLSIDL 1363 LV E++ L L I L Sbjct: 1271 LVHELRGLALEITL 1284 >gi|109914393|sp|Q2S1Q5|RPOB_SALRD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1287 Score = 1304 bits (3374), Expect = 0.0, Method: Composition-based stats. Identities = 584/1368 (42%), Positives = 828/1368 (60%), Gaps = 118/1368 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R+ F PE+ D PD ++VQ ++ F+ ++ P +R + GLQA F FPI Sbjct: 21 RESFADIPEVWDYPDFLDVQLKTFHDFVQDDVPPADREDVGLQAVFNEHFPIKDNRDRYT 80 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEFV+YE D PK V++C+ + LTY++PLK TLRL + + A + Q +Y+G Sbjct: 81 LEFVNYELDAPKHTVEECIAQGLTYSIPLKATLRLTSKEEEGGEEAIEAIE---QEVYLG 137 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 LP MT GTF++ G +R++VSQLHRSPG F+ + +G L++ R+IP +G WM+ Sbjct: 138 TLPFMTDRGTFIVNGAERVIVSQLHRSPGAFFEKE---IHSNGTELFSARVIPFRGSWME 194 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D +D++ +DR++KVPVT+ L ALG S+ EI+ F + Sbjct: 195 FSTDVRDVLWAYVDRKKKVPVTTLLRALGFSSDEEIVKMFDLADAVDIGDEDEFEEHLGR 254 Query: 253 DLMVGAKVSS--SLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 +L + +VD DTGE V E ++ Sbjct: 255 ELATSVTIEKTIEIVDEDTGEVVDEEMER------------------------------- 283 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN---NNAYIRNTLVTDKN 367 E+ + A ++E EE+ ++ + ++ D + + + + TL D + Sbjct: 284 --------EVLLPAEHELEEGDWEELDEYDVSRLYLVREDVEDEALDKSTLVETLQKDSS 335 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 ++AL IY +R + A LFF+ D+YDL VGR +MN RL++D D Sbjct: 336 HTEEEALEVIYEKLRGSEAPDLDSAREALERLFFNEDRYDLGDVGRHRMNARLDVDVDTD 395 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 + + KED++ I++ L+ L+NG+ T DDID+L NRRV+SVGE L +Q+ LGL RM R+IK Sbjct: 396 EKVLTKEDVVGIVRELIRLQNGESTADDIDHLSNRRVKSVGEQLGSQFSLGLARMARTIK 455 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER++ D D P+DL+NA+ + S + FF ++QLSQ + N+L+ +TH RR+SALG G Sbjct: 456 ERMNLRDADKFTPKDLVNARTIESVINTFFGTNQLSQFMDQTNALAEMTHKRRMSALGPG 515 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVH THYGR+CP ET EG NIGL+ SL + +N +GF+ETPYR V D Sbjct: 516 GLTRERAGFEVRDVHHTHYGRLCPIETPEGPNIGLMLSLCVHSTINDFGFLETPYRVVED 575 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 G+VT+ V YLSA EE+ +AQAN+ + +DG F + V CR G+ +V E++D++D + Sbjct: 576 GRVTDRVEYLSAEEEDQATVAQANAPIGDDGHFERDEVRCRHQGDFPIVEPEEVDYMDVA 635 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+VS +ASL+PFL ++D+NR LMG NMQRQ VPLL++++P VGTG+E VAK S + + Sbjct: 636 PNQIVSPSASLVPFLSHNDANRALMGSNMQRQGVPLLRSDSPIVGTGLEGRVAKDSRSCV 695 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLD---PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 VA+ G+VE VDA R+V+R E V Y L KF+R+NQ TC+NQ+P+V+ Sbjct: 696 VAEGEGVVEYVDAERLVVRYDEEQDKTDLTFGEPVQEYELTKFRRTNQGTCMNQKPIVQA 755 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD V +++ DG + + G+LALG+N+L AFMPWHGYN+ED+++ISER+V++DV+TS+HI Sbjct: 756 GDRVEEGEVLTDGFAMEKGELALGKNVLCAFMPWHGYNYEDAIVISERLVADDVYTSVHI 815 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EEFE RDTK G EE+TR+IPNVSEE K++DE GI+ VGAE+ PGDI+VGKITPKGE+ Sbjct: 816 EEFEHEVRDTKRGEEELTREIPNVSEEATKDLDERGIVRVGAEITPGDIIVGKITPKGET 875 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGT-VVDVRIFNRHGIDKNERSISVEREQ 963 TPEEKLLRAIFG+KA DV+D SL+ G+ G V+D R+F+R + + S +E ++ Sbjct: 876 DPTPEEKLLRAIFGDKAGDVKDASLKAKPGMEGGVVIDTRLFSRR--ELDPASKKMEEKR 933 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +E + D + + L+ + + ++ G G + D E Sbjct: 934 LENIESDHERKLADLNERFWEKFFALVEDATSAGLEDREGEVLLTEGADFEEDAFDEVDP 993 Query: 1019 SQWWQFA--VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 S A +DE++ + +L Y++ + +E K + +++ GD++P GV+++ KV Sbjct: 994 SDLSTRAEFTEDEELNDQISTLLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAKV 1053 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 +VA K+ I+ GDKMAGRHGNKG++++I P EDMPFL DGTPVD+VLNPLGVPSRMN+GQI Sbjct: 1054 YVARKKKIEVGDKMAGRHGNKGVIAKIAPVEDMPFLDDGTPVDLVLNPLGVPSRMNLGQI 1113 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 +ET LGWA LG K + I D + D+ Sbjct: 1114 YETLLGWAGDRLGVKYATPIFDGASLEDVGDELE-------------------------- 1147 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 K+G+P G+ LYDG TGEPFD TVG IYM Sbjct: 1148 ----KAGLP------------------------RDGKVQLYDGRTGEPFDEKTTVGQIYM 1179 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 +KL H+V DK++ARS G YSL+TQQPLGGK+ GGQRLGEMEVW + AYGA+ LQEMLT Sbjct: 1180 MKLEHLVEDKMHARSIGPYSLITQQPLGGKAQFGGQRLGEMEVWALYAYGASNTLQEMLT 1239 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDV GR+ YESIV G + G PESFNVLV+E+Q LGL + L+ Sbjct: 1240 FKSDDVEGRSEAYESIVKGENLPSPGVPESFNVLVRELQGLGLEVTLD 1287 >gi|288926248|ref|ZP_06420173.1| DNA-directed RNA polymerase, beta subunit [Prevotella buccae D17] gi|315606514|ref|ZP_07881529.1| DNA-directed RNA polymerase subunit beta [Prevotella buccae ATCC 33574] gi|288336939|gb|EFC75300.1| DNA-directed RNA polymerase, beta subunit [Prevotella buccae D17] gi|315251920|gb|EFU31894.1| DNA-directed RNA polymerase subunit beta [Prevotella buccae ATCC 33574] Length = 1269 Score = 1303 bits (3373), Expect = 0.0, Method: Composition-based stats. Identities = 577/1367 (42%), Positives = 810/1367 (59%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 8 RVNFASVHNPYPYPDFLDVQLKSFKDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 68 LEFLDYYIDPPRYTIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VV+QLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 123 TIPYMTSNGTFVINGAERVVVAQLHRSPGVFFGQG---VHANGTVLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTLLRAIGYENDKDILQIFDLAEEVKVNKKNMK------ 233 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+KL + +LKS E V ++ Sbjct: 234 ---------------------AAIGRKLAARVLKSWNEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E + E ++EEI S + I + N + I NTL D + K Sbjct: 261 VSIERNEVIMERETELTEDNIEEILESGTSTVLIHKDEEGANRFSIIFNTLAKDPSNSEK 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +L LDT DVR + Sbjct: 321 EAVNYIYRQLRNADPADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLGLDTDMDVRVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 381 TKDDIIEIIKYLIQLINSNATVDDIDHLSNRRVRTVGEQLANQFSIGLARMSRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 441 VRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A +N GFIETPYRKV DGKV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYATINELGFIETPYRKVVDGKVD 560 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 + VVY++A EEEN I Q N+ L+EDGSF ++V CR + +VP ++D +D +P Sbjct: 561 LDNDHVVYITAEEEENHIIGQGNAPLNEDGSFIRDVVKCRQDADFPVVPPAEVDMMDVAP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S I Sbjct: 621 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMIT 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I RS + + + YR+ KF+R+NQN ++ RP+ G Sbjct: 681 AEGDGVIEYVDATTIRILYDRSEDEEFVSFEPALKEYRIPKFRRTNQNMTIDLRPICSKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 + V+ DI+ +G +T+ G++ALGRN+LVA++PW GYN+ED+++ISER+V +DV TS+H++ Sbjct: 741 ERVKAGDILTEGYATENGEIALGRNLLVAYIPWKGYNYEDAVVISERIVRDDVLTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ GII VGA V PGDI++GKI+PKGES Sbjct: 801 EYSLDVRETKRGVEEFTSDIPNVSEEATKDLDDNGIIRVGARVEPGDIMIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R KN S ++ + Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--IKNRESKKQDKIILA 918 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQ-----NAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +L+ + G +G + K + ++ + Sbjct: 919 KIDEEYEAKNNDLKDILVDKLLTLTEGMVSEGVKDYTGAEIITKGSKFTTAALKNLEYDG 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 +D ++ L + Y L+ K + I GD++P G+L++ KV++A Sbjct: 979 IQSNDWTKDAHANGLIQKLIMNYIRKYKQLDAEMKRRKFAITIGDELPSGILQMAKVYIA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1039 KKRKIQVGDKLAGRHGNKGIVSKVVRMEDMPFLEDGRPVDLVLNPMGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ Sbjct: 1099 ILGAAGKKLGVKFATPIFDGAKLADLQEWTD----------------------------- 1129 Query: 1200 WKSGVP--VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1130 -KAGLPRLCSTHLYDGE--------------------------TGEQFDQPATVGITYFL 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA++VLQE+LTI Sbjct: 1163 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHVLQEILTI 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G+ G PES NVL+ E++ LGLSI L+ Sbjct: 1223 KSDDVVGRSKAYEAIVKGDTMPTPGIPESLNVLLHELRGLGLSIKLD 1269 >gi|288929385|ref|ZP_06423230.1| DNA-directed RNA polymerase, beta subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288329487|gb|EFC68073.1| DNA-directed RNA polymerase, beta subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 1270 Score = 1303 bits (3372), Expect = 0.0, Method: Composition-based stats. Identities = 569/1365 (41%), Positives = 808/1365 (59%), Gaps = 117/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 9 RVNFASVHNPMPYPDFLDVQLKSFKDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 68 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 69 LEFLDYYIDPPRYTIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 123 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 124 TIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGTMLYSARIIPFKGSWIE 180 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +++ +IL F L Sbjct: 181 FATDINNVMYAYIDRKKKLPVTTLLRAIGYENDRDILQIFDLAEEVKVNKKNMKEAL--- 237 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 GK+L + +LKS E V ++ Sbjct: 238 ------------------------GKRLAARVLKSWNEDFVDEDT------------GEV 261 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E I E+++ EI S + + + D+ N + I NTL D + K Sbjct: 262 VSIERNEVIMERETEITEENVGEILDSGVSTVLLHKDADAANKFSIIFNTLAKDPSNSEK 321 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+L IYR +R D + + A +F LFF +YDL VGR ++N +L LDT D R + Sbjct: 322 EAVLYIYRQLRNADPADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLGLDTDMDTRVL 381 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 382 TKDDIIEIIKYLIQLVNSNATVDDIDHLSNRRVRTVGEQLANQFSIGLARMSRTIRERMN 441 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 442 VRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 501 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A +N GFIETPYRKV +G V Sbjct: 502 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYANINELGFIETPYRKVSNGVVD 561 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 +VYL+A EEE+ I Q N+ L+EDG+F ++V CR + +V ++D +D SP Sbjct: 562 LNNKHLVYLTAEEEEDHIIGQGNAPLNEDGTFIRDVVKCRQDADFPVVEPAEVDLMDVSP 621 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S I Sbjct: 622 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMIT 681 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G+++ VDA I I R+ + + + YR+ KF+R+NQN ++ RP+ G Sbjct: 682 AEGDGVIDYVDATTIRILYDRTEDEEYVSFEPALKEYRVPKFRRTNQNMTIDLRPICVKG 741 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V+ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED++++SER+V +DV TS+H++ Sbjct: 742 QRVKAGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAIVLSERLVRDDVLTSVHVD 801 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ G++ +GA + PGDIL+GKI+PKGES Sbjct: 802 EYSLDVRETKRGVEEFTSDIPNVSEEATKDLDDNGVVRIGARIEPGDILIGKISPKGESD 861 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R ++ S ++ + Sbjct: 862 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRAIKTRD--SKKQDKVILA 919 Query: 966 LLARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +L+E+ G +G + K + ++ + Sbjct: 920 KIDEEYEAKNEDLKDILVDKLLELTEDKVSQGVKDYTGAEIINKGSKFTAAALKNLEYDG 979 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 D ++ L + Y +L+ K + I GD++P G+L++ KV+VA Sbjct: 980 IQSNDWTDDAHTNDLIQKLIMNYIRKYKLLDAELKRRKFAITIGDELPSGILQMAKVYVA 1039 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR I GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNPLGVPSRMN+GQIFE Sbjct: 1040 KKRKIGVGDKLAGRHGNKGIVSKVVRMEDMPFLEDGRPVDLVLNPLGVPSRMNLGQIFEA 1099 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+S + R+ Sbjct: 1100 ILGAAGKKLGVKFATPIFDGAQLEDLSEWTDKA-------------------ELPRLC-- 1138 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 ST ++DG TGE FD+P TVG Y LKL Sbjct: 1139 -------STYLYDGE--------------------------TGEKFDQPATVGVTYFLKL 1165 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA+++LQE+LTIKS Sbjct: 1166 GHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHILQEILTIKS 1225 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 DDVVGR++ YE+IV G G PES NVL+ E++ LGLSI ++ Sbjct: 1226 DDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSIKMD 1270 >gi|213963169|ref|ZP_03391427.1| DNA-directed RNA polymerase, beta subunit [Capnocytophaga sputigena Capno] gi|213954253|gb|EEB65577.1| DNA-directed RNA polymerase, beta subunit [Capnocytophaga sputigena Capno] Length = 1269 Score = 1303 bits (3371), Expect = 0.0, Method: Composition-based stats. Identities = 581/1365 (42%), Positives = 811/1365 (59%), Gaps = 116/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + + PD +++Q S+ F M ++R +EGL FK FPI+ + Sbjct: 8 RVNFASVKHVPEYPDFLDIQIKSFQEFFQMETKSEDRVHEGLYQTFKENFPISDTRNQFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q +Y+G Sbjct: 68 LEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QDVYLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W++ Sbjct: 123 TVPYMTSSGTFVINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ A+G + + +IL F + Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKTGLKKYI--- 236 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G++L + +L + E V ++ Sbjct: 237 ------------------------GRRLAARVLNTWHEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDRK 371 V+ E EI ++ V+DE + +EI ++++ I + D + I NTL D K Sbjct: 261 VSIERNEIILDRDTVLDEDNTQEILEADVKTILLHKEDSQATDYTIIHNTLQKDPTNSEK 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R + A + + LFF +Y+L VGR ++N +L LDTP + + + Sbjct: 321 EAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGDVGRYRINKKLGLDTPMEKQVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KEDII I+K L++L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I+ER++ Sbjct: 381 TKEDIITIVKYLIELINSKAEVDDIDHLSNRRVRTVGEQLAAQFGVGLSRMSRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG++R Sbjct: 441 VRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP ET EG NIGL+SSL F++VN GFIETPY KV +GKV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFSKVNGMGFIETPYHKVTNGKVD 560 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 D+ YL+A +EE I AN +LD+ + EE V + G+ ++ ++ +ID +P Q Sbjct: 561 LKDMTYLTAEDEEGLKIGMANIALDDKANIIEEKVVVKEDGDFPVIEPNEVQYIDVAPNQ 620 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 + SI+ASLIPFLE+DD+NR LMG NM RQAVPLLK EAP VGTG+E +A + + A+ Sbjct: 621 IASISASLIPFLEHDDANRALMGSNMMRQAVPLLKPEAPIVGTGLERRIASDARVLMNAE 680 Query: 731 RAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 R G+V+ VDA +I+I R+ E L +Y L+KFQ++NQ TC+N +P+V+ G+ Sbjct: 681 RDGVVDYVDAEKIIITYDRTDEEKLVSFDPDETVYNLIKFQKTNQGTCINLKPIVEKGER 740 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++ ++ +G +T+ G+LALGRNM VAFMPW GYNFED+++ISER V +D+FTSIHI+E+ Sbjct: 741 VKKGQVLCEGYATENGELALGRNMKVAFMPWKGYNFEDAIVISERAVRDDIFTSIHIDEY 800 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 + RDTKLG EE+T DIPNVSE+ K++DE G+I +GAEV PGDIL+GKITPKGES T Sbjct: 801 ALEVRDTKLGAEELTNDIPNVSEDATKDLDENGMIRIGAEVRPGDILIGKITPKGESDPT 860 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R DK +RS E + L Sbjct: 861 PEEKLLRAIFGDKAGDVKDASLKASPSLYGVVIDKKLFSRAVKDKRKRSKDKED--VAQL 918 Query: 968 ARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 D + + L + +L ++ G G + K S ++ Sbjct: 919 EADYNAKFEALRTKLLEKLFSLVAEKTSEGVVNDLGEEIVPKGKKYSKKVLEGIEDYAHL 978 Query: 1023 QF--AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 D+ + ++ L Y ++ L+ + I GD++P G+L++ K++VA Sbjct: 979 TSAGWTDDKHINGLIDDLLHNYRIRENDLQGMLRRDKFTIAVGDELPAGILKLAKIYVAK 1038 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ET Sbjct: 1039 KRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETV 1098 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA LGKK + I D + I+ L Sbjct: 1099 LGWAGQKLGKKFATPIFDGASLEQINELTD------------------------------ 1128 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++GVP G + LYDG TGE FD+ TVG IYM+KL Sbjct: 1129 EAGVP------------------------RFGHTYLYDGGTGERFDQKATVGVIYMIKLG 1164 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 HM+ DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ L+E+LT+KSD Sbjct: 1165 HMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTVKSD 1224 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DVVGR + YE+IV G E G PESFNVL+ E++ LGL I LE Sbjct: 1225 DVVGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE 1269 >gi|260909710|ref|ZP_05916404.1| DNA-directed RNA polymerase subunit beta [Prevotella sp. oral taxon 472 str. F0295] gi|260636135|gb|EEX54131.1| DNA-directed RNA polymerase subunit beta [Prevotella sp. oral taxon 472 str. F0295] Length = 1270 Score = 1303 bits (3371), Expect = 0.0, Method: Composition-based stats. Identities = 570/1365 (41%), Positives = 804/1365 (58%), Gaps = 117/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 9 RVNFASVHNPMPYPDFLDVQLKSFKDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 68 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 69 LEFLDYYIDPPRYTIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 123 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 124 TIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGTMLYSARIIPFKGSWIE 180 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +++ +IL F L Sbjct: 181 FATDINNVMYAYIDRKKKLPVTTLLRAIGYENDRDILQIFDLAEEVKVNKKNMKEAL--- 237 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 GK+L + +LKS E V ++ Sbjct: 238 ------------------------GKRLAARVLKSWNEDFVDEDT------------GEV 261 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E I E+++ EI S + + + D+ N + I NTL D + K Sbjct: 262 VSIERNEVIMERETEITEENVGEILDSGVSTVLLHKDADAANKFSIIFNTLAKDPSNSEK 321 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+L IYR +R D + + A +F LFF +YDL VGR ++N +L LDT D R + Sbjct: 322 EAVLYIYRQLRNADPADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLGLDTDMDTRVL 381 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 382 TKDDIIEIIKYLIQLVNSNATVDDIDHLSNRRVRTVGEQLANQFSIGLARMSRTIRERMN 441 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 442 VRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 501 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A +N GFIETPYR V +G V Sbjct: 502 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYANINELGFIETPYRNVNNGVVD 561 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 ++VYL+A EEE+ I Q N+ L+EDG+F E+V CR + +V ++D +D SP Sbjct: 562 LDNKNLVYLTAEEEEDHIIGQGNAPLNEDGTFIREVVKCRQDADFPVVAPAEVDLMDVSP 621 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S I Sbjct: 622 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMIT 681 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G+++ VDA I I R+ + + + YR+ KF+R+NQN ++ RP+ G Sbjct: 682 AEGDGVIDYVDATTIRILYDRTEDEEYVSFEPALKEYRVPKFRRTNQNMTIDLRPICVKG 741 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V+ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED++++SER+V +DV TS+H++ Sbjct: 742 QRVKAGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAIVLSERLVRDDVLTSVHVD 801 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ G++ VGA + PGDIL+GKI+PKGES Sbjct: 802 EYSLDVRETKRGVEEFTSDIPNVSEEATKDLDDNGVVRVGARIEPGDILIGKISPKGESD 861 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R K S ++ + Sbjct: 862 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--IKTRESKKQDKVILA 919 Query: 966 LLARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +L+E+ G +G + K + ++ + Sbjct: 920 KIDEEYEAKNEDLKDILVDKLLELTEDKVSQGVKDYTGAEIINKGSKFTAATLKNLEYDG 979 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 D ++ L + Y +L+ K + I GD++P G+L++ KV+VA Sbjct: 980 IQSSDWTDDAHTNDLIQKLIMNYIRKYKLLDAELKRRKFAITIGDELPSGILQMAKVYVA 1039 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR I GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNPLGVPSRMN+GQIFE Sbjct: 1040 KKRKIGVGDKLAGRHGNKGIVSKVVRMEDMPFLEDGRPVDLVLNPLGVPSRMNLGQIFEA 1099 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+S Sbjct: 1100 ILGAAGKNLGVKFATPIFDGAQLEDLSEWTDKAGLPHLC--------------------- 1138 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 ST ++DG TGE FD+P TVG Y LKL Sbjct: 1139 -------STYLYDGE--------------------------TGEKFDQPATVGVTYFLKL 1165 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA+++LQE+LTIKS Sbjct: 1166 GHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHILQEILTIKS 1225 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 DDVVGR++ YE+IV G G PES NVL+ E++ LGLSI ++ Sbjct: 1226 DDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSIKMD 1270 >gi|254494926|ref|ZP_01052582.2| DNA-directed RNA polymerase beta chain [Polaribacter sp. MED152] gi|213690508|gb|EAQ42010.2| DNA-directed RNA polymerase beta chain [Polaribacter sp. MED152] Length = 1253 Score = 1302 bits (3370), Expect = 0.0, Method: Composition-based stats. Identities = 587/1353 (43%), Positives = 807/1353 (59%), Gaps = 115/1353 (8%) Query: 25 DIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPP 84 + PD +++Q S+ F + +ER EGL F FPIT +LEF+ Y DPP Sbjct: 4 EYPDFLDIQVKSFQDFFQLQTKAEERGEEGLYKTFMDNFPITDTRNQFVLEFLDYFVDPP 63 Query: 85 KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTF 144 ++ + +C+ R LT++VPLK L+L D + + Q +Y+G +P MT GTF Sbjct: 64 RYSIQECIERGLTHSVPLKARLKLYCTDPEHEDFETIV-----QDVYLGTIPYMTNSGTF 118 Query: 145 VIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHV 204 VI G +R+VVSQLHRSPG+ F +G LY+ R+IP +G W++ D +++ Sbjct: 119 VINGAERVVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKGSWIEFATDINQVMYA 175 Query: 205 RIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 IDR++K+PVT+ A+G + + +IL F L Sbjct: 176 YIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKAGLKKVL-------------- 221 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 G+KL + +LK+ E V ++V+ E EI + Sbjct: 222 -------------GRKLAARVLKTWHEDFVDEDT------------GEVVSIERNEIIFD 256 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMR 382 V++++ ++EI + + I + VD + + A I NTL D K+A+ IYR +R Sbjct: 257 RDTVLEKEHIDEIIEAGAKTILLHKVDNHMADYAIIHNTLQKDPTNSEKEAVEHIYRQLR 316 Query: 383 PGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKI 442 + A + + LFF +Y+L VGR +MN +L L+ P D + + K DII IIK Sbjct: 317 NAEPPDEETARGIIDKLFFSEQRYNLGEVGRFRMNTKLQLNEPIDQKVLTKLDIITIIKY 376 Query: 443 LVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQD 502 L++L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I+ER++ D + P D Sbjct: 377 LIELINSKAEVDDIDHLSNRRVRTVGEQLAGQFGVGLARMARTIRERMNVRDNEVFTPID 436 Query: 503 LINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVH 562 LINAK + S + FF ++QLSQ + N L+ ITH RRLSALG GG++R RAG E+RDVH Sbjct: 437 LINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGLSRERAGFEVRDVH 496 Query: 563 PTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT-NDVVYLSAME 621 THYGR+CP ET EG NIGL+SSL+ FA+VN GFIETPYRKV +G V + +YLSA E Sbjct: 497 YTHYGRLCPIETPEGPNIGLISSLSVFAKVNNLGFIETPYRKVNNGIVEGEEPIYLSAEE 556 Query: 622 EENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPF 681 EE + IAQ+N L EDGS + V R G+ +V E ID++D +P Q+ SI+ASLIPF Sbjct: 557 EEGKKIAQSNLELKEDGSIVLDRVIAREEGDFPVVNPEVIDYMDVAPNQIASISASLIPF 616 Query: 682 LENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAI 741 LE+DD+NR LMG NM RQAVPLL+ E+P VGTG+E VAK S I A+ G V VDA Sbjct: 617 LEHDDANRALMGSNMMRQAVPLLRPESPIVGTGLERRVAKDSRILINAEGEGEVTYVDAN 676 Query: 742 RIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGP 798 +I IR E L S Y L+KF+++NQ T +N +P+V+ GD V+ ++ +G Sbjct: 677 KITIRYDKTDEERLVSFDSDEVSYDLIKFRKTNQGTSINLKPIVETGDRVQEGQVLCEGY 736 Query: 799 STDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGP 858 +T G+LALGRNM VAFMPW GYNFED+++ISE++V ED+FTSIHI+E+ + RDTKLG Sbjct: 737 ATQKGELALGRNMKVAFMPWKGYNFEDAIVISEKVVREDIFTSIHIDEYSLDVRDTKLGT 796 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 EE+T DIPNVSEE K++DE G+I +GAEVNPGDIL+GKITPKGES TPEEKLLRAIFG Sbjct: 797 EELTNDIPNVSEEATKDLDENGMIRIGAEVNPGDILIGKITPKGESDPTPEEKLLRAIFG 856 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVIL 978 +KA DV+D SL+ + G V+D ++F R DKN+R ++E + L + + L Sbjct: 857 DKAGDVKDASLKASPSLRGVVIDKKLFRRAVKDKNKRIR--DKEAVATLEQSFVSKFEGL 914 Query: 979 DRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS-QWWQFAVQDEKVQ 1032 + +L ++ G+ + G + K + +++ D + Sbjct: 915 KDELIEKLFTLISGKTSQGVFNDLGEEVLPKGKKYTLKMLNSVDDYVHLTGSWTTDSDLN 974 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 V L Y+ + L+ + + I GD++P G+L++ KV++A KR ++ GDKMAG Sbjct: 975 ALVGELVHNYKIKVNDLQGSLRRQKFTISVGDELPAGILKLAKVYIAKKRKLKVGDKMAG 1034 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ET LGWA LG K Sbjct: 1035 RHGNKGIVARIVRAEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGEKLGTKY 1094 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + I D + I+ + ++GVP Sbjct: 1095 ATPIFDGASLDQINEITD------------------------------EAGVP------- 1117 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G + LYDG TG+ FD+P TVG IYM+KL HM+ DK++ARS Sbjct: 1118 -----------------RFGHTYLYDGGTGKRFDQPATVGIIYMIKLGHMIEDKMHARSI 1160 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ +L+E+LT+KSDDV+GR + YESI Sbjct: 1161 GPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSILREILTVKSDDVMGRAKTYESI 1220 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 V G E G PESFNVL+ E++ LGL + LE Sbjct: 1221 VKGEAMPEPGLPESFNVLMHELKGLGLDVRLEE 1253 >gi|167753041|ref|ZP_02425168.1| hypothetical protein ALIPUT_01307 [Alistipes putredinis DSM 17216] gi|167659355|gb|EDS03485.1| hypothetical protein ALIPUT_01307 [Alistipes putredinis DSM 17216] Length = 1287 Score = 1302 bits (3370), Expect = 0.0, Method: Composition-based stats. Identities = 569/1386 (41%), Positives = 812/1386 (58%), Gaps = 130/1386 (9%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 + R F + PDL+EVQ S+ F M+ + R NEGL F+ FPIT Sbjct: 3 TTKTQQRVSFSTVKNRVPYPDLLEVQLKSFRDFFQMDTTAENRKNEGLYKVFQENFPITD 62 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 +LEF+ Y DPP++ +++CL R LTY+VPLK L+L D + + Sbjct: 63 TRNNFVLEFIDYYIDPPRYSIEECLERGLTYSVPLKAKLKLYCTDDEHEDFGVVV----- 117 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +Y G +P MT+ GTFVI G +R++VSQLHRSPG+ F +G LY+ RIIP Sbjct: 118 QDVYFGTIPYMTERGTFVINGAERVIVSQLHRSPGVFFGQSM---HTNGTKLYSARIIPF 174 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWC 246 +G W++ D ++++ IDR++K+PVT+ L A+G ++++ IL F Sbjct: 175 KGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFEADQQILEIF-------------- 220 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 DL KV+ + + G +KL + +L + E V Sbjct: 221 ------DLADEVKVTKAALKKAVG-------RKLAARVLSTWVEDFVDEDT--------- 258 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNTLVTD 365 ++V+ E + ++ V+ E+ +++I S + I + + + + I NTL D Sbjct: 259 ---GEVVSIERNNVIVDRETVLQEEHIDQIIESGAKTILLHKENLSGIDFSIIYNTLQKD 315 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 K+A++ IYR +R + + A + LFF +YDL VGR ++N +L+LD Sbjct: 316 PCNSEKEAVVYIYRQLRASEPPDEATARDVIEKLFFSDKRYDLGDVGRYRINKKLDLDID 375 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +R + +EDIIAIIK L+ L N K +DDID+L NRRVR+VGE L NQ+ +G +RM R+ Sbjct: 376 PAIRTLTREDIIAIIKYLIQLINSKAEVDDIDHLSNRRVRTVGEQLSNQFSVGFVRMART 435 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 I+ER++ D + P DLINAK + S + FF +SQLSQ + +N L+ ITH RRLSALG Sbjct: 436 IRERMNVRDNEVFTPVDLINAKTLSSVINSFFGTSQLSQFMDQINPLAEITHKRRLSALG 495 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG++R RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A+++ GFIETPYR V Sbjct: 496 PGGLSRDRAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYAKISDMGFIETPYRTV 555 Query: 606 CDGKV---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTE-ELVFCRCAGEEILVPREKI 661 +G+V D+ Y SA EEE + +AQ+N +D++G F + + + R + +V +++ Sbjct: 556 TNGQVDLNNADIKYYSAEEEEGQVVAQSNVPIDDEGHFLQPDRIKAREGADFPVVTAQEV 615 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D +P Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPL+ E+P VGTG+E + Sbjct: 616 TLMDVAPNQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLVTCESPIVGTGIEKDMIS 675 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 S I+A+ G V DA +I I+ E + + Y L +++R+NQNT + Sbjct: 676 DSRIQIIAEGDGEVVFADATKIQIKYQRTEEEVICSFEPEITTYELPRYRRTNQNTSITL 735 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 +P V GD+V + I+ +G ST G+LALGRN+ VAFMPW GYNFED+++ISER+ ED+ Sbjct: 736 KPAVLTGDKVTKGQILTEGYSTQKGELALGRNLKVAFMPWKGYNFEDAIVISERIQREDI 795 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTS+H++E+ + RDTK G EE+T DIPNVSE+ K++D GII +GA V+PGDIL+GKI Sbjct: 796 FTSVHVDEYIMEVRDTKRGVEELTSDIPNVSEDATKDLDANGIIRIGANVHPGDILIGKI 855 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPKGES +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++++R G + S Sbjct: 856 TPKGESDPSPEEKLLRAIFGDKAGDVKDASLKAQPSLHGVVIDTKLYSRAGKENKRAGKS 915 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLI 1013 E+ QIE L + L + + ++L +L G+ G + + T + L+ Sbjct: 916 SEKLQIEKLDEKFAAQVADLTKQLVNKLYTLLQGKTTTGITDYFGVELYPAGTKFTQKLL 975 Query: 1014 SEYPRSQWWQ--------------FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEK 1059 E R + D + VE Y + K + Sbjct: 976 DELSRKVTDEKSGVAMGYLNLGTCKWTGDSHLDALVEKTINNYTIEWKKADAAIKREKYN 1035 Query: 1060 IQWGDDMPP-GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPV 1118 + GD++P GV+++ KV++A KR ++ GDKMAGRHGNKGIV+R++ EDMPFL+DGT V Sbjct: 1036 LTNGDELPQTGVIQMAKVYIAKKRKLKVGDKMAGRHGNKGIVARVVRDEDMPFLEDGTIV 1095 Query: 1119 DIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT 1178 DI LNPLGVPSRMN+GQI+ET LGWA LG K + I D + I+ + Sbjct: 1096 DICLNPLGVPSRMNLGQIYETVLGWAGKELGLKFATPIFDGASLDQINEYTA-------- 1147 Query: 1179 GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYD 1238 K+G+P SG++ LYD Sbjct: 1148 ----------------------KAGIP------------------------RSGRTYLYD 1161 Query: 1239 GLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEME 1298 G TGE FD+P TVG IYMLKL HM+ DK++ARS G YSL+TQQPLGGK+ GGQR GEME Sbjct: 1162 GGTGEKFDQPATVGVIYMLKLGHMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEME 1221 Query: 1299 VWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALG 1358 VW ++ +GAA +LQE+LTIKSDDV+GR + YE+IV G++ + G PE+ NVL+ E++ L Sbjct: 1222 VWALEGFGAANILQEILTIKSDDVMGRAKAYEAIVKGDNLPKPGIPEAMNVLLHELRGLA 1281 Query: 1359 LSIDLE 1364 LS+ LE Sbjct: 1282 LSVKLE 1287 >gi|304384449|ref|ZP_07366853.1| DNA-directed RNA polymerase subunit beta [Prevotella marshii DSM 16973] gi|304334469|gb|EFM00758.1| DNA-directed RNA polymerase subunit beta [Prevotella marshii DSM 16973] Length = 1270 Score = 1302 bits (3369), Expect = 0.0, Method: Composition-based stats. Identities = 568/1365 (41%), Positives = 797/1365 (58%), Gaps = 117/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F I PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 9 RVNFASVKNPIPYPDFLDVQLKSFKDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 68 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ + +CL R LTY+VPLK ++L D D I Q +++G Sbjct: 69 LEFLDYYIDPPRYSITECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 123 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTF+I G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 124 TIPYMTDNGTFIINGAERVVVSQLHRSPGVFFGQG---VHANGTVLYSARIIPFKGSWIE 180 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +S+ EIL F Sbjct: 181 FATDINNVMYAYIDRKKKLPVTTLLRAIGFESDKEILKIFDLAEEVKVNKKNMK------ 234 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+KL + ++K E V ++ Sbjct: 235 ---------------------AAVGRKLAARIMKRWNEDFVDEDT------------GEV 261 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ IE I +++ +I +S I + + N I NTL D + K Sbjct: 262 VSIERNEVLIERETEITTENVGDILNSGSSTILLHKDAEGANKYTIIFNTLAKDPSNSEK 321 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+L IYR +R D + + A + LFF +YDL VGR ++N +L LDT R + Sbjct: 322 EAVLYIYRQLRNADPADDASAREIIQNLFFSDKRYDLGEVGRYRINKKLGLDTDIATRVL 381 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KEDII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 382 TKEDIIEIIKYLIQLVNSNATVDDIDHLSNRRVRTVGEQLGNQFSIGLARMSRTIRERMN 441 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 442 VRDNEVFTPTDLINAKTLSSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 501 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A +N GFIETPYRKV DG Sbjct: 502 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYATINELGFIETPYRKVDDGVTN 561 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 N +VYL+A EEE+ I Q N+ L++DG+F E+V CR + +V +++D +D SP Sbjct: 562 LDNNSIVYLTAEEEEDHIIGQGNAPLNDDGTFIREVVKCRQDADFPVVAPKQVDLMDVSP 621 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++ASLIPFLE+DD +R LMGCNM RQAVPLL +AP VGTGME V ++S I Sbjct: 622 QQIASVSASLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGMEKQVCENSRTMIT 681 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++ VDA I I R+ E + + YR+ KF+R+NQN ++ RP+ G Sbjct: 682 AEGDGVISYVDATTIRILYDRTEEEEFVSFEPALKEYRVPKFRRTNQNMTIDLRPICVKG 741 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V+ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED++++SER+V +DV TS+H++ Sbjct: 742 QRVKAGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAIVLSERLVRDDVLTSVHVD 801 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++DE GII +GA V PGDIL+GKI+PKGES Sbjct: 802 EYSLDVRETKRGVEEFTSDIPNVSEEATKDLDENGIIRIGARVEPGDILIGKISPKGESD 861 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ ++G V+D ++F+R ++ S ++ + Sbjct: 862 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLTGVVIDKKLFSRAIKTRD--SKKQDKVILA 919 Query: 966 LLARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +L+ + G +G + K + ++ + Sbjct: 920 KIDEEYEAKNADLKDILVEKLITLAKRFSSQGVKDYTGAEIITKGSKFTATALKNLEYDG 979 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 D ++ L + Y +L+ K + I GD++P G+L++ KV+VA Sbjct: 980 IQSGKWTSDAHTNEMIQKLIMNYIRKYKLLDAELKRRKFAITIGDELPSGILQMAKVYVA 1039 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR I GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNPLGVPSRMN+GQIFE Sbjct: 1040 KKRKIGVGDKLAGRHGNKGIVSKVVRMEDMPFLEDGRPVDLVLNPLGVPSRMNLGQIFEA 1099 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A L K + I D D+S Sbjct: 1100 ILGAAGRKLNVKFATPIFDGAKLEDLSEWTEKAGLPHLC--------------------- 1138 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 ST ++DG TGE FD+P TVG Y LKL Sbjct: 1139 -------STHLYDGE--------------------------TGEQFDQPATVGVTYFLKL 1165 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 HMV DK+++RS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA++VLQE+LTIKS Sbjct: 1166 GHMVEDKMHSRSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHVLQEILTIKS 1225 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 DDVVGR++ YE+IV G G PES NVL+ E++ LGLS+ L+ Sbjct: 1226 DDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSVKLD 1270 >gi|261880895|ref|ZP_06007322.1| DNA-directed RNA polymerase subunit beta [Prevotella bergensis DSM 17361] gi|270332403|gb|EFA43189.1| DNA-directed RNA polymerase subunit beta [Prevotella bergensis DSM 17361] Length = 1269 Score = 1301 bits (3368), Expect = 0.0, Method: Composition-based stats. Identities = 569/1367 (41%), Positives = 802/1367 (58%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F K PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 8 RVNFAKVQNPFPYPDFLDVQLKSFKDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ + +CL R LTY+VPLK ++L D D I Q +++G Sbjct: 68 LEFLDYFIDPPRYSISECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTF+I G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 123 TIPYMTDNGTFIINGAERVVVSQLHRSPGVFFGQG---VHANGTVLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +S+ +IL F Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTLLRAIGYESDKDILQIFDLAEEVKVNK---------- 229 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 +Q++ G+KL + +L+S E V ++ Sbjct: 230 ---------------RNRKQLL--GRKLAARVLRSWNEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V E E+ +E I + + ++I S + I ++ + A I TL D + K Sbjct: 261 VTVERNEVILERETEITKDNYDDILESGASTVLIHKDAEAASKYAIIFETLKKDTSNSEK 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R + + A +F LFF +YDL VGR ++N +L D D R + Sbjct: 321 EAVNYIYRQLRNAEPVDEASAREVFQNLFFSDKRYDLGEVGRYRINKKLGEDISMDTRVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KEDII II+ ++ L + +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 381 TKEDIIEIIRYMIKLIHSNAVVDDIDHLSNRRVRTVGEQLSNQFSIGLARMSRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 441 VRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A +N GFIETPYRKV D KV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYATINELGFIETPYRKVTDKKVD 560 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 +DV YL+A EEE +AQ N+ L+ DG+F + V CR A + +V + + +D SP Sbjct: 561 LDNHDVEYLTAEEEEGLMVAQGNAPLNPDGTFIRDFVHCRYAADFPVVDPDDVTLMDVSP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A+LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S I Sbjct: 621 QQIASVSAALIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMIT 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ + + + Y + KF+R+NQN ++ RP+ G Sbjct: 681 AEGEGVIEYVDATTIRILYDRTEDEEFVSFEPAIKEYCIPKFRRTNQNMIIDLRPICVKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V++ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED+++ISERMV EDV TS+H++ Sbjct: 741 QRVKKGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAVVISERMVREDVLTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G E T DIPNVSEE K++DE G+I VGA V PGDI++GKI+PKGES Sbjct: 801 EYSLDVRETKRGVEVFTNDIPNVSEEATKDLDENGVIRVGARVEPGDIMIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R +K S ++ ++ Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--EKTRESRKQDKILLQ 918 Query: 966 LLARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +LM + G +G + K + S ++ Sbjct: 919 KIDGEYEAKCDDLKNMLVDKLMTLTENKTSQGVKDFTGAEIITKGSKFSVAVLKNMEYDG 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE + ++ L + Y L + I GD++P GV+++ KV+VA Sbjct: 979 IQSNDWTDDEHINGMIQKLIMNYIRKAKQLMAEQNRRKFAISIGDELPSGVIKMAKVYVA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+I+ EDMPFL+DG PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1039 KKRKIQVGDKLAGRHGNKGIVSKIVRAEDMPFLEDGRPVDLVLNPMGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LGKK + I D D+ Sbjct: 1099 ILGAAGRKLGKKFATPIFDGAKLDDLREWTE----------------------------- 1129 Query: 1200 WKSGVPV--STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST V+DG TGEPFD+ TVG Y L Sbjct: 1130 -KAGLPNLCSTTVYDGE--------------------------TGEPFDQKATVGITYFL 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++ +GA++VLQEMLTI Sbjct: 1163 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEGFGASHVLQEMLTI 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G+ G PES NVL+ E++ LGLS+ ++ Sbjct: 1223 KSDDVVGRSKAYEAIVKGDPMPNPGIPESLNVLLHELRGLGLSVKMD 1269 >gi|281425125|ref|ZP_06256038.1| DNA-directed RNA polymerase, beta subunit [Prevotella oris F0302] gi|281400717|gb|EFB31548.1| DNA-directed RNA polymerase, beta subunit [Prevotella oris F0302] Length = 1269 Score = 1301 bits (3367), Expect = 0.0, Method: Composition-based stats. Identities = 576/1367 (42%), Positives = 805/1367 (58%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 8 RVNFASVHNPLPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 68 LEFLDYYIDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 123 TIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQG---IHANGTVLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G + + +IL F Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTLLRAMGYEQDKDILQIFDLAEELKVNKKNMK------ 233 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+KL + +LKS E V ++ Sbjct: 234 ---------------------AAIGRKLAARVLKSWNEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E + E +++EI S I + ++ N I NTL D + K Sbjct: 261 VSIERNEVIMERETELTEDNIDEILESGASTILLHKDAEAANKYTIIFNTLSKDPSNSEK 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +L LDT D R + Sbjct: 321 EAVNYIYRQLRNADPADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLGLDTDMDTRVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+D+I IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 381 TKDDVIEIIKYLIQLVNSNATVDDIDHLSNRRVRTVGEQLANQFAIGLARMSRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 441 VRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYRKV + KV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCIYAKINDLGFIVTPYRKVNNAKVD 560 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 DVVYL+A EEE++ I Q N+ L DG+F + V CR + +V ++D +D SP Sbjct: 561 MDNKDVVYLTAEEEEDKIIGQGNAPLSVDGAFQRDTVKCRQDADYPVVTPNQVDLVDVSP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++ASLIPFLE+DD +R LMGCNM RQAVPL+ +AP VGTG+E V + S I Sbjct: 621 QQIASVSASLIPFLEHDDGHRALMGCNMMRQAVPLIHNDAPIVGTGLEKQVCEDSRTMIT 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ E + + YR+ KF+R+NQN ++ RP+ G Sbjct: 681 AEGDGVIEYVDATTIRILYDRTEEDEFVSFEPALKEYRIPKFRRTNQNMTIDLRPICDKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V+ DI+ +G +T+ G+LALGRN+LVA++PW GYN+ED+++ISERMV EDV TS+H++ Sbjct: 741 QRVKAGDILTEGYATENGELALGRNLLVAYIPWKGYNYEDAVVISERMVREDVLTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ G+I VGA V PGDIL+GKI+PKGES Sbjct: 801 EYSLDVRETKRGVEEFTSDIPNVSEEATKDLDDNGVIRVGARVEPGDILIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R ++ S ++ + Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRAVKTRD--SKKQDKILLA 918 Query: 966 LLARDKDDEQVILDRNIYSRLM-----EILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +LM +I G +G + K + + + Sbjct: 919 KIDEEYEAKNNDLKDILVDKLMTLTEGKISQGVKDYTGAEIITKGSKFTVPTLKNLEFDG 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 D+ ++ L + Y +L+ K K I GD++P G+L++ KV+VA Sbjct: 979 IQSNNWTDDDHTNALIQKLIMNYIRKYKLLDAEMKRKKFAISIGDELPSGILQMAKVYVA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1039 KKRKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLEDGRPVDLVLNPMGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ Sbjct: 1099 ILGAAGQKLGCKFATPIFDGAKLEDLKEWTD----------------------------- 1129 Query: 1200 WKSGVPV--STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1130 -KAGLPNLCSTYIYDGE--------------------------TGEKFDQPATVGITYFL 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTI Sbjct: 1163 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTI 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDD VGR++ YE+IV G+ G PES NVL+ E++ LGLSI L+ Sbjct: 1223 KSDDTVGRSKAYEAIVKGDPMPTPGIPESLNVLLHELRGLGLSIKLD 1269 >gi|258647508|ref|ZP_05734977.1| DNA-directed RNA polymerase, beta subunit [Prevotella tannerae ATCC 51259] gi|260852281|gb|EEX72150.1| DNA-directed RNA polymerase, beta subunit [Prevotella tannerae ATCC 51259] Length = 1252 Score = 1301 bits (3367), Expect = 0.0, Method: Composition-based stats. Identities = 572/1355 (42%), Positives = 799/1355 (58%), Gaps = 117/1355 (8%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 + PD ++VQ S+ FL ++ ++R N+GL F FPI +LEF+ Y D Sbjct: 1 MPYPDFLDVQLKSFKDFLQLDTPAEQRKNDGLYKVFAENFPIADTRNNFVLEFLDYYIDA 60 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 P++ V++CL R LTY+VPLK L+L D D + Q +++G +P MT++GT Sbjct: 61 PRYSVEECLERGLTYSVPLKAKLKLYCTDPDHEDFDTVV-----QDVFLGPIPYMTENGT 115 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 FVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W++ D ++++ Sbjct: 116 FVINGAERVVVSQLHRSPGVFFGSS---IHANGTQLYSARIIPFKGSWIEFATDINNVMY 172 Query: 204 VRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSS 262 IDR++K+PVT+ L A+G + + +IL F + Sbjct: 173 AYIDRKKKLPVTTLLRAIGFEKDKDILQIFGLSEEVKVTKANLKKYI------------- 219 Query: 263 SLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYI 322 G+KL + +LK+ E V ++V+ E E+ + Sbjct: 220 --------------GRKLAARVLKTWVEDFVDEET------------GEVVSIERTEVIL 253 Query: 323 EAGDVIDEKSLEEIFHSEIRDIPI-LYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 E I ++EEI +S + I + L + + I NT D K+A+ IYR++ Sbjct: 254 ERETEITADNVEEILNSGSKTIEVHLDSSIGIDYSIIFNTFQKDPCNSEKEAVNYIYRLL 313 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 R D + + A + N LFF +YDL VGR +MN +L L T D R + +EDII IIK Sbjct: 314 RNADPADDASAREVINNLFFSEKRYDLGEVGRYRMNRKLGLSTDGDTRVLTREDIIEIIK 373 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 L++L N K ++DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ D + P Sbjct: 374 YLIELINSKASVDDIDHLSNRRVRTVGEQLANQFSVGLARMTRTIRERMNVRDNEVFTPT 433 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDV 561 DLINAK + S + FF ++ LSQ + N LS +TH RRLSALG GG++R RAG E+RDV Sbjct: 434 DLINAKTISSVINSFFGTNALSQFMDQTNPLSEVTHKRRLSALGPGGLSRERAGFEVRDV 493 Query: 562 HPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV---TNDVVYLS 618 H THYGR+CP E+ EG NIGL+SSL +A++++ GFIETPYRKV + KV DVVYLS Sbjct: 494 HYTHYGRLCPIESPEGPNIGLISSLCVYAKIDSLGFIETPYRKVENSKVDLENKDVVYLS 553 Query: 619 AMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASL 678 A EEE++ I Q N+ L+ DG+F V CR + +V E+++ +D +P+Q+ SIAA L Sbjct: 554 AEEEEDKIIGQGNAPLNSDGTFILSKVKCRQDADYPVVSPEQVELMDVAPQQIASIAAGL 613 Query: 679 IPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQV 738 IPFLE+DD++R LMG NM RQAVPL+++EAP VGTG+E V S I A+ G+V+ V Sbjct: 614 IPFLEHDDAHRALMGSNMMRQAVPLIRSEAPIVGTGIERQVCVDSRTMISAEGDGVVDFV 673 Query: 739 DAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIA 795 DA I + R+ + + + YR+ KF+R+NQN + RP+ + G V++ DI+ Sbjct: 674 DATTIRVLYDRTEDEEFVSFEPALKEYRIPKFRRTNQNMVFDLRPICEKGQRVKKGDILT 733 Query: 796 DGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTK 855 +G +T+ G+LALGRN+LVA+MPW GYN+ED+++++ER+V +D+ TS+H++EF + R+TK Sbjct: 734 EGYATESGELALGRNLLVAYMPWKGYNYEDAIVLNERLVRDDILTSVHVDEFSLDVRETK 793 Query: 856 LGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRA 915 G EE+T DIPNVSEE K++DE GII +GA V PGDIL+GKITPKGES TPEEKLLRA Sbjct: 794 RGVEELTNDIPNVSEEATKDLDENGIIRIGARVVPGDILIGKITPKGESDPTPEEKLLRA 853 Query: 916 IFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQ 975 IFG+KA DV+D SL+ +SG V+D R++++ K+ S + ++ + L D E Sbjct: 854 IFGDKAGDVKDASLKANPSLSGVVIDRRLYSKA--QKSRSSKAADKSTLLELDEQFDKET 911 Query: 976 VILDRNIYSRL-----MEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW-WQFAVQDE 1029 L + +L + G G + K T S L+ + DE Sbjct: 912 SALKSAMIDKLLVLTKGKTSLGVKDTIGTEIIAKGTKFSKSLLDSLSYTSLQLNDWTNDE 971 Query: 1030 KVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDK 1089 + +L + Y + ++ K + I GD++P G+++ KV++A KR I GDK Sbjct: 972 HTNLLIRTLVLNYLKKYNKMDAVLKRRKFAITIGDELPSGIIQQAKVYIAKKRKIGVGDK 1031 Query: 1090 MAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLG 1149 MAGRHGNKGIVS+I+ EDMPFL DG PVDIVLNPLGVPSRMN+GQIFE LG A LG Sbjct: 1032 MAGRHGNKGIVSKIVRQEDMPFLADGRPVDIVLNPLGVPSRMNLGQIFEAILGAAGKRLG 1091 Query: 1150 KKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTP 1209 K + I D ++ K+G+P Sbjct: 1092 VKFATPIFDGAKLDELCEWTD------------------------------KAGLP---- 1117 Query: 1210 VFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYA 1269 L+DG TGEPFD+ TVG YMLKL HMV DK++A Sbjct: 1118 --------------------RYCAEQLFDGGTGEPFDQKATVGVTYMLKLGHMVEDKMHA 1157 Query: 1270 RSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVY 1329 RS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTIKSDDV GR + Y Sbjct: 1158 RSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTIKSDDVTGRAKAY 1217 Query: 1330 ESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 E++V G G PES NVL+ E++ LGLSI L+ Sbjct: 1218 EAVVKGETMPTPGIPESLNVLLHELRGLGLSITLD 1252 >gi|317503999|ref|ZP_07962006.1| DNA-directed RNA polymerase subunit beta [Prevotella salivae DSM 15606] gi|315664859|gb|EFV04519.1| DNA-directed RNA polymerase subunit beta [Prevotella salivae DSM 15606] Length = 1269 Score = 1301 bits (3366), Expect = 0.0, Method: Composition-based stats. Identities = 576/1367 (42%), Positives = 804/1367 (58%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 8 RVNFASVHNPLPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 68 LEFLDYYIDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 123 TIPYMTANGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGTVLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G + + +IL F Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTLLRAMGFEQDKDILQIFDLAEEIKVNKKNMK------ 233 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+KL + +LKS E V ++ Sbjct: 234 ---------------------AAVGRKLAARVLKSWNEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E + E ++ EI S I + ++ N I NTL D + K Sbjct: 261 VSIERNEVIMERETELTEDNIGEILDSGASTILLHKDAEAANKYTIIFNTLSKDPSNSEK 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +L LD DVR + Sbjct: 321 EAVNYIYRQLRNADPADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLGLDIDMDVRVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KED+IAIIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 381 TKEDVIAIIKYLIQLVNSNVTVDDIDHLSNRRVRTVGEQLANQFAIGLARMSRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 441 VRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYR V D KV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCIYAKINDLGFIVTPYRTVHDHKVD 560 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 DVVYL+A EEE + I Q N+ L DG F +E V CR + +V +++D +D SP Sbjct: 561 MDNKDVVYLTAEEEEEKIIGQGNAPLSTDGKFLKETVKCRQDADYPVVTPDEVDLVDVSP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++ASLIPFLE+DD +R LMGCNM RQAVPL+ +AP VGTG+E V + S + Sbjct: 621 QQIASVSASLIPFLEHDDGHRALMGCNMMRQAVPLIHNDAPIVGTGLEKQVCEDSRTMVT 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ E + + YR+ KF+R+NQN ++ RP+ G Sbjct: 681 AEGDGVIEYVDATTIRILYDRTEEEEFVSFEPALKEYRIPKFRRTNQNMTIDLRPICNKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V+ DI+ +G +T+ G+LALGRN+LVA++PW GYN+ED+++ISERMV EDV TS+H++ Sbjct: 741 QRVKAGDILTEGYATENGELALGRNLLVAYIPWKGYNYEDAVVISERMVREDVLTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ G+I VGA V PGDIL+GKI+PKGES Sbjct: 801 EYSLDVRETKRGVEEFTSDIPNVSEEATKDLDDNGVIRVGARVEPGDILIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R ++ S ++ + Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRAIKTRD--SKKQDKVLLA 918 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQ-----NAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +LM + G+ +G + K + + + Sbjct: 919 KIDEEYEAKNNDLKDILVDKLMTLTEGKTSQGVKDYTGAEIITKGSKFTVPALKNLEFDG 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 D+ ++ L + Y +L+ K K I GD++P G+L++ KV++A Sbjct: 979 IQSNNWTDDDHTNALIQKLIMNYIRKYKLLDAEMKRKKFAISIGDELPSGILQMAKVYIA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1039 KKRKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLEDGRPVDLVLNPMGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ Sbjct: 1099 ILGAAGQKLGCKFATPIFDGAKLDDLKEWTD----------------------------- 1129 Query: 1200 WKSGVPV--STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1130 -KAGLPNLCSTYIYDGE--------------------------TGEKFDQPATVGVTYFL 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTI Sbjct: 1163 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTI 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDD VGR++ YE+IV G+ G PES NVL+ E++ LGLSI L+ Sbjct: 1223 KSDDTVGRSKAYEAIVKGDTMPTPGIPESLNVLLHELRGLGLSIKLD 1269 >gi|294674790|ref|YP_003575406.1| DNA-directed RNA polymerase subunit beta [Prevotella ruminicola 23] gi|294473818|gb|ADE83207.1| DNA-directed RNA polymerase, beta subunit [Prevotella ruminicola 23] Length = 1270 Score = 1300 bits (3365), Expect = 0.0, Method: Composition-based stats. Identities = 574/1367 (41%), Positives = 809/1367 (59%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R FG + PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 9 RVNFGSVKNPMPFPDFLDVQLKSFKDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 68 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK L+L D D I Q +++G Sbjct: 69 LEFLDYYIDPPRYSIDECLERGLTYSVPLKAKLKLYCTDPDHEDFGTVI-----QDVFLG 123 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G LLY+ R+IP +G W++ Sbjct: 124 PIPYMTANGTFVINGAERVVVSQLHRSPGVFFGQS---VHANGTLLYSARVIPFKGSWIE 180 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +++ +IL F + Sbjct: 181 FATDINNVMYAYIDRKKKLPVTTLLRAIGFEADKDILQIFNLAEEVKVNKKSLKAVI--- 237 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G KL + +LKS E V ++ Sbjct: 238 ------------------------GCKLAARVLKSWNEDFVDEDT------------GEV 261 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E ++ +E I E+++ +I S + I + ++ + I NTL D + K Sbjct: 262 VSIERNQMIMERETEITEENMMDILESGAQTILVHKDASVASDYSIIFNTLAKDPSNSEK 321 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+L IYR +R D + + A + LFF +YDL VGR ++N +L L+T DVR + Sbjct: 322 EAVLYIYRQLRNADPADDASAREVIQNLFFSDKRYDLGDVGRYRINKKLGLNTDMDVRVL 381 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KEDII IIK L+ L N K T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 382 TKEDIIEIIKYLIQLVNSKATVDDIDHLSNRRVRTVGEQLANQFSIGLARMSRTIRERMN 441 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 442 VRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 501 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD---G 608 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI+TPYRKV + Sbjct: 502 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYAKINELGFIQTPYRKVENGVAD 561 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 N +VYL+A EE I Q N+ L++DG+F +V CR + +VP +D +D SP Sbjct: 562 LSDNGIVYLTAEEEAEHIIGQGNAPLNDDGTFIRSVVKCRQDADFPVVPPTDVDLMDVSP 621 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ SIAASLIPFLE+DD++R LMG NM RQAVPLL EAP VGTG+E V + S + Sbjct: 622 QQIASIAASLIPFLEHDDAHRALMGSNMMRQAVPLLHNEAPIVGTGIEKQVCEDSRTMVT 681 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ + + + YR+ KF+R+NQN ++ RP+ + G Sbjct: 682 AEGDGVIEYVDATTIRILYDRTEDEEFVSFEPALKEYRIAKFRRTNQNMTIDLRPICEKG 741 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V+ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED+++++ER+V +DV TS+H++ Sbjct: 742 QRVKAGDILTEGYATEDGELALGRNLLVAYMPWKGYNYEDAIVLNERIVRDDVLTSVHVD 801 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ G+I VGA V PGDIL+GKI+PKGES Sbjct: 802 EYSLDVRETKRGVEEFTADIPNVSEEATKDLDDNGVIRVGARVEPGDILIGKISPKGESD 861 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG ++D ++F R K+ +S ++ + Sbjct: 862 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVIIDKKMFQRA--IKDRKSKQQDKIVLA 919 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQ-----NAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +LME+ G+ +G + K + ++ + Sbjct: 920 KIDEEYEAKVEDLKDILIDKLMELTKGKTSQGVKDYTGAEIITKGSKFTATALRNLEYGD 979 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE + L + + +L+ K K I GD++P G+L++ KV+VA Sbjct: 980 VQISNWTTDEHKNELIAKLIINFMKKYKLLDAEMKRKKFAITIGDELPNGILQMAKVYVA 1039 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR I GDK+AGRHGNKGIVS+I+ EDMPFL+DG PVD+VLNPLGVPSRMN+GQIFE Sbjct: 1040 KKRKIGVGDKLAGRHGNKGIVSKIVRQEDMPFLEDGRPVDLVLNPLGVPSRMNLGQIFEA 1099 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D++ Sbjct: 1100 ILGAAGKKLGVKFATPIFDGAKLEDLAEWTD----------------------------- 1130 Query: 1200 WKSGVP--VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1131 -KAGLPRLCSTHLYDGE--------------------------TGERFDQPATVGITYFL 1163 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA++VLQE+LTI Sbjct: 1164 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHVLQEILTI 1223 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDD VGR++ YE+IV G G PES NVL+ E++ LGLSI L+ Sbjct: 1224 KSDDTVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSITLD 1270 >gi|313207005|ref|YP_004046182.1| DNA-directed RNA polymerase subunit beta [Riemerella anatipestifer DSM 15868] gi|312446321|gb|ADQ82676.1| DNA-directed RNA polymerase subunit beta [Riemerella anatipestifer DSM 15868] gi|315024081|gb|EFT37083.1| DNA-directed RNA polymerase subunit beta [Riemerella anatipestifer RA-YM] gi|325335561|gb|ADZ11835.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Riemerella anatipestifer RA-GD] Length = 1275 Score = 1300 bits (3365), Expect = 0.0, Method: Composition-based stats. Identities = 583/1379 (42%), Positives = 815/1379 (59%), Gaps = 120/1379 (8%) Query: 3 KGVVFNGLG---RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 R F ++ PD +++Q S+ F ++ P++R NEGL F Sbjct: 1 MSKSKTTQKAQGNQRINFSSAKGRVETPDFLDIQIQSFKEFFQLDTLPEQRVNEGLYKTF 60 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 + FPIT +LEF+ Y D P++ +D+C+ R LTY+VPLK L+L D + Sbjct: 61 QENFPITDSRNQFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEYDDFQ 120 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 I Q +Y+G +P MT G+F+I G +R+VV+QLHRSPG+ F +G L Sbjct: 121 TVI-----QDVYLGTVPYMTPSGSFIINGAERVVVTQLHRSPGVFFGQT---YHANGTKL 172 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVY 238 Y RIIP +G WM+ D +++ IDR++K+P+T+ L A+G +S+ EIL F Sbjct: 173 YYSRIIPFKGSWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGYESDKEILQIF------ 226 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 DL KVS + + G + L + +L + E V Sbjct: 227 --------------DLAEEVKVSKAALKKVEG-------RTLAARVLNTWFEDFVDEDT- 264 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 ++V+ E EI ++ V++++ L+ I + ++ I +++ ++ + I Sbjct: 265 -----------GEVVSVERNEIILDRETVLEKEHLDLILEAGVKTI-LIHNENTKEFSII 312 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 +NTL D K+A+ IYR +R D A + LFF +Y L VGR ++N Sbjct: 313 QNTLQKDPTNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYSLGEVGRYRLNK 372 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +L L + V + KEDII+I+K L++L N K +DDID+L NRR+R+VGE L Q+ +G Sbjct: 373 KLGLSVDESVEVLTKEDIISIVKHLIELANSKAEVDDIDHLSNRRIRTVGEQLAGQFGVG 432 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L R+ R+I+ER++ D + P DL+NAK + S + FF ++QLSQ + N LS ITH Sbjct: 433 LSRIARTIRERMNVRDNELFSPTDLVNAKTLTSVINSFFGTNQLSQFMDQTNPLSEITHK 492 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVH THYGRICP ET EG NIGL+SSL +A++N GFI Sbjct: 493 RRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGIYAKINNLGFI 552 Query: 599 ETPYRKVCDGKVTND--VVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 ETPYRKV +GKV D +YL+A +EE + IAQAN L +DG F E + R G+ +V Sbjct: 553 ETPYRKVENGKVDLDAAPIYLNAEDEEAKIIAQANVELADDGKFETERIIARLDGDYPVV 612 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 E++D ID +P Q+ I+ASLIPFLE+DD+NR LMG NM RQAVPLLK +AP VGTG+E Sbjct: 613 EPEQVDLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLKPQAPIVGTGLE 672 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQN 773 VA+ S I A+ G+VE VDA RIVI+ + D+ S Y L KF+++NQ+ Sbjct: 673 KQVARDSRILINAEGTGVVEYVDAERIVIKYDRTEDEDIVSFESATKTYHLTKFRKTNQS 732 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 T + +P+V+VGD V + ++ DG +T+ G+LALGRN++VAFMPW GYNFED+++I+E++ Sbjct: 733 TTITLKPIVRVGDTVEKGQVLCDGYATENGELALGRNLVVAFMPWKGYNFEDAIVINEKV 792 Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDI 893 V ED FTSIH++E+ + RDTKLG EE+T DIPN+SE+ K++DE G+I +GAEV PGDI Sbjct: 793 VREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNISEDATKDLDENGMIRIGAEVKPGDI 852 Query: 894 LVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKN 953 L+GKITPKGES TPEEKLLRAIFG+KA DV+D SL+ S + G V+D ++F+R+ DK Sbjct: 853 LIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVIDKKLFSRNIKDKK 912 Query: 954 ERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVL 1008 +R+ + + + L + +L I+ G+ + G + K Sbjct: 913 KRTEEKIKLEEIENQ--YKAKFNELRTVLLDKLNTIVNGKTSQGVKNDLGEEIIGKGAKF 970 Query: 1009 SSDLISEYPRSQWW--QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDM 1066 S L+ D ++ L Y+ + L+ + I GD++ Sbjct: 971 SMKLLQSVEDYVNVSGSDWTVDADKNELIKQLIHNYKIKYNDLQGVKNREKYAISIGDEL 1030 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 P G++++ KV++A KR + GDKMAGRHGNKGIVSRI+ EDMPFL+DGTPVDIVLNPLG Sbjct: 1031 PSGIIKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPVDIVLNPLG 1090 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQI+ET LGWA LG K + I D I+ Sbjct: 1091 VPSRMNIGQIYETVLGWAGKQLGLKFATPIFDGAKLDQITEYTE---------------- 1134 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 K+G+P+ G + LYDG TGE F Sbjct: 1135 --------------KAGLPI------------------------YGNTYLYDGGTGERFT 1156 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 +P TVG IYMLKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+G Sbjct: 1157 QPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFG 1216 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 A+ +L+E+LT+KSDDV+GR + YE+I G E G PESFNVL+ E+Q LGL + LE Sbjct: 1217 ASNILREILTVKSDDVIGRAKTYEAIAKGEAMPEPGIPESFNVLLHELQGLGLDVRLEE 1275 >gi|299141110|ref|ZP_07034247.1| DNA-directed RNA polymerase, beta subunit [Prevotella oris C735] gi|298577070|gb|EFI48939.1| DNA-directed RNA polymerase, beta subunit [Prevotella oris C735] Length = 1269 Score = 1298 bits (3360), Expect = 0.0, Method: Composition-based stats. Identities = 575/1367 (42%), Positives = 805/1367 (58%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 8 RVNFASVHNPLPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 68 LEFLDYYIDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 123 TIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQG---IHANGTVLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G + + +IL F Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTLLRAMGYEQDKDILQIFDLAEELKVNKKNMK------ 233 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+KL + +LKS E V ++ Sbjct: 234 ---------------------AAIGRKLAARVLKSWNEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E + E +++EI S I + ++ N I NTL D + K Sbjct: 261 VSIERNEVIMERETELTEDNIDEILESGASTILLHKDAEAANKYTIIFNTLSKDPSNSEK 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF YDL VGR ++N +L LDT D R + Sbjct: 321 EAVNYIYRQLRNADPADDASAREVFQNLFFSDKCYDLGEVGRYRINKKLGLDTDMDTRVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+D+I IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 381 TKDDVIEIIKYLIQLVNSNATVDDIDHLSNRRVRTVGEQLANQFAIGLARMSRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +T+ RRLSALG GG++R Sbjct: 441 VRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTYKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYRKV + KV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCIYAKINDLGFIVTPYRKVNNAKVD 560 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 DVVYL+A EEE++ I Q N+ L DG+F + V CR + +V +++D +D SP Sbjct: 561 MDNKDVVYLTAEEEEDKIIGQGNAPLSVDGAFQRDTVKCRQDADYPVVTPDQVDLVDVSP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++ASLIPFLE+DD +R LMGCNM RQAVPL+ +AP VGTG+E V + S I Sbjct: 621 QQIASVSASLIPFLEHDDGHRALMGCNMMRQAVPLIHNDAPIVGTGLEKQVCEDSRTMIT 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ E + + YR+ KF+R+NQN ++ RP+ G Sbjct: 681 AEGDGVIEYVDATTIRILYDRTEEDEFVSFEPALKEYRIPKFRRTNQNMTIDLRPICDKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V+ DI+ +G +T+ G+LALGRN+LVA++PW GYN+ED+++ISERMV EDV TS+H++ Sbjct: 741 QRVKAGDILTEGYATENGELALGRNLLVAYIPWKGYNYEDAVVISERMVREDVLTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ G+I VGA V PGDIL+GKI+PKGES Sbjct: 801 EYSLDVRETKRGVEEFTSDIPNVSEEATKDLDDNGVIRVGARVEPGDILIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R ++ S ++ + Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRAVKTRD--SKKQDKILLA 918 Query: 966 LLARDKDDEQVILDRNIYSRLM-----EILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +LM +I G +G + K + + + Sbjct: 919 KIDEEYEAKNNDLKDILVDKLMTLTEGKISQGVKDYTGAEIITKGSKFTVPTLKNLEFDG 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 D+ ++ L + Y +L+ K K I GD++P G+L++ KV+VA Sbjct: 979 IQSNNWTDDDHTNALIQKLIMNYIRKYKLLDAEMKRKKFAISIGDELPSGILQMAKVYVA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1039 KKRKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLEDGRPVDLVLNPMGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ Sbjct: 1099 ILGAAGQKLGCKFATPIFDGAKLEDLKEWTD----------------------------- 1129 Query: 1200 WKSGVPV--STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1130 -KAGLPNLCSTYIYDGE--------------------------TGEKFDQPATVGITYFL 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTI Sbjct: 1163 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTI 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDD VGR++ YE+IV G+ G PES NVL+ E++ LGLSI L+ Sbjct: 1223 KSDDTVGRSKAYEAIVKGDPMPTPGIPESLNVLLHELRGLGLSIKLD 1269 >gi|282879907|ref|ZP_06288632.1| DNA-directed RNA polymerase, beta subunit [Prevotella timonensis CRIS 5C-B1] gi|281306209|gb|EFA98244.1| DNA-directed RNA polymerase, beta subunit [Prevotella timonensis CRIS 5C-B1] Length = 1270 Score = 1298 bits (3359), Expect = 0.0, Method: Composition-based stats. Identities = 567/1365 (41%), Positives = 801/1365 (58%), Gaps = 117/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + PD ++VQ S+ FL + P+ER N+GL F FPIT + Sbjct: 9 RINFASVHNPVPYPDFLDVQLKSFKDFLQLETPPEERKNDGLYKVFSENFPITDTRNNFV 68 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 69 LEFLDYFIDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 123 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W++ Sbjct: 124 TIPYMTDNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGTTLYSARIIPFKGSWIE 180 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +S+ +IL F + Sbjct: 181 FATDINNVMYAYIDRKKKLPVTTLLRAIGYESDKDILQIFDLAEEVKVNKKNMNASI--- 237 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G++L + +LKS E V ++ Sbjct: 238 ------------------------GRRLAARVLKSWNEDFVDEDT------------GEV 261 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E I E ++ +I S I + + N A I NTL D + K Sbjct: 262 VSIERNEVIMERETEITEDNVADIIDSGASTILLHRDSELANKFAIIFNTLSKDPSNSEK 321 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +FN LFF +YDL VGR ++N +L L+T D+R + Sbjct: 322 EAVNYIYRQLRNADPADDASAREVFNNLFFSDKRYDLGEVGRYRINKKLGLETDMDIRVL 381 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 382 TKDDIIEIIKYLIQLVNSNATVDDIDHLSNRRVRTVGEQLSNQFSVGLARMSRTIRERMN 441 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 442 VRDNEVFTPTDLINAKTITSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 501 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYRKV + KV Sbjct: 502 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCIYAKINDLGFIVTPYRKVKNAKVD 561 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 + +V+++A EEE+ + Q N+ L DGSF + V CR + +V +++ +D SP Sbjct: 562 MNNDHIVFMTAEEEEDLIVGQGNAPLRPDGSFIRDYVKCRQDADYPVVDPDQVALVDVSP 621 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S I Sbjct: 622 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMIT 681 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G+VE VDA I I R+ + + + YR+ KF+R+NQN ++ RP+ G Sbjct: 682 AEGNGVVEYVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRRTNQNMTIDLRPICNKG 741 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V+ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED+++ISER+V +DV TS+H++ Sbjct: 742 QRVKAGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAIVISERVVRDDVLTSVHVD 801 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++DE G+I VGA V PGDIL+GKI+PKGES Sbjct: 802 EYSLDVRETKRGMEEFTSDIPNVSEESTKDLDENGVIRVGARVEPGDILIGKISPKGESD 861 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R K S ++ + Sbjct: 862 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--IKTRESKKHDKVVLA 919 Query: 966 LLARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +L+ + G +G + K + ++ + Sbjct: 920 KIDEEYEAKNNDLKDILVDKLLTLTEDKKSQGVKDYTGAEIITKGSSFTAAALKNLEYDG 979 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE + +++L + Y +L+ K + I GD++P GVL++ KV++A Sbjct: 980 IQSNDWTVDEHTNKLIQALIMNYIRKYKMLDAELKRRKFAISIGDELPSGVLQMAKVYIA 1039 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR I GDK+AGRHGNKGIVS+I+ EDMPFL+DG PVD+VLNPLGVPSRMN+GQIFE Sbjct: 1040 KKRKISVGDKLAGRHGNKGIVSKIVRAEDMPFLEDGRPVDLVLNPLGVPSRMNLGQIFEA 1099 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A + LG K + I D D+S Sbjct: 1100 ILGAAGLKLGVKFATPIFDGAKLEDLSEWTEKAGLPHLC--------------------- 1138 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 ST ++DG TGE FD+P TVG Y LKL Sbjct: 1139 -------STHLYDGE--------------------------TGEKFDQPATVGITYFLKL 1165 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 HMV DK+++RS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA++VLQE+LT+KS Sbjct: 1166 GHMVEDKMHSRSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHVLQEILTVKS 1225 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 DD VGR++ YE+IV G+ G PES NVL+ E++ LGLS+ L+ Sbjct: 1226 DDTVGRSKAYEAIVKGDGMPAPGIPESLNVLLHELRGLGLSVKLD 1270 >gi|255534439|ref|YP_003094810.1| DNA-directed RNA polymerase subunit beta [Flavobacteriaceae bacterium 3519-10] gi|255340635|gb|ACU06748.1| DNA-directed RNA polymerase beta subunit [Flavobacteriaceae bacterium 3519-10] Length = 1275 Score = 1298 bits (3358), Expect = 0.0, Method: Composition-based stats. Identities = 577/1369 (42%), Positives = 820/1369 (59%), Gaps = 117/1369 (8%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 G R F I+ PD +++Q S+ F ++ P++R NE L F+ FPIT Sbjct: 11 QGTERINFSAAKGKIETPDFLDIQIQSFKDFFQLDTLPEQRANEALYKTFEENFPITDSR 70 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEF+ Y D P++ +D+C+ R LTY+VPLK L+L D + + Q Sbjct: 71 NQFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQTVV-----QD 125 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +Y+G +P MT G+F+I G +R++V+QLHRSPG+ F +G LY RIIP +G Sbjct: 126 VYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQT---YHANGTKLYYSRIIPFKG 182 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 WM+ D ++++ IDR++K+P+T+ L A+G +S+ +IL F Sbjct: 183 SWMEFTTDINNVMYAYIDRKKKLPLTTLLRAIGFESDKDILQIF---------------- 226 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 DL KVS + + G + L + +L + E V Sbjct: 227 ----DLAEEVKVSKAALKKVEG-------RTLAARVLNTWFEDFVDEDT----------- 264 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 ++V+ E EI ++ V++++ L+ I + ++ I +++ ++ N + I+NTL D Sbjct: 265 -GEVVSIERNEIILDRETVLEKEHLDLILDAGVKSI-LIHKENSNEFSIIQNTLQKDPTN 322 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 K+A+ IYR +R D A + LFF +Y L VGR ++N +L L+ P Sbjct: 323 SEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYSLGEVGRYRLNKKLGLNIPAKT 382 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + KEDII+I++ L++L N K +DDID+L NRR+++VGE L Q+ +GL R+ R+I+E Sbjct: 383 EVLTKEDIISIVRHLIELVNSKAEVDDIDHLSNRRIKTVGEQLSGQFGVGLSRIARTIRE 442 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R++ D + P DL+NAK + S + FF ++QLSQ + N LS ITH RRLSALG GG Sbjct: 443 RMNVRDNEIFTPIDLVNAKTLTSVINSFFGTNQLSQFMDQTNPLSEITHKRRLSALGPGG 502 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVH THYGRICP ET EG NIGL+SSL +A++N+ GFIETPYRKV +G Sbjct: 503 LSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGLYAKINSLGFIETPYRKVTNG 562 Query: 609 KVTNDV--VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 KV V+L+A +EE++ IAQAN + EDG+ + + V R G+ +V +++D ID Sbjct: 563 KVDLKTTAVFLNAEDEEDKVIAQANVEMKEDGTISTDRVIARLDGDYPVVEPQQVDLIDV 622 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 +P Q+ I+ASLIPFLE+DD+NR LMG NM RQAVPLLK EAP VGTG+E VA+ S Sbjct: 623 APNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLKPEAPIVGTGLEQQVARDSRIL 682 Query: 727 IVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 I A+ G VE VDA +I I+ + DL S Y+L KF+++NQ+T + RP V+ Sbjct: 683 INAEGNGTVEYVDADKITIKYERTEDDDLVSFESATKTYKLTKFRKTNQSTTITLRPNVR 742 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 VGD+V++ ++ DG +T+ G+LALGRN++VAFMPW GYNFED+++I+E++V ED FTSIH Sbjct: 743 VGDKVQKGQVLCDGYATENGELALGRNLVVAFMPWKGYNFEDAIVINEKVVREDWFTSIH 802 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 ++E+ + RDTKLG EE+T DIPNVSEE K++DE G+I +GA+V PGDI++GKITPKGE Sbjct: 803 VDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGMIRIGADVKPGDIMIGKITPKGE 862 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 S TPEEKLLRAIFG+KA DV+D SL+ S + G V++ ++F+R+ DK +R+ + Sbjct: 863 SDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVINKKLFSRNIKDKKKRTEEK--LK 920 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPR 1018 +E + + L + +L ++ G+ + + K ++ L+ Sbjct: 921 LEEIENTYKAKFDQLRNTLLEKLGTLVNGKTSQGVNNDLDEEIIGKGVKFTTKLLQSVED 980 Query: 1019 SQWWQ--FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 D ++ L Y+ + ++ + I GD++P G++++ KV Sbjct: 981 YVNVSGADWTVDADKNELIKQLIHNYKIKFNDIQGVKNREKFAISIGDELPAGIIKLAKV 1040 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 +VA KR + GDKMAGRHGNKGIVSRI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI Sbjct: 1041 YVAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPVDIVLNPLGVPSRMNIGQI 1100 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 +ET LGWA LG K + I D I Sbjct: 1101 YETVLGWAGQKLGLKFATPIFDGANIDQI------------------------------- 1129 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 G E+ A L E G + LYDG TGE F +P TVG IYM Sbjct: 1130 ---------------TGYTEQ--------AGLPEFGSTYLYDGGTGERFSQPATVGVIYM 1166 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA+ +L+E+LT Sbjct: 1167 LKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASNILREILT 1226 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 +KSDDV+GR + YE+I G E G PESFNVL+ E+Q LGL + LE Sbjct: 1227 VKSDDVIGRAKTYEAIAKGEAMPEPGIPESFNVLLHELQGLGLDVRLEE 1275 >gi|281422258|ref|ZP_06253257.1| DNA-directed RNA polymerase, beta subunit [Prevotella copri DSM 18205] gi|281403763|gb|EFB34443.1| DNA-directed RNA polymerase, beta subunit [Prevotella copri DSM 18205] Length = 1270 Score = 1295 bits (3350), Expect = 0.0, Method: Composition-based stats. Identities = 574/1367 (41%), Positives = 808/1367 (59%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 9 RVNFASVHNPYPYPDFLDVQLKSFKDFLQLDTPPEERKNDGLYKVFSENFPITDTRNNFV 68 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 69 LEFLDYYIDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 123 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 124 TIPYMTDNGTFVINGAERVVVSQLHRSPGVFFSQG---VHANGTMLYSARIIPFKGSWIE 180 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G + + +IL F Sbjct: 181 FATDINNVMYAYIDRKKKLPVTTLLRAIGYEQDKDILQIFDLAEEVKVNKKNMK------ 234 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+KL + +LKS E V ++ Sbjct: 235 ---------------------AAIGRKLAARVLKSWNEDFVDEDT------------GEV 261 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E + ++EEI S + I + ++ N I NTL D + K Sbjct: 262 VSIERNEVIMERETELTADNIEEIVESGAQTILLHKDEEAANKFTIIFNTLAKDPSNSEK 321 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +LNLDT DVR + Sbjct: 322 EAVNYIYRQLRNADPADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLNLDTDIDVRVL 381 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KEDII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 382 TKEDIIEIIKYLIQLINSSATVDDIDHLSNRRVRTVGEQLANQFSIGLARMTRTIRERMN 441 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 442 VRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 501 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYRKV D KV Sbjct: 502 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCMYAKINDLGFIVTPYRKVNDSKVD 561 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 DVVYL+A +EE++ I Q N+ L DGSF ++V CR + +V +++D++D SP Sbjct: 562 MANEDVVYLTAEDEESKIIGQGNAPLTVDGSFIRDVVKCRQDADYPVVGPDQVDYVDVSP 621 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S + Sbjct: 622 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMVT 681 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ + + + YR+ KF+R+NQN ++ RP+ G Sbjct: 682 AEGEGVIEYVDATTIRILYDRTEDDEFVSFEPALKEYRIPKFRRTNQNMTIDLRPICNKG 741 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V++ DI+ +G +T+ G+LALGRN+LVA++PW GYN+ED+++ISERMV +DV TS+H++ Sbjct: 742 QRVKKGDILTEGYATEKGELALGRNLLVAYIPWKGYNYEDAVVISERMVRDDVLTSVHVD 801 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ GI+ VGA + PGDI++GKI+PKGES Sbjct: 802 EYSLDVRETKRGVEEFTSDIPNVSEEATKDLDDNGIVRVGARIEPGDIMIGKISPKGESD 861 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R K S ++ + Sbjct: 862 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--IKTRESKKQDKIILA 919 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQ-----NAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +L+ + G +G + K + ++ + Sbjct: 920 KIDEEYEAKGNDLKDILVDKLLTLTEGMTSEGVKDYTGAEIITKGSTFTATALKNLEYDG 979 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 +DE ++ L + Y L+ K + I GD++P G+L++ KV++A Sbjct: 980 VQSNKWTKDEHTNGLIQRLIMNYIRKYKQLDAELKRRKFAITIGDELPSGILQMAKVYIA 1039 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPF+ DG PVD+VLNPLGVPSRMN+GQIFE Sbjct: 1040 KKRKIQVGDKLAGRHGNKGIVSKVVRLEDMPFMADGRPVDMVLNPLGVPSRMNLGQIFEC 1099 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+S Sbjct: 1100 ILGAAGKKLGVKFATPIFDGAKLDDLSEWTD----------------------------- 1130 Query: 1200 WKSGVP--VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG GE FD+P TVG Y L Sbjct: 1131 -KAGLPRFCSTYLYDGET--------------------------GEQFDQPATVGMTYFL 1163 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LT+ Sbjct: 1164 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTV 1223 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G+ G PES NVL+ E++ LGLSI L+ Sbjct: 1224 KSDDVVGRSKAYEAIVKGDPMPTPGIPESLNVLLHELRGLGLSIKLD 1270 >gi|323344620|ref|ZP_08084844.1| DNA-directed RNA polymerase subunit beta [Prevotella oralis ATCC 33269] gi|323093890|gb|EFZ36467.1| DNA-directed RNA polymerase subunit beta [Prevotella oralis ATCC 33269] Length = 1270 Score = 1293 bits (3346), Expect = 0.0, Method: Composition-based stats. Identities = 571/1367 (41%), Positives = 807/1367 (59%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 9 RVNFASVHNPMPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 68 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 69 LEFLDYYIDPPRYTIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 123 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VV+QLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 124 TIPYMTDNGTFVINGAERVVVAQLHRSPGVFFGQG---VHANGTMLYSARIIPFKGSWIE 180 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 181 FATDINNVMYAYIDRKKKLPVTTLLRAIGYEADKDILRIFDLAEELKVNKK--------- 231 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G++L + +LKS E V ++ Sbjct: 232 ------------------NVKAAVGRRLAARVLKSWNEDFVDEDT------------GEV 261 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E I +++EI S I + DS + I NTL D + K Sbjct: 262 VSIERNEVIMERETEITADNVDEILDSGASTILLHKDADSAGKYSIIFNTLAKDPSNSEK 321 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +L L+T D+R + Sbjct: 322 EAVNYIYRQLRNADPADDASAREVFQNLFFSDKRYDLGEVGRYRINRKLGLNTDMDIRVL 381 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 382 TKDDIIEIIKYLIQLINSNATVDDIDHLSNRRVRTVGEQLANQFSIGLARMSRTIRERMN 441 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 442 VRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 501 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFIETPYR V +GKV Sbjct: 502 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYAKINELGFIETPYRNVKNGKVD 561 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 D+V+L+A EEE++ I Q N+ L GSF V CR + +V +++D +D SP Sbjct: 562 MDNKDIVFLTAEEEEDKLIGQGNAPLTSSGSFVRNYVKCRQDADYPVVSPDQVDLMDVSP 621 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S I Sbjct: 622 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKKVCEDSRTMIT 681 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ E + + YR+ KF+R+NQN ++ RP+ G Sbjct: 682 AEGDGVIEYVDATTIRILYDRTEEEEFVSFEPALKEYRIPKFRRTNQNMTIDLRPICNKG 741 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 +V+ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED+++ISERMV +DV TS+H++ Sbjct: 742 QKVKAGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAVVISERMVRDDVLTSVHVD 801 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ G+I VGA V PGDI++GKI+PKGES Sbjct: 802 EYSLDVRETKRGVEEFTSDIPNVSEEATKDLDDNGVIRVGARVEPGDIIIGKISPKGESD 861 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG ++D ++F+R K + ++ + Sbjct: 862 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVIIDKKMFSRA--IKTRETKKQDKITLA 919 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQ-----NAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +L+ +L G+ +G + K + ++ + Sbjct: 920 KIDEEYEAKNNDLKDILVDKLLTLLEGKNSQGVKDYTGAEIITKGSKFTAAALKNLEYDG 979 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE V+ L + Y +L+ K + I GD++P G+L++ KV+VA Sbjct: 980 IQSNGWTNDEHKNVLVQKLIMNYIRKYKLLDAELKRRKFAISIGDELPSGILQMAKVYVA 1039 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1040 KKRKIQVGDKLAGRHGNKGIVSKVVRMEDMPFLEDGRPVDLVLNPMGVPSRMNLGQIFEA 1099 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K+ + I D D+ Sbjct: 1100 ILGAAGKKLGVKLATPIFDGAKLEDLQEWTD----------------------------- 1130 Query: 1200 WKSGVP--VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TG FD+P TVG Y L Sbjct: 1131 -KAGLPRLCSTYIYDGE--------------------------TGTRFDQPATVGITYFL 1163 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTI Sbjct: 1164 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTI 1223 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDD VGR++ YESIV G+ G PES NVL+ E++ LGLS+ L+ Sbjct: 1224 KSDDTVGRSKAYESIVKGDAMPTPGIPESLNVLLHELRGLGLSVKLD 1270 >gi|284039326|ref|YP_003389256.1| DNA-directed RNA polymerase subunit beta [Spirosoma linguale DSM 74] gi|283818619|gb|ADB40457.1| DNA-directed RNA polymerase, beta subunit [Spirosoma linguale DSM 74] Length = 1271 Score = 1293 bits (3345), Expect = 0.0, Method: Composition-based stats. Identities = 571/1373 (41%), Positives = 807/1373 (58%), Gaps = 139/1373 (10%) Query: 26 IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPK 85 PD +++Q S+ F ++ ++R EGL F+ FPI+ LEF+ Y DPPK Sbjct: 4 YPDFLDIQVKSFKDFFQLDTPSNQRSEEGLFKVFQENFPISDSRENFKLEFIDYLVDPPK 63 Query: 86 FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFV 145 + VD+ + R LTY+VPLK LRL D D + EQ +++G++P MT+ G+FV Sbjct: 64 YSVDESIDRGLTYSVPLKAKLRLTNNDPDNEDF-----ETIEQEVFLGNIPYMTEKGSFV 118 Query: 146 IKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVR 205 I G +R++VSQLHRSPG+ F K +G LY+ RIIP +G W++ D ++++ Sbjct: 119 INGAERVIVSQLHRSPGVFFSMSK---HTNGTKLYSARIIPFKGSWIEFSTDVNNVMYAY 175 Query: 206 IDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSL 264 IDR++K PVT+ L A+G S+ +IL F Sbjct: 176 IDRKKKFPVTTLLRAIGFGSDKDILDLFGLSEE--------------------------- 208 Query: 265 VDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEA 324 V G++L + +L++ E V ++V+ E+ +E Sbjct: 209 VPATPANLKKAIGRRLAARVLRTWTEDFVDEDT------------GEVVSISRNEVLLER 256 Query: 325 GDVIDEKSLEEIFHSEIRDIPILYVDS-VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 I ++ I S + + + D + + I NTL D + K+A+ IYR +R Sbjct: 257 DSAISADDIDVITESGQKSVILHKEDMNMADYNIIYNTLQKDSSNSEKEAVEQIYRQLRN 316 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKIL 443 D A + LFF +YDL VGR ++N +L LD D++ + EDI++I+K L Sbjct: 317 ADAPDEQTAREIIQSLFFSDKRYDLGDVGRYRINKKLGLDISSDMKVLTTEDIVSIVKYL 376 Query: 444 VDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL 503 + L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+IKER++ D + P DL Sbjct: 377 IGLINSKAVVDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTIKERMNVRDNEDFKPVDL 436 Query: 504 INAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHP 563 INA+ + S + FF ++QLSQ + N L+ +TH RR+SALG GG++R RAG E+RDVH Sbjct: 437 INARTLSSVINSFFGTNQLSQFMDQTNPLAEVTHKRRMSALGPGGLSRERAGFEVRDVHY 496 Query: 564 THYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTND--VVYLSAME 621 THYGR+C ET EG NIGL+SSL +A++N+ GFIETPYR + +GKV+ D V+YL+A E Sbjct: 497 THYGRLCTIETPEGPNIGLISSLCVYAKINSMGFIETPYRIIENGKVSMDKPVMYLTAEE 556 Query: 622 EENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPF 681 E+ YIAQAN+ +D+ G+F + + R G+ + + F+D +P Q+VS+AAS+IPF Sbjct: 557 EDTHYIAQANAGIDKKGNFQVDRLKARFEGDFPMAEPANVTFMDIAPNQIVSVAASMIPF 616 Query: 682 LENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAI 741 LE+DD+NR LMG NMQRQAVPLL+ EAP VGTG+E VA S ++A+ G++E VD+ Sbjct: 617 LEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLEGRVAVDSRTLVIAEADGVIEFVDST 676 Query: 742 RIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGP 798 +I+++ + Y L+KF+R+NQ+TC+N +P V G V++ D++ +G Sbjct: 677 KIIVKYNLDEDQMAVTFDEDRKTYNLIKFRRTNQDTCINIKPTVLKGQRVKKGDVLCEGY 736 Query: 799 STDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGP 858 +T G+LALGRNM VAFMPW GYNFED+++ISER+V ED+FTSIHIEEFE+ RDTK G Sbjct: 737 ATQAGELALGRNMKVAFMPWQGYNFEDAIVISERVVREDIFTSIHIEEFELEVRDTKRGE 796 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 EE+T +IPNVSEE ++N+DE GI+ VG EV GDIL+GKITPKGES TPEEKLLRAIFG Sbjct: 797 EELTSEIPNVSEETVRNLDENGIVRVGTEVKEGDILIGKITPKGESDPTPEEKLLRAIFG 856 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVIL 978 +KA DV+D S + P + G V+D ++F R K +R +++++ L + E Sbjct: 857 DKAGDVKDASKKAPPSLKGVVIDTKLFARP--AKEDRGKH--KDEVKALMKKYGRELNDF 912 Query: 979 DRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRSQWWQF--------- 1024 + +L+ +L G+ + G + K S I+E + Sbjct: 913 RARMIEKLVALLDGKTSAGVKHKFGDEIVSKGVKFSRKNITENLFPDRNAYRDESSYAVP 972 Query: 1025 -------------AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 DEKV V L Y +S + RFK + ++ GD++P G++ Sbjct: 973 EEANLLSDMNLEGWTDDEKVNMMVVELVKSYNNRRSEITGRFKRERFTLEVGDELPAGIV 1032 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 ++ KV++A KR ++ GDKMAGRHGNKG+V+RI+ EDMPFL+DGT VDIVLNPLGVPSRM Sbjct: 1033 KLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVRDEDMPFLEDGTKVDIVLNPLGVPSRM 1092 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 N+GQI+ET L WA L +K + I D ++ + Sbjct: 1093 NLGQIYETVLAWAGQKLDRKYATPIFDGATEQQVADELNEAGL----------------- 1135 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 P F G++ LY+GLTG+ FD+PVTV Sbjct: 1136 -----------------PSF--------------------GRTYLYNGLTGDRFDQPVTV 1158 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G IYMLKL H+V DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA+ +L Sbjct: 1159 GIIYMLKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASNIL 1218 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 QE+LT+KSDDVVGR + YE+IV G + + PESFNVLV E++ L L I LE Sbjct: 1219 QEILTVKSDDVVGRAKAYEAIVKGENLPKPNIPESFNVLVHELRGLALEITLE 1271 >gi|288801081|ref|ZP_06406537.1| DNA-directed RNA polymerase, beta subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332015|gb|EFC70497.1| DNA-directed RNA polymerase, beta subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 1269 Score = 1292 bits (3344), Expect = 0.0, Method: Composition-based stats. Identities = 566/1365 (41%), Positives = 801/1365 (58%), Gaps = 118/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 9 RINFASVHNPMPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 68 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 69 LEFLDYYIDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 123 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VV+QLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 124 TIPYMTHNGTFVINGAERVVVAQLHRSPGVFFGQG---VHANGTMLYSARIIPFKGSWIE 180 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +++ +IL F + Sbjct: 181 FATDINNVMYAYIDRKKKLPVTTLLRAIGYETDNDILQIFDLAEEVKVNKKVLKASI--- 237 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+KL + +LK+ E V ++ Sbjct: 238 ------------------------GRKLAARVLKTWNEDFVDEDT------------GEV 261 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ ++ I E+++E+I S I + + N + I NTL D + K Sbjct: 262 VSIERNEMIMDRETEITEENMEDILDSGCSTILLHKDSEMANKYSLIFNTLAKDPSNTEK 321 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +L L+ D R + Sbjct: 322 EAVNYIYRQLRNADPADDASAREVFQNLFFSDKRYDLGEVGRYRINRKLGLEIDMDTRVL 381 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DIIAII+ L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 382 TKDDIIAIIRYLIQLINSNATVDDIDHLSNRRVRNVGEQLANQFSIGLARMSRTIRERMN 441 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 442 VRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 501 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A +N GFI TPYR V D KV Sbjct: 502 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYANINDLGFIVTPYRTVKDSKVE 561 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 +VVYL+A EEEN+ I Q N+ L DGSF V CR + +V E +D +D SP Sbjct: 562 MDNKNVVYLTA-EEENKIIGQGNAPLTVDGSFIRTTVKCRQDADYPVVAPEHVDLVDVSP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++ASLIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S I Sbjct: 621 QQIASVSASLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKKVCEDSRTMIT 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G+++ VDA I I R+ E D + YR+ KF+R+NQN ++ RP+ G Sbjct: 681 AEGDGVIDYVDATTIRILYDRTEEEDFVSFEPALKEYRIPKFRRTNQNMTIDLRPICTKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V++ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED++++SER+V +D+ TS+H++ Sbjct: 741 QRVKQGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAIVLSERIVRDDILTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ GI+ VGA + PGDIL+GKI+PKGES Sbjct: 801 EYSLDVRETKRGVEEFTSDIPNVSEEATKDLDDNGIVRVGARIEPGDILIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R K + ++ + Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--IKTRETKKQDKVLLA 918 Query: 966 LLARDKDDEQVILDRNIYSRL-----MEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 L + + + L + +L ++ G +G + K + ++ ++ Sbjct: 919 SLEEEYEAKNNDLKDILVDKLLVLTEDKVSEGVKDYTGAEIVTKGSKFTTTILKNLEYDG 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE ++ L + Y +L+ K + I GD++P G+L++ KV++A Sbjct: 979 IQAGGWTSDEHTNGLIKQLIMNYIHKYKLLDAELKRRKFAISIGDELPSGILQMAKVYIA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR I GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNPLGVPSRMN+GQIFE Sbjct: 1039 KKRKIGVGDKLAGRHGNKGIVSKVVRMEDMPFLEDGRPVDLVLNPLGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+S Sbjct: 1099 ILGAAGKKLGVKFATPIFDGAKLDDLSEWTEKAGLPHLC--------------------- 1137 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 ST ++DG TGE FD+P TVG Y LKL Sbjct: 1138 -------STHLYDGE--------------------------TGEQFDQPATVGVTYFLKL 1164 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA++VLQE+LT+KS Sbjct: 1165 GHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHVLQEILTVKS 1224 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 DD VGR++ YE+IV G+ G PES NVL+ E++ LGLSI L+ Sbjct: 1225 DDTVGRSKAYEAIVKGDPMPTPGIPESLNVLLHELRGLGLSIKLD 1269 >gi|282878714|ref|ZP_06287482.1| DNA-directed RNA polymerase, beta subunit [Prevotella buccalis ATCC 35310] gi|281299105|gb|EFA91506.1| DNA-directed RNA polymerase, beta subunit [Prevotella buccalis ATCC 35310] Length = 1270 Score = 1292 bits (3344), Expect = 0.0, Method: Composition-based stats. Identities = 568/1365 (41%), Positives = 802/1365 (58%), Gaps = 117/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + PD ++VQ S+ FL + P+ER N+GL F FPIT + Sbjct: 9 RINFASVHNPVPFPDFLDVQLKSFKDFLQLETPPEERKNDGLYKVFAENFPITDTRNNFV 68 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +++CL R LTY+VPLK ++L D D I Q +++G Sbjct: 69 LEFLDYFIDPPRYSIEECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 123 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 124 TIPYMTDNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGTMLYSARIIPFKGSWIE 180 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G S+ +IL F Sbjct: 181 FATDINNVMYAYIDRKKKLPVTTLLRAIGYQSDKDILQIFDLAEEVKVNKKNMK------ 234 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G++L + +LKS E V ++ Sbjct: 235 ---------------------AAVGRRLAARVLKSWNEDFVDEDT------------GEV 261 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E I +++++I S + + + N A I NTL D + K Sbjct: 262 VSIERNEVIMERETEITAENVQDILDSGASTLLLHKDSELANKFAIIFNTLSKDPSNSEK 321 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A+ +FN LFF +YDL VGR ++N +L LDT D+R + Sbjct: 322 EAVTYIYRQLRNADPADDASAKEVFNNLFFSDKRYDLGEVGRYRINKKLGLDTDMDIRVL 381 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 382 TKDDIIEIIKYLIQLVNSNATVDDIDHLSNRRVRTVGEQLSNQFSIGLARMSRTIRERMN 441 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 442 VRDNEVFTPTDLINAKTITSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 501 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYRKV D KV Sbjct: 502 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYAKINDMGFIVTPYRKVKDKKVD 561 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 + +V+++A EEE+ + Q N+ L +DGSF + V CR + +V +++ +D SP Sbjct: 562 MNNDHIVFMTAEEEEDLPVGQGNAPLRKDGSFIRDYVKCRQDADYPVVDPDEVALMDVSP 621 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A+LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V ++S I Sbjct: 622 QQIASVSAALIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCENSRTMIT 681 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ E + + YR+ KF+R+NQN ++ RP+ G Sbjct: 682 AEGDGVIEYVDATTIRILYDRTEEEEFVSFEPALKEYRIPKFRRTNQNMTIDLRPICVKG 741 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V+ DI+ +G +T+ G+LALGRNMLVA+MPW GYN+ED+++ISER+V +DV TS+H++ Sbjct: 742 QRVKDGDILTEGYATENGELALGRNMLVAYMPWKGYNYEDAVVISERVVRDDVLTSVHVD 801 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++DE GII VGA V PGDIL+GKI+PKGES Sbjct: 802 EYSLDVRETKRGMEEFTNDIPNVSEEATKDLDENGIIRVGARVEPGDILIGKISPKGESD 861 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F R K + ++ + Sbjct: 862 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFTRA--IKTRETKKHDKLILA 919 Query: 966 LLARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + + + + L + +L+ + G +G + K + ++ + Sbjct: 920 KIDEEYEAKNTDLKDILVDKLLTLTESKKSQGVKDYTGAEIITKGSNFTAAALKNLEYDG 979 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE +++L + Y +L+ K + I GD++P GVL++ KV++A Sbjct: 980 IQSNDWTDDEHTNGLIQTLILNYIRKYKLLDAELKRRKFAISIGDELPTGVLQMAKVYIA 1039 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR I GDK+AGRHGNKGIVS+I+ EDMPFL+DG PVD+VLNPLGVPSRMN+GQIFE Sbjct: 1040 KKRKISVGDKLAGRHGNKGIVSKIVRVEDMPFLEDGRPVDLVLNPLGVPSRMNLGQIFEA 1099 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+S Sbjct: 1100 ILGAAGRKLGVKFATPIFDGAKLDDLSEWTDKAGLPHLC--------------------- 1138 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 ST ++DG TG+ FD+P TVG Y LKL Sbjct: 1139 -------STHLYDGE--------------------------TGKKFDQPATVGVTYFLKL 1165 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA++VLQE+LTIKS Sbjct: 1166 GHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHVLQEILTIKS 1225 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 DD VGR++ YE+IV G+ G PES NVL+ E++ LGLS+ L+ Sbjct: 1226 DDTVGRSKAYEAIVKGDAMPTPGIPESLNVLLHELRGLGLSVKLD 1270 >gi|171914821|ref|ZP_02930291.1| DNA-directed RNA polymerase subunit beta [Verrucomicrobium spinosum DSM 4136] Length = 1282 Score = 1286 bits (3329), Expect = 0.0, Method: Composition-based stats. Identities = 614/1398 (43%), Positives = 845/1398 (60%), Gaps = 148/1398 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R FGK E ++ P+LIE+Q SY+ FL +IAP +R + GLQA F+ VFPI+++ Sbjct: 3 QRINFGKLKEPVEPPNLIEIQLKSYEEFLQKDIAPSKRKDLGLQAVFREVFPISSYDEKM 62 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 L+F YE PK + + T++ PL +T +++ + GA K++ +YM Sbjct: 63 TLDFTQYEIGEPKLNPLQAIREAETFSAPLYVT-----YELRDEAGA------KQERVYM 111 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G+LP+MT GTFVI G +R+VVSQLHRSPGI F+ + L+G+ LY RIIPD+G W+ Sbjct: 112 GELPMMTTRGTFVINGAERVVVSQLHRSPGICFETQQ---HLNGRWLYGFRIIPDRGTWL 168 Query: 193 DIEFDSKDIIHVRID---RRRKVPVTSFLMALGM-DSEEILSTFYPKIVYSQRGDFWCFP 248 +++FD+ D+++V +D RRRK T+ L +G E+IL FYP + Sbjct: 169 EVQFDTNDLLYVYLDRRRRRRKFLATTLLRVIGYPGDEDILKLFYPIEDLKLKE-----T 223 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVI-ESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 ++ DL DI GE ++ + + LT G+++ L + G K + Sbjct: 224 MNEEDLAQKVIFR----DILDGELIVARAYEPLTLGIVRQLIQLGHKSI----------- 268 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 + L I +L D Sbjct: 269 ----------------RCVTATQDDL------------------------IIASLRKDPA 288 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 D +AL +IYR +RPGD T A ++ LFFD +YDL+ VGR K+N +L + + Sbjct: 289 HDEDEALKEIYRRLRPGDPPTIPNARALVKRLFFDPKRYDLTRVGRYKINQKLGIKVDSE 348 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 R + D+++ ++ L LR G+G +DDID+LG+RRVR+VGE+L NQ R+GL R ER +K Sbjct: 349 ERILTAMDVVSSLRYLFKLRAGEGVLDDIDHLGSRRVRAVGELLANQCRVGLARTERLVK 408 Query: 488 ERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 ER++ D +D + PQ LIN K + + V +FF SQLSQ + +N L+ +TH RRLSALG Sbjct: 409 ERMTLFDVNMDVMTPQKLINPKALSAVVRDFFARSQLSQFMDQINPLAELTHKRRLSALG 468 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVHP+HYGRICP ET EG NIGL++SL S+AR+N +GFIETP+RKV Sbjct: 469 PGGLNRDRAGFEVRDVHPSHYGRICPIETPEGPNIGLINSLCSYARINEFGFIETPFRKV 528 Query: 606 CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 G VT+ + YL+A +EEN +AQAN+ +DE+G F + V R G+ + V E+ +D Sbjct: 529 ESGVVTDKIEYLTADQEENHNVAQANNIIDENGKFKSDKVSVRYRGDFLEVAPEQATLMD 588 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQ VPLL+AEAP VGTGMES A+ S A Sbjct: 589 VSPKQMVSVAASLIPFLEHDDANRALMGSNMQRQGVPLLEAEAPLVGTGMESKAARDSQA 648 Query: 726 AIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTS--------------GVDIYRLMKFQRSN 771 IV+ GIV A I++ + G+ Y L KF RSN Sbjct: 649 VIVSDSGGIVAAATADYIIVTKDGQLPISEKAFAAEPTKITTDPERGIYFYPLRKFMRSN 708 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 TC+NQRPLV+ G +V++ D++ADGP TD G+LALGRNMLVAFMPW+GYNFED+++IS Sbjct: 709 AGTCINQRPLVERGQKVKKGDVLADGPCTDHGELALGRNMLVAFMPWNGYNFEDAIVISR 768 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+V ED++TSIHIE+FEV ARDTKLGPEEITRDIPNV +E L+N+ G++ +GAEV PG Sbjct: 769 RVVKEDIYTSIHIEDFEVGARDTKLGPEEITRDIPNVGDEALRNLGADGVVRIGAEVKPG 828 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGKITPK E+ + PEE+LLRAIFGEKA DV+DTSLRVPSG +G V+DVR+ +R+G D Sbjct: 829 DILVGKITPKSETELAPEERLLRAIFGEKAADVKDTSLRVPSGCTGIVMDVRVSSRNGAD 888 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL--- 1008 K S S +++QI+ + + ++ L + +L EIL + + V+ Sbjct: 889 KERLSPSEQKKQIKQVTEEHKNKVEQLTEQLTEKLSEILLNEKIPLDVVNGETGEVIIGA 948 Query: 1009 ---SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD 1065 + + + + ++ + + +E + + +++++ G++ Sbjct: 949 NKKITKTLLRTLAENYRTVEIDQSPIRNKIMDIVAAFEAKFDEADIERERGLDRLEQGEE 1008 Query: 1066 MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPL 1125 M GV++ V+VF+A KR + GDKMAGRHGNKG+V+ I+P EDMPFL+DGTPVDI LNPL Sbjct: 1009 MESGVIKQVRVFIASKRKLSVGDKMAGRHGNKGVVATIVPEEDMPFLEDGTPVDICLNPL 1068 Query: 1126 GVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI 1185 GVPSRMNVGQ+ ETHLG A LG + + + D I + Sbjct: 1069 GVPSRMNVGQVLETHLGVAAKALGFTVATPVFDGIKEDKILGYLKEAK------------ 1116 Query: 1186 SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPF 1245 +TP F+ L+ G+S L DG +GEPF Sbjct: 1117 ---------------------ATPGFEWI------------GLN--GKSKLIDGRSGEPF 1141 Query: 1246 DRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAY 1305 V VGYIYMLKL H+V+DK++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW ++AY Sbjct: 1142 ALEVVVGYIYMLKLGHLVADKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWALEAY 1201 Query: 1306 GAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 GAAY LQE+LT+KSDDV GRTR+YESIV G+++ E GTPESFNVL+KEMQ+LGL + + N Sbjct: 1202 GAAYTLQELLTVKSDDVQGRTRIYESIVKGDNSLEAGTPESFNVLIKEMQSLGLDVKVVN 1261 Query: 1366 SRTKNSAKMEEIPDFNKC 1383 + + + Sbjct: 1262 RNSGEEEILGGGGSYATA 1279 >gi|227536131|ref|ZP_03966180.1| DNA-directed RNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|300772103|ref|ZP_07081973.1| DNA-directed RNA polymerase subunit beta [Sphingobacterium spiritivorum ATCC 33861] gi|227244028|gb|EEI94043.1| DNA-directed RNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|300760406|gb|EFK57232.1| DNA-directed RNA polymerase subunit beta [Sphingobacterium spiritivorum ATCC 33861] Length = 1269 Score = 1285 bits (3325), Expect = 0.0, Method: Composition-based stats. Identities = 574/1366 (42%), Positives = 801/1366 (58%), Gaps = 119/1366 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F + ++ID PD ++VQ S+ F + D R EGL F FPI+ Sbjct: 9 ERVNFATSKKVIDYPDFLDVQLQSFKEFFQLETTSDNRHQEGLFKVFSENFPISDSRNIF 68 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++D+ +C+ R LTY+VPLK L+L D + + Q +Y+ Sbjct: 69 VLEFLDYFIDPPRYDIQECIERGLTYSVPLKAKLKLSCNDEEHEDFETIV-----QDVYL 123 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTFV+ G +R++VSQLHRSPG+ F + +G LY+ R+IP +G W+ Sbjct: 124 GTIPYMTPKGTFVVNGAERVIVSQLHRSPGVFFGQSR---HTNGTKLYSARVIPFKGSWI 180 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K PVT+ L A+G DS+ +IL F Sbjct: 181 EFATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFDLADEVKVSKSGLKK---- 236 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G++L + +LK E V + Sbjct: 237 -----------------------YVGRRLAARVLKKWVEDFVDEDT------------GE 261 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVTDKNKD 369 +V+ + EI +E V++E ++ I + ++ + + D+ NN Y I NTL D + Sbjct: 262 VVSIDRNEIILERETVLEEDHIDFIIDAGVKSVILAKDDASNNADYSIIYNTLQKDTSNS 321 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 K+A+ IYR +R + A + + LFF +YDL VGR ++N +L LDTP D + Sbjct: 322 EKEAVEHIYRQLRNAEPPDEETARGIIDRLFFSDKRYDLGDVGRYRINRKLQLDTPADTK 381 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + +EDIIAI+K L++L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+I+ER Sbjct: 382 VLTREDIIAIVKYLINLINSKAEVDDIDHLSNRRVRTVGEQLYAQFGVGLSRMARTIRER 441 Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ D + P DLINA+ + S + FF ++QLSQ + N L+ ITH RRLSALG GG+ Sbjct: 442 MNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGL 501 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC--D 607 +R RAG E+RDVH THYGR+C ET EG NIGL+SSL A++N GFIETPYRKV Sbjct: 502 SRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLAVHAKINNLGFIETPYRKVEAGR 561 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 V V+YLSA +E+ + IAQAN+ DE G+F + V R G+ ++ EK+D +D S Sbjct: 562 VVVEEPVIYLSAEDEDEKTIAQANAIYDEKGNFEDPKVKARYEGDFPIIEPEKLDLMDVS 621 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+ SIAASLIPFLE+DD+NR LMG NMQRQAVPLL+ +AP VGTG+E VA+ S I Sbjct: 622 PNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRPQAPIVGTGLEGRVARDSRTLI 681 Query: 728 VAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+VE VDA I IR + L + Y+L+KF+++NQ+TC+N +P+V+ Sbjct: 682 NAEGNGVVEYVDAEEIKIRYDRTEDDRLVSFDDDIKTYKLIKFKKTNQSTCINLKPIVRK 741 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V + ++ +G +T+ G+LALGRN+ VAFMPW GYNFED+++ISER+VS+D+FTS+HI Sbjct: 742 GQRVEKGQVLCEGYATEDGELALGRNLKVAFMPWQGYNFEDAIVISERVVSQDIFTSLHI 801 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EEFE+ RDTK G EE+T DIPNVSEE K++DE GII +GAEV GDIL+GKITPKGES Sbjct: 802 EEFELEVRDTKRGEEELTADIPNVSEEATKDLDENGIIRIGAEVGEGDILIGKITPKGES 861 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ P + G V+D ++F+R + S VER+ + Sbjct: 862 DPSPEEKLLRAIFGDKAGDVKDASLKTPPSIKGVVIDTKLFSRA----KKMSKEVERKTL 917 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-----KSTVLSSDLISEYPRS 1019 E L D +L + +L I+ G+ + +K K + ++++ Sbjct: 918 EKLETTHDRNVKVLKDRLVDKLFTIVNGKTSQGIYNVYKELLVPKGAKFTQKILADLNYD 977 Query: 1020 QWW-QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+ +++ + + FK + I GD++P G++++ KV+V Sbjct: 978 NINPTGWTTDDDKNELIKAALHFFNIKLNEELGAFKREKFAISVGDELPSGIVQMAKVYV 1037 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+E Sbjct: 1038 AKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNLGQIYE 1097 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 T LGWA LG K + I D ++ + ++ D Sbjct: 1098 TVLGWAGQKLGVKFATPIFDGAEPSEVEGWIAKAGLPASGRTYLYNGLTGDR-------- 1149 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 FD + ML K Sbjct: 1150 ------------FDQPTTVGVIYML----------------------------------K 1163 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA+ +LQE+LT+K Sbjct: 1164 LGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASNILQEILTVK 1223 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 SDDVVGR + YE+IV GN+ PESFNVLV E++ LGL I L+ Sbjct: 1224 SDDVVGRAKTYEAIVKGNNLPTPSVPESFNVLVHELRGLGLDITLD 1269 >gi|300776017|ref|ZP_07085876.1| DNA-directed RNA polymerase subunit beta [Chryseobacterium gleum ATCC 35910] gi|300505150|gb|EFK36289.1| DNA-directed RNA polymerase subunit beta [Chryseobacterium gleum ATCC 35910] Length = 1273 Score = 1283 bits (3321), Expect = 0.0, Method: Composition-based stats. Identities = 571/1365 (41%), Positives = 805/1365 (58%), Gaps = 117/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F I PD +++Q S+ F ++ P+ R E L F+ FPIT + Sbjct: 13 RINFSSAKGKIITPDFLDIQIESFREFFQLDTLPEARKTEALYKTFQENFPITDSRNQFV 72 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y D P++ +D+C+ R LTY+VPLK L+L D + + Q +Y+G Sbjct: 73 LEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQTVV-----QDVYLG 127 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT G+F+I G +R++V+QLHRSPG+ F +G LY RIIP +G WM+ Sbjct: 128 PVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQT---YHANGTKLYYSRIIPFKGSWME 184 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D +++ IDR++K+P+T+ L A+G +S+ +IL F Sbjct: 185 FTTDINSVMYAYIDRKKKLPLTTLLRAIGYESDKDILQIF-------------------- 224 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 DL KVS + + G + L + +L + E V ++ Sbjct: 225 DLAEEVKVSKAALKKVEG-------RTLAARVLNTWFEDFVDEDT------------GEV 265 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 V+ E EI ++ +++++ L+ I + ++ I +++ ++ N + I+NTL D K+ Sbjct: 266 VSIERNEIILDRETILEKEHLDLILDAGVKSI-LIHKENSNEFSIIQNTLQKDPTNSEKE 324 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 A+ IYR +R D A + LFF +Y L VGR ++N +L L+ P + Sbjct: 325 AVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYSLGEVGRYRLNKKLGLNIPTTTEVLT 384 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 KEDIIAI++ L++L N K +DDID+L NRR+++VGE L Q+ +GL R+ R+IKER++ Sbjct: 385 KEDIIAIVRHLIELVNSKAEVDDIDHLSNRRIKTVGEQLAGQFGVGLSRIARTIKERMNV 444 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 D + P DL+NAK + S + FF ++QLSQ + N LS ITH RRLSALG GG++R Sbjct: 445 RDNEIFTPLDLVNAKTLTSVINSFFGTNQLSQFMDQTNPLSEITHKRRLSALGPGGLSRE 504 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV-- 610 RAG E+RDVH THYGRICP ET EG NIGL+SSL +A++N GFIETPYRKV GKV Sbjct: 505 RAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGIYAKINNLGFIETPYRKVESGKVDL 564 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 D +YL+A +EE + IAQAN L ++G F + + R G+ +V ++D ID +P Q Sbjct: 565 NADPIYLNAEDEEAKVIAQANVELSDNGDFETDRIIARLDGDYPVVEPNQVDLIDVAPNQ 624 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 + I+ASLIPFLE+DD+NR LMG NM RQAVPLLK +AP VGTG+E VA+ S I A+ Sbjct: 625 ISGISASLIPFLEHDDANRALMGSNMMRQAVPLLKPQAPIVGTGLEQQVARDSRILINAE 684 Query: 731 RAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 G V+ VDA +IVI+ + DL S Y L KF+++NQ+T + RP V+VGD Sbjct: 685 GTGTVQYVDADKIVIKYERSEDEDLVQFESATKTYNLTKFRKTNQSTTITLRPNVRVGDV 744 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V + ++ DG +T+ G+LALGRN++VAFMPW GYNFED+++I+E++V ED FTSIH++E+ Sbjct: 745 VEKGQVLCDGYATEKGELALGRNLVVAFMPWKGYNFEDAIVINEKVVREDWFTSIHVDEY 804 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 + RDTKLG EE+T DIPNVSEE K++DE G+I +GAEV PGDI++GKITPKGES T Sbjct: 805 SLEVRDTKLGMEELTADIPNVSEEATKDLDENGMIRIGAEVKPGDIMIGKITPKGESDPT 864 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLLRAIFG+KA DV+D SL+ S + G V++ ++F+R+ DK +R+ ++E + Sbjct: 865 PEEKLLRAIFGDKAGDVKDASLKADSSLRGVVINKKLFSRNIKDKKKRTEEK--LKLEEI 922 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRSQWW 1022 + L + +L ++ G+ + + K + L++ Sbjct: 923 ENTYKAKFDELRNTLIEKLNTLVSGKTSQGVHNDLDEEIIGKGVKFTHKLLTSVEDYVNV 982 Query: 1023 --QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 D ++ L Y+ + ++ + I GD++P G++++ KV++A Sbjct: 983 SGSDWTVDADKNELIKQLIHNYKIKYNDIQGVKNREKFAISIGDELPAGIMKLAKVYIAK 1042 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR + GDKMAGRHGNKGIVSRI+ EDMPFL+DGTPVDIVLNPLGVPSRMN+GQI+ET Sbjct: 1043 KRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETV 1102 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LGWA LG K + I D I+ Sbjct: 1103 LGWAGQKLGMKFATPIFDGATLDQITEYTDKAGL-------------------------- 1136 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 P F G + LYDG TGE F + TVG IYMLKL Sbjct: 1137 --------PKF--------------------GHTYLYDGGTGERFTQAATVGVIYMLKLG 1168 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA+ +L+E+LT+KSD Sbjct: 1169 HMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASNILREILTVKSD 1228 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DV+GR + YE+I G E G PESFNVL+ E+Q LGL + LE Sbjct: 1229 DVIGRAKTYEAIAKGESMPEPGIPESFNVLLHELQGLGLDVRLEE 1273 >gi|223936435|ref|ZP_03628347.1| DNA-directed RNA polymerase, beta subunit [bacterium Ellin514] gi|223894953|gb|EEF61402.1| DNA-directed RNA polymerase, beta subunit [bacterium Ellin514] Length = 1282 Score = 1283 bits (3319), Expect = 0.0, Method: Composition-based stats. Identities = 601/1373 (43%), Positives = 828/1373 (60%), Gaps = 144/1373 (10%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R FGK EII P+LIE+Q SY FL +AP +R N GLQA F VFPI ++ Sbjct: 17 RVTERINFGKIKEIIAPPNLIELQTNSYKEFLQAEVAPSKRKNLGLQAVFTEVFPIESYD 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 G +L+F SYE PK D +CL LT+ PL +T L + Sbjct: 77 GKCVLDFHSYEIGEPKLDWLECLREGLTFGAPLYVTFLLKEEKGTKEEK----------- 125 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 ++MG+LPLMT GTFVI G +R++VSQLHRSPG+ F+ +GK L++ RIIPD+G Sbjct: 126 VFMGELPLMTPQGTFVINGAERVIVSQLHRSPGLAFEKS---IHPNGKELFSFRIIPDRG 182 Query: 190 LWMDIEFDSKDIIHVRID---RRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFW 245 W + +FD+ D+++V +D RRRK T+F ALG S+ +IL FY S + Sbjct: 183 SWYEAQFDTSDLLYVYLDRKKRRRKFLTTTFFRALGYGSDADILKLFYDIEELSVK---- 238 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCG 305 + + + +D D G V + + L+ ++K + E G+ + + Sbjct: 239 --EAEKLEDLQNKVLIEDALDADKGIVVARAFEPLSKAVVKQISEVGINKIKV------- 289 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 V+ + E + + D Sbjct: 290 -------VDTTSDEGIV------------------------------------IKCMKKD 306 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 K+ +AL DIYR +RPGD T + A ++ LFFD+ +YDL VGR K+N +L + Sbjct: 307 PAKNEDEALKDIYRRLRPGDPPTAANARALIKRLFFDAKRYDLGRVGRYKINQKLGIK-G 365 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 D R + KED++A K L+ L+ G+GT+DDID+LG+RRVR+VGE+L NQ R+GL R ER Sbjct: 366 GDSRILTKEDLVAATKYLLRLKKGEGTLDDIDHLGSRRVRTVGELLANQCRVGLARTERL 425 Query: 486 IKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 +KER++ D ++S+ PQ LIN K + + + +FF SQLSQ + +N L+ +TH RRLSA Sbjct: 426 VKERMTLFDQGMESMTPQKLINPKALSAVIRDFFGRSQLSQFMDQINPLAELTHKRRLSA 485 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVHP+HYGRICP ET EG NIGL++SL +FAR+N +GF+ETPYR Sbjct: 486 LGPGGLSRDRAGFEVRDVHPSHYGRICPVETPEGPNIGLIASLATFARINDFGFLETPYR 545 Query: 604 KVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 KV +G+V+N + YL+A EE +AQAN+ +DE G F E V CR G+ + V ++D+ Sbjct: 546 KVENGRVSNHIDYLTADREEAFTVAQANAVIDEKGHFLTERVMCRAKGDFVDVEPARVDY 605 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVPLL +AP V TG+E VA+ S Sbjct: 606 MDVSPKQLVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLITDAPLVATGLEDRVARDS 665 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSV-------EGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A I A+ G V V +++I + + +GV +Y++ KF RSN TC+ Sbjct: 666 RAVIAAEEGGKVASVIGNQVIITADGKLPETKKKIKHSPENGVYVYQIRKFMRSNAATCI 725 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQ+ LV GD V++ +IADGP T G+LALGRN+L AFMPW+GYNFED++LISER+V + Sbjct: 726 NQKILVNKGDTVKKGQVIADGPCTQGGELALGRNVLCAFMPWNGYNFEDAILISERIVKD 785 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D+FTSIHI+EFEV ARDTKLGPEEITRDIPN+ +E LKN+ G+I VGAEV PGDILVG Sbjct: 786 DIFTSIHIDEFEVGARDTKLGPEEITRDIPNLGDEALKNLGPDGVIRVGAEVKPGDILVG 845 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 KITPK E+ + PEE+LLRAIFGEKA DV+DTSL+VPSG G V+DV++ + +++ R Sbjct: 846 KITPKSETELAPEERLLRAIFGEKAADVKDTSLKVPSGTYGIVMDVKVSAKKEAEQSMRV 905 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL------SS 1010 + E+ Q + + + + L + L IL G+ + ++ + Sbjct: 906 STEEKRQSKEVEEEYKKKMDELREQLTEALSNILLGEKIPLDVVNSETGEIIIPANRKIT 965 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 + + + + + ++ + + ++ L+ ++ ++E+ + GD + G+ Sbjct: 966 KTLLRKLATVYDRIEIDPSPIRNKINEIIGSFKKKFDDLQMQYDEELERAESGDGVDTGI 1025 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 ++ VKV++A KR + GDKMAGRHGNKG+V++I+ EDMPFL +GTPVDIVLNPLGVPSR Sbjct: 1026 IKSVKVYIASKRKLSVGDKMAGRHGNKGVVAKIVAEEDMPFLDNGTPVDIVLNPLGVPSR 1085 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MNVGQ+ ETHLGWA LG K + + D DI Sbjct: 1086 MNVGQVLETHLGWAAKLLGLKFATPVFDGIKEKDIRGYLKEAGLPEHAK----------- 1134 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 T + DG TG+ FD+ + Sbjct: 1135 -----------------TKLIDG--------------------------RTGQVFDQEIV 1151 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VGYIYM+KL H+V+DK++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1152 VGYIYMMKLGHLVADKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWAMEAYGAAYT 1211 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 LQE+LT+KSDDV GRTR+YESIV G+++ E G PESFNVLVKEMQ+LGL + + Sbjct: 1212 LQELLTVKSDDVQGRTRIYESIVKGDNSLEAGVPESFNVLVKEMQSLGLDVKV 1264 >gi|225164279|ref|ZP_03726550.1| DNA-directed RNA polymerase, beta subunit [Opitutaceae bacterium TAV2] gi|224801121|gb|EEG19446.1| DNA-directed RNA polymerase, beta subunit [Opitutaceae bacterium TAV2] Length = 1267 Score = 1282 bits (3318), Expect = 0.0, Method: Composition-based stats. Identities = 612/1376 (44%), Positives = 844/1376 (61%), Gaps = 147/1376 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R FGK E+I P+LIE+Q SY FL + +R +GL+A F+ VFPI ++ G Sbjct: 8 ERLNFGKLREVIQPPNLIEIQITSYLDFLQKGVPDKQRKPQGLEAVFREVFPIESYDGRL 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE+VSY PK +C+ +T++VPL + LRL + IK++ IYM Sbjct: 68 NLEYVSYTLGEPKSSEIECIREGITFSVPLYVKLRL-----------REEDFIKDEEIYM 116 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++P++T+ G+F+I G +R+VVSQLHRSPG+ F+ D+ +GK L+A RIIPD+G W+ Sbjct: 117 GEIPMVTERGSFIINGAERVVVSQLHRSPGLCFEKDR---HTNGKELFAFRIIPDRGTWL 173 Query: 193 DIEFDSKDIIHVRIDRRR---KVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 +++FD D+++V +DRRR K +T+ ALG +IL FY Sbjct: 174 EVQFDINDLLYVYLDRRRRRRKFLITTLFRALGYSDNTKILELFYN-------------- 219 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + DI + + + + L Sbjct: 220 ---------------VQDIKVSKLL-------------------------EMENVSTLAF 239 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 ED+++ G + A + + ++ + ++ + ++ D+ + I L D + Sbjct: 240 VEDVIDAHKGVVLARALEPLTKQIVRSFEKHDVTSLRVI--DTAIDEGAIVRALKKDPTR 297 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 + ++AL +IY+ +RPG+ T + A+++ LFFD +YDL VGR K+N +LNLDT + Sbjct: 298 NEEEALKEIYKRLRPGEPPTTANAKALLKRLFFDPKRYDLGAVGRYKINQKLNLDTSLEE 357 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 R + EDII K LV LR G+G +DDID+LG+RRVR+VGE+L N+ R GL R ER ++E Sbjct: 358 RIVNSEDIILSTKYLVKLRQGQGVVDDIDHLGSRRVRTVGELLANECRKGLARTERLVRE 417 Query: 489 RISSVDI--DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 R++ D DS+ P LIN K + + + +FF SQLSQ + +N L+ +TH RRLSALG Sbjct: 418 RMTMYDQSVDSITPNKLINPKALTTVIRDFFARSQLSQFMDQINPLAEVTHKRRLSALGP 477 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG+ R RAG E+RDVHP+HYGRICP ET EG NIGL++SL+++A VN +GFIETPYR V Sbjct: 478 GGLNRERAGFEVRDVHPSHYGRICPIETPEGPNIGLINSLSTYAHVNMFGFIETPYRIVK 537 Query: 607 DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 DG+VT+ + YL+A +EE + IAQAN+ +D+ G F V R GE + V ++ ++D Sbjct: 538 DGRVTDKIEYLTANQEEAKIIAQANAEIDDKGHFVG-KVTVRQDGEFLEVDASEVHYMDV 596 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 SPKQV+SIAA +IPFLE+DD+NR LMG NMQRQ VPLL+A++P+VGTG+E VA+ S Sbjct: 597 SPKQVISIAAGMIPFLEHDDANRALMGANMQRQGVPLLQAQSPYVGTGIEERVARDSKIV 656 Query: 727 IVAKRAGIVEQVDAIRIVIRSV--------EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA+ AG+V VDA RIV+ + + +GV IY L K+ RSN +TC NQ Sbjct: 657 QVAEEAGLVALVDAKRIVVTPDGQLPKNFDKNPKNDPKNGVRIYELRKYMRSNASTCFNQ 716 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 +P+VK G V+ DIIADGPST+ G++ALGRN+LVAFMPW+GYNFED++LISE+++ ED+ Sbjct: 717 KPIVKKGQPVKIGDIIADGPSTEKGEMALGRNVLVAFMPWNGYNFEDAILISEKVLKEDI 776 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHI EFEV ARDTKLGPEEITRDIPNV EE LKN+D G+I VGAEV PGDILVGKI Sbjct: 777 FTSIHIHEFEVTARDTKLGPEEITRDIPNVGEEALKNLDHNGVIRVGAEVKPGDILVGKI 836 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPK E+ + PEEKLLRAIFGEKA DV+DTSL VPSG SG V+DV++ +R + S S Sbjct: 837 TPKSETELAPEEKLLRAIFGEKAADVKDTSLIVPSGESGIVMDVKVSSRIDNQAEKLSPS 896 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSD 1011 R Q + + + + L ++ L IL G+ +G + ++ Sbjct: 897 DRRRQTKQIQEEYKTQMDKLRESLTESLSNILLGEKIPLDVVNGANGEIIIPANRKITKT 956 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 L+ + + V+ + + +++ LE + K+ ++ G+D G + Sbjct: 957 LLRKLAAVS-KHIEIDPSPVRIKIMEIIGSFQSKFDELETDRERKVSSVESGEDNGNGAI 1015 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 + VKV++A K+ ++ GDKMAGRHGNKG+V++I+P EDMPFL DGTP+ I LNPLGVPSRM Sbjct: 1016 KQVKVYIATKQKLEVGDKMAGRHGNKGVVAKIVPEEDMPFLPDGTPIQICLNPLGVPSRM 1075 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 NVGQ+ ETHLGWAC LG K+ + + D I Sbjct: 1076 NVGQVLETHLGWACSKLGIKVATPVFDGIPEKKIREYLKDA------------------- 1116 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 G+PV SG+S LYDG TGE D+ V V Sbjct: 1117 -----------GLPV------------------------SGKSPLYDGRTGEKIDQEVVV 1141 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GYIYM+KLNH+VS K++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ L Sbjct: 1142 GYIYMMKLNHLVSHKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWALEAYGAAHTL 1201 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 QE+LT+KSDDV GRT++YES+V G++T GTPESFNVL+KE+Q+LGL I L Sbjct: 1202 QELLTVKSDDVQGRTKIYESLVKGDNTLIAGTPESFNVLIKEIQSLGLDIKLNKRD 1257 >gi|212550363|ref|YP_002308680.1| DNA-directed RNA polymerase subunit beta [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548601|dbj|BAG83269.1| DNA-directed RNA polymerase beta subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 1268 Score = 1280 bits (3313), Expect = 0.0, Method: Composition-based stats. Identities = 571/1370 (41%), Positives = 808/1370 (58%), Gaps = 117/1370 (8%) Query: 9 GLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF 68 R FG ++ PD +EVQ S+ FL ++ ++R NEGL K FPIT Sbjct: 2 KKNDQRISFGSIKRPVEYPDFLEVQLKSFQDFLQLDTPLEKRKNEGLYKICKENFPITDI 61 Query: 69 SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 + +L+F+ Y D P++ +C+ + LTY+VPLK L+L D D I Q Sbjct: 62 RNSFVLDFLDYYIDSPRYSFKECIEKGLTYSVPLKARLKLYCTDSDHEDFDTVI-----Q 116 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 +Y+G +P MT+ GTFVI G +R+VVSQLHRS G+ F +G LY+ RIIP + Sbjct: 117 DVYLGTIPYMTEKGTFVINGAERVVVSQLHRSAGVFFGQSL---HSNGTKLYSARIIPTK 173 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ D ++++ IDRR+K+P+T+ L A+G + +IL F D Sbjct: 174 GSWIEFATDINNVMYAYIDRRKKLPITTLLRAIGFGRDKDILDIFDIAEEIDVSEDNLKK 233 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 + G+KL + +LK E V Sbjct: 234 VI---------------------------GRKLAARVLKVWVEDFVDEDT---------- 256 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDK 366 ++V+ E E+ I+ ++ E +++I + I + D ++++ A I NTL+ D Sbjct: 257 --GEVVSIERNEVVIDREMILQEIYIDKIIECGAKIILLHREDKNLSDYAIIYNTLLKDP 314 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 + +DA++ IYR +R D + A LFF + +YDL VGR ++N +LNL P Sbjct: 315 SNSEQDAVIYIYRQLRNMDPTDDISARETVQNLFFSNKRYDLGEVGRYRINKKLNLSLPI 374 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 DVR + KED+ IIK L++L N K +DDID+L NRRVR+VGE L NQ+ + L RM R + Sbjct: 375 DVRVLTKEDVTEIIKYLIELANSKADVDDIDHLSNRRVRTVGEQLSNQFGVALARMARIV 434 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 +ER++ D + P DLINAK V S + FF ++ LSQ + N L+ ITH RR+SALG Sbjct: 435 RERMNVRDNEVFTPIDLINAKTVSSVINTFFGTNALSQFMDQTNPLAEITHKRRMSALGP 494 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A+++ GF+ETPYRKV Sbjct: 495 GGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKISNMGFVETPYRKVS 554 Query: 607 DGKV---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 + KV + +VYL A EEE + IAQ ++ +++DG+F ++ + R + +V +++ Sbjct: 555 NSKVDNSSGGIVYLVAEEEEGKIIAQGDALVNDDGTFVDDRIKARKDADYPVVTPSEVEL 614 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SP Q+ SIAA+LIPFLE++D+NR LMG NM RQAVPLL +E P VGTG+E + S Sbjct: 615 MDVSPTQIASIAAALIPFLEHNDANRALMGSNMMRQAVPLLNSEVPIVGTGLEGRIISDS 674 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 I+++ AG V VD+ RI I+ E + S V Y + K++++NQNT ++ P Sbjct: 675 RTQIMSEGAGEVVFVDSTRIDIKYDRTEEEEFVSFESAVKTYAIPKYKKTNQNTSIDLHP 734 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK GD V R I+ +G +++ G+LALG+N+ VAFMPW GYNFED+++ISER+V ED+FT Sbjct: 735 IVKKGDRVERGQILTEGYASENGELALGKNLKVAFMPWKGYNFEDAIIISERVVREDIFT 794 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHI+E+ + R+TK G EE+T DIPNVSEE +N+DE GI+ +GA + PGDIL+GK+TP Sbjct: 795 SIHIDEYILDVRETKRGAEELTSDIPNVSEEATRNLDENGIVRLGARIEPGDILIGKVTP 854 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGES +PEEKLLRAIFGEKA DV+D SL+ ++G V++ +F+R K ++S Sbjct: 855 KGESDPSPEEKLLRAIFGEKAGDVKDVSLKASPSLNGIVIERNLFSRA--IKRDKSRQDS 912 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILC-----GQNAVSGPKGFKKSTVLSSDLISE 1015 + + L ++ + + L+ + +L+ ++ G G + K S + + Sbjct: 913 KSNLIQLNKEYEIKVNELESILVKKLLSLVKDEISQGVKDFMGIELISKGAKFSEGDLRK 972 Query: 1016 YPRSQW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + D + + +L Y L K K GD++P GVL++ Sbjct: 973 IDYTSVQISKWTADSRKNTMISNLIANYIKKYKQLSAELKRKEFNCAIGDELPSGVLQMA 1032 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV+VA KR +Q GDKMAGRHGNKGIVSRI+ EDMPFL+DGT +DIVLNPLGVPSRMN+G Sbjct: 1033 KVYVAKKRKLQVGDKMAGRHGNKGIVSRIVRDEDMPFLEDGTIIDIVLNPLGVPSRMNLG 1092 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVL 1194 QIFET LGW+ LG + + I D + D+ Sbjct: 1093 QIFETVLGWSGEKLGVRFATPIFDGASLKDLDKWTD------------------------ 1128 Query: 1195 RVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYI 1254 K+G+P G++ LYDG TGE FD+P TVG I Sbjct: 1129 ------KAGLP------------------------RYGKTYLYDGGTGERFDQPATVGVI 1158 Query: 1255 YMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEM 1314 YMLKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA+++LQE+ Sbjct: 1159 YMLKLGHMVDDKMHARSVGPYSLITQQPLGGKAQVGGQRFGEMEVWALEAFGASFILQEI 1218 Query: 1315 LTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 LTIKSDDV+GR YE+IV GN + G PES NVL+ EM+ L L+I LE Sbjct: 1219 LTIKSDDVIGRAMTYEAIVKGNPIPDPGIPESLNVLLYEMRGLALNIILE 1268 >gi|34112959|gb|AAQ62404.1| DNA-directed RNA polymerase beta subunit (RpoB) [uncultured marine gamma proteobacterium EBAC31A08] Length = 1218 Score = 1280 bits (3312), Expect = 0.0, Method: Composition-based stats. Identities = 618/1225 (50%), Positives = 863/1225 (70%), Gaps = 16/1225 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG +++D+P+LIE Q SY FL ++APD R +GL+ F+S+ Sbjct: 1 MSYSYTEKKRIRKNFGTFTKVMDLPNLIETQTKSYSEFLQADVAPDARKKQGLEDVFQSL 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + SG A LE+VSYE +DV +CL + L+Y+ PL+I ++L+++D T K + Sbjct: 61 FPIKSVSGNAALEYVSYELGKNTYDVQECLVQGLSYSAPLRIKVKLVLYDR--ETNFKEV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKE ++MG++PLMT D +FV+ G +R+VV+QLHRSPG+ +DHDKG+ SGK+LY+ Sbjct: 119 KDIKEGEVFMGEVPLMTSDASFVVNGTERVVVAQLHRSPGVFYDHDKGKTHSSGKVLYSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KDI+ RIDRRRK+P T L AL M +EEILS FY + V+S Sbjct: 179 RIIPYRGSWLDFEFDPKDILFSRIDRRRKIPATIMLRALDMGTEEILSEFYDEDVFSLEK 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 D L L G + + + +E+GK++T+ +K L V + + + Sbjct: 239 DSVKLALIPERL-RGETLPVDIKVK--SKVYVEAGKRITARHIKELSNANVSEITLAEEF 295 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +++DI N ETGE+ A ID + LE + + + DI L+++ ++ YI NTL Sbjct: 296 LIGKVLSKDIFNKETGEVLYSANTEIDNEVLEALKENNVSDITCLFINELDKGPYISNTL 355 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D +R +AL++IYR+MRPG+ T AE++FN LFF+ ++YDLS VGR+K N RL L Sbjct: 356 RADPTSNRLEALVEIYRMMRPGEPPTKDSAETLFNNLFFNEERYDLSEVGRMKFNRRLKL 415 Query: 423 D-TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D ++ + KEDII ++K +V++R+G +DDID+LGNRRVRSVGEM NQ+R+GL+R Sbjct: 416 DSKKENDNILDKEDIIEVMKGIVNIRDGHDIVDDIDHLGNRRVRSVGEMTANQFRVGLIR 475 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER+++ER+S + D + PQDLINAKPV +A+ EFF SSQLSQ + N LS ITH RR+ Sbjct: 476 VERAVRERLSMAEADELGPQDLINAKPVTAAIKEFFGSSQLSQFMDQNNPLSEITHKRRV 535 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S S++R N YGFIETP Sbjct: 536 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSFASYSRTNQYGFIETP 595 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YRKV +G VT++++YLSA++E IAQAN +LD++ F ++LV R A E L+ +++ Sbjct: 596 YRKVINGTVTDEIMYLSAIDEAEHVIAQANVTLDKNNKFVDDLVAVRHASEFELMSSDRV 655 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D +D SP+QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP+L+AE P VGTG+ESVVA+ Sbjct: 656 DLMDVSPQQVVSIAASLIPFLEHDDANRALMGSNMQRQAVPVLRAEKPLVGTGLESVVAR 715 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG IVAK +G+VE VDA RIV+R + S S D+Y L+K+ RSNQNTC+NQRP+ Sbjct: 716 DSGVCIVAKNSGVVENVDASRIVVRVTDK---KSKSASDVYNLVKYTRSNQNTCINQRPI 772 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V+VGD V+ D++ADGPS D G+LALG+N+ +AFMPW+GYNFEDS+LISE++ ED FTS Sbjct: 773 VRVGDVVKSGDVLADGPSVDNGELALGQNIRIAFMPWNGYNFEDSILISEKVAREDRFTS 832 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +D+CGI+ VGAEV PGDILVGKITPK Sbjct: 833 IHIQEIVCVARDTKLGSEEITADIPNVGEGSLNKLDDCGIVYVGAEVEPGDILVGKITPK 892 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ ++PEEKLLRAIFGEKA DV+DTS R S GTV++V +F R G++K+ER+ ++E+ Sbjct: 893 GETQLSPEEKLLRAIFGEKASDVKDTSQR--SSAKGTVINVEVFTRDGVEKDERTQAIEQ 950 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 + ++ +D DDE ++++ +RL ++L G+ A+ G G KK LS + + E + Sbjct: 951 DHLDKSKKDADDEAFVVEQATKTRLCDLLKGKKAIKG-NGIKKGETLSLERLEELDLNDL 1009 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + + +E + Y++ ++ RF+ K KI G D+ PGV+++VKV++A+K Sbjct: 1010 FSIRTDTDTINDVIEDTEKSYKSYAKDIKARFEEKKAKIIRGHDLAPGVIKIVKVYLAIK 1069 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S I+P EDMP+ KDG PVDIVLNPLGVPSRMNVGQI ETH+ Sbjct: 1070 RRIQPGDKMAGRHGNKGVISEIMPVEDMPYDKDGHPVDIVLNPLGVPSRMNVGQILETHM 1129 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGSHTEKISDYDDDSVLRVAEQW 1200 G A G+G+KI ++ K N + L+++L+K+ ++ E I+ +++ ++ +A Sbjct: 1130 GCAAKGIGQKIDLML---KENAKPAELKTYLDKLYNTNAANKEDINSFNNTEIMELAHNL 1186 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRM 1225 K G+P++TPVFDGA E + +L++ Sbjct: 1187 KDGLPIATPVFDGAKESEVKDLLKL 1211 >gi|326799811|ref|YP_004317630.1| DNA-directed RNA polymerase subunit beta [Sphingobacterium sp. 21] gi|326550575|gb|ADZ78960.1| DNA-directed RNA polymerase subunit beta [Sphingobacterium sp. 21] Length = 1269 Score = 1280 bits (3311), Expect = 0.0, Method: Composition-based stats. Identities = 577/1378 (41%), Positives = 807/1378 (58%), Gaps = 123/1378 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA + N R F + +ID PD ++VQ S+ F + D R EGL F Sbjct: 1 MANKDIRNE----RVNFATSKRVIDYPDFLDVQLQSFKEFFQLETTSDNRHQEGLFKVFS 56 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 FPI+ +LEF+ Y DPP++D+ +C+ R LTY+VPLK LRL D + Sbjct: 57 ENFPISDSRNIFVLEFLDYFIDPPRYDIQECIERGLTYSVPLKAKLRLSCNDEEHEDFET 116 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 + Q +Y+G +P MT GTFVI G +R++VSQLHRSPG+ F + +G LY Sbjct: 117 IV-----QDVYLGTIPYMTPKGTFVINGAERVIVSQLHRSPGVFFGQSR---HTNGTKLY 168 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 + R+IP +G W++ D ++++ IDR++K PVT+ L A+G DS+ +IL F Sbjct: 169 SARVIPFKGSWIEFATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFELADEVK 228 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 ++++ G+KL + +LK E V Sbjct: 229 VSKSGL-------------------------KKLV--GRKLAARVLKRWVEDFVDEDT-- 259 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY-- 357 ++V+ + EI +E ++++ ++ I + ++ I + DS NN Y Sbjct: 260 ----------GEVVSIDRNEIILERETILEDDHIDMIIDAGVKSIILTKEDSSNNADYSI 309 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 I NTL D + K+A+ IYR +R + A + LFF +YDL VGR ++N Sbjct: 310 IYNTLQKDTSNSEKEAVEHIYRQLRNAEPPDEETARGIIERLFFSDKRYDLGDVGRYRIN 369 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +L LDTPD+++ + K+DIIAI+K L++L N K +DDID+L NRRVR+VGE L Q+ + Sbjct: 370 RKLQLDTPDEIKVLTKQDIIAIVKYLINLINSKAEVDDIDHLSNRRVRTVGEQLYAQFGV 429 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL RM R+I+ER++ D + P DLINA+ + S + FF ++QLSQ + N L+ ITH Sbjct: 430 GLSRMARTIRERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITH 489 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG++R RAG E+RDVH THYGR+C ET EG NIGL+SSL A++N GF Sbjct: 490 KRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKINNLGF 549 Query: 598 IETPYRKVCDGKVTND--VVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 IETPYRKV DG+V + VVYLSA +E+ + IAQAN+ DE G+FT V R G+ + Sbjct: 550 IETPYRKVQDGRVVVEEPVVYLSAEDEDGKTIAQANAEYDEKGNFTTPKVKARFEGDFPI 609 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 + E++D +D +P Q+ SIAASLIPFLE+DD+NR LMG NMQRQAVPLL+ +AP VGTG+ Sbjct: 610 IEPERLDLMDIAPNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRPQAPIVGTGL 669 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQ 772 E VA S I A+ G+VE VDA I IR + L + YRL+KF+++NQ Sbjct: 670 EGRVASDSRTLINAEGNGVVEYVDANEIKIRYDRNEDEKLVSFDDDIKTYRLIKFKKTNQ 729 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 +TC+N +P+V+ G V ++ +G +T+ G+LALGRN+ VAFMPW GYNFED+++ISER Sbjct: 730 STCINLKPIVRKGQRVVEGQVLCEGYATENGELALGRNLKVAFMPWQGYNFEDAIVISER 789 Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +VS+D+FTS+HIEEFE+ RDTK G EE+T DIPNVSEE K++DE GII +GAEV GD Sbjct: 790 VVSQDIFTSLHIEEFELEVRDTKRGEEELTSDIPNVSEEATKDLDENGIIRIGAEVREGD 849 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDK 952 IL+GKITPKGES +PEEKLLRAIFG+KA DV+D SL+ P + G V+D ++F+R Sbjct: 850 ILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKTPPSIRGVVIDTKLFSRAKKA- 908 Query: 953 NERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-----KSTV 1007 E+ +E L + + L + +L I+ G+ + +K K Sbjct: 909 ---DKKEEKAALERLDLNHERAVRQLRERLIDKLFAIVNGKTSQGVYNVYKELLIPKGAK 965 Query: 1008 LSSDLISEYPRSQWW-QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDM 1066 + +++E + D+ V+ Y + ++ I GD++ Sbjct: 966 FTQKMLAELDFANINPSKWTTDDDKNELVKQALHFYNIKLNEELGAYRRDKFAITVGDEL 1025 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 P G++++ KV+VA KR ++ GDKMAGRHGNKGIV+RI+ EDMPFL+DGTPVDIVLNPLG Sbjct: 1026 PSGIVQMAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLNPLG 1085 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQI+ET LGWA LG K + I D + ++ + ++ Sbjct: 1086 VPSRMNLGQIYETVLGWAGQKLGVKFATPIFDGASTEEVEEWVAKAGLPASGRTYLYNGL 1145 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + FD + ML+ Sbjct: 1146 TGER--------------------FDQPTTVGVIYMLK---------------------- 1163 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 L HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+G Sbjct: 1164 ------------LGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFG 1211 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 A+ +LQE+LT+KSDDV+GR + YE+IV G++ PESFNVLV E++ LGL I LE Sbjct: 1212 ASNILQEILTVKSDDVIGRAKTYEAIVKGDNLPTPSVPESFNVLVHELRGLGLDITLE 1269 >gi|327399530|ref|YP_004340399.1| DNA-directed RNA polymerase subunit beta [Hippea maritima DSM 10411] gi|327182159|gb|AEA34340.1| DNA-directed RNA polymerase subunit beta [Hippea maritima DSM 10411] Length = 1344 Score = 1279 bits (3310), Expect = 0.0, Method: Composition-based stats. Identities = 623/1373 (45%), Positives = 872/1373 (63%), Gaps = 52/1373 (3%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K ++++IPDL+ + SY FL N + + L A KS+FPI G Sbjct: 10 RMRVNFSKAKKVLEIPDLLRLNINSYQTFLEKN----SKKEKNLDNALKSIFPIDDVHGR 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSI 130 LE V ++ PPKFD D+C + ++Y L I +RL + VDE TG K ++DIKEQ I Sbjct: 66 LRLELVDWDITPPKFDPDECKVKGISYTGNLIIKVRLTQWTVDEQTGEKIGVEDIKEQEI 125 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 Y+G++PL+T+ G+F+I G++R++V QLHRSPG+ F + GK LY +IIP++G Sbjct: 126 YVGEIPLITESGSFIINGVERVIVGQLHRSPGVIFKKTGD---IGGKGLYYAQIIPERGS 182 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 W++ E + ++++ RIDR++K P T L A+GM +IL FY + LS Sbjct: 183 WVEFETEPREVLSTRIDRKKKFPATILLQAMGMSEADILREFYEVVRVKIENGQIFAQLS 242 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 + ++G KV + GE VI+ G+KLT+ L + LK+ GV+++ I L Y AE Sbjct: 243 --ESIIGFKVDKDVEI--DGEVVIKEGRKLTTRLFRQLKDVGVEYVPIRESELYNKYSAE 298 Query: 311 DIV--NGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI---------- 358 + + E ++ + G I ++ L + ++ +LY + Sbjct: 299 IVEAEDEEGVDVVLGIGTKITKEKLGFL-KKFDKEFNVLYSKFDDYLILNTVIASREVLR 357 Query: 359 -RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 R + D A + I+ ++RPG+ ++ A+ F LFF+ ++YD+S GR+++N Sbjct: 358 KRKVALPDSIAIDDLARVFIHTLLRPGEHTSIEDAKKFFENLFFNPERYDVSQEGRIRLN 417 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 N++ P+DVR + +ED + +IK +V L N + DD+D+L NR+V VG+ L + R Sbjct: 418 ETFNINVPEDVRTLTREDFVGLIKHVVLLENDQVIPDDVDSLSNRKVNLVGDQLYREIRN 477 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GLLRM+R IK+++ D +++MP D+INAKPV A+ +FF + QLSQ + N LS I+H Sbjct: 478 GLLRMQRLIKDKMVMSDAENIMPYDVINAKPVAVAIKDFFSTGQLSQFLDQTNILSEISH 537 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL +A++N +GF Sbjct: 538 KRRLSALGSGGLTRERAGFEVRDVHPTHYGRICPIETPEGANIGLISSLAVYAKINEFGF 597 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 IETPYR V DG+VT++VVYLSA +E+ IAQA++ L+EDG+F E V R GE ++V Sbjct: 598 IETPYRIVKDGRVTDEVVYLSASKEKGHIIAQASAPLNEDGTFKNEYVSARKDGEFVVVK 657 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 RE +D +D S Q+VS+AA LIPFLE+DD+NR LMG NMQRQAVPL++ EAP VGTG+E Sbjct: 658 REDVDLMDISTNQIVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLIRPEAPLVGTGLEP 717 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VVAK S A+VAKR G V ++D + E + +D+Y L KF RSNQ+TC + Sbjct: 718 VVAKYSRYAVVAKRDGKVVRIDDKIYISCKTENGYE-----LDVYPLKKFIRSNQDTCFS 772 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 P+V VGDEV+ IIADGPS D G+LALG+N++VAF+ W GYN+ED + IS R+V ED Sbjct: 773 HNPIVDVGDEVKTGQIIADGPSMDKGELALGKNLVVAFVSWRGYNYEDGITISRRVVEED 832 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 ++TSIHI+EF + RDTK G EEIT DIPN S E L+N+D+ GI+ +GA V P D+LVGK Sbjct: 833 LYTSIHIKEFTLYVRDTKFGMEEITADIPNASSETLRNLDKNGIVRIGAYVKPNDVLVGK 892 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPK E+ +PEEKLLR+IFGEKA +V DTSLRVP SG VVDVRI +R G N R Sbjct: 893 VTPKAETHYSPEEKLLRSIFGEKATNVADTSLRVPPDTSGIVVDVRIMHRRGAKINPREK 952 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 + +Q E + ++ + +L + + + + +S + + + + Sbjct: 953 EIIEQQKEKINKELKHKLELLSKLRLDSIKDAII------------ESDIKTKEELEGLS 1000 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 + +D +++L Y+ + ++D I+ ++ D+PPGV+ VV V+ Sbjct: 1001 EKELVPLLPKDFD----IKALNRHYKEMEKSIKDYHTKLIKGVEKESDLPPGVISVVNVY 1056 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 VA KR + GDKM+GRHGNKG+VS+ILP +D+PFL+DGTPVDIVLNPLGVPSRMN+GQI Sbjct: 1057 VATKRKLSVGDKMSGRHGNKGVVSKILPVQDLPFLEDGTPVDIVLNPLGVPSRMNIGQIM 1116 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 ETHLGW GLGKKI L+ + + L+ FL+K+ + E I D+ V + A Sbjct: 1117 ETHLGWLSKGLGKKIDHLLKAGRKDI----LKDFLKKIYNSEKAGELIESLSDEEVEKYA 1172 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 ++W GV + PVF+GA E+ + + + +S +YDG+TGE F PVTVG +Y+L Sbjct: 1173 KEWVRGVHFANPVFEGAKEKDLEYLEGLLGFKRL-KSEVYDGITGEKFLEPVTVGVMYVL 1231 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL+H+V DKV+ARS G YSLVTQQPLGGK+N GGQR GEMEVW ++ YGAAY L EMLT+ Sbjct: 1232 KLHHLVDDKVHARSVGPYSLVTQQPLGGKANFGGQRFGEMEVWALEGYGAAYTLHEMLTV 1291 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 KSDDV GR YE+IV G G PESFNVLVKEMQAL L ++L + Sbjct: 1292 KSDDVDGRKLTYEAIVKGRPIPLGGVPESFNVLVKEMQALCLDVELLKDIRRK 1344 >gi|41017794|sp|Q9F3X8|RPOB_PORCN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|10637868|emb|CAC10563.1| DNA-dependent RNA polymerase subunit beta [Porphyromonas cangingivalis] Length = 1270 Score = 1279 bits (3309), Expect = 0.0, Method: Composition-based stats. Identities = 563/1363 (41%), Positives = 795/1363 (58%), Gaps = 119/1363 (8%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R F ++ D ++VQ S+ FL ++ P++R EGL F FPI Sbjct: 7 TQRVNFASIKNPMEYADFLDVQLKSFKDFLQLDTPPEKRKKEGLYKVFAENFPIHDTRNN 66 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 +LEF+ Y DPP++ +D+C+ R LTY VPLK ++L D + I Q +Y Sbjct: 67 FVLEFLDYYIDPPRYTLDECISRGLTYNVPLKAKMKLYCTDPEHEDFETVI-----QDVY 121 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +G +P MT+ GTF+I G +R+VVSQ+HRSPG+ F +G L++ RIIP +G W Sbjct: 122 LGPIPYMTESGTFIINGAERVVVSQMHRSPGVFFSES---VHPNGTKLFSARIIPFKGSW 178 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ D ++++ IDR++K+PVT+ L A+G +++ +IL+ F Sbjct: 179 IEFATDINNVMYAYIDRKKKLPVTTLLRAIGFETDKDILNLFGIAEEVKVSKSTLKKYY- 237 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 G+K+ + +L S E V Sbjct: 238 --------------------------GRKIAARVLNSWIEDLVDEET------------G 259 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY--IRNTLVTDKNK 368 ++V+ E ++ ++ +++ E ++++I S ++I I DS Y NTL D + Sbjct: 260 EVVSMERYDVIVDRDELLTEDNVDQIIESGAKNILITKDDSELGLDYSVTTNTLQKDPSN 319 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 K+A+ IY+ +R D + A + N LFF +YDL VGR ++N +L ++ ++ Sbjct: 320 SEKEAVYHIYKQLRNQDPVDDASAREVINSLFFSEKRYDLGDVGRYRINKKLGINIDEET 379 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + + EDI AII LV+L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+++E Sbjct: 380 KVLTTEDITAIIAHLVELMNSKQVVDDIDHLSNRRVRTVGEQLYNQFGIGLARMARTVRE 439 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R++ D + P DLINAK + S V FF ++ LSQ + N L+ ITH RRLS+LG GG Sbjct: 440 RMNVRDNEVFTPIDLINAKTISSVVNSFFGTNALSQFMDRTNPLAEITHKRRLSSLGPGG 499 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFI TPYRKV DG Sbjct: 500 LSRDRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINDLGFISTPYRKVVDG 559 Query: 609 KV---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 KV N V Y +A E+++ +AQ N+ LDE+G F ++ V+ R + +V +ID +D Sbjct: 560 KVDFSENGVEYYTAEAEDDKTVAQGNAPLDENGKFIKDAVYARYGSDFPVVSPSEIDLMD 619 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 SP Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPL+ ++AP VGTG+E + S Sbjct: 620 VSPIQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLIHSDAPIVGTGVEQKLVHDSRT 679 Query: 726 AIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 IVA+ AG VE VDA I IR + + IY L KF+++NQ+T ++ RP+ Sbjct: 680 QIVAEGAGTVEFVDASVIKIRYDRSEDDTFVSFEDNLKIYNLPKFRKTNQSTTIDLRPIC 739 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD V + DI+ +G ST+ G+LALGRN+ VA+MPW GYN+ED+++++ERMV ED+FTS+ Sbjct: 740 RKGDRVEKGDILTEGYSTENGELALGRNVQVAYMPWKGYNYEDAIVLNERMVREDIFTSV 799 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 H++E+ + R+TK G EE+T DIPNVSEE K++D+ GII VGA V+PGDIL+GKITPKG Sbjct: 800 HVDEYILEVRETKRGLEELTSDIPNVSEEATKDLDDRGIIRVGARVHPGDILIGKITPKG 859 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ES TPEEKLL AIFG+KA DV+D SL+ +SG V+ +F++ K + RE Sbjct: 860 ESDPTPEEKLLHAIFGDKAGDVKDASLKANPSLSGVVIKTHLFSKAMHSKKD--KGGVRE 917 Query: 963 QIELLARDKDDEQVILDRNIYSRL-----MEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 ++ L + +++ L + +L ++ G + K L+ + S+ Sbjct: 918 IVKKLDEEMEEKLAELRELMLKKLIQLTDNKLSNGIRNFEDTEIVPKGVKLTPAVCSKIE 977 Query: 1018 RSQWWQF-AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 + F DE V L Y +E ++ K GD++P G++++ KV Sbjct: 978 FGEVAIFNWTGDEHTDELVAKLISNYLRKAKEIESEYRRKKFDATIGDELPNGIIQIAKV 1037 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 +A KR IQ GDKMAGRHGNKGIVS+I+ EDMPF++DGTP+D+ LNPLGVPSRMN+GQI Sbjct: 1038 LIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFMEDGTPMDLCLNPLGVPSRMNLGQI 1097 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 FE L K + I D + D+ Sbjct: 1098 FE-LSSMGSRRLDVKFATPIFDGASLDDLDQWTD-------------------------- 1130 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 K+G+P G++ LYDG TGE FD+P TVG Y Sbjct: 1131 ----KAGIP------------------------RYGKTYLYDGGTGEQFDQPATVGVTYF 1162 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 LKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGAA+VLQEMLT Sbjct: 1163 LKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHVLQEMLT 1222 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGL 1359 IKSDDVVGR++ YE+IV G G PES NVL+ E++ LGL Sbjct: 1223 IKSDDVVGRSKAYEAIVKGAPMPTPGIPESLNVLLHELKGLGL 1265 >gi|262340957|ref|YP_003283812.1| DNA-directed RNA polymerase subunit beta [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272294|gb|ACY40202.1| DNA-directed RNA polymerase subunit beta [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 1273 Score = 1278 bits (3306), Expect = 0.0, Method: Composition-based stats. Identities = 565/1372 (41%), Positives = 800/1372 (58%), Gaps = 119/1372 (8%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 R F + ++ PD +++Q S+ F ++ P+ R NEGL AF FPI+ Sbjct: 7 TEKISERITFSSVAKQVEYPDFLDIQIKSFKEFFQLDTKPENRKNEGLFKAFTENFPISD 66 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 + +LEF Y D P++ +++C+ R LTY+VPLK L+L D + + Sbjct: 67 ARNSFVLEFKGYSIDSPRYSIEECIERGLTYSVPLKAKLKLYCTDPEHEDF-----ETVY 121 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +Y+G P MT G+F+ G +R++VSQLHRSPG+ F +G LY+ RIIP Sbjct: 122 QDVYLGTCPYMTPSGSFIFNGAERVIVSQLHRSPGVFFGQSH---HANGTKLYSARIIPF 178 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWC 246 +G W++ D ++++ IDR++K+P+T+ L ++G + + +IL F + Sbjct: 179 KGSWIEFATDINNVMYAYIDRKKKLPMTTLLRSIGYERDKDILEIFDLAEEIKITDESKN 238 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 + VD DTGE Sbjct: 239 ILNRTLAARILRIWHEDFVDEDTGEV---------------------------------- 264 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTD 365 V+ E EI I+ ++ E+ ++ + + EI+ + + + + I NTL D Sbjct: 265 ------VSIEKNEILIDRDVLLKEEHIDLLKNHEIKTVLLHKEGGRKKDYSIIYNTLHKD 318 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 K+A+ IYR +R + A + + LFF +Y L VGR ++N RL L+ Sbjct: 319 PTNSEKEAVEYIYRQLRNTEPPDEETARGVIDKLFFSDTRYSLGPVGRYRLNKRLELNID 378 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 + + K+DIIAI+ L L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+ Sbjct: 379 PNHLVLTKKDIIAIVDHLNALFNSKREVDDIDHLSNRRVRTVGEQLYTQFSIGLARMART 438 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 I+ER++ D + MP DLINAK + S + FF ++QLSQ + N LS ITH RRLSALG Sbjct: 439 IRERMNVRDNEVFMPVDLINAKTLSSVINTFFGTNQLSQFMDQTNPLSEITHKRRLSALG 498 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG++R RAG E+RDV+ +HYGR+CP ET EG NIGL+SSL+ FA++N GF+ETPYR V Sbjct: 499 PGGLSRERAGFEVRDVNYSHYGRLCPIETPEGPNIGLISSLSVFAKINNMGFVETPYRTV 558 Query: 606 CDGKV--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 KV ++V YLSA EEE + IAQAN+ +D+ G+F + + R G+ +V ++D+ Sbjct: 559 FQKKVDLKSEVKYLSAEEEEGKIIAQANA-IDQYGNFLSDRIIAREDGDFPIVQSNQVDY 617 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 ID +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLLK +AP VGTG+E VA+ S Sbjct: 618 IDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLKPDAPIVGTGLEQQVARDS 677 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVE---GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 I AK+ GIVE +D+ +I++R + L V +Y L+KF+++NQNTC+N +P Sbjct: 678 RILINAKKNGIVEYIDSKKIIVRYDKTDKEALVSFDDDVQVYDLIKFRKTNQNTCINLKP 737 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK G + + I+ +G +T+ G+LALGRN+ AF+P +GYNFED++LISE++VSED FT Sbjct: 738 IVKKGMRIVKGQILCEGYATENGELALGRNLKAAFIPCNGYNFEDAVLISEKVVSEDWFT 797 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHI+E+ + RDTKLG EE+T DIPNVSEE K++DE GII VGAEV PGDIL+GKITP Sbjct: 798 SIHIDEYSLDVRDTKLGMEELTNDIPNVSEEATKDLDENGIIRVGAEVKPGDILIGKITP 857 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGES TPEEKLLRAIFG+KA +V+D SLR + G V+D ++F R K++++ + + Sbjct: 858 KGESDPTPEEKLLRAIFGDKAGNVKDASLRAEPSLFGVVIDTKLFIR--SIKDKQTRTQD 915 Query: 961 REQIELLARDKDDEQVILDRNIYS-----RLMEILCGQNAVSGPKGFKKSTVLSSDLISE 1015 + +IE L + + + + L + + + K + + + + Sbjct: 916 KIKIECLEKKYEKKFLDLRNLLIKIIFCFKWKLCNSSVFNEKNKEIIAKGSKFNIKKLEK 975 Query: 1016 YPRS--QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRV 1073 + D + + + Y+ + L K+K I GD++P G++++ Sbjct: 976 ISDYIGVFSNSWTDDPETNDLISEILHNYQIAVGDLTSILKHKKFSITVGDELPSGIIKM 1035 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 KV++A KR ++ GDKMAGRHGNKG+V+RIL EDMPFL+DG+PVDIVLNPLGVPSRMN+ Sbjct: 1036 AKVYIAKKRKLKVGDKMAGRHGNKGVVARILRVEDMPFLEDGSPVDIVLNPLGVPSRMNI 1095 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQI+ET LGWA L +K + I D I + Sbjct: 1096 GQIYETVLGWAGQKLNRKFSTPIFDGATIDQICEYTDKAKI------------------- 1136 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 P F G + L+DG TGE FD+P TVG Sbjct: 1137 ---------------PRF--------------------GTTYLFDGGTGEKFDQPATVGV 1161 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA+ +L+E Sbjct: 1162 IYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASNILRE 1221 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 +LT+KSDDVVGR + YE+IV G E PESFNVL E++ LGL I LE Sbjct: 1222 ILTVKSDDVVGRAKTYEAIVKGEPMPEPNNPESFNVLCYELKGLGLDIRLEE 1273 >gi|189499299|ref|YP_001958769.1| DNA-directed RNA polymerase subunit beta [Chlorobium phaeobacteroides BS1] gi|189494740|gb|ACE03288.1| DNA-directed RNA polymerase, beta subunit [Chlorobium phaeobacteroides BS1] Length = 1302 Score = 1277 bits (3305), Expect = 0.0, Method: Composition-based stats. Identities = 583/1419 (41%), Positives = 831/1419 (58%), Gaps = 181/1419 (12%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 + F K I++ PDL++VQ S+ F+ ++ +R ++GL+ +S FPI Sbjct: 5 DKTQKKCI--AFSKIQSIVNPPDLLQVQLDSFKRFIQDSVPLAKRKDQGLEKVLRSAFPI 62 Query: 66 TAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDI 125 T G +LE++SY FD PK+ V++C+ R LTY V LK+ L+L D + K Sbjct: 63 TDTRGLYLLEYISYTFDKPKYTVEECIERGLTYDVSLKVKLKLSYKDEPDEQDWKET--- 119 Query: 126 KEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRII 185 +Q +Y+G +P MT GTF++ G +R+VV+QLHRSPG+ F +GK +Y+ +I+ Sbjct: 120 IQQEVYLGRIPYMTDRGTFIVNGAERVVVAQLHRSPGVVFSE---AIHPNGKKMYSAKIV 176 Query: 186 PDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDF 244 P +G W++ + D + I+V ID+++ V++ L A+G +E ILS F Sbjct: 177 PTRGSWIEFQTDINNQIYVYIDQKKNFLVSALLRAIGFTKDEDILSLF------------ 224 Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLC 304 L++ E +++ KK + L Sbjct: 225 ------------------DLIE----EVPVKANKK---------------------EYLI 241 Query: 305 GLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN---AYIRNT 361 G +A DI++ +TGE+ + A I E+ L++I + + + I+ + + + NT Sbjct: 242 GKNLASDIIDMQTGEV-VSARTAITEEILDQITAAGSKTVRIMKPGTGEKGLDKSVVTNT 300 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 ++ D + ++AL +Y +R + A S FF+ KYDL VGR ++N +L Sbjct: 301 ILNDSSATEEEALEIVYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRINKKLG 360 Query: 422 LD------------------------------------TPDDVRHIRKEDIIAIIKILVD 445 + DD+ + DIIA+I L+ Sbjct: 361 KEHEAFKEFLSGQPELKALSDSIYEKILQTIQSYSDEPISDDIMVLTHYDIIAVINYLIK 420 Query: 446 LRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLIN 505 L NG+ +DD+D+L NRRVR+VGE L Q+ +GL RM ++++E+++S D D + P DLIN Sbjct: 421 LVNGQAEVDDVDHLANRRVRTVGEQLAAQFVIGLARMGKNVREKLNSRDTDKIAPADLIN 480 Query: 506 AKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTH 565 A+ V S V FF +SQLSQ + N L+ +T+ RR+SALG GG+ R RAG E+RDVH TH Sbjct: 481 ARTVSSVVSSFFATSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTH 540 Query: 566 YGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENR 625 YGR+CP ET EG NIGL+SSL+ +A +N GFI+ PYR V G VT+ V LSA +EEN+ Sbjct: 541 YGRLCPIETPEGPNIGLISSLSVYAEINDKGFIQAPYRVVEKGIVTDKVEMLSAEDEENK 600 Query: 626 YIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLEND 685 + DE+ T E V R G+ +V E++D++D SP Q+VS AA+LIPFLE+D Sbjct: 601 ITVPVSVKFDENRRITTETVQARTKGDYPVVDAEQVDYMDVSPIQIVSAAAALIPFLEHD 660 Query: 686 DSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVI 745 D NR LMG NMQRQAVPLL A+AP VGTGME+ VA+ S A ++A+ G++E V A I + Sbjct: 661 DGNRALMGANMQRQAVPLLVADAPLVGTGMEAKVARDSRAVVLAEGDGVIESVTAESIRV 720 Query: 746 RSVEGDLDPS-------TSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGP 798 R + + GV Y L+KF+RSNQ+TC++Q+P+V+ G ++ + D++ADGP Sbjct: 721 RYDMHEDEDDRMIMLDPDEGVKTYNLIKFKRSNQDTCISQKPVVRTGQKLEKGDVLADGP 780 Query: 799 STDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGP 858 ST+ G+LALG+N+LVAFMPW GYNFED++++SER+V +DVFTSIHI EFE RDTK G Sbjct: 781 STENGELALGKNVLVAFMPWRGYNFEDAIVLSERLVYDDVFTSIHIHEFEANVRDTKRGE 840 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 E+ TRDI NVSE+ L+N+DE GII +GAEV DILVGKITPKGES TPEEKLLRAIFG Sbjct: 841 EQFTRDIYNVSEDALRNLDENGIIRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFG 900 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVIL 978 +K+ DV+D S+ VP+G+ G V+ ++F+R ++ RE+ E + + L Sbjct: 901 DKSSDVKDASMHVPAGMKGIVIKTKLFSR-----KKKVGLDIRERQEAIDALFERRTADL 955 Query: 979 DRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISE------YPRSQWWQFAVQ 1027 + + ++ G+ + G + +VL ++ + + + V+ Sbjct: 956 RSRFNTWMNQLFEGKKSTGIYNLKGKEIVPAGSVLDAETLGKFAGPGFLESVDLSKGIVK 1015 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 D K + L +Y +ED +N+ K+ GD++PPG+ + KV++A KR IQ G Sbjct: 1016 DAKANATLLRLCREYRLMLKDMEDERENEKYKLNIGDELPPGIEELAKVYIAQKRKIQVG 1075 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG+V +ILP ED+PF+ DGTPVDIVLNPLGVPSRMN+GQ++ET LGWA Sbjct: 1076 DKMAGRHGNKGVVGKILPIEDLPFMGDGTPVDIVLNPLGVPSRMNIGQLYETSLGWAARA 1135 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG + K+ I D ++ K+G+P+ Sbjct: 1136 LGVQFKTPIFDGATYTEVQEQLE------------------------------KAGLPM- 1164 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 G+ LYDG TGEPFD VTVGYIYMLKL+H+V DK+ Sbjct: 1165 -----------------------HGKVRLYDGRTGEPFDDEVTVGYIYMLKLSHLVDDKI 1201 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSL+TQQPLGGK+ GGQR GEMEVW ++AYGAA +L+EMLT+KSDDVVGR + Sbjct: 1202 HARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVVGRNK 1261 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 YESIV G + + GTPESFNVLV+E+Q LGL I ++N Sbjct: 1262 TYESIVKGQNLPDPGTPESFNVLVRELQGLGLEIRIDNK 1300 >gi|261749526|ref|YP_003257212.1| DNA-directed RNA polymerase subunit beta [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497619|gb|ACX84069.1| DNA-directed RNA polymerase beta subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 1272 Score = 1275 bits (3298), Expect = 0.0, Method: Composition-based stats. Identities = 575/1373 (41%), Positives = 810/1373 (58%), Gaps = 118/1373 (8%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 R F + ++ PD +++Q S+ F ++ P+ R NEGL AF FPI+ Sbjct: 3 TENVSERITFASVAKQVEYPDFLDIQIKSFKEFFQLDTKPENRKNEGLFKAFTENFPISD 62 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 + +LEF Y D P++ +++C+ R LTY+VPLK L+L D + + Sbjct: 63 ARNSFVLEFKGYSIDTPRYSIEECIERGLTYSVPLKAKLKLYCTDPEHEDF-----ETVY 117 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q +Y+G P MT G+F+ G +R++VSQLHRSPG+ F +G LY+ RIIP Sbjct: 118 QDVYLGTYPYMTPSGSFIFNGAERVIVSQLHRSPGVFFGQSH---HANGTKLYSARIIPF 174 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWC 246 +G W++ D ++++ IDR++K+P+T+ L A+G + + +IL F Sbjct: 175 KGSWIEFATDINNVMYAYIDRKKKLPMTTLLRAIGYERDKDILEIFDLAEEVKITETEDT 234 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 + + L + +L E V Sbjct: 235 KSIL--------------------------SRSLAARILNIWHEDFVDEDT--------- 259 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTD 365 ++++ E E+ I+ I ++ ++ + EI+ I + + + + I NTL D Sbjct: 260 ---GEVISVEKNEVLIDRDVSITQEHIDLMIQHEIKTILLHKKEGKKKDYSIIYNTLQKD 316 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 K+A+ IYR +R + A + + LFF +Y L VGR ++N RL L+ Sbjct: 317 PTNSEKEAVEYIYRQLRNTEPPDEETARGVIDKLFFSDTRYSLGPVGRYRLNKRLGLNIN 376 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 D + KEDIIAI++ L L N K +DDID+L NRRVR+VGE L Q+ +GL RM R+ Sbjct: 377 PDYLVLTKEDIIAIVEHLNALFNSKREVDDIDHLSNRRVRTVGEQLYAQFSIGLARMART 436 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 I+ER++ D + MP DLINAK + S + FF ++QLSQ + N LS +TH RRLSALG Sbjct: 437 IRERMNVRDNEVFMPVDLINAKTLSSVINTFFGTNQLSQFMDQTNPLSELTHKRRLSALG 496 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG++R RAG E+RDV+ +HYGR+CP ET EG NIGL+SSL+ FA++N GF+ETPY+ + Sbjct: 497 PGGLSRERAGFEVRDVNYSHYGRLCPIETPEGPNIGLISSLSVFAKINDMGFVETPYQSI 556 Query: 606 CDGKV--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 DGKV + V YLSA EEE + IAQAN+ +D+ G+F + + R G+ +V +K+D+ Sbjct: 557 HDGKVDLKSKVKYLSAEEEEGKIIAQANA-IDQYGNFISDRIIAREDGDFPIVTPKKVDY 615 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 ID +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLLK EAP VGTG+E VA+ S Sbjct: 616 IDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLKPEAPIVGTGLEKQVARDS 675 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVE---GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 I A+ G+VE +DA +I+IR + L V Y L+KF+++NQNTC+ +P Sbjct: 676 RILINAESNGLVEYLDARKIIIRYEKTEREALVSFEPKVKTYDLIKFRKTNQNTCITLKP 735 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK+G +V + I+ +G +T+ G+LALGRN+ AF+P +GYNFED++LISE++VSED FT Sbjct: 736 IVKMGMKVVKGQILCEGYATENGELALGRNLRAAFIPCNGYNFEDAVLISEKVVSEDWFT 795 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHI+E+ + RDTKLG EE+T DIPNVSEE K++DE GII VGAEV PGDIL+GKITP Sbjct: 796 SIHIDEYSLDVRDTKLGMEELTNDIPNVSEEATKDLDENGIIRVGAEVRPGDILIGKITP 855 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGES TPEEKLLRAIFG+KA +V+D SLR + G V+D ++F R K+++S + Sbjct: 856 KGESDPTPEEKLLRAIFGDKAGNVKDASLRAEPSLFGVVIDTKLFTR--SIKDKKSRVQD 913 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKK------STVLSSDLIS 1014 + Q+E + + + + L + +L +L G+ + KK T ++ L++ Sbjct: 914 KIQLERIEKKYEKKFSDLRNQLLQKLHTVLHGKISKKIIINEKKQEIIEEGTKFTAKLLN 973 Query: 1015 EYPRSQWWQ--FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLR 1072 + D + V + Y+ S + L K+K I GD++P G+++ Sbjct: 974 KISDYIEITPGDWTFDVETNNLVSEILHNYQISVNDLNSMLKHKKFSITVGDELPSGIIK 1033 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 + KV++A KR ++ GDKMAGRHGNKG+V+RIL EDMPFL+DG+PVDIVLNPLGVPSRMN Sbjct: 1034 MAKVYIAKKRKLKVGDKMAGRHGNKGVVARILREEDMPFLEDGSPVDIVLNPLGVPSRMN 1093 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQI+ET LGWA L K + I D IS Sbjct: 1094 IGQIYETVLGWAGYKLNIKFSTPIFDGATIEKISEFTDKANI------------------ 1135 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 P F G + L+DG TGE FD+P TVG Sbjct: 1136 ----------------PRF--------------------GTTYLFDGGTGERFDQPATVG 1159 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 IYMLKL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW ++A+GA+ +L+ Sbjct: 1160 VIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASNILR 1219 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 E+LT+KSDDV GR + YESIV G+ E PESFNVL E++ LGL I+LE Sbjct: 1220 EILTVKSDDVTGRAKTYESIVKGDPMPEPNNPESFNVLCYELKGLGLDINLEE 1272 >gi|282858388|ref|ZP_06267568.1| DNA-directed RNA polymerase, beta subunit [Prevotella bivia JCVIHMP010] gi|282588836|gb|EFB93961.1| DNA-directed RNA polymerase, beta subunit [Prevotella bivia JCVIHMP010] Length = 1269 Score = 1274 bits (3297), Expect = 0.0, Method: Composition-based stats. Identities = 570/1367 (41%), Positives = 809/1367 (59%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 8 RVNFASVKNPYPYPDFLDVQLKSFSDFLQLDTPPEERKNDGLYKVFTENFPITDTRNNFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D A D +++G Sbjct: 68 LEFLDYFVDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFATVTDD-----VFLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 123 TIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGSVLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +S+ +IL F Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTMLRAIGFESDKDILQIFDLCEEVKVNKKNMK------ 233 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+++ ++K+ E V ++ Sbjct: 234 ---------------------AAIGRRIAGNVMKTWTEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E ++ +++++ I S + I + D+ N + I NTL D + Sbjct: 261 VSIERNEVVVERETLVTDENVDVILESSVPTILLHKDEDAANKYSIIFNTLAKDPSHSEI 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +L LDT +VR + Sbjct: 321 EAVNYIYRQLRNADAADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLGLDTDSEVRVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KEDII I+K L++L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 381 TKEDIIEIVKYLINLINSNATVDDIDHLSNRRVRTVGEQLANQFSIGLARMSRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 441 VRDSEVFRPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYR+V D KV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCMYAKINDLGFIITPYRQVRDAKVD 560 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 DVV+L+A EEE + I Q N+ L+ DG+F V CR + +VP + +D SP Sbjct: 561 MDNKDVVFLTAEEEEEKIIGQGNAPLNADGTFIRTTVKCRQDADYPVVPPSNVKLMDVSP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S I+ Sbjct: 621 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMIM 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ + + + YR+ KF+R+NQN ++ RP+ + G Sbjct: 681 AEGEGVIEYVDATTIRILYDRTEDDEFVSFEPALKEYRIPKFRRTNQNMVIDLRPICEKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V++NDI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED+++ISERMV EDV TS+H++ Sbjct: 741 QRVKKNDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAVVISERMVREDVLTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ GII VGA V PGDI++GKI+PKGES Sbjct: 801 EYSLEVRETKRGVEEFTADIPNVSEEATKDLDDNGIIRVGARVEPGDIMIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R K S ++ ++ Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--IKTRESKRQDKAVLQ 918 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQ-----NAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 L +++ + L + +LME+ G+ S + K + + + Sbjct: 919 RLDDEQEAKINDLKDILVDKLMELTEGKESQGVKDYSDAEIITKGSKFTVAALKNLDYEG 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 D+ ++ L + + ++ K + I GD++P GV+++ KV++A Sbjct: 979 VQSNGWTDDDHTNSLIQKLIMNFIRKYKQMDAELKRRKFAITIGDELPSGVIQMAKVYIA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1039 KKRKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLEDGRPVDLVLNPMGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ Sbjct: 1099 ILGAAGRKLGVKFATPIFDGAKLEDLKEWTD----------------------------- 1129 Query: 1200 WKSGVPV--STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1130 -KAGLPNLCSTHIYDGE--------------------------TGERFDQPATVGITYFL 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LT+ Sbjct: 1163 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTV 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI L+ Sbjct: 1223 KSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSIKLD 1269 >gi|325269547|ref|ZP_08136163.1| DNA-directed RNA polymerase subunit beta [Prevotella multiformis DSM 16608] gi|324988166|gb|EGC20133.1| DNA-directed RNA polymerase subunit beta [Prevotella multiformis DSM 16608] Length = 1269 Score = 1273 bits (3295), Expect = 0.0, Method: Composition-based stats. Identities = 580/1367 (42%), Positives = 808/1367 (59%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 8 RVNFASVKNPYPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 68 LEFLDYYVDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 123 TIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGTVLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTMLRAIGYETDRDILQIFDLCEEVKVNKKNMK------ 233 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+K+ ++K+ E V ++ Sbjct: 234 ---------------------AAIGRKIAGNVMKTWTEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E VI E++++EI S + I + ++ N + I NTL D + Sbjct: 261 VSIERNEVVVERETVITEENVDEILDSSVSTILLHKDEEAANKYSIIFNTLAKDPSHSEI 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +LNLDT DVR + Sbjct: 321 EAVNYIYRQLRNADAADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLNLDTDMDVRVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 381 TKDDIIEIIKYLISLINSNATVDDIDHLSNRRVRTVGEQLANQFSIGLARMNRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 441 VRDSEVFQPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYR V D KV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCMYAKINDLGFIVTPYRCVKDSKVD 560 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 DVV+L+A EEE++ I Q N+ L+ DG+F + V CR + +V E ++ ID SP Sbjct: 561 MDNKDVVFLTAEEEEDQIIGQGNAPLNADGTFIRDTVKCRQDADYPVVSPEAVNLIDVSP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S I Sbjct: 621 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMIT 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ E + + YR+ KF+R+NQN V+ RP+ G Sbjct: 681 AEGDGVIEYVDATTIRILYDRTEEEEFVSFEPALKEYRIPKFRRTNQNMVVDLRPICDKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V++ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED+++ISERMV EDV TS+H++ Sbjct: 741 QRVKKGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAVVISERMVREDVLTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ GII VGA V PGDI++GKI+PKGES Sbjct: 801 EYSLEVRETKRGVEEFTSDIPNVSEEATKDLDDNGIIRVGARVEPGDIMIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R K S ++ + Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--IKTRESKRQDKATLA 918 Query: 966 LLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +++ + L + +L+E+ G S + K + + + Sbjct: 919 KIDEEQEAKVNDLKDLLVDKLLELTEDKVSEGVKDYSDAEIITKGSKFTVAALKNLDYEG 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE ++ L + Y ++ K K I GD++P GVL++ KV++A Sbjct: 979 IQSNGWTDDEHTNLLIQKLIMNYIRKYKQMDAELKRKKFAITIGDELPSGVLQMAKVYIA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG+PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1039 KKRKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLEDGSPVDLVLNPMGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ Sbjct: 1099 ILGAAGRKLGVKFATPIFDGAKLSDLKEWTD----------------------------- 1129 Query: 1200 WKSGVPV--STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1130 -KAGLPNLCSTYIYDGE--------------------------TGEKFDQPATVGITYFL 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTI Sbjct: 1163 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTI 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI L+ Sbjct: 1223 KSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSIKLD 1269 >gi|307565738|ref|ZP_07628207.1| DNA-directed RNA polymerase, beta subunit [Prevotella amnii CRIS 21A-A] gi|307345564|gb|EFN90932.1| DNA-directed RNA polymerase, beta subunit [Prevotella amnii CRIS 21A-A] Length = 1269 Score = 1273 bits (3293), Expect = 0.0, Method: Composition-based stats. Identities = 573/1367 (41%), Positives = 810/1367 (59%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 8 RVNFASVKNPYPYPDFLDVQLKSFSDFLQLDTPPEERKNDGLYKVFTENFPITDTRNNFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +++CL R LTY+VPLK ++L D D A D +++G Sbjct: 68 LEFLDYFVDPPRYSIEECLERGLTYSVPLKAKMKLYCTDPDHEDFATVTDD-----VFLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 123 TIPYMTGNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGSVLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +S+ +IL F Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTMLRAIGFESDKDILQIFDLCEEIKVNKKNMK------ 233 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+++ ++K+ E V ++ Sbjct: 234 ---------------------AAIGRRIAGNVMKTWTEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E +I E +++ I S + I + D+ N + I NTL D + Sbjct: 261 VSIERNEVVVERETLITEDNIDIILGSSVPTILLHKDEDAANKYSIIFNTLAKDPSHSEI 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +L ++T +VR + Sbjct: 321 EAVNYIYRQLRNADAADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLGIETDSEVRVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 KEDII I+K L++L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 381 TKEDIIEIVKYLINLINSNATVDDIDHLSNRRVRTVGEQLANQFSIGLARMSRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 441 VRDSEVFRPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYRKV KV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCMYAKINDLGFIVTPYRKVSAAKVD 560 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 +DVVYL+A EEE + I Q N+ L++DG+F E V CR + +V + +D SP Sbjct: 561 MNNDDVVYLTAEEEEEKIIGQGNAPLNDDGTFIRETVKCRKDADYPVVLPSNVSLMDVSP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S I+ Sbjct: 621 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMIM 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G+VE VDA I I R+ E + + YR+ KF+R+NQN ++ RP+ + G Sbjct: 681 AEGDGVVEYVDATTIRILYDRTEEEEFVSFEPALKEYRIPKFRRTNQNMVIDLRPICEKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V++NDI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED+++ISERMV ED+ TS+H++ Sbjct: 741 QRVKKNDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAVVISERMVREDILTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ GII VGA V PGDI++GKI+PKGES Sbjct: 801 EYSLEVRETKRGVEEFTSDIPNVSEETTKDLDDNGIIRVGARVEPGDIMIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R K S ++ ++ Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--LKTRESKRQDKIFLQ 918 Query: 966 LLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 L ++++ + L + +L+E+ G S + K + + + Sbjct: 919 RLDKEQETKINDLKDILVDKLLELTEGKDSSGVKDYSDAEIITKGSKFTIAALKNLDYES 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 +DE ++ L + + ++ K + I GD++P GVL++ KV++A Sbjct: 979 IQSSGWTEDEHTNLLIQKLIMNFIRKYKQMDAELKRRKFAITIGDELPSGVLQMAKVYIA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1039 KKRKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLEDGRPVDLVLNPMGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ Sbjct: 1099 ILGAAGRKLGVKFATPIFDGAKLEDLKEWTD----------------------------- 1129 Query: 1200 WKSGVPV--STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1130 -KAGLPNLCSTHIYDGE--------------------------TGERFDQPATVGVTYFL 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTI Sbjct: 1163 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTI 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI L+ Sbjct: 1223 KSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSIKLD 1269 >gi|213609927|ref|ZP_03369753.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 1144 Score = 1272 bits (3292), Expect = 0.0, Method: Composition-based stats. Identities = 605/1162 (52%), Positives = 822/1162 (70%), Gaps = 18/1162 (1%) Query: 99 AVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLH 158 + PL++ LRL++++ + G ++KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLH Sbjct: 1 SAPLRVKLRLVIYEREAPEG--TVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLH 58 Query: 159 RSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFL 218 RSPG+ FD DKG+ SGK+LY RIIP +G W+D EFD KD + VRIDRRRK+P T L Sbjct: 59 RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIIL 118 Query: 219 MALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGK 278 AL +E+IL F+ K+V+ R + L L G S + G+ +E G+ Sbjct: 119 RALNYTTEQILDLFFEKVVFEIRDNKLQMELIPERL-RGETASFDIE--ANGKVYVEKGR 175 Query: 279 KLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFH 338 ++T+ ++ L++ +K + + + + G V++D V+ TGE+ A + L ++ Sbjct: 176 RITARHIRQLEKDDIKHIEVPVEYIAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQ 235 Query: 339 SEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNF 398 S + I L+ + +++ YI T+ D DR AL++IYR+MRPG+ T AES+F Sbjct: 236 SGHKRIETLFTNDLDHGPYISETVRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 295 Query: 399 LFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDN 458 LFF D+YDLS VGR+K N L D + + K+DII ++K L+D+RNGKG +DDID+ Sbjct: 296 LFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 355 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 LGNRR+RSVGEM +NQ+R+GL+R+ER++KER+S D+D++MPQD+INAKP+ +AV EFF Sbjct: 356 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFG 415 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG Sbjct: 416 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 475 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 NIGL++SL+ +A+ N YGF+ETPYR+V DG VT+++ YLSA+EE N IAQANS+LD++G Sbjct: 476 NIGLINSLSVYAQTNEYGFLETPYRRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEG 535 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 F E+LV CR GE L R+++D++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQR Sbjct: 536 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 595 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG 758 QAVP L+A+ P VGTGME VA SG VAKR G V+ VDA RIVI+ E ++ P +G Sbjct: 596 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAG 655 Query: 759 VDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPW 818 +DIY L K+ RSNQNTC+NQ P V +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW Sbjct: 656 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 715 Query: 819 HGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDE 878 +GYNFEDS+L+SER+V ED FT+IHI+E ++RDTKLGPEEIT DIPNV E L +DE Sbjct: 716 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 775 Query: 879 CGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGT 938 GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGT Sbjct: 776 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 835 Query: 939 VVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSG 998 V+DV++F R G++K++R++ +E Q++ +D +E IL+ ++SR+ +L Sbjct: 836 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVSGGV--- 892 Query: 999 PKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIE 1058 ++ + + PR +W + + DE+ Q +E L QY+ K E + + K Sbjct: 893 ----------EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRR 942 Query: 1059 KIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPV 1118 KI GDD+ PGVL++VKV++A+KR IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPV Sbjct: 943 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1002 Query: 1119 DIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT 1178 DIVLNPLGVPSRMN+GQI ETHLG A G+G KI +++ + + + Sbjct: 1003 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1062 Query: 1179 GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYD 1238 +S + DD VLR+AE + G+P++TPVFDGA E I +L++ DL SGQ L+D Sbjct: 1063 VRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFD 1122 Query: 1239 GLTGEPFDRPVTVGYIYMLKLN 1260 G TGE F+RPVTVGY+YMLKLN Sbjct: 1123 GRTGEQFERPVTVGYMYMLKLN 1144 >gi|260592778|ref|ZP_05858236.1| DNA-directed RNA polymerase, beta subunit [Prevotella veroralis F0319] gi|260535309|gb|EEX17926.1| DNA-directed RNA polymerase, beta subunit [Prevotella veroralis F0319] Length = 1269 Score = 1271 bits (3290), Expect = 0.0, Method: Composition-based stats. Identities = 574/1367 (41%), Positives = 808/1367 (59%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 8 RVNFASVKNPYPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +++CL R LTY+VPLK ++L D D I Q +++G Sbjct: 68 LEFLDYYVDPPRYTIEECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 123 TIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGTVLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +S+ +IL F Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTMLRAIGYESDRDILQIFDLCEEIKVNKKNMK------ 233 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+K+ ++K+ E V ++ Sbjct: 234 ---------------------AAIGRKIAGNVMKTWTEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E ++ +E VI E++++EI S + I + D+ N + I NTL D + Sbjct: 261 VSIERNKVVVERETVITEENVDEILDSSVSTILLHKDEDAANKYSIIFNTLAKDPSHSEI 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +LNLDT D R + Sbjct: 321 EAVNYIYRQLRNADAADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLNLDTDMDTRVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DI+ IIK L+ L N T+DDID+L NRRVR++GE L NQ+ +GL RM R+I+ER++ Sbjct: 381 TKDDIVEIIKYLISLVNSNATVDDIDHLSNRRVRTIGEQLANQFSIGLARMNRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 441 VRDSEVFQPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYR+V D KV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCMYAKINDLGFIVTPYRRVRDSKVD 560 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 DVV+L+A EEE++ I Q N+ L++DG+F + V CR + +V + ++ ID SP Sbjct: 561 MDNKDVVFLTAEEEEDQIIGQGNAPLNDDGTFVRDTVKCRQDADYPVVGPDSVNLIDVSP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S I Sbjct: 621 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMIT 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ + + + YR+ KF+R+NQN V+ RP+ G Sbjct: 681 AEGEGVIEYVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRRTNQNMVVDLRPICDKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V++ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED+++ISERMV EDV TS+H++ Sbjct: 741 QRVKKGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAVVISERMVREDVLTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ GII VGA V PGDI++GKI+PKGES Sbjct: 801 EYSLEVRETKRGVEEFTSDIPNVSEEATKDLDDNGIIRVGARVEPGDIMIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F R K S ++ + Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFARA--IKTRESKRQDKITLA 918 Query: 966 LLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +++ + L + +L+E+ G S + K + ++ + Sbjct: 919 KIDEEQEAKVNDLKDLLVDKLLELTEDKVSEGVKDYSDAEIITKGSKFTAAALKNLDYEG 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE ++ L + + ++ K K I GD++P GVL++ KV++A Sbjct: 979 IQSNGWTDDEHTNLLIQKLIMNFIRKYKQMDAELKRKKFAITIGDELPSGVLQMAKVYIA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1039 KKRKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLEDGRPVDLVLNPMGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ Sbjct: 1099 ILGAAGRKLGVKFATPIFDGAKLSDLKEWTD----------------------------- 1129 Query: 1200 WKSGVPV--STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1130 -KAGLPNLCSTYIYDGE--------------------------TGEKFDQPATVGITYFL 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTI Sbjct: 1163 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTI 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI L+ Sbjct: 1223 KSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSIKLD 1269 >gi|313887243|ref|ZP_07820937.1| DNA-directed RNA polymerase, beta subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312923296|gb|EFR34111.1| DNA-directed RNA polymerase, beta subunit [Porphyromonas asaccharolytica PR426713P-I] gi|332176995|gb|AEE12685.1| DNA-directed RNA polymerase subunit beta [Porphyromonas asaccharolytica DSM 20707] Length = 1280 Score = 1271 bits (3290), Expect = 0.0, Method: Composition-based stats. Identities = 563/1367 (41%), Positives = 776/1367 (56%), Gaps = 109/1367 (7%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 RK F ++ PD +EVQ S+ F +N + R EGL F FPI Sbjct: 8 TRKSFASIAHPMEYPDFLEVQLKSFQDFFQLNTPAESRKKEGLFKVFSENFPIEDTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 L F Y DPPK+ +++CL R LTY+VPL+ L+L D + ++ Q +++ Sbjct: 68 KLLFEDYFVDPPKYSIEECLRRGLTYSVPLRAKLKLTCEDPEHEDFESTV-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GSIPYMTPAGTFVINGAERVVVSQLHRSPGVFFGSSL---HNNGTRLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D+ + ++ IDR++K+P+T+ L A+G +++ +IL F + Sbjct: 180 EFATDTNNELYAYIDRKKKLPITTLLRAIGYETDKDILDLFGIAEEIPVTLESLQANY-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD---CLCGLYV 308 G++L + ++ ++ + ++ L Sbjct: 238 -------------------------GRQLAASVILKYYDEESEEETGETETFARYNTLVE 272 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 I++ + ++ +E G +++ D + ++ + I NTL D Sbjct: 273 QNAILDEDNAQVILENGI----ETILLRRDLATSDQESTDQEVMD-YSIIFNTLKRDSAN 327 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 + A IY ++R A+ +FN +FF +YDL VGR K+N +L LD DV Sbjct: 328 SEQAAYNFIYNLLRNSTPPDDQSAKEIFNNIFFSEKRYDLGDVGRYKINSKLGLDIDPDV 387 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + + EDI+AII+ L+ L NGK +DDID+L NRRVR+VGE L NQ+ +GL RM R++KE Sbjct: 388 KILTAEDIVAIIRHLIKLVNGKAPVDDIDHLSNRRVRTVGEQLYNQFSIGLSRMARTVKE 447 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R++ D + P DL+N+K + S V FF ++ LSQ + N LS ITH RRLSALG GG Sbjct: 448 RMNVRDSEVFTPVDLVNSKTIASVVNSFFGTNALSQFMDQQNPLSEITHKRRLSALGPGG 507 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 + R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFI TPYR V DG Sbjct: 508 LTRDRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINELGFITTPYRNVKDG 567 Query: 609 KV---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 V + + Y +A EEE++ +AQ N+ LD+DG F V R + +V E++D +D Sbjct: 568 TVDFEDSKLAYFTAEEEEDKTVAQGNAPLDDDGHFIRSRVKARYGADFPVVEPEEVDLMD 627 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 SP Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL EAP VGTG+E + S Sbjct: 628 VSPTQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLTPEAPIVGTGIERRLVSDSRT 687 Query: 726 AIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 I A G+V VDA +IV+ E +L Y L K++++NQ+T ++ P+ Sbjct: 688 QIEAAGDGVVVYVDATKIVVDYDRTEEEELVSFEPSEVTYSLPKYRKTNQSTTIDLSPIC 747 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD V + I+++G ST G+LALGRN+L A+MPW GYN+ED+++++ER+VSED+FTSI Sbjct: 748 RKGDRVVKGQILSEGFSTQDGELALGRNILAAYMPWKGYNYEDAIVLNERVVSEDLFTSI 807 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 H++E+ + R+TK G EE T DIPNVSEE K++D GI+ VGA + PGDILVGKITPKG Sbjct: 808 HVDEYSLDVRETKRGMEEFTADIPNVSEEATKDLDANGIVRVGARIVPGDILVGKITPKG 867 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH----GIDKNERSIS 958 ES TPEEKLL AIFG+KA DV+D SL+ + G V+D ++++R GI + Sbjct: 868 ESDPTPEEKLLLAIFGDKAGDVKDASLKASPSLKGVVIDTKLYSRANRKGGISATRKITQ 927 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 E++ L +E V + I + G K T +S L+ E Sbjct: 928 RYEEELSKLQAALKEELVSKLQIILKKHKTTATDFVDYIGVVKVKAGTRISKSLLLELDY 987 Query: 1019 SQW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 + DE V+ Y I + GD++P G+++ K+ Sbjct: 988 NDLRMSDWTNDEHTNELVKQTIANYIKKDKITIAEVNRRKLDETLGDELPSGIIQTAKIL 1047 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A KR IQ GDKMAGRHGNKGIVS+I+ EDMP+L DGTPVDI LNPLGVPSRMN+GQIF Sbjct: 1048 IAKKRKIQVGDKMAGRHGNKGIVSKIVRREDMPYLPDGTPVDICLNPLGVPSRMNLGQIF 1107 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 E L WA LG K + I D D++ A Sbjct: 1108 EAVLAWAGRKLGVKFATPIFDGATLDDLN------------------------------A 1137 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P GQ LYDG TGEPFD+ TVG Y L Sbjct: 1138 WTDKAGLP------------------------RGGQMKLYDGGTGEPFDQEATVGVTYFL 1173 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGKSN GGQR GEMEVW ++A+GAA+VLQE+LTI Sbjct: 1174 KLGHMVDDKMHARSIGPYSLITQQPLGGKSNFGGQRFGEMEVWALEAFGAAHVLQEILTI 1233 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G++ G PES NVL+ E++ L LS+ +E Sbjct: 1234 KSDDVVGRSKAYEAIVRGDNMPTPGLPESLNVLLNELKGLALSVHIE 1280 >gi|78188335|ref|YP_378673.1| DNA-directed RNA polymerase subunit beta [Chlorobium chlorochromatii CaD3] gi|88909128|sp|Q3ATP5|RPOB_CHLCH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|78170534|gb|ABB27630.1| DNA-directed RNA polymerase subunit beta [Chlorobium chlorochromatii CaD3] Length = 1300 Score = 1271 bits (3289), Expect = 0.0, Method: Composition-based stats. Identities = 587/1412 (41%), Positives = 831/1412 (58%), Gaps = 180/1412 (12%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F K II+ PDL++VQ S+ +F+ ++ +R ++GL+ + FPIT G + Sbjct: 8 RIDFSKIKSIINSPDLLKVQLDSFHNFIQDSVPLAKRKDQGLERVLRGAFPITDTRGLYL 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LE++SY FD PK+ V++C+ R LTY V LK+ L+L D K+ +Q +Y+G Sbjct: 68 LEYISYAFDKPKYTVEECIERGLTYDVSLKVKLKLSYKD---EADEPDWKETIQQEVYLG 124 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT+ GTF++ G +R+VV+QLHRSPG+ F +GK +++ +I+P +G W++ Sbjct: 125 RIPYMTERGTFIVNGAERVVVAQLHRSPGVVFSE---AVHPNGKKMFSAKIVPTRGSWIE 181 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGM-DSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 + D + I V ID+++ VT+ L A+G E+IL+ F Sbjct: 182 FQTDINNQIFVYIDQKKNFLVTALLRAIGFARDEDILALF-------------------- 221 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 LV+ E +++ K+ + L G Y+A DI Sbjct: 222 ----------DLVE----EVSLKASKR---------------------EQLVGQYLASDI 246 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN----NNAYIRNTLVTDKNK 368 V+ +TGE+ A I E+ E+I + + I ++ S N + + I NT++ D + Sbjct: 247 VDMQTGEVI-SARTAITEEIFEQILLAGYKSIKVMKSFSNNEKGMDKSVIINTILNDSSA 305 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD-- 426 ++AL +Y +R + A S FF+ KYDL VGR ++ +L + + Sbjct: 306 TEEEALEIVYEELRANEAPDIEAARSFLERTFFNQKKYDLGDVGRYRIKKKLRREFEELY 365 Query: 427 ----------------------------------DVRHIRKEDIIAIIKILVDLRNGKGT 452 D+ + DIIA+I L+ L NG+ Sbjct: 366 SFIGEKPELKALSDTIEEKILQTIQTYSDEPIGEDILVLTHYDIIAVIYYLIKLVNGQAE 425 Query: 453 IDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSA 512 +DD+D+L NRRVRSVGE L Q+ +GL RM ++++E+++S D D + P DLINA+ V S Sbjct: 426 VDDVDHLANRRVRSVGEQLAAQFVVGLARMGKNVREKLNSRDSDKIAPSDLINARTVSSV 485 Query: 513 VCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPA 572 V FF +SQLSQ + N L+ +T+ RR+SALG GG+ R RAG E+RDVH THYGR+CP Sbjct: 486 VSSFFATSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPI 545 Query: 573 ETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANS 632 ET EG NIGL+SSL+ +A +N GFI+TPYR V +G+VT+ VV LSA +EEN+ + Sbjct: 546 ETPEGPNIGLISSLSVYAEINDKGFIQTPYRLVDNGQVTDTVVMLSAEDEENKITVPVSI 605 Query: 633 SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM 692 LDE+ E V R G+ +V + ++D SP Q+VS AA+LIPFLE+DD NR LM Sbjct: 606 PLDENNRIAVETVQARTKGDYPVVAATDVHYMDVSPVQIVSAAAALIPFLEHDDGNRALM 665 Query: 693 GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDL 752 G NMQRQAVPLL ++AP VGTGME VA+ S A IVA+ G V V A I +R Sbjct: 666 GANMQRQAVPLLTSDAPVVGTGMEGKVARDSRAVIVAEGPGEVVDVTADYIQVRYQLDAD 725 Query: 753 D-------PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDL 805 + G+ Y+L+KF+RSNQ+TC++Q+PLV++GD+V +N ++AD ST+ G+L Sbjct: 726 NNLRLSMLDPDEGLKTYKLIKFKRSNQDTCISQKPLVRIGDKVEKNTVLADSSSTEYGEL 785 Query: 806 ALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDI 865 ALG+N+LVAFMPW GYNFED++++SER+V +DVFTSIHI EFE RDTK G E+ TRDI Sbjct: 786 ALGKNVLVAFMPWRGYNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDI 845 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 NVSEE L+N+DE GI+ GAEV DILVGKITPKGES TPEEKLLRAIFG+K+ DV+ Sbjct: 846 YNVSEEALRNLDENGIVRCGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVK 905 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSR 985 D S+ VP+G+ G ++ ++F+R K + + + +E+IELL + ++ L + Sbjct: 906 DASMHVPAGMKGIIIKTKLFSR----KKKIGLDI-KEKIELLDKQFAAKEYDLRKRFAKW 960 Query: 986 LMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQF------AVQDEKVQRN 1034 L L G G + TV +++++ +Q+ + V +K +N Sbjct: 961 LKHFLDGKTSTGVYNDKGKVVVPEGTVFEESVLAKFATAQFLESVDLSRGVVSSDKTNKN 1020 Query: 1035 VESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRH 1094 V L ++ + D +N+ K+ GD++PPG+ + KV++A KR IQ GDKMAGRH Sbjct: 1021 VTRLIKEFRFLLKDIADERENEKYKVNVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRH 1080 Query: 1095 GNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKS 1154 GNKG+V +ILP EDMPF+ DGTPVDIVLNPLGVPSRMN+GQ++ET LGWA LG K K+ Sbjct: 1081 GNKGVVGKILPVEDMPFMADGTPVDIVLNPLGVPSRMNIGQLYETSLGWAAKKLGVKFKT 1140 Query: 1155 LINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGA 1214 I + ++ ++G+P Sbjct: 1141 PIFNGATYEEVQRELE------------------------------RAGLP--------- 1161 Query: 1215 DEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGS 1274 G+ L+DG TGE FD VTVGYIYMLKL+H+V DK++ARSTG Sbjct: 1162 ---------------THGKVSLFDGRTGERFDDEVTVGYIYMLKLSHLVDDKIHARSTGP 1206 Query: 1275 YSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVA 1334 YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ +L+EMLT+KSDDVVGR + YE+IV Sbjct: 1207 YSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASNILREMLTVKSDDVVGRNKTYEAIVK 1266 Query: 1335 GNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 G + E G PESFNVLV+E+Q LGL I +++ Sbjct: 1267 GQNLPEPGIPESFNVLVRELQGLGLEIRIDDK 1298 >gi|228470322|ref|ZP_04055226.1| DNA-directed RNA polymerase, beta subunit [Porphyromonas uenonis 60-3] gi|228308065|gb|EEK16940.1| DNA-directed RNA polymerase, beta subunit [Porphyromonas uenonis 60-3] Length = 1280 Score = 1270 bits (3286), Expect = 0.0, Method: Composition-based stats. Identities = 554/1367 (40%), Positives = 775/1367 (56%), Gaps = 109/1367 (7%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 RK F ++ PD +EVQ S+ F ++ + R EGL F FPI Sbjct: 8 TRKSFASIAHPMEYPDFLEVQLKSFQDFFQLDTPAESRKKEGLFKVFSENFPIEDTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 L F Y DPPK+ +++CL R LTY+VPL+ L+L D + ++ Q +++ Sbjct: 68 KLLFEDYFVDPPKYSIEECLRRGLTYSVPLRAKLKLTCEDPEHEDFESTV-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT GTFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GSIPYMTPAGTFVINGAERVVVSQLHRSPGVFFGSSL---HNNGTRLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D+ + ++ IDR++K+P+T+ L A+G +++ +IL F + Sbjct: 180 EFATDTNNELYAYIDRKKKLPITTLLRAIGYETDKDILDLFGIAEEVPVTLETLQANY-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD---CLCGLYV 308 G++L + ++ ++ + ++ L Sbjct: 238 -------------------------GRQLAASVILKYYDEESEEETGETETFARYNTLVE 272 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 I++ E ++ +E G +++ D + ++ + I NTL D Sbjct: 273 QNAILDEENAQVILENGI----ETILLRRDLSTSDQESTDQEVMD-YSIIFNTLKRDSAN 327 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 + A IY ++R A+ +FN +FF +YDL VGR K+N +L LD D+ Sbjct: 328 SEQAAYNFIYNLLRNSTPPDDQSAKEIFNNIFFSEKRYDLGDVGRYKINSKLGLDIDPDI 387 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 R + EDI+AII+ L+ L NGK +DDID+L NRRVR+VGE L NQ+ +GL RM R++KE Sbjct: 388 RILTAEDIVAIIRHLIKLVNGKAPVDDIDHLSNRRVRTVGEQLYNQFSIGLSRMARTVKE 447 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R++ D + P DL+N+K + S V FF ++ LSQ + N LS ITH RRLSALG GG Sbjct: 448 RMNVRDSEVFTPVDLVNSKTIASVVNSFFGTNALSQFMDQQNPLSEITHKRRLSALGPGG 507 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 + R RAG E+RDVH THYGR+CP ET EG NIGL+SSL +A++N GFI TPYR V G Sbjct: 508 LTRDRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINELGFITTPYRNVDKG 567 Query: 609 KVT---NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 V+ + + Y +A EEE++ +AQ N+ L EDG F V R + +V ++D +D Sbjct: 568 TVSFKDSQLGYYTAEEEEDKTVAQGNAPLSEDGHFVRSRVKARYGADFPVVEPSEVDLMD 627 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 SP Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL EAP VGTG+E + S Sbjct: 628 VSPTQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLTPEAPIVGTGIERRLVSDSRT 687 Query: 726 AIVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 + A+ G+V VDA +IV+ E +L Y+L K++++NQ+T ++ P+ Sbjct: 688 QVEAEGDGVVVYVDATKIVVDYDRTEEEELVSFEPSEVTYKLPKYRKTNQSTTIDLSPVC 747 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + GD V + I+ G ST G+LALGRN+L A+MPW GYN+ED+++++ER+V+ED+FTS+ Sbjct: 748 RKGDRVTKGQILTQGFSTQDGELALGRNILAAYMPWKGYNYEDAIVLNERVVAEDLFTSV 807 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 H++E+ + R+TK G EE T DIPNVSEE K++D GI+ VGA + PGDILVGKITPKG Sbjct: 808 HVDEYSLDVRETKRGMEEFTADIPNVSEEATKDLDTNGIVRVGARIVPGDILVGKITPKG 867 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH----GIDKNERSIS 958 ES TPEEKLL AIFG+KA DV+D SL+ + G V+D ++++R GI + Sbjct: 868 ESDPTPEEKLLLAIFGDKAGDVKDASLKASPSLKGVVIDTKLYSRANRKGGIVATRKINQ 927 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 E++ L +E V + I + G K T ++ L+ E Sbjct: 928 RYEEELSKLQSALKEELVSKLQIILKKHKATATDFVDYIGIVKVKAGTRITKSLLLELDY 987 Query: 1019 SQW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 + +DE + V+ Y + + GD++P G+++ K+ Sbjct: 988 NDLRMSDWTKDEHTNQLVKQTIANYIKKDKVTIADVNRRKLDETLGDELPSGIIQTAKIL 1047 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A KR IQ GDKMAGRHGNKGIVS+I+ EDMP+L DGTPVDI LNPLGVPSRMN+GQIF Sbjct: 1048 IAKKRKIQVGDKMAGRHGNKGIVSKIVRREDMPYLPDGTPVDICLNPLGVPSRMNLGQIF 1107 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVA 1197 E L WA LG K + I D D++ Sbjct: 1108 EAVLAWAGRKLGVKFATPIFDGATLDDLNEWTD--------------------------- 1140 Query: 1198 EQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P GQ L+DG TGEPFD+ TVG Y L Sbjct: 1141 ---KAGLP------------------------RGGQMKLFDGGTGEPFDQEATVGVTYFL 1173 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGKSN GGQR GEMEVW ++A+GAA+VLQE+LTI Sbjct: 1174 KLGHMVDDKMHARSIGPYSLITQQPLGGKSNFGGQRFGEMEVWALEAFGAAHVLQEILTI 1233 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G++ G PES NVL+ E++ L LS+ +E Sbjct: 1234 KSDDVVGRSKAYEAIVRGDNMPTPGLPESLNVLLNELKGLALSVHIE 1280 >gi|325853552|ref|ZP_08171384.1| DNA-directed RNA polymerase, beta subunit [Prevotella denticola CRIS 18C-A] gi|325484356|gb|EGC87284.1| DNA-directed RNA polymerase, beta subunit [Prevotella denticola CRIS 18C-A] Length = 1289 Score = 1269 bits (3283), Expect = 0.0, Method: Composition-based stats. Identities = 577/1367 (42%), Positives = 810/1367 (59%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 28 RINFASVKNPYPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 87 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +++CL R LTY+VPLK ++L D D I Q +++G Sbjct: 88 LEFLDYYVDPPRYSIEECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 142 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 143 TIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGTVLYSARIIPFKGSWIE 199 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 200 FATDINNVMYAYIDRKKKLPVTTMLRAIGYETDRDILQIFDLCEEVKVNKKNMK------ 253 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+K+ ++K+ E V ++ Sbjct: 254 ---------------------AAIGRKIAGNVMKTWTEDFVDEDT------------GEV 280 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E VI E++++EI S + I + ++ N + I NTL D + Sbjct: 281 VSIERNEVVVERETVITEENVDEILDSSVSTILLHKDEEAANKYSIIFNTLAKDPSHSEM 340 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +LNLDT DVR + Sbjct: 341 EAVNYIYRQLRNADAADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLNLDTDMDVRVL 400 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 401 TKDDIIEIIKYLISLINSNATVDDIDHLSNRRVRTVGEQLANQFSIGLARMNRTIRERMN 460 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 461 VRDSEVFQPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 520 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYR+V D KV Sbjct: 521 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCMYAKINDLGFIVTPYRRVKDSKVD 580 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 DVV+L+A EEE++ I Q N+ L++DG+F E V CR + +V + ++ ID SP Sbjct: 581 MDNKDVVFLTAEEEEDQIIGQGNAPLNDDGTFIRETVKCRQDADYPVVGPDSVNLIDVSP 640 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S + Sbjct: 641 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMVT 700 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ GI+E VDA I I R+ E + + YR+ KF+R+NQN V+ RP+ G Sbjct: 701 AEGDGIIEYVDATTIRILYDRTEEEEFVSFEPALKEYRIPKFRRTNQNMVVDLRPICDKG 760 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V++ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED+++ISERMV EDV TS+H++ Sbjct: 761 QRVKKGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAVVISERMVREDVLTSVHVD 820 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ GII VGA V PGDI++GKI+PKGES Sbjct: 821 EYSLEVRETKRGVEEFTSDIPNVSEEATKDLDDNGIIRVGARVEPGDIMIGKISPKGESD 880 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R K S ++ + Sbjct: 881 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--IKTRESKRQDKVTLA 938 Query: 966 LLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +++ + L + +L+E+ G S + K + + + Sbjct: 939 KIDEEQEAKVNDLKDLLVDKLLELTADKVSEGVKDYSDAEIITKGSKFTVAALKNLDYEG 998 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE ++ L + Y ++ K + I GD++P GVL++ KV++A Sbjct: 999 IQSNGWTDDEHTNLLIQKLIMNYIRKYKQMDAELKRRKFAITIGDELPSGVLQMAKVYIA 1058 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL++G+PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1059 KKRKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLENGSPVDLVLNPMGVPSRMNLGQIFEA 1118 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ Sbjct: 1119 ILGAAGRKLGVKFATPIFDGAKLSDLKEWTD----------------------------- 1149 Query: 1200 WKSGVPV--STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1150 -KAGLPNLCSTYIYDGE--------------------------TGEKFDQPATVGITYFL 1182 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTI Sbjct: 1183 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTI 1242 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI L+ Sbjct: 1243 KSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSIKLD 1289 >gi|327313175|ref|YP_004328612.1| DNA-directed RNA polymerase subunit beta [Prevotella denticola F0289] gi|326945816|gb|AEA21701.1| DNA-directed RNA polymerase, beta subunit [Prevotella denticola F0289] Length = 1269 Score = 1268 bits (3282), Expect = 0.0, Method: Composition-based stats. Identities = 578/1367 (42%), Positives = 810/1367 (59%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 8 RINFASVKNPYPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +++CL R LTY+VPLK ++L D D I Q +++G Sbjct: 68 LEFLDYYVDPPRYSIEECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 123 TIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGTVLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTMLRAIGYETDRDILQIFDLCEEVKVNKKNMK------ 233 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+K+ ++K+ E V ++ Sbjct: 234 ---------------------AAIGRKIAGNVMKTWTEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E VI E++++EI S + I + ++ N + I NTL D + Sbjct: 261 VSIERNEVVVERETVIAEENVDEILDSSVSTILLHKDEEAANKYSIIFNTLAKDPSHSEM 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +LNLDT DVR + Sbjct: 321 EAVNYIYRQLRNADAADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLNLDTDMDVRVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 381 TKDDIIEIIKYLISLINSNATVDDIDHLSNRRVRTVGEQLANQFSIGLARMNRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 441 VRDSEVFQPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYR+V D KV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCMYAKINDLGFIVTPYRRVKDSKVD 560 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 DVV+L+A EEE++ I Q N+ L++DG+F E V CR + +V + ++ ID SP Sbjct: 561 MDNKDVVFLTAEEEEDQIIGQGNAPLNDDGTFIRETVKCRQDADYPVVGPDSVNLIDVSP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S + Sbjct: 621 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMVT 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ GI+E VDA I I R+ E + + YR+ KF+R+NQN V+ RP+ G Sbjct: 681 AEGDGIIEYVDATTIRILYDRTEEEEFVSFEPALKEYRIPKFRRTNQNMVVDLRPICDKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V++ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED+++ISERMV EDV TS+H++ Sbjct: 741 QRVKKGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAVVISERMVREDVLTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ GII VGA V PGDI++GKI+PKGES Sbjct: 801 EYSLEVRETKRGVEEFTSDIPNVSEEATKDLDDNGIIRVGARVEPGDIMIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R K S ++ + Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--IKTRESKRQDKVTLA 918 Query: 966 LLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +++ + L + +L+E+ G S + K + + + Sbjct: 919 KIDEEQEAKVNDLKDLLVDKLLELTADKVSEGVKDYSDAEIITKGSKFTVAALKNLDYEG 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE ++ L + Y ++ K + I GD++P GVL++ KV++A Sbjct: 979 IQSNGWTDDEHTNLLIQKLIMNYIRKYKQMDAELKRRKFAITIGDELPSGVLQMAKVYIA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG+PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1039 KKRKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLEDGSPVDLVLNPMGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ Sbjct: 1099 ILGAAGRKLGVKFATPIFDGAKLSDLKEWTD----------------------------- 1129 Query: 1200 WKSGVPV--STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1130 -KAGLPNLCSTYIYDGE--------------------------TGEKFDQPATVGITYFL 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTI Sbjct: 1163 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTI 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G G PES NVL+ E++ LGLSI L+ Sbjct: 1223 KSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSIKLD 1269 >gi|189218816|ref|YP_001939457.1| DNA-directed RNA polymerase subunit beta [Methylacidiphilum infernorum V4] gi|226699420|sp|B3E163|RPOB_METI4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|189185674|gb|ACD82859.1| DNA-directed RNA polymerase, beta subunit [Methylacidiphilum infernorum V4] Length = 1289 Score = 1268 bits (3282), Expect = 0.0, Method: Composition-based stats. Identities = 600/1374 (43%), Positives = 837/1374 (60%), Gaps = 134/1374 (9%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R FGK E + +P+LIE Q SY FL +++AP ER EGL F VFPI ++ G Sbjct: 4 KIQRINFGKIREGLSLPNLIEHQTKSYADFLQLSVAPQERKAEGLHGVFLEVFPIESYDG 63 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 LE+V+YE KF DCL TYA PL +T RL K + +KE+ + Sbjct: 64 KVKLEYVNYEIGESKFSPIDCLRDGKTYAAPLYVTFRL-----------KDEEGVKEEKV 112 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 YMG+LP+MT G+F+I G +R++V+QLHRSPGI F+ +GK LY+ RIIPD+G Sbjct: 113 YMGELPMMTPQGSFIINGAERVIVNQLHRSPGICFESSF---HSNGKTLYSFRIIPDRGS 169 Query: 191 WMDIEFDSKDIIHVRIDRR---RKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCF 247 W+++ FD+ D+++V +DRR RK +T+ Sbjct: 170 WLEVAFDTNDLLYVYLDRRKKRRKFLITT------------------------------- 198 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 + + + G + L +++E + GI D + Sbjct: 199 ----------LLRALAAALSGPSSPLGSGGDEEIIRLFYTVEELNLSE-GIDEDKVATKV 247 Query: 308 VAEDIVNGET-GEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDK 366 + ++ + + A + + + ++ I+ I ++ V + + L D Sbjct: 248 LVSEVKDPHNPDVVLARAYEPVTRSVVRQLLDVGIQSISVVDVQYDDT---LIKCLKKDP 304 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 KD +AL +IYR +RPGD T S A+ + L D +YDL VGR K+N +LN+ Sbjct: 305 TKDPVEALKEIYRRLRPGDPPTESNAKLLLKRLLLDPKRYDLGRVGRYKLNQKLNIQVDP 364 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 D+R + ED++A + L+ LR G+G DDID+LG+RRVR+VGE++ NQ R+GL R ER + Sbjct: 365 DIRILTWEDLVAATRYLIKLRKGEGITDDIDHLGSRRVRTVGELVANQCRMGLARTERLV 424 Query: 487 KERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSAL 544 KER++ D + + PQ LIN K + + + +FF SQLSQL + +N LS +TH RRLSAL Sbjct: 425 KERMTLFDVNTEGMTPQKLINPKALSATIRDFFARSQLSQLMDQINPLSELTHKRRLSAL 484 Query: 545 GQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604 G GG++R RAG E+RDVHP+HYGRICP ET EG NIGL++++ S++R N YG +ETPYRK Sbjct: 485 GPGGLSRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIATMASYSRFNDYGILETPYRK 544 Query: 605 VCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 V +GKVTN++VY +A +EEN IA AN+++ EDG+ ++ V R E + V REK++++ Sbjct: 545 VLNGKVTNEIVYFTADQEENYVIAMANTAVSEDGTILDQRVAVRFRREFMEVEREKVEYM 604 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D SPKQ+VS+AA LIPFLE+DD+NR LMG NMQRQAVPL++ EAP VGTG+E VA+ Sbjct: 605 DVSPKQIVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLIQPEAPIVGTGIEERVARDIQ 664 Query: 725 AAIVAKRAGIVEQVDAIRIVIRSVEGDLDP--------STSGVDIYRLMKFQRSNQNTCV 776 A IV++ G V V I++ ++ S +Y+L KF RSN TC+ Sbjct: 665 AVIVSEVDGTVSSVTGKEIIVTPTGSPVEQKKKKSKQGSEREGIVYKLNKFMRSNAGTCI 724 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQ+P+VK G V++ D++ADGPST G+LALGRN+LVAFMPW+GYNFED++++SER+V E Sbjct: 725 NQKPIVKKGQVVKKGDVLADGPSTQNGELALGRNLLVAFMPWNGYNFEDAIIVSERVVKE 784 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D+FTSI+I+EFE++ARDTKLGPEEITRDIPNV +E LKN+ GII VGAEV PGDILVG Sbjct: 785 DLFTSIYIDEFEIVARDTKLGPEEITRDIPNVGDEALKNLGPDGIIRVGAEVKPGDILVG 844 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFN-RHGIDKNER 955 KITPK E+ + PEE+LLRAIFGEKA DV+D+SLRVPSG G V+DVR+ + + K + Sbjct: 845 KITPKSETELAPEERLLRAIFGEKAADVKDSSLRVPSGTYGIVMDVRVSSGTARVRKEKI 904 Query: 956 SISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL------S 1009 + S +++I+ + D ++ L + L IL + + ++ Sbjct: 905 NASEAKQKIKEIEERYDQKEEELREELTQALSNILLNEKIPLDVVNVETGEIIIPANRKI 964 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + ++ + + + ++ + + +E L + + ++++I+ G+D PG Sbjct: 965 TKVLLRKMAQAYDKIEIDPSPIRSKIFEIIGNFEAKFEQLRNDRELELDQIESGEDTEPG 1024 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 +++ VKVF+A KR + GDKMAGRHGNKG+VS+I+P EDMP+L DGTPVDIVLNPLGVPS Sbjct: 1025 IIKQVKVFIANKRKLSVGDKMAGRHGNKGVVSKIVPVEDMPYLPDGTPVDIVLNPLGVPS 1084 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYD 1189 RMNVGQ+ ETHLG A LG + + + D I Sbjct: 1085 RMNVGQVLETHLGIAAKKLGFNVATPVFDGVKEEKIREFLVKA----------------- 1127 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 G DE+ G+SILYDG TGE F++ V Sbjct: 1128 -----------------------GMDED--------------GKSILYDGRTGEMFNQRV 1150 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 VG IYM+KLNHMV+DK++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1151 VVGMIYMMKLNHMVADKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWAMEAYGAAY 1210 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 +LQE+LT+KSDDV GRTR+YESIV G + ET TPESFNVL+KE+Q L L +++ Sbjct: 1211 ILQELLTVKSDDVQGRTRIYESIVKGENYLETTTPESFNVLIKELQGLCLEVNI 1264 >gi|187735536|ref|YP_001877648.1| DNA-directed RNA polymerase, beta subunit [Akkermansia muciniphila ATCC BAA-835] gi|187425588|gb|ACD04867.1| DNA-directed RNA polymerase, beta subunit [Akkermansia muciniphila ATCC BAA-835] Length = 1312 Score = 1267 bits (3279), Expect = 0.0, Method: Composition-based stats. Identities = 613/1388 (44%), Positives = 857/1388 (61%), Gaps = 149/1388 (10%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R +FG E+I+ P+LIE+Q SY FL + R N GLQ K +FPI ++ Sbjct: 4 RLYFGNIKEVIEPPNLIEIQLQSYFDFLQQDTPAAARKNIGLQGVLKEIFPIKSYDENIE 63 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 L+FVSY+ + PK + + TY+ L++T +L KS + KE+++YMG Sbjct: 64 LDFVSYDIEQPKMSDYEAIRAGETYSAALQVTFKL-----------KSDNESKEETVYMG 112 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +LP+MT GTFVI G +R++VSQLHRSPGI F+ + L+GKLL++ RIIPD+G W++ Sbjct: 113 ELPMMTNRGTFVINGAERVIVSQLHRSPGICFESAQ---HLNGKLLHSFRIIPDRGSWLE 169 Query: 194 IEFDSKDIIHVRIDRRR---KVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250 ++FD+ D+++V +DRRR K T+F+ LG + + + SQ + PLS Sbjct: 170 VQFDTNDLLYVYLDRRRRRRKFLATTFMRYLGFKT--------DRDIVSQFYNIRTLPLS 221 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 T + L L + Sbjct: 222 EDM---------------------------------------------TEEDLHNLVAVD 236 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 I + + + +A + ++ + ++ I+ I ++ + + + TL D D Sbjct: 237 TIKDKDL--VLAKAFEQLNMGVVRQLLQFGIKKIDVID---QSEDDVLIKTLKKDPAHDE 291 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 + AL +IY+ +RPGD +T + A ++ LF D KYDL+ VGR K+N +L LDT D R Sbjct: 292 ESALKEIYKRLRPGDPATAAQARTLLKRLFDDPKKYDLTRVGRYKINQKLGLDTSLDQRL 351 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + ED +A +K L+ L+ G+G +DDID+LG+RRVR+VGE++ NQ R+GL R ER +KER+ Sbjct: 352 MTAEDFLAALKYLLRLKKGEGMVDDIDHLGSRRVRAVGELMANQCRVGLARTERLVKERM 411 Query: 491 SSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 + +D I+ V P LIN K + + V +FF SQLSQ + +N L+ +TH RRLSALG GG Sbjct: 412 TLIDQNIEGVTPSKLINPKALSAVVRDFFGRSQLSQFMDQINPLAELTHKRRLSALGPGG 471 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 + R RAG E+RDVHP+HYGRICP ET EG NIGL++S+ ++AR+N +GFIETPYRKV +G Sbjct: 472 LNRDRAGFEVRDVHPSHYGRICPIETPEGPNIGLINSMCTYARINEFGFIETPYRKVENG 531 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 +VTN + Y++A +EE IAQAN+ LDE G+FT V R GE I V + ++D SP Sbjct: 532 RVTNTIEYVTADQEEGYLIAQANNPLDEQGNFTTSRVTAREKGEFIEVDPADVHYMDVSP 591 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 KQ+VSIAA LIPFLE+DD+NR LMG NMQRQ VPL+ AE+P+VGTG+E A+ S + ++ Sbjct: 592 KQLVSIAAGLIPFLEHDDANRALMGSNMQRQGVPLMVAESPYVGTGIEGKCARDSRSVVL 651 Query: 729 AKRAGIVEQVDAI--------RIVIRSV------EGDLDPSTSGVDIYRLMKFQRSNQNT 774 A+ GIV A + +R + +GV +Y L KF RSN T Sbjct: 652 AEADGIVASATAEVIITTKDGELPVRPEVFLSDPDSVRTDRDNGVYVYPLRKFMRSNAGT 711 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQRP+V+ GD+++ D++ADGP+TD G+LALGRN+LVA+MPW+GYNFED+++ISE+ V Sbjct: 712 CINQRPIVRRGDKIKTGDVLADGPNTDQGELALGRNVLVAYMPWNGYNFEDAIVISEKTV 771 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED FTSIHI EFEV ARDTKLGPEEITRDIPN +E LKN+D G+I +GAEV PGDIL Sbjct: 772 KEDTFTSIHISEFEVQARDTKLGPEEITRDIPNAGDEALKNLDHDGVIRIGAEVKPGDIL 831 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI------FNRH 948 VGKITPK E+ + PEE+LLRAIFGEKA +V+DTSLRVPSG +G V+DVRI +R Sbjct: 832 VGKITPKSETELAPEERLLRAIFGEKAAEVKDTSLRVPSGCTGIVMDVRISSTGSGHHRG 891 Query: 949 GIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNA-------VSGPKG 1001 + + + +++Q + + + ++ L + +L +IL G+ +G Sbjct: 892 DLVVDS---AEKKKQFKKINDEHKKKKEQLIDQLTKKLSDILLGEKIPLDVVNEQTGEII 948 Query: 1002 FKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQ 1061 + ++ L+ + ++ ++ + + +E + L+D ++++++++ Sbjct: 949 IPANRKITKTLLRKLAL-VHDHIEIEPSPIRNKILEIITSFEGRFTELDDEREHRLDQME 1007 Query: 1062 WGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIV 1121 GD+ PG L+ VKV++A KR + GDKMAGRHGNKG+V++I+P +DMPFL DGTPVDIV Sbjct: 1008 SGDESEPGGLKEVKVYIAAKRKLGVGDKMAGRHGNKGVVAKIVPEQDMPFLADGTPVDIV 1067 Query: 1122 LNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSH 1181 LNPLGVPSRMNVGQ+ E HLG A LG K+ + + D + I S +KV G Sbjct: 1068 LNPLGVPSRMNVGQVLEAHLGIAARALGFKVATPVFDGISEETIWNYMSEAKKVDGF--- 1124 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLT 1241 T + DG D G+S LYDGLT Sbjct: 1125 --------------------------TWIGDGKDGTV------------GGKSTLYDGLT 1146 Query: 1242 GEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWC 1301 GEPF PV VG YMLKLNH+V+DK++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1147 GEPFHNPVVVGQTYMLKLNHLVADKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWA 1206 Query: 1302 IQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361 ++AYGAAY LQE+LT+KSDDV GRTR+YESIV G++T E GTPESFNVL+KEMQ+LGL++ Sbjct: 1207 LEAYGAAYTLQELLTVKSDDVQGRTRIYESIVKGDNTLEAGTPESFNVLMKEMQSLGLNV 1266 Query: 1362 DLENSRTK 1369 + + Sbjct: 1267 RPGSKDEQ 1274 >gi|303237498|ref|ZP_07324063.1| DNA-directed RNA polymerase, beta subunit [Prevotella disiens FB035-09AN] gi|302482318|gb|EFL45348.1| DNA-directed RNA polymerase, beta subunit [Prevotella disiens FB035-09AN] Length = 1296 Score = 1265 bits (3273), Expect = 0.0, Method: Composition-based stats. Identities = 560/1365 (41%), Positives = 793/1365 (58%), Gaps = 117/1365 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F PD +++Q S+ FL ++ P+ER N+GL F FPIT + Sbjct: 35 RVNFASVQSPYPYPDFLDLQLKSFRDFLQLDTPPEERKNDGLYKVFTENFPITDTRNNFV 94 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ + +CL R LTY+VPLK ++L D D I Q +++G Sbjct: 95 LEFLDYYIDPPRYSISECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 149 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 150 TIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGTVLYSARIIPFKGSWIE 206 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +S+ +IL F L Sbjct: 207 FATDINNVMYAYIDRKKKLPVTTMLRAIGFESDKDILQIFDLCEEMKVNKKNMKAAL--- 263 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+KL ++KS E V ++ Sbjct: 264 ------------------------GRKLAGNVMKSWNEDFVDEDT------------GEV 287 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E I + +L+ I S + + + D N + I NTL D + Sbjct: 288 VSIERNEVVVERETEITDDNLDIILESGVSSVLLHKDEDVANKYSIIFNTLAKDPSHSEI 347 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +L L+T DVR + Sbjct: 348 EAVNYIYRQLRNADAADDASAREVFQNLFFSDKRYDLGEVGRYRINRKLGLETDMDVRVL 407 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DII IIK L++L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 408 TKDDIIEIIKYLINLINSNATVDDIDHLSNRRVRTVGEQLANQFSIGLARMSRTIRERMN 467 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 468 VRDNEVFQPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 527 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYRKV D KV Sbjct: 528 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCLYAKINDLGFIVTPYRKVVDSKVD 587 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 + VVY++A EEE+ + Q N+ L+ DG+F V CR + +V ++ +D +P Sbjct: 588 LDNDHVVYMTAEEEEDLPVGQGNAPLNPDGTFIRSYVKCRQDADYPVVEPSQVTLMDVAP 647 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S + Sbjct: 648 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMVT 707 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ + + + Y++ KF+R+NQN ++ RP+ G Sbjct: 708 AEGDGVIEYVDATCIRILYDRTEDEEFVSFEPALKEYKISKFRRTNQNMVIDLRPICSKG 767 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V+ DI+ +G +T+ G+LALGRN+LVA+MPW GYN+ED+++ISERMV ED+ TS+H++ Sbjct: 768 QRVKAGDILTEGYATENGELALGRNLLVAYMPWKGYNYEDAVVISERMVREDILTSVHVD 827 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++DE G+I +GA V PGDI++GKI+PKGES Sbjct: 828 EYSLEVRETKRGVEEFTADIPNVSEEATKDLDENGVIRIGARVEPGDIMIGKISPKGESD 887 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F R K S ++ + Sbjct: 888 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKMFARA--VKTRESKRHDKATLA 945 Query: 966 LLARDKDDEQVILDRNIYSRLM-----EILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 L +++ + L + +L+ ++ G S + K + + + Sbjct: 946 RLDEEQEAKINDLKDLLVDKLLELTEDKLSQGIKDYSNAEIITKGSKFTIAALKNLDYEG 1005 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE ++ L + + ++ + K K I GD++P GVL++ KV++A Sbjct: 1006 IQSNGWTDDEHTNLLIQKLIMNFIRKYKQMDAQLKRKKFAITIGDELPSGVLQMAKVYIA 1065 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1066 RKRKIQVGDKLAGRHGNKGIVSKVVRAEDMPFLEDGRPVDLVLNPMGVPSRMNLGQIFEA 1125 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ + Sbjct: 1126 ILGAAGRNLGIKFATPIFDGAKLEDLKEWTDKAGLPPMCSRY------------------ 1167 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 ++DG GE FD+P TVG Y LKL Sbjct: 1168 ----------IYDGET--------------------------GERFDQPATVGITYFLKL 1191 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTIKS Sbjct: 1192 GHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTIKS 1251 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 DDV+GR++ YE+IV G G PES NVL+ E++ LGLSI L+ Sbjct: 1252 DDVIGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSIKLD 1296 >gi|182412057|ref|YP_001817123.1| DNA-directed RNA polymerase subunit beta [Opitutus terrae PB90-1] gi|177839271|gb|ACB73523.1| DNA-directed RNA polymerase, beta subunit [Opitutus terrae PB90-1] Length = 1259 Score = 1263 bits (3269), Expect = 0.0, Method: Composition-based stats. Identities = 603/1373 (43%), Positives = 834/1373 (60%), Gaps = 141/1373 (10%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R FGK E++ P+LIE+Q SY FL + +R +GL+A F+ VFPI ++ Sbjct: 6 HSERINFGKLREVLQPPNLIEIQITSYLDFLQKGVPEKQRKPQGLEAVFREVFPILSYDE 65 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 LE+VSY PK +CL +TY+VPL + LRL + IK++ I Sbjct: 66 RLTLEYVSYTLGDPKNTEIECLREGITYSVPLYVKLRL-----------REEDFIKDEEI 114 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 YMG++P++T+ G+F+I G +R+VVSQLHRSPGI F+ +GK L++ RIIPD+G Sbjct: 115 YMGEIPMVTERGSFIINGAERVVVSQLHRSPGIAFE---VTPHPNGKPLHSFRIIPDRGT 171 Query: 191 WMDIEFDSKDIIHVRIDRRR---KVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWC 246 W++++FD+ D+++V +DRRR K +T+ L A+G S+ ++L+ FY Sbjct: 172 WLEVQFDNNDLLYVYLDRRRRRRKFLITTLLRAIGYSSDIDLLNLFY------------- 218 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 + D+ + + + + L Sbjct: 219 ----------------EIKDLKVSK-------------------------ALDMENVSTL 237 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDK 366 + ED ++ + G + A + + + + +I + ++ + + A IR L D Sbjct: 238 VLVEDAIDAQKGVVLARAFEPLTKAIVRTFEKHDITTLRVIDT-AADEGAIIR-ALKKDP 295 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 ++ ++AL +IY+ +RPG+ T + A+++ LFFD +YDL VGR K+N +L L Sbjct: 296 TRNEEEALKEIYKRLRPGEPPTTANAKALLKRLFFDPKRYDLGRVGRYKVNQKLGLKVDL 355 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 + R + D++A K LV L+ G+G +DDID+LG+RRVR+VGE+L NQ R+GL R ER + Sbjct: 356 EQRILESGDVVAATKYLVRLKKGEGVVDDIDHLGSRRVRTVGELLANQCRVGLSRTERLV 415 Query: 487 KERISSVDI--DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSAL 544 +ER++ D DS+ PQ LIN K + + + +FF SQLSQ + +N L+ +TH RRLSAL Sbjct: 416 RERMTMYDQSVDSITPQKLINPKALTTVIRDFFARSQLSQFMDQINPLAEVTHKRRLSAL 475 Query: 545 GQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604 G GG+ R RAG E+RDVHP+HYGRICP ET EG NIGL++SL+++ARVN +GFIETPYR Sbjct: 476 GPGGLNRERAGFEVRDVHPSHYGRICPIETPEGPNIGLINSLSTYARVNEFGFIETPYRT 535 Query: 605 VCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 V DG+VT+ + YL+A +EE + IAQAN+ +DE G F V R G I VP + + Sbjct: 536 VKDGRVTDKIEYLTADQEEGKIIAQANAEIDEKGHFIG-KVTSRQDGNFIEVPAADVHLM 594 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D SPKQV+SIAA +IPFLE+DD+NR LMG NMQRQ VPLL++EAPFVGTG+E VA+ S Sbjct: 595 DVSPKQVISIAAGMIPFLEHDDANRALMGANMQRQGVPLLQSEAPFVGTGIEERVARDSK 654 Query: 725 AAIVAKRAGIVEQVDAIRIVIRSVEGDL----DPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 VA+ AG+V VDA RIVI +GV +Y L KF RSN TC NQ+P Sbjct: 655 IVAVAEEAGVVASVDAKRIVITRDGEMPRNLKTDPKNGVHVYELRKFMRSNAGTCFNQKP 714 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK G +V+ +IADGPSTD G++ALGRN+LVAFMPW+GYNFED++LISE+++ ED+FT Sbjct: 715 VVKQGQKVKTGQVIADGPSTDHGEMALGRNVLVAFMPWNGYNFEDAILISEKVLKEDIFT 774 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHI+EFEV ARDTKLGPEEITRDIPNV EE LKN+D G+I +GAEV PGDILVGKITP Sbjct: 775 SIHIQEFEVTARDTKLGPEEITRDIPNVGEEALKNLDHNGVIRIGAEVKPGDILVGKITP 834 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 K E+ + PEEKLLRAIFGEKA DV+DTSL VPSG +G V+DV++ +R +K + S S Sbjct: 835 KSETELAPEEKLLRAIFGEKAADVKDTSLVVPSGAAGIVMDVKVSSRVDFEKEKLSPSDR 894 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL------SSDLIS 1014 R Q++ + + + L + L IL G+ + ++ + + Sbjct: 895 RRQVKQIQEEYKTQMDKLREGLTEALSNILLGEKIPLDVINGETGEIIIPANRKITKTLL 954 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + + V+ + + Y+T LE + KI I+ G D G ++ V Sbjct: 955 RKLAAVSKHVQIDPSPVRIKIMEIIGSYQTKFDELETDRERKIGGIESGADAGDGAIKQV 1014 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A K+ ++ GDKMAGRHGNKG+V++I+ EDMPFL DGTP++I LNPLGVPSRMNVG Sbjct: 1015 KVYIAEKQKLEVGDKMAGRHGNKGVVAKIVAEEDMPFLPDGTPIEICLNPLGVPSRMNVG 1074 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVL 1194 Q+ ETHLGWAC +G K+ + + D + + S Sbjct: 1075 QVLETHLGWACKRIGLKVATPVFDGIPEKKVREYLKEAKLPSSGKSVLS----------- 1123 Query: 1195 RVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYI 1254 DG E D+ V VGYI Sbjct: 1124 -----------------DGRTGE--------------------------RLDQEVVVGYI 1140 Query: 1255 YMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEM 1314 YM+KLNH+VS K++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+ Sbjct: 1141 YMMKLNHLVSHKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWALEAYGAAHTLQEL 1200 Query: 1315 LTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 LT+KSDDV GRT++YES+V G++T + GTPESFNVL+KE+Q+LGL I L S Sbjct: 1201 LTVKSDDVQGRTKIYESLVKGDNTLQAGTPESFNVLIKEIQSLGLDIKLNKSD 1253 >gi|15606949|ref|NP_214331.1| RNA polymerase beta subunit [Aquifex aeolicus VF5] gi|6226042|sp|O67762|RPOB_AQUAE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|2984192|gb|AAC07723.1| RNA polymerase beta subunit [Aquifex aeolicus VF5] Length = 1468 Score = 1263 bits (3268), Expect = 0.0, Method: Composition-based stats. Identities = 610/1477 (41%), Positives = 873/1477 (59%), Gaps = 144/1477 (9%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 RKFFG+ E+++ P L+ + K S+++F+ + + P +R N GL+ F++ FP + Sbjct: 8 RKFFGRRFEVLEPPYLLSIPKNSFENFVQLKVNPYKRKNVGLEHIFRTSFPFKDPDENFI 67 Query: 74 LEFVSYEFD--------------------------------PPKFDVDDCLWRDLTYAVP 101 LE++ YE KF ++C + LTY+ P Sbjct: 68 LEYLGYEIGDWECNRCGYKPKDDLLGGWDVDCPQCGAKLVYKEKFTPEECKLKGLTYSAP 127 Query: 102 LKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSP 161 L++ L+L + + ++ + +Y G++PLMT+ G+F+I G +RI+++QL RS Sbjct: 128 LRVMLQLKAKTKNGY------REFPPKKVYFGEIPLMTETGSFIINGTERIIINQLIRSS 181 Query: 162 GIHFDH--DKGRASLSGKLLYACRIIPDQGLWMDIEFD-SKDIIHVRIDRRRKVPVTSFL 218 G+ FD +K + + ++LY IIPD+G ++ E + D+I RIDR+ K+ T+ L Sbjct: 182 GVFFDEKEEKQKDATITRILYRGSIIPDKGSRVEFELSGATDLISARIDRK-KLSATAVL 240 Query: 219 MALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVS----SSLVDIDTGEQV 273 A G+++ +IL FY + D + + + + +++ Sbjct: 241 RAFGLETAYDILKYFYEDVRKFIVKDKYLYDAQTGEEFTPEDLEHHYIFAIIKFRGKLVG 300 Query: 274 IESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSL 333 S K + I + +++ + E+ + + + Sbjct: 301 FASSK---------------ERDFIEERYIEEWEDLVRLLDDDRIEVL--SVTAVPRDVV 343 Query: 334 EEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDA-LLDIYRVMRPGDVSTFSV- 391 + I L D+ + R+ + +D L+++Y+ +R + T + Sbjct: 344 IKSP-YGKSLIDTLANDTSPKDVDKRSPVKVPAEYTLRDYGLMEMYKRLRHIEAITMEID 402 Query: 392 -----AESMFNFLFFDSDKYDLSTVGRVKMNMRLNL------------------------ 422 A FN F D +YDLS VGRVK+N +++ Sbjct: 403 SVIERARIFFNVFFRDLKRYDLSRVGRVKINAKVHRIPKVLKPADVDLLDQLPPLALAED 462 Query: 423 -----------------------------DTPDDVRHIRKEDIIAIIKILVDLRNGKGTI 453 T D+ R I D++ I+K L+DLR+G+ Sbjct: 463 YGEYKAGTRVTKDLLKELFKQYKEIKVKDYTEDEARFILPIDLVNILKYLIDLRHGRVKK 522 Query: 454 DDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI--SSVDIDSVMPQDLINAKPVVS 511 DDI +LGNRRVRSVGE+L+NQ RLG+ +ME+ ++R + + + PQD IN + V + Sbjct: 523 DDIAHLGNRRVRSVGELLENQARLGIAKMEKVFRDRSAVINPEQPDLKPQDFINPRYVTT 582 Query: 512 AVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICP 571 A+ +F + QLSQ ++ N LS +TH RRLSALG GG+ R A E+RDVHP+HYGRICP Sbjct: 583 AITDFLKTGQLSQYLDNTNPLSELTHKRRLSALGPGGLTRESAKFEIRDVHPSHYGRICP 642 Query: 572 AETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQAN 631 ET EG NIGLV+S T +ARVN YGF+ TPYRKV +GKVT+ + +L+A EEEN IAQ + Sbjct: 643 IETPEGQNIGLVTSPTVYARVNEYGFLITPYRKVENGKVTDKIEWLAAYEEENYVIAQ-S 701 Query: 632 SSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVL 691 + DE+G E + R + LV E++++ID SP+QV+S ++SLIPFLE+DD+NR L Sbjct: 702 TPTDEEGRLKAEFILARHKNDIRLVKPEQVEYIDVSPRQVISPSSSLIPFLEHDDANRAL 761 Query: 692 MGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-- 749 MG NMQRQAVPL+ +AP +GTGME +A+ S A +VAKR G+VE+VD+ +I+IR Sbjct: 762 MGSNMQRQAVPLIFTQAPLIGTGMEKKIARDSHAVVVAKRGGVVEEVDSSKIIIRVNPEE 821 Query: 750 -GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALG 808 DP G+DIY L KFQR+NQ TCVNQRP+V+ G++V + IIADG STD G+LALG Sbjct: 822 INFDDPLDIGIDIYELRKFQRTNQKTCVNQRPIVRKGEKVEKGQIIADGHSTDRGELALG 881 Query: 809 RNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNV 868 +++LVAFMPW GYNFED+++ISER+V EDV+TSIHIEE EV AR+TK+G EEITR IP V Sbjct: 882 KDVLVAFMPWRGYNFEDAIVISERLVKEDVYTSIHIEELEVEARETKVGEEEITRQIPGV 941 Query: 869 SEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTS 928 E L ++DE GI+ VG V PGDILVGK+TPKGE+ +TPEEKLL+AIFGEK DV+D S Sbjct: 942 PERALAHLDEHGIVRVGTYVKPGDILVGKVTPKGETRLTPEEKLLQAIFGEKTRDVKDAS 1001 Query: 929 LRVPSGVSGTVVDVRIFNRHGI-DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLM 987 LR P GV G V+DV++F R G K+ + VERE++E L ++ + ++ ++ L Sbjct: 1002 LRCPPGVEGIVIDVQVFTRKGTGKKDMLAEKVEREELEALEQELEKKKNLIITGRDKVLK 1061 Query: 988 EILCGQNAVS----GPKGFKKSTVLSSDLISEYPRSQWWQFA--VQDEKVQRNVESLKVQ 1041 ++ G+ G K KK TV+ + E+ + +DE + R + + + Sbjct: 1062 GLVLGRKVEKDAKVGRKTVKKGTVIDEKVFEEFVNYILGRPENFFEDEDLIRKIREIAER 1121 Query: 1042 YETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVS 1101 T +L ++ K E + D+PPGV+ +VKVF+A KR I+ GDKMAGRHGNKG++S Sbjct: 1122 TRTQIEMLNKVYEEKKETLLKRRDLPPGVITLVKVFIANKRKIKVGDKMAGRHGNKGVIS 1181 Query: 1102 RILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKA 1161 +LP EDMPFL DGTPVDIVLNPLGVPSRMNVGQI ETHLGWA LGKKI +I + Sbjct: 1182 VVLPVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAKELGKKIGEMIEKGRD 1241 Query: 1162 NGDISPLRSFL-----EKVIGTGSHTEKISDYDDDSVLRVAEQW-KSGVPVSTPVFDGAD 1215 I+ + + E ++ ++ V + + G+P++TP F+GA+ Sbjct: 1242 RKAITEYLKEIFAIGDKDGENAKFIEEFLNSLSEEEFWSVVRDYAERGIPMATPAFEGAE 1301 Query: 1216 EEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSY 1275 E+AI +L+ A L E+G++ LYDG TGEPFD VTVGY++MLKL HMV DK++AR+TG Y Sbjct: 1302 EDAIKELLKKAGLPENGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDKIHARATGPY 1361 Query: 1276 SLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAG 1335 SLVTQQPLGG++ GGQRLGEMEVW ++A+GAAY LQEMLT+KSDDV GRT+VYE+IV G Sbjct: 1362 SLVTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDVEGRTKVYEAIVKG 1421 Query: 1336 NDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 T+ G PESF VLV+E++ALGL++ N K Sbjct: 1422 KYTYTPGIPESFKVLVRELKALGLNVKCLNGEEKPCD 1458 >gi|225012654|ref|ZP_03703089.1| DNA-directed RNA polymerase, beta subunit [Flavobacteria bacterium MS024-2A] gi|225003187|gb|EEG41162.1| DNA-directed RNA polymerase, beta subunit [Flavobacteria bacterium MS024-2A] Length = 1269 Score = 1261 bits (3264), Expect = 0.0, Method: Composition-based stats. Identities = 568/1369 (41%), Positives = 803/1369 (58%), Gaps = 116/1369 (8%) Query: 10 LGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 R F PD +++Q S+ F + DER EGL FK FPIT Sbjct: 4 KQSQRTNFAGAKHTPMYPDFLDIQIKSFQDFFQLETKSDERNEEGLFNTFKENFPITDTR 63 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEF+ Y DPP++ + +C+ R LTY+VPLK L+L D + + Q Sbjct: 64 NQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIV-----QD 118 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +++G +P MT GTFVI G +RIVVSQLHRSPG+ F +G LY+ R+IP +G Sbjct: 119 VFLGTIPYMTPSGTFVINGAERIVVSQLHRSPGVFFGQSF---HANGTKLYSARVIPFKG 175 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ D +++ IDR++K+PVT+ A+G + + +IL F Sbjct: 176 SWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGFEHDRDILEIF---------------- 219 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++ + TG + + G+KL + +LK+ E V Sbjct: 220 ----------DLAEEIKVSKTGIKKV-LGRKLAARVLKTWHEDFVDEDT----------- 257 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKN 367 ++++ E EI I+ V++++ +EEI + ++ I + VD +++ A I NTL D Sbjct: 258 -GEVISIERNEIIIDRDTVLEKEHIEEILEASVKTILLHKVDAHMSDYAIIYNTLQKDPT 316 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 K+A+ IYR +R + A + + LFF +Y+L VGR +MN +L LD D Sbjct: 317 NSEKEAVEHIYRQLRNAEPPDEDTARGIIDKLFFSDQRYNLGEVGRYRMNKKLGLDVEMD 376 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 + + K DII IIK L++L N K IDDID+L NRRVR+VGE L +Q+ +GL RM R+I+ Sbjct: 377 KQVLTKLDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSSQFGVGLARMARTIR 436 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER++ D + P DLINAK + S + FF ++QLSQ + N L+ ITH RRLSALG G Sbjct: 437 ERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPG 496 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G++R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA+VN GFIETPYRKV + Sbjct: 497 GLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVFAKVNNLGFIETPYRKVEN 556 Query: 608 GKV-TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 G + + +YLSA EEEN+ I QAN + D+ G +E V R + +V +K+++ D Sbjct: 557 GVINLKETIYLSAEEEENQLITQANINFDKAGKILDEKVIARDQADFPVVTPDKVNYTDV 616 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 +P Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL+ EAP VGTG+E VA S Sbjct: 617 APNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAPIVGTGLEKQVASDSRVL 676 Query: 727 IVAKRAGIVEQVDAIRIVIRSV---EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 I A+ G+VE VDA +I I+ + DL Y L+KF+++NQ TC+N +P+++ Sbjct: 677 INAENDGVVEYVDANKITIKYDFSEKDDLISFDGDTKSYNLIKFRKTNQGTCINLKPIIQ 736 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 GD V + ++ G +T+ G+LALGRN+ VAFMPW GYNFED+++ISE++V +D+FTSIH Sbjct: 737 KGDRVTKGQVLCQGYATEAGELALGRNLKVAFMPWKGYNFEDAIVISEKVVRQDIFTSIH 796 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 I+E+ + RDTKLG EE+T DIPNVSEE ++DE G+I +GAEVNPGDIL+GKITPKGE Sbjct: 797 IDEYSLDVRDTKLGTEELTNDIPNVSEEATSDLDENGMIRIGAEVNPGDILIGKITPKGE 856 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 S TPEEKLLRAIFG+KA DV+D SL+ P + G V+D ++F R K++R + ++++ Sbjct: 857 SDPTPEEKLLRAIFGDKAGDVKDASLKAPPSLRGVVIDKKLFTR--SVKDKRKRNQDKQE 914 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPR 1018 ++ L D + L + +L I+ G+ G + K + L+S Sbjct: 915 LDALEDAFDVKSEALKTVLVEKLFTIVNGKTCQGVQNDLGEEVLPKGKKYTLKLLSGVED 974 Query: 1019 SQWWQF--AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 + + L Y+ ++ L+ + + I GD++P G+ ++ K+ Sbjct: 975 YTHLTKGSWTTTSETNDLIADLIHNYKIKENDLQGALRREKFTISVGDELPAGIKKLAKI 1034 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 ++A KR ++ GDKMAGRHGNKGIV+RI+ E+MPFL+DGTPVDIVLNPLGVPSRMN+GQI Sbjct: 1035 YIAKKRKLKVGDKMAGRHGNKGIVARIVREEEMPFLEDGTPVDIVLNPLGVPSRMNIGQI 1094 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 +ET LGWA LG+K + I D I+ L + S+ + Sbjct: 1095 YETVLGWAGQNLGEKYATPIFDGATIEQINALTEKGNVPLYGHSYLYDGGTGER------ 1148 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 FD + ML++ G++ Sbjct: 1149 --------------FDQPATVGVIYMLKL--------------------------GHM-- 1166 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 V DK+++RS G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+ LQE+LT Sbjct: 1167 ------VDDKMHSRSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLQEILT 1220 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 +KSDDV+GR + YE+IV G+ E G PESFNVL+ E++ LGL I LE Sbjct: 1221 VKSDDVIGRAKTYEAIVKGDTLPEPGLPESFNVLMHELKGLGLDIRLEE 1269 >gi|194333132|ref|YP_002014992.1| DNA-directed RNA polymerase subunit beta [Prosthecochloris aestuarii DSM 271] gi|194310950|gb|ACF45345.1| DNA-directed RNA polymerase, beta subunit [Prosthecochloris aestuarii DSM 271] Length = 1301 Score = 1258 bits (3256), Expect = 0.0, Method: Composition-based stats. Identities = 587/1411 (41%), Positives = 821/1411 (58%), Gaps = 172/1411 (12%) Query: 11 GRVRK--FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF 68 RK F K I+D PDL++VQ S++ F+ ++ ++R ++GL+ +S FPIT Sbjct: 6 KTPRKCIAFSKIQSIVDPPDLLQVQLDSFNTFIQDSVPLEKRKDQGLEKVLRSAFPITDT 65 Query: 69 SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 G +LE++SY FD PK+ V++C+ R LTY V LK+ L+L D + T K +Q Sbjct: 66 RGLYLLEYISYSFDRPKYSVEECIERGLTYDVSLKVKLKLSYKDEPDETDWKET---IQQ 122 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 +Y+G +P MT GTF++ G +R+VV+QLHRSPG+ F +GK +Y+ +I+P + Sbjct: 123 EVYLGRIPYMTGRGTFIVNGAERVVVAQLHRSPGVVFSE---AVHPNGKKMYSAKIVPTR 179 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWCF 247 G W++ + D + I+V ID+++ V++ L A+G +E IL F + + Sbjct: 180 GSWIEFQTDINNQIYVYIDQKKNFLVSALLRAIGFAKDEDILGLFDMVEEVPVKSNK--- 236 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 D ++G ++S ++D+ TGE + + +T +L + G K + I Sbjct: 237 ----KDYLIGKNLASDIIDMQTGEV-VSARTAITEDILDQITAAGYKSVSIIR------- 284 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 DE L++ + I NT++ D + Sbjct: 285 -------------------AADENGLDK--------------------SIITNTILNDSS 305 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD---- 423 ++AL +Y +R + A S FF+ KYDL VGR ++N +L + Sbjct: 306 ATEEEALEIVYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRINKKLGREQQEF 365 Query: 424 --------------------------------TPDDVRHIRKEDIIAIIKILVDLRNGKG 451 +D+ + DII++I L+ L NG+ Sbjct: 366 MDYIGGNPELKQLSDAIYEKILLTIQSYSDEPVGEDIMVLTHYDIISVIYYLIKLVNGQA 425 Query: 452 TIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVS 511 +DD+D+L NRRVR+VGE L Q+ +GL R+ ++++E+++S D D + P DLINA+ V S Sbjct: 426 EVDDVDHLANRRVRTVGEQLAAQFVIGLARLGKNVREKLNSRDSDKIAPADLINARTVSS 485 Query: 512 AVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICP 571 V FF +SQLSQ + N L+ +T+ RR+SALG GG+ R RAG E+RDVH THYGR+CP Sbjct: 486 VVSSFFATSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCP 545 Query: 572 AETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQAN 631 ET EG NIGL+SSL+ +A +N GFI+TPYR V G VT++V+ LSA +EEN+ N Sbjct: 546 IETPEGPNIGLISSLSVYAEINDKGFIQTPYRVVTKGVVTDEVLMLSAEDEENKITVPVN 605 Query: 632 SSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVL 691 LDE+ E V R G+ +V E++D++D SP Q+VS AA+LIPFLE+DD NR L Sbjct: 606 VPLDENRKIASETVQARTKGDYPVVTAEEVDYMDVSPVQIVSAAAALIPFLEHDDGNRAL 665 Query: 692 MGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGD 751 MG NMQRQAVPLL A+AP VGTGME+ VA+ S + IVA+ G+VE V A I +R Sbjct: 666 MGANMQRQAVPLLVADAPIVGTGMEAKVARDSRSVIVAEGPGVVESVTAESIRVRYDVEG 725 Query: 752 LDPS-------TSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGD 804 + GV Y L+KF+RSNQ+TC+ Q+P V G + + D+IADG ST+ G+ Sbjct: 726 QGDNHVVMLDPDEGVKTYTLIKFKRSNQDTCITQKPFVYEGQVLAKGDVIADGSSTESGE 785 Query: 805 LALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRD 864 LALG+N+LVAFMPW GYNFED++++SER+V +DV TSIHI EFE RDTK G E+ TRD Sbjct: 786 LALGKNVLVAFMPWRGYNFEDAIVLSERLVYDDVLTSIHIHEFEANVRDTKRGEEQFTRD 845 Query: 865 IPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDV 924 I NVSE+ L+N+DE GII +GAEV DILVGKITPKGES TPEEKLLRAIFG+K+ DV Sbjct: 846 IYNVSEDALRNLDENGIIRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDV 905 Query: 925 RDTSLRVPSGVSGTVVDVRIFNRH---GIDKNERSISVEREQIELLARDKDDEQVILDRN 981 +D S+ VP+G+ G V+ ++F+R G+D ERS ++E+ E D + Sbjct: 906 KDASMHVPAGMKGIVIKTKLFSRKKKVGMDVKERSEAIEK-LFERKEMDLRSRFSKWLKK 964 Query: 982 IYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP------RSQWWQFAVQDEKVQRNV 1035 + ++ G G ++ + L+S++ + ++D KV NV Sbjct: 965 LLE--GKVSTGVFNDKGKAIIPPGSLYDAGLLSKFSGLGFLETVDLSKGFIEDTKVNANV 1022 Query: 1036 ESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHG 1095 L +Y D N+ K+ GD++PPG+ + KV++A KR IQ GDKMAGRHG Sbjct: 1023 VQLIKEYRLMLKDHADERDNEKYKLNVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHG 1082 Query: 1096 NKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSL 1155 NKG+V +ILP EDMPF+ DGTPVDIVLNPLGVPSRMN+GQ++ET LGWA LG K+ Sbjct: 1083 NKGVVGKILPIEDMPFMADGTPVDIVLNPLGVPSRMNIGQLYETSLGWAGKSLGVNFKTP 1142 Query: 1156 INDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGAD 1215 I D ++ S K+G+P Sbjct: 1143 IFDGATYEEVQEQLS------------------------------KAGLP---------- 1162 Query: 1216 EEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSY 1275 G+ LYDG TGE FD VTVGYIYMLKL+H+V DK++ARSTG Y Sbjct: 1163 --------------SHGKVRLYDGRTGEAFDDEVTVGYIYMLKLSHLVDDKIHARSTGPY 1208 Query: 1276 SLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAG 1335 SL+TQQPLGGK+ GGQR GEMEVW ++AYGAA +L+EMLT+KSDDV+GR + YE+IV G Sbjct: 1209 SLITQQPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKG 1268 Query: 1336 NDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 + GTPESFNVLV+E+Q LGL I +++ Sbjct: 1269 QNLPNPGTPESFNVLVRELQGLGLEIRIDDK 1299 >gi|46446238|ref|YP_007603.1| DNA-directed RNA polymerase subunit beta [Candidatus Protochlamydia amoebophila UWE25] gi|81627411|sp|Q6MDM1|RPOB_PARUW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|46399879|emb|CAF23328.1| probable DNA-directed RNA polymerase, beta chain [Candidatus Protochlamydia amoebophila UWE25] Length = 1254 Score = 1257 bits (3252), Expect = 0.0, Method: Composition-based stats. Identities = 604/1375 (43%), Positives = 845/1375 (61%), Gaps = 149/1375 (10%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R+ F EIID+P+LIE+Q SY+ FL + PDER N GLQ F +FPI ++ + Sbjct: 8 RESFNDKEEIIDLPNLIEIQIKSYNQFLQADKFPDERENIGLQEVFTEIFPIKSYDEKTI 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+SY PK++ ++C+ R +TY V LK+ RL + TG IKE+ +YMG Sbjct: 68 LEFLSYNLGVPKYNPEECIRRGITYNVTLKVKFRLT-----DETG------IKEEEVYMG 116 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P+MT GTF++ G +R+VVSQLHRSPGI F+ ++ G ++Y+ RIIP +G W++ Sbjct: 117 TIPVMTDKGTFIVNGAERVVVSQLHRSPGICFEQER---HSRGNVIYSFRIIPYRGSWLE 173 Query: 194 IEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPL 249 FD+ D+IH+ IDR RRK+ T+F+ ALG S +I+ F+ Sbjct: 174 GAFDTNDLIHIYIDRKKRRRKILATTFIRALGYSSNSDIIEEFF---------------- 217 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 T+ K EK L G +A Sbjct: 218 -------------------------------TTRKYKIKNEKEFAK-------LVGKILA 239 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 +D+V+ E+G ++ +A + + L+ I + I I I + + + + L D Sbjct: 240 QDVVDEESGLVFGKASEKLTTAMLKRIVDAGIDVIRI--AEDADETSPVIKMLAKDPTDS 297 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 + AL D YR +RPG+ +T S A S LFFD +Y+L VGR K+N +L + D+ Sbjct: 298 YESALKDFYRKIRPGEPATLSNARSAIMRLFFDPKRYNLGRVGRYKLNSKLGCEINDEKL 357 Query: 430 ---HIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 + KED+I +K L+ L++G + +IDDID+LGNRRVRSVGE+++NQ R+GL RME+ Sbjct: 358 QTVTLDKEDVIGALKYLIMLKSGSEEASIDDIDHLGNRRVRSVGELIQNQCRIGLARMEK 417 Query: 485 SIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 I+ER++ D D++ P +++AK + + +FF SQLSQ + N ++ +TH RRLS Sbjct: 418 IIRERMNLFDFSSDTLTPGKIVSAKGLSGVLKDFFGRSQLSQFMDQTNPIAELTHKRRLS 477 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 +LG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL+SSL+SFA++N +GFIETPY Sbjct: 478 SLGPGGLNRDRAGFEVRDVHTSHYGRICPIETPEGPNIGLISSLSSFAKINEFGFIETPY 537 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +G VT+++ Y++A +EE IAQA++ LDE F E + + R GE+ + + Sbjct: 538 RIVREGVVTDEIEYMTADQEEQCVIAQASAPLDEYHMFAEPICWARYKGEQFETDTKNVT 597 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQ VPLLK AP VGTG+E+ A+ Sbjct: 598 HMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQGVPLLKPTAPIVGTGLEARAARD 657 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA ++A G+V+ VD ++IVI + L+ Y L KF RSN TC+NQRPL Sbjct: 658 SGAVLIAHEDGVVDYVDGLKIVISPDDNRLEK-----RTYLLKKFIRSNAGTCINQRPLC 712 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD+++ D+IADGP+TD G++ALGRN+LVAFMPW GYN+ED+++ISE+++ ED +TS+ Sbjct: 713 HVGDKIKAGDVIADGPATDKGEVALGRNVLVAFMPWFGYNYEDAIIISEKLLREDYYTSL 772 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +IEEFE+ ARDTKLG EEITRDIPNVSEE L+N+++ GII +GAEV PGD LVGKITPK Sbjct: 773 YIEEFELTARDTKLGKEEITRDIPNVSEETLRNLNDDGIIRIGAEVKPGDTLVGKITPKS 832 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVER 961 E+ + PEE+LLRAIFG+KA DV+D SL P G G V+DV++F+R + K + + E Sbjct: 833 ETELAPEERLLRAIFGDKASDVKDASLIAPPGTEGVVMDVKVFSRRDRLSKTDDELVEEA 892 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG-------FKKSTVLSSDLIS 1014 +++ + R+ Q L + R+ +L + A + +++ DLI Sbjct: 893 SKLKDIQREYKSNQAQLRTEKHERVGALLLNETAPGNIVHRRTAEIIVDEGDLITQDLIE 952 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLRV 1073 + + + + + + YE + +E ++K ++E ++ GD D+ PGV+R Sbjct: 953 ALEKESVEDLLMPENDIYTTLRQILHDYEIALQTVETQYKTQLEFMRKGDTDLDPGVIRQ 1012 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL G ++I+LNPLGVPSRMN+ Sbjct: 1013 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLSTGQTIEIILNPLGVPSRMNM 1072 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQ+FETHLG A G +KS + + I + Sbjct: 1073 GQLFETHLGIAAKHTGITVKSPVFEGFPEEKIWEMMK----------------------- 1109 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 K+G+P E G+ LYDG +GE FD V VGY Sbjct: 1110 -------KAGLP------------------------EDGKFFLYDGCSGERFDNSVVVGY 1138 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL+H+V+DK++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW +AYGAA++LQE Sbjct: 1139 IYMLKLSHLVADKIHARAVGPYSLVTQQPLGGKAQMGGQRFGEMEVWAAEAYGAAHLLQE 1198 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 MLT+KSDDV GRTR+YESIV G + ++GTPESFNVL+KEMQ LGL++ E Sbjct: 1199 MLTVKSDDVAGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLNVYTEAVDD 1253 >gi|119356080|ref|YP_910724.1| DNA-directed RNA polymerase subunit beta [Chlorobium phaeobacteroides DSM 266] gi|158512597|sp|A1BD23|RPOB_CHLPD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|119353429|gb|ABL64300.1| DNA-directed RNA polymerase subunit beta [Chlorobium phaeobacteroides DSM 266] Length = 1312 Score = 1256 bits (3251), Expect = 0.0, Method: Composition-based stats. Identities = 582/1405 (41%), Positives = 819/1405 (58%), Gaps = 172/1405 (12%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 F K +ID PDL++VQ S+ +F+ ++ +R ++GL+ +S FPIT G +LE Sbjct: 22 DFSKIQSVIDPPDLLKVQLDSFHNFIQDSVPLAKRRDQGLERVLRSAFPITDTRGLYLLE 81 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 ++SY FD PK+ V+DC+ R LTY V LK+ L+L D + K +Q +Y+G + Sbjct: 82 YISYSFDKPKYTVEDCIERGLTYDVSLKVKLKLSYKDEPDEADWKET---IQQEVYLGRI 138 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 P MT+ GTF++ G +R+VV+QLHRSPG+ F +GK +Y+ +I+P +G W++ + Sbjct: 139 PYMTERGTFIVNGAERVVVAQLHRSPGVVFSE---AIHPNGKKMYSAKIVPTRGSWIEFQ 195 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWCFPLSAADL 254 D + I V ID+++ VT+ L A+G +E IL F + Sbjct: 196 TDINNQIFVYIDQKKNFLVTALLRAIGFAKDEDILGLFDLVEEVKITSAK-------KEQ 248 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 ++G ++S +VD+ TGE + + +T ++ + G K + + Sbjct: 249 LIGQYLASDIVDMQTGEV-VSARTAITEDIVDQIIAAGYKSVRVMKSF------------ 295 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 D + + I NT++ D + ++AL Sbjct: 296 --------------------------------SGNDKGPDKSIIINTILNDNSATEEEAL 323 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD-------- 426 +Y +R + A S FF+ KYDL VGR ++ +L+ + + Sbjct: 324 EIVYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIRKKLSKEFEELHGYLDGQ 383 Query: 427 ----------------------------DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDN 458 D+ + DIIA+I L+ L NG+ +DD+D+ Sbjct: 384 PELKKLSDTIYEKILHTIQSFSDEPIGGDILVLTHYDIIAVIYYLIKLVNGQAEVDDVDH 443 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 L NRRVRSVGE L Q+ +GL RM ++++E+++S D D + P DLINA+ V S V FF Sbjct: 444 LANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDSDKIAPSDLINARTVSSVVSSFFA 503 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 +SQLSQ + N L+ +T+ RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG Sbjct: 504 TSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGP 563 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 NIGL+SSL+ +A +N GFI+TPYR V +G VT+ V+ LSA +EEN+ + LDE+ Sbjct: 564 NIGLISSLSVYAEINDKGFIQTPYRVVTNGVVTDTVLMLSAEDEENKITVPVSIPLDENM 623 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 E V R G+ LVP E ++++D SP Q+VS AA+LIPFLE+DD NR LMG NMQR Sbjct: 624 KIAIESVQARTKGDYPLVPAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQR 683 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG-------D 751 QAVPLL AEAP VGTGMES VA+ S + I+A+ GIV+ V A I +R Sbjct: 684 QAVPLLTAEAPIVGTGMESKVARDSRSVILAEGDGIVDDVTAEYIKVRYDIDADTDVRLS 743 Query: 752 LDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 L G+ Y+L+KF+RSNQ+TC++Q+PL+ +G V + D++AD ST+ G+LALG+N+ Sbjct: 744 LLDPDEGLKTYKLIKFKRSNQDTCISQKPLIHIGQRVSKGDVLADSSSTENGELALGKNV 803 Query: 812 LVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE 871 LVAFMPW GYNFED++++SER+V +DVFTSIHI EFE RDTK G E+ TRDI NVSE+ Sbjct: 804 LVAFMPWRGYNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDIYNVSED 863 Query: 872 GLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRV 931 L+N+DE GI+ +GAEV DILVGKITPKGES TPEEKLLRAIFG+K+ DV+D S+ V Sbjct: 864 ALRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHV 923 Query: 932 PSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILC 991 P+G+ G V+ ++F+R ++ +E+IE+L + D ++ L + RL ++L Sbjct: 924 PAGMKGIVIKTKLFSR-----KKKVGLDIKEKIEILEKKYDYKEYDLRKKFLKRLKQLLE 978 Query: 992 GQNAVSGPKGFKKSTVLSSDLISE-----------YPRSQWWQFAVQDEKVQRNVESLKV 1040 G+ + K V + + + + Q EKV NV L Sbjct: 979 GKTSTGIYSDKGKLLVAEDAVYDDSVLERFTAIPFLESIDFVKGVTQSEKVNENVMLLVK 1038 Query: 1041 QYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIV 1100 ++ L D N+ K+ GD++PPG+ + KV++A KR IQ GDKMAGRHGNKG+V Sbjct: 1039 EFRLKLKDLNDERDNEKYKLNVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVV 1098 Query: 1101 SRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK 1160 +ILP EDMPF+++G PVDIVLNPLGVPSRMN+GQ++ET LGWA LG K K+ I + Sbjct: 1099 GKILPIEDMPFMENGKPVDIVLNPLGVPSRMNIGQLYETSLGWAGKELGVKFKTPIFNGA 1158 Query: 1161 ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAIN 1220 ++ K+G+P Sbjct: 1159 TYQEVQQELE------------------------------KAGLP--------------- 1173 Query: 1221 SMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQ 1280 G+ LYDG TGE FD VT+GYIYMLKL+H+V DK++ARSTG YSL+TQ Sbjct: 1174 ---------SHGKVSLYDGRTGEQFDDEVTIGYIYMLKLSHLVDDKIHARSTGPYSLITQ 1224 Query: 1281 QPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFE 1340 QPLGGK+ GGQR GEMEVW ++AYGAA +L+EMLT+KSDDV+GR + YE+IV G + E Sbjct: 1225 QPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPE 1284 Query: 1341 TGTPESFNVLVKEMQALGLSIDLEN 1365 GTPESFNVLV+E+Q LGL I +++ Sbjct: 1285 PGTPESFNVLVRELQGLGLEIRIDD 1309 >gi|282889742|ref|ZP_06298281.1| hypothetical protein pah_c004o107 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500316|gb|EFB42596.1| hypothetical protein pah_c004o107 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 1251 Score = 1256 bits (3251), Expect = 0.0, Method: Composition-based stats. Identities = 610/1372 (44%), Positives = 846/1372 (61%), Gaps = 149/1372 (10%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + EIID+P+LIE+Q SY+ FL N+ P+ER N GLQ F +FPI ++ Sbjct: 8 RVSFVEKEEIIDLPNLIEIQVKSYNQFLQANLFPNERENIGLQEVFNEIFPIKSYDEKTT 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+SY PK+ D+C+ R ++Y V LK+ RL + TG IKE+ +YMG Sbjct: 68 LEFLSYSLGVPKYIPDECIRRGISYNVTLKVKFRLT-----DETG------IKEEEVYMG 116 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P+MT+ GTF+I G +R+VVSQLHRSPGI F+ ++ + G +Y+ RIIP +G W++ Sbjct: 117 TIPVMTEKGTFIINGAERVVVSQLHRSPGICFEQER---HMRGNWIYSFRIIPYRGSWLE 173 Query: 194 IEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPL 249 FDS D+IH+ IDR RRK+ T+F+ ALG + +I+ F+ Sbjct: 174 GAFDSNDLIHIYIDRKKRRRKILATTFIRALGYSTNADIIEEFFSTRKIKL--------- 224 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 K L D L G +A Sbjct: 225 ---------KNDKDLSD------------------------------------LVGKILA 239 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 +D+++ E+G ++ +AG+ + L+ + + I I I + + + I L D Sbjct: 240 QDVLDEESGTVFGKAGEKLTTAMLKRMIDAGIDVIRI--AEDADEASPIIKMLSKDPTDS 297 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 + AL D YR +RPG+ +T S A S LFFD +Y+L VGR K+N +L L+ D+ Sbjct: 298 YESALKDFYRKIRPGEPATLSNARSAIMRLFFDPKRYNLGRVGRYKLNSKLGLEIGDEQL 357 Query: 430 ---HIRKEDIIAIIKILVDLRNGKG--TIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 + KED+I +K L+ L+ K +DDID+LGNRRVRSVGE+++NQ R+GL RME+ Sbjct: 358 KTVTLTKEDVIGALKYLISLKQNKEDTYVDDIDHLGNRRVRSVGELIQNQCRIGLARMEK 417 Query: 485 SIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 I+ER++ D D++ P +++AK + + +FF SQLSQ + N ++ +TH RRLS Sbjct: 418 IIRERMNLFDFSSDTLTPGKIVSAKGLSGVLKDFFGRSQLSQFMDQTNPIAELTHKRRLS 477 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 +LG GG+ R RAG E+RDVHP+HYGRICP ET EG NIGL++SL+SFA++N +GFIETPY Sbjct: 478 SLGPGGLNRDRAGFEVRDVHPSHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPY 537 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 V +G VT+++ Y++A +EE IAQA++ LDE F E + + R GE + + KI Sbjct: 538 LIVREGVVTDEIEYMTADQEERCVIAQASAVLDEFKMFAEPICWARWRGEPLEIESSKIT 597 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQ VPLL+ +AP VGTG+E+ A+ Sbjct: 598 HMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQGVPLLRPQAPIVGTGLEARAARD 657 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA ++A GIVE VD ++IVI + LD Y L KF RSN TC+NQ+PL Sbjct: 658 SGAVVIAHEDGIVEYVDGLKIVISPTDNRLDK-----KTYYLKKFLRSNAGTCINQQPLC 712 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +GDEV+ D+IADGP+TD G++ALGRN+LVAFMPW GYN+ED+++ISE+++ ED +TSI Sbjct: 713 NIGDEVKAGDVIADGPATDKGEVALGRNVLVAFMPWFGYNYEDAIIISEKLLREDAYTSI 772 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +IEEFE+ ARDTKLG EEITRDIPNVS+E L N+ E GII +GAEV PGDILVGKITPK Sbjct: 773 YIEEFELTARDTKLGKEEITRDIPNVSDEALLNLGEDGIIRIGAEVKPGDILVGKITPKS 832 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVER 961 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K + + E Sbjct: 833 ETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRRDRLSKTDDELVEEA 892 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-------KSTVLSSDLIS 1014 +++ + ++ +Q L ++ +L + A K + +++ DLI Sbjct: 893 SRLKDIQKEFKQKQSELRTERREKIGALLLNETAPGTIVHRKTAEVVIEEGMLITQDLIE 952 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLRV 1073 E + + D ++ ++ YE + LE ++K ++E ++ GD D+ PG++R Sbjct: 953 ELEKENVEDLLMPDNQIYNALKQFLHDYEIATQTLETQYKTEVEFMRKGDTDLDPGIIRQ 1012 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA KR +Q GDKMAGRHGNKG+VSRI+P DMPFL +G ++I+LNPLGVPSRMN+ Sbjct: 1013 VKVYVASKRKLQVGDKMAGRHGNKGVVSRIVPEADMPFLPNGESIEIILNPLGVPSRMNM 1072 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQ+FETHLG+A G +KS + + I + Sbjct: 1073 GQLFETHLGFAAKKQGINVKSPVFEGFPENKIWEMME----------------------- 1109 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 K G+P G+ L+DG TG+ FD V VGY Sbjct: 1110 -------KQGMP------------------------SDGKFYLHDGCTGDRFDSSVVVGY 1138 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IY+LKL+H+V+DK++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW +AYGAA++LQE Sbjct: 1139 IYILKLSHLVADKIHARAVGPYSLVTQQPLGGKAQMGGQRFGEMEVWAAEAYGAAHLLQE 1198 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 +LT+KSDDV GRTR+YESIV G + ++GTPESFNVL+KEMQ LGL I E Sbjct: 1199 LLTVKSDDVSGRTRIYESIVKGENLLQSGTPESFNVLIKEMQGLGLDIRTET 1250 >gi|254442756|ref|ZP_05056232.1| DNA-directed RNA polymerase, beta subunit [Verrucomicrobiae bacterium DG1235] gi|198257064|gb|EDY81372.1| DNA-directed RNA polymerase, beta subunit [Verrucomicrobiae bacterium DG1235] Length = 1257 Score = 1255 bits (3248), Expect = 0.0, Method: Composition-based stats. Identities = 597/1371 (43%), Positives = 835/1371 (60%), Gaps = 147/1371 (10%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R FGK ++I P+LIE+Q SY FL + ER N+G++A F+ VFPI ++ G + Sbjct: 4 RINFGKLKDVITPPNLIEIQINSYLDFLQKDTPISERKNDGIEAVFREVFPIESYDGRLV 63 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEFVSY PK +C+ +TY+VPL + LRL + +IK++ IYMG Sbjct: 64 LEFVSYTVGDPKASEIECIREGITYSVPLYVKLRL-----------REEDNIKDEEIYMG 112 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 ++P+++ G+F+I G +R+VVSQLHRSPGI ++ +GK L+A RIIPD+G W++ Sbjct: 113 EIPMVSSRGSFIINGAERVVVSQLHRSPGIAYE---VTPHTNGKPLHAFRIIPDRGTWLE 169 Query: 194 IEFDSKDIIHVRID---RRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPL 249 ++FD+ D+++V +D RRRK +T+ L A+G S+ +IL FY D Sbjct: 170 VQFDNNDLLYVYLDRRRRRRKFLITTLLRAVGYSSDVDILKLFYTIE------DISTSDA 223 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 A D + + +D + G + + + LT +++ + G+ L + Sbjct: 224 LAKDNVSQYVLVEDAIDAEKGVVIARAFEPLTKAIVREFEGHGIPTLKV----------- 272 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 +D+ ++ I + D +++ Sbjct: 273 ---------------------------------------IDTTVDDGAIVRAMKKDTSQN 293 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 ++AL +IY+ +RPG+ T + A+++ LFFD +YDL VGR K+N +L +D + R Sbjct: 294 EEEALKEIYKRLRPGEPPTTANAKALLKRLFFDPKRYDLGRVGRYKINQKLEMDVDVETR 353 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 ++ EDI+ K L+ L+ G+G +DDID+LG+RRVR+VGE+L NQ RLGL R ER ++ER Sbjct: 354 TLQGEDIVLATKYLIKLKAGEGYLDDIDHLGSRRVRTVGELLANQCRLGLARTERLVRER 413 Query: 490 ISSVDI--DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ++ D DS+ PQ LIN K + + + +FF SQLSQ + +N L+ +TH RRLSALG G Sbjct: 414 MTLYDQSVDSITPQKLINPKALTTVIRDFFARSQLSQFMDQINPLAELTHKRRLSALGPG 473 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHP+HYGRICP ET EG NIGL++SL++++RVN +GFIETPYR V + Sbjct: 474 GLNRERAGFEVRDVHPSHYGRICPIETPEGPNIGLINSLSTYSRVNEFGFIETPYRIVDN 533 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 G+VT ++ YL+A EE + IAQANS +DE+G+F V R +GE + V +++ F+D S Sbjct: 534 GRVTEEIKYLNADMEEGKIIAQANSEIDEEGNFIG-KVTVRQSGEFLEVDPDQVHFMDVS 592 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 KQVVS+AA LIPFLE+DD+NR LMG NMQRQ VPLL+A++PFVGTG+E VA+ S Sbjct: 593 TKQVVSVAAGLIPFLEHDDANRALMGSNMQRQGVPLLQADSPFVGTGIEERVARDSKTVC 652 Query: 728 VAKRAGIVEQVDAIRIVIRSVEG--------DLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 V+ GIV VDA RIVI +G+ +Y L KF RSN TC NQ+ Sbjct: 653 VSDIEGIVASVDARRIVISKDGELPANFERKPQTDVKAGIHVYELRKFMRSNAGTCFNQK 712 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P+V G ++ + IIADGP T G+LA+G+N+L+AFMPW+GYNFED++LISE+++ +D++ Sbjct: 713 PIVSKGQPIKADQIIADGPCTQDGELAIGKNILLAFMPWNGYNFEDAILISEKVLKDDIY 772 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHI EFEV ARDTKLGPEEITRDIPNV EE LK+++ G+I +GAEV PGDILVGKIT Sbjct: 773 TSIHISEFEVTARDTKLGPEEITRDIPNVGEEALKHLNHDGVIRIGAEVKPGDILVGKIT 832 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 PK E+ + PEEKLLRAIFGEKA DV+DTSL VPSGV G V+DV++ +R ++ S S Sbjct: 833 PKSETELAPEEKLLRAIFGEKAADVKDTSLIVPSGVDGIVMDVKVSSRLDYERERLSPSD 892 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNA-------VSGPKGFKKSTVLSSDL 1012 R Q++ + D + L + L IL G+ +G + ++ L Sbjct: 893 RRRQVKQINEDYKTQMDKLREGLTEALSNILLGEKIPLDVVNGQNGEIIIPANRKITKTL 952 Query: 1013 ISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLR 1072 + + + V+ + + Y++ LE + K I+ G+D GV++ Sbjct: 953 LRKLAAVS-KHVEIDPSPVRIKIMEIIGSYQSKFDELESDRERKTANIESGEDAGTGVIK 1011 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA K ++ GDKMAGRHGNKG+V++I+P EDMP+L DGTP+ I LNPLGVPSRMN Sbjct: 1012 QVKVYVATKEKLKVGDKMAGRHGNKGVVAKIVPEEDMPYLPDGTPIQICLNPLGVPSRMN 1071 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 VGQ+ ETH+GWAC LG K+ + + D + + S Sbjct: 1072 VGQVLETHMGWACKMLGMKVSTPVFDGIPEKVVRQHLADAGLPTTGKSKL---------- 1121 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 FDG TGE D V VG Sbjct: 1122 ------------------FDG--------------------------RTGEQLDNEVVVG 1137 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 ++YMLKLNH+VS K++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQ Sbjct: 1138 WVYMLKLNHLVSHKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWALEAYGAAYTLQ 1197 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 E+LT+KSDDV GRT++YES+V G+ T + GTPESFNVL+KE+Q+LGL + L Sbjct: 1198 ELLTVKSDDVQGRTKIYESLVKGDSTLQAGTPESFNVLIKEIQSLGLDVKL 1248 >gi|229497054|ref|ZP_04390758.1| DNA-directed RNA polymerase, beta subunit [Porphyromonas endodontalis ATCC 35406] gi|229315979|gb|EEN81908.1| DNA-directed RNA polymerase, beta subunit [Porphyromonas endodontalis ATCC 35406] Length = 1273 Score = 1255 bits (3248), Expect = 0.0, Method: Composition-based stats. Identities = 554/1373 (40%), Positives = 772/1373 (56%), Gaps = 131/1373 (9%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +R+ F K + PD +EVQ S+ F + A + R EGL F Sbjct: 1 MANTTD-----TIRENFSKIQNTLPYPDFLEVQLKSFQDFFQLQTATECRKQEGLYKVFA 55 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 FPI + LEF+ Y DPPK+ +++C+ R LTY+VPLK L+L D + Sbjct: 56 ENFPIKDTRNSFTLEFIDYCVDPPKYSIEECISRGLTYSVPLKAKLKLSCNDPEHVDFET 115 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +KD +Y+G +P MT GTFVI G +R+VVSQLHRSPG+ F + SG + Sbjct: 116 QVKD-----VYLGPIPYMTPSGTFVINGAERVVVSQLHRSPGVFFSSN---ILPSGVRTF 167 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 + RIIP +G W++I D ++++ IDR++KVPV + L A+G S+ +I S F V Sbjct: 168 SARIIPFRGTWIEIATDPNNVLYAYIDRKKKVPVATLLRAIGYSSDRDIWSAFGIGEVVE 227 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGIT 299 A+ + + +D GE Sbjct: 228 TSKLKNYIGRRVAERIGVRNLEEESLDAAAGEVTA------------------------- 262 Query: 300 SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYV------DSVN 353 E+ +E ++ E+ +EEI + + I V D+ N Sbjct: 263 ---------------QMRYELRVERDTLLTEEVVEEIQKLQEERLTIPDVLLFKESDNSN 307 Query: 354 NNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGR 413 + TL D +A Y + R A+ FN LFF +YDL VGR Sbjct: 308 VINLLVQTLSKDSTISEVEAWRQFYLIQRSVIAPDDLTAKESFNNLFFSDKRYDLGDVGR 367 Query: 414 VKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKN 473 ++N +LNLD DVR + KEDI++I+ L+ L +DDID+L NRRVR+VGE L Sbjct: 368 YRINSKLNLDVDPDVRVLTKEDIVSIVNHLLLLATTGANVDDIDHLSNRRVRTVGEQLAA 427 Query: 474 QYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLS 533 Q+ +GL RM R+++ER++ D + P DL+NAK + S V FF ++QLSQ + N L+ Sbjct: 428 QFGVGLARMARTVRERMNVRDNEVFGPTDLVNAKTISSVVSSFFGTNQLSQFMDQTNPLA 487 Query: 534 RITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVN 593 ITH RRLSALG GG+ R RAG +RDVH THYGR+CP ET EG NIGL+SSL +A+VN Sbjct: 488 EITHKRRLSALGPGGLTRERAGFAVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKVN 547 Query: 594 AYGFIETPYRKVCDGKV---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA 650 + GFIETPYR V DGKV + Y +A EEE +AQ N+ L+ DG+F + V R A Sbjct: 548 SLGFIETPYRAVKDGKVDFSEEGLKYYTAEEEEEMNVAQGNAPLNPDGTFVRDKVKSRYA 607 Query: 651 GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF 710 + +V ++ +D SP Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPL++ EAP Sbjct: 608 ADFPIVAPNQVHLMDVSPSQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLIQPEAPI 667 Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKF 767 VGTG+E + + S ++A+ AG V VDA +I +R E V Y L K+ Sbjct: 668 VGTGVEGKLVRDSRTQVMAEGAGEVIYVDADQIKVRYDKTDEELFVSFEEPVVTYPLPKY 727 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +++NQ+T ++ +P+ + GD V + DI+ +G +T G+LALGRN+LVA+MPW GYN+ED++ Sbjct: 728 RKTNQSTTIDLKPICRKGDRVEKGDILTEGYATQNGELALGRNILVAYMPWKGYNYEDAI 787 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 +++ER+V ED FTS+H+EE ++ R+TK G EE+T DIPNVSE+ K++ E GI+ +GA Sbjct: 788 VLNERIVREDFFTSVHVEEQQLEVRETKRGLEELTSDIPNVSEDATKDLAENGIVRIGAH 847 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 + PGDILVGKITPKGES TPEE+LLRAIFG+KA DV+D SL+ + G V+D ++F++ Sbjct: 848 IVPGDILVGKITPKGESDPTPEERLLRAIFGDKASDVKDASLKASPSLRGVVIDTKLFSK 907 Query: 948 HGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-----SGPKGF 1002 + K + + E + + ++ L + +L+++ G + + + Sbjct: 908 NLDKKRKDIKEI----TERIEGEYSKKKEQLRKVFIDKLLKLTDGHTSNLVEDFASLEII 963 Query: 1003 KKSTVLSSDLISEYPRSQWWQ--FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 + ++ + +D + +L Y LE F+ +I+ Sbjct: 964 AAGKKFNRTMLESIDEYSNIKSSNWTEDAHTNELITTLIANYIRKDKELEAEFRRRIQDE 1023 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GD++ G+++ KV++A KR IQ GDKMAGRHGNKGIVS+I+ EDMPFL+DGTPVDI Sbjct: 1024 TIGDELASGIVQTAKVYIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLEDGTPVDI 1083 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 LNPLGVPSRMN+GQ+FE L A LGK+ S + D + DI Sbjct: 1084 CLNPLGVPSRMNLGQLFEAVLARAGRKLGKRFASPVFDGASPEDI--------------- 1128 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGL 1240 EE I A +D ++ LYDG Sbjct: 1129 -----------------------------------EEYIKE----AGIDPGAKTQLYDGG 1149 Query: 1241 TGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVW 1300 TGEPF + TVG Y LKL HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1150 TGEPFKQRATVGVTYFLKLGHMVDDKMHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1209 Query: 1301 CIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 ++A+GAA++LQE+LTIKSDD +GR+R YE+IV G G PES NVL+ E Sbjct: 1210 ALEAFGAAHILQEILTIKSDDTIGRSRAYEAIVKGTPMPTPGIPESLNVLMNE 1262 >gi|189345745|ref|YP_001942274.1| DNA-directed RNA polymerase subunit beta [Chlorobium limicola DSM 245] gi|189339892|gb|ACD89295.1| DNA-directed RNA polymerase, beta subunit [Chlorobium limicola DSM 245] Length = 1312 Score = 1254 bits (3246), Expect = 0.0, Method: Composition-based stats. Identities = 578/1405 (41%), Positives = 820/1405 (58%), Gaps = 172/1405 (12%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 F K IID PDL++VQ S+ +F+ ++ +R ++GL+ ++ FPIT G +LE Sbjct: 22 DFSKIQSIIDPPDLLKVQLDSFHNFIQDSVPLAKRKDQGLERVLRNAFPITDTRGLYLLE 81 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 ++SY FD PK+ V+DC+ R LTY V LK+ L+L D + K +Q +Y+G + Sbjct: 82 YISYSFDKPKYTVEDCIERGLTYDVSLKVKLKLSYKDEPDEQDWKET---IQQEVYLGRI 138 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 P MT+ GTF++ G +R+VV+QLHRSPG+ F +GK +Y+ +I+P +G W++ + Sbjct: 139 PYMTERGTFIVNGAERVVVAQLHRSPGVVFSE---AVHPNGKKMYSAKIVPTRGSWIEFQ 195 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWCFPLSAADL 254 D + I V ID+++ V++ L A+G +E IL F D Sbjct: 196 TDINNQIFVYIDQKKNFLVSALLRAIGFAKDEDILGLFDLVEEIK-------MSAGKKDQ 248 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 ++G ++S +VD+ TGE + + +T + + + G K + + Sbjct: 249 LIGKYLASDIVDMQTGEV-VSARTAITEDIFEQILAAGYKAVKVMKSY------------ 295 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 D + + I NT++ D + ++AL Sbjct: 296 --------------------------------SGSDKGQDKSIIINTILNDSSATEEEAL 323 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP--------- 425 +Y +R + A S FF+ KYDL VGR ++ +L + Sbjct: 324 EIVYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIRKKLAREFEELVTYLSGK 383 Query: 426 ---------------------------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDN 458 DD+ + DIIA+I L+ L NG+ +DD+D+ Sbjct: 384 KELRELSDGIYQKILQTIQSFSDEPVGDDILVLTHFDIIAVINYLIKLVNGQAEVDDVDH 443 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 L NRRVRSVGE L Q+ +GL RM ++++E+++S D D + P DLINA+ V S V FF Sbjct: 444 LANRRVRSVGEQLAAQFVVGLARMGKNVREKLNSRDSDKIAPADLINARTVSSVVSSFFA 503 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 +SQLSQ + N L+ +T+ RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG Sbjct: 504 TSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGP 563 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 NIGL+SSL+ +A +N GFI+TPYR V G+VT+ VV LSA +EEN+ + LDE+ Sbjct: 564 NIGLISSLSVYAEINDKGFIQTPYRVVEKGQVTDKVVMLSAEDEENKITVPVSVPLDENR 623 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 E V R G+ LVP E ++++D SP Q+VS AA+LIPFLE+DD NR LMG NMQR Sbjct: 624 KIALESVQARTKGDYPLVPAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQR 683 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD----- 753 QAVPLL +EAP VGTGME+ VA+ S + IVA+ AG VE+V A I +R + Sbjct: 684 QAVPLLTSEAPVVGTGMEAKVARDSRSVIVAEEAGTVEEVTADYIRVRYDIDTENEVHLS 743 Query: 754 --PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 G+ Y+L+KF+RSNQ+TC++Q+ LV+ V + D++AD ST+ G+LALG+N+ Sbjct: 744 MLDPDEGLKTYKLIKFKRSNQDTCISQKSLVRTAQRVAKGDVLADSSSTENGELALGKNV 803 Query: 812 LVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE 871 LVAFMPW GYNFED++++SER+V +DVFTSIHI EFE RDTK G E+ TRDI NVSE+ Sbjct: 804 LVAFMPWRGYNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDIYNVSED 863 Query: 872 GLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRV 931 L+N+DE GI+ +GAEV DILVGKITPKGES TPEEKLLRAIFG+K+ DV+D S+ V Sbjct: 864 ALRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHV 923 Query: 932 PSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILC 991 P+G+ G V+ ++F+R ++ +++IE + + D ++ L + L ++L Sbjct: 924 PAGMKGIVIKTKLFSR-----KKKVGLDVKDRIEAVDKRYDQKEYDLRKRFAKWLNQLLD 978 Query: 992 GQN-----AVSGPKGFKKSTVLSSDLISEYP------RSQWWQFAVQDEKVQRNVESLKV 1040 G+ G + +V +++ + + + V+ +KV NV L Sbjct: 979 GKKTTGIFNEKGKVLVAEGSVFDESVLARFSGLPFLESIDFSKGLVESKKVNENVVRLVK 1038 Query: 1041 QYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIV 1100 ++ + D +N+ KI GD++PPG+ + KV++A KR IQ GDKMAGRHGNKG+V Sbjct: 1039 EFRFKLKDIADERENEKYKINVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVV 1098 Query: 1101 SRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK 1160 +IL EDMPF++DGTPVDIVLNPLGVPSRMN+GQ++ET LGWA LG K K+ I + Sbjct: 1099 GKILSIEDMPFMEDGTPVDIVLNPLGVPSRMNIGQLYETSLGWAAKKLGVKFKTPIFNGA 1158 Query: 1161 ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAIN 1220 ++ ++G+P+ Sbjct: 1159 TYEEVQNELE------------------------------RAGLPM-------------- 1174 Query: 1221 SMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQ 1280 G+ L+DG TGE FD VTVGYIYMLKL+H+V DK++ARSTG YSL+TQ Sbjct: 1175 ----------HGKVSLFDGRTGEKFDDEVTVGYIYMLKLSHLVDDKIHARSTGPYSLITQ 1224 Query: 1281 QPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFE 1340 QPLGGK+ GGQR GEMEVW ++AYGAA +L+EMLT+KSDDV+GR + YE+IV G + E Sbjct: 1225 QPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPE 1284 Query: 1341 TGTPESFNVLVKEMQALGLSIDLEN 1365 GTPESFNVLV+E+Q LGL I ++ Sbjct: 1285 PGTPESFNVLVRELQGLGLEIRIDE 1309 >gi|225850728|ref|YP_002730962.1| DNA-directed RNA polymerase subunit beta [Persephonella marina EX-H1] gi|225645675|gb|ACO03861.1| DNA-directed RNA polymerase, beta subunit [Persephonella marina EX-H1] Length = 1491 Score = 1254 bits (3246), Expect = 0.0, Method: Composition-based stats. Identities = 622/1481 (41%), Positives = 876/1481 (59%), Gaps = 109/1481 (7%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK + E+I PDL+ VQK S++ F+ N P +R N+GL+ F++ FP +G Sbjct: 12 LRKNLSRRKEVISPPDLLHVQKKSFEDFVQFNKNPYKRENKGLENIFRTSFPFEDPNGQI 71 Query: 73 MLEFVSYEFD--------------------------------PPKFDVDDCLWRDLTYAV 100 + +++YE K +++C ++ LTY+ Sbjct: 72 EIRYIAYEIGDWECGKCRKPLPEDVVGGPEIPCPNCGGVLIYKEKNSIEECKYKGLTYSA 131 Query: 101 PLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRS 160 PL++ L LIV VD TG + K IK +Y GD+PL+T F+I G +R+VVSQL RS Sbjct: 132 PLRVLLELIVNHVDPSTGEITPKTIKRHKVYFGDIPLLTDKAYFIINGSERVVVSQLIRS 191 Query: 161 PGIHFDHDKGRA-SLSGKLLYACRIIPDQGLWMDIEFDSK-DIIHVRIDRRRKVPVTSFL 218 GI F+ + + + +++Y IIP++G ++ E + +I + RIDR RK+ T+ L Sbjct: 192 SGIFFEAKEDKTKDILTRIIYKGSIIPEKGSRLEFEHATNVEIFNARIDR-RKLLGTTIL 250 Query: 219 MALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA-----ADLMVGAKVSSSLVDIDTGEQ 272 A G+DS +IL FY + + D D +V + + T E+ Sbjct: 251 RAFGLDSAYKILKAFYSDVKRYVKKDNEYIDEKTGVVYNIDELVKELENDEIFITYTVEE 310 Query: 273 VIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGET---GEIYIEAGDVID 329 E G +T K+++ + ++ + VA + G I IE + Sbjct: 311 QDEKGNAVTIRHEKAVEPQNLEKYLLDDRLTIEEIVAISPLVFRKSPYGNIIIETLKKDE 370 Query: 330 EKSLEEIFHSEIRDIPIL------YVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 + + + I ++ A+++ + D+ +V R Sbjct: 371 PQINAMFTFQDAARVDIYRKMRPTDTAVMDPKAFLKRANELFNSVFYDHQRYDLSKVGRV 430 Query: 384 GDVSTFSVAESMFNFLFFDS--DKYDLSTVGRVKM------------------------- 416 + L D+ +KY +G Sbjct: 431 KINAKVHDIPKTIKPLDLDTLLEKYPPLALGEDVEIEGETLKAGTKIDQSVIEKLKTLKF 490 Query: 417 -NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQY 475 +++ D+ R I D+IAI+K L+++R GK +DDI +LGNRRVR VGE+L+NQ Sbjct: 491 EEIKVEQYLDDEARFILLPDVIAIVKYLLEIRLGKKELDDIAHLGNRRVRPVGELLENQA 550 Query: 476 RLGLLRMERSIKERISSVDID--SVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLS 533 RLGL+RM ++ ++R+++VDI+ ++ D++N + V ++ EF QLSQ + N L+ Sbjct: 551 RLGLVRMNKAFRDRVATVDIEDPNLKAADIVNPRYVTGSILEFLKGGQLSQFMDQANPLA 610 Query: 534 RITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVN 593 +TH RRLSALG GG+ R A E+RDVHPTHYGR+CP ET EG NIGL+SS+T ++ +N Sbjct: 611 ELTHKRRLSALGPGGLTRDSAKFEIRDVHPTHYGRVCPIETPEGQNIGLISSMTVYSTIN 670 Query: 594 AYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEE 653 +GF+ +PYRKV +GKVTN++ YL+A +EE IAQAN+ +D++G+F E V R G+ Sbjct: 671 EFGFLVSPYRKVKNGKVTNEIEYLAAYDEEKYVIAQANAPVDDEGNFLAERVLARAKGDI 730 Query: 654 ILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGT 713 LV +++D++D SPKQVVS++ASLIPFLE+DD+NR LMG NMQRQAVPLLK E P VGT Sbjct: 731 RLVDPKEVDYMDVSPKQVVSVSASLIPFLEHDDANRALMGSNMQRQAVPLLKTEYPLVGT 790 Query: 714 GMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE---GDLDPSTSGVDIYRLMKFQRS 770 GME +VAK+SGAA+VAKR G+VE V RIVI+ DP G+D+Y LMKF+ S Sbjct: 791 GMEKIVAKNSGAAVVAKRGGVVESVSGNRIVIKVNPEEINQDDPLDIGLDVYELMKFKGS 850 Query: 771 NQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS 830 NQ TC+NQRPLV+ GD+V IIADG ST G+LALG+N+LVAFMPW GYNFED+++IS Sbjct: 851 NQATCMNQRPLVRRGDKVEAGAIIADGTSTYRGELALGKNVLVAFMPWRGYNFEDAIVIS 910 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 ER+V +DVFTSIHIEEFE AR+TKLG EEITR+I VSE+ L N+DE GI+ VGA V P Sbjct: 911 ERLVKDDVFTSIHIEEFECEARETKLGSEEITRNIVGVSEKALANLDEHGIVRVGAYVKP 970 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 GDILVGK+TPKGE+ TPEEKLL AIFGEKA +V+D+SLRVP+GV G V+DV++F R Sbjct: 971 GDILVGKVTPKGETQPTPEEKLLLAIFGEKASEVKDSSLRVPAGVEGIVIDVQVFARKKT 1030 Query: 951 DK--NERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL 1008 K + + E+I L ++ ++++ + + E++ GQ K K V Sbjct: 1031 GKKEDRYLKQLAEEEINRLEKELEEKKRFIQARRDELVKELIIGQKVPRDIKVAGKVVVK 1090 Query: 1009 SSDLISEYPRSQWWQFAV-------QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQ 1061 + I+E +F V D+KV +VE + + + + E+ ++ + +Q Sbjct: 1091 KGEEITEKTVDAILRFIVVNPSGFLSDKKVAEDVEKIVSKAKLQIELWENIYEKQKAAVQ 1150 Query: 1062 WGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIV 1121 G D+ PGV +VKV++A KR IQ GDKMAGRHGNKG++S +LP EDMPF++DGTPVDIV Sbjct: 1151 KGSDLKPGVNELVKVYIAQKRKIQVGDKMAGRHGNKGVISVVLPEEDMPFMEDGTPVDIV 1210 Query: 1122 LNPLGVPSRMNVGQIFETHLGWACVGLGKK--------------IKSLINDYKANGDISP 1167 LNPLGVPSRMNVGQI ETHLG A LG+K I +I Y+ D + Sbjct: 1211 LNPLGVPSRMNVGQILETHLGLAAKKLGQKLYEELKKLNSKEALIDKIIEYYEIANDTAG 1270 Query: 1168 LRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS-GVPVSTPVFDGADEEAINSMLRMA 1226 + + + DD+++ + + G+PV TPVF+GA EE I +MLR A Sbjct: 1271 ELAQKYREEDIRELRRYLESLDDETLKAIIKDLGEIGIPVRTPVFEGATEEDIKTMLRKA 1330 Query: 1227 DLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGK 1286 E+G+ L DG TGEPFD VT GY+YMLKL HMV DK++ARSTG YSL+TQQPLGG+ Sbjct: 1331 GFKETGKMKLIDGRTGEPFDLEVTAGYMYMLKLIHMVDDKIHARSTGPYSLITQQPLGGR 1390 Query: 1287 SNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPES 1346 + GGQR GEMEVW ++A+GAAY LQEMLT+KSDD+ GR RVYESIV G ++ G PES Sbjct: 1391 AQFGGQRFGEMEVWALEAHGAAYTLQEMLTVKSDDIEGRKRVYESIVKGRYYYDIGVPES 1450 Query: 1347 FNVLVKEMQALGLSI--DLENSRTKNSAKMEEIPDFNKCEL 1385 F VLV+E++AL L + ++E + +++ + K EL Sbjct: 1451 FKVLVRELKALALDVQCNMEGGEKQACDQVDIVSKSKKKEL 1491 >gi|302345061|ref|YP_003813414.1| DNA-directed RNA polymerase, beta subunit [Prevotella melaninogenica ATCC 25845] gi|302149692|gb|ADK95954.1| DNA-directed RNA polymerase, beta subunit [Prevotella melaninogenica ATCC 25845] Length = 1269 Score = 1254 bits (3245), Expect = 0.0, Method: Composition-based stats. Identities = 572/1367 (41%), Positives = 807/1367 (59%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 8 RVNFASVKNPYPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 68 LEFLDYYVDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 123 TIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGTVLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +S+ +IL F Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTMLRAIGYESDRDILQIFDLCEEVKVNKKNMK------ 233 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+K+ ++KS E V ++ Sbjct: 234 ---------------------AAIGRKIAGNVMKSWTEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E +I E ++++I S + I + D+ + + I NTL D + Sbjct: 261 VSIERNEVVVERETIITEDNVDQILDSSVSSILLHKDEDAASKYSIIFNTLAKDPSHSEI 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +LNL+T DVR + Sbjct: 321 EAVNYIYRQLRNADAADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLNLETDMDVRVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 381 TKDDIIEIIKYLISLINSNATVDDIDHLSNRRVRTVGEQLANQFSVGLARMNRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 441 VRDSEVFQPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYR+V D KV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCMYAKINDLGFIVTPYRRVKDAKVD 560 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 DVV+L+A EEE + I Q N+ L+ DG+F ++V CR + +V + + ID SP Sbjct: 561 MDNKDVVFLTAEEEEEQIIGQGNAPLNADGTFIRDVVKCRQDADYPVVTPDSVALIDVSP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S + Sbjct: 621 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMVT 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ + + + YR+ KF+R+NQN V+ RP+ G Sbjct: 681 AEGDGVIEYVDATTIRILYDRTDDEEFVSFEPALKEYRIPKFRRTNQNMVVDLRPICDKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V++ DI+ +G +T+ G+LALGRN++VA+MPW GYN+ED+++ISERMV EDV TS+H++ Sbjct: 741 QRVKKGDILTEGYATENGELALGRNLVVAYMPWKGYNYEDAIVISERMVREDVLTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ GII +GA V PGDI++GKI+PKGES Sbjct: 801 EYSLEVRETKRGVEEFTADIPNVSEEATKDLDDNGIIRIGARVEPGDIMIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R K S ++ + Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--IKTRESKRQDKNILA 918 Query: 966 LLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +++ + L + +L+E+ G S + K + + + Sbjct: 919 KIDEEQEAKINDLKDLLVDKLLELTEDKVSEGVKDYSDAEIITKGSKFTVAALKNLDYEG 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE ++ L + + ++ K K I GD++P GVL++ KV++A Sbjct: 979 IQSNGWTDDEHTNLLIQKLIMNFIRKYKQMDAEMKRKKFAITIGDELPSGVLQMAKVYIA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG+PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1039 KKRKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLEDGSPVDLVLNPMGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ Sbjct: 1099 ILGAAGRKLGVKFATPIFDGAKLSDLKEWTD----------------------------- 1129 Query: 1200 WKSGVPV--STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1130 -KAGLPNLCSTYIYDGE--------------------------TGEKFDQPATVGITYFL 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTI Sbjct: 1163 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTI 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G G PES NVL+ E++ LGLS+ L+ Sbjct: 1223 KSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSVKLD 1269 >gi|78187804|ref|YP_375847.1| DNA-directed RNA polymerase subunit beta [Chlorobium luteolum DSM 273] gi|109904624|sp|Q3B1H7|RPOB_PELLD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|78167706|gb|ABB24804.1| DNA-directed RNA polymerase subunit beta [Chlorobium luteolum DSM 273] Length = 1301 Score = 1254 bits (3245), Expect = 0.0, Method: Composition-based stats. Identities = 575/1405 (40%), Positives = 821/1405 (58%), Gaps = 172/1405 (12%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 F K +I+ PDL++VQ S+ +F+ ++ +R +GL+ +S FPIT G +LE Sbjct: 11 DFSKIQSVIEAPDLLKVQLDSFHNFIQDSVPLAKRREQGLEKVLRSAFPITDTRGLYLLE 70 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 ++SY FD PK+ V+DC+ R LTY V LK+ L+L D + T K +Q +Y+G + Sbjct: 71 YISYSFDKPKYTVEDCIERGLTYDVSLKVKLKLSYKDEADETDWKET---IQQEVYLGRI 127 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 P MT+ GTF++ G +R+VV+QLHRSPG+ F +GK +Y+ +I+P +G W++ + Sbjct: 128 PYMTERGTFIVNGAERVVVAQLHRSPGVVFSE---AVHPNGKKMYSAKIVPTRGSWIEFQ 184 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWCFPLSAADL 254 D + I V ID+++ VT+ L A+G +E IL F + + Sbjct: 185 TDINNQIFVYIDQKKNFLVTALLRAIGFTRDEDILGLFDLVEEV-------PMKAAKRER 237 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 +VG ++S +VD+ TGE + + +T + + ++ G K + I Sbjct: 238 LVGQYLASDIVDMQTGEV-VSARTAITEEVFEQIQAAGYKSVKIMKSF------------ 284 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 G D + + + NT++ D + ++AL Sbjct: 285 --NG------------------------------SDKGQDKSIVINTILNDSSATEEEAL 312 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP--------- 425 +Y +R + A S FF+ KYDL VGR ++ +L+ + Sbjct: 313 EIVYEELRANEAPDIDAARSFLERTFFNQKKYDLGEVGRYRIGKKLSREFSEMDEYLGGK 372 Query: 426 ---------------------------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDN 458 ++V + DIIA+I L+ L NG+ +DD+D+ Sbjct: 373 GELKQLSDTIHQKILQTIQSFSDEPIGEEVLVLTHLDIIAVINYLIKLVNGQAEVDDVDH 432 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 L NRRVRSVGE L Q+ +GL RM ++++E+++S D D + P DLINA+ V S V FF Sbjct: 433 LANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDSDKIAPADLINARTVSSVVSSFFA 492 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 +SQLSQ + N L+ +T+ RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG Sbjct: 493 TSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGP 552 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 NIGL+SSL+ +A +N GFI+TPYR V G VT+ VV LSA +EEN+ + +D + Sbjct: 553 NIGLISSLSVYAEINDKGFIQTPYRVVEKGHVTDTVVMLSAEDEENKITVPVSIPIDANN 612 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 + E V R G+ LVP E ++++D SP Q+VS AA+LIPFLE+DD NR LMG NMQR Sbjct: 613 NIAVESVQARTKGDYPLVPSEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQR 672 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD----- 753 QAVPLL +EAP VGTGME+ VA+ S + I+ + G VE+V + I +R + Sbjct: 673 QAVPLLVSEAPVVGTGMEAKVARDSRSVILGEGPGFVEEVTSEFIKVRYDIDTENNEHMS 732 Query: 754 --PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 G+ YR++KF+RSNQ+TC++QRP+VK G +V + ++AD ST+ G+LALG+N+ Sbjct: 733 LLDPDEGLKTYRMIKFKRSNQDTCISQRPIVKNGQKVDKGTVLADSSSTEDGELALGKNV 792 Query: 812 LVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE 871 LVAFMPW GYNFED++++SER+V +DVFTSIH+ EFE RDTK G E+ TRDI NVS+E Sbjct: 793 LVAFMPWRGYNFEDAIILSERLVYDDVFTSIHVHEFEANVRDTKRGEEQFTRDIYNVSDE 852 Query: 872 GLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRV 931 L+N+DE GI+ +GAEV DILVGKITPKGES TPEEKLLRAIFG+K+ DV+D S+ V Sbjct: 853 ALRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHV 912 Query: 932 PSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILC 991 P+G+ G V+ ++F+R ++ +E++EL+ + ++ L ++ L ++L Sbjct: 913 PAGMKGIVIKTKLFSR-----KKKVGMDVKEKLELIDARFERREIELRKSFEKWLRQMLQ 967 Query: 992 GQNAVS-----GPKGFKKSTVLSSDLISEYPRSQWWQFA------VQDEKVQRNVESLKV 1040 G+ G + L++++ + + +KV V L Sbjct: 968 GKKVKGLTSDKGKVLADEGAAFDDALLAKFSSQPFLESIDFTLGVTGTKKVDEAVIRLVK 1027 Query: 1041 QYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIV 1100 ++ L D N+ K+ GD++PPG+ + KV++A KR IQ GDKMAGRHGNKG+V Sbjct: 1028 EFRFKLKDLADERDNEKYKVNVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVV 1087 Query: 1101 SRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK 1160 +ILP EDMPF+ DGTPVDIVLNPLGVPSRMN+GQ++ET LGWA LG K K+ I + Sbjct: 1088 GKILPIEDMPFMADGTPVDIVLNPLGVPSRMNIGQLYETSLGWAAKKLGVKFKTPIFNGA 1147 Query: 1161 ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAIN 1220 ++ AE ++G+P+ Sbjct: 1148 TYEEVQ------------------------------AELERAGLPM-------------- 1163 Query: 1221 SMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQ 1280 G+ LYDG TGE FD VTVGYIYMLKL+H+V DK++ARSTG YSL+TQ Sbjct: 1164 ----------HGKVRLYDGRTGEQFDDEVTVGYIYMLKLSHLVDDKIHARSTGPYSLITQ 1213 Query: 1281 QPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFE 1340 QPLGGK+ GGQR GEMEVW ++AYGAA +L+EMLT+KSDDVVGR + YE+IV G + E Sbjct: 1214 QPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVVGRNKTYEAIVKGQNLPE 1273 Query: 1341 TGTPESFNVLVKEMQALGLSIDLEN 1365 G PESFNVL++E+Q LGL I +++ Sbjct: 1274 PGIPESFNVLIRELQGLGLEIRIDD 1298 >gi|281358737|ref|ZP_06245213.1| DNA-directed RNA polymerase, beta subunit [Victivallis vadensis ATCC BAA-548] gi|281314764|gb|EFA98801.1| DNA-directed RNA polymerase, beta subunit [Victivallis vadensis ATCC BAA-548] Length = 1274 Score = 1254 bits (3244), Expect = 0.0, Method: Composition-based stats. Identities = 601/1376 (43%), Positives = 836/1376 (60%), Gaps = 124/1376 (9%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R FGK +++D+PDLI +Q SY +FL ++ P ER N+GLQ F +FPI +F Sbjct: 4 RINFGKLRDVLDVPDLIGLQLDSYFNFLQRDVPPAERKNQGLQEVFNEIFPIESFDKQMS 63 Query: 74 LEFVSYEFDPP---KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 LEFVSYE K DV DC+ Y PL + L V + + + Sbjct: 64 LEFVSYEIGNSTDQKGDVVDCIKDGKIYDAPLYVDFLLKVNGTEIP-----------ERV 112 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 YMGD+P+MT+ GTF+I G +R+++SQLHRSPGI F+ + SG+ LY+ RIIPD+G Sbjct: 113 YMGDIPIMTEQGTFIINGAERVIISQLHRSPGICFEKTR---HTSGRTLYSYRIIPDRGS 169 Query: 191 WMDIEFDSKDIIHVRIDRRR---KVPVTSFLMALGM-DSEEILSTFYPKIVYSQRGDFWC 246 WMD++FD D I++ +DRRR K +T+FL A+G + +IL+ Y ++ Sbjct: 170 WMDVQFDINDFIYIYLDRRRRRRKFYITTFLRAIGYPTNRDILAECYEVKKHT------- 222 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGL 306 T+ LLK L G Sbjct: 223 ----------------------------------TASLLKQ-------------KDLSGF 235 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDK 366 Y +DI E + I+ + E L+++ + I+++ + Y+ + Y+ L D Sbjct: 236 YTVDDIT-TEDDVLVIDELVQLTENHLKQLIDAGIKEVELAYI--AEGDNYLIGCLRKDP 292 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 ++ +DAL +IYR MRPGD + A+ + LFFD+ +YDL VGR K+N RL D P Sbjct: 293 ARNEEDALKEIYRRMRPGDPPNINNAKLLIKRLFFDNRRYDLGAVGRYKLNERLKQDIPL 352 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 +R + +D++A K+L+ LR+ G +DDID+LG RRVR+VGE+L+NQ R GLLR ER + Sbjct: 353 TLRVLDPKDLMAATKMLIKLRHSGGAVDDIDHLGARRVRTVGELLQNQCRAGLLRTERLV 412 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 +ER++ D +V P L+N K + +FF SQLSQ + N LS +T+ RRLSALG Sbjct: 413 RERMTFDDQ-NVTPSKLVNPKAFAGVIRDFFARSQLSQFMDQTNPLSELTNKRRLSALGP 471 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG++R RAG E+RDVH +HYGRICP ET EG NIGL+SS++ +A ++ YGF+ETPYRKV Sbjct: 472 GGLSRDRAGFEVRDVHSSHYGRICPIETPEGPNIGLISSMSLYAIIDEYGFLETPYRKVV 531 Query: 607 DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 DG+VT+ + YL+A +EE IAQAN+ LDE+ F ++ R GE PRE + ++D Sbjct: 532 DGQVTDQIDYLTADKEEQYVIAQANALLDENNRFVRPMIMSRYKGESEEHPREAVQYMDV 591 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 SPKQ++S AA +IPFLE+DD+NR LMG NMQRQAVPLL E+P+VGTG+E+ +A+ S A Sbjct: 592 SPKQLISAAAGIIPFLEHDDANRALMGSNMQRQAVPLLMPESPYVGTGLEARIARDSRAV 651 Query: 727 IVAKRAGIVEQVDAIRIVIRSVEG--DLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 + AK GIV +V + I++ D YRL K+ RSN T VNQRP+V+ Sbjct: 652 VAAKADGIVAEVCSEHIIVTPDGNLPAPDADKKSYQYYRLYKYLRSNAGTSVNQRPIVEH 711 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V++ DI+ADG +T G+LALGRN+LVA+MPW GYNFED++++SER+V EDV+TSIH+ Sbjct: 712 GQAVKKGDILADGAATQDGELALGRNVLVAYMPWCGYNFEDAIIVSERLVKEDVYTSIHV 771 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +EFE+ +R+TKLGPEEITRDIPNVSE+ L+N+D G++ GAEV PGDILVGKITPK E+ Sbjct: 772 DEFEITSRETKLGPEEITRDIPNVSEDALRNLDSRGVVFEGAEVKPGDILVGKITPKSET 831 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 + PEE+LLRAIFGEKA DV+D+SL VPSG G V+D+RI ++ S S E+ Q Sbjct: 832 ELAPEERLLRAIFGEKAADVKDSSLTVPSGKGGIVMDIRIEYAKDPSRSSLSKSEEKRQQ 891 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG----------FKKSTVLSSDLIS 1014 +++ D D L ++ SRL +++ G + ++ I Sbjct: 892 KMMKNDYRDIYNGLIDDLTSRLSDVMLGIKLPYPIFDMSPARENAVLISSNRKVTKSSIQ 951 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + + + ++++D +++ + + + E++ + + + GD+ GV++ V Sbjct: 952 KLA-AHYDCWSMEDCDLKKTLTEIIDSFIPQFEENEEKRRRMADNMDSGDNADLGVIKRV 1010 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV+V KR +Q GDKMAGRHGNKGIVSRI+P EDMPFL+DGTPVDI+LNPLGVPSRMN+G Sbjct: 1011 KVYVGCKRKLQVGDKMAGRHGNKGIVSRIVPVEDMPFLEDGTPVDIILNPLGVPSRMNIG 1070 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVL 1194 Q+ ETHLGWA LG K + + D +I L + + + Sbjct: 1071 QVLETHLGWAAKMLGFKAATPVFDGIGEQEIIDLMRKGNDAFTAKEGHDYHWGFKQNEAG 1130 Query: 1195 RVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYI 1254 G++ +YDG TG FD+ V VG + Sbjct: 1131 EWV--------------------------------YDGKADVYDGRTGNKFDQRVMVGQV 1158 Query: 1255 YMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEM 1314 YMLKL+H+V++K++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEM Sbjct: 1159 YMLKLDHLVANKIHARAVGPYSLVTQQPLGGKAQHGGQRFGEMEVWALEAYGAAYNLQEM 1218 Query: 1315 LTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LT+KSDDV GR R+YESIV G++ E G PESFNVL+KEMQ+LGL I ++N Sbjct: 1219 LTVKSDDVAGRARIYESIVKGHNVLEAGRPESFNVLLKEMQSLGLDIRTVKKTSEN 1274 >gi|291516062|emb|CBK65272.1| DNA-directed RNA polymerase subunit beta [Alistipes shahii WAL 8301] Length = 1249 Score = 1254 bits (3244), Expect = 0.0, Method: Composition-based stats. Identities = 564/1351 (41%), Positives = 801/1351 (59%), Gaps = 131/1351 (9%) Query: 43 MNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPL 102 M+ + R NEGL F+ FPIT +LEF+ Y DPP++ +++CL R LTY+VPL Sbjct: 1 MDTTAENRKNEGLYKVFQENFPITDTRNNFVLEFIDYYIDPPRYSIEECLERGLTYSVPL 60 Query: 103 KITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPG 162 K L+L D + + Q +Y G +P MT+ GTFVI G +R++VSQLHRSPG Sbjct: 61 KAKLKLYCTDDEHEDFGVVV-----QDVYFGTIPYMTERGTFVINGAERVIVSQLHRSPG 115 Query: 163 IHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALG 222 + F +G LY+ RIIP +G W++ D ++++ IDR++K+PVT+ L A+G Sbjct: 116 VFFGQSM---HTNGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIG 172 Query: 223 MDSEE-ILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLT 281 ++++ IL F + V ++ G+KL Sbjct: 173 YEADQQILEIF---------------------------DLADEVKVNKANLKKAVGRKLA 205 Query: 282 SGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEI 341 + +L + E V ++V+ E + ++ V++E+ +++I S Sbjct: 206 ARVLSTWVEDFVDEDT------------GEVVSIERNNVIVDRETVLEEEHVDQILESGA 253 Query: 342 RDIPILYVDSVN-NNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLF 400 + I + + + + I NTL D K+A++ IYR +R + + A + LF Sbjct: 254 KTILLHKENLSGIDFSIIYNTLQKDPCNSEKEAVVYIYRQLRASEPPDEATARDVIEKLF 313 Query: 401 FDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 F +YDL VGR ++N +L+LDT +R + +EDIIAIIK L+ L N K +DDID+L Sbjct: 314 FSDKRYDLGDVGRYRINKKLDLDTDPAIRTLTREDIIAIIKYLIQLINSKADVDDIDHLS 373 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVR+VGE L NQ+ +G +RM R+I+ER++ D + P DLINAK + S + FF +S Sbjct: 374 NRRVRTVGEQLSNQFSVGFVRMARTIRERMNVRDNEVFTPVDLINAKTLSSVINSFFGTS 433 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + +N L+ ITH RRLSALG GG++R RAG E+RDVH THYGR+CP E+ EG NI Sbjct: 434 QLSQFMDQINPLAEITHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRLCPIESPEGPNI 493 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTND---VVYLSAMEEENRYIAQANSSLDED 637 GL+SSL +A+++ GFIETPYR+V +GKV D + Y SA EEE+ AQAN+ +D + Sbjct: 494 GLISSLCVYAKISPMGFIETPYRRVENGKVDMDNSHIHYYSAEEEEDLVAAQANTPIDGE 553 Query: 638 GSFTE-ELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNM 696 G+F E + + R + +V ++D +D +P Q+ SIAASLIPFLE+DD+NR LMG NM Sbjct: 554 GNFLEPDRIKAREGADFPVVTASEVDLMDVAPNQIASIAASLIPFLEHDDANRALMGSNM 613 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS---VEGDLD 753 RQAVPL+ +EAP VGTG+E + S IVA+ G V DA +I I+ + L Sbjct: 614 MRQAVPLVTSEAPIVGTGIEKDMISDSRIQIVAEGDGEVVFADATKIQIKYERTEDEILA 673 Query: 754 PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLV 813 V Y L +++R+NQNT V +P+V GD+V + I+ +G ST G+LALGRN+ V Sbjct: 674 SFAPEVTTYTLPRYRRTNQNTSVTLKPIVLTGDKVTKGQILTEGYSTQHGELALGRNLKV 733 Query: 814 AFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 AFMPW GYNFED+++ISER+ ED+FTS+H++E+ + RDTK G EE+T DIPNVSE+ Sbjct: 734 AFMPWKGYNFEDAIVISERIQREDIFTSVHVDEYIMEVRDTKRGVEELTSDIPNVSEDAT 793 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 K++D GI+ VGA ++PGDIL+GKITPKGES +PEEKLLRAIFG+KA DV+D SL+ Sbjct: 794 KDLDANGIVRVGANIHPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKAQP 853 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 + G V+D R+++R + ++S S E+ Q++ L E L + + +L +L G+ Sbjct: 854 SLHGVVIDTRLYSRANKE-GKKSKSAEKAQLDKLDEKFAAEIAELTKRLVGKLWTLLQGK 912 Query: 994 NAVS-----GPKGFKKSTVLSSDLISEYPRSQWWQF--------------AVQDEKVQRN 1034 + G + + T S ++ E R + D Sbjct: 913 TSTGVTDYFGVELYPAGTKFSQKMLEEIARKSTDEKTGVVMGYLNLGSCNWTGDAHTDAL 972 Query: 1035 VESLKVQYETSKSILEDRFKNKIEKIQWGDDMPP-GVLRVVKVFVAMKRPIQSGDKMAGR 1093 +E+ Y + K + I GD++P GV+++ KV++A KR ++ GDKMAGR Sbjct: 973 IEATINNYTIEWKKADAAIKREKYNITNGDELPQTGVIQMAKVYIAKKRKLKVGDKMAGR 1032 Query: 1094 HGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIK 1153 HGNKGIV+RI+ EDMPFL+DGT VDI LNPLGVPSRMN+GQI+ET LGWA LG K Sbjct: 1033 HGNKGIVARIVRDEDMPFLEDGTIVDICLNPLGVPSRMNLGQIYETVLGWAGRELGLKFA 1092 Query: 1154 SLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDG 1213 + I D + I+ + ++G+P Sbjct: 1093 TPIFDGASLDQINEYTA------------------------------QAGIP-------- 1114 Query: 1214 ADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTG 1273 SG++ LYDG TGE FD+P TVG IYMLKL HM+ DK++ARS G Sbjct: 1115 ----------------HSGRTYLYDGGTGEMFDQPATVGVIYMLKLGHMIDDKMHARSIG 1158 Query: 1274 SYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIV 1333 YSL+TQQPLGGK+ GGQR GEMEVW ++ +GAA +LQE+LTIKSDDV+GR + YE+IV Sbjct: 1159 PYSLITQQPLGGKAQFGGQRFGEMEVWALEGFGAANILQEILTIKSDDVMGRAKAYEAIV 1218 Query: 1334 AGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 G + + G PE+ NVL+ E++ L LS+ LE Sbjct: 1219 KGENLPKPGIPEAMNVLLHELRGLALSVKLE 1249 >gi|110597684|ref|ZP_01385969.1| DNA-directed RNA polymerase, beta subunit [Chlorobium ferrooxidans DSM 13031] gi|110340804|gb|EAT59281.1| DNA-directed RNA polymerase, beta subunit [Chlorobium ferrooxidans DSM 13031] Length = 1300 Score = 1253 bits (3241), Expect = 0.0, Method: Composition-based stats. Identities = 572/1405 (40%), Positives = 808/1405 (57%), Gaps = 172/1405 (12%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 F K II+ PDL++VQ S+ +FL ++ +R ++GL+ +S FPIT G +LE Sbjct: 10 DFSKIQSIIEPPDLLKVQLDSFHNFLQDSVPLAKRKDQGLERVLRSAFPITDTRGLYLLE 69 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 ++SY FD PK+ V+DC+ R LTY V LK+ L+L D + T K +Q +Y+G + Sbjct: 70 YISYSFDKPKYTVEDCIERGLTYDVSLKVKLKLSYKDEPDETDWKET---IQQEVYLGRI 126 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 P MT+ GTF++ G +R+VV+QLHRSPG+ F +GK +Y+ +I+P +G W++ + Sbjct: 127 PFMTERGTFIVNGAERVVVAQLHRSPGVVFSE---AVHPNGKKMYSAKIVPTRGSWIEFQ 183 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWCFPLSAADL 254 D + I V ID+++ V++ L A+G +E IL F + + Sbjct: 184 TDINNQIFVYIDQKKNFLVSALLRAIGFTRDEDILGLFDLVEEVPLKAGK-------KEQ 236 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 +VG ++S +VD+ TGE + + +T + + + G K + + G Sbjct: 237 LVGQYLASDIVDMQTGEV-VSARTAITEEIFEQILAAGYKSVKVMKSFAGG--------- 286 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 D + + I NT++ D + ++AL Sbjct: 287 -----------------------------------DKGKDKSIIINTILNDSSATEEEAL 311 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP--------- 425 +Y +R + A S FF+ KYDL VGR ++ +L + Sbjct: 312 EIVYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIKKKLGREFEELDTYLAGK 371 Query: 426 ---------------------------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDN 458 +D+ + DII++I L++L NG +DD+D+ Sbjct: 372 PELKKLSDTIYDKILQTIQSFSDEPVGEDILVLTHYDIISVIYYLINLVNGLAEVDDVDH 431 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 L NRRVRSVGE L Q+ +GL RM ++++E+++S D D + P DLINA+ V S V FF Sbjct: 432 LANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDSDKIAPADLINARTVSSVVSSFFA 491 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 +SQLSQ + N L+ +T+ RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG Sbjct: 492 TSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGP 551 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 NIGL+SSL+ +A +N GFI+TPYR V G+VT V+ LSA +EEN+ + LD + Sbjct: 552 NIGLISSLSVYAEINDKGFIQTPYRVVEKGQVTGTVLMLSAEDEENKITVPVSVPLDANN 611 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 E V R G+ +V E ++++D SP Q+VS AA+LIPFLE+DD NR LMG NMQR Sbjct: 612 RIALETVQARTKGDYPVVAAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQR 671 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD----- 753 QAVPLL +EAP VGTGME VA+ S + IVA+ G+VE V A + +R + Sbjct: 672 QAVPLLTSEAPVVGTGMEGKVARDSRSVIVAEGTGVVEDVTAEYVQVRYDISVENDVRLS 731 Query: 754 --PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 G+ Y+L+KF+RSNQ+TC++Q+P+V +G+ V + ++AD STD G+LALG+N+ Sbjct: 732 LLDPDEGLKTYKLIKFKRSNQDTCISQKPMVHIGNRVEKGSVLADSSSTDHGELALGKNV 791 Query: 812 LVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE 871 LVAFMPW GYNFED++++SER+V +DVFTSIH+ EFE RDTK G E+ TRDI NVSE+ Sbjct: 792 LVAFMPWRGYNFEDAIILSERLVYDDVFTSIHVHEFEANVRDTKRGEEQFTRDIYNVSED 851 Query: 872 GLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRV 931 L+N+DE GI+ +GAEV DILVGKITPKGES TPEEKLLRAIFG+K+ DV+D S+ V Sbjct: 852 ALRNLDENGIVRLGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHV 911 Query: 932 PSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILC 991 P+G+ G V+ ++F+R ++ +E++E + + D + L R L + L Sbjct: 912 PAGMKGIVIKTKLFSR-----KKKVGMDVKEKLEAVDKRFDSREFDLRRRFAKWLKQHLE 966 Query: 992 GQNAV-----SGPKGFKKSTVLSSDLISEYPRSQWWQFA------VQDEKVQRNVESLKV 1040 G +V G + + L++++ + + EKV NV L Sbjct: 967 GAVSVAVNSDKGKVLIAEGSAFDDALLAKFSSMPFLESIDFTRGLTASEKVNDNVLRLVK 1026 Query: 1041 QYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIV 1100 ++ L D +N+ KI GD++PPG+ + KV++A KR IQ GDKMAGRHGNKG+V Sbjct: 1027 EFRFKLKDLSDERENEKYKINVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVV 1086 Query: 1101 SRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK 1160 +ILP EDMPF+ DGTPVDIVLNPLGVPSRMN+GQ++ET LGWA LG K K+ I + Sbjct: 1087 GKILPIEDMPFMADGTPVDIVLNPLGVPSRMNIGQLYETSLGWAAKKLGVKFKTPIFNGA 1146 Query: 1161 ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAIN 1220 ++ FD Sbjct: 1147 TYEEVQQQLEKAGLPAHGKVSL----------------------------FD-------- 1170 Query: 1221 SMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQ 1280 G TGE FD VTVGYIYMLKL+H+V DK++ARSTG YSL+TQ Sbjct: 1171 ------------------GRTGERFDDEVTVGYIYMLKLSHLVDDKIHARSTGPYSLITQ 1212 Query: 1281 QPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFE 1340 QPLGGK+ GGQR GEMEVW ++AYGAA +L+EMLT+KSDDV+GR + YE+IV G + E Sbjct: 1213 QPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPE 1272 Query: 1341 TGTPESFNVLVKEMQALGLSIDLEN 1365 G PESFNVL++E+Q LGL I +++ Sbjct: 1273 PGIPESFNVLIRELQGLGLEIRIDD 1297 >gi|288803792|ref|ZP_06409219.1| DNA-directed RNA polymerase, beta subunit [Prevotella melaninogenica D18] gi|288333699|gb|EFC72147.1| DNA-directed RNA polymerase, beta subunit [Prevotella melaninogenica D18] Length = 1269 Score = 1252 bits (3239), Expect = 0.0, Method: Composition-based stats. Identities = 570/1367 (41%), Positives = 807/1367 (59%), Gaps = 121/1367 (8%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F PD ++VQ S+ FL ++ P+ER N+GL F FPIT + Sbjct: 8 RVNFASVKNPYPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFV 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LEF+ Y DPP++ +D+CL R LTY+VPLK ++L D D I Q +++G Sbjct: 68 LEFLDYYVDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFI-----QDVFLG 122 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P MT +GTFVI G +R+VVSQLHRSPG+ F +G +LY+ RIIP +G W++ Sbjct: 123 TIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQG---VHANGTVLYSARIIPFKGSWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 D ++++ IDR++K+PVT+ L A+G +++ +IL F Sbjct: 180 FATDINNVMYAYIDRKKKLPVTTMLRAIGYETDRDILQIFDLCEEVKVNKKNMK------ 233 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 G+K+ ++KS E V ++ Sbjct: 234 ---------------------AAIGRKIAGNVMKSWTEDFVDEDT------------GEV 260 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL-YVDSVNNNAYIRNTLVTDKNKDRK 371 V+ E E+ +E +I E+++++I S + I + D+ + + I NTL D + Sbjct: 261 VSIERNEVVVERETIITEENVDQILDSSVSSILLHKDEDAASKYSIIFNTLAKDPSHSEI 320 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 +A+ IYR +R D + + A +F LFF +YDL VGR ++N +LNL+T DVR + Sbjct: 321 EAVNYIYRQLRNADAADDASAREVFQNLFFSDKRYDLGEVGRYRINKKLNLETDMDVRVL 380 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K+DII IIK L+ L N T+DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER++ Sbjct: 381 TKDDIIEIIKYLISLINSNATVDDIDHLSNRRVRTVGEQLANQFSIGLARMNRTIRERMN 440 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D + P DLINAK + S + FF ++ LSQ + N L+ +TH RRLSALG GG++R Sbjct: 441 VRDSEVFQPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSR 500 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV- 610 RAG E+RDVH THYGR+CP E+ EG NIGL+SSL +A++N GFI TPYR+V D KV Sbjct: 501 ERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCMYAKINDLGFIVTPYRRVKDAKVD 560 Query: 611 --TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 DVV+L+A EEE + I Q N+ L+ DG+F ++V CR + +V + + ID SP Sbjct: 561 MDNKDVVFLTAEEEEEQIIGQGNAPLNADGTFIRDVVKCRQDADYPVVTPDSVALIDVSP 620 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 +Q+ S++A LIPFLE+DD +R LMGCNM RQAVPLL +AP VGTG+E V + S + Sbjct: 621 QQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMVT 680 Query: 729 AKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ G++E VDA I I R+ + + + YR+ KF+R+NQN V+ RP+ G Sbjct: 681 AEGDGVIEYVDATTIRILYDRTDDEEFVSFEPALKEYRIPKFRRTNQNMVVDLRPICDKG 740 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V++ DI+ +G +T+ G+LALGRN++VA+MPW GYN+ED+++ISERMV EDV TS+H++ Sbjct: 741 QRVKKGDILTEGYATENGELALGRNLVVAYMPWKGYNYEDAIVISERMVREDVLTSVHVD 800 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + R+TK G EE T DIPNVSEE K++D+ GII +GA V PGDI++GKI+PKGES Sbjct: 801 EYSLEVRETKRGVEEFTADIPNVSEEATKDLDDNGIIRIGARVEPGDIMIGKISPKGESD 860 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PEEKLLRAIFG+KA DV+D+SL+ +SG V+D ++F+R K S ++ + Sbjct: 861 PSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFSRA--IKTRESKRQDKNILA 918 Query: 966 LLARDKDDEQVILDRNIYSRLMEIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +++ + L + +L+E+ G S + K + + + Sbjct: 919 KIDEEQEAKINDLKDLLVDKLLELTEDKVSEGVKDYSDAEIITKGSKFTVAALKNLDYEG 978 Query: 1021 W-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 DE ++ L + + ++ K K I GD++P GVL++ KV++A Sbjct: 979 IQSNGWTDDEHTNLLIQKLIMNFIRKYKQMDAEMKRKKFAITIGDELPSGVLQMAKVYIA 1038 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR IQ GDK+AGRHGNKGIVS+++ EDMPFL+DG+PVD+VLNP+GVPSRMN+GQIFE Sbjct: 1039 KKRKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLEDGSPVDLVLNPMGVPSRMNLGQIFEA 1098 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 LG A LG K + I D D+ Sbjct: 1099 ILGAAGRKLGVKFATPIFDGAKLSDLKEWTD----------------------------- 1129 Query: 1200 WKSGVPV--STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYML 1257 K+G+P ST ++DG TGE FD+P TVG Y L Sbjct: 1130 -KAGLPNLCSTYIYDGE--------------------------TGEKFDQPATVGITYFL 1162 Query: 1258 KLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTI 1317 KL HMV DK++ARS G YSL+TQQPLGGK+ GGQR GEMEVW I+A+GA++VLQE+LTI Sbjct: 1163 KLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTI 1222 Query: 1318 KSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 KSDDVVGR++ YE+IV G PES NVL+ E++ LGLS+ L+ Sbjct: 1223 KSDDVVGRSKAYEAIVKGEPMPTPDIPESLNVLLHELRGLGLSVKLD 1269 >gi|208435092|ref|YP_002266758.1| DNA-directed RNA polymerase, beta subunit [Helicobacter pylori G27] gi|208433021|gb|ACI27892.1| DNA-directed RNA polymerase, beta subunit [Helicobacter pylori G27] Length = 2805 Score = 1251 bits (3238), Expect = 0.0, Method: Composition-based stats. Identities = 579/1327 (43%), Positives = 850/1327 (64%), Gaps = 44/1327 (3%) Query: 92 LWRDLTYAVPLKITLRLIVFDVDEFTGAKS-IKDIKEQSIYMGDLPLMTKDGTFVIKGIQ 150 + R +TY++PLKI +RLI+++ D +G K+ IKDIKEQSI++ ++PLMT+ +F+I G++ Sbjct: 1 MERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQSIFIREIPLMTERTSFIINGVE 60 Query: 151 RIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRR 210 R+VV+QLHRSPG+ F ++ SL+ KL+Y +IIPD+G W+ E+DSKD+++ RI++RR Sbjct: 61 RVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQIIPDRGSWLYFEYDSKDVLYARINKRR 119 Query: 211 KVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTG 270 KVPVT A+ ++I+ FYP + D + P ++ D ++ L D G Sbjct: 120 KVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIPFASLD--ANQRMEFDLKDPQ-G 176 Query: 271 EQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDE 330 + ++ +GKKLTS +K LKE ++++ D L ++AE + E+ ++ +D+ Sbjct: 177 KIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLAEPV--MVGKEVLLDMLTQLDK 234 Query: 331 KSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK----------DRKDAL--LDIY 378 LE+I +++ I+ ++ ++A I ++ + D D ++AL + I+ Sbjct: 235 NRLEKIHDLGVQEFVIINDLALGHDASIIHSFLADYESLKLLKQTEKIDDENALAAIRIH 294 Query: 379 RVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIA 438 +VM+PGD T VA+ LFFD ++YDL+ VGR+KMN +L L PD + + EDII Sbjct: 295 KVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHKLGLHVPDYITTLTHEDIIT 354 Query: 439 IIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD--ID 496 +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ GL++M+++IK++++++ D Sbjct: 355 TVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGLVKMQKTIKDKLTTMSGAFD 414 Query: 497 SVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGV 556 S+MP DL+N+K + S + EFF QLSQ + N LS +TH RRLSALG+GG+ + R G Sbjct: 415 SLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVGF 474 Query: 557 EMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVY 616 E RDVHPTHYGRICP ET EG NIGL+++L++F RVN GFIE PY+KV DGKV + +Y Sbjct: 475 EARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKKVVDGKVVGETIY 534 Query: 617 LSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAA 676 L+A++E++ IA A++ +DE+G+ +L+ R GE +L + K+ +D S +V +AA Sbjct: 535 LTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNEKSKVTLMDLSSSMLVGVAA 594 Query: 677 SLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 SLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG+E ++A+ S AI A RAG+VE Sbjct: 595 SLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEKIIARDSWGAIKANRAGVVE 654 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 ++D+ I I + +D Y L K R+NQNT NQ P+VKVGD+V IIAD Sbjct: 655 KIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNTSFNQVPIVKVGDKVEAGQIIAD 710 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 GPS D G+LALG+N+ VAFMPW+GYNFED++++SE + +DVFTS HI E EV AR+ K Sbjct: 711 GPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSECITKDDVFTSTHIYEKEVDARELKH 770 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G EE T DIP+V EE L ++DE GI+ VG V+ G ILVGK +PKGE TPEE+LLRAI Sbjct: 771 GAEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPKGEIKSTPEERLLRAI 830 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 FG+KA V + SL P + GTV+DV++F + G +K+ R +S E+ L + D Sbjct: 831 FGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYEEEKAKLDMEHFDRLT 890 Query: 977 ILDRNIYSRLMEILCG----QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ-DEKV 1031 +L+R R+ +L + K +K+ + + I+ R + ++V Sbjct: 891 MLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASINRFTLASLVKKYSKEV 950 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 Q + E K + K +L + + K+ ++ D +P GV++ VK+++A KR ++ GDKMA Sbjct: 951 QNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKLYIATKRKLKVGDKMA 1010 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKGIVS I+P DMP+ DG PVDIVLNPLGVPSRMN+GQI E HLG GK+ Sbjct: 1011 GRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVGKEFGKQ 1070 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI-----SDYDDDSVLRVAEQWKSGVPV 1206 I S++ D K LR+ + ++ + + + + D+ +L A+ W GV + Sbjct: 1071 IASMLED-KTRDFAKELRAKMLEIANAINEKDPLTIHVLENCSDEELLEYAKDWSKGVKM 1129 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 + PVF+G +E + +A + G+ LYDG TGE V VGY+YM+KL+H+V +K Sbjct: 1130 AIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVGYMYMIKLHHLVDEK 1189 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 V+ARSTG YSLVT QP+GGK+ GGQR GEMEVW ++AYGAA+ L+EMLTIKSDD+ GR Sbjct: 1190 VHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTIKSDDIRGRE 1249 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA-----KMEEIP--- 1378 Y +I G E+ PE+F VL KE+Q+L L I++ ++E Sbjct: 1250 NAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDGAPKPIVIKEDDRPK 1309 Query: 1379 DFNKCEL 1385 DF+ +L Sbjct: 1310 DFSSFQL 1316 Score = 39.3 bits (90), Expect = 5.0, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPI 346 G + + + + G + ED+++ T EI + A +IDE+ +++ + I+ I I Sbjct: 2108 GSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVIEAGIKSITI 2162 >gi|21672996|ref|NP_661061.1| DNA-directed RNA polymerase subunit beta [Chlorobium tepidum TLS] gi|41017753|sp|Q8KG15|RPOB_CHLTE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|21646059|gb|AAM71403.1| DNA-directed RNA polymerase, beta subunit [Chlorobium tepidum TLS] Length = 1303 Score = 1251 bits (3236), Expect = 0.0, Method: Composition-based stats. Identities = 579/1404 (41%), Positives = 811/1404 (57%), Gaps = 170/1404 (12%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 F K II+ PDL++VQ S+ +F+ ++ ++R ++GL+ +S FPIT G +LE Sbjct: 13 DFSKIQSIINPPDLLKVQLDSFHNFIQDSVPLEKRKDQGLEKVLRSAFPITDTRGLYLLE 72 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 ++SY FD PK+ V++C+ R LTY V LKI L+L D K+ +Q +Y+G + Sbjct: 73 YISYSFDKPKYTVEECIERGLTYDVSLKIKLKLSYKD---EADEPDWKETIQQEVYLGRI 129 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 P MT GTF+I G +R+VV+QLHRSPG+ F +GK +Y+ +I+P +G W++ + Sbjct: 130 PYMTDRGTFIINGAERVVVAQLHRSPGVVFSE---AVHPNGKKMYSAKIVPTRGSWIEFQ 186 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWCFPLSAADL 254 D + I V ID+++ VT+ L A+G +E IL F + Sbjct: 187 TDINNQIFVYIDQKKNFLVTALLRAIGFAKDEDILGLFDLVEEVEVSSKSSKR-----EQ 241 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 ++G ++S ++D+ TGE + + +T ++ + G K + + + Sbjct: 242 LLGQYLASDIIDMTTGEV-VPARAAITEEIIDQIVAAGYKTVKVMK-----------TTS 289 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 E G + + I NT++ D + ++AL Sbjct: 290 PEKGV----------------------------------DKSVIINTILNDSSATEEEAL 315 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD----------- 423 +Y +R + A S FF+ KYDL VGR ++ +L + Sbjct: 316 EIVYEELRSNEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIQKKLQNELAELSAYLEKR 375 Query: 424 -------------------------TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDN 458 +D+ + DIIA+I L+ L NG +DD+D+ Sbjct: 376 PELKELSDAIYERILQTISTYSEEPIGEDILVLTHYDIIAVINYLIKLINGMAEVDDVDH 435 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 L NRRVRSVGE L Q+ +GL RM ++++E+++S D D + P DLINA+ V S V FF Sbjct: 436 LANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDTDKIAPADLINARTVSSVVSSFFA 495 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 +SQLSQ + N L+ +T+ RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG Sbjct: 496 TSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGP 555 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 NIGL+SSL+ +A +N GFI+TPYR V +G+VT+ VV LSA +EEN+ + LDE+ Sbjct: 556 NIGLISSLSVYAEINDKGFIQTPYRVVENGQVTDKVVMLSAEDEENKITVPVSIELDENN 615 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 E V R G+ LV E+++++D SP Q+VS AA+LIPFLE+DD NR LMG NMQR Sbjct: 616 RIAAESVQARTKGDYPLVLAEEVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQR 675 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD----- 753 QAVPLL +EAP VGTGME+ VA+ S A IVA+ G+V+ V A RI +R + Sbjct: 676 QAVPLLVSEAPIVGTGMEAKVARDSRAVIVAEGPGVVQCVTADRIEVRYDLDPENNTVSL 735 Query: 754 -PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 GV +Y+L+KF+RSNQ+TC++QRPLV G V D++AD STD G+LALG+N+L Sbjct: 736 LDPDEGVKVYKLIKFKRSNQDTCISQRPLVHNGQRVNAGDVLADSSSTDNGELALGKNVL 795 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW GYNFED++++SER+V +DVFTSIH+ EFE RDTK G E+ TRDI NVSE+ Sbjct: 796 VAFMPWRGYNFEDAIVLSERLVYDDVFTSIHVHEFESSVRDTKRGEEQFTRDIYNVSEDA 855 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L+N+DE GI+ +GAEV DILVGKITPKGES TPEEKLLRAIFG+K+ DV+D S+ VP Sbjct: 856 LRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHVP 915 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +G+ G V+ ++F+R ++ +E++E + + D ++ L + + L G Sbjct: 916 AGMKGIVIKTKLFSR-----KKKIGMDVKERMEAIDKQFDLKEADLRSRFAKWMKQYLNG 970 Query: 993 QNAV-----SGPKGFKKSTVLSSDLISEYP------RSQWWQFAVQDEKVQRNVESLKVQ 1041 + +V G + TV+ L++++ + V K NV L + Sbjct: 971 KKSVAITSDKGKVLVPEGTVIDEALLAKFNGLPFLESIDLSKGIVSGAKTNENVVRLIRE 1030 Query: 1042 YETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVS 1101 Y L D +N+ KI GD++PPG+ + KV++A KR IQ GDKMAGRHGNKG+V Sbjct: 1031 YRLKLKDLSDERENEKYKINVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVVG 1090 Query: 1102 RILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKA 1161 +ILP EDMPF++DGTPVDIVLNPLGVPSRMN+GQ++ET LGWA LG K K+ I Sbjct: 1091 KILPIEDMPFMEDGTPVDIVLNPLGVPSRMNIGQLYETSLGWAGKKLGVKFKTPIFSGAT 1150 Query: 1162 NGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINS 1221 ++ FD Sbjct: 1151 YTEVQEYLEKAGLPGHGKVKL----------------------------FD--------- 1173 Query: 1222 MLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQ 1281 G TGE F VTVGYIYMLKL+H+V DK++ARS G YSL+TQQ Sbjct: 1174 -----------------GRTGEQFHDEVTVGYIYMLKLSHLVDDKIHARSIGPYSLITQQ 1216 Query: 1282 PLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFET 1341 PLGGK+ GGQR GEMEVW ++AYGAA +L+EMLT+KSDDV+GR + YE+IV G + E Sbjct: 1217 PLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPEP 1276 Query: 1342 GTPESFNVLVKEMQALGLSIDLEN 1365 GTPESFNVL++E+Q LGL I +++ Sbjct: 1277 GTPESFNVLIRELQGLGLEIRIDD 1300 >gi|193213522|ref|YP_001999475.1| DNA-directed RNA polymerase subunit beta [Chlorobaculum parvum NCIB 8327] gi|193086999|gb|ACF12275.1| DNA-directed RNA polymerase, beta subunit [Chlorobaculum parvum NCIB 8327] Length = 1301 Score = 1250 bits (3234), Expect = 0.0, Method: Composition-based stats. Identities = 578/1404 (41%), Positives = 812/1404 (57%), Gaps = 170/1404 (12%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 F K II+ PDL++VQ S+ +F+ ++ +R ++GL+ +S FPIT G +LE Sbjct: 11 DFSKIQSIINPPDLLKVQLDSFHNFIQDSVPLAKRKDQGLEKVLRSAFPITDTRGLYLLE 70 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 ++SY FD PK+ V++C+ R LTY V LKI L+L D K+ +Q +Y+G + Sbjct: 71 YISYSFDKPKYTVEECIERGLTYDVSLKIKLKLSYKD---EADEPDWKETIQQEVYLGRI 127 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 P MT+ GTF++ G +R+VV+QLHRSPG+ F +GK +Y+ +I+P +G W++ + Sbjct: 128 PYMTERGTFIVNGAERVVVAQLHRSPGVVFSE---AVHPNGKKMYSAKIVPTRGSWIEFQ 184 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWCFPLSAADL 254 D + I V ID+++ VT+ L A+G +E IL+ F + Sbjct: 185 TDINNQIFVYIDQKKNFLVTALLRAIGFAKDEDILALFDLVEEVEVSSKSAKR-----EQ 239 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 ++G ++S ++D++TGE + + +T +L + G K + + + Sbjct: 240 LLGQYLASDIIDMNTGEV-VSARSAITEDILDQIVAAGYKTIKVMK-----------TTS 287 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 E G + + I NT++ D + ++AL Sbjct: 288 PEKGV----------------------------------DKSVIINTILNDSSATEEEAL 313 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD----------- 423 +Y +R + A S FF+ KYDL VGR ++ +L+ + Sbjct: 314 EIVYEELRSNEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIQKKLHNELTELSSYLEER 373 Query: 424 -------------------------TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDN 458 +D+ + DIIA+I L+ L NG +DD+D+ Sbjct: 374 PELKELSDAIYERILQTISTYSEEPIGEDILVLTHYDIIAVINYLIKLVNGMAEVDDVDH 433 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 L NRRVRSVGE L Q+ +GL RM ++++E+++S D D + P DLINA+ V S V FF Sbjct: 434 LANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDTDKIAPADLINARTVSSVVSSFFA 493 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 +SQLSQ + N L+ +T+ RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG Sbjct: 494 TSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGP 553 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 NIGL+SSL+ +A +N GFI+TPYR V G VT+ V+ LSA +EEN+ + LDE+ Sbjct: 554 NIGLISSLSVYAEINDKGFIQTPYRVVDKGLVTDKVLMLSAEDEENKITVPVSIELDENN 613 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 E V R G+ LV E ++++D SP Q+VS AA+LIPFLE+DD NR LMG NMQR Sbjct: 614 RIAAESVQARTKGDYPLVLAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQR 673 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD----- 753 QAVPLL ++AP VGTGME+ VA+ S A IVA+ G+V+ V A RI +R + Sbjct: 674 QAVPLLVSDAPVVGTGMEAKVARDSRAVIVAEGPGVVQNVTAERIEVRYDLDPENNTVSL 733 Query: 754 -PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 GV +Y+L+KF+RSNQ+TC++QRPLV G V D++AD STD G+LALG+N+L Sbjct: 734 LDPDEGVKVYKLIKFKRSNQDTCISQRPLVHNGQRVDAGDVLADSSSTDNGELALGKNVL 793 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW GYNFED++++SER+V +DVFTSIH+ EFE RDTK G E+ TRDI NVSE+ Sbjct: 794 VAFMPWRGYNFEDAIVLSERLVYDDVFTSIHVHEFESNVRDTKRGEEQFTRDIYNVSEDA 853 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L+N+DE GI+ +GAEV DILVGKITPKGES TPEEKLLRAIFG+K+ DV+D S+ VP Sbjct: 854 LRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHVP 913 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +G+ G V+ ++F+R ++ +E++E + + D ++ L + + L G Sbjct: 914 AGMKGIVIKTKLFSR-----KKKIGMDVKERMEAIDKQFDLKEADLRSRFAKWMKQHLNG 968 Query: 993 QNAV-----SGPKGFKKSTVLSSDLISEYP------RSQWWQFAVQDEKVQRNVESLKVQ 1041 + +V G + TV+ L++++ + V K NV L + Sbjct: 969 KKSVAITSDKGKVLVPEGTVIDEALLAKFNGLPFLESIDVSKGIVSGAKTNENVVRLIRE 1028 Query: 1042 YETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVS 1101 Y LED +N+ K+ GD++PPG+ + KV++A KR IQ GDKMAGRHGNKG+V Sbjct: 1029 YRLKLKDLEDERENEKYKVNVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVVG 1088 Query: 1102 RILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKA 1161 +ILP EDMPF+ DGTPVDIVLNPLGVPSRMN+GQ++ET LGWA LG K K+ I + Sbjct: 1089 KILPIEDMPFMADGTPVDIVLNPLGVPSRMNIGQLYETSLGWAGKKLGVKFKTPIFNGAT 1148 Query: 1162 NGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINS 1221 ++ FD Sbjct: 1149 YKEVQENLEKAGLPGHGKVKL----------------------------FD--------- 1171 Query: 1222 MLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQ 1281 G TGE F VTVGYIYMLKL+H+V DK++ARS G YSL+TQQ Sbjct: 1172 -----------------GRTGEQFHDEVTVGYIYMLKLSHLVDDKIHARSIGPYSLITQQ 1214 Query: 1282 PLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFET 1341 PLGGK+ GGQR GEMEVW ++AYGAA +L+EMLT+KSDDV+GR + YE+IV G + E Sbjct: 1215 PLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPEP 1274 Query: 1342 GTPESFNVLVKEMQALGLSIDLEN 1365 GTPESFNVLV+E+Q LGL I +++ Sbjct: 1275 GTPESFNVLVRELQGLGLEIRIDD 1298 >gi|194337661|ref|YP_002019455.1| DNA-directed RNA polymerase, beta subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194310138|gb|ACF44838.1| DNA-directed RNA polymerase, beta subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 1303 Score = 1249 bits (3233), Expect = 0.0, Method: Composition-based stats. Identities = 574/1406 (40%), Positives = 819/1406 (58%), Gaps = 172/1406 (12%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 F K II+ PDL++VQ S+ +F+ ++ +R ++GL+ + FPIT G +LE Sbjct: 13 DFSKIQSIIEPPDLLKVQLDSFHNFIQDSVPLAKRKDQGLERVLRGAFPITDTRGLYLLE 72 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 ++SY FD PK+ ++DC+ R LTY V LK+ L+L D + T K +Q +Y+G + Sbjct: 73 YISYSFDKPKYTIEDCIERGLTYDVSLKVKLKLSYKDEADETDWKET---IQQEVYLGRI 129 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 P MT GTF++ G +R+VV+QLHRSPG+ F +GK +Y+ +I+P +G W++ + Sbjct: 130 PYMTNRGTFIVNGAERVVVAQLHRSPGVVFSE---AVHPNGKKMYSAKIVPTRGSWIEFQ 186 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGM-DSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 D + I V ID+++ V++ L A+G E+IL F + + Sbjct: 187 TDINNQIFVYIDQKKNFLVSALLRAIGFARDEDILGLFDLVEELPLKSSK-------KEQ 239 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 +VG ++S +VD+ TGE + + +T + + + G K + + G Sbjct: 240 LVGQYLASDIVDMQTGEV-VSARTAITEDIFEQILAAGYKSVKVMKTFAGG--------- 289 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 D + + I NT++ D + ++AL Sbjct: 290 -----------------------------------DKGVDKSIIINTILNDNSATEEEAL 314 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP--------- 425 +Y +R + A S FF+ KYDL VGR ++ +L + Sbjct: 315 EIVYEELRANEAPDIDAARSFLERTFFNQKKYDLGEVGRYRIKKKLAKEFDDLTAYLAEK 374 Query: 426 ---------------------------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDN 458 +D+ + DII++I L+ L NG +DD+D+ Sbjct: 375 PELKQLSDTIYEKILQTIQSFSDEPTGEDILVLTHYDIISVIYYLIKLVNGLADVDDVDH 434 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 L NRRVRSVGE L Q+ +GL RM ++++E+++S D D + P DLINA+ V S V FF Sbjct: 435 LANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDSDKIAPADLINARTVSSVVSSFFA 494 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 +SQLSQ + N L+ +T+ RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG Sbjct: 495 TSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGP 554 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 NIGL+SSL+ +A +N GFI+TPYR V G+VT+ V+ LSA +EEN+ + LDE+ Sbjct: 555 NIGLISSLSVYAEINDKGFIQTPYRVVDKGQVTDTVLMLSAEDEENKITVPVSVPLDENR 614 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 E V R G+ +V E ++++D SP Q+VS AA+LIPFLE+DD NR LMG NMQR Sbjct: 615 KIAMETVQARTKGDYPVVAAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQR 674 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD----- 753 QAVPLL +EAP VGTGME+ VA+ S + IVA+ AG++E V A I +R + Sbjct: 675 QAVPLLTSEAPVVGTGMEAKVARDSRSVIVAEGAGVLEDVTAEYIQVRYDLNPDNDVRLS 734 Query: 754 --PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 G+ Y+L+KF+RSNQ+TC++Q+PLV +G V + ++AD STD G+LALG+N+ Sbjct: 735 MLDPDEGLKTYKLIKFKRSNQDTCISQKPLVHIGQRVEKGTVLADSSSTDNGELALGKNV 794 Query: 812 LVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE 871 LVAFMPW GYNFED++++SER+V +DVFTSIHI EFE RDTK G E+ TRDI NVS+E Sbjct: 795 LVAFMPWRGYNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDIYNVSDE 854 Query: 872 GLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRV 931 L+N+DE GI+ +GAEV DILVGKITPKGES TPEEKLLRAIFG+K+ DV+D S+ V Sbjct: 855 ALRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHV 914 Query: 932 PSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEIL- 990 P+G+ G V+ ++F+R ++ +E++E++ + D ++ L + + ++L Sbjct: 915 PAGMKGIVIKTKLFSR-----KKKVGMDVKEKLEVVDKRFDSKEYDLRKRFAKWIKQLLG 969 Query: 991 ----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFA------VQDEKVQRNVESLKV 1040 G G + + +V L++++ + + +KV NV L Sbjct: 970 GKSSVGVYNDKGKQLIAEGSVYDEILLAKFSAMPFLESIDFTKGLTDSKKVNDNVIRLVK 1029 Query: 1041 QYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIV 1100 ++ L D N+ KI GD++PPG+ + KV++A KR IQ GDKMAGRHGNKG+V Sbjct: 1030 EFRFMLKDLADERDNEKYKINVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVV 1089 Query: 1101 SRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK 1160 +IL EDMPF+ DGTPVDIVLNPLGVPSRMN+GQ++ET LGWA LG K K+ I + Sbjct: 1090 GKILSIEDMPFMADGTPVDIVLNPLGVPSRMNIGQLYETSLGWAAKKLGVKFKTPIFNGA 1149 Query: 1161 ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAIN 1220 ++ AE ++G+P Sbjct: 1150 TYEEVQ------------------------------AELERAGLPA-------------- 1165 Query: 1221 SMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQ 1280 G+ L+DG TGE FD VT+GYIYMLKL+H+V DK++ARSTG YSL+TQ Sbjct: 1166 ----------HGKVSLFDGRTGERFDDEVTIGYIYMLKLSHLVDDKIHARSTGPYSLITQ 1215 Query: 1281 QPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFE 1340 QPLGGK+ GGQR GEMEVW ++AYGAA +L+EMLT+KSDDV+GR + YE+IV G + E Sbjct: 1216 QPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPE 1275 Query: 1341 TGTPESFNVLVKEMQALGLSIDLENS 1366 G PESFNVLV+E+Q LGL I +++ Sbjct: 1276 PGIPESFNVLVRELQGLGLEIRIDDK 1301 >gi|255311116|ref|ZP_05353686.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis 6276] gi|255317417|ref|ZP_05358663.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis 6276s] gi|296435831|gb|ADH18005.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis G/9768] gi|296437691|gb|ADH19852.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis G/11074] gi|297140190|gb|ADH96948.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis G/9301] Length = 1252 Score = 1248 bits (3230), Expect = 0.0, Method: Composition-based stats. Identities = 598/1370 (43%), Positives = 825/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG ++ +I+ F+ S Sbjct: 172 EAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEEFFSVEERSL-------- 223 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L++ V L G + Sbjct: 224 --------------------------------------RLEKDFVA--------LVGKVL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 238 ADNVVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAV--GADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T A S LFFD+ +Y+L VGR K+N +L D+ Sbjct: 296 SYEAALKDFYRRLRPGEPATLVNARSTIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDDET 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA++ LDE F + + R GE + Sbjct: 536 YRVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYNMFKTPVCWARYKGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 596 THMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA IVA+ G+VE VD+ IV+ D Y+L KF RSN TC+NQ PL Sbjct: 656 DSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DRYQLKKFLRSNSGTCINQTPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISER++ +D +TS Sbjct: 711 CSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GI+ +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLI 1013 ++ L ++ + L +L +L + A S ++ + + I Sbjct: 891 AVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 951 ELLERESLVDLLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 I L +S L+DG TGE FD V VG Sbjct: 1108 --------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|76789037|ref|YP_328123.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis A/HAR-13] gi|88909129|sp|Q3KM47|RPOB_CHLTA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|76167567|gb|AAX50575.1| DNA-directed RNA polymerase beta chain [Chlamydia trachomatis A/HAR-13] Length = 1252 Score = 1248 bits (3229), Expect = 0.0, Method: Composition-based stats. Identities = 598/1370 (43%), Positives = 825/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG ++ +I+ F+ S Sbjct: 172 EAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEEFFSVEERSL-------- 223 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L++ V L G + Sbjct: 224 --------------------------------------RLEKDFVA--------LVGKVL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 238 ADNVVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAV--GADENHPIIKMLTKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T A S LFFD+ +Y+L VGR K+N +L D+ Sbjct: 296 SYEAALKDFYRRLRPGEPATLVNARSTIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDDET 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA++ LDE F + + R GE + Sbjct: 536 YRVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYNMFKTPVCWARYKGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 596 THMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA IVA+ G+VE VD+ IV+ D Y+L KF RSN TC+NQ PL Sbjct: 656 DSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DRYQLKKFLRSNSGTCINQTPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISER++ +D +TS Sbjct: 711 CSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GI+ +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLI 1013 ++ L ++ + L +L +L + A S ++ + + I Sbjct: 891 AVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 951 ELLERESLVDLLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 I L +S L+DG TGE FD V VG Sbjct: 1108 --------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|145220408|ref|YP_001131117.1| DNA-directed RNA polymerase subunit beta [Prosthecochloris vibrioformis DSM 265] gi|145206572|gb|ABP37615.1| DNA-directed RNA polymerase subunit beta [Chlorobium phaeovibrioides DSM 265] Length = 1301 Score = 1247 bits (3226), Expect = 0.0, Method: Composition-based stats. Identities = 571/1405 (40%), Positives = 817/1405 (58%), Gaps = 172/1405 (12%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 F K +I PDL++VQ S+ +F+ ++ +R ++GL+ +S FPIT G +LE Sbjct: 11 DFSKIQSVIKAPDLLKVQLDSFHNFIQDSVPLAKRRDQGLERVLRSAFPITDTRGLYLLE 70 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 ++SY FD PK+ V+DC+ R LTY V LK+ L+L D + T K Q +Y+G + Sbjct: 71 YISYSFDKPKYTVEDCIERGLTYDVSLKVKLKLSYKDEADETDWKETLQ---QEVYLGRI 127 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 P MT+ GTF++ G +R+VV+QLHRSPG+ F +GK +Y+ +I+P +G W++ + Sbjct: 128 PYMTERGTFIVNGAERVVVAQLHRSPGVVFSE---AIHPNGKKMYSAKIVPTRGSWIEFQ 184 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGM-DSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 D + I V ID+++ VT+ L A+G E+IL F +G D Sbjct: 185 TDINNQIFVYIDQKKNFLVTALLRAIGFARDEDILGLFDLVEEVQLKG-------VKKDR 237 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 ++G +++ +VD++TGE + + +T +L+ + G K + + G Sbjct: 238 LIGQYLAADIVDMNTGEV-VSARTAITEEVLEQIIAAGQKSVKVMKTFNGG--------- 287 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 D + + + NT++ D + ++AL Sbjct: 288 -----------------------------------DKGQDKSIVSNTILNDSSATEEEAL 312 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP--------- 425 +Y +R + A S FF+ KYDL VGR ++ +L+ + Sbjct: 313 EIVYEELRANEAPDIDAARSFLERTFFNQKKYDLGEVGRYRIRKKLSNEFSELESYLAGK 372 Query: 426 ---------------------------DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDN 458 +D + DII++I L+ L NG+ +DD+D+ Sbjct: 373 GELKELSDAISAKINQTIQSFSDEPVGEDTLVLTHYDIISVINYLIKLVNGQAEVDDVDH 432 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 L NRRVRSVGE L Q+ +GL RM ++++E+++S D D + P DLINA+ V S V FF Sbjct: 433 LANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDSDKIAPSDLINARTVSSVVSSFFA 492 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 +SQLSQ + N L+ +T+ RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG Sbjct: 493 TSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGP 552 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 NIGL+SSL+ +A +N GFI+TPYR V G VT++V+ LSA +EEN+ + LD+ Sbjct: 553 NIGLISSLSVYAEINDKGFIQTPYRVVNKGHVTDEVLMLSAEDEENKITVPVSIKLDDKN 612 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 + +E V R G+ LVP E ++++D SP Q+VS AA+LIPFLE+DD NR LMG NMQR Sbjct: 613 TIVDESVQARTKGDYPLVPSEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQR 672 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGD------- 751 QAVPLL +EAP VGTGME VA+ S + + + +G+VE+V A I +R Sbjct: 673 QAVPLLTSEAPVVGTGMEEKVARDSRSVCLGEGSGVVEEVTAEYIKVRYDINPDSNEELS 732 Query: 752 LDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 L G+ YR++KF+RSNQ+TC++Q+PLV G +V + ++AD ST+ G+LALG+N+ Sbjct: 733 LLDPDEGLKTYRMIKFKRSNQDTCISQKPLVHNGQKVEKGTVLADSSSTENGELALGKNV 792 Query: 812 LVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE 871 LVAFMPW GYNFED++++SER+V +DVFTSIH+ EFE RDTK G E+ TRDI NVS+E Sbjct: 793 LVAFMPWRGYNFEDAIILSERLVYDDVFTSIHVHEFEANVRDTKRGEEQFTRDIYNVSDE 852 Query: 872 GLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRV 931 L+N+DE GI+ +GAEV DILVGKITPKGES TPEEKLLRAIFG+K+ DV+D S+ V Sbjct: 853 ALRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHV 912 Query: 932 PSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILC 991 P+G+ G V+ ++F+R ++ +E++EL+ + + L + L +IL Sbjct: 913 PAGMKGIVIKTKLFSR-----KKKVGMDVKEKLELIDSRFERREQDLRISFEKWLHKILQ 967 Query: 992 GQNAVSGPKGFKKSTVLSSDL-----------ISEYPRSQWWQFAVQDEKVQRNVESLKV 1040 G+ K+ + +S + +KV +V L Sbjct: 968 GKETTGLQSDKGKTLAAAGAKFDAALISKFAGLSFLETVDFSNGITGTKKVDDSVIRLVK 1027 Query: 1041 QYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIV 1100 ++ L D +N+ K+ GD++PPG+ + KV++A KR IQ GDKMAGRHGNKG+V Sbjct: 1028 EFRFKLKDLADERENEKYKVNVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVV 1087 Query: 1101 SRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK 1160 +ILP EDMPF+ DG PVDIVLNPLGVPSRMN+GQ++ET LGWA LG K K+ I + Sbjct: 1088 GKILPIEDMPFMADGKPVDIVLNPLGVPSRMNIGQLYETSLGWAAKTLGVKFKTPIFNGA 1147 Query: 1161 ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAIN 1220 ++ AE ++G+P Sbjct: 1148 TYEEVQ------------------------------AELERAGLPA-------------- 1163 Query: 1221 SMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQ 1280 G+ LYDG TGE FD VTVGYIYMLKL+H+V DK++ARSTG YSL+TQ Sbjct: 1164 ----------HGKVSLYDGRTGERFDDEVTVGYIYMLKLSHLVDDKIHARSTGPYSLITQ 1213 Query: 1281 QPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFE 1340 QPLGGK+ GGQR GEMEVW ++AYGAA +L+EMLT+KSDDV+GR + YE+IV G + + Sbjct: 1214 QPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPD 1273 Query: 1341 TGTPESFNVLVKEMQALGLSIDLEN 1365 G PESFNVL++E+Q LGL + +++ Sbjct: 1274 PGIPESFNVLIRELQGLGLEVRIDD 1298 >gi|237802738|ref|YP_002887932.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis B/Jali20/OT] gi|231273972|emb|CAX10764.1| DNA-directed RNA polymerase beta chain [Chlamydia trachomatis B/Jali20/OT] Length = 1252 Score = 1246 bits (3225), Expect = 0.0, Method: Composition-based stats. Identities = 599/1370 (43%), Positives = 826/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG ++ +I+ F+ S Sbjct: 172 EAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEEFFSVEERSL-------- 223 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L++ V L G + Sbjct: 224 --------------------------------------RLEKDFVA--------LVGKVL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 238 ADNVVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAV--GADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T A S LFFD+ +Y+L VGR K+N +L D+ Sbjct: 296 SYEAALKDFYRRLRPGEPATLVNARSTIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDDET 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA++ LDE F + + R GE + Sbjct: 536 YRVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYNMFKTPVCWARYKGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 596 THMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA IVA+ G+VE VD+ IV+ D Y+L KF RSN TC+NQ PL Sbjct: 656 DSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DRYQLKKFLRSNSGTCINQTPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISER++ +D +TS Sbjct: 711 CSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GI+ +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLI 1013 ++ L ++ + L +L +L + A S ++S + + I Sbjct: 891 AVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPATIIHRRSADILVQESAIFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 951 ELLERESLVDLLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 I L +S L+DG TGE FD V VG Sbjct: 1108 --------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|15605036|ref|NP_219820.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis D/UW-3/CX] gi|290463293|sp|P0CE09|RPOB_CHLTR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|3328732|gb|AAC67908.1| RNA Polymerase Beta [Chlamydia trachomatis D/UW-3/CX] gi|297748444|gb|ADI50990.1| DNA-directed RNA polymerase beta chain [Chlamydia trachomatis D-EC] gi|297749324|gb|ADI52002.1| DNA-directed RNA polymerase beta chain [Chlamydia trachomatis D-LC] Length = 1252 Score = 1246 bits (3225), Expect = 0.0, Method: Composition-based stats. Identities = 597/1370 (43%), Positives = 825/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG ++ +I+ F+ S Sbjct: 172 EAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEEFFSVEERSL-------- 223 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L++ V L G + Sbjct: 224 --------------------------------------RLEKDFVA--------LVGKVL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 238 ADNVVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAV--GADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T A S LFFD+ +Y+L VGR K+N +L D+ Sbjct: 296 SYEAALKDFYRRLRPGEPATLVNARSTIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDDET 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA++ LDE F + + R GE + Sbjct: 536 YRVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYDMFKTPVCWARYKGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 596 THMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA IVA+ G+VE VD+ IV+ D Y+L KF RSN TC+NQ PL Sbjct: 656 DSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DRYQLKKFLRSNSGTCINQTPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISER++ +D +TS Sbjct: 711 CSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E G++ +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGVVRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLI 1013 ++ L ++ + L +L +L + A S ++ + + I Sbjct: 891 AVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 951 ELLERESLVDLLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 I L +S L+DG TGE FD V VG Sbjct: 1108 --------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|41017813|sp|Q9X6Y1|RPOB_AQUPY RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|4753643|emb|CAA52957.1| DNA dependent RNA polymerase [Aquifex pyrophilus] Length = 1469 Score = 1246 bits (3224), Expect = 0.0, Method: Composition-based stats. Identities = 616/1484 (41%), Positives = 880/1484 (59%), Gaps = 137/1484 (9%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 RKFFG+ EI++ P L+ + K S+++F+ + + P +R N GL+ F++ FP + Sbjct: 8 RKFFGRRTEILEPPYLLSIPKNSFENFVQLKVNPYKRKNVGLEHIFRTSFPFKDPDENFI 67 Query: 74 LEFVSYEFD--------------------------------PPKFDVDDCLWRDLTYAVP 101 LE++ YE KF ++C + LTY+ P Sbjct: 68 LEYLGYEIGDWECNRCGYKPKDDLLGGWDVDCPECGAKLVYKEKFTPEECKLKGLTYSAP 127 Query: 102 LKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSP 161 L++ L+L + + K +Y G++PLMT +G+F+I G +RI+++QL RS Sbjct: 128 LRVMLQLKAKTKNGYRTFPPRK------VYFGEVPLMTDNGSFIINGTERIIINQLIRSS 181 Query: 162 GIHFDH--DKGRASLSGKLLYACRIIPDQGLWMDIEFD-SKDIIHVRIDRRRKVPVTSFL 218 G+ FD +K + + ++LY IIPD+G ++ E + D+I RIDR+ K+ S L Sbjct: 182 GVFFDEKEEKQKDATITRILYRASIIPDKGSRVEFELSGATDLISARIDRK-KLSAISVL 240 Query: 219 MALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESG 277 A G+++ +IL FY + D + + + + + +++ Sbjct: 241 RAFGLETAYDILKPFYEGVRKYIVKDKYLYDAETGEEFTPEDLEHHYIFA-----ILKFK 295 Query: 278 KKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIF 337 K+ +E + + L I++ E E+ + + +++ + Sbjct: 296 AKIAGFGTSKEREIIEERYIEEWEELV------RILDDERIEVL--SVTSVPRENVIKSP 347 Query: 338 HSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDA-LLDIYRVMRPGDVSTFSV----- 391 + L D+ +A R+ + +D L+++Y+ +R + T + Sbjct: 348 -YGKSLVDTLATDTSPRDADRRSPVKVPAEYTLRDYGLMEMYKKLRHIEALTMEIDSIIE 406 Query: 392 -AESMFNFLFFDSDKYDLSTVGRVKMN--------------------------------- 417 A FN F D +YDLS VGRVK+N Sbjct: 407 RARVYFNVFFRDLKRYDLSRVGRVKINAKVHNIPKVLKPTDIDLLDNLPPLALAEDYGEY 466 Query: 418 --------------------MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDID 457 +++ T D+ R + D+I I+K L+DLR+G+ DDI Sbjct: 467 KAGTRITKELLKELFKNYKEIKVKDYTEDEARFLLPIDLINILKYLIDLRHGRVKKDDIA 526 Query: 458 NLGNRRVRSVGEMLKNQYRLGLLRMERSIKER--ISSVDIDSVMPQDLINAKPVVSAVCE 515 +LGNRRVRSVGE+L+NQ RLG+ +ME+ ++R + + PQD IN + V +A+ + Sbjct: 527 HLGNRRVRSVGELLENQARLGIAKMEKVFRDRSATIHPEQPDLKPQDFINPRYVTNAIAD 586 Query: 516 FFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETS 575 F + QLSQ ++ N LS +TH RRLSALG GG+ R A E+RDVHP+HYGRICP ET Sbjct: 587 FLKTGQLSQYLDNTNPLSELTHKRRLSALGPGGLTRESAKFEIRDVHPSHYGRICPIETP 646 Query: 576 EGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLD 635 EG NIGLV+S T +ARVN YGF+ TPYRKV +G+VT+ + +L+A EEEN IAQ ++ D Sbjct: 647 EGQNIGLVTSPTVYARVNEYGFLITPYRKVENGRVTDKIEWLAAYEEENYVIAQ-STPTD 705 Query: 636 EDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCN 695 E+G E V R + LV E++D+ID SP+QV+S ++SLIPFLE+DD+NR LMG N Sbjct: 706 EEGRIKAEFVLARHKNDIRLVKPEQVDYIDVSPRQVISPSSSLIPFLEHDDANRALMGSN 765 Query: 696 MQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGD---L 752 MQRQAVPL+ +AP VGTGME +A+ S A +VAKR G+VE+VD +I++R + Sbjct: 766 MQRQAVPLIFTQAPLVGTGMEKKIARDSHAVVVAKRGGVVEEVDGSKIIVRVNPEEINLE 825 Query: 753 DPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 DP G+DIY L KF+R+NQ TCVNQRP+VK G+ V + IIADG STD G+LALG+++L Sbjct: 826 DPLDIGIDIYELRKFERTNQKTCVNQRPIVKKGERVEKGQIIADGHSTDRGELALGKDVL 885 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 VAFMPW GYNFED+++ISER+V EDV+TSIHIEE EV AR+TK+G EEITR IP V E Sbjct: 886 VAFMPWRGYNFEDAIVISERLVKEDVYTSIHIEELEVEARETKVGDEEITRQIPGVPERA 945 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 L ++DE GI+ VG V PGDILVGK+TPKGE+ +TPEEKLL+AIFGEK DV+D SLR P Sbjct: 946 LAHLDEHGIVRVGTYVKPGDILVGKVTPKGETRLTPEEKLLQAIFGEKTKDVKDASLRCP 1005 Query: 933 SGVSGTVVDVRIFNRHGID--KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEIL 990 GV G V+DV++F R G K+ + VERE++E L R+ + ++ +L + L ++ Sbjct: 1006 PGVEGIVIDVQVFTRKGGKAAKDMLAQKVEREELEALERELEKKKNLLMSGVEKVLKGLI 1065 Query: 991 CGQNAVSGPKGFKKS----TVLSSDLISEYPRSQWWQFA--VQDEKVQRNVESLKVQYET 1044 G+ K KK T ++ ++ EY + + DE++ + + + + T Sbjct: 1066 LGKKTDKDVKIGKKEIKKGTEITEEIFKEYSQYILARPENFFTDEELIKKIREIYTRSRT 1125 Query: 1045 SKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRIL 1104 +L+ ++ K E + D+PPGV+ +VKVF+A KR I+ GDKMAGRHGNKG++S +L Sbjct: 1126 QIDMLQKVYQEKKETLLKRRDLPPGVITLVKVFIANKRKIKVGDKMAGRHGNKGVISVVL 1185 Query: 1105 PCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGD 1164 P EDMPFL DGTPVDIVLNPLGVPSRMNVGQI ETHLGWA LGKKI +I + Sbjct: 1186 PVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAKELGKKIGEMIEKGRDRKA 1245 Query: 1165 ISPLRSFLEKVIGTGSHT-----EKISDYDDDSVLRVAEQW-KSGVPVSTPVFDGADEEA 1218 I+ + V E ++ ++ V + + G+P++TP F+GADE+A Sbjct: 1246 ITEYLKEIYAVGDENGENAKFIEEFLNSLSEEEFWSVVRDYAQRGIPMATPAFEGADEKA 1305 Query: 1219 INSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLV 1278 + +L+ A L ESG++ LYDG TGEPFD VTVGY++MLKL HMV DK++AR+TG YSLV Sbjct: 1306 VKELLKKAGLPESGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDKIHARATGPYSLV 1365 Query: 1279 TQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDT 1338 TQQPLGG++ GGQRLGEMEVW ++A+GAAY LQEMLT+KSDDV GR++VYE+IV G T Sbjct: 1366 TQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDVEGRSKVYEAIVKGKYT 1425 Query: 1339 FETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 + G PESF VLV+E++ L L++ N K ++E + K Sbjct: 1426 YTPGIPESFKVLVRELKGLSLNVKCMNGEEKPCDQVEIKEEEEK 1469 >gi|237804660|ref|YP_002888814.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis B/TZ1A828/OT] gi|231272960|emb|CAX09871.1| DNA-directed RNA polymerase beta chain [Chlamydia trachomatis B/TZ1A828/OT] Length = 1252 Score = 1245 bits (3222), Expect = 0.0, Method: Composition-based stats. Identities = 596/1370 (43%), Positives = 825/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY++ LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSITLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG ++ +I+ F+ S Sbjct: 172 EAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEEFFSVEERSL-------- 223 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L++ V L G + Sbjct: 224 --------------------------------------RLEKDFVA--------LVGKVL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 238 ADNVVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAV--GADENHPIIKMLTKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T A S LFFD+ +Y+L VGR K+N +L D+ Sbjct: 296 SYEAALKDFYRRLRPGEPATLVNARSTIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDDET 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA++ LDE F + + R GE + Sbjct: 536 YRVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYNMFKTPVCWARYKGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 596 THMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA IVA+ G+VE VD+ IV+ D Y+L KF RSN TC+NQ PL Sbjct: 656 DSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DRYQLKKFLRSNSGTCINQTPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISER++ +D +TS Sbjct: 711 CSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPN+SEE L N+ E GI+ +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNISEEVLANLGEDGIVRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLI 1013 ++ L ++ + L +L +L + A S ++ + + I Sbjct: 891 AVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 951 ELLERESLVDLLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 I L +S L+DG TGE FD V VG Sbjct: 1108 --------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|269302960|gb|ACZ33060.1| DNA-directed RNA polymerase, beta subunit [Chlamydophila pneumoniae LPCoLN] Length = 1252 Score = 1244 bits (3220), Expect = 0.0, Method: Composition-based stats. Identities = 593/1370 (43%), Positives = 826/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+LIE+Q SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDILDLPNLIEIQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 VLEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +PLMT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPLMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNILFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG S+ +I+ ++ Sbjct: 172 EAIFDINDLIYIHIDRKKRRRKILAITFIRALGYSSDADIIE-----EFFTIEESSLRSE 226 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L G + Sbjct: 227 KD-------------------------------------------------FALLVGRIL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A++I++ + +Y +AG+ + L+ + + I + I + N I L D Sbjct: 238 ADNIIDEASSLVYGKAGEKLSTAMLKRMLDAGIASVKIAVD--ADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T + A S LFFD +Y+L VGR K+N +L D+ Sbjct: 296 SYEAALKDFYRRLRPGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFSMDDEA 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ L+ G K +DDID+L NRRVRSVGE+++NQ R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLKMGDEKACVDDIDHLANRRVRSVGELIQNQCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D++ P +++AK + S + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIVRERMNLFDFSSDTLTPGKVVSAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA++SLDE FTE + + R AGE + Sbjct: 536 YRIVRDGIVTDEIEYMTADVEEECVIAQASASLDEYNMFTEPVCWVRYAGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQAVPLLK EAP VGTG+E AK Sbjct: 596 THMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPVVGTGLECRAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA +VA+ G+V+ VD ++V+ + Y L KF RSN TC+NQ+PL Sbjct: 656 DSGAIVVAEEDGVVDFVDGYKVVVAAKHNPTIK-----RTYHLKKFLRSNSGTCINQQPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD + + D+IADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISE+++ ED +TS Sbjct: 711 CAVGDVITKGDVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISEKLIREDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVS+E L N+ E GII +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSDEVLANLGEDGIIRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-------KSTVLSSDLI 1013 ++ L + ++ L +L +L + A + + + + + I Sbjct: 891 AVHLKDLQKGYKNQVATLKTEYREKLGALLLNEKAPAAIIHRRTAEIVVHEGLLFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 + + + ++ ++ L YET+ LE +K ++E I+ GD D+ GV+R Sbjct: 951 ERIEQEDLVDLLMPNCEMYEVLKGLLSDYETALQRLEINYKTEVEHIREGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMP+L +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 I L +S LYDG TGE FD V +G Sbjct: 1108 --------------------------IEQGLPEDG-----KSFLYDGKTGERFDNKVVIG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|294056237|ref|YP_003549895.1| DNA-directed RNA polymerase, beta subunit [Coraliomargarita akajimensis DSM 45221] gi|293615570|gb|ADE55725.1| DNA-directed RNA polymerase, beta subunit [Coraliomargarita akajimensis DSM 45221] Length = 1261 Score = 1243 bits (3217), Expect = 0.0, Method: Composition-based stats. Identities = 600/1382 (43%), Positives = 832/1382 (60%), Gaps = 142/1382 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R FG+ E+I P+LIE Q S+ FL M+ AP +R GL+A F VFPI ++ Sbjct: 3 ERINFGQIKEVIQPPNLIENQINSFKEFLQMDTAPSQRQPVGLEAVFSEVFPIESYDSRC 62 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE+VSY P+ + + +TY+V L + LRL + + IK++ IYM Sbjct: 63 HLEYVSYNVTAPRETEIEAIREGVTYSVSLYVKLRL-----------REEEHIKDEEIYM 111 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G+LP++T+ G+F+I G +R++VSQLHRSPGI F+ SGK+L+A RIIPD+G W+ Sbjct: 112 GELPMITERGSFIINGAERVIVSQLHRSPGIAFEES---VHTSGKILHAFRIIPDRGTWL 168 Query: 193 DIEFDSKDIIHVRIDRRR---KVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 +++FD D+++V +DRRR K +T+ L A+G S+ D Sbjct: 169 EVQFDQNDLLYVYLDRRRRRRKFLLTTLLRAMGYSSD---------------ADILNLFY 213 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 D+ V + + + L + Sbjct: 214 ELEDITVED--------------------------------------ALKRESVSNLVLT 235 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 EDIV+ + G + A + + + + + ++ + + +V++ A IR L D ++ Sbjct: 236 EDIVDADKGVVLARAFEPLTKTIVRSFEQAGLKSVTAIDT-TVDDGAIIR-CLKKDPTQN 293 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 ++AL DIY+ +RPG+ T + A+++ LF D +YDL VGR K+N +L +DT D R Sbjct: 294 EEEALKDIYKRLRPGEPPTTANAKALLKRLFQDPRRYDLGRVGRYKLNQKLKMDTDLDFR 353 Query: 430 HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKER 489 + +D++ K L L+ G GT+DDID+LG+RRVR+VGE+L NQ R GL R ER +KER Sbjct: 354 VVSADDVVEATKYLTRLKRGDGTLDDIDHLGSRRVRTVGELLANQCRTGLARTERLVKER 413 Query: 490 ISSVDI--DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ++ D DS+ PQ LIN K + + + +FF SQLSQ + +N L+ +TH RRLSALG G Sbjct: 414 MTLYDQSVDSITPQKLINPKALSTVIRDFFARSQLSQFMDQINPLAELTHKRRLSALGPG 473 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVHP+HYGRICP ET EG NIGL++SL++++R+N +GFIETPYRKV + Sbjct: 474 GLNRERAGFEVRDVHPSHYGRICPIETPEGPNIGLINSLSTYSRINEFGFIETPYRKVVE 533 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GKV +V YL+A EE +AQANS +DE+G+ V CR E I ++D++D S Sbjct: 534 GKVLEEVEYLNADMEEPFLVAQANSEMDEEGNLIG-RVTCRRQDEVIETEGTQVDYMDVS 592 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+VS+AA LIPFLE+DD+NR LMG NMQRQ VPLL+AEAPFVGTG+E+ VA S Sbjct: 593 PKQLVSVAAGLIPFLEHDDANRALMGSNMQRQGVPLLQAEAPFVGTGIENRVAIDSKTVE 652 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDL-------DPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 ++ G+V VDA R+++ G+ +Y L KF RSN TC NQ+P Sbjct: 653 ISDIDGVVASVDARRVIVTEDGELPARAKQLKTDPKKGIYVYNLRKFMRSNAGTCFNQKP 712 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V G V++ ++ADG ST+ GDLA+GRN+LVAFMPW+GYNFED++LISE++V ED+FT Sbjct: 713 IVSKGQPVKKGQVLADGASTEDGDLAIGRNILVAFMPWNGYNFEDAILISEKIVKEDIFT 772 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIH++EFEV ARDTKLGPEEITRDIPNV EE LK+++ G+I VGAEV PGDILVGKITP Sbjct: 773 SIHVDEFEVTARDTKLGPEEITRDIPNVGEEALKDLNHDGVIRVGAEVKPGDILVGKITP 832 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 K E+ + PEEKLLRAIFGEKA DV+DTSL VPSGV G V+DV++ R + + S S Sbjct: 833 KSETELAPEEKLLRAIFGEKAADVKDTSLVVPSGVRGIVMDVKVSARVDGEPEQMSASDR 892 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL------SSDLIS 1014 R QI+ + + + L ++ L IL G+ K + V+ + + Sbjct: 893 RRQIKKINEEYRSQSDRLREDLTEALSNILLGEKIPLDVKNGETDEVIIPANRKITKTLL 952 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + + V+ + + Y+ L+ + KIE I+ G+D GV++ V Sbjct: 953 RRLAAVSKHIEIDPSPVKIKIMEIVNNYQGKFDELDYDRERKIEGIESGEDADQGVIKSV 1012 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A KR +Q GDKMAGRHGNKG+V++I+P EDMP+L DGTPV+I LNPLGVPSRMNVG Sbjct: 1013 KVYIAKKRKMQVGDKMAGRHGNKGVVAKIVPEEDMPYLPDGTPVEICLNPLGVPSRMNVG 1072 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVL 1194 Q+ ETHLGWAC LG K+ + I D + + Sbjct: 1073 QVLETHLGWACKKLGIKVATPIFDGISEKRVREYLDEAGLPSTG---------------- 1116 Query: 1195 RVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYI 1254 SML G++ GE + V VGY+ Sbjct: 1117 -------------------------KSMLI------DGRT-------GEALHQEVVVGYM 1138 Query: 1255 YMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEM 1314 YMLKLNH+V+ K++AR+ G YSL+TQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+ Sbjct: 1139 YMLKLNHLVASKIHARAVGPYSLITQQPLGGKAQYGGQRFGEMEVWALEAYGAAYTLQEL 1198 Query: 1315 LTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 LT+KSDDV GRTR+YES+V G+ + E GTP+SFNVL+KE+Q+L L + LE+ + Sbjct: 1199 LTVKSDDVAGRTRIYESLVKGDSSLEAGTPQSFNVLMKEIQSLCLDVQLESKDKFDMGLT 1258 Query: 1375 EE 1376 + Sbjct: 1259 AD 1260 >gi|255506893|ref|ZP_05382532.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis D(s)2923] Length = 1252 Score = 1243 bits (3216), Expect = 0.0, Method: Composition-based stats. Identities = 596/1370 (43%), Positives = 822/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG ++ +I+ F Sbjct: 172 EAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEE---------------FF 216 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + K L G + Sbjct: 217 SVEERSLRSEK---------------------------------------DFVALVGKVL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 238 ADNVVDVDSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAV--GADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T + A S LFFD+ +Y+L VGR K+N +L D+ Sbjct: 296 SYEAALKDFYRRLRPGEPATLANARSTIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDDET 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA++ LDE F + + R GE + Sbjct: 536 YRVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYNMFKTPVCWARYKGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 596 THMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA IVA+ G+VE VD+ IV+ D Y+L KF RSN TC+NQ PL Sbjct: 656 DSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DRYQLKKFLRSNSGTCINQTPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISER++ +D +TS Sbjct: 711 CSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GI+ +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLI 1013 ++ L ++ + L +L +L + A S ++ + + I Sbjct: 891 AVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 951 ELLERESLVDLLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 I L +S L+DG TGE FD V VG Sbjct: 1108 --------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|15835206|ref|NP_296965.1| DNA-directed RNA polymerase subunit beta [Chlamydia muridarum Nigg] gi|270285378|ref|ZP_06194772.1| DNA-directed RNA polymerase subunit beta [Chlamydia muridarum Nigg] gi|7388085|sp|P56869|RPOB_CHLMU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|7190626|gb|AAF39421.1| DNA-directed RNA polymerase, beta subunit [Chlamydia muridarum Nigg] Length = 1252 Score = 1243 bits (3216), Expect = 0.0, Method: Composition-based stats. Identities = 596/1369 (43%), Positives = 820/1369 (59%), Gaps = 147/1369 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 + FD D+I++ IDR RRK+ +F+ ALG + D Sbjct: 172 EASFDINDLIYIHIDRKKRRRKILAMTFIRALGYST-----------------DADIIEE 214 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 A + V L G +A Sbjct: 215 FFAVEEHSLRSEKDFV------------------------------------ALVGKVLA 238 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 +++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 239 DNVVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAV--GADENHPIIKMLAKDPTDS 296 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD-- 427 + AL D YR +RPG+ +T + A S LFFDS +Y+L VGR K+N +L D+ Sbjct: 297 YEAALKDFYRRLRPGEPATLANARSTIMRLFFDSKRYNLGRVGRYKLNKKLGFPLDDETL 356 Query: 428 -VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME+ Sbjct: 357 SQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARMEK 416 Query: 485 SIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +TH RRLS Sbjct: 417 IVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRLS 476 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETPY Sbjct: 477 ALGPGGLNRERAGFEVRDVHSSHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPY 536 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ Y++A EE+ IAQA++ LDE F + + + R GE + Sbjct: 537 RVVRDGIVTDEIEYMTADVEEDCVIAQASAELDEYNMFKDSVCWARYKGEAFEADTSTVT 596 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 597 HMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAKD 656 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA +VA+ G+VE VD+ IV+ D Y L KF RSN TC+NQ PL Sbjct: 657 SGAIVVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DTYPLKKFLRSNSGTCINQTPLC 711 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISE+++ +D +TSI Sbjct: 712 SVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISEKLIKQDAYTSI 771 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GI+ +GAEV PGDILVGKITPK Sbjct: 772 YIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPKS 831 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVER 961 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 832 ETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEA 891 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLIS 1014 ++ L ++ + L +L +L + A S ++ V + I Sbjct: 892 VHLKDLQKEYKSQLAQLKMEHREKLGALLLNEKAPAAIIHRRSADILVQEGAVFDQETIE 951 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLRV 1073 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 952 LLERESLVDLLMAPCDMYDVLKDILSNYETAVQRLEVNYKTEAEHIKEGDADLDHGVIRQ 1011 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN+ Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNL 1071 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQ+ ETHLG+A G +K+ + + I + Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM------------------------ 1107 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 I L +S L+DG TGE FD V VGY Sbjct: 1108 -------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVGY 1137 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQE Sbjct: 1138 IYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQE 1197 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1198 ILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|166154525|ref|YP_001654643.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis 434/Bu] gi|166155400|ref|YP_001653655.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|226699385|sp|B0B7N1|RPOB_CHLT2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699386|sp|B0BBU6|RPOB_CHLTB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|51538993|gb|AAU06082.1| DNA-directed RNA polymerase beta chain [Chlamydia trachomatis] gi|56544490|gb|AAV92910.1| RpoB [Chlamydia trachomatis] gi|165930513|emb|CAP04007.1| DNA-directed RNA polymerase beta chain [Chlamydia trachomatis 434/Bu] gi|165931388|emb|CAP06961.1| DNA-directed RNA polymerase beta chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 1252 Score = 1243 bits (3215), Expect = 0.0, Method: Composition-based stats. Identities = 596/1370 (43%), Positives = 822/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG ++ +I+ F Sbjct: 172 EAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEE---------------FF 216 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + K L G + Sbjct: 217 SVEERSLRSEK---------------------------------------DFVALVGKVL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 238 ADNVVDADSSLVYGKAGEKLSTAMLKRILDTGVQSLKIAV--GADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T + A S LFFD+ +Y+L VGR K+N +L D+ Sbjct: 296 SYEAALKDFYRRLRPGEPATLANARSTIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDDET 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA++ LDE F + + R GE + Sbjct: 536 YRVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYNMFKTPVCWARYKGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 596 THMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA IVA+ G+VE VD+ IV+ D Y+L KF RSN TC+NQ PL Sbjct: 656 DSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DRYQLKKFLRSNSGTCINQTPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISER++ +D +TS Sbjct: 711 CSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GI+ +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLI 1013 ++ L ++ + L +L +L + A S ++ + + I Sbjct: 891 AVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIVHRRSADILVQEGAIFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 951 ELLERESLVDLLIAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 I L +S L+DG TGE FD V VG Sbjct: 1108 --------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|255348675|ref|ZP_05380682.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis 70] gi|255503215|ref|ZP_05381605.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis 70s] Length = 1252 Score = 1242 bits (3213), Expect = 0.0, Method: Composition-based stats. Identities = 596/1370 (43%), Positives = 822/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDILDLPNLVEVQIRSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG ++ +I+ F Sbjct: 172 EAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEE---------------FF 216 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + K L G + Sbjct: 217 SVEERSLRSEK---------------------------------------DFVALVGKVL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 238 ADNVVDVDSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAV--GADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T + A S LFFD+ +Y+L VGR K+N +L D+ Sbjct: 296 SYEAALKDFYRRLRPGEPATLANARSTIMRLFFDAKRYNLGCVGRYKLNKKLGFPLDDET 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA++ LDE F + + R GE + Sbjct: 536 YRVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYNMFKTPVCWARYKGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 596 THMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA IVA+ G+VE VD+ IV+ D Y+L KF RSN TC+NQ PL Sbjct: 656 DSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DRYQLKKFLRSNSGTCINQTPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISER++ +D +TS Sbjct: 711 CSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GI+ +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLI 1013 ++ L ++ + L +L +L + A S ++ + + I Sbjct: 891 AVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 951 ELLERESLVDLLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 I L +S L+DG TGE FD V VG Sbjct: 1108 --------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|163783789|ref|ZP_02178773.1| RNA polymerase beta subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159880942|gb|EDP74462.1| RNA polymerase beta subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 1470 Score = 1241 bits (3212), Expect = 0.0, Method: Composition-based stats. Identities = 602/1484 (40%), Positives = 865/1484 (58%), Gaps = 136/1484 (9%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 RKFFG+ EII+ P L+ V K+S+++F+ + AP ER N GL+ ++ FP G Sbjct: 8 RKFFGRRDEIIEPPYLLSVPKSSFENFIQLKKAPHERENIGLEYILRTSFPFVDPDGNIH 67 Query: 74 LEFVSYEFD--------------------------------PPKFDVDDCLWRDLTYAVP 101 +E++ YE K+ D+C + LTY+ P Sbjct: 68 MEYLGYEIGDWECNACGYKPESDFLAGWGVDCPKCGGKLVYKEKYTPDECRIKGLTYSAP 127 Query: 102 LKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSP 161 L++ +L V ++ ++ + +Y G++PLMT G+F+I G +R++V+QL RS Sbjct: 128 LRVMFKLKVKSKEDGKE----RETPPKKVYFGEIPLMTDWGSFIINGSERVIVNQLIRST 183 Query: 162 GIHFDH--DKGRASLSGKLLYACRIIPDQGLWMDIEFD-SKDIIHVRIDRRRKVPVTSFL 218 G+ F+ +K + + +++Y IIPD+G ++ E + D H R+DR+ K+ + L Sbjct: 184 GVFFEEKEEKQKDATITRIIYRASIIPDKGSRIEFELSGTTDTFHARVDRK-KISGIAIL 242 Query: 219 MALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESG 277 A G ++ EILS FY + + + + Sbjct: 243 RAWGFETAYEILSNFYEGVRKLTLQKGALIDTETGEEYRPEDLEHHYIFA---------- 292 Query: 278 KKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIF 337 L++ + I + E ++ E I +EA ++ ++ + Sbjct: 293 ---ILRYRAKLEDSDKEKEFIEERYIEEWEGLELLLKDER--IKVEAVTILPNENAVKSP 347 Query: 338 HSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSV------ 391 +++I + + + V + + ++IY+ +R + T + Sbjct: 348 YAKIVVDTLANETTPREPDRMSVVKVPSEFTLKDYGYMEIYKKLRLVETMTMEIENLIER 407 Query: 392 AESMFNFLFFDSDKYDL------------------------------------STVGRVK 415 A S F F +YDL VG+ K Sbjct: 408 ARSYFEVFFGHITRYDLSKVGRVKINAKVHKLPKTLKPADVDLLDKLPPVALAEDVGKYK 467 Query: 416 MNMRLNLDT-------------------PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 RL + ++ R I D+I I+K L+DLR + DDI Sbjct: 468 EGTRLTKEVLKDIFKSKKVKEVKIKDYTEEEARFILPVDLINILKYLIDLRFRRERKDDI 527 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI--SSVDIDSVMPQDLINAKPVVSAVC 514 +LGNRRVRSVGE+L+NQ R G+ +ME+ ++R+ + + ++ PQDLIN + V +++ Sbjct: 528 AHLGNRRVRSVGELLENQVRTGIAKMEKVFRDRVAVINPEDPNIRPQDLINPRYVTNSIT 587 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 EF QLSQ ++ N LS +TH RRLSALG GG+ R A E+RDVHP+HYGRICP ET Sbjct: 588 EFLKGGQLSQYLDNANPLSALTHKRRLSALGPGGLTRESAKFEIRDVHPSHYGRICPIET 647 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSL 634 EG NIGLV+S+T +A+VN YGF+ TPYRKV +G VTND+ YL+A EEE+ IAQ ++ Sbjct: 648 PEGQNIGLVTSMTVYAQVNEYGFLITPYRKVENGTVTNDIDYLAAYEEEDFVIAQ-STPT 706 Query: 635 DEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 DE G E V R + +V E++++ID SP+QV+S++ASLIPFLE+DD+NR LMG Sbjct: 707 DEKGKILTERVLARHKNDIRIVKPEQVNYIDVSPRQVISVSASLIPFLEHDDANRALMGS 766 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDP 754 NMQRQAVPL+ +AP +GTGME VA+ S + + AKR G+VE+V++ RIV+R ++DP Sbjct: 767 NMQRQAVPLIFTQAPLIGTGMEKKVARDSHSVLTAKRGGVVEEVNSARIVVRVNPEEIDP 826 Query: 755 STS---GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 + G+DIY L KFQR+NQNTCVNQRPLV+ G E++ ++IADG ST G+LALG+++ Sbjct: 827 NDPLDFGIDIYDLKKFQRTNQNTCVNQRPLVEKGQEIKAGEVIADGQSTFRGELALGKDV 886 Query: 812 LVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE 871 LVAFMPW GYNFED+++ISER+V EDVFTSIHIEE EV AR+TKLG EEI+R IP V E+ Sbjct: 887 LVAFMPWRGYNFEDAIVISERLVKEDVFTSIHIEELEVEARETKLGEEEISRQIPGVPEK 946 Query: 872 GLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRV 931 L ++DE GI+ VG V PGDILVGK+TPKGE+ +TPEEKLL+AIFGEK+ DV+D+SLR Sbjct: 947 ALAHLDELGIVRVGTYVKPGDILVGKVTPKGETQLTPEEKLLQAIFGEKSKDVKDSSLRC 1006 Query: 932 PSGVSGTVVDVRIFNRH-GIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEIL 990 P GV G V+DV+IF R G +N +VERE++E L + + + ++ L ++ Sbjct: 1007 PPGVEGVVIDVQIFTRRTGERRNMLVDTVEREEMEALKEELERRKNLIIDGRNKVLKGLV 1066 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFA------VQDEKVQRNVESLKVQYET 1044 G+ KK+ + + ++ S + +K+ + + + +T Sbjct: 1067 LGKKIEKDVTLRKKTYKAGTKIDEKFLSSFLNFIISKPDNFFKSKKLINQITEVVNKAKT 1126 Query: 1045 SKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRIL 1104 +L + K + + D+PPGV+ +VKV++A KR I+ GDKMAGRHGNKG++S +L Sbjct: 1127 QMQMLTKIYDEKKKSLYRKGDLPPGVITLVKVYIAQKRKIKVGDKMAGRHGNKGVISVVL 1186 Query: 1105 PCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGD 1164 P EDMPFL DGTPVD+VLNPLGVPSRMNVGQI ETHLGWA GLG+KI +I+ Sbjct: 1187 PVEDMPFLPDGTPVDVVLNPLGVPSRMNVGQILETHLGWAARGLGRKIGDMISQGLDRKK 1246 Query: 1165 ISPLRSFLEKV-----IGTGSHTEKISDYDDDSVLRVAEQW-KSGVPVSTPVFDGADEEA 1218 ++ + + E ++ DD + + + + GVP++TP F+GA+EEA Sbjct: 1247 LTKWFKEIYAIGDITGENAKFIEEFLNSLSDDEFYALVKDYAEKGVPMATPAFEGAEEEA 1306 Query: 1219 INSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLV 1278 I +L+ A L E+G+S LYDG TGEPFD VTVGY++MLKL HMV DKV+ARSTG YSLV Sbjct: 1307 IKKLLKRAGLPENGKSTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDKVHARSTGPYSLV 1366 Query: 1279 TQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDT 1338 TQQPLGG++ GGQRLGEMEVW ++A+GAAY LQEMLT+KSDD+ GR++VYE+IV G T Sbjct: 1367 TQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDIEGRSKVYEAIVKGRYT 1426 Query: 1339 FETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 + G PESF VLV+E++AL L + N ++E + K Sbjct: 1427 YSPGIPESFRVLVRELKALSLDVRCVNGENVGCDQVEMKEEEEK 1470 >gi|15618005|ref|NP_224289.1| DNA-directed RNA polymerase subunit beta [Chlamydophila pneumoniae CWL029] gi|33241416|ref|NP_876357.1| DNA-directed RNA polymerase subunit beta [Chlamydophila pneumoniae TW-183] gi|6647782|sp|Q9Z9A0|RPOB_CHLPN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|4376339|gb|AAD18234.1| RNA Polymerase Beta [Chlamydophila pneumoniae CWL029] gi|33235924|gb|AAP98014.1| DNA-directed RNA polymerase beta chain [Chlamydophila pneumoniae TW-183] Length = 1252 Score = 1241 bits (3211), Expect = 0.0, Method: Composition-based stats. Identities = 597/1369 (43%), Positives = 830/1369 (60%), Gaps = 147/1369 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I D+P+LIE+Q SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDIPDLPNLIEIQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 VLEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +PLMT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPLMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNILFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 + FD D+I++ IDR RRK+ +F+ ALG S+ Sbjct: 172 EAIFDINDLIYIHIDRKKRRRKILAITFIRALGYSSD----------------------- 208 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 +IE + L+S K+ + L G +A Sbjct: 209 ---------------------ADIIEEFFTIGESSLRSEKDFAL---------LVGRILA 238 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 ++I++ + +Y +AG+ + L+ + + I + I + N I L D Sbjct: 239 DNIIDEASSLVYGKAGEKLSTAMLKRMLDAGIASVKIAVD--ADENHPIIKMLAKDPTDS 296 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD-- 427 + AL D YR +RPG+ +T + A S LFFD +Y+L VGR K+N +L D+ Sbjct: 297 YEAALKDFYRRLRPGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFSIDDEAL 356 Query: 428 -VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 +RKED+I +K L+ L+ G K +DDID+L NRRVRSVGE+++NQ R GL RME+ Sbjct: 357 SQVTLRKEDVIGALKYLIRLKMGDEKACVDDIDHLANRRVRSVGELIQNQCRSGLARMEK 416 Query: 485 SIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ++ER++ D D++ P +++AK + S + +FF SQLSQ + N ++ +TH RRLS Sbjct: 417 IVRERMNLFDFSSDTLTPGKVVSAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKRRLS 476 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETPY Sbjct: 477 ALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPY 536 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ Y++A EE IAQA++SLDE FTE + + R AGE + Sbjct: 537 RIVRDGIVTDEIEYMTADVEEECVIAQASASLDEYNMFTEPVCWVRYAGEAFEADTSTVT 596 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQAVPLLK EAP VGTG+E AK Sbjct: 597 HMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPVVGTGLECRAAKD 656 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA +VA+ G+V+ VD ++V+ + Y L KF RSN TC+NQ+PL Sbjct: 657 SGAIVVAEEDGVVDFVDGYKVVVAAKHNPTIK-----RTYHLKKFLRSNSGTCINQQPLC 711 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD + + D+IADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISE+++ ED +TSI Sbjct: 712 AVGDVITKGDVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISEKLIREDAYTSI 771 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +IEEFE+ ARDTKLG EEITRDIPNVS+E L N+ E GII +GAEV PGDILVGKITPK Sbjct: 772 YIEEFELTARDTKLGKEEITRDIPNVSDEVLANLGEDGIIRIGAEVKPGDILVGKITPKS 831 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVER 961 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 832 ETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEA 891 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-------KSTVLSSDLIS 1014 ++ L + ++ L +L +L + A + + + + + I Sbjct: 892 VHLKDLQKGYKNQVATLKTEYREKLGALLLNEKAPAAIIHRRTAEIVVHEGLLFDQETIE 951 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLRV 1073 + + + ++ ++ L YET+ LE +K ++E I+ GD D+ GV+R Sbjct: 952 RIEQEDLVDLLMPNCEMYEVLKGLLSDYETALQRLEINYKTEVEHIREGDADLDHGVIRQ 1011 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMP+L +G V ++LNPLGVPSRMN+ Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMNL 1071 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQ+ ETHLG+A G +K+ + + I + Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMM------------------------ 1107 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 I L +S LYDG TGE FD V +GY Sbjct: 1108 -------------------------IEQGLPEDG-----KSFLYDGKTGERFDNKVVIGY 1137 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQE Sbjct: 1138 IYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQE 1197 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1198 ILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|289525354|emb|CBJ14830.1| DNA-directed RNA polymerase beta chain [Chlamydia trachomatis Sweden2] gi|296434904|gb|ADH17082.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis E/150] Length = 1252 Score = 1241 bits (3210), Expect = 0.0, Method: Composition-based stats. Identities = 596/1370 (43%), Positives = 822/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTHKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG ++ +I+ F Sbjct: 172 EAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEE---------------FF 216 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + K L G + Sbjct: 217 SVEERSLRSEK---------------------------------------DFVALVGKVL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 238 ADNVVDVDSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAV--GADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T + A S LFFD+ +Y+L VGR K+N +L D+ Sbjct: 296 SYEAALKDFYRRLRPGEPATLANARSTIMRLFFDAKRYNLGCVGRYKLNKKLGFPLDDET 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA++ LDE F + + R GE + Sbjct: 536 YRVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYNMFKTPVCWARYKGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 596 THMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA IVA+ G+VE VD+ IV+ D Y+L KF RSN TC+NQ PL Sbjct: 656 DSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DRYQLKKFLRSNSGTCINQTPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISER++ +D +TS Sbjct: 711 CSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GI+ +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLI 1013 ++ L ++ + L +L +L + A S ++ + + I Sbjct: 891 AVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 951 ELLERESLVDLLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 I L +S L+DG TGE FD V VG Sbjct: 1108 --------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|16753076|ref|NP_445236.1| DNA-directed RNA polymerase subunit beta [Chlamydophila pneumoniae AR39] gi|7189608|gb|AAF38502.1| DNA-directed RNA polymerase, beta subunit [Chlamydophila pneumoniae AR39] Length = 1262 Score = 1241 bits (3210), Expect = 0.0, Method: Composition-based stats. Identities = 597/1369 (43%), Positives = 830/1369 (60%), Gaps = 147/1369 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I D+P+LIE+Q SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 16 ERVSVKKKEDIPDLPNLIEIQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 75 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 76 VLEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 124 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +PLMT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 125 GTIPLMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNILFSFRIIPYRGSWL 181 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 + FD D+I++ IDR RRK+ +F+ ALG S+ Sbjct: 182 EAIFDINDLIYIHIDRKKRRRKILAITFIRALGYSSD----------------------- 218 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 +IE + L+S K+ + L G +A Sbjct: 219 ---------------------ADIIEEFFTIGESSLRSEKDFAL---------LVGRILA 248 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 ++I++ + +Y +AG+ + L+ + + I + I + N I L D Sbjct: 249 DNIIDEASSLVYGKAGEKLSTAMLKRMLDAGIASVKIAVD--ADENHPIIKMLAKDPTDS 306 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD-- 427 + AL D YR +RPG+ +T + A S LFFD +Y+L VGR K+N +L D+ Sbjct: 307 YEAALKDFYRRLRPGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFSIDDEAL 366 Query: 428 -VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 +RKED+I +K L+ L+ G K +DDID+L NRRVRSVGE+++NQ R GL RME+ Sbjct: 367 SQVTLRKEDVIGALKYLIRLKMGDEKACVDDIDHLANRRVRSVGELIQNQCRSGLARMEK 426 Query: 485 SIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ++ER++ D D++ P +++AK + S + +FF SQLSQ + N ++ +TH RRLS Sbjct: 427 IVRERMNLFDFSSDTLTPGKVVSAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKRRLS 486 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETPY Sbjct: 487 ALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPY 546 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ Y++A EE IAQA++SLDE FTE + + R AGE + Sbjct: 547 RIVRDGIVTDEIEYMTADVEEECVIAQASASLDEYNMFTEPVCWVRYAGEAFEADTSTVT 606 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQAVPLLK EAP VGTG+E AK Sbjct: 607 HMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPVVGTGLECRAAKD 666 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA +VA+ G+V+ VD ++V+ + Y L KF RSN TC+NQ+PL Sbjct: 667 SGAIVVAEEDGVVDFVDGYKVVVAAKHNPTIK-----RTYHLKKFLRSNSGTCINQQPLC 721 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD + + D+IADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISE+++ ED +TSI Sbjct: 722 AVGDVITKGDVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISEKLIREDAYTSI 781 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +IEEFE+ ARDTKLG EEITRDIPNVS+E L N+ E GII +GAEV PGDILVGKITPK Sbjct: 782 YIEEFELTARDTKLGKEEITRDIPNVSDEVLANLGEDGIIRIGAEVKPGDILVGKITPKS 841 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVER 961 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 842 ETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEA 901 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-------KSTVLSSDLIS 1014 ++ L + ++ L +L +L + A + + + + + I Sbjct: 902 VHLKDLQKGYKNQVATLKTEYREKLGALLLNEKAPAAIIHRRTAEIVVHEGLLFDQETIE 961 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLRV 1073 + + + ++ ++ L YET+ LE +K ++E I+ GD D+ GV+R Sbjct: 962 RIEQEDLVDLLMPNCEMYEVLKGLLSDYETALQRLEINYKTEVEHIREGDADLDHGVIRQ 1021 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMP+L +G V ++LNPLGVPSRMN+ Sbjct: 1022 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMNL 1081 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQ+ ETHLG+A G +K+ + + I + Sbjct: 1082 GQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMM------------------------ 1117 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 I L +S LYDG TGE FD V +GY Sbjct: 1118 -------------------------IEQGLPEDG-----KSFLYDGKTGERFDNKVVIGY 1147 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQE Sbjct: 1148 IYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQE 1207 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1208 ILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1256 >gi|296438624|gb|ADH20777.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis E/11023] Length = 1252 Score = 1240 bits (3209), Expect = 0.0, Method: Composition-based stats. Identities = 596/1370 (43%), Positives = 822/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTHKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG ++ +I+ F Sbjct: 172 EAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEE---------------FF 216 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + K L G + Sbjct: 217 SVEERSLRSEK---------------------------------------DFVALVGKVL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 238 ADNVVDVDSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAV--GADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T + A S LFFD+ +Y+L VGR K+N +L D+ Sbjct: 296 SYEAALKDFYRRLRPGEPATLANARSTIMRLFFDAKRYNLGCVGRYKLNKKLGFPLDDET 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA++ LDE F + + R GE + Sbjct: 536 YRVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYNMFKTPVCWARYKGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 596 THMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA IVA+ G+VE VD+ IV+ D Y+L KF RSN TC+NQ PL Sbjct: 656 DSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DRYQLKKFLRSNSGTCINQTPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISER++ +D +TS Sbjct: 711 CSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GI+ +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNA-------VSGPKGFKKSTVLSSDLI 1013 ++ L ++ + L +L +L + A S ++ + + I Sbjct: 891 AVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKALAAIIHRRSADILVQEGAIFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 951 ELLERESLVDLLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 I L +S L+DG TGE FD V VG Sbjct: 1108 --------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|301335785|ref|ZP_07224029.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis L2tet1] Length = 1252 Score = 1240 bits (3209), Expect = 0.0, Method: Composition-based stats. Identities = 595/1370 (43%), Positives = 822/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG ++ +I+ F Sbjct: 172 EAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEE---------------FF 216 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + K L G + Sbjct: 217 SVEERSLRSEK---------------------------------------DFVALVGKVL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 238 ADNVVDADSSLVYGKAGEKLSTAMLKRILDTGVQSLKIAV--GADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T + A S LFFD+ +Y+L VGR K+N +L D+ Sbjct: 296 SYEAALKDFYRRLRPGEPATLANARSTIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDDET 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +T+ RRL Sbjct: 416 KIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTNKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA++ LDE F + + R GE + Sbjct: 536 YRVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYNMFKTPVCWARYKGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 596 THMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA IVA+ G+VE VD+ IV+ D Y+L KF RSN TC+NQ PL Sbjct: 656 DSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DRYQLKKFLRSNSGTCINQTPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISER++ +D +TS Sbjct: 711 CSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GI+ +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLI 1013 ++ L ++ + L +L +L + A S ++ + + I Sbjct: 891 AVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIVHRRSADILVQEGAIFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 951 ELLERESLVDLLIAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 I L +S L+DG TGE FD V VG Sbjct: 1108 --------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|15835616|ref|NP_300140.1| DNA-directed RNA polymerase subunit beta [Chlamydophila pneumoniae J138] gi|8978454|dbj|BAA98291.1| RNA polymerase beta [Chlamydophila pneumoniae J138] Length = 1252 Score = 1240 bits (3208), Expect = 0.0, Method: Composition-based stats. Identities = 597/1369 (43%), Positives = 829/1369 (60%), Gaps = 147/1369 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I D+P+LIE+Q SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDIPDLPNLIEIQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 VLEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +PLMT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPLMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNILFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 + FD D+I++ IDR RRK+ +F+ ALG S+ Sbjct: 172 EAIFDINDLIYIHIDRKKRRRKILAITFIRALGYSSD----------------------- 208 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 +IE + L+S K+ + L G +A Sbjct: 209 ---------------------ADIIEEFFTIGESSLRSEKDFAL---------LVGRILA 238 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 ++I++ +Y +AG+ + L+ + + I + I + N I L D Sbjct: 239 DNIIDEACSLVYGKAGEKLSIAMLKRMLDAGIASVKIAVD--ADENHPIIKMLAKDPTDS 296 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD-- 427 + AL D YR +RPG+ +T + A S LFFD +Y+L VGR K+N +L D+ Sbjct: 297 YEAALKDFYRRLRPGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFSIDDEAL 356 Query: 428 -VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 +RKED+I +K L+ L+ G K +DDID+L NRRVRSVGE+++NQ R GL RME+ Sbjct: 357 SQVTLRKEDVIGALKYLIRLKMGDEKACVDDIDHLANRRVRSVGELIQNQCRSGLARMEK 416 Query: 485 SIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ++ER++ D D++ P +++AK + S + +FF SQLSQ + N ++ +TH RRLS Sbjct: 417 IVRERMNLFDFSSDTLTPGKVVSAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKRRLS 476 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETPY Sbjct: 477 ALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPY 536 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ Y++A EE IAQA++SLDE FTE + + R AGE + Sbjct: 537 RIVRDGIVTDEIEYMTADVEEECVIAQASASLDEYNMFTEPVCWVRYAGEAFEADTSTVT 596 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQAVPLLK EAP VGTG+E AK Sbjct: 597 HMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPVVGTGLECRAAKD 656 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA +VA+ G+V+ VD ++V+ + Y L KF RSN TC+NQ+PL Sbjct: 657 SGAIVVAEEDGVVDFVDGYKVVVAAKHNPTIK-----RTYHLKKFLRSNSGTCINQQPLC 711 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD + + D+IADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISE+++ ED +TSI Sbjct: 712 AVGDVITKGDVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISEKLIREDAYTSI 771 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +IEEFE+ ARDTKLG EEITRDIPNVS+E L N+ E GII +GAEV PGDILVGKITPK Sbjct: 772 YIEEFELTARDTKLGKEEITRDIPNVSDEVLANLGEDGIIRIGAEVKPGDILVGKITPKS 831 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVER 961 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 832 ETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEA 891 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-------KSTVLSSDLIS 1014 ++ L + ++ L +L +L + A + + + + + I Sbjct: 892 VHLKDLQKGYKNQVATLKTEYREKLGALLLNEKAPAAIIHRRTAEIVVHEGLLFDQETIE 951 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLRV 1073 + + + ++ ++ L YET+ LE +K ++E I+ GD D+ GV+R Sbjct: 952 RIEQEDLVDLLMPNCEMYEVLKGLLSDYETALQRLEINYKTEVEHIREGDADLDHGVIRQ 1011 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMP+L +G V ++LNPLGVPSRMN+ Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMNL 1071 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQ+ ETHLG+A G +K+ + + I + Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMM------------------------ 1107 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 I L +S LYDG TGE FD V +GY Sbjct: 1108 -------------------------IEQGLPEDG-----KSFLYDGKTGERFDNKVVIGY 1137 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQE Sbjct: 1138 IYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQE 1197 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1198 ILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|301336775|ref|ZP_07224977.1| DNA-directed RNA polymerase subunit beta [Chlamydia muridarum MopnTet14] Length = 1252 Score = 1240 bits (3208), Expect = 0.0, Method: Composition-based stats. Identities = 595/1369 (43%), Positives = 819/1369 (59%), Gaps = 147/1369 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 + FD D+I++ IDR RRK+ +F+ ALG + D Sbjct: 172 EASFDINDLIYIHIDRKKRRRKILAMTFIRALGYST-----------------DADIIEE 214 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 A + V L G +A Sbjct: 215 FFAVEEHSLRSEKDFV------------------------------------ALVGKVLA 238 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 +++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 239 DNVVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAV--GADENHPIIKMLAKDPTDS 296 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD-- 427 + AL D YR +RPG+ +T + A S LFFDS +Y+L VGR K+N +L D+ Sbjct: 297 YEAALKDFYRRLRPGEPATLANARSTIMRLFFDSKRYNLGRVGRYKLNKKLGFPLDDETL 356 Query: 428 -VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME+ Sbjct: 357 SQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARMEK 416 Query: 485 SIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +T RRLS Sbjct: 417 IVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTDKRRLS 476 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETPY Sbjct: 477 ALGPGGLNRERAGFEVRDVHSSHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPY 536 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ Y++A EE+ IAQA++ LDE F + + + R GE + Sbjct: 537 RVVRDGIVTDEIEYMTADVEEDCVIAQASAELDEYNMFKDSVCWARYKGEAFEADTSTVT 596 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 597 HMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAKD 656 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA +VA+ G+VE VD+ IV+ D Y L KF RSN TC+NQ PL Sbjct: 657 SGAIVVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DTYPLKKFLRSNSGTCINQTPLC 711 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISE+++ +D +TSI Sbjct: 712 SVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISEKLIKQDAYTSI 771 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GI+ +GAEV PGDILVGKITPK Sbjct: 772 YIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPKS 831 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVER 961 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 832 ETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEA 891 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLIS 1014 ++ L ++ + L +L +L + A S ++ V + I Sbjct: 892 VHLKDLQKEYKSQLAQLKMEHREKLGALLLNEKAPAAIIHRRSADILVQEGAVFDQETIE 951 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLRV 1073 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 952 LLERESLVDLLMAPCDMYDVLKDILSNYETAVQRLEVNYKTEAEHIKEGDADLDHGVIRQ 1011 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN+ Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNL 1071 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQ+ ETHLG+A G +K+ + + I + Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM------------------------ 1107 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 I L +S L+DG TGE FD V VGY Sbjct: 1108 -------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVGY 1137 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQE Sbjct: 1138 IYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQE 1197 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1198 ILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|296436756|gb|ADH18926.1| DNA-directed RNA polymerase subunit beta [Chlamydia trachomatis G/11222] Length = 1252 Score = 1239 bits (3206), Expect = 0.0, Method: Composition-based stats. Identities = 596/1369 (43%), Positives = 823/1369 (60%), Gaps = 147/1369 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+L+EVQ SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNVLFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 + FD D+I++ IDR RRK+ +F+ ALG ++ D Sbjct: 172 EAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTD---------------ADIIEEFF 216 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 S + + L++ V L G +A Sbjct: 217 SVEERSL------------------------------HLEKDFVA--------LVGKVLA 238 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 +++V+ ++ +Y +AG+ + L+ I + ++ + I + N I L D Sbjct: 239 DNVVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAV--GADENHPIIKMLAKDPTDS 296 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD-- 427 + AL D YR +RPG+ +T A S LFFD+ +Y+L VGR K+N +L D+ Sbjct: 297 YEAALKDFYRRLRPGEPATLVNARSTIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDDETL 356 Query: 428 -VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 +RKED+I +K L+ LR G K +IDDID+L NRRVRSVGE+++N R GL RME+ Sbjct: 357 SQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGLARMEK 416 Query: 485 SIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ++ER++ D D++ P +I+AK +VS + +FF SQLSQ + N ++ +TH RRLS Sbjct: 417 IVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRLS 476 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETPY Sbjct: 477 ALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPY 536 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ Y++A EE IAQA++ LDE F + + R GE + Sbjct: 537 RVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYDMFKTPVCWARYKGEAFEADTSTVT 596 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VS+ LIPFLE+DD+NR LMG NMQRQAVPLLK EA VGTG+E AK Sbjct: 597 HMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAKD 656 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA IVA+ G+VE VD+ IV+ D Y+L KF RSN TC+NQ PL Sbjct: 657 SGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLK-----DRYQLKKFLRSNSGTCINQTPLC 711 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD V D++ADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISER++ +D +TSI Sbjct: 712 SVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTSI 771 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E G++ +GAEV PGDILVGKITPK Sbjct: 772 YIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGVVRIGAEVKPGDILVGKITPKS 831 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVER 961 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 832 ETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEA 891 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLIS 1014 ++ L ++ + L +L +L + A S ++ + + I Sbjct: 892 VHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETIE 951 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLRV 1073 R + + ++ + YET+ LE +K + E I+ GD D+ GV+R Sbjct: 952 LLERESLVDLLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIRQ 1011 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMPFL +G V ++LNPLGVPSRMN+ Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNL 1071 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQ+ ETHLG+A G +K+ + + I + Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM------------------------ 1107 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 I L +S L+DG TGE FD V VGY Sbjct: 1108 -------------------------IEQGLPEDG-----KSYLFDGKTGERFDSKVVVGY 1137 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQE Sbjct: 1138 IYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQE 1197 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1198 ILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|298501290|ref|ZP_07011087.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae MAK 757] gi|297539981|gb|EFH76045.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae MAK 757] Length = 1121 Score = 1239 bits (3205), Expect = 0.0, Method: Composition-based stats. Identities = 600/1140 (52%), Positives = 819/1140 (71%), Gaps = 21/1140 (1%) Query: 229 LSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSL 288 + F+ K+ + + L L G + + G+ +E G+++T+ ++ L Sbjct: 1 MDIFFEKVNFEVKDQTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQL 57 Query: 289 KEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILY 348 ++ GV F+ + + + G A+D VN TGE+ I A I ++L + + + + +L+ Sbjct: 58 EKDGVNFIEVPVEYIVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLF 117 Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 + +++ ++ TL D DR AL++IYR+MRPG+ T AES+F LFF +++YDL Sbjct: 118 TNDLDHGPFMSETLRVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDL 177 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 STVGR+K N + + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVG Sbjct: 178 STVGRMKFNSSIGREDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVG 237 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 EM +NQ+R+GL+R+ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + Sbjct: 238 EMAENQFRVGLVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQ 297 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 N LS +TH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++ Sbjct: 298 NNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSA 357 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 FAR N YGF+ETPYR+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R Sbjct: 358 FARCNEYGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTAR 417 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE L PRE +D++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E Sbjct: 418 QKGESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEK 477 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTG+E VA SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ Sbjct: 478 PLVGTGIERNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYT 537 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQNTC+NQRP V G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L Sbjct: 538 RSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSIL 597 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +D FT+IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV Sbjct: 598 VSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEV 657 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R Sbjct: 658 KGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRD 717 Query: 949 GIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL 1008 G++K++R++ +E+ Q++ +D +E IL+ + +R+ +L Sbjct: 718 GVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------Y 764 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPP 1068 + + R +W + +++E++Q +E L QY+ K+ + +F+ K KI GDD+ P Sbjct: 765 TEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAP 824 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GVL++VKV++A+KR IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVP Sbjct: 825 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVP 884 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKIS 1186 SRMN+GQI E HLG A G+G KI +I K +++ LR FL+KV G IS Sbjct: 885 SRMNIGQILEVHLGLAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDIS 941 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + D+ V +A ++G+PV+TPVFDGA E +I +ML +ADL S Q L+DG TG+ F+ Sbjct: 942 ELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADLPASRQLTLFDGRTGDAFE 1001 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 RPVTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1002 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1061 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQEMLT+KSDDV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1062 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1121 >gi|297170771|gb|ADI21793.1| hypothetical protein [uncultured gamma proteobacterium HF0130_22O14] Length = 1198 Score = 1239 bits (3205), Expect = 0.0, Method: Composition-based stats. Identities = 601/1206 (49%), Positives = 843/1206 (69%), Gaps = 15/1206 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK FGK +D+PDL+ +Q SY+ FL ++ P++R N GLQA F ++ Sbjct: 1 MSFSFTEKKRIRKDFGKQKPALDVPDLLTLQVNSYEGFLQKDVDPEKRENVGLQATFNNL 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA-KS 121 FPI +FS A LEFVSY + P+F+ +C R L+Y+ PL++ +LI +D K Sbjct: 61 FPIESFSKNARLEFVSYRLEEPEFNERECQLRGLSYSAPLRVKTKLITYDKTTEKETVKE 120 Query: 122 IKDIKEQ----SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 +KDIK+ +Y G++PLMT+ GTF+I G R++VSQLHRSPG+ FDHDKG SGK Sbjct: 121 VKDIKQTGDTTDVYFGEIPLMTEHGTFIINGTDRVIVSQLHRSPGVFFDHDKG-VQTSGK 179 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIV 237 LL++ R+IP +G W+D EFD+KD I RIDRRRK+P T L AL ++I+ F+ + Sbjct: 180 LLFSARVIPYRGSWLDFEFDAKDSIFARIDRRRKIPATILLHALDFTDQDIIDIFFDEDS 239 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLG 297 Y ++ D + G + + ++ GK++ + +K + E K+L Sbjct: 240 YRLSKKAIEVKIN-TDHLKGTIAEFDIKFGR--KLIVSKGKRINALHIKQILETKKKYLE 296 Query: 298 ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 I L G ++++IV+ +TGEI A D + + +E ++DI +Y++ V+ Y Sbjct: 297 IEESDLLGKVLSQEIVDKKTGEIIANANDEVTTELIELFKEHGVKDINTIYINDVDQGPY 356 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 I N+L D + D++ AL++IYR+MRPG+ T A+++F LFF+ ++YDLS VGR+K N Sbjct: 357 ISNSLRIDPSSDKESALIEIYRMMRPGEPPTKEAADNLFTNLFFNDERYDLSEVGRMKFN 416 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 R+ +D + KEDII ++K L+++RNG T+DDID+LGNRR+R+VGEM +N +R+ Sbjct: 417 RRVGIDKDVGSSVLSKEDIINVLKTLINIRNGSDTVDDIDHLGNRRIRTVGEMAENAFRV 476 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL+R+ER+++ER+S V+ + +MP+DLIN+KPV +A+ EFF SSQLSQ + N LS I H Sbjct: 477 GLIRVERAVRERLSLVEQEELMPRDLINSKPVSAAIKEFFGSSQLSQFMDQNNPLSEIAH 536 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++S+ +ARVN YGF Sbjct: 537 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMAIYARVNEYGF 596 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 +ETPYR+V +GK TN + YLSA++E N IAQAN++LD + EL+ R E L+P Sbjct: 597 LETPYRQVSNGKATNKIKYLSAIDEGNFVIAQANTTLDSKNNLVNELISARYQNEFTLMP 656 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 + I+++D SPKQ+VSIAASLIPFLE+DD+NR LMG NMQRQAVP L A+ P VGTGME Sbjct: 657 PDSIEYMDVSPKQIVSIAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMER 716 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 VA SG IVA+R G V+ VDA R+VI + + SGVDIY L K+ RSNQNTC+N Sbjct: 717 KVATDSGVTIVARRGGTVDSVDASRVVIAVNDDEAITGESGVDIYNLTKYTRSNQNTCIN 776 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 QRPLVKVGD +++ D+IADG ST LG+LA+G+N+LVAFMPW+G+NFEDS+LISER+V ED Sbjct: 777 QRPLVKVGDSIQKGDVIADGASTSLGELAIGQNLLVAFMPWNGFNFEDSILISERVVQED 836 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 FT+IHIEE + +ARDTKLG EE+T DIPNV + L+ +DE GI +GAEV GDILVGK Sbjct: 837 RFTTIHIEELQCIARDTKLGSEEVTADIPNVGDTALRKLDESGIAYIGAEVVAGDILVGK 896 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 ITPKGES +TPEEKLLRAIFGEKA DV+DTSLRVPSG+ GTV+DVR+F+R G++K++RS Sbjct: 897 ITPKGESQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMDGTVIDVRVFSREGVEKDDRSN 956 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYP 1017 +E I+ + +D D+ I++ +I++RL ++L +NA G K K + L+ Sbjct: 957 EIEAADIDSVRKDLKDQLRIVESDIFNRLEKLLLNKNAKVGRKTVK----IDKALLESMQ 1012 Query: 1018 RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF 1077 + +W++ +Q++K+ +E+ ++ + + + + +KI+ D++PPGVL++VKVF Sbjct: 1013 QHKWFEIKLQNQKLNNELETYYKAHKELEKEFKQKLEAARKKIEAFDELPPGVLKMVKVF 1072 Query: 1078 VAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIF 1137 +A+KR +Q GDK+AGRHGNKG++SRI+P EDMP+++DGTPVDIVLNPLGVPSRMNVGQI Sbjct: 1073 LAVKRRVQPGDKVAGRHGNKGVISRIVPVEDMPYMEDGTPVDIVLNPLGVPSRMNVGQIL 1132 Query: 1138 ETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEK--ISDYDDDSVLR 1195 ETHLGWA GLG K+K ++ + + + LR+FL+KV T + +EK ++ DD VL Sbjct: 1133 ETHLGWAAKGLGNKVKIMLKEKEGAARVKALRTFLDKVYNTNNLSEKVPLNKLKDDEVLE 1192 Query: 1196 VAEQWK 1201 ++E K Sbjct: 1193 LSENLK 1198 >gi|289548398|ref|YP_003473386.1| DNA-directed RNA polymerase subunit beta [Thermocrinis albus DSM 14484] gi|289182015|gb|ADC89259.1| DNA-directed RNA polymerase, beta subunit [Thermocrinis albus DSM 14484] Length = 1469 Score = 1238 bits (3203), Expect = 0.0, Method: Composition-based stats. Identities = 614/1486 (41%), Positives = 859/1486 (57%), Gaps = 140/1486 (9%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RKFFG+ E+++ P L+ + K S++ FL AP ER +GL+ F++ FP Sbjct: 8 LRKFFGRRNELVEPPYLLFLPKESFESFLQFRKAPHERELKGLEYLFRTSFPFKDPDEKI 67 Query: 73 MLEFVSYEFDP----------------------------------PKFDVDDCLWRDLTY 98 +E++ YE KF V++C + TY Sbjct: 68 TIEYLGYEVGEWECNKCGYSASKDHSFLGGYGVACPKCGTPLVHKEKFSVEECKVKGFTY 127 Query: 99 AVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLH 158 AVPL++ +RL + + ++ +Y G++P+MT+ G+F+I G +R+VV+QL Sbjct: 128 AVPLRVMVRLRTKTKKGE----RVGEPRK--VYFGEIPMMTEWGSFIINGSERVVVNQLI 181 Query: 159 RSPGIHFDH--DKGRASLSGKLLYACRIIPDQGLWMDIEFDS-KDIIHVRIDRRRKVPVT 215 RSPG+ F+ ++ + S +++Y IIPD+G ++ E + D++ R+D ++KV T Sbjct: 182 RSPGVFFEEKEERPKESTVVRVIYRASIIPDKGSRIEFELSTTSDVLVTRVD-KKKVGST 240 Query: 216 SFLMALGMD-SEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVI 274 L A G++ S +IL FYP+ D F + + + Sbjct: 241 FVLRAFGLENSYQILKAFYPETKGFIVRDGLLFHQETGEEFSIEDLEGHHLFA------- 293 Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLE 334 L+ KG + I L L E ++ + I ++ + +S Sbjct: 294 ------IMRYRGVLEGKGTEEEFIEERYLEELSQLERLLKDDR--IKLDLVVAVPRESAL 345 Query: 335 EIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSV--- 391 + + L + + + K R AL+DIY+ +R + + Sbjct: 346 KSP-YGKVILETLIAECSPRDQGRSPMRIPSKFSLRDIALVDIYKKLRAVEPMVMELEHL 404 Query: 392 ---AESMFNFLFFDSDKYDLSTVGRVKMNMRLNL-------------------------- 422 A + F+ F D +YDLS VGRVK+N ++ Sbjct: 405 VSRARTHFSVYFGDLTRYDLSRVGRVKINAKVYKVPKVLKADDIGRLGELPPLALAESVG 464 Query: 423 ---------------------------DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDD 455 T D R + +D++ +K L++LR G+ DD Sbjct: 465 PYKEGQLVTEEILKEVFKEKAEVKVKDYTEDKARFLTAQDLVNTVKYLINLRYGREKKDD 524 Query: 456 IDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAV 513 I LGNRRVRSVGE+L+ Q R+G+ RME+ ++R + + D ++ PQDL+ + + S + Sbjct: 525 IAYLGNRRVRSVGELLEGQARVGIARMEKYFRDRCTVVNPDDPNLKPQDLLQPRYLTSTI 584 Query: 514 CEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAE 573 EF LSQ ++ N LS TH RRLSALG GG+ R A E+RDVHP+HYGRICP E Sbjct: 585 YEFLKGGALSQYLDNTNPLSATTHKRRLSALGPGGLTRESAKFEIRDVHPSHYGRICPIE 644 Query: 574 TSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSS 633 T EG NIGLV+SLT +A+VN YGFI TPYRKV +GKVT+ V YL+A EEEN IAQ + Sbjct: 645 TPEGQNIGLVTSLTVYAQVNEYGFIITPYRKVVEGKVTDQVEYLAAYEEENYVIAQY-TP 703 Query: 634 LDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMG 693 +DGS + V+ R + +V +++D++D SP+QVVS+++SLIPFLE+DD+NR LMG Sbjct: 704 YSKDGSILADRVYARYKNDIQVVRPQQVDYMDVSPRQVVSVSSSLIPFLEHDDANRALMG 763 Query: 694 CNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG--- 750 NMQRQAVPL+ AP VGTGME VA SGA ++AKR G+VE+VDA RIVIR Sbjct: 764 SNMQRQAVPLIFPRAPLVGTGMERKVAYDSGALVLAKRGGVVEEVDARRIVIRVNPDEID 823 Query: 751 DLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRN 810 DP+ G+DIY L KF R+NQNTC+NQRPLV G +V++ D+IADG ST G+LALGR+ Sbjct: 824 MNDPTDIGIDIYLLEKFARTNQNTCINQRPLVTKGQKVKKGDVIADGQSTYKGELALGRD 883 Query: 811 MLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSE 870 +LVAFMPW GYNFED+++ISER+V +DV+TSIHIEE EV AR+TKLG EEITR IP V E Sbjct: 884 VLVAFMPWRGYNFEDAIVISERLVRDDVYTSIHIEELEVEARETKLGYEEITRSIPGVPE 943 Query: 871 EGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLR 930 + L ++DE GI+ +G V PGDILVGK++PKGES +TPEEKLL+AIFGEK+ DV+DTSLR Sbjct: 944 KALAHLDEFGIVKIGTYVKPGDILVGKVSPKGESQLTPEEKLLQAIFGEKSRDVKDTSLR 1003 Query: 931 VPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEIL 990 P GV G VVDVR+F R ++ + +++ L R+++ L Sbjct: 1004 CPPGVEGIVVDVRVFARKVGERRNYLAEAVERAEREELEKELEKKKRLIIEGRDRVIQGL 1063 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV-------QDEKVQRNVESLKVQYE 1043 + KK T + ++ E SQ + + DE + + ++ + + Sbjct: 1064 VVGRKLDKDVTVKKKTYPAGTVVDERIFSQIINYVLTKPDNFFDDEDLCNKIREIRDRAK 1123 Query: 1044 TSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRI 1103 + ++ KI+ I D+P GV+ +VKV++A KR I+ GDKMAGRHGNKG++S + Sbjct: 1124 AQTEAITRIYEEKIKSIGSRTDLPQGVIALVKVYIAQKRKIKVGDKMAGRHGNKGVISVV 1183 Query: 1104 LPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANG 1163 LP EDMPFL DGTPVDIVLNPLGVPSRMNVGQI ETHLGWA LGKK+ L + Sbjct: 1184 LPVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAARELGKKVGELFRRTRDRV 1243 Query: 1164 DISPLRSFLEKVIGTGSHTE------KISDYDDDSVLRVAEQWKS-GVPVSTPVFDGADE 1216 + + V T I+ D+ + V Q++ G+P++TPVF+GA E Sbjct: 1244 AVLEFLKKIYAVGDTEDGQNVRALEDFINSLSDEELEAVVSQYEEQGIPMATPVFEGASE 1303 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 E I +LRMA L E G+++LYDG TGEPFD VTVGY++MLKL HMV DK++ARSTG YS Sbjct: 1304 EHIKELLRMAGLPEDGKTVLYDGRTGEPFDMRVTVGYMHMLKLIHMVDDKIHARSTGPYS 1363 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 LVTQQPLGG++ GGQRLGEMEVW ++A+GAAY LQEMLT+KSDD+ GR+ VYE+IV G Sbjct: 1364 LVTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDIEGRSNVYEAIVKGR 1423 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 T+ G PESF VLV+E++ALGL + EN + K+++ + Sbjct: 1424 YTYTPGIPESFRVLVRELKALGLDVKCENGGSAPCDKVQKQEEDET 1469 >gi|297620829|ref|YP_003708966.1| DNA-directed RNA polymerase beta chain [Waddlia chondrophila WSU 86-1044] gi|297376130|gb|ADI37960.1| DNA-directed RNA polymerase beta chain [Waddlia chondrophila WSU 86-1044] Length = 1256 Score = 1237 bits (3200), Expect = 0.0, Method: Composition-based stats. Identities = 595/1377 (43%), Positives = 841/1377 (61%), Gaps = 149/1377 (10%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F ++ EIID+P+LIE+Q S++ FL ++ P+ER N GLQ + +FPI ++ + Sbjct: 8 RVSFKESKEIIDLPNLIEIQIKSFNQFLQIDKYPEERDNIGLQEVYNEIFPIKSYDEKTI 67 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 +EF+SY PK+ D+C+ R ++Y V LK+ RL + TG IKE+ +YMG Sbjct: 68 IEFLSYSLGVPKYPPDECIRRGISYNVTLKVKFRLT-----DETG------IKEEEVYMG 116 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P+MT GTF+I G +R+VVSQLHRSPGI F+ ++ G +LY+ RIIP +G W++ Sbjct: 117 TIPIMTDKGTFIINGAERVVVSQLHRSPGICFEQER---HPRGNILYSFRIIPYRGSWLE 173 Query: 194 IEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPL 249 FD+ D+IH+ IDR RRK+ T+F+ +LG + +I+ F+ Sbjct: 174 GAFDTNDMIHIYIDRKKRRRKILATTFIRSLGYSTNADIIEEFFST-------------- 219 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 +K EK + L G +A Sbjct: 220 ---------------------------------RKMKIKSEKD-------FEKLVGKILA 239 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 ED+++ E+G I+ +AG+ + L+ + S+I + I + + + I L D Sbjct: 240 EDVLDEESGLIFGKAGEKLTTAMLKRMADSDISMVRI--AEDADETSPIIKMLAKDPTDS 297 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 + AL D YR +RPG+ +T S A S LFFD +Y+L VGR K+N +L + D+V Sbjct: 298 YETALKDFYRKIRPGEPATLSNARSAMMRLFFDPKRYNLGRVGRYKLNSKLGCEVNDEVL 357 Query: 430 ---HIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 + K+D+I +K L+ LR+G IDDID+LGNRRVRSVGE+++NQ R+GL RME+ Sbjct: 358 EVVTLSKDDVINAVKYLIRLRSGDENAYIDDIDHLGNRRVRSVGELIQNQCRIGLARMEK 417 Query: 485 SIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 I+ER++ D D++ P +++AK + + +FF SQLSQ + N ++ +TH RRLS Sbjct: 418 IIRERMNLFDFTSDTLTPGKIVSAKGLSGVLKDFFGRSQLSQFMDQTNPVAELTHKRRLS 477 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 +LG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETPY Sbjct: 478 SLGPGGLNRDRAGFEVRDVHTSHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPY 537 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT ++ Y++A +EEN IAQA+ SLDE F +E+ + R GE + + ++ Sbjct: 538 RIVRDGVVTEEIEYMTADQEENCVIAQASVSLDEFNMFEDEICWARYRGEPLEIESSRVT 597 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQ VPLL EAP VGTG+E+ A+ Sbjct: 598 HMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQGVPLLAPEAPIVGTGLEARAARD 657 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA ++A+ G V+ +D +IVI + ++ Y L KF RSN +C+NQ+PL Sbjct: 658 SGAVVIAEEDGTVQYIDGNKIVIAPKKNPMEK-----KTYLLKKFMRSNSGSCINQKPLC 712 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVG++++ D+IADGP+TD G++ALGRN+LVAFMPW GYN+ED+++ISE+++ ED +TSI Sbjct: 713 KVGEKIKSGDVIADGPATDNGEIALGRNVLVAFMPWMGYNYEDAIIISEKLLREDAYTSI 772 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 ++EEFE+ ARDTKLG EEITRDIPNVSE+ L N+ + GII +GAEV PGDILVGKITPK Sbjct: 773 YVEEFELTARDTKLGKEEITRDIPNVSEDALINLGDDGIIRIGAEVKPGDILVGKITPKS 832 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVER 961 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K + + E Sbjct: 833 ETELAPEERLLRAIFGEKAADVKDASLVVPPGTEGVVMDVKVFSRRDRLSKTDEELVEEA 892 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-------KSTVLSSDLIS 1014 +++ L R+ ++ L + RL +L A K + +L+ D+I Sbjct: 893 SRLKDLQREYKQKRSELKMERHERLGALLLNDKAPGTIVHRKTAEIVLEEGVLLTQDVIE 952 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLRV 1073 + + + +V + ++ + Y+ LE FK ++E ++ GD D+ GV+R Sbjct: 953 TFEDYNVDDLIMPENQVYQTLKQVLHDYDVKLQTLETHFKTQLEHLKKGDTDLEAGVIRQ 1012 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA KR +Q GDKMAGRHGNKG+VS I+P DMPFL+ G V+++LNPLGVPSRMN+ Sbjct: 1013 VKVYVASKRKLQVGDKMAGRHGNKGVVSNIVPEADMPFLESGQTVEMILNPLGVPSRMNM 1072 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQ+FETHLG+A G KIK+ + + +I + + Sbjct: 1073 GQLFETHLGFAAKLKGIKIKTPVFEGFPEEEIWKMMKEQGLPENGKFFLQ---------- 1122 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 G++ G FD V VGY Sbjct: 1123 -------------------------------------DGRT-------GNRFDNTVVVGY 1138 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL+H+V+DK++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW +AYGAA++LQE Sbjct: 1139 IYMLKLSHLVADKIHARAVGPYSLVTQQPLGGKAQMGGQRFGEMEVWAAEAYGAAHLLQE 1198 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 +LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ L L + E+ Sbjct: 1199 LLTVKSDDVTGRTRIYESIVKGENVLRSGTPESFNVLIKEMQGLCLDVRTESVEESE 1255 >gi|29840449|ref|NP_829555.1| DNA-directed RNA polymerase subunit beta [Chlamydophila caviae GPIC] gi|41017695|sp|Q822J1|RPOB_CHLCV RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|29834798|gb|AAP05433.1| DNA-directed RNA polymerase, beta subunit [Chlamydophila caviae GPIC] Length = 1252 Score = 1233 bits (3191), Expect = 0.0, Method: Composition-based stats. Identities = 593/1370 (43%), Positives = 835/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+LIE+Q SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDILDLPNLIEIQIKSYKQFLQIGKLAEERDNVGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R++VSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVIVSQVHRSPGINFEQEK---HSKGNILFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG S+ +I+ Sbjct: 172 EAIFDINDLIYIHIDRKKRRRKILAMTFIRALGYSSDADIIEE----------------- 214 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++E+ +K L G + Sbjct: 215 ------------------------------------FFQIEERSLKSEK-DFTLLVGKIL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++++ + +Y +AG+ + L+ + ++I + I + N I L D Sbjct: 238 ADNVLDESSSLVYGKAGEKLSTAMLKRMLDADISTLKIAV--EADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T + A S LFFDS +Y+L VGR K+N +L ++ Sbjct: 296 SYEAALKDFYRRLRPGEPATLANARSTIMRLFFDSKRYNLGRVGRYKLNRKLGFPMDEET 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ L+ G + +IDDID+L NRRVRSVGE+++NQ R GL RME Sbjct: 356 LSQVTLRKEDVIGALKYLIRLKMGDERASIDDIDHLANRRVRSVGELIQNQCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + ++ER++ D D+++P +I+AK + S + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIVRERMNLFDFSSDTLIPGKIISAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA+++LDE F + + + RC GE + Sbjct: 536 YRIVRDGVVTDEIEYMTADVEEECVIAQASAALDEYNMFVDPVCWARCRGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQAVPLLK EAP VGTG+E+ AK Sbjct: 596 THMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPIVGTGLEARAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA +VA+ G+V+ VD ++VI Y L KF RSN TC+NQRPL Sbjct: 656 DSGAIVVAEEDGVVDYVDGYKVVIAPKHNPTLK-----RTYDLKKFLRSNSGTCINQRPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD + + D+IADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISE+++ +D +TS Sbjct: 711 CSVGDVIVKGDVIADGPATDQGELALGKNILVAFMPWYGYNFEDAIIISEKLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GII +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIIRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG-------FKKSTVLSSDLI 1013 ++ L + ++ +L +L +L + A + ++ TV + I Sbjct: 891 AVHLKDLQKGYKNQVSVLKTEYREKLGALLLNEKAPASIIHRRTADILVQEGTVFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 + + ++ ++ L YETS LE +K ++E I+ GD D+ GV+R Sbjct: 951 ELLEQESLVDLLMPPCEMYDVLKGLLSDYETSLQRLEVNYKTEVEHIREGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMP+L +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIHVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 + G+P DG G+ TGE FD V +G Sbjct: 1108 -------IEQGLPA-----DGKS------------YLYDGK-------TGERFDNTVVIG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + ++GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVSGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLDVR 1246 >gi|193214890|ref|YP_001996089.1| DNA-directed RNA polymerase subunit beta [Chloroherpeton thalassium ATCC 35110] gi|193088367|gb|ACF13642.1| DNA-directed RNA polymerase, beta subunit [Chloroherpeton thalassium ATCC 35110] Length = 1295 Score = 1232 bits (3188), Expect = 0.0, Method: Composition-based stats. Identities = 579/1410 (41%), Positives = 818/1410 (58%), Gaps = 174/1410 (12%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F K P++I+ PDL++VQ +SY FL ++ D+R ++GL+ +S FPIT G Sbjct: 2 QRVSFAKIPKVIEPPDLLKVQLSSYRSFLQDDLPSDQRNDQGLERVLRSTFPITDTRGLF 61 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY D PK+ V++C+ R LTY V LK L+L D E K Q +Y+ Sbjct: 62 LLEYISYSIDKPKYTVEECIERGLTYDVSLKTRLKLSYKDEPEEVDWKET---IVQDVYL 118 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT+ GTF+I G +R++V+QLHRSPG+ F +GK +Y+ +I+P +G W+ Sbjct: 119 GKIPYMTERGTFIINGAERVIVAQLHRSPGVVFSE---ATHPNGKKMYSAKIVPLRGSWI 175 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGM-DSEEILSTFYPKIVYSQRGDFWCFPLSA 251 + + D + + V ID+++K TS L A+G E+IL F P S Sbjct: 176 EFQTDINNQLFVYIDQKKKFLATSLLRAIGFPRDEDILRVFDLVETLPVD------PNSE 229 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 + ++G ++S ++D+ TGE + + + ++ + E G++ + ++ Sbjct: 230 NEHLIGRYLASDIIDMATGEVI-SARTSIGEDEVQKIIEAGIQRVKVSRTE--------- 279 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRK 371 ++ + + I TL+ DK + Sbjct: 280 -------------------------------------KETKLDKSVITTTLLKDKASTEE 302 Query: 372 DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD----- 426 +AL IY+ +R + A + FF+ KYDL VGR ++N +L + D Sbjct: 303 EALEMIYQELRANEAPDIESARGLLERTFFNLKKYDLGDVGRYRINKKLRYELADIQKFV 362 Query: 427 -------------------------------DVRHIRKEDIIAIIKILVDLRNGKGTIDD 455 DV + DII+II L+ L NGK +DD Sbjct: 363 KQMPDLDEISKGIEDRIARLVYEVDGKPLDSDVTVLTHYDIISIILYLIKLLNGKTEVDD 422 Query: 456 IDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCE 515 +D+L NRRVR+VGE L Q+ +GL RM ++ KE++++ D + + P DL+NA+ V S + Sbjct: 423 VDHLANRRVRTVGEQLSAQFLVGLARMAKNAKEKLNARDAEKITPGDLVNARTVSSVISS 482 Query: 516 FFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETS 575 FF +SQLSQ + N L+ +T+ RR+SALG GG+ R RAG E+RDVH THYGR+CP ET Sbjct: 483 FFATSQLSQFMDQTNPLAELTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETP 542 Query: 576 EGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLD 635 EG NIGL+SS FA VN GFIETPYR V +G+V ++V++LSA +EE++ N LD Sbjct: 543 EGPNIGLISSFCIFAEVNDKGFIETPYRPVKEGQVQDEVLFLSAEDEESKVTVPVNVKLD 602 Query: 636 EDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCN 695 + E V R G+ +V E++D+ID +P Q+VS AASLIPFLE+DD+NR LMG N Sbjct: 603 ANNKIALETVQARRKGDYPVVEAEEVDYIDVAPNQIVSAAASLIPFLEHDDANRALMGSN 662 Query: 696 MQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPS 755 MQRQAVPLL +++P+VGTG+E VA+ S IVA+ G+VE+V A + IR + D + Sbjct: 663 MQRQAVPLLISDSPYVGTGLEEKVARDSRTIIVAEGPGVVEKVTAHTVTIRYDKKVDDDN 722 Query: 756 TSG--------VDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLAL 807 G + Y ++KF RSNQ+TC+NQ+P+V G V++ D++ADG ST+ G+LAL Sbjct: 723 IEGSLLDTEETIKSYPMIKFSRSNQDTCINQKPIVSKGQRVKKGDVLADGSSTEHGELAL 782 Query: 808 GRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPN 867 G+N+LVAFMPW GYNFED++++SER+V +DVFTSIHI EFE RDTK G E+ TRDI N Sbjct: 783 GKNVLVAFMPWRGYNFEDAIVLSERLVYDDVFTSIHIHEFEATVRDTKRGEEQFTRDIYN 842 Query: 868 VSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDT 927 VSEE L+N+DE GII VGAEV DIL+GKITPKGE+ TPEEKLLRAIFGEK+ DV+D Sbjct: 843 VSEEALRNLDENGIIRVGAEVKEKDILIGKITPKGETDPTPEEKLLRAIFGEKSSDVKDA 902 Query: 928 SLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLM 987 SL VP G+ G V+ ++F+R ++ + ++E L + ++ L +RL Sbjct: 903 SLHVPPGMKGVVIKTKLFSR-----KKKVGVDNKVKLEKLEKFFARKENELKEKFLTRLE 957 Query: 988 EIL-----CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQD------EKVQRNVE 1036 L G +SG ++ V S + + D K+ V+ Sbjct: 958 HYLGGKESIGVKTLSGDVEIRRGNVFSKANLEPLVSIPRLEKIDADHGFVEAAKLNGTVK 1017 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 L +Y L+D + N+ K+ GD++ PG+ + KV++A KR IQ GDKMAGRHGN Sbjct: 1018 RLIQEYRMRHKSLQDEYDNERYKLNVGDELQPGIEELAKVYIAQKRKIQVGDKMAGRHGN 1077 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG+V +++P EDMPF+ DGTPVDIVLNPLGVPSRMN+GQ+FET LGWA LG K + I Sbjct: 1078 KGVVGKVVPVEDMPFMADGTPVDIVLNPLGVPSRMNIGQLFETSLGWAASKLGVKFATPI 1137 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 D ++ G+PV Sbjct: 1138 FDGATYAEVQQKLKDA------------------------------GLPV---------- 1157 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 G+ L+DG TGEPFD VTVGYIYM+KL+H+V DK++ARSTG YS Sbjct: 1158 --------------HGKIKLHDGRTGEPFDDEVTVGYIYMMKLSHLVDDKIHARSTGPYS 1203 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 L+TQQPLGGK+ GGQR GEMEVW ++AYGA+++LQE+LT+KSDDV GRTR YE+IV G Sbjct: 1204 LITQQPLGGKAQFGGQRFGEMEVWALEAYGASHILQEVLTVKSDDVSGRTRTYEAIVKGQ 1263 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENS 1366 + + PESFNVL++E+Q LGL I +++ Sbjct: 1264 NLPDPNVPESFNVLIRELQGLGLEIRIDDK 1293 >gi|91228701|ref|ZP_01262614.1| DNA-directed RNA polymerase beta subunit [Vibrio alginolyticus 12G01] gi|91187727|gb|EAS74046.1| DNA-directed RNA polymerase beta subunit [Vibrio alginolyticus 12G01] Length = 1118 Score = 1231 bits (3185), Expect = 0.0, Method: Composition-based stats. Identities = 593/1135 (52%), Positives = 812/1135 (71%), Gaps = 21/1135 (1%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 ++ + + L D + G S + G+ +E G+++T+ ++ L++ GV Sbjct: 3 EVNFEVKDQTLLMELVP-DRLRGETASFDIE--ANGKVYVEQGRRVTARHIRQLEKDGVD 59 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 + + + + G ++D +N TGEI + A I ++L + + + + +L+ + +++ Sbjct: 60 HIEVPVEYIVGKVASKDYINEATGEIIVNANQEISLEALANLSQAGHKALEVLFTNDLDH 119 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 ++ TL D DR AL++IYR+MRPG+ T AE++F LFF ++YDLSTVGR+ Sbjct: 120 GPFMSETLRIDSTVDRISALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRM 179 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 K N + + + + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ Sbjct: 180 KFNSSIGREDAQEQGTLDETDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 239 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL+R+ER++KER+S D+D++MPQDLINAKP+ +AV EFF SSQLSQ + N LS Sbjct: 240 FRVGLVRVERAVKERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 299 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N Sbjct: 300 VTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNE 359 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 YGF+ETPYR+V DG VT++V YLSA+EE IAQAN+ L+EDG+F +EL+ R GE Sbjct: 360 YGFLETPYRRVVDGVVTDEVDYLSAIEEGQFVIAQANAKLNEDGTFADELITARQKGESG 419 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 L PRE ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG Sbjct: 420 LHPREHAQYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTG 479 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 +E VA SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNT Sbjct: 480 IERNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNT 539 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQRP V G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V Sbjct: 540 CINQRPCVMPGEPVSRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVV 599 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 ED FT+IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDIL Sbjct: 600 QEDRFTTIHIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDIL 659 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++ Sbjct: 660 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDK 719 Query: 955 RSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 R++ +E+ Q++ +D +E IL+ + +R+ +L S + Sbjct: 720 RALEIEQMQLKEAKKDLTEEFQILEGGLLNRVKAVLIEGG-------------YSEAKLD 766 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 R +W + ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++V Sbjct: 767 TTDRKKWLELTLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIV 826 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 KV++A+KR IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+G Sbjct: 827 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIG 886 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDS 1192 QI E HLG A G+G KI ++ K +++ R FL+KV G I+ DD Sbjct: 887 QILEVHLGLAAKGIGDKINQMV---KEQQELAKFREFLQKVYDLGDTRQKVDIASLSDDE 943 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 V + + + G+P++TPVFDGA EE+I ++L +ADL SGQ L+DG TG+ F+RPVTVG Sbjct: 944 VRTLIKNLRGGLPIATPVFDGAPEESIKALLELADLPTSGQLTLFDGRTGDAFERPVTVG 1003 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQ Sbjct: 1004 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1063 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 EMLT+KSDDV GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 1064 EMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 1118 >gi|288818171|ref|YP_003432519.1| DNA-directed RNA polymerase beta subunit [Hydrogenobacter thermophilus TK-6] gi|288787571|dbj|BAI69318.1| DNA-directed RNA polymerase beta subunit [Hydrogenobacter thermophilus TK-6] gi|308751772|gb|ADO45255.1| DNA-directed RNA polymerase, beta subunit [Hydrogenobacter thermophilus TK-6] Length = 1469 Score = 1231 bits (3185), Expect = 0.0, Method: Composition-based stats. Identities = 615/1483 (41%), Positives = 875/1483 (59%), Gaps = 139/1483 (9%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 RKFFG+ EI++ P L+ + K S++ FL +P ER ++GL+ FK+ FP Sbjct: 9 RKFFGRRSEILEPPHLLFLPKESFESFLQFKKSPHERESKGLEYIFKTSFPFKDPDEKIT 68 Query: 74 LEFVSYEFDP----------------------------------PKFDVDDCLWRDLTYA 99 +E++ YE K+ V++C + TYA Sbjct: 69 VEYLGYEVGEWECNRCGYKAYNDQSFLGGYGVKCPKCGTLLTYKEKYTVEECKTKGFTYA 128 Query: 100 VPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHR 159 VPL++ +RL V K K ++ + +Y G++P+MT+ G+FVI G +RIVVSQL R Sbjct: 129 VPLRVLVRLKVK------TKKGEKALEPKKVYFGEIPMMTETGSFVINGSERIVVSQLIR 182 Query: 160 SPGIHFDH--DKGRASLSGKLLYACRIIPDQGLWMDIEFDSK-DIIHVRIDRRRKVPVTS 216 SPG+ F+ ++ + + +++Y IIPD+G ++ E S DI+ R+D ++K+ + Sbjct: 183 SPGVFFEEKEERQKDTTIVRIIYRASIIPDKGSRIEFELSSTTDILTARVD-KKKISGSY 241 Query: 217 FLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIE 275 A G+++ +IL FYP+ F + +S++ + Sbjct: 242 IFRAFGLETAYDILKYFYPETRAFFSEGGRLFDKQTGEEYRVEDLSNNYLFA-------- 293 Query: 276 SGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEE 335 L+ KG + + + + ++ E I ++ + S + Sbjct: 294 -----ILRYKGKLEGKGKEEEFLEERYIEDAEDLKRLLKDER--IRLDLLTAVPRDSAVK 346 Query: 336 IFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSV---- 391 + +I ++ S + ++ + R AL+DIY+ +R + + Sbjct: 347 SPYGKIIIETLIAETSPRDPDKRSPIIIPARFTFRDIALVDIYKKLRAVEPMVMELEHLV 406 Query: 392 --AESMFNFLFFDSDKYDLSTVGRVKMN-------------------------------- 417 A S F+ F D +YDLS VGRVK+N Sbjct: 407 SRARSHFSLYFEDITRYDLSRVGRVKINAKIHRPPKVLKPADVERLSVLPPLALAEKVSG 466 Query: 418 ---------------------MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDI 456 +R+ T R + D++ +K L+DLR G+ DDI Sbjct: 467 YIEGELITEQMLKEVFKTKDQVRVRDYTEGAARFVLPVDLVNTVKYLIDLRFGREKKDDI 526 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDS--VMPQDLINAKPVVSAVC 514 LGNRRVRS+GE+L+NQ R+G+ RME+ ++R + + + + PQDL+N + + SA+ Sbjct: 527 AYLGNRRVRSIGELLENQARIGVARMEKFFRDRCTVANPEDPHLKPQDLLNPRYLTSALY 586 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 EF LSQ ++ N LS +TH RRLSALG GG+ R A E+RDVHP+HYGRICP ET Sbjct: 587 EFLKGGLLSQYLDNTNPLSALTHKRRLSALGPGGLTRESAKFEIRDVHPSHYGRICPIET 646 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSL 634 EG NIGLV+SLT +A++N +GFI TPYRKV DGKVT+++ YL+A EEEN IAQ + Sbjct: 647 PEGQNIGLVTSLTVYAQINEFGFIITPYRKVIDGKVTDEIEYLAAYEEENYVIAQY-TPT 705 Query: 635 DEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 DE+G + V R + +V ++++++D SP+QVVS++ASLIPFLE+DD+NR LMG Sbjct: 706 DEEGKINADRVLARYKNDIQIVKPQQVNYMDVSPRQVVSVSASLIPFLEHDDANRALMGS 765 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDP 754 NMQRQAVPL+ +P VGTGME VA S A IVAKR GIVE+VD+ RI++R ++DP Sbjct: 766 NMQRQAVPLVFTSSPLVGTGMEKKVAYDSAAVIVAKRGGIVEEVDSKRIIVRVNPEEIDP 825 Query: 755 STS---GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 + G+DIY L K QR+NQNTC+N+RPLV G +V + D++ADG ST +G+LALG+++ Sbjct: 826 NDPTDIGIDIYELKKMQRTNQNTCINERPLVFKGQKVSKGDVLADGQSTQMGELALGKDV 885 Query: 812 LVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEE 871 LVAFMPW GYNFED+++ISER+V +DVFTSIHIEE EV AR+TK+G EEITR +P + E Sbjct: 886 LVAFMPWRGYNFEDAIVISERLVKDDVFTSIHIEELEVEARETKIGYEEITRSVPGIPER 945 Query: 872 GLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRV 931 L ++DE GI+ +G V PGDILVGK+TPKGE +TPEEKLL+AIFGEK+ DV+DTSLR Sbjct: 946 MLAHLDEFGIVRIGTYVKPGDILVGKVTPKGEQQLTPEEKLLQAIFGEKSRDVKDTSLRC 1005 Query: 932 PSGVSGTVVDVRIFNRH-GIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEIL 990 P GV G VVDV++F R G +N + VER++ E L + + + +L + +++ Sbjct: 1006 PPGVEGVVVDVQVFARKVGERRNYLTEHVERQEREALRNELEKRKKLLVEGRNRIIRDLV 1065 Query: 991 CGQNAVSGPKGFKK----STVLSSDLISEYPRSQWWQFA--VQDEKVQRNVESLKVQYET 1044 G+ KK TV+ + +D+ + + ++ + + Sbjct: 1066 LGKKTDKDITVKKKTYKAGTVIDEKTFEVLLNYIVAKPENLFEDKDLCNRINEIRDRTKA 1125 Query: 1045 SKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRIL 1104 +LE +K K E I ++PPGV+ +VKV++A KR I+ GDKMAGRHGNKG++S +L Sbjct: 1126 QVELLERIYKEKEESIGKRSELPPGVVTLVKVYIAQKRKIKVGDKMAGRHGNKGVISVVL 1185 Query: 1105 PCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGD 1164 P EDMPFL DGTPVDIVLNPLGVPSRMNVGQI ETHLGWA LGKK+ LI + + Sbjct: 1186 PVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWALKELGKKLGELIEHMASRQE 1245 Query: 1165 ISPLRSFL------EKVIGTGSHTEKISDYDDDSVLRVAEQW-KSGVPVSTPVFDGADEE 1217 I + + T ++ D+ ++V E + + G+PV+T VF+GA+EE Sbjct: 1246 IVEFLKKVYSVGDTKDGENTKYIESFLNSLSDEDFIKVVESYAEKGIPVATSVFEGANEE 1305 Query: 1218 AINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSL 1277 I +L+MA L E G+ LYDG TGEPFD VTVGY+YMLKL HMV DK++ARSTG YSL Sbjct: 1306 HIKELLKMAGLPEDGRITLYDGRTGEPFDTKVTVGYMYMLKLIHMVDDKIHARSTGPYSL 1365 Query: 1278 VTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGND 1337 VTQQPLGG++ GGQRLGEMEVW ++A+GAAY LQEMLT+KSDD+ GRT+VYE+IV G Sbjct: 1366 VTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDIEGRTKVYEAIVKGKY 1425 Query: 1338 TFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 T+ G PESF VLV+E++ALGL++ EN +K ++E + Sbjct: 1426 TYTPGIPESFRVLVRELKALGLNVKCENGESKPCDQIEIEEEE 1468 >gi|89898127|ref|YP_515237.1| DNA-directed RNA polymerase subunit beta [Chlamydophila felis Fe/C-56] gi|123483622|sp|Q255E6|RPOB_CHLFF RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|89331499|dbj|BAE81092.1| DNA-directed RNA polymerase beta chain [Chlamydophila felis Fe/C-56] Length = 1252 Score = 1229 bits (3180), Expect = 0.0, Method: Composition-based stats. Identities = 592/1369 (43%), Positives = 830/1369 (60%), Gaps = 147/1369 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+LIE+Q SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDILDLPNLIEIQIKSYKQFLQIGKLAEERDNVGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNILFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPL 249 + FD D+I++ IDR RRK+ +F+ ALG S+ +F+ Sbjct: 172 EAIFDINDLIYIHIDRKKRRRKILAMTFIRALGYSSD-----------ADIIEEFFQIEE 220 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 + V L G +A Sbjct: 221 CSLKSEKDFSV------------------------------------------LVGKILA 238 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 +++++ + +Y +AG+ + L+ + ++I + I + N I L D Sbjct: 239 DNVLDEASSLVYGKAGEKLSTAMLKRMLDADISTLKI--ALEADENHPIIKMLAKDPTDS 296 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD-- 427 + AL D YR +RPG+ +T + A S LFFD +Y+L VGR K+N +L ++ Sbjct: 297 YEAALKDFYRRLRPGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFPMDEESL 356 Query: 428 -VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 +RKED+I +K L+ L+ G K +IDDID+L NRRVRSVGE+++NQ R GL RME+ Sbjct: 357 SQVTLRKEDVIGALKYLIRLKMGDEKASIDDIDHLANRRVRSVGELIQNQCRSGLARMEK 416 Query: 485 SIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ++ER++ D D+++P +I+AK + S + +FF SQLSQ + N ++ +TH RRLS Sbjct: 417 IVRERMNLFDFSSDTLIPGKIISAKGLTSVLKDFFGRSQLSQFMDQTNPVAELTHKRRLS 476 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETPY Sbjct: 477 ALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPY 536 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ Y++A EE IAQA+++LDE FT+ + + R GE + Sbjct: 537 RIVRDGVVTDEIEYMTADVEEECVIAQASANLDEYNMFTDPVCWARYRGEAFEADTSTVT 596 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQAVPLLK EAP VGTG+E+ AK Sbjct: 597 HMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPIVGTGLEARAAKD 656 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA +VA+ G+VE VD ++V+ + Y KF RSN TC+NQRPL Sbjct: 657 SGAIVVAEEDGVVEYVDGYKVVVAAKHNPTLK-----RTYEFKKFLRSNSGTCINQRPLC 711 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD V + D+IADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISE+++ +D +TSI Sbjct: 712 SVGDIVVKGDVIADGPATDQGELALGKNILVAFMPWYGYNFEDAVIISEKLIKQDAYTSI 771 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GII +GAEV PGDILVGKITPK Sbjct: 772 YIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIIRIGAEVKPGDILVGKITPKS 831 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVER 961 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 832 ETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEA 891 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG-------FKKSTVLSSDLIS 1014 ++ L + ++ +L +L +L + A + ++ TV + I Sbjct: 892 VHLKDLQKGYKNQISVLKTEYREKLGALLLNEKAPASIIHRRTADILVQEGTVFDQETIE 951 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLRV 1073 + + + +++L YETS LE +K ++E I+ GD D+ GV+R Sbjct: 952 LLEQESLVDLLMPPCDMYDVLKNLLSDYETSLQRLEVNYKTEVEHIREGDADLDHGVIRQ 1011 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMP+L +G + ++LNPLGVPSRMN+ Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLANGETIQMILNPLGVPSRMNL 1071 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQ+ ETHLG+A G +K+ + + I + Sbjct: 1072 GQVLETHLGYAAKTAGIHVKTPVFEGFPESRIWDMM------------------------ 1107 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 + G+P DG G+ TGE FD V +GY Sbjct: 1108 ------IEQGLPA-----DGKS------------YLYDGK-------TGERFDNTVVIGY 1137 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQE Sbjct: 1138 IYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQE 1197 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +LT+KSDDV GRTR+YESIV G + ++GTPESFNVL+KEMQ LGL + Sbjct: 1198 ILTVKSDDVSGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLDVR 1246 >gi|330444699|ref|YP_004377685.1| DNA-directed RNA polymerase subunit beta [Chlamydophila pecorum E58] gi|328807809|gb|AEB41982.1| DNA-directed RNA polymerase, beta subunit [Chlamydophila pecorum E58] Length = 1252 Score = 1228 bits (3178), Expect = 0.0, Method: Composition-based stats. Identities = 592/1369 (43%), Positives = 829/1369 (60%), Gaps = 149/1369 (10%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R + +++D+P+LIEVQ SY FL + +ER N GL+ F+ +FPI +++ A + Sbjct: 7 RVSVKQKEDVLDLPNLIEVQIKSYKQFLQIGKLAEERENVGLEEVFREIFPIKSYNEATI 66 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LE++SY PK+ ++C+ R +TY+V LK+ RL + TG IKE+ +YMG Sbjct: 67 LEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYMG 115 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W++ Sbjct: 116 TIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGSILFSFRIIPYRGSWLE 172 Query: 194 IEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPL 249 FD D+I++ IDR RRK+ +F+ ALG S+ +I+ F+ Sbjct: 173 AIFDVNDLIYIHIDRKKRRRKILAMTFIRALGYSSDADIIEEFFQIE------------- 219 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 + + K L G +A Sbjct: 220 --ENSLRSEK---------------------------------------DFTLLVGKVLA 238 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 +++++ + +Y +AG+ + L+ + + I + I + N I L D Sbjct: 239 DNVIDETSSLVYGKAGEKLSTAMLKRMLDAGIASLKIAV--GADENHPIIKMLAKDPTDS 296 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD-- 427 + AL D YR +RPG+ +T + A S LFFD +Y+L VGR K+N +L D+ Sbjct: 297 YESALKDFYRRLRPGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNCKLGFPIDDETL 356 Query: 428 -VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 +RKED+I +K L+ L+ G K T+DDID+L NRRVRSVGE+++NQ R GL RME+ Sbjct: 357 SQVTLRKEDVIGALKYLIRLKMGDEKATVDDIDHLANRRVRSVGELIQNQCRAGLARMEK 416 Query: 485 SIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ++ER++ D D++ P +++AK + S + +FF SQLSQ + N ++ +TH RRLS Sbjct: 417 IVRERMNLFDFSSDTLTPGKVVSAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKRRLS 476 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL+SSL++FA++N +GFIETPY Sbjct: 477 ALGPGGLNRERAGFEVRDVHSSHYGRICPIETPEGPNIGLISSLSAFAKINEFGFIETPY 536 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V DG VT+++ Y++A EE IAQA++SLDE FTE L + R GE + Sbjct: 537 RIVRDGVVTDEIEYMAANVEEECVIAQASASLDEFNMFTEPLCWARYRGEAFEADTSTVT 596 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQAVPLLK E P VGTG+E+ AK Sbjct: 597 HMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTETPIVGTGLEARAAKD 656 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SGA +V + G+VE VD ++V+ + Y L KF RSN TC+NQRPL Sbjct: 657 SGAIVVVEEDGVVEYVDGYKVVVAAKYNPTIK-----RTYHLKKFLRSNSGTCINQRPLC 711 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 VGD V + D+IADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISE+++ D +TSI Sbjct: 712 SVGDVVTKGDVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISEKLIKNDAYTSI 771 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GII +GAEV PGDILVGKITPK Sbjct: 772 YIEEFELTARDTKLGKEEITRDIPNVSEEILANLGEDGIIRIGAEVKPGDILVGKITPKS 831 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVER 961 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 832 ETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELIEEA 891 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK-------KSTVLSSDLIS 1014 ++ L ++ ++ L ++ +L + A + + + T+ ++I Sbjct: 892 VHLKDLQKNYKNQVAALKTEYREKIGALLFNEKAPAAIIHRRTADVLVHEGTIFDQEIIE 951 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLRV 1073 + + ++ ++ + YET+ LE +K +IE I+ GD D+ GV+R Sbjct: 952 ILEKEALVDLLMPPCEIYDVLKGMLSDYETALQSLEVNYKTEIEHIREGDADLDHGVIRQ 1011 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMP+L +G V ++LNPLGVPSRMN+ Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMNL 1071 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQ+ ETHLG+A G +K+ + + I + Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMM------------------------ 1107 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 + G+P DG G+ TGE FD V +GY Sbjct: 1108 ------IEQGLPA-----DGKS------------FLYDGK-------TGERFDNRVVIGY 1137 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQE Sbjct: 1138 IYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHLLQE 1197 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +LT+KSDDV GRTR+YESIV G + +GTPESFNVL+KEMQ LGL + Sbjct: 1198 ILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVR 1246 >gi|213582505|ref|ZP_03364331.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 1116 Score = 1224 bits (3166), Expect = 0.0, Method: Composition-based stats. Identities = 583/1134 (51%), Positives = 797/1134 (70%), Gaps = 18/1134 (1%) Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 +FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G + Sbjct: 1 MFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--T 58 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 59 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 118 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 119 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIR 178 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD 301 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 179 DNKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVE 235 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 + G V++D V+ TGE+ A + L ++ S + I L+ + +++ YI T Sbjct: 236 YIAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 295 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 + D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 296 VRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 355 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R Sbjct: 356 RDEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 415 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+ Sbjct: 416 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETP Sbjct: 476 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++ Sbjct: 536 YRRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 596 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P Sbjct: 656 DSGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 715 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+ Sbjct: 716 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 775 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 776 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 835 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 GE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Sbjct: 836 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 895 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 Q++ +D +E IL+ ++SR+ +L ++ + + PR +W Sbjct: 896 MQLKQAKKDLSEELQILEAGLFSRIRAVLVSGGV-------------EAEKLDKLPRDRW 942 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 + + DE+ Q +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+K Sbjct: 943 LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1002 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHL Sbjct: 1003 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1062 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 G A G+G KI +++ + + + +S + DD VLR Sbjct: 1063 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLR 1116 >gi|329943036|ref|ZP_08291810.1| DNA-directed RNA polymerase, beta subunit [Chlamydophila psittaci Cal10] gi|313848192|emb|CBY17193.1| putative DNA-directed RNA polymerase beta chain [Chlamydophila psittaci RD1] gi|328814583|gb|EGF84573.1| DNA-directed RNA polymerase, beta subunit [Chlamydophila psittaci Cal10] Length = 1252 Score = 1220 bits (3157), Expect = 0.0, Method: Composition-based stats. Identities = 597/1370 (43%), Positives = 831/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+LIE+Q SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDILDLPNLIEIQIKSYKQFLQIGKLAEERDNIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ D+C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPDECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNILFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG S+ +I+ Sbjct: 172 EAIFDINDLIYIHIDRKKRRRKILAITFIRALGYSSDADIIEE----------------- 214 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++E +K L G + Sbjct: 215 ------------------------------------FFQIEEHSLKSEK-DFSFLVGKIL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++++ + +Y +AG+ + L+ + + I + I + N I L D Sbjct: 238 ADNVLDEASSLVYGKAGEKLSTAMLKRMLDANISTLKIAV--EADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T + A S LFFD +Y+L VGR K+N +L ++ Sbjct: 296 SYEAALKDFYRRLRPGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFPMDEES 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ L+ G K +IDDID+L NRRVRSVGE+++NQ R GL RME Sbjct: 356 LAQVTLRKEDVIGALKYLIRLKMGDEKASIDDIDHLANRRVRSVGELIQNQCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + I+ER++ D D+++P +I+AK + S + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIIRERMNLFDFSSDTLIPGKIISAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V G VT+++ Y++A EE IAQA+++LDE F + + + R GE + Sbjct: 536 YRIVRGGVVTDEIEYMTADVEEECVIAQASANLDEYNMFVDPVCWARYRGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQAVPLLK EAP VGTG+E+ AK Sbjct: 596 THMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPIVGTGLEARAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA +VA+ G+VE VD ++VI + Y L KF RSN TC+NQRPL Sbjct: 656 DSGAIVVAEEDGVVEYVDGYKVVIAAKHNPTLK-----RTYDLKKFLRSNSGTCINQRPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V + D+IADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISE+++ +D +TS Sbjct: 711 CSVGDVVVKGDVIADGPATDKGELALGKNILVAFMPWYGYNFEDAIIISEKLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GII +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIIRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG-------FKKSTVLSSDLI 1013 ++ L + ++ +L +L +L + A + ++ TV + I Sbjct: 891 AVHLKDLQKGYKNQISVLKTEYREKLGALLLNEKAPASIIHRRTADILVQEGTVFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 + + + ++SL YETS LE +K ++E I+ GD D+ GV+R Sbjct: 951 ELLEQESLVDLLMPPCDMYDVLKSLLSDYETSLQRLEVNYKTEVEHIREGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMP+L +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIHVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 + G+P DG G+ TGE FD V +G Sbjct: 1108 -------IEQGLPA-----DGKS------------YLYDGK-------TGERFDNTVVIG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + ++GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVTGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLDVR 1246 >gi|62185274|ref|YP_220059.1| DNA-directed RNA polymerase subunit beta [Chlamydophila abortus S26/3] gi|81312570|sp|Q5L5I3|RPOB_CHLAB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|62148341|emb|CAH64108.1| putative DNA-directed RNA polymerase beta chain [Chlamydophila abortus S26/3] Length = 1252 Score = 1220 bits (3156), Expect = 0.0, Method: Composition-based stats. Identities = 598/1370 (43%), Positives = 832/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+LIE+Q SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDILDLPNLIEIQIKSYKQFLQIGKLAEERDNIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ D+C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPDECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNILFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG S+ +I+ Sbjct: 172 EAIFDINDLIYIHIDRKKRRRKILAITFIRALGYSSDADIIEE----------------- 214 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++E +K L G + Sbjct: 215 ------------------------------------FFQIEEHSLKSEK-DFSFLVGKIL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++++ + +Y +AG+ + L+ + + I + I + N I L D Sbjct: 238 ADNVLDEASSLVYGKAGEKLSTAMLKRMLDANISTLKIAV--EADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T + A S LFFD +Y+L VGR K+N +L ++ Sbjct: 296 SYEAALKDFYRRLRPGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFPMDEES 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ L+ G K +IDDID+L NRRVRSVGE+++NQ R GL RME Sbjct: 356 LAQVTLRKEDVIGALKYLIRLKMGDEKASIDDIDHLANRRVRSVGELIQNQCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + I+ER++ D D+++P +I+AK + S + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIIRERMNLFDFSSDTLIPGKIISAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V DG VT+++ Y++A EE IAQA+++LDE F + + + R GE + Sbjct: 536 YRIVRDGVVTDEIEYMTADVEEECVIAQASANLDEYNMFVDPVCWARYRGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQAVPLLK EAP VGTG+E+ AK Sbjct: 596 THMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPIVGTGLEARAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA +VA+ G+VE VD ++VI + Y L KF RSN TC+NQRPL Sbjct: 656 DSGAIVVAEEDGVVEYVDGYKVVIAAKHHPTLK-----RTYDLKKFLRSNSGTCINQRPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V + D+IADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISE+++ +D +TS Sbjct: 711 CSVGDVVVKGDVIADGPATDKGELALGKNILVAFMPWYGYNFEDAIIISEKLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GII +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIIRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG-------FKKSTVLSSDLI 1013 ++ L + ++ +L +L +L + A + ++ TV + I Sbjct: 891 AVHLKDLQKGYKNQISVLKIEYREKLGALLLNEKAPASIIHRRTADILVQEGTVFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 + + + ++SL YETS LE +K ++E I+ GD D+ GV+R Sbjct: 951 ELLEQESLVDLLMPPCDMYDVLKSLLSDYETSLQRLEVNYKTEVEHIREGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMP+L +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIHVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 + G+P DG G+ TGE FD V +G Sbjct: 1108 -------IEQGLPA-----DGKS------------YLYDGK-------TGERFDNTVVIG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + ++GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVTGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLDVR 1246 >gi|195952636|ref|YP_002120926.1| DNA-directed RNA polymerase subunit beta [Hydrogenobaculum sp. Y04AAS1] gi|195932248|gb|ACG56948.1| DNA-directed RNA polymerase, beta subunit [Hydrogenobaculum sp. Y04AAS1] Length = 1470 Score = 1220 bits (3156), Expect = 0.0, Method: Composition-based stats. Identities = 574/1481 (38%), Positives = 857/1481 (57%), Gaps = 138/1481 (9%) Query: 10 LGRV-RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF 68 + RKFFG+ E++D+P L++V S+++F+ N+ P +R +GL+ ++ FP Sbjct: 5 KHAIPRKFFGRRSELLDLPFLVKVPTESFENFIQFNVPPTKRKEQGLEYILRTSFPFQDT 64 Query: 69 SGAAMLEFVSYEFD--------------------------------PPKFDVDDCLWRDL 96 + +E++ YE K+ ++C + + Sbjct: 65 NKNITVEYIGYEIGNWECNKCGYKPETDFLAGADTECPKCKTILSYKEKYTPEECKEKGI 124 Query: 97 TYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQ 156 TY+ P++I LRL K IY G++P+MT GTFVI G +R+VV+Q Sbjct: 125 TYSAPIRIMLRLRKKTKSGEFVDTPKK------IYFGEMPMMTPIGTFVINGSERVVVNQ 178 Query: 157 LHRSPGIHF--DHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSK-DIIHVRIDRRRKVP 213 L RSPGI + D+ + + ++ I PD+G ++ E + DII RID++R + Sbjct: 179 LIRSPGIFYSDKEDRQKEGTVSRTIFTASIHPDKGSRIEFELSTNSDIISARIDKKR-IS 237 Query: 214 VTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ 272 S L A G+++ +ILS FY + D + ++ + S + Sbjct: 238 AISILRAFGLETAYDILSQFYEDVKAFNVKDGLIIDKNTGEVYKPEDLESHYLFA----- 292 Query: 273 VIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKS 332 ++ + I + L V ++ E + IE + + Sbjct: 293 --------VLRYTAKIEGTEKEEEFIEERYIEDLNVLNRLIKDER--VKIELLTAVQSEK 342 Query: 333 LEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGD------V 386 + F+ +I ++ + + R L DIY +R + Sbjct: 343 TTKSFYGKIILETLINDTKAKDQHGKSLVRTNSQFTLRDIGLRDIYVKLRSMEGLVQEMA 402 Query: 387 STFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD-------------------- 426 + + F F D ++DLS VGRVK+N ++ + + Sbjct: 403 DIIQRSRAYFEAYFQDIARFDLSKVGRVKINAKIYIHKRELTEKDLEIFDELPVLELAKD 462 Query: 427 ---------------------------------DVRHIRKEDIIAIIKILVDLRNGKGTI 453 + R + +D++ IK L+ +R GK Sbjct: 463 YDNYKEGTILTKDIFEYILKSHKTIEVRDYTGLEARFLNHKDLVNAIKYLLKVRFGKEKK 522 Query: 454 DDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMP--QDLINAKPVVS 511 DDI +LGNRRVR +GE+L+NQ R+G+ RM +S ++++++++ + QDL+N++ +VS Sbjct: 523 DDIAHLGNRRVRPIGELLENQARIGIARMLKSFRDKVATINPEDPTIKAQDLVNSRYLVS 582 Query: 512 AVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICP 571 ++ EF QLSQ ++ N LS +TH RRLSALG GG+ R A E+RDVHP+HYGR+CP Sbjct: 583 SMFEFLKGGQLSQYLDNSNPLSSLTHRRRLSALGPGGLTRESAKFEIRDVHPSHYGRLCP 642 Query: 572 AETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQAN 631 ET EG NIGLV+S+T++A+ N YGF+ TPYRKV +G VT+ + +L+A EEEN IAQ + Sbjct: 643 IETPEGQNIGLVTSMTTYAQTNEYGFLVTPYRKVENGIVTDQIEFLAAYEEENFVIAQ-S 701 Query: 632 SSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVL 691 + D+ G + + R + +V +++ID SP+Q++S++ASLIPFLE+DD+NR L Sbjct: 702 TPTDQKGKILGDRLIARYKNDIQIVKPSDVNYIDVSPRQIISVSASLIPFLEHDDANRAL 761 Query: 692 MGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGD 751 MG NMQRQAVPL+ +AP +GTGMES VA SGAAI+AKR G+VE+VD+ RIVIR + Sbjct: 762 MGSNMQRQAVPLIFTQAPLIGTGMESKVAIDSGAAILAKRGGVVEEVDSNRIVIRVNPNE 821 Query: 752 ---LDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALG 808 DP G+D+Y+L+KF ++NQNT VNQRP+V G ++++ D IADG ST +G+LALG Sbjct: 822 INEKDPLDMGIDVYKLLKFTKTNQNTSVNQRPIVYKGQKIKKGDCIADGQSTFMGELALG 881 Query: 809 RNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNV 868 +++LV FMPW GYNFED+++ISER+V EDV TS+HIEE + AR+TK+G EEITR +P V Sbjct: 882 KDLLVCFMPWRGYNFEDAIVISERLVKEDVLTSVHIEELKAEARETKIGDEEITRQVPGV 941 Query: 869 SEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTS 928 SE+ L +DE GI+ VG V PGDILVGK+TP GE+ +TPE+KLL+AIFGEK DV+D+S Sbjct: 942 SEKALAYLDEYGIVKVGTYVKPGDILVGKVTPIGETQLTPEQKLLQAIFGEKTRDVKDSS 1001 Query: 929 LRVPSGVSGTVVDVRIFNRHGID--KNERSISVEREQIELLARDKDDEQVILDRNIYSRL 986 LR P G+ G VVDV++F R + KN VE+E+ + ++K+ ++ + Sbjct: 1002 LRCPPGIEGVVVDVQVFTRKLSESKKNPLVEHVEQEEKNRIKKEKEFMLNLVIEKRNEIV 1061 Query: 987 MEILCGQNAVSGPKGFKK----STVLSSDLISEYPRSQWWQFA--VQDEKVQRNVESLKV 1040 +++ G+ K KK TV+ L + D+K+ + +E ++ Sbjct: 1062 KDLVIGKVINKPIKLAKKTYEEGTVIDEALFDNIANFVITKPENFFSDKKLIKKIEEIRD 1121 Query: 1041 QYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIV 1100 + + + +++ ++ KIE + D+P GV+ +VKV++A KR I+ GDKMAGRHGNKG++ Sbjct: 1122 KAQAQRKVIDKIYEEKIENVGKQSDLPSGVITMVKVYIAQKRKIRVGDKMAGRHGNKGVI 1181 Query: 1101 SRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK 1160 S +LP EDMPFL DGTPVD+VLNPLGVPSRMNVGQI ETHLG A +GKK++ +I++Y Sbjct: 1182 SVVLPVEDMPFLPDGTPVDVVLNPLGVPSRMNVGQILETHLGMASKYIGKKVQEMIDEYF 1241 Query: 1161 ANGDISPLRSFL-----EKVIGTGSHTEKISDYDDDSVLRVAEQW-KSGVPVSTPVFDGA 1214 +I+ + + + + D+ V ++G+P++TP F+G Sbjct: 1242 NRDEITEYIASIYAIGDKNNENKNFIKNMLKSLSDEEFKNVVSFVAQNGIPIATPAFEGC 1301 Query: 1215 DEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGS 1274 E+ + ++L+ A L E G+ +LYDG TGEPFD VT GY++MLKL HMV DK++ARSTG Sbjct: 1302 SEDDLKTLLKEAGLPEDGKFVLYDGRTGEPFDFRVTTGYMHMLKLIHMVEDKIHARSTGP 1361 Query: 1275 YSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVA 1334 YSLVTQQPLGG++ GGQRLGEMEVW ++A+GAAY LQEMLT+KSDD+ GR R YESIV Sbjct: 1362 YSLVTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDIEGRNRAYESIVK 1421 Query: 1335 GNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 G + G PESF VLV+E+++LGL++ EN K+ ++ Sbjct: 1422 GKYFYSPGIPESFKVLVRELKSLGLNVVCENGEAKSCDSVD 1462 >gi|56544492|gb|AAV92911.1| RpoB [Chlamydophila psittaci 6BC] gi|325507189|gb|ADZ18827.1| DNA-directed RNA polymerase subunit beta [Chlamydophila psittaci 6BC] gi|328914870|gb|AEB55703.1| DNA-directed RNA polymerase, beta subunit [Chlamydophila psittaci 6BC] Length = 1252 Score = 1220 bits (3156), Expect = 0.0, Method: Composition-based stats. Identities = 597/1370 (43%), Positives = 831/1370 (60%), Gaps = 149/1370 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R K +I+D+P+LIE+Q SY FL + +ER N GL+ F+ +FPI +++ A Sbjct: 6 ERVSVKKKEDILDLPNLIEIQIKSYKQFLQIGKLAEERDNIGLEEVFREIFPIKSYNEAT 65 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LE++SY PK+ D+C+ R +TY+V LK+ RL + TG IKE+ +YM Sbjct: 66 ILEYLSYNLGVPKYSPDECIRRGITYSVTLKVRFRLT-----DETG------IKEEEVYM 114 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P+MT GTF+I G +R+VVSQ+HRSPGI+F+ +K G +L++ RIIP +G W+ Sbjct: 115 GTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEK---HSKGNILFSFRIIPYRGSWL 171 Query: 193 DIEFDSKDIIHVRIDR---RRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 + FD D+I++ IDR RRK+ +F+ ALG S+ +I+ Sbjct: 172 EAIFDINDLIYIHIDRKKRRRKILAITFIRALGYSSDADIIEE----------------- 214 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 ++E +K L G + Sbjct: 215 ------------------------------------FFQIEEHSLKSEK-DFSFLVGKIL 237 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 A+++++ + +Y +AG+ + L+ + + I + I + N I L D Sbjct: 238 ADNVLDEASSLVYGKAGEKLSTAMLKRMLDANISTLKIAV--EADENHPIIKMLAKDPTD 295 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD- 427 + AL D YR +RPG+ +T + A S LFFD +Y+L VGR K+N +L ++ Sbjct: 296 SYEAALKDFYRRLRPGEPTTLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFPMDEES 355 Query: 428 --VRHIRKEDIIAIIKILVDLRNG--KGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +RKED+I +K L+ L+ G K +IDDID+L NRRVRSVGE+++NQ R GL RME Sbjct: 356 LAQVTLRKEDVIGALKYLIRLKMGDEKASIDDIDHLANRRVRSVGELIQNQCRSGLARME 415 Query: 484 RSIKERISSVD--IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + I+ER++ D D+++P +I+AK + S + +FF SQLSQ + N ++ +TH RRL Sbjct: 416 KIIRERMNLFDFSSDTLIPGKIISAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKRRL 475 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL+SFA++N +GFIETP Sbjct: 476 SALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETP 535 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR V G VT+++ Y++A EE IAQA+++LDE F + + + R GE + Sbjct: 536 YRIVRGGVVTDEIEYMTADVEEECVIAQASANLDEYNMFVDPVCWARYRGEAFEADTSTV 595 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +D SPKQ+VSI LIPFLE+DD+NR LMG NMQRQAVPLLK EAP VGTG+E+ AK Sbjct: 596 THMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPIVGTGLEARAAK 655 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SGA +VA+ G+VE VD ++VI + Y L KF RSN TC+NQRPL Sbjct: 656 DSGAIVVAEEDGVVEYVDGYKVVIAAKHNPTLK-----RTYDLKKFLRSNSGTCINQRPL 710 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 VGD V + D+IADGP+TD G+LALG+N+LVAFMPW+GYNFED+++ISE+++ +D +TS Sbjct: 711 CSVGDVVVKGDVIADGPATDKGELALGKNILVAFMPWYGYNFEDAIIISEKLIKQDAYTS 770 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 I+IEEFE+ ARDTKLG EEITRDIPNVSEE L N+ E GII +GAEV PGDILVGKITPK Sbjct: 771 IYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIIRIGAEVKPGDILVGKITPK 830 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG-IDKNERSISVE 960 E+ + PEE+LLRAIFGEKA DV+D SL VP G G V+DV++F+R + K++ + E Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG-------FKKSTVLSSDLI 1013 ++ L + ++ +L +L +L + A + ++ TV + I Sbjct: 891 AVHLKDLQKGYKNQISVLKTEYREKLGALLLNEKAPASIIHRRTADILVQEGTVFDQETI 950 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD-DMPPGVLR 1072 + + + ++SL YETS LE +K ++E I+ GD D+ GV+R Sbjct: 951 ELLEQESLVDLLMPPCDMYDVLKSLLSDYETSLQRLEVNYKTEVEHIREGDADLDHGVIR 1010 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 VKV+VA KR +Q GDKMAGRHGNKG+VS+I+P DMP+L +G V ++LNPLGVPSRMN Sbjct: 1011 QVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLANGETVQMILNPLGVPSRMN 1070 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ ETHLG+A G +K+ + + I + Sbjct: 1071 LGQVLETHLGYAAKTAGIHVKTPVFEGFPESRIWDMM----------------------- 1107 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 + G+P DG G+ TGE FD V +G Sbjct: 1108 -------IEQGLPA-----DGKS------------YLYDGK-------TGERFDNTVVIG 1136 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 YIYMLKL+H+++DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG A++LQ Sbjct: 1137 YIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQ 1196 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 E+LT+KSDDV GRTR+YESIV G + ++GTPESFNVL+KEMQ LGL + Sbjct: 1197 EILTVKSDDVTGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLDVR 1246 >gi|225849555|ref|YP_002729720.1| DNA-directed RNA polymerase subunit beta [Sulfurihydrogenibium azorense Az-Fu1] gi|225644617|gb|ACN99667.1| DNA-directed RNA polymerase, beta subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 1485 Score = 1211 bits (3134), Expect = 0.0, Method: Composition-based stats. Identities = 609/1470 (41%), Positives = 870/1470 (59%), Gaps = 109/1470 (7%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERP-NEGLQAAFKSVFPITAFSGAA 72 RK K EII PDL+ V + S+++F ++ P +R N+GL+ F++ FP +G Sbjct: 13 RKSLSKRKEIITPPDLLSVIRESFENFTQFHVNPLKRDPNKGLENLFRTSFPFVDPNGQL 72 Query: 73 MLEFVSYEFD--------------------------------PPKFDVDDCLWRDLTYAV 100 + +V YE K VD+C ++ LTY+ Sbjct: 73 EVRYVGYEIGDWECGKCGKSLPEEVLGGPEVDCPHCGSPLIYKEKLSVDECKYKGLTYSA 132 Query: 101 PLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRS 160 PL++ L L++ +VD TG K I++Q +Y G+LPL+T F+I G +R++VSQL RS Sbjct: 133 PLRVLLELVINNVDPKTGEVVPKTIRKQKLYFGELPLLTDYAYFMINGSERVIVSQLIRS 192 Query: 161 PGIHFDHDKGRA-SLSGKLLYACRIIPDQGLWMDIEFDSK-DIIHVRIDRRRKVPVTSFL 218 GI F + + + +++Y +IP++G +++++ + +I + +IDR RK+ T+ + Sbjct: 193 SGIFFSAKEDKTKDIITRIIYEGSVIPEKGSRVEVQYATNAEIFYAKIDR-RKILGTTLV 251 Query: 219 MALGMDSE-EILSTFYPK-IVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIES 276 A G D+ +IL TFY K Y + + + + + E++ + Sbjct: 252 RAFGCDTAYKILKTFYGKVEKYKVVNGELVEEKTGLPVSLEELANRDIFITYVTEEISDK 311 Query: 277 GKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA--------------------------- 309 G+ ++ K + + + VA Sbjct: 312 GQPVSIRYEKYVPAENLASYINDDRYKIEEIVAVEPQVCNKSPYQRIIVETLKKDEPKIN 371 Query: 310 --EDIVNGETGEIYIEAGDVID--------EKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + EIY + K E+F + D + V Sbjct: 372 AMFSFRDAALVEIYKKMRPTDTAVLDPKAFMKRARELFENTFEDYQKYDLSRVGRVKINA 431 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM-NM 418 K D L D + P + D+ + + + + Sbjct: 432 KVHNVPKTIKPLD-LEDFFEKFPPLMLDEDVKIRDTVYPAGTKIDRQLVEELKKHSFKEI 490 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 ++ ++ R ++ DIIAI+K L++LR GK T+DDI +LGNRRVR VGE+L+ Q R G Sbjct: 491 KVKEYLDEEARTLQMADIIAIVKYLLELRYGKKTLDDIAHLGNRRVRPVGELLEVQARAG 550 Query: 479 LLRMERSIKERISSVDIDS--VMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 + RM+++ K+R++ VDI+ + P +LIN + +V + EF QLSQ + N LS +T Sbjct: 551 IARMQKAFKDRVAIVDIEDPQLKPSELINPRYLVGTIVEFLKGGQLSQFMDQTNPLSELT 610 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG+ R A E+RDVHP+HYGR+CP ET EG NIGLVSS+T ++R+N +G Sbjct: 611 HKRRLSALGPGGLTRDSAKFEIRDVHPSHYGRVCPIETPEGQNIGLVSSMTVYSRLNEFG 670 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+ TPYRKV DG VTN++ YL+A +EE IAQAN+ +DE G FT + V R G+ LV Sbjct: 671 FLITPYRKVVDGVVTNEIEYLTAYDEEKYVIAQANAEIDEKGRFTSDRVLARAYGDIRLV 730 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 +++ ++D SPKQVVS +ASLIPFLE+DD+NR LMG NMQRQAVPL+K E P +GTGME Sbjct: 731 DPKEVHYMDISPKQVVSPSASLIPFLEHDDANRALMGSNMQRQAVPLIKTEYPLIGTGME 790 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTS---GVDIYRLMKFQRSNQN 773 ++AK SG+A+VAKR G V +VD I I+ E ++DP G+DIY L KF+ SNQ Sbjct: 791 VIIAKDSGSAVVAKRGGEVVKVDGNSITIKVNEDEIDPHDPLDIGMDIYELKKFKGSNQA 850 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 TC+NQRPLV+VGD+V + +IADG ST G+LALG+N+LVAFMPW GYNFED+++ISER+ Sbjct: 851 TCINQRPLVRVGDKVEKGAVIADGTSTYKGELALGKNVLVAFMPWRGYNFEDAIVISERL 910 Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDI 893 V +DVFTSIHIEEFEV AR+TKLGPEEITR+IPNV E L N+DE GI+ VG V PGDI Sbjct: 911 VKDDVFTSIHIEEFEVEARETKLGPEEITRNIPNVKERLLANLDEHGIVKVGTYVKPGDI 970 Query: 894 LVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKN 953 LVGK+TPKGES TPEEKLL AIFGEKA DV+DTSLRVP GV G VVDV+IF + DK Sbjct: 971 LVGKVTPKGESTPTPEEKLLLAIFGEKASDVKDTSLRVPIGVEGVVVDVQIFAKKRKDKK 1030 Query: 954 ERSI----SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 E+ ++ +++IE L + ++++ + L +L G K + V Sbjct: 1031 EKREKYFDTLIKQEIEKLNTELEEKKKFILERRDENLKALLIGSKVSKDIKVGTEVIVKE 1090 Query: 1010 SDLISEYPRSQWWQFA-------VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 + ++E + + ++D+KV + + + ++ + E ++ K E ++ Sbjct: 1091 GEKLTEENIDKVIRIIAINPSNFIKDKKVSNLAKEISDKAKSQIELWEKIYQRKKEVLEE 1150 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 G D+ PGV+ +VKV++A KR IQ GDKMAGRHGNKG++S +LP EDMPFL+DGTPVDIVL Sbjct: 1151 GADLKPGVIELVKVYIAQKRKIQVGDKMAGRHGNKGVISVVLPVEDMPFLEDGTPVDIVL 1210 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKK--------------IKSLINDYKANGDISPL 1168 NPLGVPSRMNVGQI ETHLG A LG+K I+ ++ Y + + Sbjct: 1211 NPLGVPSRMNVGQILETHLGLAAKKLGEKLSKELENIFDKEKIIQKIVEYYSIVNETNDK 1270 Query: 1169 RSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW-KSGVPVSTPVFDGADEEAINSMLRMAD 1227 ++V T + + + DD+S+ + + K G+P+ T +F+ A E+ I ML+ A Sbjct: 1271 LLTKKRVEDTKELEKALRELDDESLRSLIKDLGKIGIPIETAIFESATEDDIRRMLQAAG 1330 Query: 1228 LDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 E+G+ L DG TGEPFD VTVGY+YMLKL HMV DK++ARSTG YSL+TQQPLGG++ Sbjct: 1331 FKENGKVRLIDGRTGEPFDLEVTVGYMYMLKLIHMVDDKIHARSTGPYSLITQQPLGGRA 1390 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++A+GAAY L+EMLT+KSDD+ GR RVYE+I+ G ++ G PESF Sbjct: 1391 QFGGQRFGEMEVWALEAHGAAYTLREMLTVKSDDIEGRKRVYEAIIKGKHYYDIGVPESF 1450 Query: 1348 NVLVKEMQALGLSID-LENSRTKNSAKMEE 1376 VLV+E++ALGL+++ + + ++++ EE Sbjct: 1451 KVLVRELKALGLNVECITDGQSQSCDTSEE 1480 >gi|218960790|ref|YP_001740565.1| RNA polymerase, beta subunit [Candidatus Cloacamonas acidaminovorans] gi|167729447|emb|CAO80358.1| RNA polymerase, beta subunit [Candidatus Cloacamonas acidaminovorans] Length = 1258 Score = 1211 bits (3132), Expect = 0.0, Method: Composition-based stats. Identities = 542/1376 (39%), Positives = 815/1376 (59%), Gaps = 143/1376 (10%) Query: 15 KFFGKN---------PEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 K + + PE+ +IP+L+ +Q S++ FL +I P R +GLQA F+++FP+ Sbjct: 5 KSYSRISGRFAELGIPEV-EIPNLLAMQVDSFNDFLQKDIHPQRREKKGLQAVFENIFPL 63 Query: 66 TAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDI 125 G +LEF+ Y K+ +++C R+L+Y PLK +RL VF+ E G + KD Sbjct: 64 EDTKGNFLLEFIEYNVLQEKYSLEECRERNLSYQAPLKAKMRLSVFENRE--GVREHKDT 121 Query: 126 KEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRII 185 EQ +++G++PL+T+ GTFVI G +R+++SQL RSPG+ F +K SGK LY+ ++I Sbjct: 122 LEQEVFLGEIPLITEQGTFVINGAERVIISQLQRSPGVFFSEEK---HPSGKTLYSAKVI 178 Query: 186 PDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEIL-STFYPKIVYSQRGDF 244 P G W+D + D D++ V ID+RRK+PVT+ A+G+ + E L TFY + + Sbjct: 179 PYSGSWLDFDIDIHDVMFVHIDKRRKLPVTTLFRAIGISTNEDLRKTFYKSEKLNLK--- 235 Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLC 304 G + + + + E + + +++T L+K L E+ + + + Sbjct: 236 ---------EAKGRHLFADIYEKGNPEPIAMANEQITDSLIKFLSERKITKVEV------ 280 Query: 305 GLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVT 364 + + + NT+ Sbjct: 281 ------------------------------------------IDYNYEIARKVLENTMAK 298 Query: 365 DKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDT 424 D ++++AL IY ++RPG+ + A+ + + +FF+ +Y+L VGR K+N RL ++ Sbjct: 299 DPTTNQEEALKKIYNLIRPGEDAPLEAAKQLVDRMFFNEKRYNLGEVGRYKINSRLGINV 358 Query: 425 PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMER 484 + + ED + I K L+++ + + +DDIDNL NRRVR+VGE+L+ QY +G+ + R Sbjct: 359 DPKIMTLTVEDFVYIFKTLINIYHDEDEVDDIDNLANRRVRTVGELLQEQYTIGMAMVAR 418 Query: 485 SIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSAL 544 I+ER++ +ID V DL+N+ ++S V FF + QLSQ E N L+ + H R LSAL Sbjct: 419 IIQERMAISNIDEVTVHDLVNSNALISVVQSFFLTGQLSQFMEQTNPLAALRHKRALSAL 478 Query: 545 GQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK 604 G GG+AR RAG E+RDVH +HYGRICP ET EG NIGL+ S ++R+N +GF+ETPYRK Sbjct: 479 GPGGLARERAGFEVRDVHSSHYGRICPIETPEGPNIGLIVSPAIYSRINHFGFLETPYRK 538 Query: 605 VCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 V DG +T++ YL A +EE IAQ++ LD++ T+E++F R GE + V + ++ Sbjct: 539 VVDGCITDEYEYLDASQEEKYIIAQSDVHLDDNRRITDEMIFARDRGEFVQVSPNLVHYM 598 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D +P+Q+VS++A+LIPFLE+DD+NR LMG NMQRQAVPL+ +AP VGTGME + + + Sbjct: 599 DVAPQQMVSVSAALIPFLEHDDANRALMGSNMQRQAVPLINPQAPLVGTGMEKIASMDTS 658 Query: 725 AAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 + VA GIV +V + I ++ E D S + L KF R+NQ+TC+NQRP+V+ Sbjct: 659 SIAVAPYDGIVTKVTSAFIDLKPLNEKDEAYYLSTGNRIHLKKFVRTNQDTCINQRPIVR 718 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 VGD V++ I+DG + LALG N++VAFMPW+GYN+ED++++SE++ ED TSI+ Sbjct: 719 VGDTVKKGQPISDGACVEDNRLALGTNLMVAFMPWYGYNYEDAVILSEKVAREDTLTSIY 778 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG- 902 IEE EV+ R+ K G EE+ DIPNV + L+N+D+ GII VG+ ++ GDI+VGK+TPK Sbjct: 779 IEELEVLVRNVKNGREELAYDIPNVPAQALRNLDKTGIIRVGSVIHAGDIIVGKVTPKSV 838 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 E +PEE L+RA+FG++A D ++SL+ G+ G V+DV++F+R + + ++ Sbjct: 839 EIDPSPEENLMRALFGDRAGDFTNSSLKAKPGMEGVVIDVKVFSRLEEGSDLEEENEDK- 897 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS------GPKGFKKSTVLSSDLISEY 1016 IE L + + ++ +L +L GQ A + ++ + Sbjct: 898 -IEKLKEELALRRSKIEEFKEEKLSAVLVGQIAKNIWDEKTNIPFIAPGKKITKQDLKRI 956 Query: 1017 PRSQWWQFA--VQDEKVQRNV-ESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRV 1073 + V+D +V + + ++ + S ++ +K E+I+ GD++ GV ++ Sbjct: 957 NFKKLDLDVELVEDREVNDYIYSQIVLKIKQSLEQSDNIYKKSRERIKHGDELQYGVRKM 1016 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 VKV+VA KR I+ GDKMAGRHGNKG++S I P EDMPF++DGTPVDIVLNPLGVPSRMN+ Sbjct: 1017 VKVYVAKKRKIEVGDKMAGRHGNKGVISIIAPIEDMPFMEDGTPVDIVLNPLGVPSRMNI 1076 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQI ETHLGWA LG ++++ I D +N DI Sbjct: 1077 GQIMETHLGWAAKTLGFEVETPIFDGASNEDIVSELR----------------------- 1113 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 K+G+P E G+++LYDG +GEPF VTVG Sbjct: 1114 -------KAGLP------------------------EDGKTVLYDGKSGEPFKERVTVGI 1142 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYM+KLNH+V+DK++ARSTG YSL+TQQPLGGK+ GGQRLGEMEVW ++AYGAA VL+E Sbjct: 1143 IYMMKLNHLVADKMHARSTGPYSLITQQPLGGKAQHGGQRLGEMEVWALEAYGAASVLEE 1202 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 MLTIKSDDV GR +++I G++ G PESFNVL+ E+++LG I+ K Sbjct: 1203 MLTIKSDDVDGRNNAFKAITRGDNPPPPGVPESFNVLISELKSLGFDIEFIKEENK 1258 >gi|187251832|ref|YP_001876314.1| DNA-directed RNA polymerase subunit beta [Elusimicrobium minutum Pei191] gi|186971992|gb|ACC98977.1| DNA-directed RNA polymerase, beta subunit [Elusimicrobium minutum Pei191] Length = 1270 Score = 1206 bits (3119), Expect = 0.0, Method: Composition-based stats. Identities = 578/1395 (41%), Positives = 806/1395 (57%), Gaps = 177/1395 (12%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 FG+ + +PDL+++QK S+ FL +++AP +R +GLQAAF+ VFPI A G+ LE Sbjct: 5 NFGQISSKLSLPDLLDMQKESFVDFLQLDVAPTKRELKGLQAAFEDVFPIEAPDGSMKLE 64 Query: 76 FVSYEFDPPKF-DVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 FV YE P++ RD TY+ P+K +RL V D +K+ EQ + + D Sbjct: 65 FVKYELGAPRYSTPQQAALRDGTYSAPMKAVMRLSVKKRDG-----KLKEASEQDVTLCD 119 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLS-GKLLYACRIIPDQGLWMD 193 LPLMT G FV G +R+VVSQLHRSPGI F+ D+ + + GK LY RIIP +G W++ Sbjct: 120 LPLMTDAGCFVFNGAERVVVSQLHRSPGIIFEEDEEKKQSTLGKKLYVARIIPYRGAWIE 179 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA 252 FD + + VRIDR++KV T+FL A G+++ +I+ FY + + Sbjct: 180 FSFDIMNALWVRIDRKKKVLATTFLRACGLETNAQIIQAFYDVEDVEVK-------PAEI 232 Query: 253 DLMVGAKVSSSLVDIDTGEQV----IESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 D +VG + +VD TGE + ++ + + K + E+ +K + I + G Sbjct: 233 DNVVGRYAADDIVDPATGEVLWNLDDKAAMPMDDKIFKEMVERKIKKVKI----ISGNPR 288 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +D T E D+ + Sbjct: 289 QDDPGILATLE------------------------------------------NRKDQIR 306 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDS-DKYDLSTVGRVKMNMRL------- 420 K+A DIY+ MR D AE+ + L FD+ +YDLS VGR K+N + Sbjct: 307 TSKEAQADIYKKMRGQDFVVKEQAEAFLDNLIFDNIRRYDLSYVGRYKINKKFASLFDIV 366 Query: 421 -------NLDTPDDVRHIRKEDIIAIIKILVDLRNGKG-----------TIDDIDNLGNR 462 D R + EDII +K L+ L G+ DDID+LGNR Sbjct: 367 ENLKFKKFTKPTDKRRTLSAEDIIVTVKYLLALNAGEDAQKMYGEEIIFKTDDIDHLGNR 426 Query: 463 RVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQL 522 RVR +GE+L+NQ R+GL +M ++ ++R++ ++ S P+ L+NA+PV + + +FF +SQL Sbjct: 427 RVRGIGELLENQIRVGLSQMAKTARDRMNK-ELASHTPRALVNAQPVQAIIKKFFGTSQL 485 Query: 523 SQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGL 582 SQ + +N LS +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL Sbjct: 486 SQFMDQINPLSELTHKRRLSALGPGGLNRKRAGFEVRDVHHTHYGRVCPIETPEGPNIGL 545 Query: 583 VSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE 642 ++SL +++VN YG IETPYRKV GKVT++ YL+A +E++ +AQ+N+ L + G Sbjct: 546 ITSLACYSKVNKYGLIETPYRKVNSGKVTDNFEYLTADQEDDLMVAQSNTPLTDSGKINT 605 Query: 643 ELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP 702 ++V CR + +V ++D++D SP QV+S++A+LIPFLE+DD+NR LMGCNMQRQ VP Sbjct: 606 DMVSCRVRSDYPIVSPSEVDYMDVSPLQVISVSAALIPFLEHDDANRALMGCNMQRQGVP 665 Query: 703 LLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 LL EAP VGTG+E VA+ SGA I A + G V A +I + +EG +IY Sbjct: 666 LLLTEAPLVGTGIEHEVARDSGATISAAKPGRVVFAAADKIAVEPLEG------GAPEIY 719 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 L+K++RSNQ+TC+NQRPLVK GD V++ ++ADGP+ G LALG+N+LV FM W GYN Sbjct: 720 DLIKYKRSNQDTCINQRPLVKAGDIVKKGTVLADGPAMKDGFLALGKNLLVGFMSWEGYN 779 Query: 823 FEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGII 882 +ED++L+S ++V EDVFTS+H+ EF + AR+TKLG EEITRDIPN+ E L ++D GI+ Sbjct: 780 YEDAILVSHKLVKEDVFTSVHLHEFSIDARNTKLGAEEITRDIPNIGAEALAHLDADGIV 839 Query: 883 CVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDV 942 V PGDILVGK+TPKGE +TPEE+LL+ IFG+KA DV D SLRVP G SG V+ Sbjct: 840 IPSTVVEPGDILVGKVTPKGEQQLTPEERLLKVIFGKKADDVVDASLRVPPGTSGKVIGT 899 Query: 943 RIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 R+F R K + + + E+ +I+ L +K L L I S K Sbjct: 900 RVFVR----KEKLTKAEEKARIKALEDEKTTNLETLKEQRKLALTNI-----KDSNVKDA 950 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 KK E + Y+ + + + F+ ++E + Sbjct: 951 KKEE-----------------------------ERINALYKKLEKRVLEDFEREMEFSKQ 981 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++ V + VKVF+A KR + GDK++GRHGNKG+V++ILP EDMPFL DGTP+DIVL Sbjct: 982 GDELAVTVNKSVKVFIASKRKLMVGDKLSGRHGNKGVVAKILPEEDMPFLPDGTPLDIVL 1041 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182 +PLG+PSRMNVGQ+FET LGWA LG + + D + +K + Sbjct: 1042 SPLGIPSRMNVGQLFETMLGWAAKNLGYNAATPVFDGPTEETVREEIKKAKKAL------ 1095 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242 + GVP D+ + LYDG TG Sbjct: 1096 -----------------IEKGVP------------------EKHLPDDYCRITLYDGRTG 1120 Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302 +PF+ VT+GY+Y++KL H+V DKV+ARSTG YSL+T+QPLGGK+ GGQR GEMEVW I Sbjct: 1121 QPFEEKVTIGYMYIMKLIHLVEDKVHARSTGPYSLITRQPLGGKAQFGGQRFGEMEVWAI 1180 Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 + YGA Y LQE LT+KSDD GRT++YESIV G + G PESF VLVKE+QALGLS++ Sbjct: 1181 EGYGATYTLQEFLTVKSDDFTGRTKMYESIVRGEAPQQPGVPESFKVLVKELQALGLSVE 1240 Query: 1363 LENSRTKNSAKMEEI 1377 L + + + Sbjct: 1241 LLKDNQGQAVEEMTV 1255 >gi|323182085|gb|EFZ67495.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli 1357] Length = 1028 Score = 1202 bits (3110), Expect = 0.0, Method: Composition-based stats. Identities = 584/1041 (56%), Positives = 770/1041 (73%), Gaps = 13/1041 (1%) Query: 326 DVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGD 385 + L ++ S + I L+ + +++ YI TL D DR AL++IYR+MRPG+ Sbjct: 1 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 60 Query: 386 VSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVD 445 T AES+F LFF D+YDLS VGR+K N L + + + K+DII ++K L+D Sbjct: 61 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 120 Query: 446 LRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLIN 505 +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ER++KER+S D+D++MPQD+IN Sbjct: 121 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 180 Query: 506 AKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTH 565 AKP+ +AV EFF SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTH Sbjct: 181 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 240 Query: 566 YGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENR 625 YGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPYRKV DG VT+++ YLSA+EE N Sbjct: 241 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 300 Query: 626 YIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLEND 685 IAQANS+LDE+G F E+LV CR GE L R+++D++D S +QVVS+ ASLIPFLE+D Sbjct: 301 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 360 Query: 686 DSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVI 745 D+NR LMG NMQRQAVP L+A+ P VGTGME VA SG VAKR G+V+ VDA RIVI Sbjct: 361 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 420 Query: 746 RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDL 805 + E ++ P +G+DIY L K+ RSNQNTC+NQ P V +G+ V R D++ADGPSTDLG+L Sbjct: 421 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 480 Query: 806 ALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDI 865 ALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+IHI+E ++RDTKLGPEEIT DI Sbjct: 481 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 540 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 PNV E L +DE GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+ Sbjct: 541 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 600 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSR 985 D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Q++ +D +E IL+ ++SR Sbjct: 601 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 660 Query: 986 LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 + +L ++ + + PR +W + + DE+ Q +E L QY+ Sbjct: 661 IRAVLVAGGV-------------EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDEL 707 Query: 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILP 1105 K E + + K KI GDD+ PGVL++VKV++A+KR IQ GDKMAGRHGNKG++S+I P Sbjct: 708 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 767 Query: 1106 CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI 1165 EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG A G+G KI +++ + + Sbjct: 768 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 827 Query: 1166 SPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225 + +S + D+ V+R+AE + G+P++TPVFDGA E I +L++ Sbjct: 828 REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 887 Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 DL SGQ LYDG TGE F+RPVTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGG Sbjct: 888 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 947 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV GN E G PE Sbjct: 948 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE 1007 Query: 1346 SFNVLVKEMQALGLSIDLENS 1366 SFNVL+KE+++LG++I+LE+ Sbjct: 1008 SFNVLLKEIRSLGINIELEDE 1028 >gi|189485077|ref|YP_001956018.1| DNA-directed RNA polymerase beta chain [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287036|dbj|BAG13557.1| DNA-directed RNA polymerase beta chain [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 1257 Score = 1201 bits (3107), Expect = 0.0, Method: Composition-based stats. Identities = 569/1393 (40%), Positives = 818/1393 (58%), Gaps = 178/1393 (12%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 FG+ ID P L+++QK S+ FL N+AP++R +GL++AF+ +FP+T G +L Sbjct: 4 VNFGRIRIPIDPPSLLKMQKDSFSEFLQQNVAPEKRKLQGLESAFRDIFPLTNSDGNLVL 63 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 E+VSY F PK+ V++ + RD TYA+PLK+ LRLI D+ K++ EQ +Y GD Sbjct: 64 EYVSYAFGEPKYSVEESITRDATYALPLKVKLRLIYKKEDDIE-----KELSEQEVYFGD 118 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLS-GKLLYACRIIPDQGLWMD 193 +PLMT TF+I G +R+VVSQ+HRSPG+ F+ D+ + GK LY R+IP +G W++ Sbjct: 119 IPLMTDTATFIINGAERVVVSQIHRSPGVIFEEDEEKRVTVLGKPLYFARMIPYRGAWVE 178 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGM-DSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 EFD I++VRIDR+RK+ VT+FL +LG EEIL+ F S A Sbjct: 179 FEFDQNGILYVRIDRKRKIFVTTFLRSLGFRTDEEILNLFKEVKEVSLDA--------AL 230 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 + G ++ + D +TGE + ++G++L L+K L KG + + D L + +D Sbjct: 231 TSLTGEYIAEDISDENTGEIIADTGRELQEDLIKKLWAKGFTKVTVFKDVSILLTLKKDT 290 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 + + YI L T + ++ Sbjct: 291 I-----------------------------------KNQKEAINYIYKVLKTQEFVVQER 315 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL---------- 422 A + + ++ F +YDL+ +GR K+ +L Sbjct: 316 AQVFLEELL------------------FKSVRRYDLTKIGRYKILKKLAPIFKYYEKNFN 357 Query: 423 --DTPDDVRHIRKEDIIAIIKILVDLRNG-----------KGTIDDIDNLGNRRVRSVGE 469 P+ R + KED++ +K L+ L +G K +DDID+LGNRRVRSVGE Sbjct: 358 LNIPPETKRTLTKEDVVVTLKYLLMLYSGETEFTENGQTTKIVLDDIDHLGNRRVRSVGE 417 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +L+NQ R+GL++M R++KE +++ D +V P+ LIN ++ + +FF +SQLSQ + + Sbjct: 418 LLENQIRIGLVQMARTVKEHMNNQDKFNVTPRSLINITQFIAQIRKFFGTSQLSQFMDQI 477 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N L+ +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++F Sbjct: 478 NPLAELTHKRRLSALGPGGLNRKRAGFEVRDVHHTHYGRVCPIETPEGPNIGLITSLSAF 537 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 A VN YG IETPY+KV +G+ T+ + YL+A +E+ ++AQAN+ LD+ G+ +LV R Sbjct: 538 ASVNPYGLIETPYKKVKNGRATDKIEYLTADKEDEFFVAQANTPLDDKGNILSDLVQGRK 597 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 + + K+D++D SP QV+SI+A+LIPFLE+DD+NR LMGCNMQRQAVPLL AE P Sbjct: 598 WDDFLFQSPAKVDYMDVSPMQVISISAALIPFLEHDDANRALMGCNMQRQAVPLLLAEVP 657 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 V TG+E VA+ SG +V+ G V V + I+I + +++Y L K+ R Sbjct: 658 LVSTGIEKKVAEDSGVVVVSDSDGEVVSVSSDEIMIY-------SQSKKIEVYELKKYLR 710 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 SNQ+TC+NQ+PL+ +GD V++ IIADGP+T G L+LG+N+LVA+MPW GYNFED+ML+ Sbjct: 711 SNQDTCINQKPLITLGDIVKKGQIIADGPATSDGQLSLGQNILVAYMPWDGYNFEDAMLL 770 Query: 830 SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 SE+++ +D FTSIHI EF+ AR+TK PEEIT+DIPNV E L ++DE GI+ VG+ V Sbjct: 771 SEKLIQDDKFTSIHIREFKTEARETKEHPEEITKDIPNVGAEDLLDLDEYGIVKVGSMVQ 830 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 GDILVGK PKGE MTPEE+LLR +FG+KA DV+D SLRVP G+SG V+ VR+F R Sbjct: 831 RGDILVGKTAPKGEQQMTPEERLLRVLFGKKAEDVQDVSLRVPPGISGKVIGVRVFIRLE 890 Query: 950 IDKNERSI-------SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 ++ SV L +DK ++ I ++ +++ I Sbjct: 891 KITDQEKKKKQKEMYSVYEAAKAKLCKDKKEQLEIAKKSETAKIEAI------------- 937 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 Y T + IL ++++ EK++ Sbjct: 938 ---------------------------------------YATKEEILRQNYESEKEKLKK 958 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GDD+P V + VKV++A K +Q GDK+AGRHGNKG+V+RILP EDMP L DGTPVD VL Sbjct: 959 GDDLPVSVNKTVKVYIAAKLKVQVGDKLAGRHGNKGVVARILPVEDMPHLPDGTPVDCVL 1018 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182 +PL +PSRMNVGQ+ E LGW+ LG ++ + + D + I + I Sbjct: 1019 SPLAIPSRMNVGQLLEIMLGWSGKELGVQMITPVFDGASEEQIKDYVEKAKAKILDKKKK 1078 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242 I+ + L EE+++ + + LYDG TG Sbjct: 1079 LLIAHGLEGVEL---------------------EESLSKFADESLPTSDCKIKLYDGRTG 1117 Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302 EPF VT+G +Y++KLNH+V DK++ARSTG YSL+T+QPLGGK+ GGQR GEMEVW I Sbjct: 1118 EPFMEKVTIGVMYVMKLNHLVEDKMHARSTGPYSLITRQPLGGKAQFGGQRFGEMEVWAI 1177 Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 + YGAA++LQE LT+KSDDV GR ++Y+SI+ G + G PESF VLV E+++L L+++ Sbjct: 1178 EGYGAAHILQEFLTVKSDDVEGRVKMYDSIIKGESISKPGVPESFKVLVSELKSLALNVE 1237 Query: 1363 LENSRTKNSAKME 1375 L N + + + Sbjct: 1238 LFNGKRQKDNHEK 1250 >gi|320101660|ref|YP_004177251.1| DNA-directed RNA polymerase subunit beta [Isosphaera pallida ATCC 43644] gi|319748942|gb|ADV60702.1| DNA-directed RNA polymerase subunit beta [Isosphaera pallida ATCC 43644] Length = 1236 Score = 1199 bits (3103), Expect = 0.0, Method: Composition-based stats. Identities = 553/1357 (40%), Positives = 785/1357 (57%), Gaps = 141/1357 (10%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF-SGAAM 73 KFFG+ + IPDL ++Q SY FL + P++R ++GL+A F+ +FPI ++ Sbjct: 16 KFFGRIRDDFPIPDLTQIQTESYARFLQEDTPPEQRKDQGLEAVFREIFPIESYGDKTLR 75 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133 LE++ YE P++D D+C LTY PL + LRL D + E +Y+G Sbjct: 76 LEYIKYELGKPRYDPDECRRLSLTYGRPLNVWLRLWKGD-----------ESIEDHVYLG 124 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 D+P+M G F+I G +R+VVSQLHRSPG+ F D K L+ACRIIP++G W++ Sbjct: 125 DMPIMIGGGEFIINGAERVVVSQLHRSPGVDFVVD---TESGDKKLHACRIIPERGSWIE 181 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALG--MDSEE-ILSTFYPKIVYSQRGDFWCFPLS 250 ++ + KD + VRID+ K + L A+ ++E IL Sbjct: 182 LQVNKKDALEVRIDQSGKFSAMTLLRAMDPAYSTDEAIL--------------------- 220 Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 + I T E+ + L Sbjct: 221 --------RAFYDTETIHTSEEGAAA-------------------------RLENKIACG 247 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D+V+ ETGE+ ++G ID + + I ++ + I ++L D D Sbjct: 248 DVVDPETGEVLCDSGARIDRVRAQLFVDHNLGAIEVMV---EVKDPLILHSLQMDPTSDH 304 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 + ALL IY+ +RPG+ A +F F+D+++Y L VGR ++N + NLD P+D Sbjct: 305 ESALLKIYQRLRPGNPPQLDKARDLFREKFYDTNRYRLGRVGRFRINRKFNLDLPEDKMT 364 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + D + I+ ++DLR KG IDDID+LGNRR+R++ E+ ++ R G L++ R+++ER+ Sbjct: 365 LDAADYVHAIRYIIDLRRNKGHIDDIDHLGNRRLRTIDELAADEIRKGFLKLRRTVQERM 424 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + + P+ LIN K + +A+ FF +LSQ+ + N L+++TH RRLSALG GG+ Sbjct: 425 TMKDAEDLNPRSLINQKSISAAIDYFFGRGELSQVVDQTNPLAQLTHERRLSALGPGGLN 484 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH +HYGRICP ET EG NIGL+SSL ++ARV+ YGF+ PYR V +GK Sbjct: 485 RKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLANYARVDEYGFLVCPYRVVENGKP 544 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 TN+V ++ A +E + Y+A A+ LDE G R + ++P +K+ +ID SP+Q Sbjct: 545 TNEVRWMRADDENDVYLAPADVPLDEHGRIKGPNTIARYQSDIHMIPSDKVQYIDISPRQ 604 Query: 671 VVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAK 730 VV ++A LIPFLE+DD+NR LMG NMQRQAVPLL AE P V TG+E VA +SG + A+ Sbjct: 605 VVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVAEPPLVATGLEGAVAMNSGMVVRAR 664 Query: 731 RAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRR 790 G+V +VD+ ++VI GV +Y+L K+ N+ TC+NQ+P+V VG +V++ Sbjct: 665 EDGVVTEVDSTKVVID-----------GVHVYKLRKYIGLNERTCLNQKPVVSVGQQVKK 713 Query: 791 NDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVM 850 D++ADG ST G+LALGRN+LVAFM W GYNFED++++SER+V EDV+TSIHIEEFE Sbjct: 714 GDLLADGASTYQGELALGRNVLVAFMSWDGYNFEDAIILSERLVKEDVYTSIHIEEFEAD 773 Query: 851 ARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEE 910 R+TKLG EE TRDIPNVSE+ L+++DE GI+ VG V PGDILVGK+ PK +S ++PEE Sbjct: 774 IRETKLGREEFTRDIPNVSEKALRHLDENGIVAVGTYVKPGDILVGKVAPKSKSELSPEE 833 Query: 911 KLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARD 970 KLL AIFG DV++ SL VPSGV G V+ + F+R E + ++ +I+ + Sbjct: 834 KLLHAIFGRSGEDVKNDSLEVPSGVEGIVLSTQRFSRRTSLTEEERKAHDK-EIKDTEQA 892 Query: 971 KDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEK 1030 + + R + L E++ G L E + + Sbjct: 893 ESIKIAEAYRQMIKELEEVIGGPVVHKETARPYGREKDPVALAEESQSFKLEHIDLHGPD 952 Query: 1031 VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKM 1090 + + ++ L D + K+ ++ GD++ GVL++VK++VA KR I GDKM Sbjct: 953 ILSKAREVHRRHAVRIDNLRDEKERKLNSLKLGDELQTGVLQMVKIYVATKRVISVGDKM 1012 Query: 1091 AGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGK 1150 AGRHGNKG++++ILP EDMPFL DGTPV+I+LNPLGVPSRMNVGQI ETHLGWA LG Sbjct: 1013 AGRHGNKGVIAKILPEEDMPFLADGTPVEILLNPLGVPSRMNVGQILETHLGWAAAKLGF 1072 Query: 1151 KIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPV 1210 + + D I + Sbjct: 1073 RAICPVFDGADESVIRQHLKEAGLPENGKAQL---------------------------- 1104 Query: 1211 FDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYAR 1270 G TGEPFD+ VTVGY+YMLKL+H+V DK++AR Sbjct: 1105 -------------------YDG-------RTGEPFDQKVTVGYMYMLKLHHLVDDKIHAR 1138 Query: 1271 STGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYE 1330 +TG YSL+TQQPLGGK+ GGQR GEMEVW ++AYGAAY+LQE+LT+KSDDV GRT++YE Sbjct: 1139 ATGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKIYE 1198 Query: 1331 SIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 S+V G +T E GTP SF+VL E++ L L++ LE R Sbjct: 1199 SMVKGENTLEAGTPASFDVLTNEIRGLALNMQLEKKR 1235 >gi|168700810|ref|ZP_02733087.1| DNA-directed RNA polymerase beta chain [Gemmata obscuriglobus UQM 2246] Length = 1254 Score = 1194 bits (3088), Expect = 0.0, Method: Composition-based stats. Identities = 550/1361 (40%), Positives = 790/1361 (58%), Gaps = 130/1361 (9%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 + FG+ + +++PDL +VQ SYD FL ++ + D+R GL+ + +FPI ++ L Sbjct: 15 RDFGRFGDAVEVPDLTDVQTRSYDRFLQLDASYDKRTQTGLEGVLQEIFPIESYDKRIKL 74 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 E++ YE P++D D+C LTY P ++ LRL K+ + E+ +Y+GD Sbjct: 75 EYLRYELGKPRYDPDECRQLRLTYGRPFRVWLRL----------RKTEGEPVEEEVYLGD 124 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 +P+M G F+I G +R+VVSQLHRSPG+ F + K L++CRIIP++G W++I Sbjct: 125 MPIMIGGGEFIINGAERVVVSQLHRSPGVDFV----VTREADKDLHSCRIIPERGSWIEI 180 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALG--MD-SEEILSTFY----PKIVYSQRGDFWCF 247 KD + VRID+ K + L A+ +E IL F+ ++ S G Sbjct: 181 NATKKDTLGVRIDQSGKFSAVTLLRAMDPMYSTTESILKEFFGEVIEQVNVSVAGSRLKL 240 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLY 307 + ++D +TGE +++GK TS + +K + + Sbjct: 241 VGDPEANQMPCIAVEDVIDPETGEVYLDAGKPFTSDKYDRVASSMIKTVQVM-------- 292 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 + +D IL + D Sbjct: 293 -------------------------------AYPKDPIILNAIHEDVGT------AGDSK 315 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 + ALL IY+ +RPG+ A+ +F F D ++Y L VGR ++N + N + Sbjct: 316 DSHEGALLKIYQRLRPGNPPQLEKAKELFKEKFLDPNRYRLGRVGRFRINRKFNQTVAET 375 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 +R D + +K L+DLR GKG +DDID+LGNRR+R++ E+ ++ R G L++ R+++ Sbjct: 376 EMTLRSVDFVNSVKYLLDLRAGKGHVDDIDHLGNRRLRTIDELAADELRKGFLKLRRTVQ 435 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER++ D + P+ LIN K V +A+ FF S+LSQ+ + N L+++TH RRLSALG G Sbjct: 436 ERMAIRDQQDMNPRTLINPKSVSAAIEYFFGRSELSQVVDQTNPLAQLTHERRLSALGPG 495 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVH +HYGRICP ET EG NIGL+SSL+ ++ ++ YGF+ TPY+KV + Sbjct: 496 GLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLSIYSEIDEYGFLITPYKKVSN 555 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 +T +VV L A EE N + A++ E V R +GE +L+P EK+ +ID S Sbjct: 556 KNLTEEVVRLRADEESNAVLVPADTP-FEGNKIATANVSGRQSGELMLIPAEKVQYIDVS 614 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 PKQ+V ++A LIPFLE+DD+NR LMG NMQRQAVPLL E P VGTG+E VAK SG + Sbjct: 615 PKQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLIPEPPLVGTGLEKDVAKHSGMLV 674 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+ G V VDA RI + + V Y L K+ N+ TC+NQ+P+V++G + Sbjct: 675 RAQEEGTVVFVDAERIRLEEKDKI-------VREYVLRKYHGLNERTCLNQKPIVRMGQK 727 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++ +IIADG +T G+LALGRN+LVAFM W GYNFED+++ISER+V D +TSIHIEEF Sbjct: 728 VKKGEIIADGAATKNGELALGRNVLVAFMSWEGYNFEDAIIISERLVKNDTYTSIHIEEF 787 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 ++ R+TKLG EE TRDIPNVS + L N+DE G++ +G V PGDILVGK++PK S +T Sbjct: 788 DIEIRETKLGKEEFTRDIPNVSPKALANLDEHGVVQIGTYVRPGDILVGKVSPKSRSELT 847 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLL AIFG DV++ SL V SG G V+ F+R + +++++ + + Sbjct: 848 PEEKLLHAIFGRAGEDVKNDSLEVQSGTEGIVIAAHRFSRRAHMSEDEKKQIDKDR-KDI 906 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS-QWWQFAV 1026 + R L ++L + G + ++ +++E + + + + Sbjct: 907 ESTYNRRIAEQFREFVKALEDVLDKKELKDPNTGKQLASDKDDKVVAEQAKEFKLDKLDI 966 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 + + + + ++ D + K+ + GD++P GV ++VKV+VA KR I Sbjct: 967 RSPDSLKKAQKIHHRHWERIQFFIDEQERKLNSLNRGDELPSGVQQMVKVYVATKRVISV 1026 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG++S++LP EDMPFLKDGTPVDI+LNPLGVPSRMNVGQI ETHLG+A Sbjct: 1027 GDKMAGRHGNKGVISKVLPEEDMPFLKDGTPVDILLNPLGVPSRMNVGQILETHLGYAAA 1086 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG K + + D +I Sbjct: 1087 KLGFKAVTPVFDGATEEEIR---------------------------------------- 1106 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 D E I E+G+S+LYDG TG+ FD+PVTVGYIYMLKL+H+V DK Sbjct: 1107 -----DALKEAGI---------PETGKSVLYDGRTGDAFDQPVTVGYIYMLKLHHLVDDK 1152 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 V+AR+TG YSL+TQQPLGGK+ GGQR GEMEVW ++AYGAAY+LQE+LT+KSDDV GRT Sbjct: 1153 VHARATGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRT 1212 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 ++YES+V G +T E GTP SF+VL E++ LGL++ LE R Sbjct: 1213 KIYESMVKGENTLEAGTPASFDVLTHEIRGLGLNMCLEKKR 1253 >gi|237756130|ref|ZP_04584703.1| DNA-directed RNA polymerase, beta subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237691715|gb|EEP60750.1| DNA-directed RNA polymerase, beta subunit [Sulfurihydrogenibium yellowstonense SS-5] Length = 1488 Score = 1192 bits (3084), Expect = 0.0, Method: Composition-based stats. Identities = 614/1478 (41%), Positives = 874/1478 (59%), Gaps = 109/1478 (7%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERP-NEGLQAAFKSVFPITAFSGAA 72 RK K EII PDL+ V K S+++F+ + P +R N+GL++ F++ FP +G Sbjct: 13 RKILSKRREIITPPDLLSVPKESFENFVQFHTNPLKRDPNKGLESLFRTSFPFVDPNGQL 72 Query: 73 MLEFVSYEFD--------------------------------PPKFDVDDCLWRDLTYAV 100 + ++ YE K V++C ++ LTY Sbjct: 73 EVRYIGYEIGDWECGKCGKALPDEVLGGPEVDCPNCGGPLIYKEKLTVEECKFKGLTYGA 132 Query: 101 PLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRS 160 PL++ L L++ D TG K IK+Q IY G++PL+T F+I G +RI+VSQL RS Sbjct: 133 PLRVLLELVINHTDPKTGEIIPKTIKKQKIYFGEIPLLTDYAYFMINGSERIIVSQLIRS 192 Query: 161 PGIHFDHDKGRA-SLSGKLLYACRIIPDQGLWMDIEFDSK-DIIHVRIDRRRKVPVTSFL 218 GI F + + + +++Y +IP++G +++++ + +I + +IDR RK+ T+ L Sbjct: 193 SGIFFSGKEDKTKDIITRVIYEGSVIPEKGSRVEVQYATNSEIFYAKIDR-RKILGTTLL 251 Query: 219 MALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAA-----DLMVGAKVSSSLVDIDTGE- 271 A G+D+ +IL FY K+ D + + +V + + V + E Sbjct: 252 RAFGLDTAYKILKNFYGKVDRYIVEDGKLVHENTKIPVNLEELVNRDIFVTYVYEEMSEK 311 Query: 272 -----------QVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETG-- 318 +ES +KL + ++E + + + E + E Sbjct: 312 GQPVPIKQEKYVSVESLEKLLNDDRIKIEEVVTVEPQVINKSSYQRVIVETLKKDEPKIN 371 Query: 319 -----------EIYIEAGDVID--------EKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 EIY + K +E+F++ DI + V Sbjct: 372 ALFTFRDAALVEIYRKMRPTDTAVLDPKAFMKRAKELFNNTFTDIQRYDLSRVGRVKLNA 431 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM-NM 418 K D L D + P + + D L + + Sbjct: 432 KVHNIPKTIKPLD-LEDFFEKFPPLALDEDIETKDGIIPKGTKIDPVVLEKLKETSFKEI 490 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 ++ ++ R ++ DIIAI+K L++LR GK +DDI +LGNRRVR VGE+L+ Q R G Sbjct: 491 KVKEYLDEEARTLQLADIIAIVKYLLELRFGKKNLDDIAHLGNRRVRPVGELLEAQARAG 550 Query: 479 LLRMERSIKERISSVDID--SVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 + RM+++ ++R+++VD++ ++ P +LIN + + +++ EF S QLSQ + N LS +T Sbjct: 551 IARMQKAFRDRVATVDVEDPNLKPSELINPRYLTNSILEFLKSGQLSQFMDQTNPLSELT 610 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG+ R A E+RDVHP+HYGRICP ET EG NIGLVSS+T ++R+N +G Sbjct: 611 HKRRLSALGPGGLTRESAKFEIRDVHPSHYGRICPIETPEGQNIGLVSSMTVYSRINEFG 670 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+ +PYRKV +G VTN++ YL+A EEE IAQAN+ +DE G F + V R G+ LV Sbjct: 671 FLISPYRKVINGVVTNEIEYLTAYEEEKYVIAQANAEIDEKGRFLTDRVLARAYGDIRLV 730 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 ++ ++D SPKQVVS +ASLIPFLE+DD+NR LMG NMQRQAVPL++ E P VGTGME Sbjct: 731 EPNEVHYMDVSPKQVVSPSASLIPFLEHDDANRALMGSNMQRQAVPLIRTEYPLVGTGME 790 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG---DLDPSTSGVDIYRLMKFQRSNQN 773 V+AK SG+ IVAKR G V +VD IVI+ E DP G+DIY+L KF+ SNQ Sbjct: 791 VVIAKDSGSVIVAKRGGEVIKVDGNTIVIKVNEDEINPHDPLDIGMDIYKLNKFKGSNQA 850 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 TC+NQRPLV+ GD V + IADG ST G+LALG+N+LVAFMPW GYNFED+++ISER+ Sbjct: 851 TCMNQRPLVRKGDIVEKGATIADGTSTYKGELALGKNVLVAFMPWRGYNFEDAIVISERL 910 Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDI 893 V +DVFTSIHIEEFE+ AR+TKLGPEEITR+IP ++E L N+DE G++ VGA V PGDI Sbjct: 911 VKDDVFTSIHIEEFEIEARETKLGPEEITRNIPGINERQLANLDEHGVVRVGAYVKPGDI 970 Query: 894 LVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKN 953 LVGK+TPKGE+ +TPEEKLL AIFGEKA +V+D+SLRVP GV G VVDV+IF + DK Sbjct: 971 LVGKVTPKGETALTPEEKLLFAIFGEKASEVKDSSLRVPVGVEGVVVDVQIFAKKKKDKK 1030 Query: 954 ERSI----SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 E+ ++ +++++ L + ++++ + ++L EIL G K + + Sbjct: 1031 EKREKYLDTLIKQEVDKLNLELEEKKKFILDKRDAQLREILIGVKVAKDVKVAGEVIIPE 1090 Query: 1010 SDLISEYPRSQWWQFA-------VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 + ISE SQ + ++D+K+ + VES+ + ++ + E + + E +Q Sbjct: 1091 GEYISENNVSQAIKIIAINPSNFIKDKKLLKKVESIIEKAKSQIELWEKIYDKRKEAVQE 1150 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 G D+ PGV +VKV++A KR IQ GDKMAGRHGNKG++S +LP EDMPF++DGTPVDIVL Sbjct: 1151 GADLKPGVNELVKVYIAQKRKIQVGDKMAGRHGNKGVISVVLPVEDMPFMEDGTPVDIVL 1210 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKK--------------IKSLINDYKANGDISPL 1168 NPLGVPSRMNVGQI ETHLG A LG+K I ++ Y D Sbjct: 1211 NPLGVPSRMNVGQILETHLGLAAKKLGEKLGKELEKIFDREKIIDKIVEYYSIVNDTDNK 1270 Query: 1169 RSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS-GVPVSTPVFDGADEEAINSMLRMAD 1227 ++ + E +S DD+S+ + G+PV T +F+ A EE I +L A Sbjct: 1271 ILTAQRKKDSQELREVLSKLDDESLRELVRDLTKIGIPVETAIFESASEEDIKKLLNHAG 1330 Query: 1228 LDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 + ++G+ L DG TGEPFD VTVGY+YMLKL HMV DK++ARSTG YSL+TQQPLGG++ Sbjct: 1331 IKDNGKVKLIDGRTGEPFDLEVTVGYMYMLKLIHMVDDKIHARSTGPYSLITQQPLGGRA 1390 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++A+GAAY L+EMLT+KSDD+ GR RVYE+I+ G ++ G PESF Sbjct: 1391 QFGGQRFGEMEVWALEAHGAAYTLREMLTVKSDDIEGRKRVYEAIIKGKHYYDIGVPESF 1450 Query: 1348 NVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 VLV+E++ALGL+++ + A P+ K EL Sbjct: 1451 KVLVRELKALGLNVECIV-DGQPQACDTSEPEKKKPEL 1487 >gi|325108564|ref|YP_004269632.1| DNA-directed RNA polymerase subunit beta [Planctomyces brasiliensis DSM 5305] gi|324968832|gb|ADY59610.1| DNA-directed RNA polymerase subunit beta [Planctomyces brasiliensis DSM 5305] Length = 1238 Score = 1190 bits (3078), Expect = 0.0, Method: Composition-based stats. Identities = 555/1366 (40%), Positives = 789/1366 (57%), Gaps = 154/1366 (11%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 + G ++ L +Q SY FL ++ R GL+ + +FP+ +F G L Sbjct: 15 RNTGVLQTDFEMSGLTRIQTDSYARFLQADVDTSRRKPVGLEELLREIFPVESFDGQYKL 74 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 E++ Y+ P++ +C LTY PL++ LRL + + E+ +Y+GD Sbjct: 75 EYIKYDLGKPRYSPMECRQLRLTYGRPLRLWLRL------------NKEQPIEEEVYLGD 122 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 LP+M G F+I G +R++VSQLHRSPG+ F + + ++CRIIP++G W+++ Sbjct: 123 LPIMLGGGEFIINGSERVLVSQLHRSPGVDFVIN---VEPGERKTHSCRIIPERGSWIEL 179 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALG--MDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 K+ + VRID+ K + L A+ ++ E++ FYP Sbjct: 180 LISKKETLGVRIDQSGKFSAMTLLRAMDKSHSTDSELVKMFYPTESL------------- 226 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 ++ +K + L G VA+D Sbjct: 227 -EITRNSKA----------------------------------------EDLTGKVVADD 245 Query: 312 IVNG----ETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 I+ + GEI +E I E E+ S I+ + ++ + ++ I N+++ D Sbjct: 246 IIYPAGHEKCGEIIVECAHQIVETQAIELLESGIKTVEVV---TQVSDPLIINSILEDST 302 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 ++ALL IY+ +RPG+ A +FN FFD ++Y L VGR ++N + D DD Sbjct: 303 TSHEEALLRIYQRLRPGNPPQLDKAIDLFNEKFFDLNRYRLGRVGRFRINRKFKQDVSDD 362 Query: 428 VRHIRKEDIIAIIKILVDLRNGK--GTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +R D I L+ LR+G IDDIDNLGNRR+R++ E+ ++ R G L++ R+ Sbjct: 363 EMTLRPIDFSNSIHYLLRLRSGDDSAHIDDIDNLGNRRLRTIDELASDEIRKGFLKLRRT 422 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 ++ER+S D+D++ P+ LIN K + +A+ FF S+LSQ+ + N LS +TH RRLSALG Sbjct: 423 VQERMSLKDVDTMTPRTLINPKSISAAIDFFFGRSELSQVVDQTNPLSMLTHERRLSALG 482 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVH +HYGRICP ET EG NIGL+SSL+ +++V+ YGF+ TPY+K+ Sbjct: 483 PGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLSVYSKVDDYGFLITPYKKI 542 Query: 606 CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 DGKVT+++ +L A EE Y+A A++ EDG V R E + E I++ D Sbjct: 543 VDGKVTDEIEWLRADEEAKVYVAPADTP-TEDGKVAGTRVLARHHHEFVWTTPETIEYFD 601 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 SP Q+V ++A LIPFLE+DD+NR LMG NMQRQAVPLL E P VGTGME VVA++SG Sbjct: 602 ISPCQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLITEQPIVGTGMEKVVAENSGM 661 Query: 726 AIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 + A++AG V VDA I I Y L K+ N+ TC+NQ+PLV+VG Sbjct: 662 GVFAEKAGTVTFVDATVIEI------------DGKSYPLRKYMGLNERTCLNQKPLVRVG 709 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 ++V++ ++ D +T G+LALGRN+LVAFM W GYNFED++++SER+ EDV+TSIHI+ Sbjct: 710 EKVKKGQLLCDTAATRDGELALGRNVLVAFMSWEGYNFEDAIILSERLAKEDVYTSIHID 769 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 EF+V R+TKLG EE TRDIPNVSE+ L+++D GI+ +G V+PGDILVGK+TPK +S Sbjct: 770 EFDVEIRETKLGREEFTRDIPNVSEKALRHLDNNGIVQIGTRVSPGDILVGKVTPKAKSE 829 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +TPEEKLL AIFG DV++ SL VPSGV G V+ F+R S E E Sbjct: 830 LTPEEKLLHAIFGRAGEDVKNESLEVPSGVEGIVIHTEKFSRRMSLTESEKKSYESGLKE 889 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFA 1025 A + +E + + + + E G +S G + +V ++++Y + +F Sbjct: 890 --AETEGNEAIAVAFKDFLKTFEAELG-KHLSDEDGIEWRSVEDPKMLAQYAENFLQKFE 946 Query: 1026 VQDEKVQRNVESLKVQYETSKSILEDRFK---NKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 D + + + K SI+ED +K+ ++ GD++P GVL++VKV+VA KR Sbjct: 947 QLDIRSPQKIADCKKIISEHWSIVEDAIDARDSKLNTLKRGDELPSGVLQMVKVYVASKR 1006 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 I GDKMAGRHGNKG++S+ILP EDMPFL DGTPVDI+LNPLGVPSRMNVGQI ET LG Sbjct: 1007 QISVGDKMAGRHGNKGVISKILPVEDMPFLSDGTPVDIILNPLGVPSRMNVGQILETQLG 1066 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA LG + + D I Sbjct: 1067 WAAEKLGFRALCPVFDSIDEQGI------------------------------------- 1089 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 FD ++ A L G+S L+DG TGE F++ TVG IYMLKL+H+ Sbjct: 1090 --------FD---------LMGEAGLPTDGKSQLFDGRTGEAFEQKTTVGQIYMLKLHHL 1132 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DKV+AR+TG YSL+TQQPLGGK+ GGQR GEMEVW ++AYGAAY+LQE+LT+KSDDV Sbjct: 1133 VDDKVHARATGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDV 1192 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 GRT++YES+V G +T E GTP SF+VL E++ L L++ LE + Sbjct: 1193 EGRTKIYESMVKGENTLEAGTPASFDVLNNEIRGLCLNMQLEKTTG 1238 >gi|188996246|ref|YP_001930497.1| DNA-directed RNA polymerase, beta subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931313|gb|ACD65943.1| DNA-directed RNA polymerase, beta subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 1488 Score = 1181 bits (3056), Expect = 0.0, Method: Composition-based stats. Identities = 603/1470 (41%), Positives = 876/1470 (59%), Gaps = 106/1470 (7%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERP-NEGLQAAFKSVFPITAFSGAA 72 RK + EII PDL+ V K S+++F+ + P +R N+GL++ ++ FP +G Sbjct: 13 RKILSRRREIITPPDLLSVPKESFENFVQFHTNPLKRDPNKGLESLLRTSFPFVDPNGQL 72 Query: 73 MLEFVSYEFD--------------------------------PPKFDVDDCLWRDLTYAV 100 + ++ YE K V++C ++ LTY Sbjct: 73 EVRYIGYEIGDWECGKCGKALPDEVLGGPEVDCPHCGGPLIYKEKLTVEECKFKGLTYGA 132 Query: 101 PLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRS 160 PL++ L L++ D TG K IK+Q IY G++PL+T F+I G +RI+VSQL RS Sbjct: 133 PLRVLLELVINHTDPKTGEIIPKTIKKQKIYFGEIPLLTDYAYFMINGSERIIVSQLIRS 192 Query: 161 PGIHFDHDKGRA-SLSGKLLYACRIIPDQGLWMDIEFDSK-DIIHVRIDRRRKVPVTSFL 218 GI F + + + +++Y +IP++G +++++ + +I + +IDR RK+ T+ L Sbjct: 193 SGIFFSGKEDKTKDIITRVIYEGSVIPEKGSRVEVQYATNSEIFYAKIDR-RKILGTTLL 251 Query: 219 MALGMDSE-EILSTFYPKI-VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIES 276 A G+D+ +IL FY K+ Y + + + ++ + E++ E Sbjct: 252 RAFGLDTTYKILKNFYGKVDRYIVEDGKLVLENTKIPVNLEELMNRDIFVTYVYEEISEK 311 Query: 277 GKKLTSGLLKSLKEKGVKFLGITSD-CLCGLYVAED-IVNGETGEIYIEAGDVIDEKSLE 334 G+ + K + + ++ L + + E ++N + I DE + Sbjct: 312 GQPVPIKQEKYVSVENLEKLLNDDRIRIEEVVTVEPQVINKSPYQRVIVETLKKDEPKIN 371 Query: 335 EIFHSEIRDIPILYVDS-------VNNNAYIRNTLVTDKNKDRKDALLDIYRV------- 380 +F + +Y ++ A+++ N D+ RV Sbjct: 372 ALFTFRDAALVEIYRKMRPTDTAVLDPKAFMKRAKELFNNMFADIQRYDLSRVGRVKLNA 431 Query: 381 --------MRPGDVSTFSVAESMFNFLFFDSDKY---------DLSTVGRVKMNM----R 419 ++P D+ F + K DL + ++K + Sbjct: 432 KVHNVPKTIKPLDLEDFFEKFPLLALDEDVKTKNGVIPKGTKIDLVVLEKLKETSFKEIK 491 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 + ++ R ++ DIIAI+K L++LR GK ++DDI +LGNRRVR VGE+L+ Q R+G+ Sbjct: 492 VKEYLDEEARTLQLADIIAIVKYLLELRYGKKSLDDIAHLGNRRVRPVGELLEAQARIGI 551 Query: 480 LRMERSIKERISSVDID--SVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 RM+++ ++R+++VD++ ++ P +LIN + + +++ EF S QLSQ + N LS +TH Sbjct: 552 ARMQKAFRDRVATVDVEDPNLKPSELINPRYLTNSILEFLKSGQLSQFMDQTNPLSELTH 611 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG+ R A E+RDVHP+HYGRICP ET EG NIGLVSS+T ++R+N +GF Sbjct: 612 KRRLSALGPGGLTRESAKFEIRDVHPSHYGRICPIETPEGQNIGLVSSMTVYSRINEFGF 671 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 + +PYRKV DG VTN++ YL+A EEE IAQAN+ +DE G F + V R G+ LV Sbjct: 672 LISPYRKVVDGVVTNEIEYLTAYEEEKYVIAQANAEIDEKGRFLTDRVLARAYGDIRLVE 731 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 ++ ++D SPKQVVS +ASLIPFLE+DD+NR LMG NMQRQAVPL++ E P VGTGME Sbjct: 732 PNEVHYMDISPKQVVSPSASLIPFLEHDDANRALMGSNMQRQAVPLVRTEYPLVGTGMEV 791 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG---DLDPSTSGVDIYRLMKFQRSNQNT 774 +AK SG+ IVAKR G V +VD IVI+ E DP G+DIY+L KF+ SNQ T Sbjct: 792 SIAKDSGSVIVAKRGGEVVKVDGNTIVIKVNEDEINPHDPLDIGMDIYKLNKFKGSNQAT 851 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQRPLV+ GD V + IADG ST G+LALG+N+LVAFMPW GYNFED+++ISER+V Sbjct: 852 CMNQRPLVRKGDIVEKGATIADGTSTYKGELALGKNVLVAFMPWRGYNFEDAIVISERLV 911 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +DVFTSIHIEEFE+ AR+TKLGPEEITR+IP ++E L N+DE G+I VGA V PGDIL Sbjct: 912 KDDVFTSIHIEEFEIEARETKLGPEEITRNIPGINERQLANLDEHGVIRVGAYVKPGDIL 971 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 VGK+TPKGE+ +TPEEKLL AIFGEKA +V+D+SLRVP GV G VVDV+IF + DK E Sbjct: 972 VGKVTPKGETALTPEEKLLFAIFGEKASEVKDSSLRVPVGVEGVVVDVQIFAKKKKDKKE 1031 Query: 955 RSI----SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSS 1010 + ++ +++++ L + ++++ + + L EIL G K + + Sbjct: 1032 KREKYLDTLIKQEVDKLNLELEEKKKFILDKRDAWLREILIGVKVAKDVKVAGEVIIPEG 1091 Query: 1011 DLISEYPRSQWWQFA-------VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWG 1063 + I+E SQ + ++D+K+ + VES+ + ++ + E ++ + E +Q G Sbjct: 1092 EYITENNVSQAIKIIAINPSNFIKDKKLIKKVESIIEKAKSQIELWEKIYEKRKEAVQEG 1151 Query: 1064 DDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLN 1123 D+ PGV +VKV++A KR IQ GDKMAGRHGNKG++S +LP EDMPF++DGTPVDIVLN Sbjct: 1152 ADLKPGVNELVKVYIAQKRKIQVGDKMAGRHGNKGVISVVLPVEDMPFMEDGTPVDIVLN 1211 Query: 1124 PLGVPSRMNVGQIFETHLGWACVGLGKK--------------IKSLINDYKANGDISPLR 1169 PLGVPSRMNVGQI ETHLG A LG+K I ++ Y D Sbjct: 1212 PLGVPSRMNVGQILETHLGLAAKKLGEKLGKELEKIFDREKIIDKIVEYYSIVNDTDNKI 1271 Query: 1170 SFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS-GVPVSTPVFDGADEEAINSMLRMADL 1228 ++ + E +S DD+S+ + G+PV T +F+ A EE I +L A + Sbjct: 1272 LTKQRKKDSQELREALSKLDDESLRDLVRDLTKIGIPVETAIFESASEEDIKKLLNYAGI 1331 Query: 1229 DESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 ++G+ L DG +GE FD VT GY+YMLKL HMV DK++ARSTG YSL+TQQPLGG++ Sbjct: 1332 KDNGKVKLIDGRSGEAFDLEVTAGYMYMLKLIHMVDDKIHARSTGPYSLITQQPLGGRAQ 1391 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++A+GAAY L+EMLT+KSDD+ GR RVYE+I+ G ++ G PESF Sbjct: 1392 FGGQRFGEMEVWALEAHGAAYTLREMLTVKSDDIEGRKRVYEAIIKGKHYYDIGVPESFK 1451 Query: 1349 VLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 VLV+E++ALGL+++ + E+ Sbjct: 1452 VLVRELKALGLNVECIVEGEPQACDTSELE 1481 >gi|283780325|ref|YP_003371080.1| DNA-directed RNA polymerase subunit beta [Pirellula staleyi DSM 6068] gi|283438778|gb|ADB17220.1| DNA-directed RNA polymerase, beta subunit [Pirellula staleyi DSM 6068] Length = 1240 Score = 1180 bits (3053), Expect = 0.0, Method: Composition-based stats. Identities = 543/1366 (39%), Positives = 787/1366 (57%), Gaps = 152/1366 (11%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R + FG + +PDL +Q ASY FL ++ ++R ++GL+ K +FPI ++ Sbjct: 12 RESRRFGSGISVQTMPDLTVIQTASYAAFLQDDLPAEKRKDQGLEGVLKEIFPIESYDKT 71 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 L+++ Y+ P++ ++C LTY P +I LRL + + E+ +Y Sbjct: 72 IKLDYLRYDLGKPRYTPEECRQLRLTYGRPFRIWLRL------------NKEQPIEEEVY 119 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 +GD+P+M G F+I G +R+VVSQLHRSPG+ F ++ S + L +CRIIP++G W Sbjct: 120 LGDIPIMLGGGEFIINGAERVVVSQLHRSPGVDFVMEQDGT--SDRKLPSCRIIPERGSW 177 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMAL--GMDSE-EILSTFYPKIVYSQRGDFWCFP 248 +++ ++ + +RID+ K + L A+ ++ +++ FYP + Sbjct: 178 IEVNVTKREALSIRIDQSGKFSALTLLRAMSPKYSTDSDLIRAFYPPTIEKITDGRSVVK 237 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + G+ ++ V Sbjct: 238 IE-------------------GKIAVD-------------------------------DV 247 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 + GEI +EAG I + + E I S + + ++ V I N+L D Sbjct: 248 CYPSGSDRAGEIIVEAGHKITKNAAETICTSGVTKVEVI---PVPKVPVIFNSLAEDTTS 304 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 ++ALL IY+ +RPG+ A+++F FFD ++Y L VGR ++N +L L+T D Sbjct: 305 SHEEALLRIYQRLRPGNPPQLEKAKTLFAEKFFDVNRYRLGRVGRFRVNRKLKLETSDKE 364 Query: 429 RHIRKEDIIAIIKILVDLRNGKG--TIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 + ED+IA I L+DL G G IDDID+LGNRR+R++ E+ ++ R G L++ R++ Sbjct: 365 MTLNPEDLIASIAYLLDLMGGTGDAHIDDIDHLGNRRLRTIDELASDELRKGFLKLRRTV 424 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 +ER+S D++ + P+ L+N K + +A+ FF +LSQ+ + N LS++TH RRLSALG Sbjct: 425 QERMSLKDVEDMTPRSLVNPKSISAAIEYFFGRGELSQVVDQTNPLSQLTHERRLSALGP 484 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG+ R RAG E+RDVH +HYGRICP ET EG NIGL+SSL +A V+ YGF+ PYRKV Sbjct: 485 GGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIYAGVDEYGFLVAPYRKVN 544 Query: 607 DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 GK+T +VV+L A EE + Y+A A++++ + + R + +V +++ FID Sbjct: 545 KGKLTEEVVWLRADEEADAYVAPADTAVQDGKIVQSASLIARHRSDFEIVLPDQVQFIDV 604 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 +P Q+V ++A LIPFLE+DD+NR LMG NMQRQAVPLL E P V TGME VA++S Sbjct: 605 APSQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVTEPPIVATGMEKDVARNSSMV 664 Query: 727 IVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGD 786 + AKRAG V DA RI I G DIY L K+Q N+ TC+NQ+P++K+GD Sbjct: 665 VRAKRAGKVTYCDATRIEI------------GSDIYHLKKYQGLNERTCLNQKPIIKLGD 712 Query: 787 EVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEE 846 +V +N ++ADG +T G+LALGRN+LV FM + GYNFED+++IS+ +V D +TSIHIEE Sbjct: 713 KVEKNQVLADGAATYNGELALGRNVLVGFMSFDGYNFEDAIIISQELVQNDTYTSIHIEE 772 Query: 847 FEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPM 906 F+V R+TKLG EE TRDIPNVSE+ L+N+DE GI+ +G V PGDILVGK++PK ++ + Sbjct: 773 FDVEIRETKLGREEFTRDIPNVSEKALRNLDENGIVRIGTFVKPGDILVGKVSPKSKTEL 832 Query: 907 TPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 TPEEKLL AIFG DV++ SL VPSG+ G V+D + F+R + ER++ E Sbjct: 833 TPEEKLLHAIFGRAGEDVKNDSLEVPSGIEGIVIDTQKFSRRMSLSED-----ERKKFEK 887 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFA- 1025 +D + E + L+E L + ++ T L D ++ + F Sbjct: 888 ELKDAETEGNKWIAQAFGTLVEELEAVVGKTLTD--EEGTPLVKDQDPKFVSERAANFQL 945 Query: 1026 ------VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 ++ + E + Q+ + + D K+ ++ GD++ GVL++VKV+++ Sbjct: 946 LKITSKLRSDDKIAEAEKVYKQHWPNVELAIDNRDRKLNSMKRGDELRSGVLQMVKVYIS 1005 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR I GDKMAGRHGNKG++++ILP EDMPFL DGT V I+LNPLGVPSRMNVGQI ET Sbjct: 1006 TKRVISVGDKMAGRHGNKGVIAKILPIEDMPFLPDGTSVQIMLNPLGVPSRMNVGQILET 1065 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 HLGWA LG + + + D GDI+ Sbjct: 1066 HLGWAGAALGFQAVTPVFDGATEGDINDCLEAAG-------------------------- 1099 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 L + L+DG TGE + TVGY+YMLKL Sbjct: 1100 -----------------------LPRHG-----KQRLFDGRTGEALQQETTVGYLYMLKL 1131 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DKV+ARSTG YSL+TQQPLGGK+ GGQR GEMEVW ++AYGAAY+LQE+LT+KS Sbjct: 1132 HHLVDDKVHARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKS 1191 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 DDV GRT++YES+V G +T E GTP SF VL E++ L L++ LE Sbjct: 1192 DDVEGRTKIYESMVKGENTLEAGTPASFEVLTNEIRGLALNMQLEK 1237 >gi|32473688|ref|NP_866682.1| DNA-directed RNA polymerase beta chain [Rhodopirellula baltica SH 1] gi|32444224|emb|CAD74221.1| DNA-directed RNA polymerase beta chain [Rhodopirellula baltica SH 1] gi|327540885|gb|EGF27445.1| DNA-directed RNA polymerase subunit beta [Rhodopirellula baltica WH47] Length = 1261 Score = 1171 bits (3029), Expect = 0.0, Method: Composition-based stats. Identities = 539/1358 (39%), Positives = 770/1358 (56%), Gaps = 139/1358 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK FG D+PDL +Q SY FL + A + R + GL++ + +FPI ++ G Sbjct: 35 IRK-FGTGLGQFDLPDLTALQTVSYAAFLQEDAASNARKDHGLESVLREIFPIASYDGNT 93 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE++ YE P++ + +C LTY PL+I LRL + ++ E+ +Y+ Sbjct: 94 TLEYLYYELGKPRYTIQECRQLRLTYGRPLRIWLRL------------NREEPIEEEVYL 141 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 GDLP+M G F+I G +R+VVSQLHRSPG+ F ++ + + L +CR+IP++G W+ Sbjct: 142 GDLPIMLGGGEFIINGAERVVVSQLHRSPGVDFVLEQDTT--TDRKLPSCRVIPERGSWI 199 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALG--MDSE-EILSTFYPKIVYSQRGDFWCFPL 249 ++ KD + VRID+ K T L A+ ++ ++LS FY G + Sbjct: 200 EVNVTKKDALTVRIDQSGKFAATMLLRAMDPKYSTDADLLSAFYETGTIKVNGGKDATKI 259 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 + + V Sbjct: 260 E-------------------------------------------NKIAVDD-------VV 269 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 + GEI +EAG I + E I ++ + + + + V I NTL D Sbjct: 270 YPSGHERAGEIIVEAGYKITTELSETICNAGVTSVEAMDLPKV---PLIFNTLADDNTAS 326 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 ++ALL IY+ +RPG+ A ++F F+D ++Y L VGR ++N +L L + V Sbjct: 327 HEEALLRIYQRLRPGNPPQLEKARTLFQEKFYDDNRYRLGKVGRFRLNRKLGLGVEETVM 386 Query: 430 HIRKEDIIAIIKILVDLRNGK--GTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 +R +D+IA I+ L+DL + IDDID+LGNRR+R++ E+ + R G L++ R+++ Sbjct: 387 TLRPDDMIAAIRYLIDLFDADSGAEIDDIDHLGNRRLRTIDELASEELRKGFLKLRRTVQ 446 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+S D + P+ LIN K V +A+ FF +LSQ+ + N LS++ H RRLSALG G Sbjct: 447 ERMSVKDAQDMTPRSLINPKSVSAAIDFFFGRGELSQVVDQTNPLSQLAHERRLSALGPG 506 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVH +HYGRICP ET EG NIGL+SSL +A V+ YGF+ TP+RKV D Sbjct: 507 GLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIYAGVDDYGFLCTPFRKVID 566 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GK++++ V+L A EE Y+A A++ + + + R + +V E++ F+D + Sbjct: 567 GKISDETVWLRADEEGESYVAPADTEVKDGALVPGPNMIARFRSDFEIVMPEQVSFMDVA 626 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+V ++A LIPFLE+DD+NR LMG NMQRQAVPLL E P VGTGME VAK+S + Sbjct: 627 PAQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVTEPPIVGTGMEREVAKNSAMVV 686 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+RAG V DA RI I G D Y L K+Q N+ TC NQ+PL+ VGD+ Sbjct: 687 RARRAGKVTYADATRIEI------------GSDHYPLKKYQGLNERTCQNQKPLITVGDK 734 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V + IIADG +T G+LALGRN+LV FM + G+N+ED+++ISE +V D +TSIHIE+F Sbjct: 735 VEKGQIIADGAATQKGELALGRNVLVGFMSFDGFNYEDAIIISEELVRNDTYTSIHIEDF 794 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 +V R+TKLG EE TRDIPNVSE+ L+N+D+ GI+ G V PGDILVGK++PK ++ +T Sbjct: 795 DVEIRETKLGREEFTRDIPNVSEKALRNLDDTGIVQTGTYVKPGDILVGKVSPKSKTELT 854 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLL AIFG DV++ SL VPSG+ G V+D + F+R + + ERE + Sbjct: 855 PEEKLLHAIFGRAGEDVKNDSLEVPSGIEGIVIDTQKFSRRMSLGEDERKAFERELKQHE 914 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 ++ + I +G + R + ++ Sbjct: 915 TEGNEEIASTFESLIRDMEEASGVKLKDSTGTPLADGQDPKFVAERATSFRLELVLEQIE 974 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DE+ ++ E + + D K+ ++ GD++ GVL++VK+++A KR I G Sbjct: 975 DEEKRKAAEKVHQTQWQNVEQAIDERDRKLNSMKRGDELRSGVLQMVKIYIATKRTISVG 1034 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++++ILP EDMPFL DGTP+ I+LNPLGVPSRMNVGQI ETHLGWA Sbjct: 1035 DKMAGRHGNKGVIAKILPIEDMPFLPDGTPIQIMLNPLGVPSRMNVGQILETHLGWAGAK 1094 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG + + I D + +I+ + Sbjct: 1095 LGFQALTPIFDGASESEINDCLAEAGLPAHGKIRL------------------------- 1129 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 G++ GEP ++ TVGYIYMLKL+H+V DKV Sbjct: 1130 ----------------------TDGRT-------GEPMEQETTVGYIYMLKLHHLVDDKV 1160 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSL+TQQPLGGK+ GGQR GEMEVW ++AYGAAY+LQE+LT+KSDDV GRT+ Sbjct: 1161 HARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTK 1220 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 +YES+V G +T E GTP SF+VL E++ L L++ LE Sbjct: 1221 IYESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLEK 1258 >gi|41017927|sp|Q7URW6|RPOB_RHOBA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1240 Score = 1169 bits (3024), Expect = 0.0, Method: Composition-based stats. Identities = 539/1358 (39%), Positives = 770/1358 (56%), Gaps = 139/1358 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK FG D+PDL +Q SY FL + A + R + GL++ + +FPI ++ G Sbjct: 14 IRK-FGTGLGQFDLPDLTALQTVSYAAFLQEDAASNARKDHGLESVLREIFPIASYDGNT 72 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LE++ YE P++ + +C LTY PL+I LRL + ++ E+ +Y+ Sbjct: 73 TLEYLYYELGKPRYTIQECRQLRLTYGRPLRIWLRL------------NREEPIEEEVYL 120 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 GDLP+M G F+I G +R+VVSQLHRSPG+ F ++ + + L +CR+IP++G W+ Sbjct: 121 GDLPIMLGGGEFIINGAERVVVSQLHRSPGVDFVLEQDTT--TDRKLPSCRVIPERGSWI 178 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALG--MDSE-EILSTFYPKIVYSQRGDFWCFPL 249 ++ KD + VRID+ K T L A+ ++ ++LS FY G + Sbjct: 179 EVNVTKKDALTVRIDQSGKFAATMLLRAMDPKYSTDADLLSAFYETGTIKVNGGKDATKI 238 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 + + V Sbjct: 239 E-------------------------------------------NKIAVDD-------VV 248 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 + GEI +EAG I + E I ++ + + + + V I NTL D Sbjct: 249 YPSGHERAGEIIVEAGYKITTELSETICNAGVTSVEAMDLPKV---PLIFNTLADDNTAS 305 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVR 429 ++ALL IY+ +RPG+ A ++F F+D ++Y L VGR ++N +L L + V Sbjct: 306 HEEALLRIYQRLRPGNPPQLEKARTLFQEKFYDDNRYRLGKVGRFRLNRKLGLGVEETVM 365 Query: 430 HIRKEDIIAIIKILVDLRNGK--GTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 +R +D+IA I+ L+DL + IDDID+LGNRR+R++ E+ + R G L++ R+++ Sbjct: 366 TLRPDDMIAAIRYLIDLFDADSGAEIDDIDHLGNRRLRTIDELASEELRKGFLKLRRTVQ 425 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 ER+S D + P+ LIN K V +A+ FF +LSQ+ + N LS++ H RRLSALG G Sbjct: 426 ERMSVKDAQDMTPRSLINPKSVSAAIDFFFGRGELSQVVDQTNPLSQLAHERRLSALGPG 485 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 G+ R RAG E+RDVH +HYGRICP ET EG NIGL+SSL +A V+ YGF+ TP+RKV D Sbjct: 486 GLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIYAGVDDYGFLCTPFRKVID 545 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 GK++++ V+L A EE Y+A A++ + + + R + +V E++ F+D + Sbjct: 546 GKISDETVWLRADEEGESYVAPADTEVKDGALVPGPNMIARFRSDFEIVMPEQVSFMDVA 605 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P Q+V ++A LIPFLE+DD+NR LMG NMQRQAVPLL E P VGTGME VAK+S + Sbjct: 606 PAQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVTEPPIVGTGMEREVAKNSAMVV 665 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 A+RAG V DA RI I G D Y L K+Q N+ TC NQ+PL+ VGD+ Sbjct: 666 RARRAGKVTYADATRIEI------------GSDHYPLKKYQGLNERTCQNQKPLITVGDK 713 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V + IIADG +T G+LALGRN+LV FM + G+N+ED+++ISE +V D +TSIHIE+F Sbjct: 714 VEKGQIIADGAATQKGELALGRNVLVGFMSFDGFNYEDAIIISEELVRNDTYTSIHIEDF 773 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 +V R+TKLG EE TRDIPNVSE+ L+N+D+ GI+ G V PGDILVGK++PK ++ +T Sbjct: 774 DVEIRETKLGREEFTRDIPNVSEKALRNLDDTGIVQTGTYVKPGDILVGKVSPKSKTELT 833 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 PEEKLL AIFG DV++ SL VPSG+ G V+D + F+R + + ERE + Sbjct: 834 PEEKLLHAIFGRAGEDVKNDSLEVPSGIEGIVIDTQKFSRRMSLGEDERKAFERELKQHE 893 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 ++ + I +G + R + ++ Sbjct: 894 TEGNEEIASTFESLIRDMEEASGVKLKDSTGTPLADGQDPKFVAERATSFRLELVLEQIE 953 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 DE+ ++ E + + D K+ ++ GD++ GVL++VK+++A KR I G Sbjct: 954 DEEKRKAAEKVHQTQWQNVEQAIDERDRKLNSMKRGDELRSGVLQMVKIYIATKRTISVG 1013 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++++ILP EDMPFL DGTP+ I+LNPLGVPSRMNVGQI ETHLGWA Sbjct: 1014 DKMAGRHGNKGVIAKILPIEDMPFLPDGTPIQIMLNPLGVPSRMNVGQILETHLGWAGAK 1073 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG + + I D + +I+ + Sbjct: 1074 LGFQALTPIFDGASESEINDCLAEAGLPAHGKIRL------------------------- 1108 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 G++ GEP ++ TVGYIYMLKL+H+V DKV Sbjct: 1109 ----------------------TDGRT-------GEPMEQETTVGYIYMLKLHHLVDDKV 1139 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSL+TQQPLGGK+ GGQR GEMEVW ++AYGAAY+LQE+LT+KSDDV GRT+ Sbjct: 1140 HARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTK 1199 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 +YES+V G +T E GTP SF+VL E++ L L++ LE Sbjct: 1200 IYESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLEK 1237 >gi|149177090|ref|ZP_01855698.1| DNA-directed RNA polymerase beta chain [Planctomyces maris DSM 8797] gi|148844155|gb|EDL58510.1| DNA-directed RNA polymerase beta chain [Planctomyces maris DSM 8797] Length = 1238 Score = 1165 bits (3014), Expect = 0.0, Method: Composition-based stats. Identities = 536/1363 (39%), Positives = 770/1363 (56%), Gaps = 148/1363 (10%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 K FGK ++ DL ++Q +SY FL + +P ER N+GL+ + VFPI ++ G L Sbjct: 15 KNFGKIEHGFELSDLTQIQTSSYASFLQADKSPRERKNQGLEEILREVFPIESYQGQYQL 74 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 E+V YE P++ +C +TY P ++ LRL+ + E+ +Y+GD Sbjct: 75 EYVKYELGKPRYTPTECRQLRMTYGRPFRVWLRLV------------KEQPIEEEVYLGD 122 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 LP+M G F+I G +R +VSQLHRSPG+ F + K Y+CR+IP++G W+++ Sbjct: 123 LPVMIGGGEFIINGAERCIVSQLHRSPGVDFVLS---SEPGEKKEYSCRVIPERGSWIEL 179 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMAL--GMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 KD + VRID+ K + L A+ S+ +++ FY Sbjct: 180 VVGKKDTLGVRIDQSGKFSAMTLLRAMSKDYSSDTDLVKLFYDT---------------- 223 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 +K++S + L G VAED Sbjct: 224 ------------------------KSEKISSSNA--------------MEKLLGKIVAED 245 Query: 312 IVNG----ETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 ++ GE+ ++ I E+ ++EI + ++ + I+ + + ++ D Sbjct: 246 VIYPAGHDRCGEVILDCCGTITEELIDEIVDTGLKTVEIVD---EVTDVLVLQSIAEDPT 302 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 ++ALL IY +RPG+ A +F FFD ++Y L VGR ++N + D PD Sbjct: 303 ATHEEALLRIYSRLRPGNPPQLERAIDLFKEKFFDVNRYRLGRVGRFRINRKFKQDVPDT 362 Query: 428 VRHIRKEDIIAIIKILVDLRNGK--GTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +R ED I I+ LV LR G+ +DDIDNLGNRR+R++ E+ ++ R G L++ R+ Sbjct: 363 EMTLRPEDFINSIRYLVRLRVGESSAYVDDIDNLGNRRLRTIDELASDEIRKGFLKLRRT 422 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 ++ER++ D++ + P+ LIN K V +A+ FF S+LSQ+ + N LS +TH RRLSALG Sbjct: 423 VQERMTQKDVEEMSPRTLINPKSVSAAIDFFFGRSELSQVVDQTNPLSMLTHERRLSALG 482 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVH +HYGRICP ET EG NIGL+SSL+ F++V+ YGF+ TPYR V Sbjct: 483 PGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLSIFSKVDDYGFLVTPYRYV 542 Query: 606 CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 +GK+T++V ++ A EE ++A A++ + E+G F E+ V R + + + +D+ID Sbjct: 543 KNGKLTDEVHWMRADEEAEVHVAPADTPV-ENGKFIEDRVMARHRDDVVWIAAGDVDYID 601 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 P Q+V I+A LIPFLE+DD+NR LMG NMQRQAVPLL AE P VGTGME VA++SG Sbjct: 602 VDPAQMVGISAGLIPFLEHDDANRALMGSNMQRQAVPLLIAEPPLVGTGMEVAVAQNSGM 661 Query: 726 AIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 + A++AG V VD + + YRL K++ N+ TC+NQ P V VG Sbjct: 662 VVRAEKAGKVTYVDGNVVEVNG------------KKYRLRKYEGLNERTCLNQTPAVSVG 709 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 D+V++ I+ + G LALGRN+LV FM W GYNFED++++SER+V EDV+TSIHI+ Sbjct: 710 DQVKKGQILCHSAAAADGLLALGRNVLVGFMSWDGYNFEDAIILSERLVKEDVYTSIHID 769 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 EF+V R+TKLG EE TRDIPNVSE+ L++I E GII VG V GDILVGK++PK ++ Sbjct: 770 EFDVEIRETKLGREEFTRDIPNVSEKALRHIGEDGIIKVGTRVRQGDILVGKVSPKAKAE 829 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +TPEEKLL AIFG DV++ SL SGV G V+ F R + + E + Sbjct: 830 LTPEEKLLHAIFGRAGEDVKNESLEASSGVEGIVIHTEKFARRMSLTDYERKQYDEELKK 889 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFA 1025 + + + + G K + + S Sbjct: 890 VEEEGNHQIAEEFRDFLKTFENALGQPMVDDDGRKVREIPEDKFVSQYAHDFLSHLDDMD 949 Query: 1026 VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 ++ + + + ++ + + + K+ ++ G+++P GVL++VKV+VA KR I Sbjct: 950 IRSPQKKADCRAVIEDLWPNVEDVIETCDQKVNSMKRGEELPNGVLQMVKVYVASKRQIS 1009 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG++S++LP EDMPF +DGTP+DI+LNPLGVPSRMNVGQI ETHLGWA Sbjct: 1010 VGDKMAGRHGNKGVISKVLPIEDMPFTEDGTPIDIMLNPLGVPSRMNVGQILETHLGWAA 1069 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 G + + D I L A K G Sbjct: 1070 EKHGFRAVCPVFDGAMESQIQ-------------------------EFLETAGLPKDG-- 1102 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 ++ L+DG TGE +++ TVG IYMLKL+H+V D Sbjct: 1103 ---------------------------KAQLFDGRTGEAYEQKTTVGQIYMLKLHHLVDD 1135 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 KV+ARSTG YSL+TQQPLGGK+ GGQR GEMEVW ++AYGAAY+LQE+LT+KSDDV GR Sbjct: 1136 KVHARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGR 1195 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 T++YES+V G +T E GTP SF+VL E++ LGL++ LE + Sbjct: 1196 TKIYESMVNGENTLEAGTPASFDVLNNEIRGLGLNLQLEKNPG 1238 >gi|149198915|ref|ZP_01875956.1| DNA-directed RNA polymerase subunit beta [Lentisphaera araneosa HTCC2155] gi|149137910|gb|EDM26322.1| DNA-directed RNA polymerase subunit beta [Lentisphaera araneosa HTCC2155] Length = 1263 Score = 1163 bits (3008), Expect = 0.0, Method: Composition-based stats. Identities = 581/1380 (42%), Positives = 808/1380 (58%), Gaps = 145/1380 (10%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +R+ FGK E+ID PDLI VQ S+ FL PD R +GLQ AF +FPI +F Sbjct: 3 IRQNFGKLEEVIDTPDLISVQLESFREFLQETTNPDSREKKGLQEAFNEIFPIKSFDENC 62 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +L FV YE P ++ DCL +Y L +T L + D + + ++ E+ ++M Sbjct: 63 ILNFVKYEIGTPNVNMYDCLKDGESYQAGLHVTFELEIKDENGKS------ELFEERVFM 116 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 GD+P+MT TF+I G +R+++SQLHR+PGI F+ K S K LY+ RIIPD+G WM Sbjct: 117 GDIPVMTPRATFIINGAERVIISQLHRTPGICFEAGKS---TSNKTLYSFRIIPDRGSWM 173 Query: 193 DIEFDSKDIIHVRID---RRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 ++++D+ D+I++ +D RRRK +++FL A+ +S ++L Y + Sbjct: 174 EVQYDNHDLIYIFMDRRRRRRKFLISTFLRAVYSESNYDLLDCVYGVQNVTV------AS 227 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 L+ + + K+ + + G + ++ + L+S +L +K+ GVK L Sbjct: 228 LAKDESTLAEKILVDDITDENGTLIAKTLEPLSSSILDLVKDAGVKKL------------ 275 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 DIV+ I L D Sbjct: 276 --DIVDT---------------------HELGTTFITNLEKDP---------------TT 297 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN------- 421 +R+DAL IY+ MRPGD + A+ + N LFFD YDL VGR K+ RL Sbjct: 298 NREDALKYIYKKMRPGDPANIENAQGLLNRLFFDLKSYDLGKVGRYKIQQRLRNAFDGDQ 357 Query: 422 -----LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 L P + R + D++A L+ ++N G +DDID+LG+RRVRSVGE+++NQ+R Sbjct: 358 FKSKDLPLPTEERTLTPSDMVAATITLMKIKNTHGRVDDIDHLGSRRVRSVGELVQNQFR 417 Query: 477 LGLLRMERSIKERISSVDIDS--VMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 GL R ER I+ER++ D +S +MP LIN K + S V +FF SQLSQ + N LS Sbjct: 418 SGLSRTERLIRERMTLYDKNSTAIMPSKLINPKALQSVVRDFFGRSQLSQFMDQTNPLSE 477 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +T RRLSALG GG++R RAG E+RDVH +HYGRICP ET EG NIGL+SSL +A++N Sbjct: 478 LTAKRRLSALGPGGLSRERAGFEVRDVHSSHYGRICPIETPEGPNIGLISSLACYAKINP 537 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 YGF+ETPYRK DGKVT ++ Y++ EE+ +AQAN+ L++D + E V R G+ + Sbjct: 538 YGFLETPYRKFVDGKVTEEIEYVTGDIEEDFVVAQANTVLNDDNTVAEAYVLARTDGDSV 597 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 V ++KI +D SPKQ++S A IPF+E+DD+NR LMG NMQRQAVPLLK ++P VGTG Sbjct: 598 EVEKDKITHMDVSPKQLISPATGCIPFIEHDDANRALMGSNMQRQAVPLLKPDSPLVGTG 657 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD-IYRLMKFQRSNQN 773 ME++VAK S A + AK GIV + +I+I D + IY L KF RSN + Sbjct: 658 MEALVAKGSRAVLTAKADGIVASSVSDKIIITKDGVLKDEEDLKPENIYNLYKFMRSNSS 717 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 TC+NQ+PLVK GD V+ D+IADG TD G+LALG+N+LVAFMPW GYNFED+++ISER+ Sbjct: 718 TCMNQKPLVKAGDVVKAGDVIADGFGTDNGELALGQNVLVAFMPWCGYNFEDAIIISERL 777 Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDI 893 V +DVFTSIHI E + ARDTKLGPEEITRD PNV EE L+N+ G+I +G+EV PGDI Sbjct: 778 VQDDVFTSIHIAEASIQARDTKLGPEEITRDTPNVGEEALRNLGPEGVIRLGSEVGPGDI 837 Query: 894 LVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKN 953 LVGKITPK E+ + PEE+LLRAIFG+KA DV+D+SL V S SG V+D+R+ + K Sbjct: 838 LVGKITPKSETELAPEERLLRAIFGDKAADVKDSSLYVASSTSGIVMDIRVDRKIDPTKA 897 Query: 954 ERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL----- 1008 + S + + + + + + ++ +L IL G + + Sbjct: 898 AVTKSDLKRKRKEIDAEYKVQYNEFLEDLAEKLGAILLGSKLSNDIVSKDGKETIIVPAN 957 Query: 1009 --SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDM 1066 + ++ +Q + + D + ++ + ++ + + R KI+++ + Sbjct: 958 RKITKVLLRKLSAQHDNYTMVDSPAKAQIDEVMGNFKPRLNDIRLRNSEKIDQLADENSQ 1017 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 GV++ VKV++A KR I GDKMAGRHGNKGI+S I+P D+PF+KDGT VDI+LNPLG Sbjct: 1018 ERGVIKSVKVYIASKRKISVGDKMAGRHGNKGIISNIVPKSDLPFMKDGTVVDIILNPLG 1077 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMNVGQI ETHLG A +G KI + + D I+ + + + Sbjct: 1078 VPSRMNVGQILETHLGMAANRMGIKIATPVFDGCPESIINDMLEEVGYDRDGKARL---- 1133 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 G++ G+ FD Sbjct: 1134 -------------------------------------------YDGRT-------GDSFD 1143 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 + +TVG IYMLKL+H+V +K++AR+ G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1144 QRITVGMIYMLKLDHLVVNKIHARAVGPYSLVTQQPLGGKAQHGGQRFGEMEVWALEAYG 1203 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQEMLT+KSDDV GRTR+YESIV G+++ G PESFNVL+KEM +L L I L Sbjct: 1204 AAYTLQEMLTVKSDDVEGRTRIYESIVRGDNSLVAGLPESFNVLMKEMMSLCLDIRLRKE 1263 >gi|296120714|ref|YP_003628492.1| DNA-directed RNA polymerase, subunit beta [Planctomyces limnophilus DSM 3776] gi|296013054|gb|ADG66293.1| DNA-directed RNA polymerase, beta subunit [Planctomyces limnophilus DSM 3776] Length = 1238 Score = 1157 bits (2994), Expect = 0.0, Method: Composition-based stats. Identities = 555/1367 (40%), Positives = 784/1367 (57%), Gaps = 149/1367 (10%) Query: 9 GLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF 68 R FG I +L ++Q ASY FL + P ER ++GL+A + VFPI ++ Sbjct: 10 ETHETRH-FGSIRGEFAISELTQIQTASYHRFLQLESEPRERADDGLEAILREVFPIESY 68 Query: 69 SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LE++ YE P++ +C LTY P ++ LRL+ + +E+ Sbjct: 69 DQKYRLEYIKYELGKPRYTPLECRQLRLTYGRPFRVWLRLM------------KEQPQEE 116 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 +Y+GDLP+M G F+I G +R+VVSQLHRSPG+ F A K ++CR+IP++ Sbjct: 117 EVYLGDLPIMIGGGEFIINGSERVVVSQLHRSPGVDFVMS---AEPGEKKTFSCRVIPER 173 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFP 248 G W+++ +D ++VRID+ K +FL A+ Sbjct: 174 GSWIELNIGKRDTLNVRIDQSGKFSAMTFLRAM--------------------------- 206 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 D G + LV + + + + G + Sbjct: 207 ----DPAYGR--TKDLVKLFHNVVTFKVSDS------------------HFVEHVAGKHA 242 Query: 309 AEDIVNG----ETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVT 364 A+DIV GEI EA VI + EEI S I+ + + +++ I ++L+ Sbjct: 243 ADDIVYPAGHERMGEIICEACHVITKPLAEEIKESGIKTVDVA---EKSDDPIIMDSLIE 299 Query: 365 DKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDT 424 D +DALL IY+ +RPG+ A +F FFD ++Y + VGR ++N + + D Sbjct: 300 DSTASHEDALLRIYQRLRPGNPPQLEKAIELFKEKFFDVNRYRIGRVGRFRVNRKFDQDV 359 Query: 425 PDDVRHIRKEDIIAIIKILVDLRNGKG--TIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 PD +R EDII I+ ++ LR G +DDIDNLGNRR+R++ E+ + + R G L++ Sbjct: 360 PDTEMTLRPEDIINSIRYVMKLRTGDATAHVDDIDNLGNRRLRTIDELAQEELRKGFLKL 419 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 R+++ER+S D++ + P+ LIN K V +A+ FF +LSQ+ + N L+ +TH RRLS Sbjct: 420 RRTVQERMSLKDVEEMSPRSLINPKSVSAAIDFFFGRGELSQVVDQTNPLATLTHERRLS 479 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL+SSL+ FA+V+ YGF+ TPY Sbjct: 480 ALGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLSIFAKVDDYGFLITPY 539 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 RKV D KVT ++V+L A EE + YIA A++ + +D +E V CR + + +P +++ Sbjct: 540 RKVVDKKVTEEIVWLRADEESHVYIAPADTPVQDD-KMRDERVMCRHHNDFLWLPASQVN 598 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 +ID +P Q+V ++A LIPFLE+DD+NR LMG NMQRQ VPLL AE P VGTG+E VA++ Sbjct: 599 YIDVAPCQMVGVSAGLIPFLEHDDANRALMGSNMQRQGVPLLIAEPPLVGTGLEGPVAQN 658 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG + A+++G V VD I I L K+ N+ TC+NQ P+V Sbjct: 659 SGMVLRAEKSGKVTYVDGDCIEI------------DGKRTPLRKYTGLNERTCLNQTPVV 706 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 KVGD+V++ DI+ D + G+LALGRN+LVAFM W G+NFED++++SER+V EDV+TSI Sbjct: 707 KVGDKVKKGDILVDSAAVGDGELALGRNVLVAFMSWEGFNFEDAIILSERLVKEDVYTSI 766 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+EF+V R+TKLG EE TRDIPNVS++ L+++D+ G+I VG V PGDILVGK++PK Sbjct: 767 HIDEFDVEVRETKLGREEFTRDIPNVSDKALRHLDDDGVIHVGTRVEPGDILVGKVSPKA 826 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 ++ +TPEEKLL AIFG DV++ SL VPSGV G V+ F+R E Sbjct: 827 KTELTPEEKLLHAIFGRAGEDVKNESLEVPSGVEGIVIHTEKFSRRMSLSETERKKFE-T 885 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 ++ + +D + + L + G + + ++ Y S Sbjct: 886 DLKRVEESGNDLIAAAFKTFLTHFETALE--KKLQDDDGRDLGKLDDAKFLATYAESFLH 943 Query: 1023 QFAVQD---EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 +F D + + + + ++ D K+ ++ GD++P GVL++VKV+VA Sbjct: 944 RFETMDLRSPQKKADCKKAIKEFWGPVEEAIDDRDRKLNTMKRGDELPSGVLQMVKVYVA 1003 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR I GDKMAGRHGNKG++S++LP EDMPFL DGTPVDI+LNPLGVPSRMNVGQI ET Sbjct: 1004 QKRQISVGDKMAGRHGNKGVISKVLPVEDMPFLADGTPVDIILNPLGVPSRMNVGQILET 1063 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 HLGWA LG + K + D A I L Sbjct: 1064 HLGWAAAKLGFRAKCPVFDGPAEETIRELLKQA--------------------------- 1096 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 G E+ +L DG TGEPF++ TVGYIYMLKL Sbjct: 1097 -------------GLPEDGKAQLL--------------DGRTGEPFEQKTTVGYIYMLKL 1129 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DKV+AR+TG YSL+TQQPLGGK+ GGQR GEMEVW ++AYGAAY+LQE+LT+KS Sbjct: 1130 HHLVEDKVHARATGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKS 1189 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 DDV GRT++YES+V G +T E GTP SF VL E++ L L++ LE S Sbjct: 1190 DDVEGRTKIYESMVKGENTLEAGTPASFEVLNNEIRGLCLNMQLEKS 1236 >gi|87306545|ref|ZP_01088692.1| DNA-directed RNA polymerase beta chain [Blastopirellula marina DSM 3645] gi|87290724|gb|EAQ82611.1| DNA-directed RNA polymerase beta chain [Blastopirellula marina DSM 3645] Length = 1224 Score = 1148 bits (2969), Expect = 0.0, Method: Composition-based stats. Identities = 542/1349 (40%), Positives = 781/1349 (57%), Gaps = 135/1349 (10%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNE-GLQAAFKSVFPITAFSGAAMLEFVSYEFD 82 + PDL +Q SY FL + D R E G+++ + +FPI ++ G L++V YE Sbjct: 1 MSPPDLTTIQTHSYTKFLQEELDSDARDPEIGIESVLREIFPINSYDGTVQLDYVRYELG 60 Query: 83 PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDG 142 P++ +C LTY +P +I LRL + ++ E+ +Y+GD+P+M G Sbjct: 61 KPRYTPQECKQLRLTYGLPFRIWLRL------------NKEEPIEEEVYLGDMPVMLGGG 108 Query: 143 TFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDII 202 F+I G +R+VVSQLHRSPG+ F + S + L +CRIIP++G W++I KD Sbjct: 109 EFIINGAERVVVSQLHRSPGVDFVEEAETT--SDRRLPSCRIIPERGSWIEINITKKDSF 166 Query: 203 HVRIDRRRKVPVTSFLMAL--GMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAK 259 VRID+ K T+ L A+ + + ++ FY Sbjct: 167 TVRIDQSGKFAATTLLRAMSPELSDDASLIRAFYDTT----------------------- 203 Query: 260 VSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGE 319 + ++ G+ +T K + V + D G GE Sbjct: 204 -----------KVHVKDGRSIT----KIEGKIAVDDIVYPIDSDRG------------GE 236 Query: 320 IYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYR 379 I +EAG I + E I I + + V I NTL+ D ++ALL IY+ Sbjct: 237 IIVEAGQKISRNTAELICSVGITEE--IEVMDSPKIPIIFNTLIEDNTSSHEEALLRIYQ 294 Query: 380 VMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAI 439 +RPG+ A+++F+ F+D ++Y L VGR +MN +L ++ + + +R D+I Sbjct: 295 RLRPGNPPQLEKAKTLFDEKFYDDNRYRLGRVGRFRMNRKLGIEVNEGEQTLRPSDLINS 354 Query: 440 IKILVDLRNGKG--TIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDS 497 IK ++ + +G G DDID+LGNRR+R++ E+ ++ R G L++ R+++ER+S D + Sbjct: 355 IKYVMSILDGDGTARKDDIDHLGNRRLRTIDELACDELRKGFLKLRRTVQERMSLKDAED 414 Query: 498 VMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVE 557 + P++LIN K + +A+ FF +LSQ+ + N LS +TH RRLSALG GG+ R RAG E Sbjct: 415 MTPRNLINPKSISAAIEYFFGRGELSQVVDQTNPLSMLTHERRLSALGPGGLNRKRAGFE 474 Query: 558 MRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYL 617 +RDVH +HYGRICP ET EG NIGL+SSL ++ V+ YGF+ TPYR + DGK+ +++V+L Sbjct: 475 VRDVHISHYGRICPIETPEGTNIGLISSLAIYSAVDEYGFLITPYRVIRDGKIADEIVWL 534 Query: 618 SAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS 677 A EE + Y+A A++ D G +L+ R + LV + + +ID +P Q+V ++AS Sbjct: 535 RADEESDAYVAPADTPTDAKGQLLGDLIIARYRSDFDLVEPKTVQYIDVAPCQMVGVSAS 594 Query: 678 LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQ 737 LIPFLE+DD+NR LMG NMQRQAVPLL AE P V TG+E+ VA++S I AKRAG++E Sbjct: 595 LIPFLEHDDANRALMGSNMQRQAVPLLIAEPPIVCTGLETEVARNSSMMIRAKRAGVIEY 654 Query: 738 VDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADG 797 VDA RIVI++ EG D Y L KF N+ TC+NQRP++ VG EV ++ADG Sbjct: 655 VDAERIVIKTTEGRTD-------NYTLRKFVGLNERTCLNQRPIISVGQEVEVGTVLADG 707 Query: 798 PSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLG 857 +T G LALGRN+LV FM + GYN+ED++++SE +V +DV+TS+HIEEF+V R+TKLG Sbjct: 708 AATHNGQLALGRNVLVGFMSFDGYNYEDAIILSEELVKQDVYTSLHIEEFDVEIRETKLG 767 Query: 858 PEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIF 917 E+ TRDIPNVSE+ L+N+DE G++ VG V PGDILVGK++PK ++ +TPEEKLL AIF Sbjct: 768 REDFTRDIPNVSEKMLRNLDEGGVVQVGTFVKPGDILVGKVSPKSKTELTPEEKLLHAIF 827 Query: 918 GEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVI 977 G DV++ SL VPSG+ G V+ F R ++ + E+ E+ Sbjct: 828 GRAGEDVKNDSLEVPSGIEGIVIHTDKFARRMSLSDDERKAFEKRLKEVETEGNSKISEA 887 Query: 978 LDRNIYSRLMEILCGQNAVSG-PKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 I + G P + ++ ++ + + DE++Q+ E Sbjct: 888 FAAMIVEFERILGKTLTDEDGTPLTQDQDPKFIAEQAQQFRLKKIVEHLRSDERIQQIRE 947 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 + + ++ L+ R + ++ GD++ GVL++VKV++A KR I GDKMAGRHGN Sbjct: 948 AYATSWPLVEAALDVR-DRVLNSMKRGDELRSGVLQMVKVYIATKRCISVGDKMAGRHGN 1006 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG++++ILP EDMPFL DGTP+ I+LNPLGVPSRMNVGQI ETHLGWA LG + + + Sbjct: 1007 KGVIAKILPVEDMPFLPDGTPIQIMLNPLGVPSRMNVGQILETHLGWAGAKLGFQSITPV 1066 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 D + DI+ Sbjct: 1067 FDGASEEDINNCLEEAG------------------------------------------- 1083 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 L + L DG TGE + TVGYIYMLKL+H+V DKV+ARSTG YS Sbjct: 1084 ------LPRHG-----KIRLKDGRTGELMHQETTVGYIYMLKLHHLVDDKVHARSTGPYS 1132 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 L+TQQPLGGK+ GGQR GEMEVW ++AYGAAY+LQE+LT+KSDDV GRT++YE++V G Sbjct: 1133 LITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKIYEAMVKGE 1192 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLEN 1365 +T E GTP SF+VL E++ LGL++ LE Sbjct: 1193 NTLEAGTPASFDVLTNEIRGLGLNMQLEK 1221 >gi|307128566|ref|YP_003880596.1| DNA-directed RNA polymerase subunit beta [Candidatus Sulcia muelleri CARI] gi|306483028|gb|ADM89898.1| DNA-directed RNA polymerase subunit beta [Candidatus Sulcia muelleri CARI] Length = 1277 Score = 1146 bits (2964), Expect = 0.0, Method: Composition-based stats. Identities = 536/1364 (39%), Positives = 787/1364 (57%), Gaps = 122/1364 (8%) Query: 10 LGRVRK-FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF 68 ++K F + PD +E+Q S+++FL ++ + R NEGL AF FPI+ Sbjct: 4 KKEIKKINFASVKTKLKYPDFLEIQLKSFNNFLKIDSNFENRKNEGLYKAFIENFPISDA 63 Query: 69 SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +LEF+ Y DPP++ +++CL R LTY+V +K L+L + + Q Sbjct: 64 KNKFILEFIDYIIDPPRYSLEECLKRGLTYSVSIKARLKLYCTKSEIQNF-----ETIYQ 118 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 +Y+G P MT G+F+ G +R+VVSQL RSPG+ FD +G+ Y+ +IIP + Sbjct: 119 DVYLGTCPYMTPSGSFIFNGSERVVVSQLQRSPGVFFDQS---YHSNGQKFYSAKIIPFK 175 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ D ++++V I++ +K+PVT+ L A+G E +IL+ F + Sbjct: 176 GSWIEFSTDIHNVMYVFIEKNKKIPVTTLLRAIGFSKERDILNLFEITETIKINKKNYKK 235 Query: 248 PLSAADLMVGAKV-SSSLVDIDTGEQV-IESGKKLTSGLLKSLKEKGVKFLGITSDCLCG 305 L K+ +D D+GE + ++ K L + + K+ K + + Sbjct: 236 ILGRTLGERILKIWYEDYIDEDSGEIISLKKSKILLNRNIILNKKNINKIIDNNIKYISL 295 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 + + ++ + I+NT+ D Sbjct: 296 YKLKKTSIDF----------------------------------------SIIQNTIQID 315 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 +K+A+ IY++++ D A N FF KY L VGR ++N L LD P Sbjct: 316 PTNSKKEAIYYIYKILKNSDPIDEITAILFINKFFFSEYKYSLGEVGRYRLNKTLKLDFP 375 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 + + KED+I+IIK L+ L N K +DDID+L NRRV++VGE L QY +GL RM R Sbjct: 376 LTYKVLSKEDLISIIKNLIILNNSKKEVDDIDHLANRRVKTVGEQLYTQYVIGLARMSRI 435 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 I+E++S + + P LINA+ + S + FF +SQLSQ + N L+ +TH RRLS+LG Sbjct: 436 IREKMSIKENEVFSPIKLINARYLTSVINSFFGTSQLSQFMDQTNPLAEVTHKRRLSSLG 495 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG++R RAG E+RDV+ +HYGR+CP ET EG NIGL+SSL FAR+N GFIETPY KV Sbjct: 496 PGGLSRDRAGFEVRDVNYSHYGRLCPIETPEGPNIGLISSLCVFARINDMGFIETPYLKV 555 Query: 606 CDGKV--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 GKV N +YLSA +E + IAQAN+ L+ + + + R + +V +K+++ Sbjct: 556 NKGKVILKNKPIYLSAEQEYGKIIAQANAILNYNTGVLKNQIIVRANADFPMVNSKKVNY 615 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 ID S Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLLK + P VGTG+E +A+ + Sbjct: 616 IDISTNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLKPQVPIVGTGLEKKLAQDA 675 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 I A++ GI+E VD+ +I I+ + L + ++L+KF+++NQNTC+N +P Sbjct: 676 RILIHAEKDGIIESVDSNKIRIKYFFSEKKKLLSFEEEIKSFKLIKFRKTNQNTCINIKP 735 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +VK G V + ++ +G +T G+LALGRN+ VAFMP+ GYNFED+++ISE++V ED+FT Sbjct: 736 IVKKGMNVTKGQVLCEGYATKNGELALGRNIKVAFMPFKGYNFEDAIVISEKVVREDLFT 795 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHI+E+ + R+TKLG EE++ DIPN+SE L+ +D+ GII +G V PGD+L+GK TP Sbjct: 796 SIHIDEYSIEVRETKLGMEELSNDIPNMSERQLQKLDQNGIIQIGHYVKPGDLLIGKTTP 855 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 K + T EEKLL+AIFGEKA+ ++D+SL+ S + G V+D +I+++ KN+ Sbjct: 856 KKKKNPTSEEKLLKAIFGEKAISIKDSSLKANSSLFGVVIDTKIYSKKIKMKNKELEKEN 915 Query: 961 REQIELLARDKDD----EQVILDRNIYSRLMEILCGQ-----NAVSGPKGFKKSTVLSSD 1011 + ++ + DD + L + ++L +L G+ K K +++ Sbjct: 916 LKLEKMKLKKIDDKFTKKFKKLKNLLINKLNTVLEGEISEEVFDSFFKKKISKGQIINLK 975 Query: 1012 LISEYP--RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 +++ R+ +++ V + Y K L+ + K I GD++P G Sbjct: 976 ILNSIKNYRNIISNRWIKNNYKNYLVLKILKNYFFLKKKLKIKLILKKNNILIGDELPTG 1035 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 ++++ KVF+A KR ++ GDKM+GRHGNKGIV+RI+ EDMP+L+DGTPVD+VLNPLGVPS Sbjct: 1036 IIKLAKVFIAKKRKLKVGDKMSGRHGNKGIVARIVREEDMPYLEDGTPVDLVLNPLGVPS 1095 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYD 1189 RMN+GQI+ET LGWA L + + I D + +IS Sbjct: 1096 RMNIGQIYETILGWAGEKLKRNFSTPIFDGASLEEISKYTDKANL--------------- 1140 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 P F G + L+DG TGE FD+PV Sbjct: 1141 -------------------PRF--------------------GSTYLFDGETGEKFDQPV 1161 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TVG IYMLKLNHMV DK++ARS G YSL+TQQPLGGKS GGQR GEMEVW ++++GAA Sbjct: 1162 TVGVIYMLKLNHMVDDKMHARSIGPYSLITQQPLGGKSQFGGQRFGEMEVWALESFGAAN 1221 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 +L+E+LTIKSDD++GRTR YE+IV G E G PESFNVL+ E Sbjct: 1222 ILREILTIKSDDIIGRTRTYEAIVQGAKIPEPGIPESFNVLINE 1265 >gi|91200660|emb|CAJ73710.1| strongly similar to DNA-directed RNA polymerase, beta chain [Candidatus Kuenenia stuttgartiensis] Length = 1230 Score = 1145 bits (2963), Expect = 0.0, Method: Composition-based stats. Identities = 541/1362 (39%), Positives = 796/1362 (58%), Gaps = 150/1362 (11%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 + + K E+I++ +L ++Q +Y FL ++I +R N G++A + +FP++ + G L Sbjct: 4 RNYSKVDEVIELQNLTQIQTKAYMDFLQLDIPASKRKNVGIEAILREIFPVSNYDGNITL 63 Query: 75 EFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGD 134 +V YE P++ D+C LTY P ++ LRL D DE E+ +Y+G+ Sbjct: 64 NYVKYELGKPRYSQDECRQLRLTYGRPFRVWLRL---DKDEP---------IEEEVYLGE 111 Query: 135 LPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDI 194 +P++ G F+I G +R++V+QLHRSPG+ F + + K L++CRIIP++G W+++ Sbjct: 112 IPVVIGGGEFIINGTERVIVAQLHRSPGVDFIEEF----YAEKRLHSCRIIPERGSWIEL 167 Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 E KD++ VRID+ K+P T FL AL Y+ D Sbjct: 168 EVGKKDVLTVRIDQSGKLPATCFLRAL-------------SAEYANDEDII--------- 205 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 L ++ + + + L G + AE +VN Sbjct: 206 ----------------------------RLFHEVETVKIADYDVAAK-LRGRFTAEQVVN 236 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 ETGEI ++AG + +++ I EI+ + ++ + I N+L +D K +DAL Sbjct: 237 PETGEILLDAGRQFSDSTVKAITDLEIKKVDVIK---KVEDNLILNSLESDFTKSHEDAL 293 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 L IY RPG+ A +F FFD +Y L VGR ++N ++ D ++KE Sbjct: 294 LKIYARFRPGNPQQVEKARQLFYDKFFDEKRYRLGPVGRFRLNRKMGHDVDSSKMTLQKE 353 Query: 435 DIIAIIKILVDLRNGK--GTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 D + I+ L+ LR G +IDDIDNLGNRR+R++ E++ + R G L++ R+I+ER+S Sbjct: 354 DFVEAIRYLMKLRKGTPGASIDDIDNLGNRRLRTIDELVGEELRKGFLKLRRTIQERLSV 413 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 + + + P+ L+N+K + SA+ FF S+LSQ+ + N L+++TH RRLSALG GG+ R Sbjct: 414 KETEQLTPRSLVNSKTIFSAIDYFFSRSELSQVLDQTNPLAQLTHERRLSALGPGGLNRK 473 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVH +HYGR+CP ET EG NIGL++SL+ +A ++ YGF+ TPYR + GK + Sbjct: 474 RAGFEVRDVHVSHYGRVCPIETPEGTNIGLIASLSIYATIDEYGFLITPYRLIEKGKPSK 533 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 +++YL A EEE R IA A+ + + + V CR G+ + ++++D SPKQ+V Sbjct: 534 NIIYLRADEEEGRLIAPADILISTKDTLGKTEVLCRHDGDFKHTAFKDVNYMDVSPKQMV 593 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 ++ASLIPFLE+ D+NR LMG NMQRQAVPLLK E P + TGME VVAK+S + +++ Sbjct: 594 GVSASLIPFLEHSDANRALMGSNMQRQAVPLLKTEPPIIATGMERVVAKNSSMTVQSEKN 653 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 G V +V + IVI + E IY+L KF N+ TC+NQ+P+V G ++++ + Sbjct: 654 GTVTKVSSNEIVIDNNE-----------IYKLRKFVGLNEGTCLNQKPIVTEGQKIKKGE 702 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 +IADG +T G+L+LG+N+LVAFM W GYNFED+M+ISE ++ +D FTSIH +EFEV R Sbjct: 703 VIADGAATHNGELSLGKNVLVAFMTWDGYNFEDAMVISEALLKDDRFTSIHRDEFEVEIR 762 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 +TKLG EE TRDIPNVSE+ L+N+DE GII VG +V PGDILVGKI PK S ++PEEKL Sbjct: 763 ETKLGREEFTRDIPNVSEKALRNLDENGIIRVGTKVKPGDILVGKIAPKSRSELSPEEKL 822 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI-------SVEREQIE 965 L AIFG DV++ SL VPSG+ G +++ ++F+R E+ +E + E Sbjct: 823 LHAIFGRAGEDVKNESLEVPSGMEGIIINTQVFSRKSYISEEKRQKILGEVSEIESKYNE 882 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFA 1025 +A++ ++ I L++I GQ + +K+ +++ A Sbjct: 883 TIAKEFAKMLKAINAEIEEALVDIQTGQVYKTERAMSEKT------ILAMEDHFNIENIA 936 Query: 1026 VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 +K + + +Y+ L++ KI +++ GD++P GVL + KV +A KR + Sbjct: 937 FSSKKKKELALEISQEYKRKMEELKEERDGKINQLKRGDELPTGVLELAKVSIATKRKLS 996 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG++S+ILP EDMPFL DGT V+++LNPLGVPSRMNVGQI ETHLGWA Sbjct: 997 VGDKMAGRHGNKGVISKILPEEDMPFLADGTRVEMLLNPLGVPSRMNVGQILETHLGWAA 1056 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 LG + + I + +I + Sbjct: 1057 KKLGFRAITPIFEGALEEEIRETLKEAKLP------------------------------ 1086 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSD 1265 E ++L G TGE F + V VGY+YMLKL+H+V + Sbjct: 1087 -----------EDGKAVL------YDG-------RTGESFGQKVAVGYMYMLKLHHLVDE 1122 Query: 1266 KVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGR 1325 KV+AR+TG YSL+TQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDV GR Sbjct: 1123 KVHARATGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAHNLQELLTVKSDDVEGR 1182 Query: 1326 TRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 T++YES+V G +T E GTP SF VL E+ LGL++ LE + Sbjct: 1183 TKIYESMVKGENTLEAGTPASFEVLSNEIAGLGLNLKLEKKK 1224 >gi|323155567|gb|EFZ41744.1| DNA-directed RNA polymerase, beta subunit [Escherichia coli EPECa14] Length = 951 Score = 1145 bits (2962), Expect = 0.0, Method: Composition-based stats. Identities = 556/964 (57%), Positives = 728/964 (75%), Gaps = 13/964 (1%) Query: 403 SDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNR 462 D+YDLS VGR+K N L + + + K+DII ++K L+D+RNGKG +DDID+LGNR Sbjct: 1 EDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR 60 Query: 463 RVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQL 522 R+RSVGEM +NQ+R+GL+R+ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQL Sbjct: 61 RIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL 120 Query: 523 SQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGL 582 SQ + N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL Sbjct: 121 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 180 Query: 583 VSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE 642 ++SL+ +A+ N YGF+ETPYRKV DG VT+++ YLSA+EE N IAQANS+LDE+G F E Sbjct: 181 INSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE 240 Query: 643 ELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP 702 +LV CR GE L R+++D++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP Sbjct: 241 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 300 Query: 703 LLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 L+A+ P VGTGME VA SG VAKR G+V+ VDA RIVI+ E ++ P +G+DIY Sbjct: 301 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 360 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 L K+ RSNQNTC+NQ P V +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYN Sbjct: 361 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 420 Query: 823 FEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGII 882 FEDS+L+SER+V ED FT+IHI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ Sbjct: 421 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 480 Query: 883 CVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDV 942 +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV Sbjct: 481 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 540 Query: 943 RIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 ++F R G++K++R++ +E Q++ +D +E IL+ ++SR+ +L Sbjct: 541 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV------- 593 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 ++ + + PR +W + + DE+ Q +E L QY+ K E + + K KI Sbjct: 594 ------EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 647 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GDD+ PGVL++VKV++A+KR IQ GDKMAGRHGNKG++S+I P EDMP+ ++GTPVDIVL Sbjct: 648 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 707 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182 NPLGVPSRMN+GQI ETHLG A G+G KI +++ + + + Sbjct: 708 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 767 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242 +S + D+ V+R+AE + G+P++TPVFDGA E I +L++ DL SGQ LYDG TG Sbjct: 768 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 827 Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302 E F+RPVTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW + Sbjct: 828 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 887 Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +AYGAAY LQEMLT+KSDDV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+ Sbjct: 888 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 947 Query: 1363 LENS 1366 LE+ Sbjct: 948 LEDE 951 >gi|256370637|ref|YP_003108462.1| DNA-directed RNA polymerase subunit beta [Candidatus Sulcia muelleri SMDSEM] gi|256009429|gb|ACU52789.1| DNA-directed RNA polymerase beta subunit [Candidatus Sulcia muelleri SMDSEM] Length = 1317 Score = 1134 bits (2932), Expect = 0.0, Method: Composition-based stats. Identities = 537/1365 (39%), Positives = 779/1365 (57%), Gaps = 119/1365 (8%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F D +E+Q S+ F ++ R EGL AF FPI+ Sbjct: 50 ERINFSLVKTNSYYSDFLEIQIKSFKKFFQLDSTYMNRKKEGLYKAFLEYFPISDSKSQF 109 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +++CL R LTY+V +K+ L+ + + T + Q IY+ Sbjct: 110 ILEFIDYLIDPPRYSLEECLQRGLTYSVSIKVRLKFYCTNPEYETF-----ETVYQDIYI 164 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G P MT G+F+ G +R++VSQL +SPGI F + +GK L ++IP +G+WM Sbjct: 165 GSCPYMTPTGSFIFNGSERVIVSQLQKSPGIFFGQ---YSHPNGKNLAYAKLIPSKGVWM 221 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D +++ V ID+ +K P+T+ L A+G + +IL+ F + L Sbjct: 222 EFSIDINNVLSVSIDQSKKFPITTLLRAIGYSKDQDILNIFELADKFILTKKNSNQLLGK 281 Query: 252 ADLMVGAKVSS-SLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310 K S +D TGE + Sbjct: 282 YMAANILKTSFEDWIDEKTGELI------------------------------------- 304 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 + E EI ++ +++ ++++ ++++I LY + I NTL D + Sbjct: 305 ---SLEKNEILLKRNIFLNKNHIKKLLQCQMKEI-YLYKKKNFYYSIIHNTLQKDPTNYK 360 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+AL IY+ ++ D + S ++ + N L F Y L VGR K+N L +D P Sbjct: 361 KEALDFIYKQVKNCDPPSHSSSKELMNKLIFSEINYSLGEVGRYKLNKTLKVDIPLTYNI 420 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KED+I+II+ L++L N I+DID+L NRRV++VGE L QY LG+ ++ R IKE+I Sbjct: 421 LSKEDLISIIEHLIELNNSTKEIEDIDHLSNRRVKTVGEQLYTQYVLGIAKIARIIKEKI 480 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + S+ P +LI AK + S + FF ++ LSQ + N L+ ITH RRLS+LGQGG+ Sbjct: 481 NLKKKISITPLELIKAKTLTSVINTFFGTNPLSQFMDQTNPLAEITHKRRLSSLGQGGIL 540 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDV+ +HYGR+CP ET EG NIGL+SSL FA++N+ GFIETPY +V DGKV Sbjct: 541 RERAGFEVRDVNSSHYGRLCPIETPEGPNIGLISSLCVFAKINSMGFIETPYLRVKDGKV 600 Query: 611 T--NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 +YLSA +E + IAQAN+ L+ + + R + LV +K+D+ID S Sbjct: 601 LLKKKPLYLSAEQETGKLIAQANAILNHKTGELKPKLIVREDSDFTLVNYKKVDYIDLST 660 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 Q+ SI+ASLIPFLE+DD+NR LMG NM RQAVPLL + P VGTG+E +A S I Sbjct: 661 NQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLNPQVPIVGTGLEKHLAYDSRMLIY 720 Query: 729 AKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ GIV+ VDA I I+ L + Y+L+KF+++NQNTC+N RP+VK G Sbjct: 721 AEADGIVDSVDANVIKIKYFMSETEKLLSFEKRIKKYKLIKFRKTNQNTCINLRPIVKKG 780 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 +V +N ++ +G +T G+LALG N+ VAFMP+ GYNFED+++ISE+++ ED FTSIHI+ Sbjct: 781 MKVVKNQVLCEGYATKNGELALGINLKVAFMPFKGYNFEDAIVISEKVLREDWFTSIHID 840 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ + RDT+ G EE+T D+PN +EE LKN+DE G+I +G++V PGDI++GK+TPK + Sbjct: 841 EYSIEVRDTQFGMEELTNDLPNFNEEDLKNLDENGMIRIGSKVKPGDIIIGKLTPKIDKN 900 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +PE+KLL+AIFGE+AV++++ SL+ + G V+D ++++R E + ++E Sbjct: 901 PSPEKKLLKAIFGERAVNLKNVSLKADPSLFGVVIDKKLYSRSENT--EEYKIKKHLKLE 958 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQ-----NAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 L L + +L IL G S + K ++ ++ + Sbjct: 959 KLNFSFKKNLDKLKDLLIKKLNSILEGTISEGVRNSSNKEIILKGKKITLKVLKKIDNFS 1018 Query: 1021 --WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 V+D + V L + K+ L+ + K K +I GD++PPGV ++ KVF+ Sbjct: 1019 NIISPNWVKDNLKNKLVLKLINNFNLKKNQLKIKLKKKQNRILIGDELPPGVFKLAKVFI 1078 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR ++ GDKM+GRHGNKGIV+ IL EDMP+L+DGTP+D+VLNPLGVPSRMN+GQI+E Sbjct: 1079 AKKRKLKVGDKMSGRHGNKGIVAIILKEEDMPYLEDGTPIDLVLNPLGVPSRMNIGQIYE 1138 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 T LGWA LG + I D + +IS Sbjct: 1139 TILGWAGEKLGINFSTPIFDGASLDEISKYTDKANL------------------------ 1174 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 P F G + L+DG TGE F++PVTVG IYMLK Sbjct: 1175 ----------PRF--------------------GNTYLFDGETGEKFEQPVTVGVIYMLK 1204 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 LNHMV DK++ARS G YSL+TQQPLGGKS GGQR GEMEVW ++++GAA +L+E++TIK Sbjct: 1205 LNHMVDDKLHARSIGPYSLITQQPLGGKSQFGGQRFGEMEVWALESFGAANILREIITIK 1264 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 SDDV+GR +E+IV G G PESFNVL+ E++ LGL++ L Sbjct: 1265 SDDVIGRANTFEAIVKGKKFPIPGVPESFNVLISELKGLGLNLSL 1309 >gi|213161404|ref|ZP_03347114.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 920 Score = 1124 bits (2906), Expect = 0.0, Method: Composition-based stats. Identities = 543/933 (58%), Positives = 710/933 (76%), Gaps = 13/933 (1%) Query: 434 EDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSV 493 +DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ER++KER+S Sbjct: 1 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 60 Query: 494 DIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARAR 553 D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+SALG GG+ R R Sbjct: 61 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 120 Query: 554 AGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTND 613 AG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPYR+V DG VT++ Sbjct: 121 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVTDE 180 Query: 614 VVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVS 673 + YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D++D S +QVVS Sbjct: 181 IHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 240 Query: 674 IAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAG 733 + ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA SG VAKR G Sbjct: 241 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 300 Query: 734 IVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDI 793 V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V +G+ V R D+ Sbjct: 301 TVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDV 360 Query: 794 IADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARD 853 +ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+IHI+E ++RD Sbjct: 361 LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 420 Query: 854 TKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLL 913 TKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLL Sbjct: 421 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 480 Query: 914 RAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDD 973 RAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Q++ +D + Sbjct: 481 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE 540 Query: 974 EQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQR 1033 E IL+ ++SR+ +L ++ + + PR +W + + DE+ Q Sbjct: 541 ELQILEAGLFSRIRAVLVSGGV-------------EAEKLDKLPRDRWLELGLTDEEKQN 587 Query: 1034 NVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGR 1093 +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR IQ GDKMAGR Sbjct: 588 QLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR 647 Query: 1094 HGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIK 1153 HGNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG A G+G KI Sbjct: 648 HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN 707 Query: 1154 SLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDG 1213 +++ + + + +S + DD VLR+AE + G+P++TPVFDG Sbjct: 708 AMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDG 767 Query: 1214 ADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTG 1273 A E I +L++ DL SGQ L+DG TGE F+RPVTVGY+YMLKLNH+V DK++ARSTG Sbjct: 768 AKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG 827 Query: 1274 SYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIV 1333 SYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV Sbjct: 828 SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV 887 Query: 1334 AGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 888 DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 920 >gi|153869212|ref|ZP_01998874.1| DNA-directed RNA polymerase, beta subunit [Beggiatoa sp. PS] gi|152074248|gb|EDN71124.1| DNA-directed RNA polymerase, beta subunit [Beggiatoa sp. PS] Length = 1118 Score = 1119 bits (2895), Expect = 0.0, Method: Composition-based stats. Identities = 565/1117 (50%), Positives = 759/1117 (67%), Gaps = 114/1117 (10%) Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 + D +A ++IYR+MRPG+ T AES+FN LFF ++YDLS VGR+K N R+ Sbjct: 1 MRIDSTTTTLEAQIEIYRMMRPGEPPTPEAAESLFNNLFFSEERYDLSAVGRMKFNRRIG 60 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + +DI+ +++ L+++ NG G +DDID+LGNRR+RSVGEM +NQ+R+GL+R Sbjct: 61 RDEITGPGILTVDDILDVLRTLINIPNGIGGVDDIDHLGNRRIRSVGEMTENQFRIGLVR 120 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER++KER+S +I++V+PQ+LINAKPV +++ EFF SSQLSQ + N LS +TH RR+ Sbjct: 121 VERAVKERLSVAEIENVVPQELINAKPVSASIREFFGSSQLSQFMDQNNPLSEVTHKRRI 180 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +AR N YGF+ETP Sbjct: 181 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETP 240 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 R+V DG+VT+ V YLSA+EE IAQAN++LDE+G F +++V R E ++ ++K+ Sbjct: 241 CRRVEDGRVTDKVEYLSAIEEGGFVIAQANANLDENGYFKDDMVAARHENEFTVISKDKV 300 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 +++D SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME +VA Sbjct: 301 NYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAQKPLVGTGMERIVAI 360 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPST--------------SGVDIYRLMKF 767 SG +VA+R GI++ VDA RIV+R + ++ SGVDIY L K+ Sbjct: 361 DSGVTVVAERGGIIDSVDAARIVVRINDDEVLKEGEDNSITPKFGTLLSSGVDIYNLTKY 420 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQNTC+NQ+PLVK D ++R D++ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDS+ Sbjct: 421 VRSNQNTCINQKPLVKPDDLIKRGDVLADGPSTDLGELALGQNLFVAFMPWNGYNFEDSI 480 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 LISER+V E+ FTSIHI E +ARDTKLG EEIT DIPNVSE LKN+DE GII +GA+ Sbjct: 481 LISERVVEEERFTSIHIVELSCLARDTKLGAEEITADIPNVSESALKNLDEAGIISIGAQ 540 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V PGDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVPSG GTV+DV++F R Sbjct: 541 VMPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGTMGTVIDVQVFTR 600 Query: 948 HGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS------GPKG 1001 G+DK R+ +E+ ++ + +D D IL+ ++Y R+ ++L G + G +G Sbjct: 601 DGVDKGARAGRIEQAELNRVKKDLQDTLRILEHDVYLRVEKLLVGNKVTNSSNGWEGWEG 660 Query: 1002 FKK--------------------------------STVLSSDLISEYPRSQWWQFAVQDE 1029 KK +T+++S+++ E P +W++F+++D+ Sbjct: 661 VKKLLVGNKVTNSSKDEDGIETNTIITSRSDDIETNTIITSEILGE-PSDKWFKFSLEDK 719 Query: 1030 KVQRNVE----------------------------------------------------- 1036 K Q +E Sbjct: 720 KSQAQLESFAALKALHDLHQVEEDEKSQAQLESFKPALKALHDLPRTKLFELRVEDEKIQ 779 Query: 1037 SLKVQYETSKSILEDR----FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + R ++ K +K+ GD++ PGVL++VKV++A+KR IQ GDKMAG Sbjct: 780 AQIESFAQQLKDQRQRADALYEEKRQKLISGDELAPGVLKMVKVYLAIKRTIQPGDKMAG 839 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG+VS I+P EDMP+ KDG PVD+VLNPLGVPSRMN+GQ+ ETHLGWA LG++I Sbjct: 840 RHGNKGVVSMIVPVEDMPYTKDGRPVDLVLNPLGVPSRMNIGQVLETHLGWAAKALGEQI 899 Query: 1153 ----KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVST 1208 K + I LRS+L K+ E ++ ++ +L +A+ GVP++T Sbjct: 900 EQKLKIINKSKIIAQSIEELRSYLTKIYNVSGKPEDLTVLNNAEILELAKNLSDGVPMAT 959 Query: 1209 PVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVY 1268 VFDGA E I ML +A L +GQ+ LYDG TGE F R +TVGY+YMLKLNH+V DK++ Sbjct: 960 QVFDGASESEIKMMLELAGLPTNGQTTLYDGRTGEAFSRQITVGYMYMLKLNHLVDDKMH 1019 Query: 1269 ARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRV 1328 ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQEMLT+KSDDV GRT++ Sbjct: 1020 ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTQM 1079 Query: 1329 YESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 Y++IV G+ E G PESFNVLVKE+++LG+ I+LE Sbjct: 1080 YKNIVDGDHRMEAGMPESFNVLVKEIRSLGIDIELEQ 1116 >gi|68171621|ref|ZP_00544989.1| DNA-directed RNA polymerase, beta subunit [Ehrlichia chaffeensis str. Sapulpa] gi|67998958|gb|EAM85641.1| DNA-directed RNA polymerase, beta subunit [Ehrlichia chaffeensis str. Sapulpa] Length = 1150 Score = 1115 bits (2884), Expect = 0.0, Method: Composition-based stats. Identities = 568/1143 (49%), Positives = 798/1143 (69%), Gaps = 27/1143 (2%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + K+ +I D + DLI++Q+ SY+ F+ ++ + G++ F+S+FPI G A Sbjct: 20 RLSYAKSIDIKDSLTDLIKIQRDSYNAFIGID----QNTESGIKNIFQSMFPIQDLLGRA 75 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV------------DEFTGAK 120 +LEFVSY P++D +C+ R +T++VP++I LR IV+ V DE T K Sbjct: 76 VLEFVSYSIGEPQYDEYECIKRGITFSVPIRIVLRFIVWKVQEVSFKEVKYVVDEETSEK 135 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIK IKEQ + +GDLP MT GTF+I GI+R++VSQ+HRSPG+ FD DKG+ SGKL+Y Sbjct: 136 SIKYIKEQEVSIGDLPTMTSHGTFIINGIERVIVSQMHRSPGVFFDSDKGKTYSSGKLIY 195 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 + RIIP +G W+D EFD KDI++ RIDR+RK+PV+ L ALG+ + +IL TFY KI Y + Sbjct: 196 SARIIPYRGSWLDFEFDIKDILYFRIDRKRKLPVSLLLRALGLSNNDILDTFYDKIRYVK 255 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 W P A D G ++S L+D D G ++++ ++T + + L G+ + Sbjct: 256 SEKGWVVPFVA-DRFRGVRLSHDLMDSD-GNVLVKANTRITLRMARKLANDGLTKYLVPF 313 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + + GL++A D+++ + I AG+ I + + ++ I +I +L +D + YI N Sbjct: 314 NEIQGLFIANDLLDSTGNALIISAGENITSEHINKLELFNIEEIFVLNIDFLTVGPYILN 373 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TL DKN +DAL +IY+V+R G+ + ++ F+ LFF+ ++YDLSTVGR+K+N L Sbjct: 374 TLFLDKNVSYEDALFEIYKVLRSGESPSLDTIKAFFDGLFFEKERYDLSTVGRIKLNDHL 433 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 L+ +D+ + K+DII +IK LV LR+G+G++DDID+LGNRRVRSVGE ++NQ+R+G+L Sbjct: 434 GLNVSEDITVLTKDDIIHVIKKLVLLRDGEGSVDDIDHLGNRRVRSVGEFIENQFRIGIL 493 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER I + +SSV+ D+ MP D +N K + + + +FF SSQLSQ + N LS +TH RR Sbjct: 494 RLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRR 553 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL+SSL + R+N +GFIE+ Sbjct: 554 LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYGRINKHGFIES 613 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKV G VT+ V YL AM+E N YIA A+++LDE+ F +++++CR G ++V RE+ Sbjct: 614 PYRKVDKGVVTDKVEYLLAMQESNYYIADASATLDENNQFVDDMLYCRHDGNFVMVKREE 673 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D+ID SPKQ+VS+AASLIPFLEN+D+NR LMG NMQRQAVPLLKA+AP +GTGMES+VA Sbjct: 674 VDYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKADAPLIGTGMESIVA 733 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG ++AKR GIV +VD + IVIR+ + + + GVDIY L KFQRSN NTC+NQRP Sbjct: 734 AGSGTVVLAKRGGIVHRVDGLYIVIRAFDQEKNEY-LGVDIYNLRKFQRSNHNTCINQRP 792 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVK GD V+ ND+IADG + D G+LALG+N+LVAFM W GYNFEDS++IS +V +DVFT Sbjct: 793 LVKPGDYVKANDVIADGSAIDQGELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKDVFT 852 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFE + RDT LGPE+I R +P+++E+ L ++D+ GI+ VGAEV+ GDILVGK+TP Sbjct: 853 SIHIEEFECVVRDTTLGPEKIMRSVPDINEDSLSHLDDVGIVNVGAEVSAGDILVGKVTP 912 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 + + PE KLL IFGEK D D+SL +P V GTVVDV +F R G+++N+RS+ ++ Sbjct: 913 RPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPLDVEGTVVDVHVFVRRGVEENDRSLLIK 972 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 + +I +++D E ++ Y L +L G + + D ++ P+ + Sbjct: 973 QNEINGFIKERDYEIDVVSEYFYDELKRVLVSS-------GVQYNNQNIDDYLASIPKKE 1025 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 WW + DE + V+ LK ++++ +F KI+K+ +G D+P GVL +VKVFVA+ Sbjct: 1026 WWDINLSDEAMLLQVKDLKEKFDSMIQNAHSKFDQKIDKLNYGYDLPQGVLCIVKVFVAV 1085 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 K +Q GDKMAGRHGNKG++SRI+P EDMP+L+DGTPVDI+LN LGVPSRMNVGQI ETH Sbjct: 1086 KHNLQPGDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGVPSRMNVGQILETH 1145 Query: 1141 LGW 1143 LGW Sbjct: 1146 LGW 1148 >gi|269962521|ref|ZP_06176869.1| DNA-directed RNA polymerase beta subunit [Vibrio harveyi 1DA3] gi|269832716|gb|EEZ86827.1| DNA-directed RNA polymerase beta subunit [Vibrio harveyi 1DA3] Length = 914 Score = 1100 bits (2846), Expect = 0.0, Method: Composition-based stats. Identities = 536/930 (57%), Positives = 703/930 (75%), Gaps = 18/930 (1%) Query: 440 IKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVM 499 +K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ER++KER+S D+D++M Sbjct: 1 MKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDAIM 60 Query: 500 PQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMR 559 PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+SALG GG+ R RAG E+R Sbjct: 61 PQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVR 120 Query: 560 DVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSA 619 DVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPYR+V DG VT++V YLSA Sbjct: 121 DVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGVVTDEVDYLSA 180 Query: 620 MEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLI 679 +EE IAQAN++L E+G F +EL+ R GE L PRE ++D + QVVSIAASLI Sbjct: 181 IEEGQFVIAQANAALTEEGGFADELITARQKGESGLHPREHAQYMDVATNQVVSIAASLI 240 Query: 680 PFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVD 739 PFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA SG VAKR G+++ VD Sbjct: 241 PFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVDSGVTAVAKRGGVIQSVD 300 Query: 740 AIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPS 799 A RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V G+ V R D++ADGPS Sbjct: 301 ASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVSRGDVLADGPS 360 Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPE 859 TDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+IHI+E +ARDTKLG E Sbjct: 361 TDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELTCVARDTKLGSE 420 Query: 860 EITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGE 919 EIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGE Sbjct: 421 EITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGE 480 Query: 920 KAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILD 979 KA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Q++ +D +E IL+ Sbjct: 481 KASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILE 540 Query: 980 RNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLK 1039 + +R+ +L S + R +W + ++D+ +Q +E L Sbjct: 541 GGLLNRVRAVLIDGG-------------YSEAKLDTTDRKKWLELTLEDDALQSQLEQLA 587 Query: 1040 VQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGI 1099 Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR IQ GDKMAGRHGNKG+ Sbjct: 588 EQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 647 Query: 1100 VSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY 1159 +S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG A G+G KI ++ Sbjct: 648 ISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMV--- 704 Query: 1160 KANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEE 1217 K +++ R FL+KV G I+ DD V + + + G+P++TPVFDGA E Sbjct: 705 KEQQELAKFREFLQKVYDLGETRQKVDIASLSDDEVRTLIKNLRGGLPIATPVFDGAPEA 764 Query: 1218 AINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSL 1277 +I ++L++ADL ESGQ L+DG TG+ F+RPVTVGY+YMLKLNH+V DK++ARSTGSYSL Sbjct: 765 SIKALLKLADLPESGQLKLFDGRTGDQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 824 Query: 1278 VTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGND 1337 VTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV GN Sbjct: 825 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 884 Query: 1338 TFETGTPESFNVLVKEMQALGLSIDLENSR 1367 + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 885 SMEPGMPESFNVLLKEIRSLGINIELEDEE 914 >gi|189424403|ref|YP_001951580.1| DNA-directed RNA polymerase subunit beta [Geobacter lovleyi SZ] gi|226699410|sp|B3E7S8|RPOB_GEOLS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|189420662|gb|ACD95060.1| DNA-directed RNA polymerase, beta subunit [Geobacter lovleyi SZ] Length = 1497 Score = 1100 bits (2844), Expect = 0.0, Method: Composition-based stats. Identities = 541/990 (54%), Positives = 728/990 (73%), Gaps = 12/990 (1%) Query: 386 VSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVD 445 +F + +D ++ + + R +M L + D V + DI+ I++ L++ Sbjct: 513 PESFIKLMDLIEQGGYDENRRRIEGLRRNRM--LLEVAYGDSVECCNRNDILEIVRYLIE 570 Query: 446 LRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLIN 505 L+NG+G IDDID+LGNRRVR+VGE+L+NQYR+GL+RMER+IKER+S +++++MP DLIN Sbjct: 571 LKNGRGAIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSLQEVENLMPHDLIN 630 Query: 506 AKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTH 565 +KPV + V EFF SSQLSQ + N LS +TH RRLSALG GG+ R RAG E+RDVHPTH Sbjct: 631 SKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTH 690 Query: 566 YGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENR 625 YGR+CP ET EG NIGL++SL+++AR+N +GF+ETPYR V +G+VT++V + SA+EEE Sbjct: 691 YGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRLVREGQVTSEVKFFSALEEEGH 750 Query: 626 YIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLEND 685 IAQAN+ +D+DG F E V R +GE +LV R++I+ +D +PKQ+VS+AA+LIPFLEND Sbjct: 751 AIAQANALVDQDGRFINEYVSARKSGEFVLVQRDEIELMDVAPKQLVSVAAALIPFLEND 810 Query: 686 DSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVI 745 D+NR LMG NMQRQAVPLL+A++P VGTGME +VAK SG +++A+ G+V+ VDA RIVI Sbjct: 811 DANRALMGSNMQRQAVPLLRADSPLVGTGMERIVAKDSGVSVIARHNGVVDAVDAGRIVI 870 Query: 746 RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDL 805 + E + D + +GVDIY L+KF RSNQNTC+NQ+P+VKVGD+V+R D+IADGPSTD+G+L Sbjct: 871 KIDEEEYDETGTGVDIYNLVKFSRSNQNTCINQKPVVKVGDKVKRGDVIADGPSTDMGEL 930 Query: 806 ALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDI 865 ALG+N++VAFMPW GYNFEDS+L+SER+ +D +TSIHIEEFE +ARDTKLG EEIT DI Sbjct: 931 ALGQNIIVAFMPWGGYNFEDSILVSERLTKDDRYTSIHIEEFECVARDTKLGKEEITADI 990 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 PN+ EE LK++DE GII +GAEV PGDILVGKITPKGE+ ++PEEKLLRAIFGEKA DVR Sbjct: 991 PNLGEEALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVR 1050 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSR 985 DTSL +P GV GTV+ ++F+R G DK+ R+ +E+ + E L +D+ DE I+ + + Sbjct: 1051 DTSLTIPPGVEGTVIGAKVFSRKGNDKDARTELIEKIEEEKLRKDEQDEVRIIRDSARGK 1110 Query: 986 LMEILCGQNA------VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQD-EKVQRNVESL 1038 L +L G+ A G K ++ +L+ +W +V D V+ V + Sbjct: 1111 LKRLLVGKTAGAKIEDRHGVTVLAKGKKITDELLESLTMDRWATISVSDGTDVEEKVAEV 1170 Query: 1039 KVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKG 1098 + ++ F +K++K++ GDD+PPGV+++VKV+VA+KR +Q GDKMAGRHGNKG Sbjct: 1171 LSKLNEQVELIRGVFDDKVQKLRRGDDLPPGVIKMVKVYVAIKRKLQVGDKMAGRHGNKG 1230 Query: 1099 IVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLIND 1158 +VSRILP EDMP++ DG PV+IVLNPLGVPSRMNVGQI ETHLGWA GLG KI+ ++ + Sbjct: 1231 VVSRILPEEDMPYMDDGRPVEIVLNPLGVPSRMNVGQILETHLGWAAKGLGWKIQKMLEE 1290 Query: 1159 YKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEA 1218 + + L+ F+ + + + D + +L VA + GVP+++PVF+GA E Sbjct: 1291 HTSE---ENLKKFIRETYDNADFNKILDTMDREELLLVARRLSRGVPMASPVFEGAGEAK 1347 Query: 1219 INSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLV 1278 I +L A +GQ L+DG TGEPF VTVG +Y+LKL+H+V DK++ARS G YSLV Sbjct: 1348 IKELLTRAGFATNGQVTLFDGRTGEPFKHKVTVGIMYVLKLHHLVDDKIHARSIGPYSLV 1407 Query: 1279 TQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDT 1338 TQQPLGGK+ GGQRLGEMEVW ++AYG +Y LQE LT+KSDDV GRTR+YE+IV G T Sbjct: 1408 TQQPLGGKAQFGGQRLGEMEVWAMEAYGCSYALQEFLTVKSDDVSGRTRMYEAIVKGKHT 1467 Query: 1339 FETGTPESFNVLVKEMQALGLSIDLENSRT 1368 E G PESFNVL+KE+Q+L L ++L Sbjct: 1468 LEPGLPESFNVLIKELQSLCLDVELLEGDE 1497 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 253/1062 (23%), Positives = 422/1062 (39%), Gaps = 65/1062 (6%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 +RK F IIDIP+LI++QK SY FL ++ D R N GL+A F+SV Sbjct: 1 MAYSIANNHLLRKNFATIKNIIDIPNLIDIQKNSYRRFLQSDVPLDLRKNIGLEAVFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI FS + LE+VSY PK+DV++C R +TYA P+K+ +RL+++D + +G + + Sbjct: 61 FPIKDFSETSSLEYVSYTLSKPKYDVEECHQRGMTYAAPMKVKVRLVIWDSGKESGVRGV 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +Y G++PLMT++GTF+I G +R++VSQLHRSPG+ FDHDKG+ SGK+LY+ Sbjct: 121 KDIKEQEVYFGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KDI+ VRIDRRRK+P T L ALG E +L+ +Y Sbjct: 181 RVIPYRGSWLDFEFDHKDILFVRIDRRRKMPATVLLKALGYSVEHLLNYYYKSEQIYIAA 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 +L+ K + D GE ++++ +K T +K L + GV + +S+ Sbjct: 241 -GELRKGIEPELLTMQKAVVDVADA-NGEVIVKANRKFTKASIKKLLDHGVTSIPTSSES 298 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y + D+V+ TGEI +E + L+E+ E+ +LY+D +N + R+TL Sbjct: 299 IIGRYASADVVDPVTGEILLECNQELTADKLDELRQKEVTTFNLLYIDGLNVTSSFRDTL 358 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 + DK +AL++IYR +RPGD T + ++F+ LFF+ ++YDLS VGR+K+N +L L Sbjct: 359 LADKISSSDEALIEIYRRLRPGDPPTLKSSLALFDNLFFNPERYDLSAVGRLKLNFKLGL 418 Query: 423 D------TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 + + ++ +++ L NG +D + + + Sbjct: 419 KVWPDCTILNGPTMLTAAELQNAEQLIGSLLNGTRPVDLALKDRLSSDLTKSLKKLDLKQ 478 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 R+ + + ++S ++ Q + A F L + + + RI Sbjct: 479 PVPERLLEQLADELNSAVANAEFFQRDLIAGL--ELPESFIKLMDLIEQGGYDENRRRIE 536 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 RR L + + D+ R + I + L + Sbjct: 537 GLRRNRMLLEVAYGDSVECCNRNDI--LEIVRYLIELKNGRGAIDDIDHLGNRRVRAVGE 594 Query: 597 FIETPYRK--------VCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +E YR + + +V L + I S F + Sbjct: 595 LLENQYRIGLVRMERAIKERMSLQEVENLMPHD----LINSKPVSAVVKEFFGSSQLSQF 650 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 P ++ E D + G Sbjct: 651 MDQTN---PLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYG--RVCPIETPEGPNI 705 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAI-RIVIRSVEGDLDPSTSGVDIYRLMKF 767 + + G R QV + + E + + + + +F Sbjct: 706 GLIASLSTYARINEHGFVETPYRLVREGQVTSEVKFFSALEEEGHAIAQANALVDQDGRF 765 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDI-------------------IADGPSTDLGDLALG 808 + + ++ DE+ D+ A+ Sbjct: 766 INEYVSARKSGEFVLVQRDEIELMDVAPKQLVSVAAALIPFLENDDANRALMGSNMQRQA 825 Query: 809 RNMLVAFMPWHGYNFEDSMLISE---------RMVSEDVFTSIHIEEFEVMARDTKLGPE 859 +L A P G E + +V I I+ E +T G + Sbjct: 826 VPLLRADSPLVGTGMERIVAKDSGVSVIARHNGVVDAVDAGRIVIKIDEEEYDETGTGVD 885 Query: 860 EITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV-GKITPKGESPMTPEEKLLRAIFG 918 + I++ ++ VG +V GD++ G T GE + + +G Sbjct: 886 IY-NLVKFSRSNQNTCINQKPVVKVGDKVKRGDVIADGPSTDMGELALGQNIIVAFMPWG 944 Query: 919 EKAVD----VRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 + V + + S + + R E + E +D DE Sbjct: 945 GYNFEDSILVSERLTKDDRYTSIHIEEFECVARDTKLGKEEITADIPNLGEEALKDL-DE 1003 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEY 1016 I+ + +IL G+ G L + E Sbjct: 1004 SGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEK 1045 >gi|291334053|gb|ADD93726.1| DNA directed RNA polymerase beta subunit [uncultured marine bacterium MedDCM-OCT-S05-C114] Length = 1187 Score = 1095 bits (2833), Expect = 0.0, Method: Composition-based stats. Identities = 554/1288 (43%), Positives = 764/1288 (59%), Gaps = 162/1288 (12%) Query: 127 EQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIP 186 E+ I+MG+LP++T+ G+F+I G +R+VVSQLHRSPG+ F+ SGK+L+ RIIP Sbjct: 13 EEEIFMGELPIITERGSFIINGAERVVVSQLHRSPGVSFEES---THTSGKVLHGFRIIP 69 Query: 187 DQGLWMDIEFDSKDIIHVRID---RRRKVPVTSFLMALGM---------DSEEILSTFYP 234 D+G W++ +FD D+++V +D RRRK +T+FL AL M ++I+ FY Sbjct: 70 DRGTWIEAQFDQHDLLYVYLDRRRRRRKFLITTFLRAL-MDWDPEKDKDSDQKIIELFYD 128 Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 L A D + + + D G + ++ + LT L+S + G Sbjct: 129 IESLDIN------ELLAKDNVSNYVLVEPMFDRAKGAVLAKAFEPLTKTYLRSFVKAGEN 182 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 L +D+ + Sbjct: 183 QLRA--------------------------------------------------IDTSVD 192 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 + I L D K++ +AL +IY+ +RPG+ AE++ LF DS +YDL+ VGR Sbjct: 193 DGAIIRCLKKDTTKNKDEALKEIYKKLRPGEPPDRVNAEALIKRLFLDSKRYDLAKVGRH 252 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGT---------------IDDIDNL 459 +N++LN TP +VR ED++A + L DL+ GK IDDID+L Sbjct: 253 MLNLKLNQSTPLEVRVTTVEDLVAATRKLTDLKRGKSNEEKAREDAGSIFDMGIDDIDHL 312 Query: 460 GNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDI--DSVMPQDLINAKPVVSAVCEFF 517 GNRRVR+VGE+L N R GL R ER ++ER++ D +S+ P LIN K + + V +FF Sbjct: 313 GNRRVRTVGELLANVCRSGLARTERVVRERMTLYDQGAESLTPGKLINPKALTTVVRDFF 372 Query: 518 CSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEG 577 SQLSQ ++ +N L+ +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG Sbjct: 373 ARSQLSQFKDQINPLAEMTHKRRLSALGPGGLNRERAGFEVRDVHPTHYGRICPIETPEG 432 Query: 578 HNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT---NDVVYLSAMEEENRYIAQANSSL 634 NIGL+++L+++A+++ +GF+++PY V DG V +V YL+A EEE IAQAN+ + Sbjct: 433 PNIGLINTLSTYAKIDEFGFLQSPYHPVKDGVVDKNPKNVAYLNAFEEERFLIAQANTEI 492 Query: 635 DEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 D V CR + +++++D SPKQVVS+AA LIPFLE+DD+NR LMG Sbjct: 493 DTKTGKLVGRVTCRYRDQVSEYEPSEVEYMDVSPKQVVSVAAGLIPFLEHDDANRALMGA 552 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV------ 748 NMQRQAVPLL++++P VGTG+E VA+ S V++ G+V D RIV+ Sbjct: 553 NMQRQAVPLLQSDSPLVGTGIEKKVAEDSRTVTVSESEGVVALADGKRIVVTDDGKLPPR 612 Query: 749 --EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLA 806 + G+ Y + KF RSN TC NQ+P+V+ GD V+ +ADG TD G+LA Sbjct: 613 FLKEPRSDHKRGIYCYEMRKFLRSNAGTCFNQKPIVRKGDTVKVGQALADGACTDNGELA 672 Query: 807 LGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIP 866 LGRN+LVAFMPW GYNFED++LISE++V ED++TSIHIEEFEV ARDTKLGPEEITRDIP Sbjct: 673 LGRNILVAFMPWKGYNFEDAILISEKIVKEDIYTSIHIEEFEVTARDTKLGPEEITRDIP 732 Query: 867 NVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRD 926 N EE L+N+D GI+ +GAEV PGDILVGKITPK E+ + PEEKLLRAIFGEKA DV+D Sbjct: 733 NAGEEALRNLDHLGIVRIGAEVKPGDILVGKITPKSETDLAPEEKLLRAIFGEKAADVKD 792 Query: 927 TSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRL 986 +SL+VPSG G V+D+++ +R ++ + S S R Q++ + D ++ L + L Sbjct: 793 SSLKVPSGTQGIVMDIKVSSRTDAEQEKLSPSDFRRQMKQIKEDFRNQTEDLRSQLTESL 852 Query: 987 MEILCGQNAV-------SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLK 1039 IL G+ +G + ++ L+ + + V+ V + Sbjct: 853 SNILLGEKIPLNVTNSETGDVIIPANRKITKTLLRRLAAVHRF-IEIPPSPVRIKVFEII 911 Query: 1040 VQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGI 1099 YE+ + LED KIE I+ GD + G ++ V+VFVA K+ ++ GDKMAGRHGNKG+ Sbjct: 912 ESYESKFTDLEDDRDRKIEAIEQGDPIDQGAIKNVRVFVAKKQKMRVGDKMAGRHGNKGV 971 Query: 1100 VSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY 1159 V++I+ EDMPFL DGTP++I LNPLGVPSRMNVGQ+ ETHLGWAC LG K+ + I D Sbjct: 972 VAKIVAEEDMPFLPDGTPIEICLNPLGVPSRMNVGQVLETHLGWACKKLGLKVATPIFDG 1031 Query: 1160 KANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAI 1219 I E + Sbjct: 1032 IPESRIQEYL---------------------------------------------KEAEL 1046 Query: 1220 NSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVT 1279 E+G++ LYDG TGE F + + VGY+YMLKLNH+VS K++AR+ G YSL+T Sbjct: 1047 ---------PETGKTFLYDGCTGEQFYQKIVVGYMYMLKLNHLVSSKIHARAVGPYSLIT 1097 Query: 1280 QQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTF 1339 QQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDV GRT++YES+V G+++ Sbjct: 1098 QQPLGGKAQYGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVSGRTKIYESLVKGDNSL 1157 Query: 1340 ETGTPESFNVLVKEMQALGLSIDLENSR 1367 + GTP+SFNVL+KEMQ+L L I + Sbjct: 1158 QAGTPQSFNVLMKEMQSLCLDIRVLGED 1185 >gi|118579112|ref|YP_900362.1| DNA-directed RNA polymerase, beta subunit [Pelobacter propionicus DSM 2379] gi|158512559|sp|A1ALT4|RPOB_PELPD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|118501822|gb|ABK98304.1| DNA-directed RNA polymerase subunit beta [Pelobacter propionicus DSM 2379] Length = 1499 Score = 1092 bits (2825), Expect = 0.0, Method: Composition-based stats. Identities = 537/973 (55%), Positives = 725/973 (74%), Gaps = 12/973 (1%) Query: 406 YDLSTVGRVKMNMRLNLDTPDDVRHIR--KEDIIAIIKILVDLRNGKGTIDDIDNLGNRR 463 + V V R+ + + K DI+ I++ L+DL+NG+G IDDID+LGNRR Sbjct: 530 EENRRVIEVLRRNRMIFEDLYAPVVLTSPKNDILEIVRYLIDLKNGRGAIDDIDHLGNRR 589 Query: 464 VRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLS 523 VR+VGE+L+NQYR+GL+RMER+IKER+S +++++MP DLIN+KPV + V EFF SSQLS Sbjct: 590 VRAVGELLENQYRIGLVRMERAIKERMSLQEVENLMPHDLINSKPVSAVVKEFFGSSQLS 649 Query: 524 QLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLV 583 Q + N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL+ Sbjct: 650 QFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 709 Query: 584 SSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEE 643 +SL+++AR+N +GF+ETPYR V DGK+TN+V + SA+EEE IAQAN+ +D +G F + Sbjct: 710 ASLSTYARINDHGFVETPYRIVLDGKLTNEVRFFSALEEEGHAIAQANAEVDAEGRFVND 769 Query: 644 LVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPL 703 V R +GE ILV R++I+ +D +PKQ+VS+AA+LIPFLENDD+NR LMG NMQRQAVPL Sbjct: 770 YVSARKSGEFILVHRDEIELMDVAPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPL 829 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 L+A++P VGTGME +VAK SG +++A+ G+VE VDA RIV++ E ++D + +GVDIY Sbjct: 830 LRADSPLVGTGMERIVAKDSGVSVIARHNGVVESVDASRIVVKIDESEVDETGTGVDIYN 889 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 L+KF RSNQNTC+N +P+VKVGD V+R+D+IADGPSTD+G+LALG+N++VAFMPW GYNF Sbjct: 890 LIKFARSNQNTCINNKPVVKVGDVVKRHDVIADGPSTDMGELALGQNIVVAFMPWGGYNF 949 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIIC 883 EDS+L+SE++V +D +TSIHIEE+E +ARDTKLG EEIT DIPN+ EE LK++DE GII Sbjct: 950 EDSILVSEKLVKDDRYTSIHIEEYECVARDTKLGKEEITSDIPNLGEEALKDLDESGIIR 1009 Query: 884 VGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVR 943 +GAEV PGDILVGKITPKGE+ ++PEEKLLRAIFGEKA DVRDTSL VP GV GTV+ + Sbjct: 1010 IGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDTSLTVPPGVEGTVIGAK 1069 Query: 944 IFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS------ 997 +F+R G DK+ R+ +E+ + E L +D+ DE I+ ++ +L +L G++ Sbjct: 1070 VFSRKGADKDTRTELIEKAEEEKLRKDEQDEIRIIRQSAEGKLHRLLIGKSLSVKLEDGE 1129 Query: 998 GPKGFKKSTVLSSDLISEYPRSQWWQFAVQDE-KVQRNVESLKVQYETSKSILEDRFKNK 1056 G K ++++ + + +V D+ + NV + +++ F++K Sbjct: 1130 GNLILAKGKEITAEALKSLSINDMGAISVSDDGQTDDNVSKVIDTLNRQIELIQSVFEDK 1189 Query: 1057 IEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGT 1116 I+K++ GDD+PPGV+++VKV++A+KR +Q GDKMAGRHGNKG+VSRILP EDMP+++DG Sbjct: 1190 IQKLRRGDDLPPGVIKMVKVYIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGR 1249 Query: 1117 PVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI 1176 PV+IVLNPLGVPSRMNVGQI ETHLGWA G+G +I+ ++ + L+++L+ V Sbjct: 1250 PVEIVLNPLGVPSRMNVGQILETHLGWAAKGIGWRIEEML---QKQTSAESLKAYLKDVY 1306 Query: 1177 GTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 G I D + ++ V + + GV +++PVF+GA E+ I SML A SGQ L Sbjct: 1307 GDDEVGTFIDGMDQEELMLVCRRLQRGVSMASPVFEGASEDKIKSMLGKAGFHSSGQVTL 1366 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGE 1296 +DG +G+PF VTVG +Y+LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQRLGE Sbjct: 1367 FDGRSGDPFKHKVTVGVMYVLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGE 1426 Query: 1297 MEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQA 1356 MEVW ++AYGAAY LQE LT+KSDDV GRTR+YE+IV G T E G PESFNVL+KE+Q+ Sbjct: 1427 MEVWAMEAYGAAYALQEFLTVKSDDVSGRTRMYEAIVKGKHTLEPGLPESFNVLIKELQS 1486 Query: 1357 LGLSIDLENSRTK 1369 L L ++L + Sbjct: 1487 LCLDVELLEGEDE 1499 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 173/431 (40%), Positives = 271/431 (62%), Gaps = 1/431 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 +RK F K IIDIP+LI++QK SY FL + R N GL+A F+SV Sbjct: 1 MAYSIANNHLLRKTFTKIKNIIDIPNLIDIQKNSYRRFLQQEGVSESRNNTGLEAVFRSV 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI FS +A LE+VSY PK+DV +C R +T+A P+K+ +RL+++D + +G ++I Sbjct: 61 FPIKDFSESASLEYVSYSLSKPKYDVVECHQRGMTFAAPMKVKVRLVIWDTGKESGIRAI 120 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +Y G++PLMT +GTF+I G +R++VSQLHRSPG+ +DHDKG+ SGK+LY+ Sbjct: 121 KDIKEQEVYFGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSA 180 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 R+IP +G W+D EFD KDI++VRIDRRRK+P T L ALG +E++L+ +Y G Sbjct: 181 RVIPYRGSWLDFEFDHKDILYVRIDRRRKMPATVLLKALGYSAEQLLNYYYKSEEIFLTG 240 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + + A L+ K +VD +GE ++++ +K T ++ + E +K + IT D Sbjct: 241 ETPSKSIDAE-LLTLQKALVDVVDPKSGEVIVKANRKFTKASIRKMVEHDIKAVPITFDS 299 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G Y + D+++ TGE+ +E + + + +EI + +L++D+++ + R+TL Sbjct: 300 IIGRYASSDVIDPATGEVLLECNEEVTAEKFDEIKAKGVESFRLLFIDNLHITSSFRDTL 359 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 + DK +AL++IYR +RPGD T + ++F LFF+ ++YDLS VGR+K+N +L L Sbjct: 360 LMDKISTNDEALIEIYRRLRPGDPPTLKSSLALFENLFFNPERYDLSAVGRLKLNFKLGL 419 Query: 423 DTPDDVRHIRK 433 + + Sbjct: 420 KVWPECTVLNA 430 >gi|225629893|ref|YP_002726684.1| DNA-directed RNA polymerase, beta subunit [Wolbachia sp. wRi] gi|225591874|gb|ACN94893.1| DNA-directed RNA polymerase, beta subunit [Wolbachia sp. wRi] Length = 2837 Score = 1092 bits (2823), Expect = 0.0, Method: Composition-based stats. Identities = 547/1226 (44%), Positives = 800/1226 (65%), Gaps = 38/1226 (3%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + ++ ++ D + DL++VQK SYD F P + NE L+ F ++FPI A Sbjct: 16 RVSYSRSIDLKDSLLDLVKVQKESYDSF-----TPKNKGNERLEVIFHTIFPINDPLRRA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV--------------DEFTG 118 +EF+S D PK+D +C+ R +T++ + ++RL+V D Sbjct: 71 TIEFISCRVDDPKYDESECIKRGVTFSAQVIASIRLVVMQDGISLDEYKSIKESGDHSKL 130 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 A +K I+EQ ++ LP+MT GTF+I G+++++VSQ+HRSPG+ FD DKG+ SGKL Sbjct: 131 ATVVKSIEEQKVHFCGLPMMTDKGTFIINGVEKVIVSQMHRSPGVFFDSDKGKTYNSGKL 190 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 +Y+ RIIP +G W+DIEFD KD ++ R+DR+RK+P++ L ALG+ + +IL FY KI Y Sbjct: 191 IYSARIIPYRGSWLDIEFDVKDHLYFRVDRKRKLPISVLLKALGLSNNDILDRFYEKIKY 250 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + D W P D G ++ L+DI+ G ++++ ++TS L K L + +K + Sbjct: 251 VKHKDGWKVPFVP-DKFKGVRLPFDLMDIE-GNVLLKANVRITSRLAKKLYDNELKEYLV 308 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + +CGL++AED+++ + + AG+ I + ++++ + +I +L +D++ YI Sbjct: 309 PFNSICGLFLAEDLMDSASSTKILSAGESIKLEDIKKLELLSVDEISVLNIDNLFVGPYI 368 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 NTL D+N +DAL +IYRV+RPG+V + E F LFF + YDLS +GR+K+N Sbjct: 369 LNTLFLDENMSYQDALYEIYRVLRPGEVPVLEIVEEFFRNLFFSPEYYDLSNIGRLKLNS 428 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 L L+ +D+ + EDII I+K +V LR+G+G++DDID+LGNRRVRSVGE ++NQ+R G Sbjct: 429 YLGLNYDEDLTVLTHEDIIEIVKKIVLLRDGQGSVDDIDHLGNRRVRSVGEFIENQFRTG 488 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LL++ER+I + +S+ +D V P D IN K + + + +FF SSQLSQ + N LS ITH Sbjct: 489 LLKLERAIVDSMSTSSLDKVSPSDFINPKVLTNVLRDFFNSSQLSQFMDQTNPLSEITHK 548 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +AR+N YGFI Sbjct: 549 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARINKYGFI 608 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E+PYRKV + VT+ + YLSA++E + +IA + LDE+ F +++++CR AG ++V Sbjct: 609 ESPYRKVVNRVVTDQIEYLSAIDEGSHHIADTSVKLDENNCFVDDMLYCRYAGSFVMVSS 668 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +++ +ID SPKQV+S+AASLIPFLENDD+NR LMG NMQRQAVPLLK AP V TGMES Sbjct: 669 DQVSYIDVSPKQVISVAASLIPFLENDDANRALMGSNMQRQAVPLLKPTAPLVATGMESF 728 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA SGA ++AKR GIV+ D+ IVIR+ + + + VDIY L KFQRSN NTC+NQ Sbjct: 729 VASGSGAVVLAKRDGIVDSSDSNSIVIRAFDKERV-NYLDVDIYHLRKFQRSNHNTCINQ 787 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLV VGD V++ D+IADGP+ + G+LALG+N+LVAFM W GYNFEDS++IS +V +D+ Sbjct: 788 RPLVCVGDYVKKGDVIADGPAINSGELALGKNLLVAFMSWQGYNFEDSIIISSEVVKKDL 847 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEF+ + DT LG E+ITR IP V+EE L ++D+ GI+ +G V PG ILVGK+ Sbjct: 848 FTSIHIEEFDCVVHDTPLGSEKITRAIPGVNEENLYHLDDSGIVKIGTRVGPGYILVGKV 907 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPK + PE KLL IFGEK+ D D+SL V GTV+DV++F R G+++NER++ Sbjct: 908 TPKPSLSLPPETKLLMTIFGEKSFDCADSSLYTSPDVEGTVIDVQVFTRRGVEENERALL 967 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +++++I ++D + Y L ++L + + R Sbjct: 968 IKQKEINDFEEERDYIINVTSEYFYDELKKLLINSGSQ------------DREKFDSIER 1015 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 QWW ++++ + V+SLK ++ S +FK K+EK+ G D+P GV VKVF+ Sbjct: 1016 EQWWGIGLKNQSISEQVKSLKKDFDEKVSHAIAQFKRKVEKLHEGYDLPQGVSMSVKVFI 1075 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+K +Q GDKMAGRHGNKG++SR++P EDMP+L+DGTPVDI+LNPLGVPSRMNVGQI E Sbjct: 1076 AVKHSLQPGDKMAGRHGNKGVISRVVPVEDMPYLEDGTPVDIILNPLGVPSRMNVGQILE 1135 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 TH+GWAC LG+K+ +++++ + + ++ D+ + + + Sbjct: 1136 THVGWACRKLGEKVSNILDEINKIKSA--FCKGIRSLNDDNFTQFAVAYLDNKKIENIDD 1193 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLR 1224 + ++TP A + +N ++ Sbjct: 1194 DEITASVLNTPN-KNALNDELNELVE 1218 Score = 359 bits (920), Expect = 3e-96, Method: Composition-based stats. Identities = 118/226 (52%), Positives = 160/226 (70%), Gaps = 7/226 (3%) Query: 1162 NGDISPLRSFLEKVIGTGSHT---EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEA 1218 S LR+FL +V GS+ I + D++++ A + + GVPV+ PVF+G +E Sbjct: 1225 KSSYSNLRNFLIEVYSYGSNVSICNDIRNISDNNLIEFARKLRDGVPVAAPVFEGPKDEQ 1284 Query: 1219 INSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLV 1278 I + +A LD SGQ++LYDG +GE FDR VTVGY+YMLKL+H+V K++ARS G YSLV Sbjct: 1285 IAKLFELAGLDNSGQAVLYDGCSGEKFDRKVTVGYMYMLKLHHLVDGKIHARSVGPYSLV 1344 Query: 1279 TQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDT 1338 TQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDD+ GR ++YESI+ G+ Sbjct: 1345 TQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDINGRVKIYESIIKGDSN 1404 Query: 1339 FETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 FE G PESFNV++KE+++L L++DL +N +E+I N + Sbjct: 1405 FECGIPESFNVMIKELRSLCLNVDL----KQNDVVIEDISHTNIAQ 1446 >gi|42519942|ref|NP_965857.1| DNA-directed RNA polymerase, beta/beta' subunits [Wolbachia endosymbiont of Drosophila melanogaster] gi|81652940|sp|Q73IW9|RPOBC_WOLPM RecName: Full=Bifunctional DNA-directed RNA polymerase subunit beta-beta'; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=RNA polymerase beta'; AltName: Full=Transcriptase subunit beta' gi|42409679|gb|AAS13791.1| DNA-directed RNA polymerase, beta/beta' subunits [Wolbachia endosymbiont of Drosophila melanogaster] Length = 2837 Score = 1092 bits (2823), Expect = 0.0, Method: Composition-based stats. Identities = 547/1226 (44%), Positives = 800/1226 (65%), Gaps = 38/1226 (3%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + ++ ++ D + DL++VQK SYD F P + NE L+ F ++FPI A Sbjct: 16 RVSYSRSIDLKDSLLDLVKVQKESYDSF-----TPKNKGNERLEVIFHTIFPINDPLRRA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV--------------DEFTG 118 +EF+S D PK+D +C+ R +T++ + ++RL+V D Sbjct: 71 TIEFISCRVDDPKYDESECIKRGVTFSAQVIASIRLVVMQDGISLDEYKSIKESGDHSKL 130 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 A +K I+EQ ++ LP+MT GTF+I G+++++VSQ+HRSPG+ FD DKG+ SGKL Sbjct: 131 ATVVKSIEEQKVHFCGLPMMTDKGTFIINGVEKVIVSQMHRSPGVFFDSDKGKTYNSGKL 190 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 +Y+ RIIP +G W+DIEFD KD ++ R+DR+RK+P++ L ALG+ + +IL FY KI Y Sbjct: 191 IYSARIIPYRGSWLDIEFDVKDHLYFRVDRKRKLPISVLLKALGLSNNDILDRFYEKIKY 250 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + D W P D G ++ L+DI+ G ++++ ++TS L K L + +K + Sbjct: 251 VKHKDGWKVPFVP-DKFKGVRLPFDLMDIE-GNVLLKANVRITSRLAKKLYDNELKEYLV 308 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + +CGL++AED+++ + + AG+ I + ++++ + +I +L +D++ YI Sbjct: 309 PFNSICGLFLAEDLMDSASSTKILSAGESIKLEDIKKLELLSVDEISVLNIDNLFVGPYI 368 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 NTL D+N +DAL +IYRV+RPG+V + E F LFF + YDLS +GR+K+N Sbjct: 369 LNTLFLDENMSYQDALYEIYRVLRPGEVPVLEIVEEFFRNLFFSPEYYDLSNIGRLKLNS 428 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 L L+ +D+ + EDII I+K +V LR+G+G++DDID+LGNRRVRSVGE ++NQ+R G Sbjct: 429 YLGLNYDEDLTVLTHEDIIEIVKKIVLLRDGQGSVDDIDHLGNRRVRSVGEFIENQFRTG 488 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LL++ER+I + +S+ +D V P D IN K + + + +FF SSQLSQ + N LS ITH Sbjct: 489 LLKLERAIVDSMSTSSLDKVSPSDFINPKVLTNVLRDFFNSSQLSQFMDQTNPLSEITHK 548 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +AR+N YGFI Sbjct: 549 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARINKYGFI 608 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E+PYRKV + VT+ + YLSA++E + +IA + LDE+ F +++++CR AG ++V Sbjct: 609 ESPYRKVVNRVVTDQIEYLSAIDEGSHHIADTSVKLDENNCFVDDMLYCRYAGSFVMVSS 668 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +++ +ID SPKQV+S+AASLIPFLENDD+NR LMG NMQRQAVPLLK AP V TGMES Sbjct: 669 DQVSYIDVSPKQVISVAASLIPFLENDDANRALMGSNMQRQAVPLLKPTAPLVATGMESF 728 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA SGA ++AKR GIV+ D+ IVIR+ + + + VDIY L KFQRSN NTC+NQ Sbjct: 729 VASGSGAVVLAKRDGIVDSSDSNSIVIRAFDKERV-NYLDVDIYHLRKFQRSNHNTCINQ 787 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RPLV VGD V++ D+IADGP+ + G+LALG+N+LVAFM W GYNFEDS++IS +V +D+ Sbjct: 788 RPLVCVGDYVKKGDVIADGPAINSGELALGKNLLVAFMSWQGYNFEDSIIISSEVVKKDL 847 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEF+ + DT LG E+ITR IP V+EE L ++D+ GI+ +G V PG ILVGK+ Sbjct: 848 FTSIHIEEFDCVVHDTPLGSEKITRAIPGVNEENLYHLDDSGIVKIGTRVGPGYILVGKV 907 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPK + PE KLL IFGEK+ D D+SL V GTV+DV++F R G+++NER++ Sbjct: 908 TPKPSLSLPPETKLLMTIFGEKSFDCADSSLYTSPDVEGTVIDVQVFTRRGVEENERALL 967 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +++++I ++D + Y L ++L + + R Sbjct: 968 IKQKEINDFEEERDYIINVTSEYFYDELKKLLINSGSQ------------DREKFDSIER 1015 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 QWW ++++ + V+SLK ++ S +FK K+EK+ G D+P GV VKVF+ Sbjct: 1016 EQWWGIGLKNQSISEQVKSLKKDFDEKVSHAIAQFKRKVEKLHEGYDLPQGVSMSVKVFI 1075 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+K +Q GDKMAGRHGNKG++SR++P EDMP+L+DGTPVDI+LNPLGVPSRMNVGQI E Sbjct: 1076 AVKHSLQPGDKMAGRHGNKGVISRVVPVEDMPYLEDGTPVDIILNPLGVPSRMNVGQILE 1135 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 TH+GWAC LG+K+ +++++ + + ++ D+ + + + Sbjct: 1136 THVGWACRKLGEKVSNILDEINKIKSA--FCKGIRSLNDDNFTQFAVAYLDNKKIENIDD 1193 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLR 1224 + ++TP A + +N ++ Sbjct: 1194 DEITASVLNTPN-KNALNDELNELVE 1218 Score = 359 bits (920), Expect = 3e-96, Method: Composition-based stats. Identities = 118/226 (52%), Positives = 160/226 (70%), Gaps = 7/226 (3%) Query: 1162 NGDISPLRSFLEKVIGTGSHT---EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEA 1218 S LR+FL +V GS+ I + D++++ A + + GVPV+ PVF+G +E Sbjct: 1225 KSSYSNLRNFLIEVYSYGSNVSICNDIRNISDNNLIEFARKLRDGVPVAAPVFEGPKDEQ 1284 Query: 1219 INSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLV 1278 I + +A LD SGQ++LYDG +GE FDR VTVGY+YMLKL+H+V K++ARS G YSLV Sbjct: 1285 IAKLFELAGLDNSGQAVLYDGCSGEKFDRKVTVGYMYMLKLHHLVDGKIHARSVGPYSLV 1344 Query: 1279 TQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDT 1338 TQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDD+ GR ++YESI+ G+ Sbjct: 1345 TQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDINGRVKIYESIIKGDSN 1404 Query: 1339 FETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 FE G PESFNV++KE+++L L++DL +N +E+I N + Sbjct: 1405 FECGIPESFNVMIKELRSLCLNVDL----KQNDVVIEDISHTNIAQ 1446 >gi|58584904|ref|YP_198477.1| DNA-directed RNA polymerase, fusion of beta and beta' subunits. RpoB/RpoC [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497690|sp|Q5GRY9|RPOBC_WOLTR RecName: Full=Bifunctional DNA-directed RNA polymerase subunit beta-beta'; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; Includes: RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=RNA polymerase beta'; AltName: Full=Transcriptase subunit beta' gi|58419220|gb|AAW71235.1| DNA-directed RNA polymerase, fusion of beta and beta' subunits. RpoB/RpoC [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 2839 Score = 1088 bits (2815), Expect = 0.0, Method: Composition-based stats. Identities = 541/1166 (46%), Positives = 785/1166 (67%), Gaps = 35/1166 (3%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + ++ ++ D + DL++VQK SY F P NE L++ F+SVFPI A Sbjct: 16 RISYSRSIDLKDSLLDLVKVQKESYKSF-----TPGNHGNERLESIFRSVFPINDPLHRA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDV--------------DEFTG 118 +EF+S D PK+D +C+ R +T++ + ++RL++ D Sbjct: 71 TIEFISCRIDNPKYDESECIKRGITFSARVIASIRLVIMQDGISLDEYKSIKGSGDHSKL 130 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 + IK I EQ ++ +LP+MT GTF+I G+++++VSQ+HRSPG+ FD DKG+ SGKL Sbjct: 131 STIIKFIGEQEVHFCELPMMTDKGTFIINGVEKVIVSQMHRSPGVFFDSDKGKTYNSGKL 190 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 +Y+ R+IP +G W+DIEFD KD+++ RIDR+RK+P++ L ALG+ + +IL FY KI Y Sbjct: 191 IYSARVIPYRGSWLDIEFDVKDLLYFRIDRKRKLPISVLLKALGLSNSDILDRFYEKIKY 250 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + + W P D G ++ L+D++ G + ++ ++TS L K L + +K + Sbjct: 251 IKYKNSWKVPFVP-DKFKGVRLPFDLMDVE-GNVLFKANVRITSRLAKKLHDDELKEYLV 308 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D +CGL++AED+++ + + AG+ I + ++++ I +I +L +D+++ YI Sbjct: 309 PFDSICGLFLAEDLIDSVSSTKILSAGESIKIEDVKKLELLSIGEISVLNIDNLSVGPYI 368 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 NTL D+N +DAL +IY+V+RPG+V + E F+ LFF+ + YDLS +GR+K+N Sbjct: 369 LNTLFLDENMSYQDALYEIYKVLRPGEVPVLEIVEEFFHNLFFNPEYYDLSNIGRLKLNS 428 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 L LD +D+ + EDII I++ +V LR+G+G++DDID+LGNRRVRSVGE ++NQ+R G Sbjct: 429 YLGLDYDEDLTVLTHEDIIEIVRKIVLLRDGQGSVDDIDHLGNRRVRSVGEFIENQFRAG 488 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LL++ER++ + +S+ +D V D IN K + + + +FF SSQLSQ + N LS ITH Sbjct: 489 LLKLERAVIDSMSTSSLDKVSSPDFINPKVLTNVLRDFFNSSQLSQFMDQTNPLSEITHK 548 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +ARVN YGFI Sbjct: 549 RRLSALGPGGLTRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARVNKYGFI 608 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E+PYRKV + T+ + YLSA++E YIA A++ LD + F +++++CR AG ++V Sbjct: 609 ESPYRKVINRVATDQIEYLSAIDEGLYYIADASAKLDNNNRFIDDMLYCRYAGNFVMVSS 668 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +++ +ID SPKQV+S+AASLIPFLENDD+NR LMG NMQRQAVPLLK AP VGTG+ES Sbjct: 669 DQVSYIDVSPKQVISVAASLIPFLENDDANRALMGSNMQRQAVPLLKPTAPLVGTGIESF 728 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA SGA ++AKR GIV+ D+ IVIR+ + + + GVDIY L KFQRSN NTC+NQ Sbjct: 729 VASGSGAVVLAKRDGIVDSSDSNSIVIRAFDEERV-NYLGVDIYHLKKFQRSNHNTCINQ 787 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 +PLV++GD V+ D+IADGP+ + G+LALG+N+LVAFM W GYNFEDS++IS +V +D+ Sbjct: 788 KPLVRIGDYVKEGDVIADGPAINSGELALGQNLLVAFMSWQGYNFEDSIIISSEIVKKDL 847 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFE + DT LG E+ITR IP V+EE L ++D GI+ +G V PG ILVGKI Sbjct: 848 FTSIHIEEFECVVHDTPLGSEKITRAIPGVNEENLYHLDNSGIVKIGTRVGPGYILVGKI 907 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPK + PE KLL IFGEK+ D D+SL V GTV+DV++F R G+++NER++ Sbjct: 908 TPKPSLLLPPETKLLMTIFGEKSFDCADSSLYTSPDVEGTVIDVQVFTRRGVEENERALL 967 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 ++++++ L +++D + Y L ++L S + + R Sbjct: 968 IKQKEMNDLEKERDYIINVASEYFYDELKKLLV------------HSCSQDQEKLDAIER 1015 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 QWW +++ + V++LK ++ S +FK K+EK+ G D+P GVL VKVF+ Sbjct: 1016 EQWWGIGLKNRSISEQVKNLKKDFDKKVSNTIAQFKQKVEKLDEGYDLPQGVLMSVKVFI 1075 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+K +Q GDKMAGRHGNKG++SR++P EDMP+L+DGTPVDI+LNPLGVPSRMNVGQI E Sbjct: 1076 AVKHSLQPGDKMAGRHGNKGVISRVVPVEDMPYLEDGTPVDIILNPLGVPSRMNVGQILE 1135 Query: 1139 THLGWACVGLGKKIKSLINDYKANGD 1164 TH+GWAC LG+++ +++++ Sbjct: 1136 THVGWACKKLGERVGNILDEINKINS 1161 Score = 355 bits (912), Expect = 2e-95, Method: Composition-based stats. Identities = 120/243 (49%), Positives = 167/243 (68%), Gaps = 9/243 (3%) Query: 1147 GLGKKIKSLINDYKANGD--ISPLRSFLEKVIGTGSHT---EKISDYDDDSVLRVAEQWK 1201 L ++ +L+ +Y + LRSFL +V GS I D + +++ A + + Sbjct: 1208 LLNDELNALVENYLNSCKSAYDNLRSFLIEVYSCGSDVSICNNIRDISNSNLIEFAHKLR 1267 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 +G+PV+ PVF+G ++ I + +A LD SGQ+ YDG TGE FDR VTVGY+YMLKL+H Sbjct: 1268 NGIPVAAPVFEGPKDKNIIKLFTLAGLDPSGQTEAYDGRTGEKFDRKVTVGYMYMLKLHH 1327 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARS G YSLVTQQPLGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDD Sbjct: 1328 LVDDKIHARSVGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDD 1387 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 + GR ++YESI+ G+ FE GTPESFNV++KE+++L L++ L +N+ +E+I N Sbjct: 1388 INGRVKIYESIIKGDSNFECGTPESFNVMIKELRSLCLNVAL----KQNNVVIEDISHTN 1443 Query: 1382 KCE 1384 + Sbjct: 1444 IAQ 1446 >gi|255957888|dbj|BAH96858.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957908|dbj|BAH96876.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957918|dbj|BAH96885.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957938|dbj|BAH96903.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] Length = 1018 Score = 1085 bits (2807), Expect = 0.0, Method: Composition-based stats. Identities = 1017/1018 (99%), Positives = 1017/1018 (99%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK Sbjct: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK Sbjct: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQSIYMGDLPLMTKDGTFVIKG QRIVVSQLHRSPGIHFDHDKGRASLSGKLLY Sbjct: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGTQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ Sbjct: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS Sbjct: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN Sbjct: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL Sbjct: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL Sbjct: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR Sbjct: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET Sbjct: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK Sbjct: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA Sbjct: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT Sbjct: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP Sbjct: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE Sbjct: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR Sbjct: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 >gi|255957552|dbj|BAH96615.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957848|dbj|BAH96822.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957858|dbj|BAH96831.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957868|dbj|BAH96840.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957898|dbj|BAH96867.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] Length = 1018 Score = 1084 bits (2804), Expect = 0.0, Method: Composition-based stats. Identities = 1016/1018 (99%), Positives = 1016/1018 (99%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK Sbjct: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK Sbjct: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQSIYMGDLPLMTKDGTFVIKG QRIVVSQLHRSPGIHFDHDKGRASLSGKLLY Sbjct: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGTQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ Sbjct: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS Sbjct: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN Sbjct: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL Sbjct: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL Sbjct: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMERSIKERISSVDIDSVMPQDLINAKPVVSAV EFFCSSQLSQLEEHVNSLSRITHTRR Sbjct: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVYEFFCSSQLSQLEEHVNSLSRITHTRR 540 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET Sbjct: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK Sbjct: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA Sbjct: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT Sbjct: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP Sbjct: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE Sbjct: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR Sbjct: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 >gi|255957878|dbj|BAH96849.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957928|dbj|BAH96894.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957948|dbj|BAH96912.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957958|dbj|BAH96921.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957968|dbj|BAH96930.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957978|dbj|BAH96939.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957988|dbj|BAH96948.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255957998|dbj|BAH96957.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958008|dbj|BAH96966.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958018|dbj|BAH96975.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958028|dbj|BAH96984.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958038|dbj|BAH96993.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958048|dbj|BAH97002.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958058|dbj|BAH97011.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958068|dbj|BAH97020.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958078|dbj|BAH97029.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958088|dbj|BAH97038.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958098|dbj|BAH97047.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958108|dbj|BAH97056.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958118|dbj|BAH97065.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] gi|255958128|dbj|BAH97074.1| RNA polymerase beta subunit [Candidatus Liberibacter asiaticus] Length = 1018 Score = 1083 bits (2802), Expect = 0.0, Method: Composition-based stats. Identities = 1018/1018 (100%), Positives = 1018/1018 (100%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK Sbjct: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK Sbjct: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY Sbjct: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ Sbjct: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ 240 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS Sbjct: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS 300 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN Sbjct: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL Sbjct: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL Sbjct: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR Sbjct: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET Sbjct: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK Sbjct: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA Sbjct: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP Sbjct: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT Sbjct: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP Sbjct: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE Sbjct: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR Sbjct: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 >gi|161833684|ref|YP_001597880.1| DNA-directed RNA polymerase subunit beta [Candidatus Sulcia muelleri GWSS] gi|182676574|sp|A8Z5T3|RPOB_SULMW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|152206174|gb|ABS30484.1| DNA-directed RNA polymerase beta subunit [Candidatus Sulcia muelleri GWSS] Length = 1328 Score = 1083 bits (2800), Expect = 0.0, Method: Composition-based stats. Identities = 514/1359 (37%), Positives = 765/1359 (56%), Gaps = 127/1359 (9%) Query: 7 FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPIT 66 F + F I PD +++Q S+ +F +N N+G F FPI+ Sbjct: 14 FTKEKTI--NFASVRNKISYPDFLDIQIKSFTNFFCINYTYKNISNKGFYKVFIEYFPIS 71 Query: 67 AFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFT-GAKSIK-- 123 +++F+SY+ P + +++C+ R LTY V ++ ++ + T K K Sbjct: 72 DSKNKFIIDFISYKIYDPLYSIEECIKRGLTYNVYIRARFKIYRTRKRKITIENKRTKYF 131 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 + Q +Y G P MT G+F+ G +R++VSQLHRSPG+ F K+ Y R Sbjct: 132 ETIYQDVYFGTCPYMTPSGSFIFNGSERVIVSQLHRSPGVFFGQYDIPNLP--KISY-AR 188 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRG 242 IIP +G W+++ D +++++ +D ++++P+T+ L ALG + +IL+ F + Sbjct: 189 IIPLKGSWIELSTDINNVMYIYLDIKKRLPITTLLRALGYTRDIDILNIFNLAEEVNINK 248 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G+ L + + K+ +K Sbjct: 249 VNYKKFL---------------------------GRTLAARIFKTSYQKF---------- 271 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN----NAYI 358 E +I +E + + ++ I + +I+ I + + N + I Sbjct: 272 -------------EENDILLERNIKLKKYHIDIILYYKIKVISLYKKNEKNEKNLYYSII 318 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 NTL D +K+A + IY+ ++ A+ N FFD L VGR K+N Sbjct: 319 HNTLKKDPTNSQKEANIYIYKELKDSFPKNDKKAKLFINKFFFDET--HLGEVGRYKLNK 376 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 L LD P + + EDII+II+ L+ L N K +DDIDNL NRRV++VGE L QY +G Sbjct: 377 TLKLDFPLKDQILNIEDIISIIENLIALCNNKKEVDDIDNLANRRVKTVGEQLYTQYTIG 436 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 + R+ R IKERI+ D +++ P +LIN+K + S + FF + +LSQ + N L+ +TH Sbjct: 437 IARVSRIIKERINVKDNETLTPLELINSKTLTSVINSFFGTDELSQFMDQTNPLAEMTHK 496 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RR+S+LG GG++R RAG E+RDV+ +HYGR+CP ET EG NIGL+SSL FA++N+ GFI Sbjct: 497 RRISSLGPGGLSRERAGFEIRDVNYSHYGRLCPIETPEGPNIGLISSLCVFAKINSMGFI 556 Query: 599 ETPYRKVCDGKV--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 ETPY KV GKV +Y+S+ +E + I QAN+ L+ + + R + +V Sbjct: 557 ETPYFKVKKGKVVINEAPIYISSDQEYGKLITQANAILNYKTGVLKNNIIVRVNADFPMV 616 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 +KI++ID S Q+ SI+ASLIPFLE+DD+NR LMG NM RQ+VPLL +AP VGTG+E Sbjct: 617 NYKKINYIDVSTNQIASISASLIPFLEHDDANRALMGSNMMRQSVPLLNPKAPIVGTGLE 676 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQN 773 +A+ A I A+ GIVE VDA I ++ + L + Y+L+KF+++NQN Sbjct: 677 KHLAQYVNALIYAEGDGIVESVDANNIKVKYFNSEKEKLLSFEKRIKTYKLIKFRKTNQN 736 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 TC+N RP+VK G V + ++ +G +T G LALGRN+ VAFMP+ GYNFED+++ISE++ Sbjct: 737 TCLNIRPIVKKGMYVTKGQVLCEGFATQNGKLALGRNIKVAFMPFKGYNFEDAIVISEKV 796 Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDI 893 V ED FTSIHI+E+ + RDTKLG EE T DIPN +EE K +D+ GII +G+EV PGD+ Sbjct: 797 VREDWFTSIHIDEYSLEVRDTKLGMEEFTFDIPNFNEENKKKLDKYGIIKIGSEVKPGDV 856 Query: 894 LVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKN 953 L+G+ITPK E + EE L+AIFG+K +++TSL+ S + G V+D +I+++ ++ Sbjct: 857 LIGRITPKKEGYPSSEENFLKAIFGKKVGTIKNTSLKADSSLFGVVIDTKIYSKFSSKED 916 Query: 954 ERSISVEREQIELLARDKDDEQVILDRNIYSRLM-EILCGQNAVSGPKGFKKSTVLSSDL 1012 E+ ++ ++ + +L + L + G S + K +L+ Sbjct: 917 EQKQFQIKKLNNKFMKNLKLLRKLLINKLILVLEGSVSEGILNSSYKEIIPKGKILNKLN 976 Query: 1013 ISEYPRSQ--WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 + + ++Q +Q V ++ V + Y + L+ + K K ++ GD++ G+ Sbjct: 977 LKKLLKNQEIIYQNWVNNKYKNNLVFKIIKFYYLKINELKIKLKRKKNRLLIGDEITSGI 1036 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +++ KV +A KR ++ GDKM+GRHGNKGIV+RI+ EDMP+L+DGT VD+VLNPLGVPSR Sbjct: 1037 IKIAKVLIAKKRKLKVGDKMSGRHGNKGIVARIVKEEDMPYLEDGTSVDLVLNPLGVPSR 1096 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MN+GQI+ET LGWA LG + I D + +IS Sbjct: 1097 MNLGQIYETILGWAGEKLGINFSTPIFDGASIEEIS------------------------ 1132 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 I ++ G + L+DG TGE FD+PVT Sbjct: 1133 ------------------------KYTDIANL------PSFGNTYLFDGETGEKFDQPVT 1162 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG IYMLKLNHMV DK++ARS G YSL+TQQPLGGKS GGQRLGEMEVW ++A+GAA + Sbjct: 1163 VGVIYMLKLNHMVDDKMHARSIGPYSLITQQPLGGKSKFGGQRLGEMEVWALEAFGAANI 1222 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 L+E+LT+KSDDV GRT+ YE+IV G PESF+V Sbjct: 1223 LREILTVKSDDVKGRTKTYEAIVKRETIPNPGIPESFHV 1261 >gi|269215187|ref|ZP_06159097.1| DNA-directed RNA polymerase, beta subunit [Neisseria lactamica ATCC 23970] gi|269208103|gb|EEZ74558.1| DNA-directed RNA polymerase, beta subunit [Neisseria lactamica ATCC 23970] Length = 1076 Score = 1082 bits (2799), Expect = 0.0, Method: Composition-based stats. Identities = 517/1079 (47%), Positives = 726/1079 (67%), Gaps = 27/1079 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++D+P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MSYSFTEKKRIRKSFAKRENVLDVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG +E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYGNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDIANAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A D+++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ R+ A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVVDGKVTEEIDYLSAIEEGCYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+V+R + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLSDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIE 1058 K + ++++ ++ P + W+ + DE + + +E +K+ + + ++ ++ K + Sbjct: 1017 KLAKGSEITTEYLAGLPSKHDWFDIRLADEDLAKQLELIKLSLQQKREEADELYEIKKK 1075 >gi|297250922|ref|ZP_06934377.1| DNA-directed RNA polymerase, beta subunit [Neisseria polysaccharea ATCC 43768] gi|296837683|gb|EFH21621.1| DNA-directed RNA polymerase, beta subunit [Neisseria polysaccharea ATCC 43768] Length = 1076 Score = 1079 bits (2790), Expect = 0.0, Method: Composition-based stats. Identities = 520/1079 (48%), Positives = 729/1079 (67%), Gaps = 27/1079 (2%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 F R+RK F K ++++P L+ Q SY FL + A D+R ++GLQAAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G A LEFV Y P FD+ +C R +TYA PL+ +RL++ D ++ Sbjct: 61 FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDK--EASKPTV 118 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+++E +YMG++PLMT G+FVI G +R++VSQLHRSPG+ F+HDKG+ SGKLL++ Sbjct: 119 KEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 178 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD+++ RIDRRRK+PVT L ALG ++E+IL FY K + Sbjct: 179 RIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSS 238 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L A L G ++D G ++ GK++T+ ++ + G+ L + + Sbjct: 239 NGVQTDLVAGRL-KGETAKVDILD-KEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPES 296 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L G +A ++++ ETGE+ A D I E+ L + + +++I LY++ ++ AYI NTL Sbjct: 297 LLGKALAAELIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTL 356 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 TD+ DR A + IYR+MRPG+ T E +FN LFF D YDLS VGR+K N R Sbjct: 357 RTDETADRPAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYE 416 Query: 423 DTPDDVR----------------------HIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 + + + EDI+A I LV+LRNG G +DDID+LG Sbjct: 417 QKLSEAQQNSWYGRLLNETFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLG 476 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 NRRVRSVGE+ +NQ+R GL R+ER++KER++ + +++MP DLINAKPV +A+ EFF SS Sbjct: 477 NRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSS 536 Query: 521 QLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNI 580 QLSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NI Sbjct: 537 QLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 596 Query: 581 GLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF 640 GL++SL+ +AR N YGF+ETPYR+V DGKVT ++ YLSA+EE IAQAN+ LD DG+ Sbjct: 597 GLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNL 656 Query: 641 TEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700 +LV CR GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQA Sbjct: 657 IGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQA 716 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 VP L+ E P VGTG+E VA S AIVA+R G+VE VDA R+VIR + + GVD Sbjct: 717 VPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVD 776 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+KF RSNQ+T +NQRP VKVGD ++R D++ADG STDLG+LALG+NM +AFMPW+G Sbjct: 777 IYNLVKFTRSNQSTNINQRPAVKVGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNG 836 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YN+EDS+LISE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE G Sbjct: 837 YNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESG 896 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+ Sbjct: 897 IVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVI 956 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 DV++F R GI +++R+ S+ +++ D +D+ I D + + R+ ++ GQ A GP Sbjct: 957 DVQVFTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPM 1016 Query: 1001 GFKKSTVLSSDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIE 1058 K + ++++ ++ P R W+ + DE + + +E +KV + + ++ ++ K + Sbjct: 1017 KLAKGSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKK 1075 >gi|293977795|ref|YP_003543225.1| DNA-directed RNA polymerase subunit beta [Candidatus Sulcia muelleri DMIN] gi|292667726|gb|ADE35361.1| DNA-directed RNA polymerase subunit beta [Candidatus Sulcia muelleri DMIN] Length = 1331 Score = 1076 bits (2783), Expect = 0.0, Method: Composition-based stats. Identities = 513/1356 (37%), Positives = 760/1356 (56%), Gaps = 126/1356 (9%) Query: 7 FNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPIT 66 F + F I PD +++Q S+ +F +N N+G F FPI+ Sbjct: 14 FTKEKTI--NFASVRNKISYPDFLDIQIKSFTNFFCINYTYKNISNKGFYKVFIEYFPIS 71 Query: 67 AFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFT-GAKSIK-- 123 +++F+SY+ P + +++C+ R LTY V ++ ++ + T K K Sbjct: 72 DSKNKLIIDFISYKIYDPIYSIEECIKRGLTYNVYIRARFKIYRTRKRKITIENKRTKYF 131 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 + Q +Y G P MT G+F+ G +R++VSQLHRSPG+ F K+ Y R Sbjct: 132 ETIYQDVYFGTCPYMTPSGSFIFNGSERVIVSQLHRSPGVFFGQYDIPNLP--KISY-AR 188 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRG 242 IIP +G W+++ D +++++ +D ++++P+T+ L ALG + +IL+ F + Sbjct: 189 IIPLKGSWIELSTDINNVMYIYLDIKKRLPITTLLRALGYTRDIDILNIFNLAEEVNINK 248 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L G+ L + + K+ +K Sbjct: 249 GNYKKFL---------------------------GRTLAARIFKTSYQKF---------- 271 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN-NNAYIRNT 361 E +I +E + + ++ I +I+ I + + N + I NT Sbjct: 272 -------------EENDILLERNIKLKKYHIDIILSYKIKVISLYKKNEKNLYYSIIHNT 318 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 L D +K+A + IY+ ++ A+ N FF L VGR K+N L Sbjct: 319 LKKDPTNSQKEANIYIYKELKDSFPKNDKKAKLFINQFFFYET--HLGEVGRYKLNKTLK 376 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 LD P + + EDII+II L+ L N K +DDIDNL NRRV++VGE L QY +G+ R Sbjct: 377 LDFPLKDQILNIEDIISIIDNLIALCNNKKEVDDIDNLANRRVKTVGEQLYTQYTIGIAR 436 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + R IKERI+ D +++ P +LIN+K + S + FF + +LSQ + N L+ ITH RR+ Sbjct: 437 VSRIIKERINVKDNETLTPIELINSKTLTSVINSFFGTDELSQFMDQTNPLAEITHKRRI 496 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 S+LG GG++R RAG E+RDV+ +HYGR+CP ET EG NIGL+SSL FA++N+ GFIETP Sbjct: 497 SSLGPGGLSRERAGFEIRDVNYSHYGRLCPIETPEGPNIGLISSLCVFAKINSMGFIETP 556 Query: 602 YRKVCDGKV--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 Y KV GKV +Y+S+ +E + I QAN+ L+ + + R + +V + Sbjct: 557 YFKVKKGKVVINEAPIYISSDQEYGKLITQANAILNYKTGVLKNNIIVRVNADFPMVNYK 616 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 KI++ID S Q+ SI+ASLIPFLE+DD+NR LMG NM RQ+VPLL +AP VGTG+E + Sbjct: 617 KINYIDVSTNQIASISASLIPFLEHDDANRALMGSNMMRQSVPLLNPKAPIVGTGLEKHL 676 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRS---VEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A+ A I A+ GIVE VDA I ++ + L + Y+L+KF+++NQNTC+ Sbjct: 677 AQYVNALIYAEGDGIVESVDANNIKVKYFNSEKEKLLSFEKRIKTYKLIKFRKTNQNTCI 736 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 N RP+VK G V + ++ +G +T G LALGRN+ VAFMP+ GYNFED+++ISE++V E Sbjct: 737 NIRPIVKKGMYVTKGQVLCEGFATQNGKLALGRNIKVAFMPFKGYNFEDAIVISEKVVRE 796 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTSIHI+E+ + RDTKLG EE T DIPN +EE K +D+ GII +G+EV PGD+L+G Sbjct: 797 DWFTSIHIDEYSLEVRDTKLGMEEFTFDIPNFNEENKKKLDKYGIIKIGSEVKPGDVLIG 856 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 +ITPK E + EE L+AIFG+K +++TSL+ S + G V+D +I+++ ++E+ Sbjct: 857 RITPKKEGYPSSEENFLKAIFGKKVGTIKNTSLKADSSLFGVVIDTKIYSKFSSKEDEQK 916 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLM-EILCGQNAVSGPKGFKKSTVLSSDLISE 1015 ++ ++ + +L + L + G S + K +L+ + + Sbjct: 917 QLKIKKLNNKFIKNLKLLRKLLINKLILVLEGSVSEGILNSSYKEIIPKGKILNKLNLKK 976 Query: 1016 YPRSQ--WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRV 1073 ++Q +Q V ++ V + Y + L+ + K K ++ GD++ +++ Sbjct: 977 LLKNQEIIYQNWVNNKYKNNLVFKIIKFYYLKINELKIKLKRKKNRLLIGDEITS--IKI 1034 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 KV +A KR ++ GDKM+GRHGNKGIV+RI+ EDMP+L+DGT VD+VLNPLGVPSRMN+ Sbjct: 1035 AKVLIAKKRKLKVGDKMSGRHGNKGIVARIVKEEDMPYLEDGTSVDLVLNPLGVPSRMNL 1094 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQI+ET LGWA LG + I D + +IS Sbjct: 1095 GQIYETILGWAGEKLGINFSTPIFDGASIEEIS--------------------------- 1127 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 I ++ G + L+DG TGE FD+PVTVG Sbjct: 1128 ---------------------KYTDIANL------PSFGNTYLFDGETGEKFDQPVTVGV 1160 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 IYMLKLNHMV DK++ARS G YSL+TQQPLGGKS GGQRLGEMEVW ++A+GAA +L+E Sbjct: 1161 IYMLKLNHMVDDKMHARSIGPYSLITQQPLGGKSKFGGQRLGEMEVWALEAFGAANILRE 1220 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 +LT+KSDDV GRT+ YE+IV G PESF+V Sbjct: 1221 ILTVKSDDVKGRTKTYEAIVKRETIPNPGIPESFHV 1256 >gi|226226261|ref|YP_002760367.1| DNA-directed RNA polymerase beta subunit [Gemmatimonas aurantiaca T-27] gi|226089452|dbj|BAH37897.1| DNA-directed RNA polymerase beta subunit [Gemmatimonas aurantiaca T-27] Length = 1522 Score = 1070 bits (2768), Expect = 0.0, Method: Composition-based stats. Identities = 512/1208 (42%), Positives = 745/1208 (61%), Gaps = 60/1208 (4%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 F K +D+P L+++Q +++ L ++ A ER + GL+ FK +FPIT LE Sbjct: 5 SFAKLETGMDMPHLLDIQTRAFESLLQLDAASQEREDVGLERVFKDLFPITDVHENFSLE 64 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 FV Y PK+ V +C+ RD+TY+ PLK TL+L++F+ K ++I E+ +Y+G+L Sbjct: 65 FVRYSLGEPKYTVAECIERDMTYSAPLKATLQLVIFEDTGDG--KRPRNIIEKEVYLGEL 122 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 PL+T+ GTFVI G +R++VSQLHRSPG+ F+ +G+ L + RIIP +G W++ Sbjct: 123 PLLTELGTFVINGAERVIVSQLHRSPGVVFEES---THPNGQRLLSSRIIPFRGSWVEFT 179 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADL 254 D D+I+V ID+++K P T+ L A G +IL F+ + + Sbjct: 180 VDIHDVIYVHIDKKKKFPATALLRAFGYGENRDILRLFFAERDLDLTKK--RETRNDQRE 237 Query: 255 MVGAKVSSSLV----------------------DIDTGEQVIESGKKLTSGLLKSLKEKG 292 ++GA ++ + + E ++ G +LT +L L +G Sbjct: 238 VLGAIIAEDITLEGEVTAADAPKPKTKKAKAERERSEAELLVREGDELTEEVLNRLVRQG 297 Query: 293 VKFLGITS-----------------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEE 335 +K + + + + +A D+++ +TGE+ E + + ++ Sbjct: 298 IKTVKMFASYTQIDLRDEQDAIDRGEREVRRMLARDVIDQDTGEVVAEKDTTLTDAVIKR 357 Query: 336 IFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESM 395 I ++I + + + I+NTL D K ++AL IY ++RPGD A+ Sbjct: 358 IRKADIVKVFVFVASGRAESTLIKNTLAKDPTKAEEEALKQIYALLRPGDAPNRETAKQA 417 Query: 396 FNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDD 455 LFF +YDL VGR K+N RL L+TP + KED + I++ LV+L G+G +DD Sbjct: 418 LERLFFSPKRYDLGRVGRYKINQRLRLNTPMRTTVLTKEDFVEIMRQLVELHEGRGDVDD 477 Query: 456 IDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSV-DIDSVMPQDLINAKPVVSAVC 514 ID LGNRR+RSVGE++ NQ+ +GL RM R +KER+S D + + DL+NA+ V + + Sbjct: 478 IDQLGNRRIRSVGELIANQFSVGLSRMARLVKERMSINTDPEKISLDDLVNARTVSAVIQ 537 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 FF SSQLSQ + N L+ +TH RRLSALG GG+ R RAG E+RDVH + YGR+CP ET Sbjct: 538 AFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSQYGRMCPIET 597 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSL 634 EG NIGL++SL FA+VN GFIETPYR V +G+VT ++V+L A EE+ IAQANS L Sbjct: 598 PEGPNIGLITSLACFAQVNDLGFIETPYRIVKEGRVTGEIVWLDANREEDAIIAQANSKL 657 Query: 635 DEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 + DG+F ++LV R G+ L P ID++D +P+Q+VSIAA+LIPFLE+DD+NR LMG Sbjct: 658 NPDGTFVDDLVLSRKRGDLPLEPPMNIDYMDVAPEQLVSIAAALIPFLEHDDANRALMGS 717 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS------- 747 NMQRQAVPLL PFVGTG+E+ VA SGA I+A+R G+V V A I+I + Sbjct: 718 NMQRQAVPLLNPATPFVGTGLEATVAVDSGAVIIARRPGVVTNVTADEIIIDAGLNQEAV 777 Query: 748 VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLAL 807 +G +D YRL K+ R+NQ+T +NQRPLV++G V + +++ADG +T++G LAL Sbjct: 778 DDGRPLTRLGQLDRYRLKKYWRTNQDTAINQRPLVRMGQTVAKGEVLADGAATEMGQLAL 837 Query: 808 GRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPN 867 GRN+ VAFMPW+G+NFED++++SER+V DVF+SIHI+E E+ RDTK G EEITR+IPN Sbjct: 838 GRNVTVAFMPWYGHNFEDAIVLSERLVKFDVFSSIHIQELELHVRDTKRGQEEITREIPN 897 Query: 868 VSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDT 927 V+EE L ++DE GI+ +GA V GDILVGKITPKGE+ ++PEEKLL AIFGEKA DV+D+ Sbjct: 898 VAEESLVDLDERGIVRIGAAVKAGDILVGKITPKGETELSPEEKLLTAIFGEKAKDVKDS 957 Query: 928 SLRVPSGVSGTVVDVRIFNR---HGIDKNERSISVEREQIELLARDKDDEQVILDRNIYS 984 SL+V G+ G V+DV+IF+R ++K+ E ++E + + +E + + Sbjct: 958 SLKVSPGMEGVVIDVKIFSRVEDQVVEKDRGERIGEVRRLEGEEKIRVNEVRDAELSRLL 1017 Query: 985 RLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS--QWWQFAVQDEKVQRNVESLKVQY 1042 + A + + T L+ +++ + F V+++K V + Sbjct: 1018 EGETVALALKAGTVEEAIGAGTTLTREILDGLRFATLDLKTFRVENKKANDRVRDILDAA 1077 Query: 1043 ETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSR 1102 K+ +E+R +++I++I D++PPGV+++VKV++A KR I GDKMAGRHGNKGIV+R Sbjct: 1078 AEEKARIEERAEDRIDRILQPDELPPGVIQLVKVYLAEKRKISVGDKMAGRHGNKGIVAR 1137 Query: 1103 ILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKAN 1162 I+P EDMPFL +G PVDIVLNPLGVPSRMNVGQI ETHLGWA L K+ + + Sbjct: 1138 IVPEEDMPFLPNGRPVDIVLNPLGVPSRMNVGQILETHLGWAAKLLNFYAKTPVFEGANE 1197 Query: 1163 GDISPLRS 1170 +I L Sbjct: 1198 REIGLLMK 1205 Score = 326 bits (835), Expect = 2e-86, Method: Composition-based stats. Identities = 93/167 (55%), Positives = 120/167 (71%), Gaps = 4/167 (2%) Query: 1213 GADEEAI----NSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVY 1268 G + + + ++R+A L +G+ L DG TGE F PVTVG IYMLKL+H+V DK++ Sbjct: 1344 GGKDADVDAAASELIRLAGLTPTGKVRLRDGRTGETFTAPVTVGEIYMLKLSHLVDDKIH 1403 Query: 1269 ARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRV 1328 ARS G YSLVTQQPL GK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDV GR+RV Sbjct: 1404 ARSIGPYSLVTQQPLAGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVNGRSRV 1463 Query: 1329 YESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 YE+IV G + E G PESFNVLVKE+QALG+ + L + ++ Sbjct: 1464 YEAIVKGQNLPEPGIPESFNVLVKELQALGIKVTLGATDGTGVELVD 1510 >gi|190570968|ref|YP_001975326.1| DNA-directed RNA polymerase, beta/beta' subunits [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019484|ref|ZP_03335290.1| DNA-directed RNA polymerase, beta/beta' subunits [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357240|emb|CAQ54662.1| DNA-directed RNA polymerase, beta/beta' subunits [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994906|gb|EEB55548.1| DNA-directed RNA polymerase, beta/beta' subunits [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 2839 Score = 1070 bits (2767), Expect = 0.0, Method: Composition-based stats. Identities = 541/1225 (44%), Positives = 798/1225 (65%), Gaps = 42/1225 (3%) Query: 14 RKFFGKNPEIID-IPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R + ++ ++ D + DL++VQK SY+ F P+ NE L+A F ++FPI+ A Sbjct: 16 RVSYSRSIDLKDSLLDLVKVQKGSYNSF-----TPNNESNERLEAIFHTIFPISDPLHRA 70 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVF--------------DVDEFTG 118 +EF++ D K+ +C+ R +T++ + ++RL++ D D Sbjct: 71 TIEFLNCRVDDLKYSESECIKRGITFSAQVIASIRLVIMQDGVSLEKYQEIKEDDDHSKL 130 Query: 119 AKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKL 178 A IK +EQ + +LP+MT GTF+I G+++++VSQ+HRSPG+ FD D+G+ SGKL Sbjct: 131 ATVIKSAEEQEVRFCELPMMTDKGTFIINGVEKVIVSQMHRSPGVFFDSDRGKTYNSGKL 190 Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 +Y+ R+IP +G W+DIEFD KD ++ IDR+RK+P++ L ALG+ + +IL+ FY KI Y Sbjct: 191 IYSARVIPYRGSWLDIEFDVKDHLYFHIDRKRKLPISVLLKALGLSNNDILNKFYEKIEY 250 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 + W P S D G ++ L +++ G ++++ ++TS L K+L + G+K I Sbjct: 251 IKHKSGWRVPFSP-DKFKGVRLPFDLKNVE-GNVLLKANVRITSKLAKNLYDNGLKEYLI 308 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D +CGL++AED+++ + + AG+ I + ++++ I I +L +D+V+ YI Sbjct: 309 PYDSICGLFLAEDLIDSASSTKVLSAGESIKLEDIKKLELLSIDKISVLNIDNVSVGPYI 368 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 NTL D+N ++AL +IY+V+RPG+V + E F LFF S+ YDLS +GR+K+N Sbjct: 369 LNTLFLDENMSYENALYEIYKVLRPGEVPILKIVEEFFRNLFFSSEYYDLSNIGRLKLNS 428 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 L L+ +++ + EDII II+ +V LR+G+G++DDID+L NRRVRSVGE ++NQ+R G Sbjct: 429 CLGLNYEENLTTLTHEDIIEIIRKIVLLRDGQGSVDDIDHLANRRVRSVGEFIENQFRTG 488 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 LL++ R++ + +S+ +D V P D IN K + + + +FF SSQLSQ + N LS ITH Sbjct: 489 LLKLGRAVVDSMSTSSLDKVSPSDFINPKVLTNVLRDFFNSSQLSQFMDQTNPLSEITHK 548 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL +AR+N YGFI Sbjct: 549 RRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARINKYGFI 608 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 E+PYRKV + VT+ + YLSA++E YIA ++ LDE+ F +++++CR AG ++V Sbjct: 609 ESPYRKVVNKVVTDQIEYLSAIDEGLYYIADTSAKLDENNCFVDDMLYCRYAGTFVMVNS 668 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 ++ +ID SPKQV+S+AASLIPFLENDD+NR LMG NMQRQAVPLLK AP V TGMES Sbjct: 669 NQVSYIDLSPKQVISVAASLIPFLENDDANRALMGSNMQRQAVPLLKPTAPLVATGMESF 728 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 VA SGA ++AKR GIV+ D+ IVIR+ + + VDIY L KFQRSN NTC+NQ Sbjct: 729 VASGSGAVVLAKRGGIVDSSDSNSIVIRAFDKGGI-NYLDVDIYHLRKFQRSNHNTCINQ 787 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 +PLV VGD V+ D+IADGP+ + G+LALG+N+LVAFM W GYNFEDS++IS +V +D+ Sbjct: 788 KPLVHVGDCVKEGDVIADGPAINNGELALGQNLLVAFMSWQGYNFEDSIIISSEVVKKDL 847 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 FTSIHIEEFE + DT LG E+ITR IP V+EE L ++D+ GI+ VG V PG ILVGK+ Sbjct: 848 FTSIHIEEFECVVHDTPLGSEKITRAIPGVNEENLYHLDDSGIVKVGTRVGPGYILVGKV 907 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 TPK + PE KLL IFGEK+ D D+SL + G V+DV++F R G ++NER+ Sbjct: 908 TPKHSLSLPPETKLLMTIFGEKSFDCVDSSLYTSPDIEGIVIDVQVFTRRGEEENERAFL 967 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 +++++ +++D ++++ Y L +IL + + I+ R Sbjct: 968 IKQKEANDFEKERDHIINVINQYFYDELRKILINSGSQ------------DRESINFIER 1015 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 WW ++++ + + VESLK ++ S FK K+EK+ G D+P GV VKVF+ Sbjct: 1016 EGWWDIGLKNQSISKQVESLKKDFDEKVSHAIANFKRKVEKLHEGYDLPQGVSMSVKVFI 1075 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+K +Q GDKMAGRHGNKG++SR++P EDMP+L+DGTP+DI+LNPLGVPSRMNVGQI E Sbjct: 1076 AVKHSLQPGDKMAGRHGNKGVISRVVPVEDMPYLEDGTPIDIILNPLGVPSRMNVGQILE 1135 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 TH+GWAC LG+K+ +++++ I + + + + Y D+ Sbjct: 1136 THVGWACKKLGEKVGNILDE---INKIKRAFCEAIRSLSDDDFEKFAALYLDNKKFEDIN 1192 Query: 1199 QWKSGVPVSTPVFDGADEEAINSML 1223 + ++ + D +++ +N+ L Sbjct: 1193 DDE----ITASILDTPNKDELNNEL 1213 Score = 349 bits (896), Expect = 2e-93, Method: Composition-based stats. Identities = 116/222 (52%), Positives = 157/222 (70%), Gaps = 7/222 (3%) Query: 1166 SPLRSFLEKVIGTGSHT---EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSM 1222 S LR FL +V GS+ I D +D+ ++ A + + G+PV+ PVF+G +E I + Sbjct: 1229 SSLRHFLIEVYSCGSNLSICNNIRDINDNHLIEFAYKLRDGIPVTAPVFEGPKDEQIVKL 1288 Query: 1223 LRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQP 1282 +A LD SGQ +LYDG +GE FDR VTVGY+YMLKL+H+V K++ARS G YSLVTQQP Sbjct: 1289 FELAGLDNSGQVVLYDGCSGEKFDRKVTVGYMYMLKLHHLVDGKIHARSVGPYSLVTQQP 1348 Query: 1283 LGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETG 1342 LGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDD+ GR ++YES++ G+ FE G Sbjct: 1349 LGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDINGRVKIYESVIKGDSNFECG 1408 Query: 1343 TPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 PESFNV++KE+++L ++DL +N +E+I N + Sbjct: 1409 IPESFNVMIKELRSLCFNVDL----KQNDIVIEDISHTNIAQ 1446 >gi|323144266|ref|ZP_08078891.1| DNA-directed RNA polymerase, beta subunit [Succinatimonas hippei YIT 12066] gi|322415959|gb|EFY06668.1| DNA-directed RNA polymerase, beta subunit [Succinatimonas hippei YIT 12066] Length = 1490 Score = 1058 bits (2736), Expect = 0.0, Method: Composition-based stats. Identities = 527/1012 (52%), Positives = 706/1012 (69%), Gaps = 21/1012 (2%) Query: 363 VTDKNKDRKDALLDIYRV-MRPGDVSTFSVAESMFN----FLFFDSDKYDLSTVGRVKMN 417 DK+ A +++V + GD +F L + + Sbjct: 493 KADKDPMAPAATRYLHKVKINVGDEVISFERAVIFPLSELNLNVNVKDLEAKVTDNRGKA 552 Query: 418 MRLNLDTPDDVR-HIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 + L + P++ R + DII +++ LV +RNGK IDDID+LGNRR+RSVGEM +NQ+R Sbjct: 553 LHLEPNQPEEERGTLSNNDIIKVMRYLVKIRNGKENIDDIDHLGNRRIRSVGEMAENQFR 612 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GL+R+ER++KER+S D+D+ PQ+LINAKP+ +A+ EFF SSQLSQ + N LS +T Sbjct: 613 IGLVRVERAVKERLSLGDLDNTTPQELINAKPISAAIKEFFGSSQLSQFMDQNNPLSEVT 672 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL FAR N YG Sbjct: 673 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLAVFARCNDYG 732 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+ETPYR+V DG+V+ D YLSA++E IAQAN+ LDE+G ++ V CR GE + Sbjct: 733 FLETPYRRVKDGQVSEDFEYLSAIDEGQYVIAQANTDLDENGHIIDDYVQCRYKGESTVR 792 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + F+D SP+QV+S+AA+LIPFLE+DD+NR LMG NMQRQAVP +++E PFVGTGME Sbjct: 793 RSSDVQFMDVSPQQVISVAAALIPFLEHDDANRALMGANMQRQAVPTVRSEKPFVGTGME 852 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKFQRSNQNTC 775 VA SG +I+A+R G+V+ VD RIVIR + +G+DIY L+K+ RSNQNTC Sbjct: 853 RAVAVDSGVSIIARRGGVVDNVDGARIVIRVNPDEIEGSHDAGIDIYNLIKYTRSNQNTC 912 Query: 776 VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835 +NQRP V + ++V D++ADG STDLG+LALG+N+ VAFMPW+GYN+EDS+L+SER+ + Sbjct: 913 INQRPCVSLHEKVVAGDVLADGSSTDLGELALGQNLRVAFMPWNGYNYEDSILVSERVAA 972 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 +D T+IHI+E +ARDTKLGPEEIT DIPNV E L +DE GI+ VGAEV GDILV Sbjct: 973 KDRLTTIHIQELSCVARDTKLGPEEITADIPNVGEAALSKLDEAGIVYVGAEVVGGDILV 1032 Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNER 955 GK+TPKGE+ +TPEEKLLRAIFGEKA +V+D+SLRVP+GVSGTVVDV+IF R G++K++R Sbjct: 1033 GKVTPKGETQLTPEEKLLRAIFGEKASEVKDSSLRVPNGVSGTVVDVQIFTRDGVEKDKR 1092 Query: 956 SISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISE 1015 + +E I +D D+E L + ++ L K + + Sbjct: 1093 AKEIEEMHIAKAKKDLDEEFAFLSAGLLRQVRAHL-----------IKNGMK--EKDVEK 1139 Query: 1016 YPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVK 1075 ++ + D+ QR +E V+ K +++F+ +KI GDD+ PGVL++VK Sbjct: 1140 LSDTEVLAQRLDDDTAQRQLEEFAVRLTDYKKEYQEKFETARKKITEGDDLTPGVLKIVK 1199 Query: 1076 VFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQ 1135 V++A+KR IQ GDKMAGRHGNKG++S+I P EDMPF ++G PVDIVLNPLGVPSRMN+GQ Sbjct: 1200 VYLAVKRRIQPGDKMAGRHGNKGVISKICPIEDMPFDENGKPVDIVLNPLGVPSRMNIGQ 1259 Query: 1136 IFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLR 1195 + E HLG A G+G I ++ + KA +I + + + G S I D V+ Sbjct: 1260 VLEVHLGLAAKGIGDMINKMLIEQKAIAEIRKVLQQIYDL-GNTSQKVDIDSMSDAEVMT 1318 Query: 1196 VAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIY 1255 +A + G+ V+TPVFDGA EE+I +L++A L ESGQ LYDG TG PF+R VTVGY+Y Sbjct: 1319 LANNLRDGLTVATPVFDGATEESIKELLKLAGLPESGQMTLYDGTTGLPFERKVTVGYMY 1378 Query: 1256 MLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEML 1315 MLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L+EML Sbjct: 1379 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLREML 1438 Query: 1316 TIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 T+KSDDV GRT++Y++IV G+ + G PESFNVL++E+++LG++IDL Sbjct: 1439 TVKSDDVNGRTKMYKNIVDGSYRMDAGIPESFNVLLREIRSLGINIDLVRKD 1490 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 167/425 (39%), Positives = 248/425 (58%), Gaps = 19/425 (4%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK +++D P L+ VQ S+ F+ + + GL AAFKSV Sbjct: 1 MVYSYTEQKRIRKDFGKRVKVLDTPYLLAVQLDSFKQFISSD----PKSENGLVAAFKSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L + S+ PKFDV +C+ R TY+ PLK+ L L+ ++ D K++ Sbjct: 57 FPIRSYSGNAELCYNSFHLGEPKFDVRECMIRGTTYSAPLKVKLSLVRYEKDAP---KTV 113 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K+ +Q +YMG++PLMT +GTFVI G +R+VVSQLHRSPG+ FD+DKG+ G++L++ Sbjct: 114 KERIDQDVYMGEIPLMTDNGTFVINGTERVVVSQLHRSPGVFFDNDKGKTHP-GRILFSA 172 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD +D + VRIDRRRK+P + L ALG +E+IL F+ + +G Sbjct: 173 RIIPYRGSWLDFEFDHRDNMFVRIDRRRKLPASILLRALGYTTEQILDLFFDTVDIEFKG 232 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G S + + ++E GKK+T+ ++ LK+ V + I + Sbjct: 233 TKINMELVPERL-RGETASFDIKL--NKKVLVEKGKKITARHIRELKKAEVTSIEIPQEY 289 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L VA D E G + A V++E + I + I+ I ILY V+ +I TL Sbjct: 290 LYDKIVAHDYATKE-GTPVVAANTVLNETVVNNIRDNGIKKISILYTSQVDEGPFIAETL 348 Query: 363 VTDKNK-------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVK 415 D ++ DR AL +IY++MRPG+ T AE++F+ LFF ++YDLS+VGR+K Sbjct: 349 RNDTSRDLTSPEADRLAALYEIYKMMRPGEPPTAEAAETLFHNLFFAEERYDLSSVGRMK 408 Query: 416 MNMRL 420 N R Sbjct: 409 FNSRF 413 >gi|257137636|ref|ZP_05585898.1| DNA-directed RNA polymerase subunit beta [Burkholderia thailandensis E264] Length = 1052 Score = 1047 bits (2708), Expect = 0.0, Method: Composition-based stats. Identities = 524/1051 (49%), Positives = 732/1051 (69%), Gaps = 6/1051 (0%) Query: 186 PDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFW 245 P +G W+D EFD KD+++ R+DRRRK+PVT L A+G+ E+IL+ F+ ++ + Sbjct: 2 PYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMDEGA 61 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCG 305 L G + D G+ +++ K++ + ++ L+ K++ + D L G Sbjct: 62 QMEFVPERL-RGEVARFDITD-REGKVIVQKDKRINAKHIRDLEAAKTKYISVPEDYLLG 119 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 +A+++V+G+TGE+ A D I E L+++ ++I++I LY + ++ YI +TL D Sbjct: 120 RVLAKNVVDGDTGEVIANANDEITEGVLDKLREAKIKEIQTLYTNDLDQGPYISSTLRVD 179 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 + D+ A + IYR+MRPG+ T E++FN LF+ D YDLS VGR+K N R+ D Sbjct: 180 ETVDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI 239 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 ++ +DI+A IKILV+LRNGKG +DDID+LGNRRVR VGE+ +NQ+R GL+R+ER+ Sbjct: 240 TGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA 299 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 +KER+ + +++MP DLIN+KP+ SA+ EFF SSQLSQ + N LS ITH RR+SALG Sbjct: 300 VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG 359 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPYRKV Sbjct: 360 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV 419 Query: 606 CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFID 665 D KVT+ + YLSA+EE IAQAN+++ DGS +ELV R AGE ++V ++I ++D Sbjct: 420 VDSKVTDQIDYLSAIEEGRYMIAQANAAISNDGSLVDELVSSREAGETMMVTPDRIQYMD 479 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E VA SG Sbjct: 480 VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVDSGT 539 Query: 726 AIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 + A R G+V+ VDA RIVIR + + GVDIY L+K+ RSNQNT +NQRP+VK+G Sbjct: 540 TVQALRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKMG 599 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 D+V R D++ADG STDLG+LALG+NML+AFMPW+GYNFEDS+LISER+V++D +TSIHIE Sbjct: 600 DKVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSIHIE 659 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKGE+ Sbjct: 660 ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ 719 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +TPEEKLLRAIFGEKA DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + ++++ Sbjct: 720 LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK 779 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFA 1025 D +D+ I++ + + RL +L G+ A GPK K T + + + W+ Sbjct: 780 RYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWFDIR 839 Query: 1026 VQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQ 1085 + D++ +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR +Q Sbjct: 840 LADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ 899 Query: 1086 SGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWAC 1145 GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLGWA Sbjct: 900 PGDKMAGRHGNKGVVSKIVPVEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA 959 Query: 1146 VGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVP 1205 GLG +I ++ I LR FL K+ E + + DD +L +A+ + GVP Sbjct: 960 KGLGWRIGEML---ARQTKIEELRVFLTKIYNESGRAEDLESFSDDEILELAKNLREGVP 1016 Query: 1206 VSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 +TPVFDGA EE ++ ML +A + L Sbjct: 1017 FATPVFDGATEEEMSKMLDLA-FPDDIAEQL 1046 >gi|226328684|ref|ZP_03804202.1| hypothetical protein PROPEN_02579 [Proteus penneri ATCC 35198] gi|225201870|gb|EEG84224.1| hypothetical protein PROPEN_02579 [Proteus penneri ATCC 35198] Length = 943 Score = 1046 bits (2704), Expect = 0.0, Method: Composition-based stats. Identities = 500/952 (52%), Positives = 675/952 (70%), Gaps = 9/952 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQNGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG A L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L A+ +EEIL F+ K ++ Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMNYSTEEILGLFFEKTLFEISN 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L+++ + + + + Sbjct: 235 NKLMMTLVPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKEQIDRIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G VA D ++ TGE+ A I L + + + I L+ + +++ AYI T+ Sbjct: 292 IAGKVVARDYIDEATGELICAANMEISLDVLARLSQAGHKTIETLFTNDLDHGAYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AE++F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLGR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + +EDII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEVEGSGILSQEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDALMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V + VT+++ YLSA+EE N IAQANS LD+D F EELV CR GE L R+++ Sbjct: 592 RVVENNAVTDEIHYLSAIEEGNFIIAQANSVLDDDNHFVEELVTCRHKGESSLFSRDQVQ 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+ + P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRGDKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+V+ VDA RIVI+ E + +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEEETYAGEAGIDIYSLTKYTRSNQNTCINQTPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYN+EDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVDRGDVLADGPSTDLGELALGQNMRVAFMPWNGYNYEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E ++RDTKLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNE 954 E+ +TPEEKLLRAIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K Sbjct: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKKR 943 >gi|41018108|sp|Q93MK7|RPOB_WOLPI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|15081478|gb|AAK83926.1|AF401090_1 RNA polymerase beta-subunit [Wolbachia pipientis] Length = 1436 Score = 1040 bits (2690), Expect = 0.0, Method: Composition-based stats. Identities = 529/1211 (43%), Positives = 780/1211 (64%), Gaps = 45/1211 (3%) Query: 28 DLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFD 87 DL++VQK SY+ F P+ NE L+A F ++FPI+ A +EF++ D K+ Sbjct: 37 DLVKVQKGSYNSF-----TPNNESNERLEAIFHTIFPISDPLHRATIEFLNCRVDDLKYS 91 Query: 88 VDDCLWRDLTYAVPLKITLRLIVFDV--------------DEFTGAKSIKDIKEQSIYMG 133 +C+ R +T++ + ++RL++ D A IK +EQ + Sbjct: 92 ESECIKRGITFSAQVIASIRLVIMQDGVSLEKYQEIKEYDDHSKLATVIKSAEEQEVRFC 151 Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMD 193 +LP+MT GTF+I G+++++VSQ+HRSPG+ FD DKG+ SGKL+Y+ R+IP +G W+D Sbjct: 152 ELPMMTDKGTFIINGVEKVIVSQMHRSPGVFFDSDKGKTYNSGKLIYSARVIPYRGSWLD 211 Query: 194 IEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAAD 253 IEFD KD ++ RIDR+RK+P++ L ALG+ + +IL+ F VY W P D Sbjct: 212 IEFDVKDHLYFRIDRKRKLPISVLLKALGLSNNDILNKFMKNRVYK-HKSGWKVPFFP-D 269 Query: 254 LMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIV 313 G ++ L +++ G ++++ ++TS L K+L + G+K I D +CGL++AED++ Sbjct: 270 KFKGVRLPFDLKNVE-GNVLLKANVRITSKLAKNLYDNGLKEYLIPYDSICGLFLAEDLI 328 Query: 314 NGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDA 373 + + + AG+ I + ++++ I I +L +D+V+ YI NTL D+N ++A Sbjct: 329 DSASSTKILSAGESIKLEDIKKLELLSIDKISVLNIDNVSVGPYILNTLFLDENMSYENA 388 Query: 374 LLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRK 433 L +IY+V+RPG+V + E F LFF + YDLS +GR+K+N L L+ +++ + Sbjct: 389 LYEIYKVLRPGEVPVLKIVEEFFRNLFFSPEYYDLSNIGRLKLNSCLGLNYEENLTTLTH 448 Query: 434 EDIIAIIKILVDLRNGKGTI-DDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 EDII II+ +V LR+G+G++ DDID+L NRRVRSVGE ++NQ+R GLL++ R++ + +S+ Sbjct: 449 EDIIEIIRKIVLLRDGQGSVDDDIDHLANRRVRSVGEFIENQFRTGLLKLGRAVVDSMST 508 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 +D V P D IN K + + + +FF SSQLSQ + N LS ITH RRLSALG GG+ R Sbjct: 509 SSLDKVSPSDFINPKVLTNVLRDFFNSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRE 568 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTN 612 RAG E+RDVHPTHYGRICP ET E + +SL +AR+N YGFIE+PYRKV + VT+ Sbjct: 569 RAGFEVRDVHPTHYGRICPIETPEQNIAY--NSLAIYARINKYGFIESPYRKVVNKVVTD 626 Query: 613 DVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVV 672 + YLSA++E YIA ++ LDE+ F +++++CR AG ++V ++ +ID SPKQV+ Sbjct: 627 QIEYLSAIDEGLYYIADTSAKLDENNCFVDDMLYCRYAGTFVMVNSNQVSYIDLSPKQVI 686 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 S+AASLIPFLENDD+NR LMG NMQRQAVPLLK AP V TGMES VA SGA ++AKR Sbjct: 687 SVAASLIPFLENDDANRALMGSNMQRQAVPLLKPTAPLVATGMESFVASGSGAVVLAKRG 746 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRND 792 GIV+ D+ IVIR+ + + VDIY L KFQRSN NTC+NQ+PLV VGD V+ D Sbjct: 747 GIVDSSDSNSIVIRAFDKGGI-NYLDVDIYHLRKFQRSNHNTCINQKPLVHVGDCVKEGD 805 Query: 793 IIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR 852 +IADGP+ + G+LALG+N+LVAFM W GYNFEDS++IS +V +D+FTSIHIEEFE + Sbjct: 806 VIADGPAINNGELALGQNLLVAFMSWQGYNFEDSIIISSEVVKKDLFTSIHIEEFECVVH 865 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 DT LG E+ITR IP V+EE L ++D+ GI+ VG V PG ILVGK+TP+ + PE KL Sbjct: 866 DTPLGSEKITRAIPGVNEENLYHLDDSGIVKVGTRVGPGYILVGKVTPRHSLSLPPETKL 925 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 L IFGEK+ D D+SL + G V+DV++F R G ++NER+ +++++ +++D Sbjct: 926 LMTIFGEKSFDCVDSSLYTSPDIEGIVIDVQVFTRRGEEENERAFLIKQKEANDFEKERD 985 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 ++++ Y L +IL + + I+ R WW ++++ + Sbjct: 986 HIINVINQYFYDELRKILINSGSQ------------DRESINFIEREGWWDIGLKNQSIS 1033 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + VESLK ++ S FK K+EK+ G D+P GV VKVF+A+K +Q GDKMAG Sbjct: 1034 KQVESLKKDFDEKVSHAITNFKRKVEKLHEGYDLPQGVSMSVKVFIAVKHSLQPGDKMAG 1093 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG++SR++P EDMP+L+DGTP+DI+LNPLGVPSRMNVGQ+ ETH+GWAC LG+K+ Sbjct: 1094 RHGNKGVISRVVPVEDMPYLEDGTPIDIILNPLGVPSRMNVGQMLETHVGWACKKLGEKV 1153 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 +++++ I + + + + Y D+ + ++ + D Sbjct: 1154 GNILDE---INKIKRAFCEAIRSLSDDDFEKFAALYLDNKKFEDINDDE----ITASILD 1206 Query: 1213 GADEEAINSML 1223 +++ +N+ L Sbjct: 1207 TPNKDELNNEL 1217 Score = 346 bits (888), Expect = 2e-92, Method: Composition-based stats. Identities = 112/201 (55%), Positives = 149/201 (74%), Gaps = 3/201 (1%) Query: 1166 SPLRSFLEKVIGTGSHT---EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSM 1222 S LR FL +V GS+ I D +D+ ++ A + + G+PV+ PVF+G +E I + Sbjct: 1233 SSLRHFLIEVYSCGSNLSICNNIRDINDNHLIEFAYKLRDGIPVTAPVFEGPKDEQIVKL 1292 Query: 1223 LRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQP 1282 +A LD SGQ +LYDG +GE FDR VTVGY+YMLKL+H+V K++ARS G YSLVTQQP Sbjct: 1293 FELAGLDNSGQVVLYDGCSGEKFDRKVTVGYMYMLKLHHLVDGKIHARSVGPYSLVTQQP 1352 Query: 1283 LGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETG 1342 LGGKS+ GGQR GEME W +QAYGAAY LQEMLT+KSDD+ GR ++YES++ G+ FE G Sbjct: 1353 LGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDINGRVKIYESVIKGDSNFECG 1412 Query: 1343 TPESFNVLVKEMQALGLSIDL 1363 PESFNV++KE+++L ++DL Sbjct: 1413 IPESFNVMIKELRSLCFNVDL 1433 >gi|183221354|ref|YP_001839350.1| DNA-directed RNA polymerase subunit beta [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|73917872|sp|Q9KK59|RPOB_LEPBI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699416|sp|B0SSI4|RPOB_LEPBP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|8132026|gb|AAF73184.1|AF150880_1 RNA polymerase beta subunit [Leptospira biflexa serovar Patoc] gi|167779776|gb|ABZ98074.1| DNA-directed RNA polymerase beta chain (RNAP beta subunit; Transcriptase beta chain) (RNA polymerase beta subunit) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1228 Score = 1039 bits (2686), Expect = 0.0, Method: Composition-based stats. Identities = 499/1381 (36%), Positives = 728/1381 (52%), Gaps = 183/1381 (13%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIA-PDERPNEGLQAAFKSVFPITAFSG 70 R R FGK ++ +P+LI VQK S+D FL + P +R N+GL+A F+ FPI + + Sbjct: 8 RNRVNFGKITDLNLLPNLIYVQKKSFDWFLQSEVKDPTKRLNQGLEAVFRESFPIESPNN 67 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 ++E+ Y PK D +C D ++AVPLK +RLI+ D +I+EQ + Sbjct: 68 DMVMEYGHYVLGEPKRDPQECKDTDSSFAVPLKAVIRLIIKD---------TGEIREQVV 118 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 YMGDLP+MT GTF+I G +R+VVSQLHRSPGI F +D+ + ++ R+IP +G Sbjct: 119 YMGDLPVMTDHGTFIINGAERVVVSQLHRSPGIFFSYDQV------RDTFSARVIPYRGS 172 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYPKIVYSQRGDFWCFPL 249 W++ E D+K I+ +IDR++K P T + A+GM + EE+L FY G Sbjct: 173 WLEFEMDNKGILVAKIDRKKKFPATLLVKAMGMGTNEEVLRLFYGSSKMKIAG----ANP 228 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 ++G + + +++++TGE ++++G K+ + L+E VK Sbjct: 229 KDLKRLIGRRTIADIINMETGEVMLDAGSKINEDNISILREMKVKE-------------- 274 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 + ++ +N + N L D D Sbjct: 275 ----------------------------------VDVIEFPKGKDNPVLINCLEKDGVND 300 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD--- 426 +DA+ + +MRPG+ ST AE+ LFF +DL VGR K+N + + P Sbjct: 301 YEDAVKKFHTIMRPGEPSTIENAEAELKRLFFSPKTFDLGIVGRYKINSKFEFNNPKEFS 360 Query: 427 --DVRHIRKEDIIAIIKILVDLRNGKG--TIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D R +RK+DII ++ LV L + DDID+LGNRR+RSVGE++ NQ +LG R+ Sbjct: 361 KADDRVLRKQDIIETVRYLVMLMSEAENYYPDDIDHLGNRRIRSVGELIANQLKLGFSRV 420 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER IKER++ + + PQ LI+ KP+ + + EFF SSQLSQ + N L+ +TH RRL+ Sbjct: 421 ERVIKERMTVQEPEQQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLN 480 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+ S++SFARVN YGFIETPY Sbjct: 481 ALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSFARVNDYGFIETPY 540 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +GKV V YL+A +EE Y+AQ+NS++DE G FT +L+ R G+ +I Sbjct: 541 RLVKNGKVQKQVEYLTADKEEYHYMAQSNSTVDEKGEFTSKLISTRHRGDFPFRSPAEIQ 600 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P QVVS++ +LIPFLE+DD+NR LMG NMQRQAVPLL EAPFVGTGME+ A Sbjct: 601 YMDLAPLQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLTEEAPFVGTGMEARAAYD 660 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 +G IVAK+ G+V +VDA + I+ + + + Y L+KF+++NQ TC NQ+P V Sbjct: 661 AGVCIVAKKDGVVSKVDATGVWIKEDQ------SKEIVHYPLIKFKKTNQGTCFNQKPNV 714 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + +T G ++ V +G +L+S+ + V Sbjct: 715 SM------------LHTTTGGKVSKVSKERVEVTTPNGEKETHELLLSDEVQFHAVVK-- 760 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 ++ +G + I D I+ G + G Sbjct: 761 -------EGQEVGIGAPVAGQIIKGEKYG-----DFGQILQKGTVLANGPS-------TD 801 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + +L A + + D L + V I R + +E Sbjct: 802 AGYLALGRNVLVAFMPWEGYNFEDAILISERIIKDDVFSSIHIEEFEIQ--ARETKLGQE 859 Query: 963 QIELLARDKDDE-QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 QI + D+ LD + R+ + + + G K T L+ + + Sbjct: 860 QITRDIPNLSDKAFRDLDESGVIRVGAEVKPGDILVGMVTPKGETDLTPEY-----KLLH 914 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 F + ++V+ + + +E + + K + GD++ GV +VKV+VA K Sbjct: 915 SIFGEKAKEVRDSSLRMPNGFEGTVIDI------KRYSRETGDELAAGVEEMVKVYVARK 968 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R + GDKMAGRHGNKG+V+R++ EDMP+++DG+PVDIVLNPLGVPSRMN+GQIFET L Sbjct: 969 RKLLVGDKMAGRHGNKGVVARVMAQEDMPYMEDGSPVDIVLNPLGVPSRMNLGQIFETQL 1028 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G+A LG ++ + D + GD++ + Sbjct: 1029 GFAAKKLGINFETPVFDGASEGDVNDFCKKAGLPENSKFQL------------------- 1069 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G TGE F V GYIYMLKL H Sbjct: 1070 ----------------------------YDG-------RTGEKFINQVFCGYIYMLKLAH 1094 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA++ LQE+LTIKSDD Sbjct: 1095 LVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASHTLQELLTIKSDD 1154 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 ++GR R+YE+IV G + + G PESFNVLV+E++ L L I +++S + +F+ Sbjct: 1155 MLGRARIYEAIVKGIHSIKPGIPESFNVLVQELRGLALDIIIKDSEGLEVDISDYEDEFS 1214 Query: 1382 K 1382 K Sbjct: 1215 K 1215 >gi|325124256|gb|ADY83779.1| DNA-directed RNA polymerase beta chain [Acinetobacter calcoaceticus PHEA-2] Length = 842 Score = 1036 bits (2680), Expect = 0.0, Method: Composition-based stats. Identities = 474/846 (56%), Positives = 625/846 (73%), Gaps = 8/846 (0%) Query: 526 EEHVNSLS---RITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGL 582 N LS + TH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL Sbjct: 1 MVQANYLSSWTKTTHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGL 60 Query: 583 VSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE 642 ++SL+ +A+ N +GF+ETPYRKV DG+VT+ V YLSA+EE IAQA+S++D+DG+ TE Sbjct: 61 INSLSVYAKANDFGFLETPYRKVVDGRVTDAVEYLSAIEEVGTVIAQADSAVDKDGNLTE 120 Query: 643 ELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP 702 E V R GE + +P EK+ +D S +QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP Sbjct: 121 EFVSVRHQGEFVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVP 180 Query: 703 LLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 L+A+ P VGTGME+ VA+ SG ++A R G +E VDA RIVIR E ++ +GVDIY Sbjct: 181 TLRADKPLVGTGMEANVARDSGVCVIANRGGAIEYVDASRIVIRVNEDEMIAGEAGVDIY 240 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 L+K+ RSNQNTC+NQ +V +GD+V R DI+ADGPSTD+G+LALG+NM VAFM W+GYN Sbjct: 241 NLIKYTRSNQNTCINQNIIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYN 300 Query: 823 FEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGII 882 +EDS+L+SER++ ED TSIHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ Sbjct: 301 YEDSILLSERVLQEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIV 360 Query: 883 CVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDV 942 +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG GTV+DV Sbjct: 361 YIGAEVTAGDILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDV 420 Query: 943 RIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 ++F R G++K++R++++E+ Q++ +D +E I + R++ +L GQ + G Sbjct: 421 QVFTRDGLEKDDRALAIEKAQLDAYRKDLKEEYKIFEEAARERVIRLLKGQESNGG-GST 479 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 K+ L +++S + DE + + ++V + + ++++F K K+ Sbjct: 480 KRGDKLVEEVLSGLELVDLLEIQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLAT 539 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++ GVL+VVKV++A+KR IQ GDKMAGRHGNKG+VS ILP EDMP +G PVDIVL Sbjct: 540 GDELTTGVLKVVKVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVL 599 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT-GSH 1181 NPLGVPSRMNVGQI ETHLG A GLG KI+ ++ + + + LR FL+K+ G Sbjct: 600 NPLGVPSRMNVGQILETHLGMAAKGLGDKIEKMLKEQRT---VLELREFLDKIYNKVGGE 656 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLT 1241 E + D VL ++ ++GVP++TPVFDGA+E I +L +A + +GQ++L+DG T Sbjct: 657 QEDLDSLTDAEVLALSGNLRAGVPLATPVFDGAEESQIKDLLELAGISRTGQTVLFDGRT 716 Query: 1242 GEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWC 1301 GE FDRPVTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 717 GEQFDRPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 776 Query: 1302 IQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361 ++AYGAAY LQEMLT+KSDDV GRTR+Y++IV GN + G PESFNVL KE+++LG++I Sbjct: 777 LEAYGAAYTLQEMLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINI 836 Query: 1362 DLENSR 1367 +L+N Sbjct: 837 ELKNGD 842 >gi|189911447|ref|YP_001963002.1| DNA-directed RNA polymerase subunit beta [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226699415|sp|B0SAG1|RPOB_LEPBA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|167776123|gb|ABZ94424.1| DNA-directed RNA polymerase, beta subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 1228 Score = 1036 bits (2680), Expect = 0.0, Method: Composition-based stats. Identities = 498/1381 (36%), Positives = 727/1381 (52%), Gaps = 183/1381 (13%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIA-PDERPNEGLQAAFKSVFPITAFSG 70 R R FGK ++ +P+LI VQK S+D FL + P +R N+GL+A F+ FPI + + Sbjct: 8 RNRVNFGKITDLNLLPNLIYVQKKSFDWFLQSEVKDPTKRLNQGLEAVFRESFPIESPNN 67 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 ++E+ Y PK D +C D ++AVPLK +RLI+ D +I+EQ + Sbjct: 68 DMVMEYGHYVLGEPKRDPQECKDTDSSFAVPLKAVIRLIIKD---------TGEIREQVV 118 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 YMGDLP+MT GTF+I G +R+VVSQLHRSPGI F +D+ + ++ R+IP +G Sbjct: 119 YMGDLPVMTDHGTFIINGAERVVVSQLHRSPGIFFSYDQV------RDTFSARVIPYRGS 172 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYPKIVYSQRGDFWCFPL 249 W++ E D+K I+ +IDR++ P T + A+GM + EE+L FY G Sbjct: 173 WLEFEMDNKGILVAKIDRKKNFPATLLVKAMGMGTNEEVLRLFYGSSKMKIAG----ANP 228 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 ++G + + +++++TGE ++++G K+ + L+E VK Sbjct: 229 KDLKRLIGRRTIADIINMETGEVMLDAGSKINEDNISILREMKVKE-------------- 274 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 + ++ +N + N L D D Sbjct: 275 ----------------------------------VDVIEFPKGKDNPVLINCLEKDGVND 300 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD--- 426 +DA+ + +MRPG+ ST AE+ LFF +DL VGR K+N + + P Sbjct: 301 YEDAVKKFHTIMRPGEPSTIENAEAELKRLFFSPKTFDLGIVGRYKINSKFEFNNPKEFS 360 Query: 427 --DVRHIRKEDIIAIIKILVDLRNGKG--TIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D R +RK+DII ++ LV L + DDID+LGNRR+RSVGE++ NQ +LG R+ Sbjct: 361 KADDRVLRKQDIIETVRYLVMLMSEAENYYPDDIDHLGNRRIRSVGELIANQLKLGFSRV 420 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER IKER++ + + PQ LI+ KP+ + + EFF SSQLSQ + N L+ +TH RRL+ Sbjct: 421 ERVIKERMTVQEPEQQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLN 480 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+ S++SFARVN YGFIETPY Sbjct: 481 ALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSFARVNDYGFIETPY 540 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +GKV V YL+A +EE Y+AQ+NS++DE G FT +L+ R G+ +I Sbjct: 541 RLVKNGKVQKQVEYLTADKEEYHYMAQSNSTVDEKGEFTSKLISTRHRGDFPFRSPAEIQ 600 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P QVVS++ +LIPFLE+DD+NR LMG NMQRQAVPLL EAPFVGTGME+ A Sbjct: 601 YMDLAPLQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLTEEAPFVGTGMEARAAYD 660 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 +G IVAK+ G+V +VDA + I+ + + + Y L+KF+++NQ TC NQ+P V Sbjct: 661 AGVCIVAKKDGVVSKVDATGVWIKEDQ------SKEIVHYPLIKFKKTNQGTCFNQKPNV 714 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + +T G ++ V +G +L+S+ + V Sbjct: 715 SM------------LHTTTGGKVSKVSKERVEVTTPNGEKETHELLLSDEVQFHAVVK-- 760 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 ++ +G + I D I+ G + G Sbjct: 761 -------EGQEVGIGAPVAGQIIKGEKYG-----DFGQILQKGTVLANGPS-------TD 801 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + +L A + + D L + V I R + +E Sbjct: 802 AGYLALGRNVLVAFMPWEGYNFEDAILISERIIKDDVFSSIHIEEFEIQ--ARETKLGQE 859 Query: 963 QIELLARDKDDE-QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 QI + D+ LD + R+ + + + G K T L+ + + Sbjct: 860 QITRDIPNLSDKAFRDLDESGVIRVGAEVKPGDILVGMVTPKGETDLTPEY-----KLLH 914 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 F + ++V+ + + +E + + K + GD++ GV +VKV+VA K Sbjct: 915 SIFGEKAKEVRDSSLRMPNGFEGTVIDI------KRYSRETGDELAAGVEEMVKVYVARK 968 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R + GDKMAGRHGNKG+V+R++ EDMP+++DG+PVDIVLNPLGVPSRMN+GQIFET L Sbjct: 969 RKLLVGDKMAGRHGNKGVVARVMAQEDMPYMEDGSPVDIVLNPLGVPSRMNLGQIFETQL 1028 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G+A LG ++ + D + GD++ + Sbjct: 1029 GFAAKKLGINFETPVFDGASEGDVNDFCKKAGLPENSKFQL------------------- 1069 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G TGE F V GYIYMLKL H Sbjct: 1070 ----------------------------YDG-------RTGEKFINQVFCGYIYMLKLAH 1094 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA++ LQE+LTIKSDD Sbjct: 1095 LVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASHTLQELLTIKSDD 1154 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 ++GR R+YE+IV G + + G PESFNVLV+E++ L L I +++S + +F+ Sbjct: 1155 MLGRARIYEAIVKGIHSIKPGIPESFNVLVQELRGLALDIIIKDSEGLEVDISDYEDEFS 1214 Query: 1382 K 1382 K Sbjct: 1215 K 1215 >gi|153830719|ref|ZP_01983386.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae 623-39] gi|148873799|gb|EDL71934.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae 623-39] Length = 816 Score = 1034 bits (2673), Expect = 0.0, Method: Composition-based stats. Identities = 478/832 (57%), Positives = 624/832 (75%), Gaps = 18/832 (2%) Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YG Sbjct: 1 HKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYG 60 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 F+ETPYR+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L Sbjct: 61 FLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLH 120 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 PRE +D++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E Sbjct: 121 PREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIE 180 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 VA SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+ Sbjct: 181 RNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCI 240 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP V G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V + Sbjct: 241 NQRPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQD 300 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FT+IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVG Sbjct: 301 DRFTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVG 360 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K++R+ Sbjct: 361 KVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRA 420 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEY 1016 + +E+ Q++ +D +E IL+ + +R+ +L + + Sbjct: 421 LEIEQMQLKEAKKDLTEEFQILEGGLLARVRSVLLAGG-------------YTEAKLGSI 467 Query: 1017 PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 R +W + +++E++Q +E L QY+ K+ + +F+ K KI GDD+ PGVL++VKV Sbjct: 468 ERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKV 527 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 ++A+KR IQ GDKMAGRHGNKG++S+I P EDMP+ ++G PVDIVLNPLGVPSRMN+GQI Sbjct: 528 YLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQI 587 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVL 1194 E HLG A G+G KI +I K +++ LR FL+KV G IS+ D+ V Sbjct: 588 LEVHLGLAAKGIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVR 644 Query: 1195 RVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYI 1254 +A ++G+PV+TPVFDGA E +I +ML +ADL SGQ L+DG TG+ F+RPVTVGY+ Sbjct: 645 TLAHNLRAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYM 704 Query: 1255 YMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEM 1314 YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEM Sbjct: 705 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 764 Query: 1315 LTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 LT+KSDDV GRT++Y++IV GN E G PESFNVL+KE+++LG++I+LE+ Sbjct: 765 LTVKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 816 >gi|330969829|gb|EGH69895.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. aceris str. M302273PT] Length = 935 Score = 1032 bits (2668), Expect = 0.0, Method: Composition-based stats. Identities = 502/939 (53%), Positives = 685/939 (72%), Gaps = 4/939 (0%) Query: 24 IDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 +D+P L+ +Q SY FL D+ + GL AAFKSVFPI ++SG A LE+V Y Sbjct: 1 MDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSVFPIISYSGNAALEYVGYRLGE 60 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 P FDV +C+ R +TYAVPL++ +RLI+FD + K+IKDIKEQ +YMG++PLMT++GT Sbjct: 61 PAFDVKECVLRGVTYAVPLRVKVRLIIFDK--ESSNKAIKDIKEQEVYMGEIPLMTENGT 118 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 F+I G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ RIIP +G W+D EFD KD + Sbjct: 119 FLINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVF 178 Query: 204 VRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSS 263 VRIDRRRK+P + L ALG +E++L FY V+ RG+ L L G Sbjct: 179 VRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRGENLSLELVPQRL-RGEIAVLD 237 Query: 264 LVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIE 323 ++D D G+ ++E G+++T+ + L++ G+K L + D + G A+ IV+ TGEI E Sbjct: 238 ILD-DKGKVIVEQGRRITARHINQLEKAGIKELEVPLDYVLGRTTAKVIVHPATGEIIAE 296 Query: 324 AGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRP 383 ++ + L +I +++ I LY + ++ ++ +TL D ++ +AL++IYR+MRP Sbjct: 297 CNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDSTSNQLEALVEIYRMMRP 356 Query: 384 GDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKIL 443 G+ T AE++FN LFF ++YDLS VGR+K N R+ + + KEDI+A++K L Sbjct: 357 GEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIEGSGVLCKEDIVAVLKTL 416 Query: 444 VDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL 503 VD+RNGKG +DDID+LGNRRVR VGEM +NQ+R+GL+R+ER++KER+S + + +MPQDL Sbjct: 417 VDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDL 476 Query: 504 INAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHP 563 INAKPV +AV EFF SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDVHP Sbjct: 477 INAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHP 536 Query: 564 THYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEE 623 THYGR+CP ET EG NIGL++SL ++AR N YGF+E+PYR V +G VT ++V+LSA+EE Sbjct: 537 THYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEGLVTEEIVFLSAIEEA 596 Query: 624 NRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLE 683 + IAQA++++++ +ELV R E + + +D SPKQVVS+AASLIPFLE Sbjct: 597 DHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVTLMDVSPKQVVSVAASLIPFLE 656 Query: 684 NDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRI 743 +DD+NR LMG NMQRQAVP L+A+ P VGTGME VA+ SG +VA+R G+++ VDA RI Sbjct: 657 HDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRI 716 Query: 744 VIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLG 803 V+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV GD V+R+DI+ADGPSTD+G Sbjct: 717 VVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDRVQRSDIMADGPSTDMG 776 Query: 804 DLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITR 863 +LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+IHI+E +ARDTKLGPEEIT Sbjct: 777 ELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITA 836 Query: 864 DIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVD 923 DIPNV E L +DE GI+ VGAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA D Sbjct: 837 DIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 896 Query: 924 VRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 V+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Sbjct: 897 VKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKS 935 >gi|124514450|gb|EAY55963.1| DNA-directed RNA polymerase, beta subunit [Leptospirillum rubarum] Length = 1718 Score = 1029 bits (2660), Expect = 0.0, Method: Composition-based stats. Identities = 544/1199 (45%), Positives = 749/1199 (62%), Gaps = 114/1199 (9%) Query: 217 FLMAL---GMDSEEI----LSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDT 269 FL L G+ SE+I + F P + F + +GAK + L+ D Sbjct: 588 FLRYLLSKGLSSEQITIALANRFLPYEEIVVQSKKRRFFV-----RIGAKATFKLIS-DD 641 Query: 270 GEQVIESGKKLTSGLLKSLKEKG-----------------------------VKFLGITS 300 GE ++ G +T + ++K G + Sbjct: 642 GEVLLAEGAVMTPEMASAIKSNGQAILVRGKNDEVSVSMQMESDILGEKLVLTSKDQVKP 701 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L + + G G+ + + ++ + +P++ V SV Sbjct: 702 EDLLSKVLLFPMGETRKGYPLRSVGESSEFEDIDLAKKGKHEILPLVTVSSVKMGELFWE 761 Query: 361 TLVTDKNKDRKD---ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 + K+ R + A+++IY+ +RPG+V A F FF++ +YDLS+VGR+K+N Sbjct: 762 LVDLGKHPHRVESDPAVIEIYKKIRPGEVPHVETARQFFEQTFFNTKRYDLSSVGRLKIN 821 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +L + + R + K D++ +I+ +V L KG +DDID+LGNRRVRSVGE+L+NQ+R+ Sbjct: 822 SKLGIKENLNNRLLTKNDVVEVIRYMVGLLENKGEVDDIDHLGNRRVRSVGELLENQFRV 881 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL+RMER+IKER++ D D+++ DLINAKPV + + EFF SSQLSQ + N L+ +TH Sbjct: 882 GLVRMERAIKERLNLGDPDAIISTDLINAKPVSAIIKEFFGSSQLSQFMDQTNPLAEVTH 941 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL +FARVN +GF Sbjct: 942 KRRLSALGPGGLTRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLATFARVNDFGF 1001 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 IE+P RKV DGKV +++YLSAM+ + IAQAN+ +DE G F E + R G+ + V Sbjct: 1002 IESPVRKVEDGKVLPEIIYLSAMDGDKYIIAQANTPVDETGKFIESHITARHKGDFVSVS 1061 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 +++ FID +P+Q+VS+A ++IPFLE++D+NR LMG NMQRQAVPLL+A AP VGTGME Sbjct: 1062 VDRVQFIDVAPQQIVSVATAMIPFLEHNDANRALMGSNMQRQAVPLLRASAPVVGTGMER 1121 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 +VA+ SG I A+ G V VD RI IR Y L+KFQRSNQNTC+N Sbjct: 1122 IVARDSGYVIYAEDDGQVTNVDGTRIAIRYQ------GHDKPKEYNLIKFQRSNQNTCLN 1175 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q+ L+ VG +V++ D+IADGPSTD GDLA+G+N+LVAFMPW GYNFED++L+SER++ +D Sbjct: 1176 QKALLAVGTKVKKGDVIADGPSTDRGDLAMGQNVLVAFMPWGGYNFEDAILVSERLIKDD 1235 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 +FTSIHIEEFE+ AR+TK G EEITRDIPN+SEE L+N+DE GII +GAEV PGDILVGK Sbjct: 1236 MFTSIHIEEFELEARETKQGKEEITRDIPNLSEEALRNLDESGIIRIGAEVKPGDILVGK 1295 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPK E+ +TPEE+LLRAIFG+K+ + +D SL VP+G+ G VVDVRI +R G++K E Sbjct: 1296 VTPKAETQLTPEERLLRAIFGDKSANWKDASLTVPAGIEGIVVDVRILSRKGVEKEEFPA 1355 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSS 1010 + + + +L + D+ L+ + ++ + L G+ +G KK L+ Sbjct: 1356 PMSNQDVTVLTKSYQDDLRELESSKNQKIRKFLIGKVIKEDILDSETGDVLLKKKRRLTQ 1415 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 +++ + S + D K Q + S++ + + ++ R +I +++ GD++PPGV Sbjct: 1416 EILEKL--SDLSIITLSDPKEQDELLSIERETKEKIEAIQLRHDERIGRLKRGDELPPGV 1473 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 L++VKV++AMKR + GDKMAGRHGNKG+VSRILP EDMPFL DGTPVDIVLNPLGVPSR Sbjct: 1474 LKLVKVYIAMKRKLSVGDKMAGRHGNKGVVSRILPMEDMPFLPDGTPVDIVLNPLGVPSR 1533 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MNVGQI ETHLGWA L + + D + +I Sbjct: 1534 MNVGQILETHLGWAGKMLDVHFATPVFDGASEAEIKEQLK-------------------- 1573 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 + L + Q++LYDG TGEPF+RPVT Sbjct: 1574 -----------------------------KAQLPESG-----QTVLYDGKTGEPFERPVT 1599 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG +YMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW +QAYGAA Sbjct: 1600 VGVMYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAAST 1659 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 LQE LT+KSDDV GR+R+YE+IV G + E G PESFNVL+KE+Q+L L I+L ++ K Sbjct: 1660 LQEFLTVKSDDVSGRSRMYEAIVRGENYLEPGLPESFNVLIKELQSLALDIELLKTKEK 1718 Score = 354 bits (908), Expect = 8e-95, Method: Composition-based stats. Identities = 137/555 (24%), Positives = 245/555 (44%), Gaps = 39/555 (7%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R FFG + +D+ DLIE+QK SYD FL +++ P++R + GLQ+AF SVFPI ++G Sbjct: 9 RHFFGLGQQYLDVQDLIEIQKKSYDRFLQLDVDPEQREDWGLQSAFLSVFPIEDYNGNIR 68 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-----------SI 122 ++F+ Y PK++ + + R +T+A PLKI +R+ V + ++ ++ Sbjct: 69 IDFLEYSLGEPKYNEREAIERGMTHAAPLKIKVRIAVLEKNKENDRPKSFVSPHIQDSTV 128 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K ++EQ IY+GDLPLMT GTF+I G +R+VVSQLHRSPG+ F HDK + ++G L+ Sbjct: 129 KTLREQEIYLGDLPLMTSKGTFIINGTERVVVSQLHRSPGVFFSHDKTKTRVAGTPLFTS 188 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-- 240 RIIP +G W+D E+D KD + VRIDR++K P T L ALG+ + I+ +Y Sbjct: 189 RIIPYRGSWVDFEYDPKDNLFVRIDRKKKFPATVMLKALGLTASNIIREYYSPETLFIEP 248 Query: 241 ------------------------RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIES 276 G + +DL ++ D+ E+ Sbjct: 249 GVPQIVAFYPFAPGESLPFQLRDHEGPIFREETLPSDLAELNRILKDRTDLTIRFHSSET 308 Query: 277 GKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEI 336 G +L +K + L I + + + + E ++ E + + ++S Sbjct: 309 GSELHISDVKVHSDSKNLGLFIPLNSILTSIKKTEYASPELHKLLEELNNSLKKRSEFFS 368 Query: 337 FH-SEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESM 395 + + L+ N + +T++ ++K ++ ++ V R ++S + Sbjct: 369 GELLNAKALLSLFELHSKANENLLHTVIPFQSKTKEFSVYQPMTVFRCTELSADAPIPFR 428 Query: 396 FNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDD 455 + + V +N R L ++VR + K I I +D Sbjct: 429 IVSRTAKEEGDRIRFVDETVLNEREPLSK-ENVRLLLKSKNIGTIHHRSKKFYSISLRED 487 Query: 456 IDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCE 515 + + ++ E ++Y ++ S + + +D + + + Sbjct: 488 KNQNLFTLLEALPEKEIDEYYAAEEILDPSDFTKTLVTPTQPLGSKDFDKNRKPLLQILF 547 Query: 516 FFCSSQLSQLEEHVN 530 +L +N Sbjct: 548 EKGVQKLEAYIVPLN 562 >gi|206602625|gb|EDZ39106.1| DNA-directed RNA polymerase, beta subunit [Leptospirillum sp. Group II '5-way CG'] Length = 1718 Score = 1026 bits (2652), Expect = 0.0, Method: Composition-based stats. Identities = 543/1199 (45%), Positives = 747/1199 (62%), Gaps = 114/1199 (9%) Query: 217 FLMAL---GMDSEEI----LSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDT 269 FL L G+ SE+I + F P + F + +GAK + L+ D Sbjct: 588 FLRYLLSKGLSSEQITIALANRFLPYEEIVLQSKKRRFYV-----RIGAKATFKLIS-DD 641 Query: 270 GEQVIESGKKLTSGLLKSLKEKGVKFLGI-----------------------------TS 300 GE ++ G +T + ++K G L Sbjct: 642 GEVLLTEGAVMTPEIASAIKSSGQAILVRGKNDEVSVSMQMESDMLGEKLVLTSKDQAKP 701 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L + + G G+ + + ++ + +P++ V S+ Sbjct: 702 EDLLSKVLLFPMGETRKGYPLRSVGESSEFEDIDLAKKGKHEILPLVTVSSIKMGELFWE 761 Query: 361 TLVTDKNKDRKD---ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 + K+ R + A+++IY+ +RPG+V A F FF++ +YDLS+VGR+K+N Sbjct: 762 LVDLGKHPHRVESDPAVIEIYKKIRPGEVPHVETARQFFEQTFFNTKRYDLSSVGRLKIN 821 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +L + + R + K D++ +I+ +V L KG +DDID+LGNRRVRSVGE+L+NQ+R+ Sbjct: 822 SKLGIKENLNNRLLTKNDVVEVIRYMVGLLENKGEVDDIDHLGNRRVRSVGELLENQFRV 881 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL+RMER+IKER++ D D+++ DLINAKPV + + EFF SSQLSQ + N L+ +TH Sbjct: 882 GLVRMERAIKERLNLGDPDAIISTDLINAKPVSAIIKEFFGSSQLSQFMDQTNPLAEVTH 941 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG+ R RAG E+RDVH +HYGRICP ET EG NIGL++SL +FARVN +GF Sbjct: 942 KRRLSALGPGGLTRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLATFARVNDFGF 1001 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 IE+P RKV DGKV +++YLSAM+ + IAQAN+ +DE G F E + R G+ + V Sbjct: 1002 IESPVRKVEDGKVLPEIIYLSAMDGDKYIIAQANTPVDETGKFIESHITARHKGDFVSVS 1061 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 +++ FID +P+Q+VS+A ++IPFLE++D+NR LMG NMQRQAVPLL+A AP VGTGME Sbjct: 1062 VDRVQFIDVAPQQIVSVATAMIPFLEHNDANRALMGSNMQRQAVPLLRASAPVVGTGMER 1121 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 +VA+ SG I A+ G V VD RI IR Y L+KFQRSNQNTC+N Sbjct: 1122 IVARDSGYVIYAEDDGQVTNVDGTRIAIRYQ------GHDKPTEYNLIKFQRSNQNTCLN 1175 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q+ L+ VG +V++ D+IADGPSTD GDLA+G+N+LVAFMPW GYNFED++L+SER++ +D Sbjct: 1176 QKALLAVGTKVKKGDVIADGPSTDRGDLAMGQNVLVAFMPWGGYNFEDAILVSERLIKDD 1235 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 +FTSIHIEEFE+ AR+TK G EEITRDIPN+SEE L+N+DE GII +GAEV PGDILVGK Sbjct: 1236 MFTSIHIEEFELEARETKQGKEEITRDIPNLSEEALRNLDESGIIRIGAEVKPGDILVGK 1295 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 +TPK E+ +TPEE+LLRAIFG+K+ + +D SL VP+G+ G VVDVRI +R G++K E Sbjct: 1296 VTPKAETQLTPEERLLRAIFGDKSANWKDASLTVPAGIEGIVVDVRILSRKGVEKEEFPA 1355 Query: 958 SVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSS 1010 + + + +L + D+ L+ ++ + L G+ +G KK L+ Sbjct: 1356 PMSNQDVTVLTKSYQDDLRELESTKNQKIRKFLIGKVIKEDILDSETGDVLLKKKRRLTQ 1415 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 +++ + S + D K Q + S++ + + ++ R +I +++ GD++PPGV Sbjct: 1416 EILEKL--SDLSIITLSDPKEQDELLSIERETKEKIEAIQLRHDERIGRLKRGDELPPGV 1473 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 L++VKV++AMKR + GDKMAGRHGNKG+VSRILP EDMPFL DGTPVDIVLNPLGVPSR Sbjct: 1474 LKLVKVYIAMKRKLSVGDKMAGRHGNKGVVSRILPTEDMPFLPDGTPVDIVLNPLGVPSR 1533 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MNVGQI ETHLGWA L + + D + +I Sbjct: 1534 MNVGQILETHLGWAGKMLDVHFATPVFDGASEAEIKEQLK-------------------- 1573 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 + L + Q++LYDG TGE F+RPVT Sbjct: 1574 -----------------------------KAQLPESG-----QTVLYDGKTGEAFERPVT 1599 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG +YMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW +QAYGAA Sbjct: 1600 VGVMYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAAST 1659 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 LQE LT+KSDDV GR+R+YE+IV G + E G PESFNVL+KE+Q+L L I+L ++ K Sbjct: 1660 LQEFLTVKSDDVSGRSRMYEAIVRGENYLEPGLPESFNVLIKELQSLALDIELLKTKEK 1718 Score = 350 bits (899), Expect = 7e-94, Method: Composition-based stats. Identities = 135/555 (24%), Positives = 243/555 (43%), Gaps = 39/555 (7%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R FFG + +D+ DLIE+QK SYD FL ++ P++R + GLQ+AF SVFPI ++G Sbjct: 9 RHFFGLGQQYLDVQDLIEIQKKSYDRFLQLDADPEQREDWGLQSAFLSVFPIEDYNGNIR 68 Query: 74 LEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-----------SI 122 ++F+ Y PK++ + + R +T+A PLKI +R+ V + ++ ++ Sbjct: 69 IDFLEYSLGEPKYNEREAIERGMTHAAPLKIKVRIAVLEKNKENDRPKSFVSPHIQDSTV 128 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 K ++EQ IY+GDLPLMT GTF+I G +R+VVSQLHRSPG+ F HDK + ++G L+ Sbjct: 129 KTLREQEIYLGDLPLMTSKGTFIINGTERVVVSQLHRSPGVFFSHDKTKTRVAGTPLFTS 188 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-- 240 RIIP +G W+D E+D KD + VRIDR++K P T L ALG+ + ++ +Y Sbjct: 189 RIIPYRGSWVDFEYDPKDNLFVRIDRKKKFPATVMLKALGLTASNVIREYYSPETLFIEP 248 Query: 241 ------------------------RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIES 276 G + +DL ++ D+ E+ Sbjct: 249 GVPQIVAFYPVVPGEALAFQLRDHEGPIFREETLPSDLAELNRILKDRTDLSIRFHNSET 308 Query: 277 GKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEI 336 G +L +K + L I + + + + E ++ E + + ++S Sbjct: 309 GSELHISDVKVHSDSKNLGLFIPLNSILTSTKKTEYASPELHKLLEELNNSLKKRSEFFS 368 Query: 337 FH-SEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESM 395 + + L+ N + +T++ + K ++ ++ V R ++S + Sbjct: 369 GELLNAKALLSLFELHSKANESLLHTVIPFQAKTKEFSVYQPMTVFRCTELSADAPIPFR 428 Query: 396 FNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDD 455 + + V +N R L ++VR + K I I +D Sbjct: 429 IVSRAAKEEGDRIRFVDETVLNEREPLSK-ENVRLLLKSKNIGTIHHRSKKFYSISLRED 487 Query: 456 IDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCE 515 + + ++ E ++Y ++ + + + +D + + + Sbjct: 488 KNQNLFTLLEALPEKEIDEYYAAEEILDPADFTKTLVTPTQPLGSKDFDKNRKPLLQILF 547 Query: 516 FFCSSQLSQLEEHVN 530 +L +N Sbjct: 548 EKGVQKLEAYIVPLN 562 >gi|121728867|ref|ZP_01681876.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae V52] gi|121628835|gb|EAX61295.1| DNA-directed RNA polymerase, beta subunit [Vibrio cholerae V52] Length = 979 Score = 1025 bits (2651), Expect = 0.0, Method: Composition-based stats. Identities = 503/950 (52%), Positives = 684/950 (72%), Gaps = 9/950 (0%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FG P+++DIP L+ +Q S++ F+ + GL+AAF+SV Sbjct: 35 MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 90 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI +++G + L++VSY P FDV +C R +TY+ PL++ LRL++FD D G ++ Sbjct: 91 FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 148 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT++GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 149 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 208 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++VRIDRRRK+P + L ALG S EIL F+ K+ + + Sbjct: 209 RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 268 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 L L G + + G+ +E G+++T+ ++ L++ GV F+ + + Sbjct: 269 QTLMMELVPERL-RGETATFDIE--ADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEY 325 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D VN TGE+ I A I ++L + + + + +L+ + +++ ++ TL Sbjct: 326 IVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETL 385 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF +++YDLSTVGR+K N + Sbjct: 386 RVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGR 445 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + ++ + + DII ++K L+ +RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 446 EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 505 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D+VMPQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 506 ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 565 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL++FAR N YGF+ETPY Sbjct: 566 ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 625 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V +G VT++V YLSA+EE IAQAN+ L E+G F +ELV R GE L PRE +D Sbjct: 626 RRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVD 685 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP L++E P VGTG+E VA Sbjct: 686 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 745 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 746 SGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 805 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V +D FT+I Sbjct: 806 MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 865 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKG Sbjct: 866 HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 925 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDK 952 E+ +TPEEKLLRAIFGEKA DV+DTSLRVP+ V+GTV+DV++F R G++K Sbjct: 926 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEK 975 >gi|116327516|ref|YP_797236.1| DNA-directed RNA polymerase subunit beta [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331871|ref|YP_801589.1| DNA-directed RNA polymerase subunit beta [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280394|sp|Q04QI9|RPOB_LEPBJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|122284684|sp|Q054E2|RPOB_LEPBL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|116120260|gb|ABJ78303.1| DNA-directed RNA polymerase, beta subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125560|gb|ABJ76831.1| DNA-directed RNA polymerase, beta subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1226 Score = 1025 bits (2650), Expect = 0.0, Method: Composition-based stats. Identities = 483/1380 (35%), Positives = 710/1380 (51%), Gaps = 182/1380 (13%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPD-ERPNEGLQAAFKSVFPITAFSG 70 R R FGK + +P+LI++QK S+D FL ++ + +R ++GL+A F+ FPI + + Sbjct: 7 RKRVNFGKITNLDYLPNLIQIQKRSFDWFLQADVKDETKRKHQGLEAVFRETFPIESPNN 66 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 ++E+ Y PK +C D T+A+PLK +RLI+ K +I+EQ++ Sbjct: 67 DMIMEYSHYILGEPKRSPQECKDTDATFAMPLKAVIRLII---------KETGEIREQTV 117 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 YMGDLP+MT+ GTF+I G +R+VVSQLHRSPGI F +D + +++ R+IP +G Sbjct: 118 YMGDLPVMTEQGTFIINGAERVVVSQLHRSPGIFFSYDME------RDVFSARVIPYRGS 171 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYPKIVYSQRGDFWCFPL 249 W++ E D+K I+ +IDR++K P T + +LG + EE+L FY G Sbjct: 172 WLEFEMDNKGILIAKIDRKKKFPATLLIKSLGHGTNEEVLRLFYSSKKEKIAGATSK--- 228 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 ++G + + +++++TGE ++E+G K+ + LKE VK Sbjct: 229 -DLKKILGRRTINDIINMETGEVMLEAGSKVNEDNISILKEMKVK--------------- 272 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 ++ ++ +N + N L D D Sbjct: 273 ---------------------------------EVELIEFPKGKDNPILINALEKDGVND 299 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP---- 425 +DA+L + +MR G+ ST A + LFF +DL VGR K+N + + P Sbjct: 300 YEDAILKFHSLMRQGEPSTIENATTELTRLFFSPKTFDLGEVGRYKINSKFEFNNPKEFS 359 Query: 426 -DDVRHIRKEDIIAIIKILVDLRNGKG--TIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + R +R DII ++ +++L + DDID+LGNRR+RSVGE++ NQ + G R+ Sbjct: 360 GEKARVLRPADIIETVRYILNLFSETENYYPDDIDHLGNRRIRSVGELISNQLKTGFSRV 419 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER IKER++ +I++ PQ LI+ KP+ + + EFF SSQLSQ + N L+ +TH RRL+ Sbjct: 420 ERVIKERMTVQEIETQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLN 479 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG+E+RDVH +HYGR+CP ET EG NIGL+ S++S+ARVN YGF+ETPY Sbjct: 480 ALGPGGLSRDRAGMEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSYARVNDYGFLETPY 539 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +GKVT + +L+A +EE YIAQA+ +DE G +L+ R G+ +I Sbjct: 540 RTVKNGKVTGQIEHLTADKEEYHYIAQASGVIDEKGELKNKLISTRHRGDFPFRNPSEIQ 599 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P QVVS++ +LIPFLE+DD+NR LMG NMQRQAVPLL+ EAPFVGTGME+ A Sbjct: 600 YMDLAPLQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLREEAPFVGTGMETRAAYD 659 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 S IV K G+V VDA IV+ D Y L KF+++NQ TC NQ+P+V Sbjct: 660 SRICIVNKHDGVVTSVDAETIVVER------KGGKESDTYSLTKFKKTNQGTCFNQKPIV 713 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 V + S + ++ L ++ G ++ S V + Sbjct: 714 GVVHSEINGKV--SKVSKEKIEVTGENGELKEYVLQIGSKQYAPIVSSGEEVKRGTTLAG 771 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 + E +DE G I V V V Sbjct: 772 QVVVGE--------------------------KLDEMGNILVKGTVLADGPAVDNGVLAL 805 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + E A+ + + +R S + + I R E+ Sbjct: 806 GRNVLAAFMPWEGYNFEDAILISERIVRDDVFSSIHIEEFEIQARETKLGPEQITRDIPN 865 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 + RD DE ++ + +IL G G L + E + Sbjct: 866 LSDKAFRDL-DETGVIRIGAEVKPGDILVGMVTPKGETDLTPEYKLLHSIFGEKAKD--- 921 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 V+ + + +E + + K + D++P GV +VKVFVA KR Sbjct: 922 --------VRDSSLRMPNGFEGTVIDI------KRFSRENQDELPAGVEEMVKVFVARKR 967 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 + GDKMAGRHGNKG+V+R++ EDMP+++DGTP+DIVLNPLGVPSRMN+GQIFET LG Sbjct: 968 KLLVGDKMAGRHGNKGVVARVMAEEDMPYMEDGTPLDIVLNPLGVPSRMNLGQIFETQLG 1027 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 +A LG ++ + D D+ + + Sbjct: 1028 FAASKLGISFETPVFDGAEESDVDNFCKEANLPLNSKFKL-------------------- 1067 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G++ G PF V GYIY+LKL H+ Sbjct: 1068 ---------------------------YDGRT-------GLPFMNEVFCGYIYILKLAHL 1093 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA++ LQE+LTIKSDD+ Sbjct: 1094 VEDKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASHTLQELLTIKSDDM 1153 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +GR R+YE+IV G + + G PESFNVLV+E++ L L I + +S + +++K Sbjct: 1154 LGRARIYEAIVKGIHSIKPGIPESFNVLVQELRGLALDIIITDSEGNTVDISDYEDEYSK 1213 >gi|24216119|ref|NP_713600.1| DNA-directed RNA polymerase subunit beta [Leptospira interrogans serovar Lai str. 56601] gi|41017737|sp|Q8F0S2|RPOB_LEPIN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|24197362|gb|AAN50618.1| DNA-directed RNA polymerase subunit beta [Leptospira interrogans serovar Lai str. 56601] Length = 1226 Score = 1022 bits (2643), Expect = 0.0, Method: Composition-based stats. Identities = 482/1380 (34%), Positives = 711/1380 (51%), Gaps = 182/1380 (13%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPD-ERPNEGLQAAFKSVFPITAFSG 70 R R FGK + +P+LI++QK S+D FL ++ + +R ++GL+A F+ FPI + + Sbjct: 7 RKRVNFGKITNLDYLPNLIQIQKRSFDWFLQADVKDETKRRHQGLEAVFRETFPIESPNN 66 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 ++E+ Y PK +C D T+A+PLK +RLI+ K +I+EQ++ Sbjct: 67 DMIMEYSHYILGEPKRSPQECKDTDATFAMPLKAVIRLII---------KETGEIREQTV 117 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 YMGDLP+MT+ GTF+I G +R+VVSQLHRSPGI F +D + +++ R+IP +G Sbjct: 118 YMGDLPVMTEQGTFIINGAERVVVSQLHRSPGIFFSYDME------RDVFSARVIPYRGS 171 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYPKIVYSQRGDFWCFPL 249 W++ E D+K I+ +IDR++K P T + +LG + EE+L FY G Sbjct: 172 WLEFEMDNKGILIAKIDRKKKFPATLLVKSLGHGTNEEVLRLFYSSKKEKIAGATSK--- 228 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 ++G + + +++++TGE ++E+G K+ + LKE VK Sbjct: 229 -DLKKILGRRTINDIINMETGEVMLEAGSKINEDNISILKEMKVK--------------- 272 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 ++ ++ +N + N L D D Sbjct: 273 ---------------------------------EVELIEFPKGKDNPILINALEKDGVND 299 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP---- 425 +DA+L + +MR G+ ST A + LFF +DL VGR K+N + + P Sbjct: 300 YEDAILKFHSLMRQGEPSTIENATTELTRLFFSPKTFDLGEVGRYKINSKFEFNNPKEFS 359 Query: 426 -DDVRHIRKEDIIAIIKILVDLRNGKG--TIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + R +R DII ++ +++L + DDID+LGNRR+RSVGE++ NQ + G R+ Sbjct: 360 GEKARVLRPADIIETVRYILNLFSETENYYPDDIDHLGNRRIRSVGELISNQLKTGFSRV 419 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER IKER++ +I++ PQ LI+ KP+ + + EFF SSQLSQ + N L+ +TH RRL+ Sbjct: 420 ERVIKERMTVQEIETQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLN 479 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG+E+RDVH +HYGR+CP ET EG NIGL+ S++S+ARVN YGF+ETPY Sbjct: 480 ALGPGGLSRDRAGMEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSYARVNDYGFLETPY 539 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +GKVT + +L+A +EE YIAQA+ +DE G +L+ R G+ +I Sbjct: 540 RTVKNGKVTGQIEHLTADKEEYHYIAQASGVIDEKGELKNKLISTRHRGDFPFRNPSEIQ 599 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P QVVS++ +LIPFLE+DD+NR LMG NMQRQAVPLL+ EAPFVGTGME+ A Sbjct: 600 YMDLAPLQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLREEAPFVGTGMETRAAYD 659 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 S IV K G+V VDA IV+ D Y+L KF+++NQ TC NQ+P+V Sbjct: 660 SRICIVNKHDGVVTSVDAENIVVER------KGGKESDTYQLTKFKKTNQGTCFNQKPIV 713 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 V + S + ++ L ++ G ++ + V + Sbjct: 714 GVVHSEINGKV--SKVSKEKIEVTGENGELKEYVLQIGSKQYSPIVSAGEEVKRGSTLAG 771 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 + E +DE G I V V V Sbjct: 772 QVVVGE--------------------------KLDEMGNILVKGTVLADGPAVDNGVLAL 805 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + E A+ + + +R S + + I R E+ Sbjct: 806 GRNVLAAFMPWEGYNFEDAILISERIVRDDVFSSIHIEEFEIQARETKLGPEQITRDIPN 865 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 + RD DE ++ + +IL G G L + E + Sbjct: 866 LSDKAFRDL-DETGVIRIGAEVKPGDILVGMVTPKGETDLTPEYKLLHSIFGEKAKD--- 921 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 V+ + + +E + + K + D++P GV +VKVFVA KR Sbjct: 922 --------VRDSSLRMPNGFEGTVIDI------KRFSRENQDELPAGVEEMVKVFVARKR 967 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 + GDKMAGRHGNKG+V+R++ EDMP+++DGTP+DIVLNPLGVPSRMN+GQIFET LG Sbjct: 968 KLLVGDKMAGRHGNKGVVARVMAEEDMPYMEDGTPLDIVLNPLGVPSRMNLGQIFETQLG 1027 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 +A LG ++ + D D+ + + Sbjct: 1028 FAASKLGISFETPVFDGAEESDVDNFCKEANLPLNSKFKL-------------------- 1067 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G++ G PF V GYIY+LKL H+ Sbjct: 1068 ---------------------------YDGRT-------GLPFMNEVFCGYIYILKLAHL 1093 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA++ LQE+LTIKSDD+ Sbjct: 1094 VEDKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASHTLQELLTIKSDDM 1153 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +GR R+YE+IV G + + G PESFNVLV+E++ L L I + +S + +++K Sbjct: 1154 LGRARIYEAIVKGIHSIKPGIPESFNVLVQELRGLALDIIITDSEGNTVDISDYEDEYSK 1213 >gi|45656647|ref|YP_000733.1| DNA-directed RNA polymerase subunit beta [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|73917873|sp|Q72UA8|RPOB_LEPIC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|45599883|gb|AAS69370.1| RNA polymerase beta subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 1226 Score = 1022 bits (2643), Expect = 0.0, Method: Composition-based stats. Identities = 482/1380 (34%), Positives = 711/1380 (51%), Gaps = 182/1380 (13%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPD-ERPNEGLQAAFKSVFPITAFSG 70 R R FGK + +P+LI++QK S+D FL ++ + +R ++GL+A F+ FPI + + Sbjct: 7 RKRVNFGKITNLDYLPNLIQIQKRSFDWFLQADVKDETKRRHQGLEAVFRETFPIESPNN 66 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 ++E+ Y PK +C D T+A+PLK +RLI+ K +I+EQ++ Sbjct: 67 DMIMEYSHYILGEPKRSPQECKDTDATFAMPLKAVIRLII---------KETGEIREQTV 117 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 YMGDLP+MT+ GTF+I G +R+VVSQLHRSPGI F +D + +++ R+IP +G Sbjct: 118 YMGDLPVMTEQGTFIINGAERVVVSQLHRSPGIFFSYDME------RDVFSARVIPYRGS 171 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYPKIVYSQRGDFWCFPL 249 W++ E D+K I+ +IDR++K P T + +LG + EE+L FY G Sbjct: 172 WLEFEMDNKGILIAKIDRKKKFPATLLVKSLGHGTNEEVLRLFYSSKKEKIAGATSK--- 228 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVA 309 ++G + + +++++TGE ++E+G K+ + LKE VK Sbjct: 229 -DLKKILGRRTINDIINMETGEVMLEAGSKINEDNISILKEMKVK--------------- 272 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKD 369 ++ ++ +N + N L D D Sbjct: 273 ---------------------------------EVELIEFPKGKDNPILINALEKDGVND 299 Query: 370 RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP---- 425 +DA+L + +MR G+ ST A + LFF +DL VGR K+N + + P Sbjct: 300 YEDAILKFHSLMRQGEPSTIENATTELTRLFFSPKTFDLGEVGRYKINSKFEFNNPKEFS 359 Query: 426 -DDVRHIRKEDIIAIIKILVDLRNGKG--TIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + R +R DII ++ +++L + DDID+LGNRR+RSVGE++ NQ + G R+ Sbjct: 360 GEKSRVLRPADIIETVRYILNLFSETENYYPDDIDHLGNRRIRSVGELISNQLKTGFSRV 419 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER IKER++ +I++ PQ LI+ KP+ + + EFF SSQLSQ + N L+ +TH RRL+ Sbjct: 420 ERVIKERMTVQEIETQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLN 479 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG+E+RDVH +HYGR+CP ET EG NIGL+ S++S+ARVN YGF+ETPY Sbjct: 480 ALGPGGLSRDRAGMEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSYARVNDYGFLETPY 539 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R V +GKVT + +L+A +EE YIAQA+ +DE G +L+ R G+ +I Sbjct: 540 RTVKNGKVTGQIEHLTADKEEYHYIAQASGVIDEKGELKNKLISTRHRGDFPFRNPSEIQ 599 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D +P QVVS++ +LIPFLE+DD+NR LMG NMQRQAVPLL+ EAPFVGTGME+ A Sbjct: 600 YMDLAPLQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLREEAPFVGTGMETRAAYD 659 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 S IV K G+V VDA IV+ D Y+L KF+++NQ TC NQ+P+V Sbjct: 660 SRICIVNKHDGVVTSVDAENIVVER------KGGKESDTYQLTKFKKTNQGTCFNQKPIV 713 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 V + S + ++ L ++ G ++ + V + Sbjct: 714 GVVHSEINGKV--SKVSKEKIEVTGENGELKEYVLQIGSKQYSPIVSAGEEVKRGSTLAG 771 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 + E +DE G I V V V Sbjct: 772 QVVVGE--------------------------KLDEMGNILVKGTVLADGPAVDNGVLAL 805 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + E A+ + + +R S + + I R E+ Sbjct: 806 GRNVLAAFMPWEGYNFEDAILISERIVRDDVFSSIHIEEFEIQARETKLGPEQITRDIPN 865 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 + RD DE ++ + +IL G G L + E + Sbjct: 866 LSDKAFRDL-DETGVIRIGAEVKPGDILVGMVTPKGETDLTPEYKLLHSIFGEKAKD--- 921 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 V+ + + +E + + K + D++P GV +VKVFVA KR Sbjct: 922 --------VRDSSLRMPNGFEGTVIDI------KRFSRENQDELPAGVEEMVKVFVARKR 967 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 + GDKMAGRHGNKG+V+R++ EDMP+++DGTP+DIVLNPLGVPSRMN+GQIFET LG Sbjct: 968 KLLVGDKMAGRHGNKGVVARVMAEEDMPYMEDGTPLDIVLNPLGVPSRMNLGQIFETQLG 1027 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 +A LG ++ + D D+ + + Sbjct: 1028 FAASKLGISFETPVFDGAEESDVDNFCKEANLPLNSKFKL-------------------- 1067 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G++ G PF V GYIY+LKL H+ Sbjct: 1068 ---------------------------YDGRT-------GLPFMNEVFCGYIYILKLAHL 1093 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQRLGEMEVW ++AYGA++ LQE+LTIKSDD+ Sbjct: 1094 VEDKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASHTLQELLTIKSDDM 1153 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +GR R+YE+IV G + + G PESFNVLV+E++ L L I + +S + +++K Sbjct: 1154 LGRARIYEAIVKGIHSIKPGIPESFNVLVQELRGLALDIIITDSEGNTVDISDYEDEYSK 1213 >gi|171319359|ref|ZP_02908469.1| RNA polymerase Rpb2 domain 6 [Burkholderia ambifaria MEX-5] gi|171095430|gb|EDT40402.1| RNA polymerase Rpb2 domain 6 [Burkholderia ambifaria MEX-5] Length = 813 Score = 1020 bits (2638), Expect = 0.0, Method: Composition-based stats. Identities = 448/816 (54%), Positives = 603/816 (73%), Gaps = 13/816 (1%) Query: 561 VHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAM 620 +HPTHYGR+CP ET EG NIGL++SL +A +N YGF+ETPYRKV D KVT+ + YLSA+ Sbjct: 1 MHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKVVDSKVTDQIDYLSAI 60 Query: 621 EEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIP 680 EE IAQAN+++DE+G +ELV R AGE ++V ++I ++D +P Q+VS+AASLIP Sbjct: 61 EEGRYMIAQANAAIDENGQLVDELVSSREAGETMMVTPDRIQYMDVAPSQIVSVAASLIP 120 Query: 681 FLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDA 740 FLE+DD+NR LMG NMQRQAVP L+ E P VGTG+E A SG + A R G+V+ VDA Sbjct: 121 FLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVDSGTTVQAFRGGVVDYVDA 180 Query: 741 IRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPST 800 RIVIR + + GVDIY L+K+ RSNQNT +NQRP+VK+GD+V R D++ADG ST Sbjct: 181 GRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKMGDKVSRGDVLADGAST 240 Query: 801 DLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEE 860 DLG+LALG+NML+AFMPW+GYNFEDS+LISE++V++D +TSIHIEE V+ARDTKLGPEE Sbjct: 241 DLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSIHIEELNVVARDTKLGPEE 300 Query: 861 ITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEK 920 ITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKGE+ +TPEEKLLRAIFGEK Sbjct: 301 ITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEK 360 Query: 921 AVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDR 980 A DV+DTSLRVPSG+SGTV+DV++F R GI +++R+ + ++++ D +D+ I++ Sbjct: 361 ASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELKRYRLDLNDQLRIVEG 420 Query: 981 NIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKV 1040 + + RL +L G+ A GPK K T + + + W+ + D++ +E++K Sbjct: 421 DAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWFDIRLADDEAAAQLEAIKN 480 Query: 1041 QYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIV 1100 E + + F+ K +K+ GD++PPGVL++VKV++A+KR +Q GDKMAGRHGNKG+V Sbjct: 481 SIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVV 540 Query: 1101 SRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK 1160 S+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQ+ E HLGWA GLG +I ++ + Sbjct: 541 SKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAAKGLGWRIGEML---Q 597 Query: 1161 ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAIN 1220 I +R+FL K+ E + + DD +L +A+ + GVP +TPVFDGA EE + Sbjct: 598 RQAKIEEMRAFLTKIYNDSGRKEDLESFTDDEILELAKNLREGVPFATPVFDGATEEEMG 657 Query: 1221 SMLRMA---------DLDES-GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYAR 1270 ML +A ++ S Q LYDG TGE F+R VT+GY++ LKL+H+V DK++AR Sbjct: 658 KMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLGYMHYLKLHHLVDDKMHAR 717 Query: 1271 STGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYE 1330 STG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQEMLT+KSDDV GRT+VYE Sbjct: 718 STGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRTKVYE 777 Query: 1331 SIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 ++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 778 NLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 813 >gi|241068588|ref|XP_002408478.1| DNA-directed RNA polymerase beta chain, putative [Ixodes scapularis] gi|215492466|gb|EEC02107.1| DNA-directed RNA polymerase beta chain, putative [Ixodes scapularis] Length = 986 Score = 1018 bits (2633), Expect = 0.0, Method: Composition-based stats. Identities = 564/988 (57%), Positives = 763/988 (77%), Gaps = 6/988 (0%) Query: 25 DIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDP 83 DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S A LEFV YEFD Sbjct: 2 DIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSSNIANLEFVKYEFDT 61 Query: 84 PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGT 143 PK+DV++C R L+YA PLK+TLRL ++D+DE TGA+ IK IKEQ +YMGD+PLMTK+GT Sbjct: 62 PKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGAREIKGIKEQEVYMGDIPLMTKNGT 121 Query: 144 FVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIH 203 F+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G W+D+EFDSKD+I+ Sbjct: 122 FIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRGSWLDLEFDSKDVIY 181 Query: 204 VRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ-RGDFWCFPLSAADLMVGAKVSS 262 RIDR+RK+ T+ L A+GM +EEI+ +Y + Y + W + +++S Sbjct: 182 FRIDRKRKLYATTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVKFIPQHI-TAHRLTS 240 Query: 263 SLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYI 322 LVD DTG ++++G+K+T L K +G+ + + + L G Y++ED+ + + E+ Sbjct: 241 DLVDADTGNVLLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYLSEDLRDPASDEVLA 300 Query: 323 EAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMR 382 + G++I L I +I+++ +L ++ + YIRNTL DKN+DR+ AL DI+RV+R Sbjct: 301 KIGEMITVDMLNVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQDREAALCDIFRVLR 359 Query: 383 PGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKI 442 PG+ + AES+F LFFD+++Y+LS VGR+KMN RL L+ ++V + +DI I+++ Sbjct: 360 PGEPANIEAAESLFYNLFFDAERYNLSEVGRIKMNSRLELNISEEVTVLTIDDIKNIVRV 419 Query: 443 LVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQD 502 LV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+RME+S+ ER+S+ D+D+VMP D Sbjct: 420 LVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSAGDVDTVMPHD 479 Query: 503 LINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVH 562 L+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG++R RAG E+RDVH Sbjct: 480 LVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRDRAGFEVRDVH 539 Query: 563 PTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEE 622 PTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V +G VT++VVYLSA+EE Sbjct: 540 PTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKNGHVTDEVVYLSAIEE 599 Query: 623 ENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDASPKQVVSIAASLIPF 681 I QANS +D+DG E + CR G ++V ++DFID +P QVVS+AASLIPF Sbjct: 600 GKYKIGQANSKVDKDGKLQGEFINCRVEGGNFVMVEPHEVDFIDVTPMQVVSVAASLIPF 659 Query: 682 LENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAI 741 LENDD+NR LMG NMQRQAVPL+K +APFVGTG+E VVAK SGA+++A GIVEQVD+ Sbjct: 660 LENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASVLALHDGIVEQVDSN 719 Query: 742 RIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTD 801 RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG V++NDIIADGPSTD Sbjct: 720 RIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHYVKKNDIIADGPSTD 778 Query: 802 LGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEI 861 G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEFEV+ARDT+LGPEEI Sbjct: 779 NGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEFEVIARDTRLGPEEI 838 Query: 862 TRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKA 921 TRDIPNVSEE L+++DE GII VGAEV GDILVGK+TPK ESP+TPEEKLLRAIFGEKA Sbjct: 839 TRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPITPEEKLLRAIFGEKA 898 Query: 922 VDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRN 981 D++D+SL VPSGVSGTVV+VR+F+R G++K++R+I++E++QIE LA+D+DDE I++ Sbjct: 899 FDIKDSSLYVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEKLAKDRDDELEIIEHF 958 Query: 982 IYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 ++S L ++L GQ ++GPK K ++ Sbjct: 959 VFSWLEKLLVGQVIINGPKQVKAGQTIT 986 >gi|313113553|ref|ZP_07799141.1| DNA-directed RNA polymerase, beta subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310624068|gb|EFQ07435.1| DNA-directed RNA polymerase, beta subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 1280 Score = 1017 bits (2629), Expect = 0.0, Method: Composition-based stats. Identities = 436/1392 (31%), Positives = 635/1392 (45%), Gaps = 196/1392 (14%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R F E+I +P+LIEVQK SY FL +EGL+ F + I ++G Sbjct: 11 KTERMSFSHIDEVISMPNLIEVQKNSYQWFL----------DEGLKEVFHDIGTIEDYTG 60 Query: 71 AAMLEFVSYEFD-PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 L FV + D PK+ + +C RD+TYA PL++T RL+ K ++K+Q Sbjct: 61 NLALSFVDFRLDKEPKYSIKECKERDVTYAAPLRVTARLL---------NKETGEVKDQE 111 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 I+MGD PLMT GTFVI G +R +VSQL RSPG+ + K + G LY+ + P++G Sbjct: 112 IFMGDFPLMTDAGTFVINGAERAIVSQLVRSPGVFYGDAKDKV---GNDLYSATMNPNRG 168 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYPKIVYSQRGDFWCFP 248 W++ E D+ D+ +VRID+ RK+PVT ALG+ + E+IL+ F + Sbjct: 169 AWLEYETDASDVFYVRIDKNRKLPVTVLCRALGLSTNEDILNFFGDDERILATLEKDTTK 228 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS------- 300 L+ + GE +ES + L + + G Sbjct: 229 NQEEGLL------EVYRKLRPGEPPTVESATSQINMLFFDPRRYDLSRFGRYKMNKKLSL 282 Query: 301 -DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + G AE++V TGEI IEAG I + E+ ++ + + + D + + Sbjct: 283 ARRITGQVAAENVVAPLTGEILIEAGAKITRELAEKADNAGVNLVVLKLDDPMKEES--- 339 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 + DA ++ ++ + + L SD + + R + Sbjct: 340 -RKIKVITNGCVDAQGFFSFDVKECGINERCSFDEIKKILDTTSDVEEQKEMLRRNHDQL 398 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 + R + DI+A I L L + GT DDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 399 IG-------RTVTVADILASINYLNGLGHNIGTTDDIDHLGNRRIRSVGELLQNQFRIGF 451 Query: 480 LRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 RMER I+ER++ S D + PQ LIN +PVV+A+ EFF SS LSQ + N L+ +TH Sbjct: 452 SRMERVIRERMTLQSQDQSVITPQALINIRPVVAAIKEFFGSSPLSQFMDQNNPLAELTH 511 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+S L S+A++N YGF Sbjct: 512 KRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLISYLASYAKINEYGF 571 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 +E PYRKV DE+G+ E++V Sbjct: 572 VEAPYRKVKKIY-------------------------DENGNLKEQVVT----------- 595 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 ++++++ A + +A + P E R + R+ +L+ +A V Sbjct: 596 -DEVEYMTADVEDEYVVAQANEPLDEGKHFIRPRVSA---RRRDEILEIDAEKVD---YM 648 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 V+ ++ +E D R ++ S QR V Sbjct: 649 DVSPRMMVSVATACIPFLENDDCNRALMGSN------------------MQRQAVPLMVT 690 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q+P+V G E + +TD G L +N + N Sbjct: 691 QQPIVATGMEYKA--------ATDSGTAVLAKND--GIVEKMDANH-------------- 726 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 + G E + I++ I+ VG V G +L Sbjct: 727 ------------VVVRNNKGELEDYPLVKFARSNAGTCINQRPIVEVGESVKAGQVLADG 774 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 ++ + L + + D L V V + + + + Sbjct: 775 P-AMRNGEISLGKNALIGFMTWEGYNYEDAVLLNEKIVREDVYTSIHIEEYETESRDTKL 833 Query: 958 SVER------EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 E E +D DE+ I+ + +IL G+ G L Sbjct: 834 GPEEITRDIPNVSEDALKDL-DERGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRA 892 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + E R E K+ + D++ PGV Sbjct: 893 IFGEKAR-----------------EVRDTSLRVPHGAYGIIVDVKVFTPENSDELQPGVR 935 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 VV+ ++A KR I GDKMAGRHGNKG+VSRILP EDMP+L DGTP+DIVLNPLGVPSRM Sbjct: 936 EVVRCYIAQKRKISVGDKMAGRHGNKGVVSRILPQEDMPYLPDGTPLDIVLNPLGVPSRM 995 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 N+GQ+ E +LG+A G K+ + + D DI ++ + + Sbjct: 996 NIGQVLEVNLGYAAKACGIKVMTPVFDSARENDIGDTFDTAREMWHGENAPAYPTKL--- 1052 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 P G I+ +LD G++ +YDG TGE FD VTV Sbjct: 1053 -----------------PKIMGEKGHIID--FSKIELDRDGKTTVYDGRTGEKFDNRVTV 1093 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY+Y LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1094 GYMYYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1153 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNS 1371 QE+LT+KSDDV GR + YE+IV G + G PESF V++KE+Q+LGL + +++ Sbjct: 1154 QEILTVKSDDVEGRVKTYEAIVKGEPIPQPGIPESFRVMLKELQSLGLDVVVQDKDGNEI 1213 Query: 1372 AKMEEIPDFNKC 1383 + D Sbjct: 1214 DMRQNFDDEETG 1225 >gi|150015036|ref|YP_001307290.1| DNA-directed RNA polymerase subunit beta [Clostridium beijerinckii NCIMB 8052] gi|189043852|sp|A6LPQ4|RPOB_CLOB8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|149901501|gb|ABR32334.1| DNA-directed RNA polymerase, beta subunit [Clostridium beijerinckii NCIMB 8052] Length = 1236 Score = 1016 bits (2626), Expect = 0.0, Method: Composition-based stats. Identities = 454/1388 (32%), Positives = 646/1388 (46%), Gaps = 229/1388 (16%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R FGK ++ ++P+LIEVQ SY+ FL EGL F + PIT F+G Sbjct: 9 KRTRMSFGKVNDVTEMPNLIEVQLDSYEWFLR----------EGLHEVFDDINPITNFTG 58 Query: 71 AAMLEFVSYEFDPP--KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +LEFV Y+ D K+ V++C RD TYA PLK+++RL +IKEQ Sbjct: 59 NLVLEFVDYKLDMENIKYSVEECKERDATYAAPLKVSIRL---------QNNETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTFVI G +R++VSQL RSPG+++++ + SGK LY+ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFVINGAERVIVSQLVRSPGVYYNYSIDK---SGKKLYSSTVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ E DS D+I+VRID+ RK+ ++ A+G+ S+ E+L F + + + Sbjct: 167 GAWLEYETDSNDVIYVRIDKTRKLSISILARAMGLGSDQELLDFFGEEERFRASIEKDNT 226 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD----- 301 L+ K + GE ++S L L K + +G Sbjct: 227 KTKEEALLEIYK------RLRPGEPPTVDSAISLIDTLFFDAKRYDLSRVGRYKFNKKLA 280 Query: 302 ---CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A DIVN +TGEI +E G I EEI ++ ++ + +L D V I Sbjct: 281 LNLRIANQVAATDIVNPQTGEIMVEKGQKISRLVAEEIQNAGVKSVDVLIEDKVIR--VI 338 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 N V K + D + ++ + + + + + + ++ Sbjct: 339 SNNFVDLKKQVSFD-----ISDLGIKELVHYPTLKEILDN-------FSDEASIKEEIKK 386 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 ++ P +HI ++DI A I + L G G +DDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 387 NISKLIP---KHIIRDDIFATISYELGLTYGIGYVDDIDHLGNRRLRSVGELLQNQFRIG 443 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L RMER +KER++ D +++ PQ LIN +PV +A+ EFF SSQLSQ + N LS +TH Sbjct: 444 LSRMERVVKERMTIQDQEAITPQMLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHK 503 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +FA+VN YGFI Sbjct: 504 RRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFAKVNEYGFI 563 Query: 599 ETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ETPYR V A +E + A Sbjct: 564 ETPYRIVDKENG-------RATDEIRYFTA------------------------------ 586 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 + IA + P EN + + + + + + Sbjct: 587 --------DEEDQCLIAEAKEPMDENGHFINKKVRVRHLEDILVVPTTDVDLIDVSARQI 638 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 ++ +E DA R ++ S QR Q Sbjct: 639 ------VSVATAMIPFLENDDASRALMGSN------------------MQRQAVPLLSPQ 674 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 P+V G E + + D G L +N V + SE V D Sbjct: 675 APIVGTGIEFKA--------AVDSGVLPKAKNAGVV----------TYVSGSEIRVKRDS 716 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 + + + + + G R I + E KN +I G + G+I +GK Sbjct: 717 DGGTDVYKL-LKFKRSNSGTCINQRPIVDTGEIVYKN----QVIADGPSTDLGEIALGKN 771 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSIS 958 G E A+ + + +R S + + R E Sbjct: 772 IRMGFITWEGYNY-------EDAMLISEELVREDVFTSMHIEEYECEARDTKLGPEEITR 824 Query: 959 VEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPR 1018 + +D DD I+ R +IL G+ G L + E R Sbjct: 825 DIPNVSDDALKDVDDR-GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR 883 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 E K+ + GD++ PGV +V+ ++ Sbjct: 884 -----------------EVRDTSLRVPHGEAGIIVDIKVFTRENGDELNPGVNELVRCYI 926 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A KR I GDKMAGRHGNKG++SRILP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E Sbjct: 927 AQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLE 986 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 HLGWA LG I + + D +I+ Sbjct: 987 VHLGWAASHLGWHIATPVFDGATQPEITECMIKA-------------------------- 1020 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 G E+A ++ILYDG TGEPFD PVTVG +Y+LK Sbjct: 1021 --------------GFREDA--------------KTILYDGRTGEPFDNPVTVGIMYILK 1052 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+K Sbjct: 1053 LHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVK 1112 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 SDDVVGR + YE+IV G + E G PESF VL+KE+QAL L I + N ++E Sbjct: 1113 SDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDIKVLN-DEHEEVTLKEFV 1171 Query: 1379 DFNKCELK 1386 D + L+ Sbjct: 1172 DEDMANLE 1179 >gi|295101752|emb|CBK99297.1| DNA-directed RNA polymerase subunit beta [Faecalibacterium prausnitzii L2-6] Length = 1275 Score = 1014 bits (2621), Expect = 0.0, Method: Composition-based stats. Identities = 429/1392 (30%), Positives = 625/1392 (44%), Gaps = 202/1392 (14%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R F E+I +P+LIEVQK SY FL +EGL+ F + I ++G Sbjct: 11 KTERMSFSHIDEVISMPNLIEVQKNSYQWFL----------DEGLKEVFHDIGTIEDYTG 60 Query: 71 AAMLEFVSYEFD-PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 L FV + D PK+ + +C RD+TYA PL++T RL+ K ++K+Q Sbjct: 61 NLALSFVDFRLDKEPKYSIKECKERDVTYAAPLRVTARLL---------NKETGEVKDQE 111 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 I+MGD PLMT GTFVI G +R +VSQL RSPG+ + HD + G LY+ + P++G Sbjct: 112 IFMGDFPLMTDAGTFVINGAERAIVSQLVRSPGVFYGHDHDKV---GNDLYSATMNPNRG 168 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYPKIVYSQRGDFWCFP 248 W++ E D+ ++ +VRID+ RK+PVT ALG+ S E+IL+ F + Sbjct: 169 AWLEYETDASNVFYVRIDKNRKLPVTVLCRALGLSSNEDILNYFGEDERILATLEKDTTK 228 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS------- 300 + L+ + GE +ES + L + + G Sbjct: 229 NTEEGLL------EVYRKLRPGEPPTVESATSQLNMLFFDPRRYDLSRFGRYKMNKKLSL 282 Query: 301 -DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + AE++V TGE+ IE I + E ++ + I +L ++ Sbjct: 283 ARRIMNHVAAENVVAPLTGELLIEKDAKITRQLAEAADNAGVN-IVVLNIEGKKVKVITN 341 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 + I ++ S + +GR Sbjct: 342 GCVDAQGFFSFDVKECGINERCSFEEIRKILDTTSDVEEQKELLRRNHDQLIGR------ 395 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 + DI++ I L L +G GT DDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 396 ----------TVTVTDILSSINYLNGLGHGIGTTDDIDHLGNRRIRSVGELLQNQFRIGF 445 Query: 480 LRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 RMER I+ER++ S D + PQ LIN +PVV+A+ EFF SS LSQ + N L+ +TH Sbjct: 446 SRMERVIRERMTLQSQDQSVITPQALINIRPVVAAIKEFFGSSPLSQFMDQNNPLAELTH 505 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+S L S+A++N YGF Sbjct: 506 KRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLISYLASYAKINEYGF 565 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 +E PYRKV DE G +++V Sbjct: 566 VEAPYRKVKKTY-------------------------DEKGRLIDQVVT----------- 589 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 ++++++ A + +A + P E R + R+ +L+ +A V Sbjct: 590 -DEVEYMTADVEDEYVVAQANEPLDETKHFKRARVSA---RRRDDILEIDAEKVD---YM 642 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 V+ ++ +E D R ++ S QR V Sbjct: 643 DVSPRMMVSVATACIPFLENDDCNRALMGSN------------------MQRQAVPLMVT 684 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q+P+V G E + +TD G L +N + +V + Sbjct: 685 QQPIVATGMEYKA--------ATDSGTAVLAKN--------------------DGIVEKV 716 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 + G + + I++ I+ VG V G +L Sbjct: 717 DADHV--------EVRNAQGAVDNYSLVKFARSNAGTCINQRPIVEVGENVKAGQVLADG 768 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 ++ + L + + D L V V + + + + Sbjct: 769 P-AMRNGEISLGKNALIGFMTWEGYNYEDAVLLNEKIVREDVYTSIHIEEYETESRDTKL 827 Query: 958 SVER------EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 E E +D DE+ I+ + +IL G+ G L Sbjct: 828 GPEEITRDIPNVSEDALKDL-DERGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRA 886 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + E R E K+ + D++ PGV Sbjct: 887 IFGEKAR-----------------EVRDTSLRVPHGEYGIIVDVKVFTPENSDELQPGVR 929 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 VV+ ++A KR I GDKMAGRHGNKG+VSRILP EDMP+L DGTP+DIVLNPLGVPSRM Sbjct: 930 EVVRCYIAQKRKISVGDKMAGRHGNKGVVSRILPQEDMPYLPDGTPLDIVLNPLGVPSRM 989 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 N+GQ+ E +LG+A G K+ + + D DI ++ + + Sbjct: 990 NIGQVLEVNLGYAAKACGIKVMTPVFDSAREADIGDTFDTAREMWHGENAPAYPTKL--- 1046 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 P G I+ +LD G++ +YDG TGE FD VTV Sbjct: 1047 -----------------PKLMGEKGHIID--FSKIELDRDGKTTVYDGRTGEKFDNRVTV 1087 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY+Y LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1088 GYMYYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1147 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNS 1371 QE+LT+KSDDV GR + YE+IV G + G PESF V++KE+Q+LGL + +++ Sbjct: 1148 QEILTVKSDDVEGRVKTYEAIVKGEPIPQPGIPESFRVMLKELQSLGLDVVVQDKEGNEI 1207 Query: 1372 AKMEEIPDFNKC 1383 + D Sbjct: 1208 DMRQNFDDEETG 1219 >gi|294627834|ref|ZP_06706413.1| DNA-directed RNA polymerase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292597748|gb|EFF41906.1| DNA-directed RNA polymerase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 980 Score = 1010 bits (2612), Expect = 0.0, Method: Composition-based stats. Identities = 493/974 (50%), Positives = 681/974 (69%), Gaps = 27/974 (2%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 F R+RK FGK I+++P L+ +Q SY FL ++ P++R + GL AA KSVF Sbjct: 3 SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHAALKSVF 62 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI+++SG A LE+V Y+ P FD +C R ++Y PL++T+RL+++D + T K+IK Sbjct: 63 PISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST--KAIK 120 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KEQ +Y+G++PLMT +GTF++ G +R++VSQLHRSPG+ FDHD+G+ SGKLLY+ R Sbjct: 121 YVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 180 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGD 243 IIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EE+L+ F+ + D Sbjct: 181 IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD 240 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCL 303 + + G ++ L D D + ++E+GK++T+ +K L+ GV L + D L Sbjct: 241 EGVQLELVPERLRGETLNFDLADGD--KVIVEAGKRITARHVKQLEAAGVAALAVPDDYL 298 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ D+V+G TGE+ A D I+E L + + + L+V+ ++ Y+ NTL Sbjct: 299 VGRILSHDVVDGSTGELLANANDEINEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLR 358 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K + +AL++IYR+MRPG+ T A+++F+ LFF ++YDLSTVGR+K N R+ Sbjct: 359 IDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRK 418 Query: 424 TPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDIDNLGN 461 + + A +IK+L ++RNG+G +DDID+LGN Sbjct: 419 DVLGESVLYDKKYFAERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHLGN 478 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 RRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EFF SSQ Sbjct: 479 RRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQ 538 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 LSQ + N LS +TH RR+SALG GG+ R RAG E+RDVHPTHYGR+C ET EG NIG Sbjct: 539 LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 598 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++SL FAR N YGF+ETPYRKV DGKV++DV YLSA+EE IAQAN+ D T Sbjct: 599 LINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLT 658 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 E+ V CR GE +L P ++ F+D SP Q VS+AA+L+PFLE+DD+NR LMG NMQRQAV Sbjct: 659 EQFVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 718 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVD 760 P L+++ P VGTG+E VA+ SG + A R G++EQ+DA RIV++ E + +GVD Sbjct: 719 PTLRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVD 778 Query: 761 IYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 IY L+K+ RSNQNTC+NQRPLV VGD + R D++ADGPSTD+G+LALG+NML+AFMPW+G Sbjct: 779 IYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNG 838 Query: 821 YNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECG 880 YNFEDS+L+SER+V ED +T+IHIEE +ARDTKLGPEEI+ DIPNVSE+ L +DE G Sbjct: 839 YNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESG 898 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +GAEV GDI+VGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G++GTV+ Sbjct: 899 VVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMTGTVI 958 Query: 941 DVRIFNRHGIDKNE 954 +V++F K + Sbjct: 959 EVQVFTPRRHRKRQ 972 >gi|261415670|ref|YP_003249353.1| DNA-directed RNA polymerase, beta subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372126|gb|ACX74871.1| DNA-directed RNA polymerase, beta subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328065|gb|ADL27266.1| DNA-directed RNA polymerase, beta subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1429 Score = 1008 bits (2607), Expect = 0.0, Method: Composition-based stats. Identities = 485/1471 (32%), Positives = 737/1471 (50%), Gaps = 169/1471 (11%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 RK + N +++P LIEVQKASY+ FL +I ++R N GL+ F+ +FPIT Sbjct: 3 TERKSYSSNKFHLELPYLIEVQKASYEQFLQKDIPQEKRMNVGLERVFRDIFPITDDKDL 62 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 L++ Y F PK+ + +C R LTY++ L TL L VF+ D +K ++IK + Sbjct: 63 YSLKYEGYYFGIPKYSIPECRERGLTYSMELFATLSLQVFEKDGE-ESKLKEEIK-NDVL 120 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 + DLP+MT++GTF+I G +R+VVSQLHRSPG+ FD + +G+ Y RIIP +G W Sbjct: 121 VCDLPIMTENGTFIINGAERVVVSQLHRSPGVSFDEEM---QPNGRSDYKSRIIPHRGAW 177 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD------------SEEI------LSTFY 233 ++ + DI+++ IDR++K+ T+ L +G + ++EI + F Sbjct: 178 VEFNTEG-DILYLIIDRKKKIAATAMLRCIGFETTQDILNLFYKKTDEIVLDDAAFNDFD 236 Query: 234 PKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDT---------GEQVIESGKKLTSGL 284 + V + + + +++++D + + S ++ + Sbjct: 237 KEGVCTLINRIIFNDVVDEETGEIILEANTVIDDKKLERLRESSVEKITVLSKEEDNLLI 296 Query: 285 LKSLKEKGVK--FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIF----- 337 +L K + + E+ N +T E Y + + D + Sbjct: 297 HYTLAADKTKSREDALKAVYSVTHQQQEEAPNLQTAERYFDELFLNDPHKYDLGEVGRYR 356 Query: 338 -HSEIRDIPIL--------YVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVST 388 ++++ IL D VN T +T D + + + + T Sbjct: 357 LNAKVYTAAILAKVKEVAERFDRVNEFKMPSVTQMTMSKTDFLAIIEYMVGLFNGDEGYT 416 Query: 389 FSVAESMFNFLFFDSDKYDLSTVG------RVKMNMRLNLDTPDDVRHIRKEDIIAIIKI 442 + + N + + + L+L + ++ R+ ++ Sbjct: 417 LDDIDHLGNRRTRSVGELLAGQISVGLSRMSRVIRENLSLHSEEEQTTPRELVNTRMVST 476 Query: 443 LVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG-----LLRMERSIKERISSVDIDS 497 +V G+ + + N + + G E + Sbjct: 477 VVQAFFGQSQLSQFMDQMNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHYTHYGRLCP 536 Query: 498 VMPQDLINAKPVVSAVCEFFCSS-----------QLSQLEE-HVNSLSRITHTRRLSALG 545 + + N + S + L + ++ N Sbjct: 537 IETPEGPNIGLINSLASYAVVNHFGFIETPYRIVGLVEFKDAQGNKCYFPEEKWHFGIFK 596 Query: 546 -----------------QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 + R R++ ++ + ++G+ + Sbjct: 597 GFVHDPHLFVELELTQKEIDTVRLNLDNRQRELFEGFVNKVFQLKDADGNVSYSKNGFAL 656 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEE---LV 645 +++ V + V++ + YL+A EE++ +A A++ LDE+ F + V Sbjct: 657 DDFDGTPDYVQVG--DVVEQIVSDYISYLTADEEDSFKVAPASTELDENNRFKGDMDGYV 714 Query: 646 FCRCAGEEILVPR-----------EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 R E + + E+ID +D +P Q+VS+AA LIPFLE+DD+NR LMG Sbjct: 715 IVRDKSEYPHLMKQDSIAIGDTETERIDLMDVAPMQIVSVAAGLIPFLEHDDANRALMGS 774 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV------ 748 NMQRQAVPLL+AEAP VGTG+E A SG + AK G V VDA I ++ Sbjct: 775 NMQRQAVPLLRAEAPVVGTGLERRAALDSGTVVRAKHDGKVTFVDARNITVQRGKMVNGV 834 Query: 749 --------EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPST 800 E +D Y L KF+RSNQ++C+NQ+P+V VGD V D++ADG ST Sbjct: 835 FEPLTGLGENYEFLGKDPIDEYTLRKFERSNQDSCINQKPIVNVGDFVEVGDVLADGVST 894 Query: 801 DLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEE 860 D G+LALG+N+L+ F+PW+GYN+ED+++ISE + +D FTSIHIEE+E+ RDTK GPEE Sbjct: 895 DHGELALGKNILIGFLPWNGYNYEDAVIISEELAIKDTFTSIHIEEYEMEVRDTKRGPEE 954 Query: 861 ITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEK 920 +TR+IPNV E+ L+N+DE G+I VGAEV P DILVGK+TPKGE+ +TPEE+LLRAIFGEK Sbjct: 955 LTREIPNVGEDALRNLDENGVIRVGAEVGPDDILVGKVTPKGETELTPEERLLRAIFGEK 1014 Query: 921 AVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDR 980 A DVRD+SL+ P G+ G V++ RIF++ + S ++E IE + ++ + + Sbjct: 1015 AGDVRDSSLKAPPGMKGVVLETRIFSKKDKADKK-SKEKDQETIEEIRQNFQSQIDRIKD 1073 Query: 981 NIYSRLMEILCGQNAVSGPKGFKKSTVLSSD---------LISEYPRSQWWQFAVQDEKV 1031 L ++L G++A ++ LI S F V D+ + Sbjct: 1074 ACREHLFDLLAGKSAGKVMDNETHELLIREGQTYNEQNLRLIDVTKVSPLSTFVVDDDDL 1133 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 Q V SL + + L + +I+K+ GD++ PGVL+ VKV++A KR + GDKMA Sbjct: 1134 QDKVLSLVLVARDNLDTLTRTMEKEIDKVTKGDELKPGVLKSVKVYIAKKRCLSIGDKMA 1193 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG+VSRI+P EDMPF +DG P+ I+LNPLGVPSRMN+GQ+ E HLGWA LG K Sbjct: 1194 GRHGNKGVVSRIVPVEDMPFTEDGRPLQILLNPLGVPSRMNIGQVLEVHLGWAAKTLGFK 1253 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 + + + D DI LEK D D++ ++ Sbjct: 1254 VTTPVFDGAKFEDIC---KELEKAYQKNPIVNYEMDPDNNKII----------------- 1293 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 G++ LYDG TGE PVT+GY+Y LKL H+V DK++ARS Sbjct: 1294 --------------------GKAKLYDGKTGEALLNPVTIGYMYYLKLGHLVDDKIHARS 1333 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 GSY+LVTQQPLGGKS GGQR GEMEVW ++AYGAAY LQE+LT+KSDDV GR++VY++ Sbjct: 1334 IGSYALVTQQPLGGKSQFGGQRFGEMEVWAMEAYGAAYTLQELLTVKSDDVQGRSKVYDA 1393 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 IV G +T + G PESFNV+++E+ +LGL I+ Sbjct: 1394 IVKGQNTPKPGIPESFNVMIREVHSLGLDIE 1424 >gi|160945277|ref|ZP_02092503.1| hypothetical protein FAEPRAM212_02796 [Faecalibacterium prausnitzii M21/2] gi|158443008|gb|EDP20013.1| hypothetical protein FAEPRAM212_02796 [Faecalibacterium prausnitzii M21/2] gi|295105510|emb|CBL03054.1| DNA-directed RNA polymerase subunit beta [Faecalibacterium prausnitzii SL3/3] Length = 1287 Score = 999 bits (2583), Expect = 0.0, Method: Composition-based stats. Identities = 428/1392 (30%), Positives = 628/1392 (45%), Gaps = 188/1392 (13%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R F E+I +P+LIEVQK SY FL +EGL+ F + I ++G Sbjct: 11 KTERMSFSHIDEVISMPNLIEVQKNSYQWFL----------DEGLKEVFHDIGTIEDYTG 60 Query: 71 AAMLEFVSYEFD-PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 L FV + D PK+ + +C RD+T+A PL++T RL+ K ++K+Q Sbjct: 61 NLALSFVDFRLDKEPKYSIKECKERDVTFAAPLRVTARLL---------NKETGEVKDQE 111 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 I+MGD PLMT GTFVI G +R +VSQL RSPG+ + H K + G LY+ + P++G Sbjct: 112 IFMGDFPLMTDAGTFVINGAERAIVSQLVRSPGVFYGHAKDKV---GNDLYSATMNPNRG 168 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYPKIVYSQRGDFWCFP 248 W++ E D+ ++ +VRID+ RK+PVT ALG+ S E+IL+ F + Sbjct: 169 AWLEYETDAANVFYVRIDKNRKLPVTVLCRALGLSSNEDILNYFGEDERILATLEKDTTK 228 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS------- 300 L+ + GE +ES L + + G Sbjct: 229 NREEGLL------EVYRKLRPGEPPTVESATSQIDMLFFDPRRYDLSRFGRYKMNKKLSL 282 Query: 301 -DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + AE++V+ TGEI +EA ID K E+I + + + +L +D + + Sbjct: 283 ARRIMDHVAAENVVDPFTGEILVEADKKIDRKLAEQIDAAGVNLV-VLKIDDPMKDQPHK 341 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 ++T+ D + + Y + DV + E D ++ M Sbjct: 342 VKVITNGCVDAQAIIDSYYPAFKGVDVKECGINERCCLK--ELRKILDNASSAEEVMESL 399 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 R + +DI++ I L L G GT DDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 400 KKDHDLLIGRTVTIDDILSSINYLNGLGYGIGTTDDIDHLGNRRIRSVGELLQNQFRIGF 459 Query: 480 LRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 RMER I+ER++ S D + PQ LIN +PVV+A+ EFF SS LSQ + N L+ +TH Sbjct: 460 SRMERVIRERMTLQSQDQSVITPQALINIRPVVAAIKEFFGSSPLSQFMDQNNPLAELTH 519 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+S L S+A++N Sbjct: 520 KRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLISYLASYAKIN---- 575 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 E A + ++ V Sbjct: 576 ------------------------EYGFVEAP---------YRKVKKIYDENNNLIEQVV 602 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 ++++++ A + +A + P E R + R+ +L+ +A V Sbjct: 603 TDEVEYMTADVEDEYVVAQANEPLDEGKHFIRPRVSA---RRRDEILEIDAEKVD---YM 656 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 V+ ++ +E D R ++ S QR V Sbjct: 657 DVSPRMMVSVATACIPFLENDDCNRALMGSN------------------MQRQAVPLMVT 698 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q+P+V G E + +TD G L + S +V + Sbjct: 699 QQPIVATGMEYKA--------ATDSGTAVLAK--------------------SNGVVEKV 730 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 + + + G E I I++ I+ VG V G +L Sbjct: 731 DADHVVV--------RNEQGALEDYSLIKFARSNAGTCINQRPIVEVGETVTAGQVLADG 782 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 ++ + L + + D L V V + + + + Sbjct: 783 P-AMRNGEISLGKNALIGFMTWEGYNYEDAVLLNEKIVREDVYTSIHIEEYETESRDTKL 841 Query: 958 SVER------EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 E E +D DE+ I+ + +IL G+ G L Sbjct: 842 GPEEITRDIPNVSEDALKDL-DERGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRA 900 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + E R E K+ + D++ PGV Sbjct: 901 IFGEKAR-----------------EVRDTSLRVPHGAYGIIVDVKVFTPENSDELQPGVR 943 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 VV+ ++A KR I GDKMAGRHGNKG+VSRILP EDMP+L DGTP+DIVLNPLGVPSRM Sbjct: 944 EVVRCYIAQKRKISVGDKMAGRHGNKGVVSRILPQEDMPYLPDGTPLDIVLNPLGVPSRM 1003 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 N+GQ+ E +LG+A G K+ + + D DI ++ + + Sbjct: 1004 NIGQVLEVNLGYAAKACGIKVMTPVFDSARENDIGDTFDTAREMWHGENAPAYPTKL--- 1060 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 P G I+ +LD G++ +YDG TGE FD VTV Sbjct: 1061 -----------------PKIMGEKGHIID--FSKIELDRDGKTTVYDGRTGEKFDNRVTV 1101 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 GY+Y LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1102 GYMYYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1161 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNS 1371 QE+LT+KSDDV GR + YE+IV G + G PESF V++KE+Q+LG+ + +++ Sbjct: 1162 QEILTVKSDDVEGRVKTYEAIVKGEPIPQPGIPESFRVMLKELQSLGMDVIVQDKDGNEI 1221 Query: 1372 AKMEEIPDFNKC 1383 + D Sbjct: 1222 DMRQNFDDEETG 1233 >gi|254495704|ref|ZP_05108620.1| DNA-directed RNA polymerase subunit beta [Legionella drancourtii LLAP12] gi|254355051|gb|EET13670.1| DNA-directed RNA polymerase subunit beta [Legionella drancourtii LLAP12] Length = 783 Score = 995 bits (2573), Expect = 0.0, Method: Composition-based stats. Identities = 446/786 (56%), Positives = 599/786 (76%), Gaps = 4/786 (0%) Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 +++SL+ +AR N YGFIETP RKV DG+VT+D+ YLSA+EE ++YIAQ++ +LDEDG+ Sbjct: 1 MINSLSVYARTNDYGFIETPCRKVIDGRVTDDIEYLSAIEEVDQYIAQSSVALDEDGNIL 60 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAV 701 +LV CR E L +KI+++D SPKQ+VS+AASLIPFLE+DD+NR LMG NMQRQAV Sbjct: 61 ADLVPCRHQNEFSLTTPDKINYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAV 120 Query: 702 PLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDI 761 P L++E P VGTGME +VA SG ++VAKR G+++ VDA RIV+R + + +GVDI Sbjct: 121 PTLRSEKPLVGTGMERIVASDSGVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDI 180 Query: 762 YRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGY 821 Y L K+ RSNQ+TC+NQRP+V GD+++R D++ADGP TD+G+LALG+N+LVAFMPW+GY Sbjct: 181 YNLTKYFRSNQDTCINQRPIVSTGDKIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGY 240 Query: 822 NFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGI 881 NFEDS+LISER+V ED FT+IHIEE +ARDTKLG EEIT DIPNV E L N+DE G+ Sbjct: 241 NFEDSILISERIVQEDRFTTIHIEELTCIARDTKLGTEEITSDIPNVGESALSNLDESGV 300 Query: 882 ICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVD 941 + +GAEVN GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+D+SLRVPSG++GTV+D Sbjct: 301 VYIGAEVNAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVID 360 Query: 942 VRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG 1001 V++F R G+DK+ R+ S+E E + + +D DE+ I + +IY R+ +L + A GP Sbjct: 361 VQVFTRDGLDKDARAKSIEEEHLARVRKDLVDERRIREEDIYHRVATLLLDKVATGGPAN 420 Query: 1002 FKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQ 1061 K + ++ D + + R +W+ + ++ + + +E L Q E +E RF + +KI Sbjct: 421 LKPGSTVTQDYLDKVERQRWFDIRLDNDALSQQLEQLSKQLEMLSKEMEKRFNDSRKKII 480 Query: 1062 WGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIV 1121 GDD+ PGVL++VKV++A+KR IQ GDKMAGRHGNKG++S ++P EDMP ++DGT VDIV Sbjct: 481 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTSVDIV 540 Query: 1122 LNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG-TGS 1180 LNPLGVPSRMN+GQ+ ETHLG A GLG KI ++++ + +I +SFL K+ G Sbjct: 541 LNPLGVPSRMNIGQVLETHLGLAAKGLGHKIAAMLDTKQTATEI---KSFLTKIYNHDGV 597 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGL 1240 + +DD + R+A+ ++GVP++TPVFDGA EE I SML++A L G++ L DG Sbjct: 598 QRVNLDCLNDDELFRLADNLRAGVPMATPVFDGASEEEIKSMLQLAGLSSDGKTTLIDGR 657 Query: 1241 TGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVW 1300 TG FD VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 658 TGSKFDNKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 717 Query: 1301 CIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLS 1360 ++AYGAAY LQEMLT+KSDDV GRT++Y++IV G+ + G PESFNVL+KE++ALG+ Sbjct: 718 ALEAYGAAYTLQEMLTVKSDDVGGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGID 777 Query: 1361 IDLENS 1366 I+L++ Sbjct: 778 IELDHD 783 >gi|293391585|ref|ZP_06635919.1| DNA-directed RNA polymerase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952119|gb|EFE02238.1| DNA-directed RNA polymerase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 914 Score = 992 bits (2565), Expect = 0.0, Method: Composition-based stats. Identities = 466/912 (51%), Positives = 642/912 (70%), Gaps = 10/912 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P++++IP L+ +Q S++ F+ + +GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLNIPYLLTIQIDSFEKFIKRD----PDGQQGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI + +G L++VSY+ P FDV +C R TYA PL++ LRL+ +D D G +I Sbjct: 57 FPIVSTNGNTELQYVSYQLGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDKDAAPG--TI 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD ++ RIDRRRK+P T L ALG +E+IL F+ KI + + Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEQILDLFFYKITFEIKD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G + + G+ +E G+++T+ +K+L++ V + + ++ Sbjct: 235 NKLLMTLVPERL-RGETAAFDIE--AKGKVYVERGRRITTRHIKALEKDKVTQVEVPTEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G A+D V+ ETGE+ A + + L ++ + + L+ + ++ YI TL Sbjct: 292 IIGKVAAKDYVDLETGELICPANMELSLELLAKLAQAGYTTLETLFTNDLDYGPYISETL 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D + DR AL++IYR+MRPG+ T AE++F+ LFF SD+YDLS VGR+K N L + Sbjct: 352 RVDPSNDRLSALVEIYRMMRPGEPPTKEAAEALFDNLFFSSDRYDLSAVGRMKFNRSLGI 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + EDI++++K L+D+RNG+G +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 EETTGGGTLSNEDIVSVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+++V PQDLINAKP+ +AV EFF SSQLSQ + N LS +TH RR+S Sbjct: 472 ERAVKERLSLGDLEAVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ +AR N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKI 661 RKV +G+VT ++ YLSA+EE IAQANS+LD+D FT+ V CR GE L E+I Sbjct: 592 RKVVNGQVTEEIEYLSAIEEGKYVIAQANSNLDDDFRFTDAFVTCRGEHGESGLYKPEEI 651 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 ++D S +QVVS+AA+LIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTG+E VA Sbjct: 652 HYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIEKAVAL 711 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+VAKR G ++ VDA RIV++ E + +G+DIY L+K+ RSNQNTC+NQ P Sbjct: 712 DSGVAVVAKRGGTIQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPC 771 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V++GD V R +I+ADGPSTDLG+LALG+N+ VAFMPW+GYNFEDSML+SER+V +D FT+ Sbjct: 772 VELGDPVERGEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTT 831 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHI+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPK Sbjct: 832 IHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPK 891 Query: 902 GESPMTPEEKLL 913 GE+ + K++ Sbjct: 892 GETQLNAGRKII 903 >gi|71902420|ref|ZP_00684375.1| DNA-directed RNA polymerase, beta subunit [Xylella fastidiosa Ann-1] gi|71727851|gb|EAO30093.1| DNA-directed RNA polymerase, beta subunit [Xylella fastidiosa Ann-1] Length = 1050 Score = 988 bits (2553), Expect = 0.0, Method: Composition-based stats. Identities = 517/1055 (49%), Positives = 716/1055 (67%), Gaps = 33/1055 (3%) Query: 179 LYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVY 238 LY+ RIIP +G W+D EFD KD + RIDRRRK+PV+ L ALG +EEIL F+ + Sbjct: 2 LYSARIIPCRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEILGEFFEINTF 61 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGI 298 D + + G +S +L D G ++E+GK++T+ +K L+ G+ L + Sbjct: 62 HINPDKGVQLELVPERLRGEILSFNLTD--GGGVIVEAGKRITARHVKQLEASGISALAV 119 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 D L G ++ D+++ TGE+ A ++E + + I + L+V+ ++ AY+ Sbjct: 120 PDDYLIGRILSHDVIDATTGELLASANSEVNEDRIVAFRKAGIESVGTLWVNDLDRGAYL 179 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 NTL D + + +A ++IYR+MRPG+ T A+++F+ LFF D+YDLS VGR+K N Sbjct: 180 SNTLRIDPTRTQLEAQVEIYRMMRPGEPPTKEAAQNLFHNLFFTFDRYDLSMVGRMKFNR 239 Query: 419 RLNLDTPDDVRHIRKEDIIA----------------------IIKILVDLRNGKGTIDDI 456 R+ + + + +IK L ++RNG+G +DDI Sbjct: 240 RVGRKEVAGEPVLYDKKYFSDRNDEESRRLVSKLGETSDILDVIKGLCEIRNGRGVVDDI 299 Query: 457 DNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEF 516 D+LGNRRVRSVGEM +N +R+GL+R+ER++KER+S + + + PQ+LINAKPV +A+ EF Sbjct: 300 DHLGNRRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEF 359 Query: 517 FCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSE 576 F SSQLSQ + N LS +TH RRLSALG GG+ R RAG E+RDVH +HYG +C ET E Sbjct: 360 FGSSQLSQFMDQNNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHLSHYGCLCTIETPE 419 Query: 577 GHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDE 636 G NIGL++SL FAR N YGF+ETPYRKV +G+VT++V YLSA+EE IAQAN+ D+ Sbjct: 420 GPNIGLINSLAVFARTNQYGFLETPYRKVVEGRVTDEVEYLSAIEENQYVIAQANTLTDD 479 Query: 637 DGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNM 696 +G TE V CR GE +L P + ++D SP Q VS+AA+L+PFLE+DD+NR LMG NM Sbjct: 480 NGQLTESFVPCRFQGESLLKPPSYVHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANM 539 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPS 755 QRQAVP L+A+ P VGTG+E VA SG + A+R G+++QVDA RIV++ E + + Sbjct: 540 QRQAVPTLRAQKPLVGTGIERTVALDSGVTVNARRGGVIDQVDAGRIVVKVNESEIIGAT 599 Query: 756 TSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAF 815 +GVDIY L+K+ RSNQNTC+NQRPLV VGD + D++ADGPSTD+G+LALG+NML+AF Sbjct: 600 DAGVDIYGLIKYTRSNQNTCINQRPLVNVGDIIASGDVLADGPSTDIGELALGQNMLIAF 659 Query: 816 MPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKN 875 MPW+GYNFEDS+L+SER+V ED +T+IHIEE +ARDTKLG EEI+ DIPNVSE+ L Sbjct: 660 MPWNGYNFEDSILLSERVVEEDRYTTIHIEELTCIARDTKLGSEEISADIPNVSEQALNR 719 Query: 876 IDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGV 935 +DE G++ +GAEV GDILVGK+TPKGES +TPEEKLLRAIFGEKA DV+D+SLRVP G+ Sbjct: 720 LDESGVVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGM 779 Query: 936 SGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNA 995 GTV+DV++F R GI+K++R+ +E +I+ + +D DD+ IL+ IY+RL + G+ Sbjct: 780 DGTVIDVQVFTRDGIEKDKRAHQIEEYEIKRVKKDFDDQFRILEGAIYARLRSQIVGKVV 839 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 SG KK V++ + +S W+ ++DE ++ + Q + + + RF + Sbjct: 840 NSGV-DIKKGEVITGPYLDGLKKSDWFALRMKDEVAVEAIDRAQKQIQAYQKEFDQRFSD 898 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 K KI GDD+ PGVL++VKVF+A+KR IQ GDKMAGRHGNKG++S I+P EDMPF++DG Sbjct: 899 KRSKITQGDDLAPGVLKMVKVFLAVKRCIQCGDKMAGRHGNKGVISNIVPVEDMPFMEDG 958 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDIVLNPLGVPSRMN+GQI E HLGWA GLG +I+ ++ +AN I+ LR FL ++ Sbjct: 959 TPVDIVLNPLGVPSRMNIGQILEVHLGWAAKGLGHRIQRML---EANAAIADLRKFLNEI 1015 Query: 1176 IGTG----SHTEKISDYDDDSVLRVAEQWKSGVPV 1206 +S + DD +L +A+ GVP+ Sbjct: 1016 YNHDKSLVGERVDLSQFSDDELLNMAKNLTDGVPM 1050 >gi|251772649|gb|EES53213.1| DNA-directed RNA polymerase, beta subunit [Leptospirillum ferrodiazotrophum] Length = 1729 Score = 973 bits (2514), Expect = 0.0, Method: Composition-based stats. Identities = 504/1070 (47%), Positives = 700/1070 (65%), Gaps = 75/1070 (7%) Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD-- 372 + G Y + G++ + + L+ S+ ++ ++Y + ++ + L KN R + Sbjct: 723 PKKGNPYKKEGELFEFEDLDVAKKSKKNNVSLVYSATNKSHDLLLELLDLAKNPHRIESD 782 Query: 373 -ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI 431 A+++IY+ +RPG+V A F+ FF+S +YDLS+VGR+K+N +L + R + Sbjct: 783 PAVVEIYKKIRPGEVPHVETARQFFDQSFFNSKRYDLSSVGRLKLNSKLGIRESLSNRLL 842 Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERIS 491 K DI+ +I+ +VDL KG IDDID+LGNRRVRSVGE+L+NQ+R+GL+RMER+IKER++ Sbjct: 843 TKSDIVEVIRYMVDLLENKGEIDDIDHLGNRRVRSVGELLENQFRIGLVRMERAIKERLN 902 Query: 492 SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551 D +SV+ D IN KPV + + EFF SSQLSQ + N L+ +TH RRLSALG GG+ R Sbjct: 903 LGDPESVISSDPINVKPVTAIIKEFFGSSQLSQFMDQTNPLAEVTHKRRLSALGPGGLTR 962 Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT 611 RAG E+RDVH +HYGRICP ET EG NIGL++SL +FARVN +GFIE+P R V +G Sbjct: 963 ERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLATFARVNDFGFIESPVRVVENGIAK 1022 Query: 612 NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQV 671 ++VYLSAM+ + IAQA++ LD++G+ TE V R G+ I V +++ +ID +P+Q+ Sbjct: 1023 PEIVYLSAMDGDKYIIAQASTKLDQNGALTEPQVSARFKGDFISVSPDQVQYIDVAPQQI 1082 Query: 672 VSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR 731 VS+A +LIPFLE++D+NR LMG NMQRQAVPLL+ AP VGTGME VVA+ SG I A Sbjct: 1083 VSVATALIPFLEHNDANRALMGSNMQRQAVPLLRPSAPLVGTGMEKVVARDSGYVIYATE 1142 Query: 732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRN 791 G V ++D ++ +G+ Y L+KF+RSNQNTC+NQ+ L+ + ++ Sbjct: 1143 DGEVVKIDGTSFTVKYK-------NTGLKTYPLIKFRRSNQNTCLNQKVLLSPRTKFKKG 1195 Query: 792 DIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMA 851 D++ DGPST+ GDLA+G+N+LVAFMPW GYNFED++LISER+V +D+FTSIHIEEFE+ A Sbjct: 1196 DVLVDGPSTERGDLAMGQNVLVAFMPWGGYNFEDAILISERLVRDDMFTSIHIEEFELEA 1255 Query: 852 RDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEK 911 R+TK G EEITRDIPN+S+E LKN+DE GI+ +GAEV PGDILVGK+TPK E+ +TPEE+ Sbjct: 1256 RETKQGKEEITRDIPNLSDEALKNLDEGGIVRIGAEVKPGDILVGKVTPKAETQLTPEER 1315 Query: 912 LLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV--EREQIELLAR 969 LLRAIFG+K+ + +D SL VP+G+ G VVDV+I +R GI+K E ++ + I L Sbjct: 1316 LLRAIFGDKSANWKDASLTVPAGIEGIVVDVKILSRKGIEKEEAVMAAPMHGQDIGSLTH 1375 Query: 970 DKDDEQVILDRNIYSRLMEILCGQNAV-------SGPKGFKKSTVLSSDLISEYPRSQWW 1022 E ++ ++ L G+ +G KK L++D + + + Sbjct: 1376 AYQGELRKVEEEKKEKIKAFLLGKVIKEDILDAETGDVILKKKRRLTTDTLEKLA--DYS 1433 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 + D+K Q +++++ + + ++ R +I +++ GD++ PGVL++VKV+VAMKR Sbjct: 1434 AITLSDQKEQDELQAIESRTKEKIEAIQMRHDERIGRLKKGDELAPGVLKLVKVYVAMKR 1493 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 + GDKMAGRHGNKG+VSRI+P EDMPFL DGTPVDI+LNPLGVPSRMNVGQI ETHLG Sbjct: 1494 KLSVGDKMAGRHGNKGVVSRIVPVEDMPFLPDGTPVDIILNPLGVPSRMNVGQILETHLG 1553 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG + + + D +I + + Sbjct: 1554 MAARALGLHVATPVFDGATEEEIKAMLKKGGISETGQTRLV------------------- 1594 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G+ TGE F+RPVTVG +YM KL+H+ Sbjct: 1595 ----------------------------DGK-------TGEVFERPVTVGVMYMFKLHHL 1619 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW +QAYGAA LQE LT+KSDDV Sbjct: 1620 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAASTLQEFLTVKSDDV 1679 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 GR+R+YE+IV G + + G PESFNVL+KE+Q+L L I+L ++ K + Sbjct: 1680 SGRSRMYEAIVRGENYLDPGLPESFNVLIKELQSLALDIELLKTQEKLND 1729 Score = 356 bits (913), Expect = 2e-95, Method: Composition-based stats. Identities = 104/238 (43%), Positives = 152/238 (63%), Gaps = 9/238 (3%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 VR FG + + ID+ DLIE+QK SY+ FL +++ P R + GLQ+AF SVFPI ++G Sbjct: 8 VRHNFGGSQQFIDVQDLIEIQKRSYERFLQLDVPPSLREDSGLQSAFLSVFPIEDYNGNY 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS---------IK 123 ++F+ Y PK++ +CL R +TYA PLKI +R+ + ++ S +K Sbjct: 68 RIDFIEYSLGEPKYEEYECLERGMTYAAPLKIKIRIAALEQNKEIDKTSPLSKEPSFSVK 127 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +KE+ Y+GDLPLMT GTF+I G +R+VVSQLHRSPG+ F HDK + L+G L+ R Sbjct: 128 YMKEEEKYLGDLPLMTTKGTFIINGTERVVVSQLHRSPGVFFSHDKTKTRLTGTPLFTSR 187 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQR 241 IIP +G W+D E+D KD ++VRIDR++K P T L A+GM S +++ +Y + Sbjct: 188 IIPYRGSWIDFEYDQKDNLYVRIDRKKKFPATILLKAMGMTSADVVKEYYNIETLQIK 245 >gi|294810204|ref|ZP_06768871.1| DNA-directed RNA polymerase, beta subunit [Bacteroides xylanisolvens SD CC 1b] gi|294442616|gb|EFG11416.1| DNA-directed RNA polymerase, beta subunit [Bacteroides xylanisolvens SD CC 1b] Length = 1070 Score = 965 bits (2495), Expect = 0.0, Method: Composition-based stats. Identities = 460/1112 (41%), Positives = 671/1112 (60%), Gaps = 63/1112 (5%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F ++ PD +EVQ S+ FL ++ P++R NEGL F FPI Sbjct: 8 QRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKNEGLYKVFAENFPIADTRNNF 67 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 +LEF+ Y DPP++ +DDC+ R LTY+VPLK L+L D D I Q +++ Sbjct: 68 VLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVI-----QDVFL 122 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G +P MT TFVI G +R+VVSQLHRSPG+ F +G LY+ RIIP +G W+ Sbjct: 123 GPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQS---VHANGTKLYSARIIPFKGSWI 179 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + D ++++ IDR++K+PVT+ L A+G +++ +IL F L Sbjct: 180 EFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFDLAEDVKVNKTNLKKVL-- 237 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAED 311 G+KL + +LK+ E V + Sbjct: 238 -------------------------GRKLAARVLKTWIEDFVDEDT------------GE 260 Query: 312 IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN-AYIRNTLVTDKNKDR 370 +V+ E E+ I+ V++E+ ++EI S +++I + + ++ + I NTL D + Sbjct: 261 VVSIERNEVIIDRETVLEEEHIDEILESGVQNILLHKDEPNQSDFSIIYNTLQKDPSNSE 320 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 K+A+L IYR +R D + + A + N LFF +YDL VGR ++N +LNL T DVR Sbjct: 321 KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRV 380 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + KEDII IIK L++L N K +DDID+L NRRVR+VGE L NQ+ +GL RM R+I+ER+ Sbjct: 381 LTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRERM 440 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + D + P DLINAK + S + FF ++ LSQ + N L+ ITH RR+SALG GG++ Sbjct: 441 NVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTNPLAEITHKRRMSALGPGGLS 500 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R RAG E+RDVH THYGR+CP ET EG NIGL+SSL FA++N GFIETPYRKV +GKV Sbjct: 501 RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINELGFIETPYRKVENGKV 560 Query: 611 ---TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 N ++YL+A EEE + IAQ N+ L++DG+F V R + +V ++D +D + Sbjct: 561 DLSDNGLIYLTAEEEEEKVIAQGNAPLNDDGTFVLNRVKSRQDADFPVVEPSEVDLMDVA 620 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P+Q+ SIAASLIPFLE+DD+NR LMG NM RQAVPLL++EAP VGTG+E + + S I Sbjct: 621 PQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSEAPIVGTGIERQLVRDSRTQI 680 Query: 728 VAKRAGIVEQVDAIRIVI---RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 A+ G+V+ VDA I I R+ + + + YR+ KF+++NQN ++ RP+ Sbjct: 681 TAEGDGVVDYVDATTIRILYDRTEDEEFVSFEPALKEYRIPKFRKTNQNMTIDLRPICDK 740 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G V++ DI+ +G ST+ G+LALG+N+LVA+MPW GYN+ED+++++ER+V ED+ TS+H+ Sbjct: 741 GQRVKKGDILTEGYSTEKGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV 800 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 EE+ + R+TK G EE+T DIPNVSEE K++DE GI+ +GA + PGDI++GKITPKGES Sbjct: 801 EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRIGARIEPGDIMIGKITPKGES 860 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +PEEKLLRAIFG+KA DV+D SL+ + G V+D ++F+R + KN S ++ + Sbjct: 861 DPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKKLFSR--VIKNRSSKLADKALL 918 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVS-----GPKGFKKSTVLSSDLISEYPRS 1019 + + + + L R + +LM + G+ + G + K + S+ + Sbjct: 919 PKIDDEFESKVADLKRILVKKLMTLTEGKVSQGVKDYLGAEVIAKGSKFSASDFDSLDFT 978 Query: 1020 QW-WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 D+ + + L + + L+ K K I GD++P G++++ KV++ Sbjct: 979 SIQLSNWTSDDHINGMIRDLVMNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYI 1038 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 A KR I GDKMAGRHGNKGIVSR++ EDMP Sbjct: 1039 AKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMP 1070 >gi|284097274|ref|ZP_06385416.1| DNA-directed RNA polymerase subunit beta [Candidatus Poribacteria sp. WGA-A3] gi|283831216|gb|EFC35184.1| DNA-directed RNA polymerase subunit beta [Candidatus Poribacteria sp. WGA-A3] Length = 836 Score = 962 bits (2486), Expect = 0.0, Method: Composition-based stats. Identities = 474/888 (53%), Positives = 614/888 (69%), Gaps = 65/888 (7%) Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ +D+++V+P DLINAKP+V+A+ EFF SQLSQ + N L+ ITH RRLSALG GG+ Sbjct: 1 MNLLDMETVLPHDLINAKPIVAAIKEFFAGSQLSQFMDQTNPLAEITHKRRLSALGPGGL 60 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGK 609 R RAG E+RDVHP+HY RICP ET EG NIGL++SL ++AR+N +GFIE P+RKV G+ Sbjct: 61 TRERAGFEVRDVHPSHYSRICPIETPEGPNIGLITSLATYARINEFGFIEAPFRKVQKGR 120 Query: 610 VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPK 669 V DV +LS +E E+ IAQANS +D G + V R GE I +++D++D SPK Sbjct: 121 VLRDVEFLSPLEGEHHVIAQANSQVDAAGRLLSDSVTARSEGEFIATTPDRVDYVDVSPK 180 Query: 670 QVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVA 729 QVVS+A +LIPFLE+DD+NR LMG NMQRQAVPL+++EAP VGTGME+VVA+ SG A Sbjct: 181 QVVSVATALIPFLEHDDANRALMGSNMQRQAVPLVQSEAPLVGTGMEAVVARDSGYVEQA 240 Query: 730 KRAGIVEQVDAIRIVIRSVEGDLDPSTSGV----DIYRLMKFQRSNQNTCVNQRPLVKVG 785 +R G+VE VDA RIV+R+ G D D Y L+KFQR+NQNTCV Q P+VKVG Sbjct: 241 RRDGVVESVDARRIVVRTEGGKADEGKKKTGRFWDTYDLVKFQRTNQNTCVTQTPIVKVG 300 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 V++ ++ADGP+ D G+LALG+N+LV FMPW GYNFED++L+SER+V ED FTSIHIE Sbjct: 301 QPVKKGQVLADGPAIDRGELALGKNILVGFMPWGGYNFEDAILLSERLVREDTFTSIHIE 360 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 EFEV ARDTKLG EEITRDIPN+ EE L+N+DE GI+ +GAEV GDILVGK+TPKGE+ Sbjct: 361 EFEVEARDTKLGKEEITRDIPNLGEEALRNLDESGIVRIGAEVKAGDILVGKVTPKGETQ 420 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE 965 +TPEEKLLRAIFGEKA DV+DTSL+VP G+ G VVDV+IF+R GIDK+ERS ++E + Sbjct: 421 LTPEEKLLRAIFGEKAGDVKDTSLQVPPGIEGIVVDVKIFSRKGIDKDERSKNIESQDRL 480 Query: 966 LLARDKDDEQVILDRNIYSRLMEILCGQNA-------VSGPKGFKKSTVLSSDLISEYPR 1018 R+ DE I++ ++ +L GQ SG KK ++++++ + P Sbjct: 481 KFERNYQDELHIIEDERNKKIRRLLLGQVVGRDLMDPESGEVILKKKGKITAEVLRKLPD 540 Query: 1019 SQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFV 1078 + + D++ QR +E ++ + L+ + K+ +++ GD++PPGV+++VKV++ Sbjct: 541 DDVRRVILGDQEEQRKLEEVERAAKDHIESLQTFYDEKVGRLRRGDELPPGVIKLVKVYL 600 Query: 1079 AMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFE 1138 A+KR I GDKMAGRHGNKG+VSRILP EDMP+L DGTP++IVLNPLGVPSRMNVGQI E Sbjct: 601 AIKRKISVGDKMAGRHGNKGVVSRILPEEDMPYLPDGTPIEIVLNPLGVPSRMNVGQILE 660 Query: 1139 THLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198 THLGW+ LG S + D G+I L Sbjct: 661 THLGWSARALGIYAASPVFDGATEGEIKELLRQAG------------------------- 695 Query: 1199 QWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLK 1258 L QS++YDG TG+PF PVTVGY+YM+K Sbjct: 696 ------------------------LPENG-----QSVVYDGRTGDPFKSPVTVGYVYMMK 726 Query: 1259 LNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIK 1318 L+H+V DK++ARS G YSLVTQQPLGGK+ GGQRLGEMEVW +QAYGAA LQE LT+K Sbjct: 727 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAASTLQEFLTVK 786 Query: 1319 SDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 SDDV GR+R+YE+IV G + E G PESFNVLVKE+Q+LGL ++L S Sbjct: 787 SDDVPGRSRMYEAIVKGENFLEPGLPESFNVLVKELQSLGLDVELIKS 834 Score = 41.6 bits (96), Expect = 1.00, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 10/166 (6%) Query: 226 EEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKV-SSSLVDIDTGEQVIESGKKLTSGL 284 E++L + + + P ++V K+ S +D D + IES +L Sbjct: 425 EKLLRAIFGEKAGDVKDTSLQVPPGIEGIVVDVKIFSRKGIDKDERSKNIESQDRLKFER 484 Query: 285 -----LKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHS 339 L ++++ K + L G V D+++ E+GE+ ++ I + L ++ Sbjct: 485 NYQDELHIIEDERNKKIRRL---LLGQVVGRDLMDPESGEVILKKKGKITAEVLRKLPDD 541 Query: 340 EIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGD 385 ++R + IL D + + + +R GD Sbjct: 542 DVRRV-ILGDQEEQRKLEEVERAAKDHIESLQTFYDEKVGRLRRGD 586 >gi|154355|gb|AAA27215.1| RNA polymerase (EC 2.7.7.6) [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 958 Score = 959 bits (2480), Expect = 0.0, Method: Composition-based stats. Identities = 506/973 (52%), Positives = 687/973 (70%), Gaps = 16/973 (1%) Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R + L L Sbjct: 1 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQMELIPERL 60 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 G S + G+ +E G+++T+ ++ L++ +K + + + + G V++D V+ Sbjct: 61 -RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVVSKDYVD 117 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 TGE+ A + L ++ S + I L+ + +++ YI T+ D DR AL Sbjct: 118 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRLSAL 177 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 ++IYR+MRPG+ T AES+F LFF D+YDLS V R+K N L D + + K+ Sbjct: 178 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVARMKFNRSLLRDEIEGSGILSKD 237 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ER++KER+S D Sbjct: 238 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 297 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 +D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+SALG GG+ R A Sbjct: 298 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRELA 357 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPYR+V DG VT+++ Sbjct: 358 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVTDEI 417 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D++D S +QVVS+ Sbjct: 418 HYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 477 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA SG VAKR G Sbjct: 478 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGT 537 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V +G+ V R D++ Sbjct: 538 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 597 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+IHI+E ++RDT Sbjct: 598 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 657 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLR Sbjct: 658 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 717 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Q++ +D +E Sbjct: 718 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 777 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRN 1034 IL+ ++SR+ +L ++ + + PR +W + + DE+ Q Sbjct: 778 LQILEAGLFSRIRAVLVSSGV-------------EAEKLDKLPRDRWLELGLTDEEKQNQ 824 Query: 1035 VESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRH 1094 +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR IQ GDKMAGRH Sbjct: 825 LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 884 Query: 1095 GNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKS 1154 GNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG A G+G KI + Sbjct: 885 GNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINA 944 Query: 1155 LINDYKANGDISP 1167 ++ + + Sbjct: 945 MLKQQQEVAKLRE 957 >gi|147728|gb|AAA24585.1| RNA polymerase beta subunit (EC 2.7.7.6) [Escherichia coli] gi|223201|prf||0607192A polymerase beta,RNA Length = 958 Score = 959 bits (2479), Expect = 0.0, Method: Composition-based stats. Identities = 510/973 (52%), Positives = 689/973 (70%), Gaps = 16/973 (1%) Query: 195 EFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADL 254 EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+++ R + L L Sbjct: 1 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL 60 Query: 255 MVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVN 314 G S + G+ +E G+++T+ ++ L++ VK + + + + G VA+D ++ Sbjct: 61 -RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 117 Query: 315 GETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDAL 374 TGE+ A + L ++ S + I L+ + +++ YI TL D DR AL Sbjct: 118 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 177 Query: 375 LDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKE 434 ++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L + + + K+ Sbjct: 178 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 237 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ER++KER+S D Sbjct: 238 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 297 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 +D++MPQD+INAKP+ +AV EFF SSQLSQ N LS ITH RR+SALG GG+ R RA Sbjct: 298 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMVQNNPLSEITHKRRISALGPGGLTRERA 357 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 G E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPYRKV DG VT+++ Sbjct: 358 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 417 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 YLSA+EE N IAQANS+LDE+G F E+LV CR GE L R+++D++D S +QVVS+ Sbjct: 418 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 477 Query: 675 AASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGI 734 ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA SG VAKR G+ Sbjct: 478 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 537 Query: 735 VEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDII 794 V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V +G+ V R D++ Sbjct: 538 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 597 Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDT 854 ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+IHI+E ++RDT Sbjct: 598 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 657 Query: 855 KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLR 914 KLGPEEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLR Sbjct: 658 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 717 Query: 915 AIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDE 974 AIFGEKA DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Q++ +D +E Sbjct: 718 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 777 Query: 975 QVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRN 1034 IL+ ++SR+ +L ++ + + PR +W + + DE+ Q Sbjct: 778 LQILEAGLFSRIRAVLVAGGV-------------EAEKLDKLPRDRWLELGLTDEEKQNQ 824 Query: 1035 VESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRH 1094 +E L QY+ K E + + K KI GDD+ PGVL++VKV++A+KR IQ GDKMAGRH Sbjct: 825 LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 884 Query: 1095 GNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKS 1154 GNKG++S+I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG A G+G KI + Sbjct: 885 GNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINA 944 Query: 1155 LINDYKANGDISP 1167 ++ + + Sbjct: 945 MLKQQQEVAKLRE 957 >gi|57504730|ref|ZP_00370784.1| DNA-directed RNA polymerase beta chain , fragment [Campylobacter coli RM2228] gi|57019386|gb|EAL56084.1| DNA-directed RNA polymerase beta chain , fragment [Campylobacter coli RM2228] Length = 963 Score = 959 bits (2479), Expect = 0.0, Method: Composition-based stats. Identities = 463/968 (47%), Positives = 644/968 (66%), Gaps = 15/968 (1%) Query: 414 VKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKN 473 +KMN +L L+ P+ V + EDII K L+ ++NGKG IDD D+LGNRR+RS+GE+L N Sbjct: 1 MKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLAN 60 Query: 474 QYRLGLLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 + LGL +M+++I+++ + + D+D VMP DLIN K + + + EFF QLSQ + N Sbjct: 61 ELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNP 120 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 LS +TH RRLSALG+GG+ + RAG E+RDVH THYGRICP ET EG NIGL+++L+++A+ Sbjct: 121 LSEVTHKRRLSALGEGGLVKERAGFEVRDVHSTHYGRICPVETPEGQNIGLINTLSTYAK 180 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 VN GF+E PYRKV +GKVTN+VVYL+A +EE +IA A++ +D G+ EE V R G Sbjct: 181 VNELGFVEAPYRKVANGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDG 240 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E IL RE++ ID VV +AASLIPFLE+DD+NR LMG NMQRQAVPLL A AP V Sbjct: 241 ETILARREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIV 300 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTGME ++A+ + A+ AKR G+VE+VD I I + +D Y + K R+N Sbjct: 301 GTGMEQIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDK----GPFIDHYTMEKNLRTN 356 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QNT Q P+VK GD V+ IIADGPS D G+LA+G+N L+AFMPW+GYN+ED++++SE Sbjct: 357 QNTNYIQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSE 416 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R++ ED FTS+HI E E+ AR+ K G EEIT+DIPNV EE + ++DE GI +G + PG Sbjct: 417 RIIREDTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPG 476 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 ILVGK++PKGE TPEE+LLRAIFGEKA V + SL + + G VVDV+IF + G + Sbjct: 477 MILVGKVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYE 536 Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTV 1007 K++R+I ++ L ++ D +++DR R+ +L + G K +KK Sbjct: 537 KDDRAIKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQT 596 Query: 1008 LSSDLISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDM 1066 + + R +++Q+ + LK ++ K L+ K+E ++ D + Sbjct: 597 ADISELEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDIL 656 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 P GV+++VKV++A KR ++ GDKMAGRHGNKGIVS I+P DMP+L +G VDI LNPLG Sbjct: 657 PSGVIKLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLG 716 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTG---SHTE 1183 VPSRMN+GQI E+HLG + LG +I+ + D K + LR+ + ++ + E Sbjct: 717 VPSRMNIGQILESHLGLVGLRLGDQIQEI-FDRKQKDFVKELRAKMLEICSIPRLVNEKE 775 Query: 1184 KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243 I + D+ +L A W GV +TPVF+G + E + +A +D G++ LYDG TGE Sbjct: 776 FIKNLSDEELLNYARDWSKGVKFATPVFEGVNIEEFAKLFEIAKIDMDGKTELYDGRTGE 835 Query: 1244 PFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQ 1303 V VG +YMLKL+H+V +KV+ARSTG YSLVTQQP+GGK+ GGQR GEMEVW ++ Sbjct: 836 KIAERVHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALE 895 Query: 1304 AYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 AYGAA+ L+EMLTIKSDDV GR Y+++ G + TG PE+F VL E+++L L +++ Sbjct: 896 AYGAAHTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEI 955 Query: 1364 ENSRTKNS 1371 + N Sbjct: 956 FDKDEDNE 963 >gi|33339717|gb|AAQ14338.1|AF288479_1 P127-H5 [Helicobacter bilis] Length = 1122 Score = 952 bits (2460), Expect = 0.0, Method: Composition-based stats. Identities = 479/1124 (42%), Positives = 712/1124 (63%), Gaps = 32/1124 (2%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R+R F K+ E +D+P+L+ +QK SYD FL ++ G++ KS+FPI +G Sbjct: 10 RLRVDFSKSQEELDVPNLLMLQKDSYDSFL----YSNDSRESGIERVLKSIFPIQDSAGR 65 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 LE+ EF K+ + + + R LTY++PLKI +RL+++D D+ +KDIKEQ+IY Sbjct: 66 VTLEYAGCEFGKQKYTIAETMVRGLTYSIPLKIKIRLVLWDKDDKGEQVGVKDIKEQTIY 125 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 + ++PLMT +F+I G++R+VV+QLHRSPG+ F D+ S + KL+Y +IIP+ G W Sbjct: 126 VREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEDESNTSAN-KLIYTGQIIPNMGAW 184 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSA 251 + E+D+KDI++VRI++RRK+PVT ALG ++I+ YP + S + D + P + Sbjct: 185 LYFEYDAKDIMYVRINKRRKMPVTILFRALGYSKQQIIQMLYPVLDVSVKKDKFYIPFNP 244 Query: 252 ADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSD--CLCGLYVA 309 D+ + L++ + G+ V+ +GK+ ++ L E+ + + + L Y+A Sbjct: 245 NDI--EGSLEYDLIN-EKGQVVLSAGKRFNKKRIRDLNEQNISYDKVEFSTTNLLNTYLA 301 Query: 310 EDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK- 368 E +++ ++GE+ ++ ++E + +++ ++I I++ + + I N+ + D Sbjct: 302 EPVIDSKSGEVILDTLSPLNEANTKKLNDNKITKFKIIHDTAPGYDNSIINSFLADMESL 361 Query: 369 -----------DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 + A + IY+VMRP + T VA LFFD +YDL+ VGR+KMN Sbjct: 362 KNIRQTEKIDDECDLAAIRIYKVMRPAEPVTREVAHKFIEQLFFDPSRYDLTGVGRMKMN 421 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +LNL PD V + EDII +K L+ +RNGKG IDD D+LGNRR+R++GE+L N+ Sbjct: 422 HKLNLKVPDYVSVLTYEDIIETVKYLMQVRNGKGRIDDRDHLGNRRIRAIGELLANELHS 481 Query: 478 GLLRMERSIKERISSV-DIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 GL++M++SIK++++ ++VMP DLI++K + S + EFF S QLSQ + N LS IT Sbjct: 482 GLVKMQKSIKDKLTQQTSFENVMPHDLISSKMITSTIMEFFASGQLSQFMDQTNPLSEIT 541 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F +VN G Sbjct: 542 HKRRLSALGEGGLVKERVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTKVNDLG 601 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 FIE PY+KV DGK TN+VVYL+A +E+ + IA A++ LD E L+ RC GE L Sbjct: 602 FIEAPYKKVVDGKTTNEVVYLTATQEDGKVIAPASTKLDSTNKIVEGLIETRCGGEISLR 661 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 E ++ ID S + +V +AASLIPFLE+DD+NR LMG NMQRQAVPLLK +AP VGTG+E Sbjct: 662 KTEDVELIDLSARMLVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKPDAPIVGTGIE 721 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 SV+A+ S AAI A++ G+VE+VD I I + + +D Y + K R+NQNT Sbjct: 722 SVIARDSWAAIKARQGGVVEKVDGKNIYILGENE----NGAYIDSYSMQKNMRTNQNTSF 777 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 QRP+VKVGD+++ IIADG S D G+LALG+N+ VAFMPW+GYNFED++++SE ++ + Sbjct: 778 TQRPIVKVGDKIKAGQIIADGASMDSGELALGKNIRVAFMPWYGYNFEDAIVVSENIIKD 837 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D FTS+HI E E+ AR+ K G EEIT DIPNV E+ + ++DE GI+ +G V G ILVG Sbjct: 838 DAFTSVHIYEKEIEARELKHGIEEITADIPNVREDSIAHLDESGIVKIGTYVTGGMILVG 897 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 K+TPKG+ TPEE+LLRAIFGEKA V + SL P + G VVDV+IF + G +K+ R+ Sbjct: 898 KVTPKGDVKPTPEERLLRAIFGEKAGHVVNKSLYCPQSMEGYVVDVKIFXKKGYEKDARA 957 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ----NAVSGPKGFKKSTVLSSDL 1012 ++ L + + +L++ R+ +L + A K FKK + Sbjct: 958 RQAYEDEKSDLDIEHHERLTMLNKEEMLRISYVLSKEPLSAEAKINDKVFKKGECIPKKE 1017 Query: 1013 ISEYPRSQWWQ-FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + R +++Q E +K + K +L + K+ ++ D +P GV+ Sbjct: 1018 FDDINRFALNTLIKSYSKEIQNQYEQIKNNFLEQKRVLGVEHEEKLAILEKDDILPNGVV 1077 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 ++VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ KDG Sbjct: 1078 KLVKIYIATKRKLKVGDKMAGRHGNKGIVSNIVPAVDMPYTKDG 1121 >gi|213418782|ref|ZP_03351848.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 837 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 434/845 (51%), Positives = 596/845 (70%), Gaps = 9/845 (1%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 + R+RK FGK P+++D+P L+ +Q S+ F+ + GL+AAF+SV Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 FPI ++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++ Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 KDIKEQ +YMG++PLMT +GTFVI G +R++VSQLHRSPG+ FD DKG+ SGK+LY Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRG 242 RIIP +G W+D EFD KD + VRIDRRRK+P T L AL +E+IL F+ K+V+ R Sbjct: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRD 234 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDC 302 + L L G S + G+ +E G+++T+ ++ L++ +K + + + Sbjct: 235 NKLQMELIPERL-RGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEY 291 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 + G V++D V+ TGE+ A + L ++ S + I L+ + +++ YI T+ Sbjct: 292 IAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETV 351 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D DR AL++IYR+MRPG+ T AES+F LFF D+YDLS VGR+K N L Sbjct: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 D + + K+DII ++K L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ Sbjct: 412 DEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER++KER+S D+D++MPQD+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+S Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPY Sbjct: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 Query: 603 RKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKID 662 R+V DG VT+++ YLSA+EE N IAQANS+LD++G F E+LV CR GE L R+++D Sbjct: 592 RRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVD 651 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++D S +QVVS+ ASLIPFLE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 SG VAKR G V+ VDA RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V Sbjct: 712 SGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 +G+ V R D++ADGPSTDLG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+I Sbjct: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 Query: 843 HIEEF 847 HI+E Sbjct: 832 HIQEL 836 >gi|312795764|ref|YP_004028686.1| DNA-directed RNA polymerase beta chain [Burkholderia rhizoxinica HKI 454] gi|312167539|emb|CBW74542.1| DNA-directed RNA polymerase beta chain (EC 2.7.7.6) [Burkholderia rhizoxinica HKI 454] Length = 712 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 400/713 (56%), Positives = 525/713 (73%), Gaps = 11/713 (1%) Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D +P Q+VS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E VGTG+E A S Sbjct: 1 MDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTTAVDS 60 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 G + A R G+V+ VDA R+VIR + + GVDIY L+K+ RSNQNT +NQRP+VK Sbjct: 61 GTTVQAFRGGVVDYVDAGRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVK 120 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 VGD V R D+IADG STDLG+LALG+NMLVAF PW+GYNFEDS+LISER+V++D +TSIH Sbjct: 121 VGDRVARGDVIADGASTDLGELALGQNMLVAFTPWNGYNFEDSILISERVVADDRYTSIH 180 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 IEE V+ARDTKLGPEEITRDI N++E L +DE GI+ +GAEV GD+LVGK+TPKGE Sbjct: 181 IEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGE 240 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 + +TPEEKLLRAIFGEKA DV+DTSLRVPSG++GTV+DV++F R GI +++R+ + ++ Sbjct: 241 TQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIQRDKRAQQIIDDE 300 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 ++ D +D+ I++ + + RL +L G+ GPK K ++ + + + W+ Sbjct: 301 LKRYRLDLNDQLRIVEGDAFERLARMLDGKVVNGGPKKLAKGAKITREYLDDLDHYHWFD 360 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 + DE +E++K E + + F+ K +K+ GD++PPGVL++VKV++A+KR Sbjct: 361 IRLADEDAAAQLEAIKESIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRR 420 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 +Q GDKMAGRHGNKG+VS+I+P EDMP++ DG P D+VLNPLGVPSRMNVGQI ETHLGW Sbjct: 421 LQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPCDVVLNPLGVPSRMNVGQILETHLGW 480 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSG 1203 A GLG +I ++ K + LRSFL KV H E I + DD V+ +A+ + G Sbjct: 481 AAKGLGWRIGEML-QAKKATLVQDLRSFLTKVYNESGHPESIDEMSDDEVIELAQNLREG 539 Query: 1204 VPVSTPVFDGADEEAINSMLRMADLDESG----------QSILYDGLTGEPFDRPVTVGY 1253 VP +TPVFDGA E+ I+ ML +A DE Q LYDG TGE F+RPVTVGY Sbjct: 540 VPFATPVFDGAHEKEISRMLDLAFPDEVAQQLGMTKSKNQVALYDGRTGEAFERPVTVGY 599 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 ++MLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+YVLQE Sbjct: 600 MHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQE 659 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 MLT+KSDDV GRT+VYE++V G+ + G PESFNVLVKE+++LG+ IDL+ + Sbjct: 660 MLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 712 >gi|254230351|ref|ZP_04923736.1| DNA-directed RNA polymerase, beta subunit [Vibrio sp. Ex25] gi|151937118|gb|EDN55991.1| DNA-directed RNA polymerase, beta subunit [Vibrio sp. Ex25] Length = 690 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 398/706 (56%), Positives = 524/706 (74%), Gaps = 18/706 (2%) Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D + QVVSIAASLIPFLE+DD+NR LMG NMQRQAVP LKA+ P VGTG+E VA S Sbjct: 1 MDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVDS 60 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 G VAKR G+++ VDA RIV++ E +L P +G+DIY L K+ RSNQNTC+NQRP V Sbjct: 61 GVTAVAKRGGVIQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPCVM 120 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 G+ V R D++ADGPSTDLG+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+IH Sbjct: 121 PGEPVSRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIH 180 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 I+E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV GDILVGK+TPKGE Sbjct: 181 IQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGE 240 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 + +TPEEKLLRAIFGEKA DV+DTSLRVP+ VSGT++DV++F R G++K++R++ +E+ Q Sbjct: 241 TQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQ 300 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 ++ +D +E IL+ + +R+ +L S + R +W + Sbjct: 301 LKEAKKDLTEEFQILEGGLLNRVKAVLIEGG-------------YSEAKLDTTDRKKWLE 347 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 ++D+ +Q +E L Q++ K+ + +F+ K KI GDD+ PGVL++VKV++A+KR Sbjct: 348 LTLEDDALQTQLEQLAEQWDELKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRR 407 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 IQ GDKMAGRHGNKG++S+I P EDMP+ + G PVDIVLNPLGVPSRMN+GQI E HLG Sbjct: 408 IQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGL 467 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVI--GTGSHTEKISDYDDDSVLRVAEQWK 1201 A G+G KI ++ K +++ R FL+KV G I+ DD V + + + Sbjct: 468 AAKGIGDKINQMV---KEQQELAKFREFLQKVYDLGDTRQKVDIASLSDDEVRTLIKNLR 524 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G+P++TPVFDGA EE+I ++L +ADL SGQ L+DG TG+ F+RPVTVGY+YMLKLNH Sbjct: 525 GGLPIATPVFDGAPEESIKALLELADLPTSGQLTLFDGRTGDAFERPVTVGYMYMLKLNH 584 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDD Sbjct: 585 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 644 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 V GRT++Y++IV GN + E G PESFNVL+KE+++LG++I+LE+ Sbjct: 645 VNGRTKMYKNIVDGNHSMEPGMPESFNVLLKEIRSLGINIELEDEE 690 >gi|2668777|gb|AAB88811.1| DNA-dependent RNA polymerase beta subunit [Rickettsia typhi] Length = 864 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 476/850 (56%), Positives = 645/850 (75%), Gaps = 6/850 (0%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDH-FLMMNIAPDERPNEGLQAAFKSVFPITAFS 69 RVRK FG + DIP+LIE+QK SY+ FL +NI ER N+GLQ+ S+FPI+ S Sbjct: 17 RRVRKNFGHINLVADIPNLIEIQKNSYERNFLQLNIKDSERKNKGLQSILNSIFPISDSS 76 Query: 70 GAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 A LEFV YEFD PK+DVD+C R L+YA PLK+TLRL ++D+DE TG + IK IKEQ Sbjct: 77 NIANLEFVKYEFDTPKYDVDECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQE 136 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 +YMGD+PLMTK+GTF+I G +R+VVSQ+HRSPG+ F HD+G+ SGKLLY+ R+IP +G Sbjct: 137 VYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRG 196 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYS-QRGDFWCFP 248 W+D+EFD+KD+I+ RIDR+RK+ T+ L A+GM++EEI+ +Y + Y + W Sbjct: 197 SWLDLEFDAKDVIYFRIDRKRKLYATTLLRAIGMNTEEIMKFYYNSVTYKCIKNKGWSVK 256 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYV 308 + +++S L+D DTG ++++G+K+T L + G+ + +T + L G Y+ Sbjct: 257 FIPQHI-TAHRLTSDLIDADTGNVLLKAGQKITPRLAQKYFSIGLNNILVTHETLIGKYL 315 Query: 309 AEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNK 368 +ED+ + E+ EI + G++I L+ I +I+++ +L ++ + YIRNTL DKN+ Sbjct: 316 SEDLRDPESDEILAKIGEMITADMLQVINDLKIKNVNVLVINPQ-SGPYIRNTLFADKNQ 374 Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 DR+ AL DI+RV+RPG+ + AES+F LFFD+++YDLS VGR+KMN RL L+ +++ Sbjct: 375 DREAALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEI 434 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + +DI I++ILV+L++GKG IDDID+LGNRRVRSVGE+++NQ+R+GL+R+E+S+ E Sbjct: 435 TVLTIDDIKNIVRILVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRIEKSVIE 494 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGG 548 R+S+ D+D+VMP DL+N+K +VS V EFF +SQLSQ + N LS ITH RRLSALG GG Sbjct: 495 RMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG 554 Query: 549 VARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDG 608 ++R RAG E+RDVHPTHYGRICP ET EG NIGL++S+ ++AR+N +GFIE+PYR+V DG Sbjct: 555 LSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDG 614 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILVPREKIDFIDAS 667 VT++VVYLSA+EE I QANS +D+DG E + CR G ++V ++DFID + Sbjct: 615 YVTDEVVYLSAIEEGKYKIGQANSKVDQDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVT 674 Query: 668 PKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI 727 P QVVS+AASLIPFLENDD+NR LMG NMQRQAVPL+K EAPFVGTG+E VVAK SGA++ Sbjct: 675 PMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTEAPFVGTGVEGVVAKDSGASV 734 Query: 728 VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 +A GIVE+VD+ RIVIR++E + VDIY L+KFQ+SN NTC+NQ+PLVKVG Sbjct: 735 LALHDGIVERVDSNRIVIRTLE-QKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHY 793 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V++NDIIADGPSTD G++ALGRN+LVAF+PW+GYNFEDS+LISER+V EDVFTSIHIEEF Sbjct: 794 VKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEF 853 Query: 848 EVMARDTKLG 857 EV+ARDT+LG Sbjct: 854 EVIARDTRLG 863 >gi|56418633|ref|YP_145951.1| DNA-directed RNA polymerase subunit beta [Geobacillus kaustophilus HTA426] gi|261417599|ref|YP_003251281.1| DNA-directed RNA polymerase subunit beta [Geobacillus sp. Y412MC61] gi|297528474|ref|YP_003669749.1| DNA-directed RNA polymerase subunit beta [Geobacillus sp. C56-T3] gi|319765257|ref|YP_004130758.1| DNA-directed RNA polymerase subunit beta [Geobacillus sp. Y412MC52] gi|81348402|sp|Q5L405|RPOB_GEOKA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|56378475|dbj|BAD74383.1| DNA-directed RNA polymerase beta subunit [Geobacillus kaustophilus HTA426] gi|261374056|gb|ACX76799.1| DNA-directed RNA polymerase, beta subunit [Geobacillus sp. Y412MC61] gi|297251726|gb|ADI25172.1| DNA-directed RNA polymerase, beta subunit [Geobacillus sp. C56-T3] gi|317110123|gb|ADU92615.1| DNA-directed RNA polymerase, beta subunit [Geobacillus sp. Y412MC52] Length = 1190 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 445/964 (46%), Positives = 607/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGRLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI FSG LEF+ Y PK+ V++ RD+TYA PL++ +RLI K Sbjct: 51 EISPIEDFSGNLSLEFIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP +++ + +GK Y Sbjct: 102 ETGEVKEQDVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYYS---DKVDKNGKRGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 + +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 SATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L + K Sbjct: 219 NTLEKDNTDSTEKALI------EIYERLRPGEPPTLENAKNLLASRFFDPKRYDLASVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE I++ ET E+ EAG +ID ++L + + + + Sbjct: 273 YKINKKLHIKNRLFNQRLAETIIDPETKEVIAEAGAMIDRRTLNRLLPYLEKGVGL---- 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 T + D + ++ P D Sbjct: 329 ---------QTYRPAEGVVDGDISVQTIKIYAPNDP------------------------ 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 DGEKVINVIGNGFIAEDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A Sbjct: 476 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ + YL+A EE+N +AQAN L EDG+F EE V R Sbjct: 536 KVNKFGFIETPYRRVDPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVAR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+V R+++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EA Sbjct: 596 FRGENIVVKRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEA 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K GIVE+V+A I +R +E D +D YRL+KF Sbjct: 656 PIVGTGMEYVSAKDSGAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+VK GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++ Sbjct: 716 VRSNQGTCYNQRPIVKKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V EDV+TSIHIEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAE Sbjct: 776 IMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 836 VKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 178/523 (34%), Positives = 246/523 (47%), Gaps = 77/523 (14%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 705 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 763 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 764 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 823 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R +++ Sbjct: 824 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKARE-VRDTSLRVPHG 882 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 + K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 883 GGGI----------------VLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 926 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 927 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 986 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 987 IASPVFDGATEEDVWNILEEAGLARDAK----------------------------TVLY 1018 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1019 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1052 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+ Sbjct: 1053 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEA 1112 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 IV G + E G PESF VL+KE+Q+LG+ + + S + Sbjct: 1113 IVKGENIPEPGVPESFKVLIKELQSLGMDVTILTSDEQEVNME 1155 >gi|295401928|ref|ZP_06811891.1| DNA-directed RNA polymerase, beta subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312109253|ref|YP_003987569.1| DNA-directed RNA polymerase subunit beta [Geobacillus sp. Y4.1MC1] gi|294976058|gb|EFG51673.1| DNA-directed RNA polymerase, beta subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311214354|gb|ADP72958.1| DNA-directed RNA polymerase, beta subunit [Geobacillus sp. Y4.1MC1] Length = 1190 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 443/964 (45%), Positives = 604/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGRLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYKWFL----------DEGLREMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI FSG LEF+ Y PK+ V++ RD+TYA PL++ +RLI K Sbjct: 51 EISPIEDFSGNLSLEFIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP +++ + +GK + Sbjct: 102 ETGEVKEQDVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYYSEKVDK---NGKRGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 + +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 SATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE IE+ K L K Sbjct: 219 NTLEKDNTDSTEKALI------EIYERLRPGEPPTIENAKNLLISRFFDPKRYDLASVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGE+ E G ++D ++L I + + Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEVIAEKGTIVDRRTLNRILPYLENGVGL---- 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++ L ++ P D Sbjct: 329 ---------RVHKPFGGVVEEEIALQSIKIYAPNDP------------------------ 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 DGEQVINVISNGYIAEDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A Sbjct: 476 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ + YL+A EE+N +AQAN L EDG+F EE V R Sbjct: 536 KVNKFGFIETPYRRVDPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVAR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+V R+++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EA Sbjct: 596 FRGENIVVKRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEA 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 P VGTGME V A+ SGAA++ K GIVE+V+A I +R +E D +D YRL+KF Sbjct: 656 PIVGTGMEYVSARDSGAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+VK GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++ Sbjct: 716 VRSNQGTCYNQRPIVKKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V EDV+TSIHIEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAE Sbjct: 776 IMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 836 VKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 181/535 (33%), Positives = 251/535 (46%), Gaps = 79/535 (14%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 705 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 763 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 764 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 823 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R +++ Sbjct: 824 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKARE-VRDTSLRVPHG 882 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 + K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 883 GGGI----------------VLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 926 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 927 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 986 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 987 IASPVFDGATEEDVWNILEEAGMPRDAK----------------------------TVLY 1018 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1019 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1052 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+ Sbjct: 1053 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEA 1112 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM--EEIPDFNKCE 1384 IV G + E G PESF VL+KE+Q+LG+ + + S K +E D + + Sbjct: 1113 IVKGENIPEPGVPESFKVLIKELQSLGMDVTILTSDEKEINMENFDEEDDVHSAD 1167 >gi|138893777|ref|YP_001124230.1| DNA-directed RNA polymerase subunit beta [Geobacillus thermodenitrificans NG80-2] gi|196251033|ref|ZP_03149715.1| DNA-directed RNA polymerase, beta subunit [Geobacillus sp. G11MC16] gi|158513825|sp|A4IJI1|RPOB_GEOTN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|134265290|gb|ABO65485.1| DNA-directed RNA polymerase beta subunit [Geobacillus thermodenitrificans NG80-2] gi|196209505|gb|EDY04282.1| DNA-directed RNA polymerase, beta subunit [Geobacillus sp. G11MC16] Length = 1190 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 451/964 (46%), Positives = 605/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ FK Sbjct: 1 MTGRLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFK 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI FSG LEF+ Y PK+ V++ RD+TYA PL++ +RLI K Sbjct: 51 EISPIEDFSGNLSLEFIDYSLGEPKYSVEEAKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP +++ + +GK Y Sbjct: 102 ETGEVKEQDVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYYS---DKVDKNGKRGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 + +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 SATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L + K Sbjct: 219 NTLEKDNTDSTEKALI------EIYERLRPGEPPTLENAKSLLASRFFDPKRYDLASVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE I + ETGEI EAG +ID ++L + + Sbjct: 273 YKINKKLHIKNRLFNQRLAETIADPETGEIIAEAGTMIDRRTLNRLLPYLEK-------- 324 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 Y V D + ++ P D V Sbjct: 325 GAGLQTYRPTEGVADGQIS-----VQTVKIYAPNDPDNEKV------------------- 360 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 361 -----INIIGNGFIAEDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDANTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A Sbjct: 476 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V GKVT+ + YL+A EE+N +AQAN L EDG+F EE V R Sbjct: 536 KVNKFGFIETPYRRVDPETGKVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVIAR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+V R+++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EA Sbjct: 596 FRGENIVVKRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLQPEA 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAAI+ K GIVE+V+A I +R +E D +D YRL+KF Sbjct: 656 PIVGTGMEYVSAKDSGAAIICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+VK GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++ Sbjct: 716 VRSNQGTCYNQRPIVKKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V EDV+TSIHIEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAE Sbjct: 776 IMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 836 VKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 178/523 (34%), Positives = 246/523 (47%), Gaps = 77/523 (14%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 705 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 763 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 764 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 823 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R +++ Sbjct: 824 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKARE-VRDTSLRVPHG 882 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 + K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 883 GGGI----------------VLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 926 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 927 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 986 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 987 IASPVFDGATEEDVWNILEEAGMARDAK----------------------------TVLY 1018 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1019 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1052 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+ Sbjct: 1053 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEA 1112 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 IV G + E G PESF VL+KE+Q+LG+ + + S + Sbjct: 1113 IVKGENIPEPGVPESFKVLIKELQSLGMDVTILTSDEQEINME 1155 >gi|239825685|ref|YP_002948309.1| DNA-directed RNA polymerase subunit beta [Geobacillus sp. WCH70] gi|239805978|gb|ACS23043.1| DNA-directed RNA polymerase, beta subunit [Geobacillus sp. WCH70] Length = 1185 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 450/964 (46%), Positives = 605/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ FK Sbjct: 1 MTGRLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYKWFL----------DEGLREMFK 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI FSG LEF+ Y PK+ V++ RD+TYA PL++ +RLI K Sbjct: 51 EISPIEDFSGNLSLEFIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP +++ + +GK Y Sbjct: 102 ETGEVKEQDVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYYSEKVDK---NGKRGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 + +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 SATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE IE+ K L K Sbjct: 219 NTLEKDNTDSTEKALI------EIYERLRPGEPPTIENAKNLLISRFFDPKRYDLASVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +VN ETGEI E G +ID ++L I + + Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVNPETGEIIAEKGTLIDRRTLNRILPYLENGVGL---- 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++ L ++ P D Sbjct: 329 ---------QVYKPVGGVVDEEFALQSIKIYSPND------------------------A 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 DGEKVINVISNGYIAEDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S DI+++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDINTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A Sbjct: 476 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ + YL+A EE+N IAQAN L EDG+F EE V R Sbjct: 536 KVNKFGFIETPYRRVDPETGRVTDQIDYLTADEEDNYVIAQANVPLAEDGTFLEENVVAR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+V R+++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EA Sbjct: 596 FRGENIVVKRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEA 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K GIVE+V+A I +R +E D +D YRL+KF Sbjct: 656 PIVGTGMEYVSAKDSGAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+VK GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++ Sbjct: 716 VRSNQGTCYNQRPIVKKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V EDV+TSIHIEE+E +RDTKLGPEEITRDIPNV E+ L+N+DE GI+ +GAE Sbjct: 776 IMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALRNLDERGIVRIGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 836 VKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 181/530 (34%), Positives = 245/530 (46%), Gaps = 77/530 (14%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 705 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 763 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 764 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALRN 823 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R Sbjct: 824 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAR------------- 870 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 871 ----EVRDTSLRVPHGGGGIVLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 926 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 927 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 986 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 987 IASPVFDGAMEEDVWNILEEAGMPRDAK----------------------------TVLY 1018 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1019 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1052 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+ Sbjct: 1053 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEA 1112 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 IV G + E G PESF VL+KE+Q+LG+ + + S K D + Sbjct: 1113 IVKGENIPEPGVPESFKVLIKELQSLGMDVTILTSDEKEINMENFDEDDD 1162 >gi|212637946|ref|YP_002314466.1| DNA-directed RNA polymerase subunit beta [Anoxybacillus flavithermus WK1] gi|212559426|gb|ACJ32481.1| DNA-directed RNA polymerase beta subunit [Anoxybacillus flavithermus WK1] Length = 1189 Score = 886 bits (2290), Expect = 0.0, Method: Composition-based stats. Identities = 444/964 (46%), Positives = 609/964 (63%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++ RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVEESKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIVDLLGDNEYIR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTESTEKALL------EIYERLRPGEPPTVENAKSLLISRFFDPKRYDLASVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L G +AE +V+ ETGE+ E G V+D ++L+ I + Sbjct: 276 YKINKKLHIKNRLFGQRLAETLVHPETGEVIAEKGTVLDRRTLDRI------------LP 323 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + IR + + AL I ++ P D Sbjct: 324 ELEKGIGIRKYQPLGGVVEDEFALQAI-KIYAPNDP------------------------ 358 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G + + N P+ V+HI DIIA I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 359 DGEKVITVISNGYIPETVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 418 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 419 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTN 478 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A Sbjct: 479 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYA 538 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V GKVTN + YL+A EE+N +AQAN + EDG+F EE V R Sbjct: 539 KVNKFGFIETPYRRVDPETGKVTNQIDYLTADEEDNYVVAQANVPIAEDGTFLEENVVAR 598 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+V R+++D++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPL++ EA Sbjct: 599 FRGENIVVKRDRVDYVDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMQPEA 658 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K GIVE+V+A I +R +E D +D YRL+KF Sbjct: 659 PIVGTGMEYVAAKDSGAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKF 718 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+VK GD V + +I+ADGPS + G+LALGRN+LVAFM W GYN+ED++ Sbjct: 719 VRSNQGTCYNQRPIVKAGDIVEKGEILADGPSMEKGELALGRNVLVAFMTWDGYNYEDAI 778 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GI+ +GAE Sbjct: 779 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIVRIGAE 838 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++F R Sbjct: 839 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFTR 898 Query: 948 HGID 951 D Sbjct: 899 EDGD 902 Score = 503 bits (1295), Expect = e-139, Method: Composition-based stats. Identities = 186/535 (34%), Positives = 263/535 (49%), Gaps = 79/535 (14%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 708 GDLDKYRLLKFVRSNQGTCYNQRPIVKAGDIVEKGEILADGPS-MEKGELALGRNVLVAF 766 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDK----D 972 + D + +S +V ++ I++ E + E + RD + Sbjct: 767 MTWDGYNYEDAII-----MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE 821 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD--LISEYPRSQWWQFAVQDEK 1030 D LD R+ + + + G K T L+++ L+ + + + Sbjct: 822 DALRNLDERGIVRIGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLR 881 Query: 1031 VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKM 1090 V + K+ + GD++PPGV ++V+V++ KR I GDKM Sbjct: 882 VPHGGGGIV-------------LDVKVFTREDGDELPPGVNQLVRVYIVQKRKISEGDKM 928 Query: 1091 AGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGK 1150 AGRHGNKG++SRILP EDMPFL DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG Sbjct: 929 AGRHGNKGVISRILPEEDMPFLPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARKLGL 988 Query: 1151 KIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPV 1210 + S + D D+ Sbjct: 989 HVASPVFDGAREEDVW-------------------------------------------- 1004 Query: 1211 FDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYAR 1270 A E A + +++LYDG TGEPFD V+VG +YM+KL HMV DK++AR Sbjct: 1005 ---ATLEE-------AGMARDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHAR 1054 Query: 1271 STGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYE 1330 STG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE Sbjct: 1055 STGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYE 1114 Query: 1331 SIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 +IV G + E G PESF VL+KE+Q+LG+ + + +S K + D + + Sbjct: 1115 AIVKGENVPEPGVPESFKVLIKELQSLGMDVTVLSSDEKEISMENFGEDDDVQPV 1169 >gi|20808668|ref|NP_623839.1| DNA-directed RNA polymerase subunit beta [Thermoanaerobacter tengcongensis MB4] gi|41018079|sp|Q8R7U6|RPOB_THETN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|20517303|gb|AAM25443.1| DNA-directed RNA polymerase beta subunit/140 kD subunit (split gene in Mjan, Mthe, Aful) [Thermoanaerobacter tengcongensis MB4] Length = 1234 Score = 877 bits (2267), Expect = 0.0, Method: Composition-based stats. Identities = 462/953 (48%), Positives = 613/953 (64%), Gaps = 64/953 (6%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 R R F K E+++IPDLIEVQK SY FL EGL+ F+ + PI +F+G Sbjct: 10 RTRMSFAKIDEVLEIPDLIEVQKKSYQWFL----------EEGLKEVFQEISPIESFTGN 59 Query: 72 AMLEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 LEFV Y + PK+ V++C RD TYA PLK+ +RL + +IKE + Sbjct: 60 LALEFVDYRLENNPKYSVEECKDRDTTYAAPLKVKVRLT---------NRETGEIKESEV 110 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 +MGDLPLMT GTF+I G +R++VSQL RSPG+++D + GK L +IP++G Sbjct: 111 FMGDLPLMTDKGTFIINGAERVIVSQLVRSPGVYYDQQFDKF---GKKLIFATVIPNRGA 167 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPL 249 W++ E DS D+I+VRIDR RKVP+T L A+G +++ +IL + D Sbjct: 168 WLEYEEDSNDVIYVRIDRTRKVPITVLLRAIGYNTDIQILDLLGEEEKLKATLDKDTTKS 227 Query: 250 SAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD------- 301 L+ K + GE +ES + L + L K + +G Sbjct: 228 EEEALIEIYK------RLRPGEPPTVESARSLFNALFFDPKRYDLAKVGRYKFNKKLALK 281 Query: 302 -CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + A+ IVN TGE+ +E G+ I + EEI + I ++ IL V Sbjct: 282 ARIANHKSAKRIVNPITGEVLVEEGEKITREKAEEIQNCGINEVEILVDGKVVKVVGNNT 341 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 +DI + P DVS+ ++ E + + + D + +N Sbjct: 342 --------------VDINKYPMPYDVSSLNIKELV--NVRVLREILDNFSDEEAVLNEIK 385 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 N +HI K+DI+A I ++L +G G +DDID+LGNRRVRSVGE+L+NQ+R+GL Sbjct: 386 NRMDELVPKHITKDDIVATISYQLNLTHGVGFVDDIDHLGNRRVRSVGELLQNQFRIGLA 445 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 R+ER +KER++ D++ V PQ+LIN +PVV+A+ EFF SSQLSQ + N LS +TH RR Sbjct: 446 RLERVVKERMTIQDVNEVTPQNLINIRPVVAAIREFFGSSQLSQFMDQTNPLSELTHKRR 505 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +SALG GG++R RAG E+RDVH +HYGRICP ET EG NIGL++SLT++ARVN YGFIET Sbjct: 506 VSALGPGGLSRERAGFEVRDVHYSHYGRICPIETPEGPNIGLITSLTTYARVNEYGFIET 565 Query: 601 PYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 PYRKV VT+++VY++A EE+ IAQAN LDE+ F + V CR E I VP Sbjct: 566 PYRKVDKATGTVTDEIVYMTADEEDEYIIAQANEPLDENNRFINDRVVCRLREEIISVPP 625 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 ++DF+D SPKQ+VS++ASLIPFLENDD+NR LMG NMQRQAVPLLK EAP VGTGME Sbjct: 626 TEVDFMDVSPKQIVSVSASLIPFLENDDANRALMGSNMQRQAVPLLKPEAPIVGTGMEYK 685 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SGA I+AK GIVE+V A ++VIR+ +G D Y L+KF+RSNQ TC+NQ Sbjct: 686 AAVDSGAVILAKNDGIVEKVTADKVVIRTKDGKRDE-------YHLLKFKRSNQGTCINQ 738 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V GDEV++ +I DGPSTD G+LALG+N+LV FMPW GYN+ED++LISE +V +D Sbjct: 739 RPIVNEGDEVKKGQVICDGPSTDHGELALGKNVLVGFMPWEGYNYEDAILISEELVMDDS 798 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 TSIHIEE++ ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV GDILVGK+ Sbjct: 799 LTSIHIEEYDAEARDTKLGPEEITREIPNVGEDALKDLDERGIIRIGAEVRAGDILVGKV 858 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG VVDV++++R D Sbjct: 859 TPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKVYSRENGD 911 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 275/1142 (24%), Positives = 423/1142 (37%), Gaps = 134/1142 (11%) Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSD---CLCGLYVAEDIVNGETG----------EIY 321 + G + +G + + + V+ G+ D G + V G ++ Sbjct: 120 DKGTFIINGAERVIVSQLVRSPGVYYDQQFDKFGKKLIFATVIPNRGAWLEYEEDSNDVI 179 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 D + + + + + I +D + ++ TL D K ++AL++IY+ + Sbjct: 180 YVRIDRTRKVPITVLLRAIGYNTDIQILDLLGEEEKLKATLDKDTTKSEEEALIEIYKRL 239 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 RPG+ T A S+FN LFFD +YDL+ VGR K N +L L + K Sbjct: 240 RPGEPPTVESARSLFNALFFDPKRYDLAKVGRYKFNKKLALKA--------RIANHKSAK 291 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 +V+ G+ +++ + + + + N+ + + + + MP Sbjct: 292 RIVNPITGEVLVEEGEKITREKAEEIQNCGINEVEILVDGKVVKVVGNNTVDINKYPMPY 351 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAG-VEMRD 560 D+ + + V L + L+ I R+ L + + Sbjct: 352 DVSSL-NIKELVNVRVLREILDNFSDEEAVLNEI--KNRMDELVPKHITKDDIVATISYQ 408 Query: 561 VHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAM 620 ++ TH G+ V S+ + + R V + DV ++ Sbjct: 409 LNLTHGVGFVDDIDHLGN--RRVRSVGELLQNQFRIGLARLERVVKERMTIQDVNEVTPQ 466 Query: 621 EEENR--YIA-----QANSSLDEDGSFTEELVFCRCAGEEILV-------PREKIDFIDA 666 N +A +S L + T L + R + D Sbjct: 467 NLINIRPVVAAIREFFGSSQLSQFMDQTNPLSELTHKRRVSALGPGGLSRERAGFEVRDV 526 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF-VGTGMESVVAKSSGA 725 I P N L + + TG Sbjct: 527 HYSHYGRICPIETPEGPNIGLITSLTTYARVNEYGFIETPYRKVDKATG----TVTDEIV 582 Query: 726 AIVAKRAGIVEQVDAIRIVIRSV--EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 + A A + + D +I + + + Q V Sbjct: 583 YMTADEEDEYIIAQANEPLDENNRFINDRVVCRLREEIISVPPTEVDFMDVSPKQIVSVS 642 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 + A+ +L P G E + V I Sbjct: 643 ASLIPFLENDDANRALMGSNMQRQAVPLLKPEAPIVGTGMEYKAAVDSGAVILAKNDGIV 702 Query: 844 -IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 + + TK G + + I++ I+ G EV G ++ + Sbjct: 703 EKVTADKVVIRTKDGKRDEYHLLKFKRSNQGTCINQRPIVNEGDEVKKGQVICDGPST-D 761 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI----- 957 + + +L + + D L V+D + + H + + + Sbjct: 762 HGELALGKNVLVGFMPWEGYNYEDAILI----SEELVMDDSLTSIHIEEYDAEARDTKLG 817 Query: 958 -SVEREQIELLARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLI 1013 +I + D DE+ I+ R +IL G+ G L + Sbjct: 818 PEEITREIPNVGEDALKDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIF 877 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRV 1073 E R E K+ + GD++PPGV ++ Sbjct: 878 GEKAR-----------------EVRDTSLRVPHGESGIVVDVKVYSRENGDELPPGVNQM 920 Query: 1074 VKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNV 1133 V+VFVA KR I GDKMAGRHGNKG++SRILP EDMPFL DGTP+ I LNPLGVPSRMN+ Sbjct: 921 VRVFVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPFLPDGTPLQICLNPLGVPSRMNI 980 Query: 1134 GQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSV 1193 GQ+ ETHLG LG I S + D DI L + S + D Sbjct: 981 GQVLETHLGLVAKALGWYIASPVFDGATEKDIEELLAK--------------SGFSPDGK 1026 Query: 1194 LRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGY 1253 +++ G++ GEPFD VTVGY Sbjct: 1027 VQL---------------------------------YDGRT-------GEPFDNKVTVGY 1046 Query: 1254 IYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQE 1313 +YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE Sbjct: 1047 MYMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQE 1106 Query: 1314 MLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAK 1373 MLT+KSDDV GR + YE+IV G + E G PESF VLVKE+Q+L L + + + Sbjct: 1107 MLTVKSDDVTGRVKAYEAIVKGENIPEPGIPESFKVLVKELQSLALDVKVITEDGQEIPI 1166 Query: 1374 ME 1375 E Sbjct: 1167 KE 1168 >gi|229542212|ref|ZP_04431272.1| DNA-directed RNA polymerase, beta subunit [Bacillus coagulans 36D1] gi|229326632|gb|EEN92307.1| DNA-directed RNA polymerase, beta subunit [Bacillus coagulans 36D1] Length = 1186 Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats. Identities = 434/964 (45%), Positives = 601/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M+ +V G R R+ + + EI+++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 1 MSHQLVQYGRHRQRRSYARIKEILELPNLIEIQTASYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ +D+C RD+TYA PL++ +RL+ K Sbjct: 51 DISPIEDFAGNLSLEFIDYSLGEPKYSIDECKERDVTYAAPLRVKVRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F+ + +GK Y Sbjct: 102 ETGEVKDQDVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFNSKMDK---NGKYGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+ +VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 TATVIPNRGAWLEYETDAKDVAYVRIDRTRKLPITVLLRALGFGSDQEIIDLIGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK---- 294 + + L+ + GE +E+ K L K + Sbjct: 219 NTLEKDNTESTEKALL------EIYERLRPGEPPTVENAKSLLISRFFDPKRYDLANVGR 272 Query: 295 ----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L G +AE I + ETGEI E G V+D ++L++I + + Sbjct: 273 YKMNKKLHLKFRLFGQRLAESIADPETGEIIAEEGTVLDRRTLDKIVPFLEKGLK----- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 T D L ++ P D Sbjct: 328 --------FETYSQTGGVVDDDVTLQSIKIYAPID------------------------- 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N + ++HI DI+A I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 355 DNEKVINVIGNAYVDESIKHITPADIVASISYFFNLLHGVGNTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S DI+++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDINTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+++A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT + YL+A EE+N +AQAN+ LDE+G F ++ V+ R Sbjct: 535 KVNRFGFIETPYRRVDPDTGRVTEHIDYLTADEEDNYVVAQANAQLDENGFFVDDEVYAR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+V +++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 595 FRGENIVVKTDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPQA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K GIVE V+A I +R ++ D +D YRL KF Sbjct: 655 PIVGTGMEYVNAKDSGAALICKHDGIVEHVEAREIWVRRVIDVDGQEVKGDLDKYRLQKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN C+NQRP+VK GD V + +I+ADG S D G+LALG+N+LVAFM W GYN+ED++ Sbjct: 715 KRSNNGMCINQRPIVKKGDRVVKGEILADGQSMDHGELALGQNVLVAFMTWEGYNYEDAI 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SE++V EDV+TSIHIEE+E ARDTKLGPEE+TRDIPNV E+ LKN+DE GI+ +GAE Sbjct: 775 IMSEKLVKEDVYTSIHIEEYESEARDTKLGPEEMTRDIPNVGEDALKNLDERGIVRIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++F R Sbjct: 835 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFTR 894 Query: 948 HGID 951 D Sbjct: 895 EAGD 898 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 178/535 (33%), Positives = 250/535 (46%), Gaps = 79/535 (14%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R I++ I+ G V G+IL + + + +L A Sbjct: 704 GDLDKYRLQKFKRSNNGMCINQRPIVKKGDRVVKGEILADGQS-MDHGELALGQNVLVAF 762 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE--QIELLARDKD-- 972 + + D + V V + + + + E I + D Sbjct: 763 MTWEGYNYEDAIIMSEKLVKEDVYTSIHIEEYESEARDTKLGPEEMTRDIPNVGEDALKN 822 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R +++ Sbjct: 823 LDERGIVRIGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKARE-VRDTSLRVPHG 881 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 + K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 882 GGGI----------------VLDVKVFTREAGDELPPGVNQLVRVYIVQKRKIHQGDKMA 925 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTPV I+LNPLGVPSRMN+GQ+ E HLG A LG Sbjct: 926 GRHGNKGVISRILPEEDMPFLPDGTPVQIMLNPLGVPSRMNIGQVLELHLGMAAKKLGLH 985 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 + + + D D+ T ++ Sbjct: 986 VATPVFDGAREEDVWETIEEAGMARDAK----------------------------TVLY 1017 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1018 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1051 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+ Sbjct: 1052 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEA 1111 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAK--MEEIPDFNKCE 1384 IV G + E G PESF VL+KE+Q+LGL + + + + +E+ D N+ + Sbjct: 1112 IVKGENVPEPGVPESFKVLIKELQSLGLDVKILSGDDEEIEMRDLEDDDDLNQAD 1166 >gi|311029041|ref|ZP_07707131.1| DNA-directed RNA polymerase subunit beta [Bacillus sp. m3-13] Length = 1185 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 439/964 (45%), Positives = 602/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++D+P+LIE+Q +SY FL +EGL+ F Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLDLPNLIEIQTSSYQWFL----------DEGLREMFH 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++ RD+TY+ PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYSVEESKERDVTYSAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD PLMT GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 102 ETGEVKDQDVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 + +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 SATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDLLGENEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + L+ + GE +E+ K L K Sbjct: 219 NTLDKDNTESTEKALL------EIYERLRPGEPPTVENAKSLLESRFFDPKRYDLASVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI +E G ++D ++L+ I + I + Sbjct: 273 YKINKKLHIKNRLFNQRIAETLVDPETGEIIVEKGTLLDRRTLDRILPNIEDGIGL---- 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + + ++ P D Sbjct: 329 ---------TSFHPHGGVVEDEVPMQSIKIYAPND------------------------A 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G ++ + N + V+HI DIIA I DL +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGEKEIVVLGNGFIEEKVKHIAPADIIASISYFFDLLHGVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 476 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ + YL+A EE+N +AQAN+ L EDG+F +E V R Sbjct: 536 KVNKFGFIETPYRRVDPETGRVTDQIDYLTADEEDNYVVAQANARLGEDGTFLDENVVSR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE +V E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ E+ Sbjct: 596 FRGENTVVVSERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLQPES 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K G+VE+V+A + +R E D +D YR++KF Sbjct: 656 PIVGTGMEHVSAKDSGAAVICKHPGVVERVEAREVWVRRMEEVDGQQVKGNLDKYRMLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGD V + +I+ADGPS + G+LALGRN++V FM W GYN+ED++ Sbjct: 716 IRSNQGTCYNQRPIVSVGDVVTKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV EE LKN+D+ GII VGAE Sbjct: 776 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKNLDDRGIIRVGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 836 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 175/574 (30%), Positives = 257/574 (44%), Gaps = 77/574 (13%) Query: 816 MPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 M + +I + +V + + E + G + R + + Sbjct: 662 MEHVSAKDSGAAVICKHPGVVERVEAREVWVRRMEEVDGQQVKGNLDKYRMLKFIRSNQG 721 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 ++ I+ VG V G+IL + + + ++ + D + Sbjct: 722 TCYNQRPIVSVGDVVTKGEILADGPS-MEKGELALGRNVMVGFMTWDGYNYEDAIIMS-- 778 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 + K++ S+ E+ E ARD + R+I + E L Sbjct: 779 --------------ERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKNL 824 Query: 994 NAVSGPKG---FKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 + + K +L + + + + ++ Sbjct: 825 DDRGIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGG 884 Query: 1051 DR-FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDM 1109 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDM Sbjct: 885 GIVLDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDM 944 Query: 1110 PFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLR 1169 P+L DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D D+ Sbjct: 945 PYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARTLGIHVASAVFDGAREEDVWSTL 1004 Query: 1170 SFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLD 1229 T ++DG Sbjct: 1005 EEAGMARDAK----------------------------TVLYDG---------------- 1020 Query: 1230 ESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNR 1289 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1021 ----------RTGEPFDSRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQF 1070 Query: 1290 GGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF V Sbjct: 1071 GGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKV 1130 Query: 1350 LVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKC 1383 L+KE+Q+LG+ + + + + + D + Sbjct: 1131 LIKELQSLGMDVKILSGDEEEIEMRDLEEDEEQA 1164 >gi|52078601|ref|YP_077392.1| DNA-directed RNA polymerase subunit beta [Bacillus licheniformis ATCC 14580] gi|52783963|ref|YP_089792.1| DNA-directed RNA polymerase subunit beta [Bacillus licheniformis ATCC 14580] gi|81667235|sp|Q65PB5|RPOB_BACLD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|52001812|gb|AAU21754.1| RNA polymerase (beta subunit) [Bacillus licheniformis ATCC 14580] gi|52346465|gb|AAU39099.1| RpoB [Bacillus licheniformis ATCC 14580] Length = 1193 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 435/964 (45%), Positives = 604/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++ RD+TY+ PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD P+MT GTF+I G +R++VSQL RSP ++F G+ +GK + Sbjct: 102 ETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGENEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + L+ + GE +E+ K L K Sbjct: 219 NTLDKDNTENTDKALL------EIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLASVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI E G ++D ++L++ V Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAEKGAILDRRTLDK-------------VL 319 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N L + + L ++ P D Sbjct: 320 PYLENGIGFKKLYPNGGVVEDEVTLQSIKIYAPTD------------------------Q 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + V++I DIIA I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGEQTINVIGNAYIEEGVKNITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 476 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V GKVT + YL+A EE+N +AQAN+ L++DGSF ++ + R Sbjct: 536 KVNRFGFIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANARLNDDGSFVDDSIVAR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE +VP++++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ E+ Sbjct: 596 FRGENTVVPKDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPES 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ + GIVE+V+A I +R E D +D Y L+KF Sbjct: 656 PIVGTGMEYVSAKDSGAAVICRHPGIVERVEAKNIWVRRYEEVDGQKVKGNLDKYSLLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGDEV + +I+ADGPS + G+LALGRN++V FM W GYN+ED++ Sbjct: 716 VRSNQGTCYNQRPIVSVGDEVEKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 776 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 836 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 264/1179 (22%), Positives = 431/1179 (36%), Gaps = 137/1179 (11%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 95 KVRLINKETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + +D + Sbjct: 155 KKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-IDLIGE 213 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS----- 409 N Y+RNTL D ++ ALL+IY +RPG+ T A+S+ + FFD +YDL+ Sbjct: 214 NEYLRNTLDKDNTENTDKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLASVGRY 273 Query: 410 ------TVGRVKMNMRL--NLDTPDDVRHIRKEDIIAIIKILVD----LRNGKGTIDDID 457 + N RL L P+ + ++ I + L L NG G Sbjct: 274 KINKKLHIKNRLFNQRLAETLVDPETGEILAEKGAILDRRTLDKVLPYLENGIGFKKLYP 333 Query: 458 NLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFF 517 N G + +K Y E++I ++ + V + +S Sbjct: 334 NGGVVEDEVTLQSIKI-YAPTDQEGEQTINVIGNAYIEEGVKNITPSDIIASISYFFNLL 392 Query: 518 CSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEG 577 + +H+ + + L + G++R V R + Sbjct: 393 HGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIR 452 Query: 578 HNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDED 637 I + ++++ + TN + L+ Sbjct: 453 PVIASIKEFFGSSQLSQF------------MDQTNPLAELT------------------H 482 Query: 638 GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNM 696 L E + + + + I + + S + Sbjct: 483 KRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGF 542 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAI----VAKRAGIVEQVDAIRIVIRSVEGDL 752 + E V ++ + A + A+ VD + E + Sbjct: 543 IETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANARLNDDGSFVDDSIVARFRGENTV 602 Query: 753 DPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 P + K S C+ + +D ++ A+ Sbjct: 603 VPKDRVDYMDVSPKQVVSAATACIP---------FLENDDSNRALMGANMQRQAVPLMQP 653 Query: 813 VAFMPWHGYNFEDS-------MLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDI 865 + + G + + + +V +I + +E + G + + Sbjct: 654 ESPIVGTGMEYVSAKDSGAAVICRHPGIVERVEAKNIWVRRYEEVDGQKVKGNLDKYSLL 713 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 V ++ I+ VG EV G+IL + + + ++ + Sbjct: 714 KFVRSNQGTCYNQRPIVSVGDEVEKGEILADGPS-MEKGELALGRNVMVGFMTWDGYNYE 772 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSR 985 D + +S +V ++ I++ E + E + RD + RN+ R Sbjct: 773 DAII-----MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER 827 Query: 986 LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 I G G K T ++ R F + +V+ + Sbjct: 828 -GIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGI 886 Query: 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILP 1105 K+ + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++S+ILP Sbjct: 887 I------LDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILP 940 Query: 1106 CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI 1165 EDMP+L DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D D+ Sbjct: 941 EEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARRLGLHVASPVFDGAREEDV 1000 Query: 1166 SPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225 T ++DG Sbjct: 1001 WETLEEAGMSRDAK----------------------------TVLYDG------------ 1020 Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGG Sbjct: 1021 --------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGG 1066 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G++ E G PE Sbjct: 1067 KAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPE 1126 Query: 1346 SFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 SF VL+KE+Q+LG+ + + +S + + D + + Sbjct: 1127 SFKVLIKELQSLGMDVKILSSDEEEIEMRDLEDDEDAKQ 1165 >gi|167036793|ref|YP_001664371.1| DNA-directed RNA polymerase subunit beta [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115215|ref|YP_004185374.1| DNA-directed RNA polymerase subunit beta [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|254765313|sp|B0KCJ2|RPOB_THEP3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166855627|gb|ABY94035.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928306|gb|ADV78991.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1238 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 454/952 (47%), Positives = 612/952 (64%), Gaps = 64/952 (6%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F K E++++PDLIEVQK SY FL EGL+ F+ + PI +F+G Sbjct: 11 TRMSFAKIDEVLEMPDLIEVQKKSYKWFL----------EEGLREVFREISPIESFTGNL 60 Query: 73 MLEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 LEFV Y + PK+ V++C RD TYAVP+K+ +RL + +IKE ++ Sbjct: 61 ALEFVDYRLENNPKYSVEECKDRDTTYAVPMKVKVRLT---------NRETGEIKESEVF 111 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 MGD PLMT+ GTF+I G +R++VSQL RSPG++++ + GK L + +IP++G W Sbjct: 112 MGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYYEQQFDKF---GKKLISATVIPNRGAW 168 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ E DS DI++VRIDR RKVP+T L ALG ++ +IL + D Sbjct: 169 LEYEEDSNDIVYVRIDRTRKVPITVLLRALGYSTDIQILDLLGEEEKLKATLDKDTTKSE 228 Query: 251 AADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD-------- 301 L+ K + GE +ES K L L K + +G Sbjct: 229 EEALIEIYK------RLRPGEPPTVESAKSLLYALFFDAKRYDLAKVGRYKFNKKLALKT 282 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 + L A+ IVN TGEI +E G+ I ++ EEI + I + +L I N Sbjct: 283 RIANLKSAKKIVNPVTGEILVEEGEKISKEKAEEIQNCGINVVEVLV--EGKVVKVIGNN 340 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 +DI + P DVS+ ++ E++ L + D + +N N Sbjct: 341 T------------VDINKYPMPYDVSSLNIKEAV--NLSVLKEILDNFSDEEAVINEIKN 386 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 +HI K+DIIA I ++L +G G+IDDID+LGNRR+RSVGE+L+NQ+R+GL R Sbjct: 387 RMDELVPKHITKDDIIATISYQLNLTHGIGSIDDIDHLGNRRLRSVGELLQNQFRIGLAR 446 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER +KER++ D++ + PQ+LIN +PVV+A+ EFF SSQLSQ + N L+ +TH RR+ Sbjct: 447 LERVVKERMTIQDVNEITPQNLINIRPVVAAIREFFGSSQLSQFMDQTNPLAELTHKRRV 506 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH +HYGRICP ET EG NIGL+ SLT++ARVN YGFIE P Sbjct: 507 SALGPGGLSRERAGFEVRDVHYSHYGRICPIETPEGPNIGLIGSLTTYARVNEYGFIEAP 566 Query: 602 YRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 YR+V VT+++VY++A EE+ IAQAN LDE+ F E V CR E I VP Sbjct: 567 YRRVDKTTGTVTDEIVYMTADEEDEYIIAQANEPLDENNRFINEKVVCRLKEEIIAVPPT 626 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 ++DF+D SPKQ+VS+A S+IPFLENDD+NR LMG NMQRQAVPL+K EAP +GTG+E Sbjct: 627 EVDFMDVSPKQIVSVATSMIPFLENDDANRALMGSNMQRQAVPLIKPEAPIIGTGIEYKA 686 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SG ++AK G+VE+V A ++VIR+ +G D Y L+KF+RSNQ TC+NQR Sbjct: 687 AVDSGVVVLAKNDGVVEKVAADKVVIRTKDGRRDE-------YNLLKFKRSNQGTCINQR 739 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P+V GDEV++ +I DGPSTD G+LALG+N+LV FMPW GYN+ED++LISE +V +D Sbjct: 740 PIVNEGDEVKKGQVICDGPSTDYGELALGKNVLVGFMPWEGYNYEDAILISEELVRDDSL 799 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEE++ ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV GDILVGK+T Sbjct: 800 TSIHIEEYDAEARDTKLGPEEITREIPNVGEDALKDLDERGIIRIGAEVTAGDILVGKVT 859 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 PKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG VVDV++++R D Sbjct: 860 PKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKVYSRENGD 911 Score = 529 bits (1363), Expect = e-147, Method: Composition-based stats. Identities = 266/1143 (23%), Positives = 437/1143 (38%), Gaps = 136/1143 (11%) Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSD---CLCGLYVAEDIVNGETG----------EIY 321 E G + +G + + + V+ G+ + G + V G +I Sbjct: 120 EKGTFIINGAERVIVSQLVRSPGVYYEQQFDKFGKKLISATVIPNRGAWLEYEEDSNDIV 179 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 D + + + + I +D + ++ TL D K ++AL++IY+ + Sbjct: 180 YVRIDRTRKVPITVLLRALGYSTDIQILDLLGEEEKLKATLDKDTTKSEEEALIEIYKRL 239 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 RPG+ T A+S+ LFFD+ +YDL+ VGR K N +L L + + K Sbjct: 240 RPGEPPTVESAKSLLYALFFDAKRYDLAKVGRYKFNKKLALK--------TRIANLKSAK 291 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 +V+ G+ +++ + + + + N + + + + MP Sbjct: 292 KIVNPVTGEILVEEGEKISKEKAEEIQNCGINVVEVLVEGKVVKVIGNNTVDINKYPMPY 351 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH--TRRLSALGQGGVARARAG-VEM 558 D+ + + E S L ++ ++ + + + R+ L + + Sbjct: 352 DVSSLN-----IKEAVNLSVLKEILDNFSDEEAVINEIKNRMDELVPKHITKDDIIATIS 406 Query: 559 RDVHPTH-YGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYL 617 ++ TH G I + + V L + + R V + DV + Sbjct: 407 YQLNLTHGIGSIDDIDHLGNRRLRSVGELL---QNQFRIGLARLERVVKERMTIQDVNEI 463 Query: 618 SAMEEENR--YIA-----QANSSLDEDGSFTEELVFCRCAGEEILV-------PREKIDF 663 + N +A +S L + T L + R + Sbjct: 464 TPQNLINIRPVVAAIREFFGSSQLSQFMDQTNPLAELTHKRRVSALGPGGLSRERAGFEV 523 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 D I P N L + + T + Sbjct: 524 RDVHYSHYGRICPIETPEGPNIGLIGSLTTYARVNEYGFIEAPYRRVDKT---TGTVTDE 580 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSV--EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 + A A + + + +I + + + Q Sbjct: 581 IVYMTADEEDEYIIAQANEPLDENNRFINEKVVCRLKEEIIAVPPTEVDFMDVSPKQIVS 640 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV----SED 837 V + A+ ++ P G E + +V ++ Sbjct: 641 VATSMIPFLENDDANRALMGSNMQRQAVPLIKPEAPIIGTGIEYKAAVDSGVVVLAKNDG 700 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 V + ++ + TK G + + I++ I+ G EV G ++ Sbjct: 701 VVEKVAADK---VVIRTKDGRRDEYNLLKFKRSNQGTCINQRPIVNEGDEVKKGQVICDG 757 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 + + + +L + + D L V D + + H + + + Sbjct: 758 PST-DYGELALGKNVLVGFMPWEGYNYEDAILI----SEELVRDDSLTSIHIEEYDAEAR 812 Query: 958 SVE---REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD--L 1012 + E + +D LD R+ + + + G K T L+++ L Sbjct: 813 DTKLGPEEITREIPNVGEDALKDLDERGIIRIGAEVTAGDILVGKVTPKGETELTAEERL 872 Query: 1013 ISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLR 1072 + + + +V + V K+ + GD++PPGV + Sbjct: 873 LRAIFGEKAREVRDTSLRVPHGESGIVV-------------DVKVYSRENGDELPPGVNQ 919 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 +V+VFVA KR I GDKMAGRHGNKG++SRILP EDMPFL DGTP+ I LNPLGVPSRMN Sbjct: 920 MVRVFVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPFLPDGTPLQICLNPLGVPSRMN 979 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ E HLG LG +I + + D DI L + S + D Sbjct: 980 IGQVLEVHLGLVAKALGWQIATPVFDGATEEDIQELLAK--------------SGFSPDG 1025 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 +++ G++ GEPFD VTVG Sbjct: 1026 KVQL---------------------------------YDGRT-------GEPFDNKVTVG 1045 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y+YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQ Sbjct: 1046 YMYMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQ 1105 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 E+LT+KSDDV GR + YE+IV G + E G PESF VLVKE+Q+L L + + + Sbjct: 1106 EILTVKSDDVSGRVKTYEAIVKGENIPEPGIPESFKVLVKELQSLALDVKVITEDNQEIP 1165 Query: 1373 KME 1375 E Sbjct: 1166 LKE 1168 >gi|170293434|gb|ACB12770.1| DNA-directed RNA polymerase [Geobacillus thermocatenulatus] Length = 1075 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 443/949 (46%), Positives = 600/949 (63%), Gaps = 78/949 (8%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 + + E++++P+LIE+Q +SY FL +EGL+ F+ + PI FSG LE Sbjct: 1 SYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFREISPIEDFSGNLSLE 50 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 F+ Y PK+ V++ RD+TYA PL++ +RLI K ++KEQ ++MGD Sbjct: 51 FIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLI---------NKETGEVKEQDVFMGDF 101 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 PLMT+ GTF+I G +R++VSQL RSP +++ + +GK Y+ +IP++G W++ E Sbjct: 102 PLMTETGTFIINGAERVIVSQLVRSPSVYYS---DKVDKNGKRGYSATVIPNRGAWLEYE 158 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADL 254 D+KD+++VRIDR RK+PVT L ALG S+ EI+ + + L Sbjct: 159 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLRNTLEKDNTDSTEKAL 218 Query: 255 MVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK--------GVKFLGITSDCLCG 305 + + GE +E+ K L + K + + L Sbjct: 219 I------EIYERLRPGEPPTLENAKSLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFN 272 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 +AE IV+ ETGE+ EAG +ID ++L + + + + Y V D Sbjct: 273 QRLAETIVDPETGEVIAEAGAMIDRRTLNRLLPYLEKGVGL--------QTYRPAEGVVD 324 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 D + ++ P D G +N+ N Sbjct: 325 G-----DISVQTIKIYAPNDP------------------------DGEKVINVIGNGFIA 355 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL RMER Sbjct: 356 EDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERV 415 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N L +TH RRLSALG Sbjct: 416 VRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLVELTHKRRLSALG 475 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A+VN +GFIETPYR+V Sbjct: 476 PGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKFGFIETPYRRV 535 Query: 606 --CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 G+VT+ + YL+A EE+N +AQAN L EDG+F EE V R GE I+V R+++D+ Sbjct: 536 DPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVARFRGENIVVKRDRVDY 595 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EAP VGTGME V AK S Sbjct: 596 MDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGTGMEYVSAKDS 655 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 GAA++ K GIVE+V+A I +R +E D +D YRL+KF RSNQ TC NQRP+V Sbjct: 656 GAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQGTCYNQRPIV 715 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++++SER+V EDV+TSI Sbjct: 716 KKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSI 775 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 776 HIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKG 835 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 + +T EE+LL AIFGEK +VRDTSLRVP G G V+DV++FNR D Sbjct: 836 MTELTAEERLLHAIFGEKTREVRDTSLRVPHGGGGIVLDVKVFNREDGD 884 Score = 354 bits (908), Expect = 7e-95, Method: Composition-based stats. Identities = 146/458 (31%), Positives = 202/458 (44%), Gaps = 77/458 (16%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 690 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 748 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 749 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 808 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R +++ Sbjct: 809 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKTRE-VRDTSLRVPHG 867 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 + K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 868 GGGI----------------VLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 911 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 912 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 971 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 972 IASPVFDGATGEDVWNILEEAGLARDAK----------------------------TVLY 1003 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1004 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1037 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1038 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1075 >gi|319649124|ref|ZP_08003332.1| DNA-directed RNA polymerase subunit beta [Bacillus sp. BT1B_CT2] gi|317388824|gb|EFV69643.1| DNA-directed RNA polymerase subunit beta [Bacillus sp. BT1B_CT2] Length = 1196 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 434/964 (45%), Positives = 604/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++ RD+TY+ PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD P+MT GTF+I G +R++VSQL RSP ++F G+ +GK + Sbjct: 105 ETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGENEYLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + L+ + GE +E+ K L K Sbjct: 222 NTLDKDNTENTDKALL------EIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLASVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI E G ++D ++L++ V Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAEKGAILDRRTLDK-------------VL 322 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N L + + L ++ P D Sbjct: 323 PYLENGIGFKKLYPNGGVVEDEVTLQSIKIYAPTD------------------------Q 358 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + V++I DIIA I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 359 EGEQTINVIGNAYIEEGVKNITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 418 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 419 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 478 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 479 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 538 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V GKVT + YL+A EE+N +AQAN+ L++DGSF ++ + R Sbjct: 539 KVNRFGFIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANARLNDDGSFVDDSIVAR 598 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE +VP++++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ E+ Sbjct: 599 FRGENTVVPKDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPES 658 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ + GIVE+V+A I +R E D +D Y L+KF Sbjct: 659 PIVGTGMEYVSAKDSGAAVICRHPGIVERVEAKNIWVRRYEEVDGQKVKGNLDKYSLLKF 718 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGDEV + +I+ADGPS + G+LALGRN++V FM W GYN+ED++ Sbjct: 719 VRSNQGTCYNQRPIVSVGDEVEKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAI 778 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 779 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 838 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 839 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 898 Query: 948 HGID 951 D Sbjct: 899 EDGD 902 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 264/1179 (22%), Positives = 431/1179 (36%), Gaps = 137/1179 (11%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 98 KVRLINKETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + +D + Sbjct: 158 KKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-IDLIGE 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS----- 409 N Y+RNTL D ++ ALL+IY +RPG+ T A+S+ + FFD +YDL+ Sbjct: 217 NEYLRNTLDKDNTENTDKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLASVGRY 276 Query: 410 ------TVGRVKMNMRL--NLDTPDDVRHIRKEDIIAIIKILVD----LRNGKGTIDDID 457 + N RL L P+ + ++ I + L L NG G Sbjct: 277 KINKKLHIKNRLFNQRLAETLVDPETGEILAEKGAILDRRTLDKVLPYLENGIGFKKLYP 336 Query: 458 NLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFF 517 N G + +K Y E++I ++ + V + +S Sbjct: 337 NGGVVEDEVTLQSIKI-YAPTDQEGEQTINVIGNAYIEEGVKNITPSDIIASISYFFNLL 395 Query: 518 CSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEG 577 + +H+ + + L + G++R V R + Sbjct: 396 HGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIR 455 Query: 578 HNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDED 637 I + ++++ + TN + L+ Sbjct: 456 PVIASIKEFFGSSQLSQF------------MDQTNPLAELT------------------H 485 Query: 638 GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNM 696 L E + + + + I + + S + Sbjct: 486 KRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGF 545 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAI----VAKRAGIVEQVDAIRIVIRSVEGDL 752 + E V ++ + A + A+ VD + E + Sbjct: 546 IETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANARLNDDGSFVDDSIVARFRGENTV 605 Query: 753 DPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 P + K S C+ + +D ++ A+ Sbjct: 606 VPKDRVDYMDVSPKQVVSAATACIP---------FLENDDSNRALMGANMQRQAVPLMQP 656 Query: 813 VAFMPWHGYNFEDS-------MLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDI 865 + + G + + + +V +I + +E + G + + Sbjct: 657 ESPIVGTGMEYVSAKDSGAAVICRHPGIVERVEAKNIWVRRYEEVDGQKVKGNLDKYSLL 716 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 V ++ I+ VG EV G+IL + + + ++ + Sbjct: 717 KFVRSNQGTCYNQRPIVSVGDEVEKGEILADGPS-MEKGELALGRNVMVGFMTWDGYNYE 775 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSR 985 D + +S +V ++ I++ E + E + RD + RN+ R Sbjct: 776 DAII-----MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER 830 Query: 986 LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 I G G K T ++ R F + +V+ + Sbjct: 831 -GIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGI 889 Query: 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILP 1105 K+ + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++S+ILP Sbjct: 890 I------LDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILP 943 Query: 1106 CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI 1165 EDMP+L DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D D+ Sbjct: 944 EEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARRLGLHVASPVFDGAREEDV 1003 Query: 1166 SPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225 T ++DG Sbjct: 1004 WETLEEAGMSRDAK----------------------------TVLYDG------------ 1023 Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGG Sbjct: 1024 --------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGG 1069 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G++ E G PE Sbjct: 1070 KAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPE 1129 Query: 1346 SFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 SF VL+KE+Q+LG+ + + +S + + D + + Sbjct: 1130 SFKVLIKELQSLGMDVKILSSDEEEIEMRDLEDDEDAKQ 1168 >gi|170293432|gb|ACB12769.1| DNA-directed RNA polymerase [Geobacillus vulcani] Length = 1076 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 445/949 (46%), Positives = 601/949 (63%), Gaps = 78/949 (8%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 + + E++++P+LIE+Q +SY FL +EGL+ FK + PI FSG LE Sbjct: 1 SYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFKEISPIEDFSGNLSLE 50 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 F+ Y PK+ V++ RD+TYA PL++ +RLI K ++KEQ ++MGD Sbjct: 51 FIDYSLGEPKYSVEEAKERDVTYAAPLRVKVRLI---------NKETGEVKEQDVFMGDF 101 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 PLMT+ GTF+I G +R++VSQL RSP +++ + +GK Y+ +IP++G W++ E Sbjct: 102 PLMTETGTFIINGAERVIVSQLVRSPSVYYS---DKVDKNGKRGYSATVIPNRGAWLEYE 158 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADL 254 D+KD+++VRIDR RK+PVT L ALG S+ EI+ + + L Sbjct: 159 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLRNTLEKDNTDSTEKAL 218 Query: 255 MVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK--------GVKFLGITSDCLCG 305 + + GE +E+ K L + K + + L Sbjct: 219 I------EIYERLRPGEPPTLENAKSLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFN 272 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 +AE I + ETGEI EAG +ID ++L + + + + Y V D Sbjct: 273 QRLAETIADPETGEIIAEAGAMIDRRTLNRLLPYLEKGVGL--------QTYRPAEGVVD 324 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 D + ++ P D G +N+ N Sbjct: 325 G-----DISVQTIKIYAPNDP------------------------DGEKVINVIGNGFIA 355 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL RMER Sbjct: 356 EDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERV 415 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N L+ +TH RRLSALG Sbjct: 416 VRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALG 475 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A+VN +GFIETPYR+V Sbjct: 476 PGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKFGFIETPYRRV 535 Query: 606 --CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 G+VT+ + YL+A EE+N +AQAN L EDG+F EE V R GE I+V R+++D+ Sbjct: 536 DPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVARFRGENIVVKRDRVDY 595 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EAP VGTGME V AK S Sbjct: 596 MDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGTGMEYVSAKDS 655 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 GAA++ K GIVE+V+A I +R +E D +D YRL+KF RSNQ TC NQRP+V Sbjct: 656 GAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQGTCYNQRPIV 715 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++++SER+V EDV+TSI Sbjct: 716 KKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSI 775 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 776 HIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKG 835 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR D Sbjct: 836 MTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGD 884 Score = 356 bits (914), Expect = 1e-95, Method: Composition-based stats. Identities = 146/459 (31%), Positives = 202/459 (44%), Gaps = 77/459 (16%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 690 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 748 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 749 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 808 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R +++ Sbjct: 809 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKARE-VRDTSLRVPHG 867 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 + K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 868 GGGI----------------VLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 911 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 912 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 971 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 972 IASPVFDGATEEDVWNILEEAGMARDAK----------------------------TVLY 1003 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1004 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1037 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1038 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1076 >gi|326390669|ref|ZP_08212224.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter ethanolicus JW 200] gi|325993347|gb|EGD51784.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter ethanolicus JW 200] Length = 1239 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 454/952 (47%), Positives = 612/952 (64%), Gaps = 64/952 (6%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F K E++++PDLIEVQK SY FL EGL+ F+ + PI +F+G Sbjct: 11 TRMSFAKIDEVLEMPDLIEVQKKSYKWFL----------EEGLREVFREISPIESFTGNL 60 Query: 73 MLEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 LEFV Y + PK+ V++C RD TYAVP+K+ +RL + +IKE ++ Sbjct: 61 ALEFVDYRLENNPKYSVEECKDRDTTYAVPMKVKVRLT---------NRETGEIKESEVF 111 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 MGD PLMT+ GTF+I G +R++VSQL RSPG++++ + GK L + +IP++G W Sbjct: 112 MGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYYEQQFDKF---GKKLISATVIPNRGAW 168 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ E DS DI++VRIDR RKVP+T L ALG ++ +IL + D Sbjct: 169 LEYEEDSNDIVYVRIDRTRKVPITVLLRALGYSTDIQILDLLGEEEKLKATLDKDTTKSE 228 Query: 251 AADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD-------- 301 L+ K + GE +ES K L L K + +G Sbjct: 229 EEALIEIYK------RLRPGEPPTVESAKSLLYALFFDAKRYDLAKVGRYKFNKKLALKT 282 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 + L A+ IVN TGEI +E G+ I ++ EEI + I + +L I N Sbjct: 283 RIANLKSAKKIVNPVTGEILVEEGEKISKEKAEEIQNCGINVVEVLV--EGKVVKVIGNN 340 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 +DI + P DVS+ ++ E++ L + D + +N N Sbjct: 341 T------------VDINKYPMPYDVSSLNIKEAV--NLSILKEILDNFSDEEAVINEIKN 386 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 +HI K+DIIA I ++L +G G+IDDID+LGNRR+RSVGE+L+NQ+R+GL R Sbjct: 387 RMDELVPKHITKDDIIATISYQLNLTHGIGSIDDIDHLGNRRLRSVGELLQNQFRIGLAR 446 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER +KER++ D++ + PQ+LIN +PVV+A+ EFF SSQLSQ + N L+ +TH RR+ Sbjct: 447 LERVVKERMTIQDVNEITPQNLINIRPVVAAIREFFGSSQLSQFMDQTNPLAELTHKRRV 506 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH +HYGRICP ET EG NIGL+ SLT++ARVN YGFIE P Sbjct: 507 SALGPGGLSRERAGFEVRDVHYSHYGRICPIETPEGPNIGLIGSLTTYARVNEYGFIEAP 566 Query: 602 YRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 YR+V VT+++VY++A EE+ IAQAN LDE+ F E V CR E I VP Sbjct: 567 YRRVDKTTGTVTDEIVYMTADEEDEYIIAQANEPLDENNRFINEKVVCRLKEEIIAVPPT 626 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 ++DF+D SPKQ+VS+A S+IPFLENDD+NR LMG NMQRQAVPL+K EAP +GTG+E Sbjct: 627 EVDFMDVSPKQIVSVATSMIPFLENDDANRALMGSNMQRQAVPLIKPEAPIIGTGIEYKA 686 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SG ++AK G+VE+V A ++VIR+ +G D Y L+KF+RSNQ TC+NQR Sbjct: 687 AVDSGVVVLAKNDGVVEKVAADKVVIRTKDGRRDE-------YNLLKFKRSNQGTCINQR 739 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P+V GDEV++ +I DGPSTD G+LALG+N+LV FMPW GYN+ED++LISE +V +D Sbjct: 740 PIVNEGDEVKKGQVICDGPSTDHGELALGKNVLVGFMPWEGYNYEDAILISEELVRDDSL 799 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEE++ ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV GDILVGK+T Sbjct: 800 TSIHIEEYDAEARDTKLGPEEITREIPNVGEDALKDLDERGIIRIGAEVTAGDILVGKVT 859 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 PKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG VVDV++++R D Sbjct: 860 PKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKVYSRENGD 911 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 265/1141 (23%), Positives = 432/1141 (37%), Gaps = 132/1141 (11%) Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSD---CLCGLYVAEDIVNGETG----------EIY 321 E G + +G + + + V+ G+ + G + V G +I Sbjct: 120 EKGTFIINGAERVIVSQLVRSPGVYYEQQFDKFGKKLISATVIPNRGAWLEYEEDSNDIV 179 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 D + + + + I +D + ++ TL D K ++AL++IY+ + Sbjct: 180 YVRIDRTRKVPITVLLRALGYSTDIQILDLLGEEEKLKATLDKDTTKSEEEALIEIYKRL 239 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 RPG+ T A+S+ LFFD+ +YDL+ VGR K N +L L + + K Sbjct: 240 RPGEPPTVESAKSLLYALFFDAKRYDLAKVGRYKFNKKLALK--------TRIANLKSAK 291 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 +V+ G+ +++ + + + + N + + + + MP Sbjct: 292 KIVNPVTGEILVEEGEKISKEKAEEIQNCGINVVEVLVEGKVVKVIGNNTVDINKYPMPY 351 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAG-VEMRD 560 D+ + + L + ++ I R+ L + + Sbjct: 352 DVSSLNIKEAVNLSILKEI-LDNFSDEEAVINEI--KNRMDELVPKHITKDDIIATISYQ 408 Query: 561 VHPTH-YGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSA 619 ++ TH G I + + V L + + R V + DV ++ Sbjct: 409 LNLTHGIGSIDDIDHLGNRRLRSVGELL---QNQFRIGLARLERVVKERMTIQDVNEITP 465 Query: 620 MEEENR--YIA-----QANSSLDEDGSFTEELVFCRCAGEEILV-------PREKIDFID 665 N +A +S L + T L + R + D Sbjct: 466 QNLINIRPVVAAIREFFGSSQLSQFMDQTNPLAELTHKRRVSALGPGGLSRERAGFEVRD 525 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 I P N L + + T + Sbjct: 526 VHYSHYGRICPIETPEGPNIGLIGSLTTYARVNEYGFIEAPYRRVDKT---TGTVTDEIV 582 Query: 726 AIVAKRAGIVEQVDAIRIVIRSV--EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 + A A + + + +I + + + Q V Sbjct: 583 YMTADEEDEYIIAQANEPLDENNRFINEKVVCRLKEEIIAVPPTEVDFMDVSPKQIVSVA 642 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV----SEDVF 839 + A+ ++ P G E + +V ++ V Sbjct: 643 TSMIPFLENDDANRALMGSNMQRQAVPLIKPEAPIIGTGIEYKAAVDSGVVVLAKNDGVV 702 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 + ++ + TK G + + I++ I+ G EV G ++ + Sbjct: 703 EKVAADK---VVIRTKDGRRDEYNLLKFKRSNQGTCINQRPIVNEGDEVKKGQVICDGPS 759 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 + + +L + + D L V D + + H + + + Sbjct: 760 T-DHGELALGKNVLVGFMPWEGYNYEDAILI----SEELVRDDSLTSIHIEEYDAEARDT 814 Query: 960 E---REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD--LIS 1014 + E + +D LD R+ + + + G K T L+++ L+ Sbjct: 815 KLGPEEITREIPNVGEDALKDLDERGIIRIGAEVTAGDILVGKVTPKGETELTAEERLLR 874 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + + +V + V K+ + GD++PPGV ++V Sbjct: 875 AIFGEKAREVRDTSLRVPHGESGIVV-------------DVKVYSRENGDELPPGVNQMV 921 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 +VFVA KR I GDKMAGRHGNKG++SRILP EDMPFL DGTP+ I LNPLGVPSRMN+G Sbjct: 922 RVFVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPFLPDGTPLQICLNPLGVPSRMNIG 981 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVL 1194 Q+ E HLG LG +I + + D DI L + S + D + Sbjct: 982 QVLEVHLGLVAKALGWQIATPVFDGATEEDIQELLAK--------------SGFSPDGKV 1027 Query: 1195 RVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYI 1254 ++ G++ GEPFD VTVGY+ Sbjct: 1028 QL---------------------------------YDGRT-------GEPFDNKVTVGYM 1047 Query: 1255 YMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEM 1314 YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+ Sbjct: 1048 YMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEI 1107 Query: 1315 LTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 LT+KSDDV GR + YE+IV G + E G PESF VLVKE+Q+L L + + + Sbjct: 1108 LTVKSDDVSGRVKTYEAIVKGENIPEPGIPESFKVLVKELQSLALDVKVITEDNQEIPLK 1167 Query: 1375 E 1375 E Sbjct: 1168 E 1168 >gi|170293436|gb|ACB12771.1| DNA-directed RNA polymerase [Bacillus caldotenax] Length = 1083 Score = 870 bits (2249), Expect = 0.0, Method: Composition-based stats. Identities = 445/949 (46%), Positives = 601/949 (63%), Gaps = 71/949 (7%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 + + E++++P+LIE+Q +SY FL +EGL+ FK + PI FSG LE Sbjct: 1 SYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFKEISPIEDFSGNLSLE 50 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 F+ Y PK+ V++ RD+TYA PL++ +RLI K ++KEQ ++MGD Sbjct: 51 FIDYSLGEPKYSVEEAKERDVTYAAPLRVKVRLI---------NKETGEVKEQDVFMGDF 101 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 PLMT+ GTF+I G +R++VSQL RSP +++ + +GK Y+ +IP++G W++ E Sbjct: 102 PLMTETGTFIINGAERVIVSQLVRSPSVYYS---DKVDKNGKRGYSATVIPNRGAWLEYE 158 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADL 254 D+KD+++VRIDR RK+PVT L ALG S+ EI+ + + L Sbjct: 159 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLRNTLEKDNTDSTEKAL 218 Query: 255 MVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK--------GVKFLGITSDCLCG 305 + + GE +E+ K L + K + + L Sbjct: 219 I------EIYERLRPGEPPTLENAKSLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFN 272 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 +AE I + ETGEI EAG +ID ++ + + R +P L T Sbjct: 273 QRLAETIADPETGEIIAEAGTMIDRRAEPSVALTLNRLLPYL------EKGVGLQTYRPA 326 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 + D + ++ P D G +N+ N Sbjct: 327 EGVVDGDISVQTIKIYAPNDP------------------------DGEKVINVIGNGFIA 362 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL RMER Sbjct: 363 EDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERV 422 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N L+ +TH RRLSALG Sbjct: 423 VRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALG 482 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A+VN +GFIETPYR+V Sbjct: 483 PGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKFGFIETPYRRV 542 Query: 606 --CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 G+VT+ + YL+A EE+N +AQAN L EDG+F EE V R GE I+V R+++D+ Sbjct: 543 DPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVARFRGENIVVKRDRVDY 602 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EAP VGTGME V AK S Sbjct: 603 MDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGTGMEYVSAKDS 662 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 GAA++ K GIVE+V+A I +R +E D +D YRL+KF RSNQ TC NQRP+V Sbjct: 663 GAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQGTCYNQRPIV 722 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++++SER+V EDV+TSI Sbjct: 723 KKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSI 782 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 783 HIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKG 842 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR D Sbjct: 843 MTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGD 891 Score = 357 bits (915), Expect = 1e-95, Method: Composition-based stats. Identities = 147/459 (32%), Positives = 199/459 (43%), Gaps = 77/459 (16%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 697 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 755 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 756 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 815 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R Sbjct: 816 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAR------------- 862 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 863 ----EVRDTSLRVPHGGGGIVLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 918 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 919 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 978 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 979 IASPVFDGATEEDVWNILEEAGMARDAK----------------------------TVLY 1010 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1011 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1044 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1045 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1083 >gi|229917366|ref|YP_002886012.1| DNA-directed RNA polymerase subunit beta [Exiguobacterium sp. AT1b] gi|259494183|sp|C4KZQ4|RPOB_EXISA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|229468795|gb|ACQ70567.1| DNA-directed RNA polymerase, beta subunit [Exiguobacterium sp. AT1b] Length = 1182 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 434/964 (45%), Positives = 605/964 (62%), Gaps = 77/964 (7%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ F + E++++P+LIE+Q ASY+ FL EGL+ F Sbjct: 1 MTGQLVQYGRHRQRRSFARISEVLELPNLIEIQTASYEWFLR----------EGLKEMFT 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI+ F+G +LEF+ Y PK+ +D+ RD+TY+ PL++ +RL K Sbjct: 51 DISPISDFTGNLVLEFIDYSLSEPKYSIDESKERDVTYSAPLRVKVRL---------QNK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++++ + +GK + Sbjct: 102 ETGELKEQEVFMGDFPLMTESGTFIINGAERVIVSQLVRSPSVYYNAKLDK---NGKRGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KDI++VRIDR RK+PVT L ALG ++ EI+ Sbjct: 159 GATVIPNRGAWLELETDAKDIVYVRIDRTRKIPVTVLLRALGFGTDQEIIDLLGDDEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK---- 294 + + L+ + GE +E+ K L K + Sbjct: 219 NTLEKDNTESTEKALI------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 272 Query: 295 ----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L G +AE +V+ ETGE+ EAG ++D ++L+ I + Sbjct: 273 YKMNKKLHLKNRLFGQKLAETLVDPETGEVLAEAGTILDRRNLDRI------------LP 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N + T + + L +V+ P D Sbjct: 321 HLENGLGYIDAEPTGGVAEGEPFGLQSIKVISPDDP------------------------ 356 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + V+HI DIIA I +L + GT DDID+LGNRR+RSVGE+ Sbjct: 357 DGERILNIIGNGNIDRSVKHITPADIIASINYFFNLLHEVGTTDDIDHLGNRRLRSVGEL 416 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER +KER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 417 LQNQFRIGLSRMERVVKERMSIQDQNAITPQALINIRPVIASLKEFFGSSQLSQFMDQTN 476 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 477 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 536 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN YGFIE PYR+V G VT D+ Y++A EE+ +AQAN L EDG F +E V CR Sbjct: 537 KVNEYGFIEAPYRRVDPETGLVTGDIQYMTADEEDLYVVAQANMPLTEDGHFADEQVLCR 596 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G+ + V ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ ++ Sbjct: 597 FRGQNLSVEPSRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLQPDS 656 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG-VDIYRLMKF 767 P VGTGME V AK SGAAIVAK G+VE+V A I+IR SG +D Y+L K+ Sbjct: 657 PIVGTGMEYVSAKDSGAAIVAKHPGVVERVTAREILIRRTSDVNGSEVSGDLDRYKLQKY 716 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQ+P++ GD V + +I+ADGPS D+G+LALGRN++VAFM W GYN+ED++ Sbjct: 717 VRSNQGTCYNQKPIIAAGDRVEKGEILADGPSMDMGELALGRNVVVAFMTWDGYNYEDAI 776 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E +RDTKLGPEEITRDIPNV ++ L+N+D+ GII +GAE Sbjct: 777 IMSERLVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGDDALRNLDDRGIIRIGAE 836 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP+G G ++DV++F+R Sbjct: 837 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPNGGDGIILDVKVFDR 896 Query: 948 HGID 951 D Sbjct: 897 ENGD 900 Score = 536 bits (1380), Expect = e-149, Method: Composition-based stats. Identities = 267/1172 (22%), Positives = 426/1172 (36%), Gaps = 145/1172 (12%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFLGITSDCL 303 + + + ++G +I ++ + S L++S L Sbjct: 98 LQNKETGELKEQEVFMGDFPLMTESGTFIINGAERVIVSQLVRSPSVYYNAKLDKNGKRG 157 Query: 304 CGLYVAEDI-----VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 G V + + + +I D + + + + +D + ++ Y+ Sbjct: 158 FGATVIPNRGAWLELETDAKDIVYVRIDRTRKIPVTVLLRALGFGTDQEIIDLLGDDEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D + + AL++IY +RPG+ T A+S+ FFD +YDL+ VGR KMN Sbjct: 218 RNTLEKDNTESTEKALIEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKMNK 277 Query: 419 RLNLD-------------TPDDVRHI----RKEDIIAIIKILVDLRNGKGTIDDIDNLGN 461 +L+L P+ + D + +IL L NG G ID G Sbjct: 278 KLHLKNRLFGQKLAETLVDPETGEVLAEAGTILDRRNLDRILPHLENGLGYIDAEPTGGV 337 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 G ER + + SV + ++ Sbjct: 338 AEGEPFGLQSIKVISPDDPDGERILNIIGNGNIDRSVKHITPADIIASINYFFNLLHEVG 397 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 + +H+ + + L + G++R V+ R A + I Sbjct: 398 TTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMSIQDQNAITPQALINIRPVIA 457 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 + ++++ + TN + L+ Sbjct: 458 SLKEFFGSSQLSQF------------MDQTNPLAELT------------------HKRRL 487 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQA 700 L E + + + I + + S + Sbjct: 488 SALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNEYGFIEAP 547 Query: 701 VPLLKAEAPFVGTGMESVVA--KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG 758 + E V ++ + A + A + A V+ G Sbjct: 548 YRRVDPETGLVTGDIQYMTADEEDLYVVAQANMPLTEDGHFADEQVLCRFRGQNLSVEPS 607 Query: 759 VDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPW 818 Y + ++ + ++ +L P Sbjct: 608 RVDYMDVSPKQVVSAATAC---------IPFLENDDSNRALMGANMQRQAVPLLQPDSPI 658 Query: 819 HGYNFE---------DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVS 869 G E + +V I I + G + + V Sbjct: 659 VGTGMEYVSAKDSGAAIVAKHPGVVERVTAREILIRRTSDVNGSEVSGDLDRYKLQKYVR 718 Query: 870 EEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSL 929 ++ II G V G+IL + + ++ A + D + Sbjct: 719 SNQGTCYNQKPIIAAGDRVEKGEILADGPS-MDMGELALGRNVVVAFMTWDGYNYEDAII 777 Query: 930 RVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEI 989 V V I ++ + E + DD LD R+ Sbjct: 778 MSERLVKDDV-YTSIHIEEYESESRDTKLGPEEITRDIPNVGDDALRNLDDRGIIRIGAE 836 Query: 990 LCGQNAVSGPKGFKKSTVLSSD--LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKS 1047 + + + G K T L+++ L+ + + +V + + Sbjct: 837 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPNGGDGI--------- 887 Query: 1048 ILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCE 1107 K+ + GD++ PGV ++V+V++ KR I GDKMAGRHGNKG++SRILP E Sbjct: 888 ----ILDVKVFDRENGDELSPGVNQMVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEE 943 Query: 1108 DMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISP 1167 DMP++ DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG K+ + + D D+ Sbjct: 944 DMPYMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAAKKLGIKVATPVFDGAREEDVW- 1002 Query: 1168 LRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMAD 1227 A E A Sbjct: 1003 ----------------------------------------------ATIEE-------AG 1009 Query: 1228 LDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 +D+ ++ LYDG TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1010 MDKDAKTRLYDGRTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKA 1069 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQE+LTIKSDD VGR + YE+IV G + G PESF Sbjct: 1070 QFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDDTVGRVKAYEAIVKGESVPKAGVPESF 1129 Query: 1348 NVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 VL+KE+QALG+ + + ++ + +E D Sbjct: 1130 RVLIKELQALGMEVKMMSADDEEVEMKDEDDD 1161 >gi|170293424|gb|ACB12765.1| DNA-directed RNA polymerase [Bacillus caldolyticus] Length = 1076 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 439/949 (46%), Positives = 600/949 (63%), Gaps = 78/949 (8%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 + + E++++P+LIE+Q +SY FL +EGL+ F+ + PI FSG LE Sbjct: 1 SYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFREISPIEDFSGNLSLE 50 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 F+ Y PK+ V++ RD+TYA PL++ +RLI K ++KEQ ++MGD Sbjct: 51 FIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLI---------NKETGEVKEQDVFMGDF 101 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 PLMT+ GTF+I G +R++VSQL RSP +++ + +GK Y+ +IP++G W++ E Sbjct: 102 PLMTETGTFIINGAERVIVSQLVRSPSVYYS---DKVDKNGKRGYSATVIPNRGAWLEYE 158 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADL 254 D+KD+++VRIDR RK+PVT L ALG ++ EI+ + + L Sbjct: 159 TDAKDVVYVRIDRTRKLPVTVLLRALGFSTDQEIIDLLGDNEYLRNTLEKDNTDSTEKAL 218 Query: 255 MVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK--------GVKFLGITSDCLCG 305 + + GE +E+ K L + K + + L Sbjct: 219 I------EIYERLRPGEPPTLENAKNLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFN 272 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 +AE I++ ET E+ EAG +ID ++L + + + + T Sbjct: 273 QRLAETIIDPETKEVIAEAGAMIDRRTLNRLLPYLEKGVGL-------------QTYRPA 319 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 + D + ++ P D G +N+ N Sbjct: 320 EGVVDGDISVQTIKIYAPNDP------------------------DGEKVINVIGNGFIA 355 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL RMER Sbjct: 356 EDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERV 415 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N L+ +TH RRLSALG Sbjct: 416 VRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALG 475 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A+VN +GFIETPYR+V Sbjct: 476 PGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKFGFIETPYRRV 535 Query: 606 --CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 G+VT+ + YL+A EE+N +AQAN L EDG+F EE V R GE I+V R+++D+ Sbjct: 536 DPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVARFRGENIVVKRDRVDY 595 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EAP VGTGME V AK S Sbjct: 596 MDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGTGMEYVSAKDS 655 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 GAA++ K GIVE+V+A I +R +E D +D YRL+KF RSNQ TC NQRP+V Sbjct: 656 GAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQGTCYNQRPIV 715 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++++SER+V EDV+TSI Sbjct: 716 KKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSI 775 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 776 HIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKG 835 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR D Sbjct: 836 MTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGD 884 Score = 355 bits (912), Expect = 2e-95, Method: Composition-based stats. Identities = 147/459 (32%), Positives = 199/459 (43%), Gaps = 77/459 (16%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 690 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 748 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 749 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 808 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R Sbjct: 809 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAR------------- 855 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 856 ----EVRDTSLRVPHGGGGIVLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 911 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 912 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 971 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 972 IASPVFDGATEEDVWNILEEAGLARDAK----------------------------TVLY 1003 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1004 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1037 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1038 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1076 >gi|402363|gb|AAB00972.1| RNA polymerase beta-subunit [Bacillus subtilis subsp. subtilis str. 168] Length = 1193 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 433/964 (44%), Positives = 603/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++ RD+TY+ PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD P+MT GTF+I G +R++VSQL RSP ++F G+ +GK + Sbjct: 102 ETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EIL Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D S L+ + GE +E+ K L K Sbjct: 219 NTLDKDNTENSDKALL------EIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI E G ++D ++L++ V Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDK-------------VL 319 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N L + + L ++ P D Sbjct: 320 PYLENGIGFRKLYPNGGVVEDEVTLQSIKIFAPTD------------------------Q 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N +++++I DII+ I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGEQVINVIGNAYIEEEIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 476 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V GKVT + YL+A EE+N +AQAN+ LD++G+F ++ + R Sbjct: 536 KVNRFGFIETPYRRVDPETGKVTGRIDYLTADEEDNYVVAQANARLDDEGAFIDDSIVAR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE +V R ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ EA Sbjct: 596 FRGENTVVSRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEA 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V K SGAA++ K GIVE+V+A + +R E D +D Y L+KF Sbjct: 656 PFVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDGQKVKGNLDKYSLLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGDEV + +I+ADGPS +LG+LALGRN++V FM W GYN+ED++ Sbjct: 716 VRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+D+ GII +GAE Sbjct: 776 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G + DV++FNR Sbjct: 836 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 259/1174 (22%), Positives = 440/1174 (37%), Gaps = 125/1174 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 95 KVRLINKETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + +D + Sbjct: 155 KKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-LDLIGE 213 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+RNTL D ++ ALL+IY +RPG+ T A+S+ + FFD +YDL+ VGR Sbjct: 214 NEYLRNTLDKDNTENSDKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRY 273 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + +IL K + +G R++ Sbjct: 274 KINKKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDKVLPYLENGIGFRKLYP 333 Query: 467 VGEMLKNQYRLGLLRM--------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 G +++++ L +++ E+ I ++ + + + +S Sbjct: 334 NGGVVEDEVTLQSIKIFAPTDQEGEQVINVIGNAYIEEEIKNITPADIISSISYFFNLLH 393 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 + +H+ + + L + G++R V R + Sbjct: 394 GVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRP 453 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 I + ++++ + TN + L+ Sbjct: 454 VIASIKEFFGSSQLSQF------------MDQTNPLAELT------------------HK 483 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQ 697 L E + + + + I + + S + Sbjct: 484 RRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGFI 543 Query: 698 RQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTS 757 + E V ++ + A +VA+ + D I + Sbjct: 544 ETPYRRVDPETGKVTGRIDYLTADEEDNYVVAQANARL---DDEGAFIDDSIVARFRGEN 600 Query: 758 GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMP 817 V + + + V+ E ++ G + + L + Sbjct: 601 TVVSRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEAPFVGT 660 Query: 818 WHGY---NFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 Y + +I + +V ++ + +E + G + + V Sbjct: 661 GMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDGQKVKGNLDKYSLLKFVRSNQ 720 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 ++ I+ VG EV G+IL + + ++ + D + Sbjct: 721 GTCYNQRPIVSVGDEVVKGEILADGPS-MELGELALGRNVMVGFMTWDGYNYEDAII--- 776 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 777 --MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDR-GIIRIG 833 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 G K T ++ R F + +V+ + + Sbjct: 834 AEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDV--- 890 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 K+ + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++S+ILP EDMP+L Sbjct: 891 ---KVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYL 947 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 DGTP+DI+LNPLGVPSRMN+GQ+ E H+G A LG I S + D D+ Sbjct: 948 PDGTPIDIMLNPLGVPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDVWETLEEA 1007 Query: 1173 EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG 1232 T ++DG Sbjct: 1008 GMSRDAK----------------------------TVLYDG------------------- 1020 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GG Sbjct: 1021 -------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGH 1073 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G++ E G PESF VL+K Sbjct: 1074 GFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIK 1133 Query: 1353 EMQALGLSIDLENSRTKNSAK--MEEIPDFNKCE 1384 E+Q+LG+ + + + + +E+ D + + Sbjct: 1134 ELQSLGMDVKILSGDEEEIEMRDLEDEEDAKQAD 1167 >gi|170293430|gb|ACB12768.1| DNA-directed RNA polymerase [Geobacillus lituanicus] Length = 1076 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 440/949 (46%), Positives = 600/949 (63%), Gaps = 78/949 (8%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 + + E++++P+LIE+Q +SY FL +EGL+ F+ + PI FSG LE Sbjct: 1 SYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFREISPIEDFSGNLSLE 50 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 F+ Y PK+ V++ RD+TYA PL++ +RLI K ++KEQ ++MGD Sbjct: 51 FIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLI---------NKETGEVKEQDVFMGDF 101 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 PLMT+ GTF+I G +R++VSQL RSP +++ + +GK Y+ +IP++G W++ E Sbjct: 102 PLMTETGTFIINGAERVIVSQLVRSPSVYYS---DKVDKNGKRGYSATVIPNRGAWLEYE 158 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADL 254 D+KD+++VRIDR RK+PVT L ALG S+ EI+ + + L Sbjct: 159 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLRNTLEKDNTDSTEKAL 218 Query: 255 MVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK--------GVKFLGITSDCLCG 305 + + GE +E+ K L + K + + L Sbjct: 219 I------EIYERLRPGEPPTLENAKNLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFN 272 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 +AE I++ ET E+ EAG +ID ++L + + + + T Sbjct: 273 QRLAETIIDPETKEVIAEAGAMIDRRTLNRLLPYLEKGVGL-------------QTYRPA 319 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 + D + ++ P D G +N+ N Sbjct: 320 EGVVDGDISVQTIKIYAPNDP------------------------DGEKVINVIGNGFIA 355 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL RMER Sbjct: 356 EDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERV 415 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N L+ +TH RRLSALG Sbjct: 416 VRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALG 475 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A+VN +GFIETPYR+V Sbjct: 476 PGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKFGFIETPYRRV 535 Query: 606 --CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 G+VT+ + YL+A EE+N +AQAN L EDG+F EE V R GE I+V R+++D+ Sbjct: 536 DPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVARFRGENIVVKRDRVDY 595 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EAP VGTGME V AK S Sbjct: 596 MDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGTGMEYVSAKDS 655 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 GAA++ K GIVE+V+A I +R +E D +D YRL+KF RSNQ TC NQRP+V Sbjct: 656 GAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQGTCYNQRPIV 715 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++++SER+V EDV+TSI Sbjct: 716 KKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSI 775 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 776 HIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKG 835 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR D Sbjct: 836 MTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGD 884 Score = 355 bits (912), Expect = 2e-95, Method: Composition-based stats. Identities = 147/459 (32%), Positives = 199/459 (43%), Gaps = 77/459 (16%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 690 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 748 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 749 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 808 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R Sbjct: 809 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAR------------- 855 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 856 ----EVRDTSLRVPHGGGGIVLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 911 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 912 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 971 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 972 IASPVFDGATEEDVWNILEEAGLARDAK----------------------------TVLY 1003 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1004 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1037 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1038 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1076 >gi|319654860|ref|ZP_08008935.1| DNA-directed RNA polymerase subunit beta [Bacillus sp. 2_A_57_CT2] gi|317393423|gb|EFV74186.1| DNA-directed RNA polymerase subunit beta [Bacillus sp. 2_A_57_CT2] Length = 1187 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 435/964 (45%), Positives = 604/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFH 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++ RD+TY+ PL++ +RL+ K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVEESKERDVTYSAPLRVKVRLV---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD PLMT+ GTFVI G +R++VSQL RSP ++F G+ +GK + Sbjct: 105 ETGEVKDQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYFS---GKLDKNGKKGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNEYIR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTESTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L G +AE +V+ ETGEI E G +D ++L+ I + +DI Sbjct: 276 YKINKKLHIKNRLFGQKLAETLVDPETGEIIAEKGVTLDRRTLDRILPNLEKDIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 T+ + LL ++ P + Sbjct: 331 --------FKTVSLLGGVVDDEVLLQSIKIYAPNE------------------------- 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + V++I DIIA I +L + G DDID+LGNRR+RSVGE+ Sbjct: 358 DGEKVINVIGNAYVEEAVKNISPSDIIASISYFFNLLHSVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR++ GKVT+ + YL+A EE+N +AQAN+ L +DGSF +E V R Sbjct: 538 KVNRFGFIETPYRRIDPETGKVTSRIDYLTADEEDNYVVAQANALLGDDGSFLDEEVVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE +V R+++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ EA Sbjct: 598 FKGENTVVKRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEA 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG-DLDPSTSGVDIYRLMKF 767 P VGTGME V K SGAA++ K GIVE V+A + +R ++ D +D YR++KF Sbjct: 658 PRVGTGMEYVSGKDSGAAVICKHEGIVEHVEAREVWVRRIQNVDGQEVKGDLDKYRMLKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+ V + +I+ADGPS +LG+LALGRN+LVAFM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVAVGNRVTKGEILADGPSMELGELALGRNVLVAFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E +RDTKLGPEEITRDIPNV E+ L+N+DE GII GAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRTGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 181/533 (33%), Positives = 256/533 (48%), Gaps = 78/533 (14%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + + ++ I+ VG V G+IL + + +L A Sbjct: 707 GDLDKYRMLKFIRSNQGTCYNQRPIVAVGNRVTKGEILADGPS-MELGELALGRNVLVAF 765 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 766 MTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGEDALRN 825 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R +++ Sbjct: 826 LDERGIIRTGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKARE-VRDTSLRVPHG 884 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 + K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 885 GGGI----------------VLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 928 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMP+L DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG Sbjct: 929 GRHGNKGVISRILPEEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIH 988 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 + S + D D+ Sbjct: 989 VASPVFDGAREEDVW--------------------------------------------- 1003 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 A E A + +++LYDG +GEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1004 --ATIEE-------AGMARDAKTVLYDGRSGEPFDNRVSVGVMYMIKLAHMVDDKLHARS 1054 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YES Sbjct: 1055 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYES 1114 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 IV G + E G PESF VL+KE+Q+LG+ + + + + M ++ D + + Sbjct: 1115 IVKGENVPEPGVPESFKVLIKELQSLGMDVKILSGDEEEIE-MRDLEDEDDVQ 1166 >gi|307267200|ref|ZP_07548706.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306917779|gb|EFN48047.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 1239 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 454/952 (47%), Positives = 612/952 (64%), Gaps = 64/952 (6%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F K E++++PDLIEVQK SY FL EGL+ F+ + PI +F+G Sbjct: 11 TRMSFAKIDEVLEMPDLIEVQKKSYKWFL----------EEGLREVFREISPIESFTGNL 60 Query: 73 MLEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 LEFV Y + PK+ V++C RD TYAVP+K+ +RL + +IKE ++ Sbjct: 61 ALEFVDYRLENNPKYSVEECKDRDTTYAVPMKVKVRLT---------NRETGEIKESEVF 111 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 MGD PLMT+ GTF+I G +R++VSQL RSPG++++ + GK L + +IP++G W Sbjct: 112 MGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYYEQQFDKF---GKKLISATVIPNRGAW 168 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ E DS DI++VRIDR RKVP+T L ALG ++ +IL + D Sbjct: 169 LEYEEDSNDIVYVRIDRTRKVPITVLLRALGYSTDIQILDLLGEEEKLKATLDKDTTKSE 228 Query: 251 AADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD-------- 301 L+ K + GE +ES K L L K + +G Sbjct: 229 EEALIEIYK------RLRPGEPPTVESAKSLLYALFFDAKRYDLAKVGRYKFNKKLALKM 282 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 + L A+ IVN TGEI +E G+ I ++ EEI + I + +L I N Sbjct: 283 RIANLKSAKKIVNPVTGEILVEEGEKISKEKAEEIQNCGINVVEVLV--EGKVVKVIGNN 340 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 +DI + P DVS+ ++ E++ L + D + +N N Sbjct: 341 T------------VDINKYPMPYDVSSLNIKEAV--NLSILKEILDNFSDEEAVINEIKN 386 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 +HI K+DIIA I ++L +G G+IDDID+LGNRR+RSVGE+L+NQ+R+GL R Sbjct: 387 RMDELVPKHITKDDIIATISYQLNLTHGIGSIDDIDHLGNRRLRSVGELLQNQFRIGLAR 446 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER +KER++ D++ + PQ+LIN +PVV+A+ EFF SSQLSQ + N L+ +TH RR+ Sbjct: 447 LERVVKERMTIQDVNEITPQNLINIRPVVAAIREFFGSSQLSQFMDQTNPLAELTHKRRV 506 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH +HYGRICP ET EG NIGL+ SLT++ARVN YGFIE P Sbjct: 507 SALGPGGLSRERAGFEVRDVHYSHYGRICPIETPEGPNIGLIGSLTTYARVNEYGFIEAP 566 Query: 602 YRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 YR+V VT+++VY++A EE+ IAQAN LDE+ F E V CR E I VP Sbjct: 567 YRRVDKTTGTVTDEIVYMTADEEDEYIIAQANEPLDENNRFINEKVVCRLKEEIIAVPPT 626 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 ++DF+D SPKQ+VS+A S+IPFLENDD+NR LMG NMQRQAVPL+K EAP +GTG+E Sbjct: 627 EVDFMDVSPKQIVSVATSMIPFLENDDANRALMGSNMQRQAVPLIKPEAPIIGTGIEYKA 686 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SG ++AK G+VE+V A ++VIR+ +G D Y L+KF+RSNQ TC+NQR Sbjct: 687 AVDSGVVVLAKNDGVVEKVAADKVVIRTKDGRRDE-------YNLLKFKRSNQGTCINQR 739 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P+V GDEV++ +I DGPSTD G+LALG+N+LV FMPW GYN+ED++LISE +V +D Sbjct: 740 PIVNEGDEVKKGQVICDGPSTDHGELALGKNVLVGFMPWEGYNYEDAILISEELVRDDSL 799 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEE++ ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV GDILVGK+T Sbjct: 800 TSIHIEEYDAEARDTKLGPEEITREIPNVGEDALKDLDERGIIRIGAEVTAGDILVGKVT 859 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 PKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG VVDV++++R D Sbjct: 860 PKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKVYSRENGD 911 Score = 526 bits (1354), Expect = e-146, Method: Composition-based stats. Identities = 263/1141 (23%), Positives = 426/1141 (37%), Gaps = 132/1141 (11%) Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSD---CLCGLYVAEDIVNGETG----------EIY 321 E G + +G + + + V+ G+ + G + V G +I Sbjct: 120 EKGTFIINGAERVIVSQLVRSPGVYYEQQFDKFGKKLISATVIPNRGAWLEYEEDSNDIV 179 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 D + + + + I +D + ++ TL D K ++AL++IY+ + Sbjct: 180 YVRIDRTRKVPITVLLRALGYSTDIQILDLLGEEEKLKATLDKDTTKSEEEALIEIYKRL 239 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 RPG+ T A+S+ LFFD+ +YDL+ VGR K N +L L + + K Sbjct: 240 RPGEPPTVESAKSLLYALFFDAKRYDLAKVGRYKFNKKLALK--------MRIANLKSAK 291 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 +V+ G+ +++ + + + + N + + + + MP Sbjct: 292 KIVNPVTGEILVEEGEKISKEKAEEIQNCGINVVEVLVEGKVVKVIGNNTVDINKYPMPY 351 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAG-VEMRD 560 D+ + + L + ++ I R+ L + + Sbjct: 352 DVSSLNIKEAVNLSILKEI-LDNFSDEEAVINEI--KNRMDELVPKHITKDDIIATISYQ 408 Query: 561 VHPTH-YGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSA 619 ++ TH G I + + V L + + R V + DV ++ Sbjct: 409 LNLTHGIGSIDDIDHLGNRRLRSVGELL---QNQFRIGLARLERVVKERMTIQDVNEITP 465 Query: 620 MEEENR--YIA-----QANSSLDEDGSFTEELVFCRCAGEEILV-------PREKIDFID 665 N +A +S L + T L + R + D Sbjct: 466 QNLINIRPVVAAIREFFGSSQLSQFMDQTNPLAELTHKRRVSALGPGGLSRERAGFEVRD 525 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 I P N L + + T + Sbjct: 526 VHYSHYGRICPIETPEGPNIGLIGSLTTYARVNEYGFIEAPYRRVDKT---TGTVTDEIV 582 Query: 726 AIVAKRAGIVEQVDAIRIVIRSV--EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 + A A + + + +I + + + Q V Sbjct: 583 YMTADEEDEYIIAQANEPLDENNRFINEKVVCRLKEEIIAVPPTEVDFMDVSPKQIVSVA 642 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV----SEDVF 839 + A+ ++ P G E + +V ++ V Sbjct: 643 TSMIPFLENDDANRALMGSNMQRQAVPLIKPEAPIIGTGIEYKAAVDSGVVVLAKNDGVV 702 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 + ++ + TK G + + I++ I+ G EV G ++ + Sbjct: 703 EKVAADK---VVIRTKDGRRDEYNLLKFKRSNQGTCINQRPIVNEGDEVKKGQVICDGPS 759 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 + + +L + + D L V D + + H + + + Sbjct: 760 T-DHGELALGKNVLVGFMPWEGYNYEDAILI----SEELVRDDSLTSIHIEEYDAEARDT 814 Query: 960 E---REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD--LIS 1014 + E + +D LD R+ + + + G K T L+++ L+ Sbjct: 815 KLGPEEITREIPNVGEDALKDLDERGIIRIGAEVTAGDILVGKVTPKGETELTAEERLLR 874 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + + +V + V K+ + GD++PPGV ++V Sbjct: 875 AIFGEKAREVRDTSLRVPHGESGIVV-------------DVKVYSRENGDELPPGVNQMV 921 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 +VFVA KR I GDKMAGRHGNKG++SRILP EDMPFL DGTP+ I LNPLGVPSRMN+G Sbjct: 922 RVFVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPFLPDGTPLQICLNPLGVPSRMNIG 981 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVL 1194 Q+ E HLG LG +I + + D DI L + Sbjct: 982 QVLEVHLGLVAKALGWQIATPVFDGATEEDIQELLAKSGFSPDGKVQL------------ 1029 Query: 1195 RVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYI 1254 G++ GEPFD VTVGY+ Sbjct: 1030 -----------------------------------YDGRT-------GEPFDNKVTVGYM 1047 Query: 1255 YMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEM 1314 YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+ Sbjct: 1048 YMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEI 1107 Query: 1315 LTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 LT+KSDDV GR + YE+IV G + E G PESF VLVKE+Q+L L + + + Sbjct: 1108 LTVKSDDVSGRVKTYEAIVKGENIPEPGIPESFKVLVKELQSLALDVKVITEDNQEIPLK 1167 Query: 1375 E 1375 E Sbjct: 1168 E 1168 >gi|221307919|ref|ZP_03589766.1| DNA-directed RNA polymerase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221312240|ref|ZP_03594045.1| DNA-directed RNA polymerase subunit beta [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317174|ref|ZP_03598468.1| DNA-directed RNA polymerase subunit beta [Bacillus subtilis subsp. subtilis str. JH642] gi|221321437|ref|ZP_03602731.1| DNA-directed RNA polymerase subunit beta [Bacillus subtilis subsp. subtilis str. SMY] gi|255767022|ref|NP_387988.2| DNA-directed RNA polymerase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|321313778|ref|YP_004206065.1| DNA-directed RNA polymerase subunit beta [Bacillus subtilis BSn5] gi|239938700|sp|P37870|RPOB_BACSU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|225184649|emb|CAB11883.2| RNA polymerase (beta subunit) [Bacillus subtilis subsp. subtilis str. 168] gi|320020052|gb|ADV95038.1| DNA-directed RNA polymerase subunit beta [Bacillus subtilis BSn5] Length = 1193 Score = 869 bits (2246), Expect = 0.0, Method: Composition-based stats. Identities = 433/964 (44%), Positives = 603/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++ RD+TY+ PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD P+MT GTF+I G +R++VSQL RSP ++F G+ +GK + Sbjct: 102 ETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EIL Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D S L+ + GE +E+ K L K Sbjct: 219 NTLDKDNTENSDKALL------EIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI E G ++D ++L++ V Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDK-------------VL 319 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N L + + L ++ P D Sbjct: 320 PYLENGIGFRKLYPNGGVVEDEVTLQSIKIFAPTD------------------------Q 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N +++++I DII+ I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGEQVINVIGNAYIEEEIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 476 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V GKVT + YL+A EE+N +AQAN+ LD++G+F ++ + R Sbjct: 536 KVNRFGFIETPYRRVDPETGKVTGRIDYLTADEEDNYVVAQANARLDDEGAFIDDSIVAR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE +V R ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ EA Sbjct: 596 FRGENTVVSRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEA 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V K SGAA++ K GIVE+V+A + +R E D +D Y L+KF Sbjct: 656 PFVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDGQKVKGNLDKYSLLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGDEV + +I+ADGPS +LG+LALGRN++V FM W GYN+ED++ Sbjct: 716 VRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+D+ GII +GAE Sbjct: 776 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G + DV++FNR Sbjct: 836 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 261/1174 (22%), Positives = 442/1174 (37%), Gaps = 125/1174 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 95 KVRLINKETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + +D + Sbjct: 155 KKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-LDLIGE 213 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+RNTL D ++ ALL+IY +RPG+ T A+S+ + FFD +YDL+ VGR Sbjct: 214 NEYLRNTLDKDNTENSDKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRY 273 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + +IL K + +G R++ Sbjct: 274 KINKKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDKVLPYLENGIGFRKLYP 333 Query: 467 VGEMLKNQYRLGLLRM--------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 G +++++ L +++ E+ I ++ + + + +S Sbjct: 334 NGGVVEDEVTLQSIKIFAPTDQEGEQVINVIGNAYIEEEIKNITPADIISSISYFFNLLH 393 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 + +H+ + + L + G++R V R + Sbjct: 394 GVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRP 453 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 I + ++++ + TN + L+ Sbjct: 454 VIASIKEFFGSSQLSQF------------MDQTNPLAELT------------------HK 483 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQ 697 L E + + + + I + + S + Sbjct: 484 RRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGFI 543 Query: 698 RQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTS 757 + E V ++ + A +VA+ + D I + Sbjct: 544 ETPYRRVDPETGKVTGRIDYLTADEEDNYVVAQANARL---DDEGAFIDDSIVARFRGEN 600 Query: 758 GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMP 817 V + + + V+ E ++ G + + L + Sbjct: 601 TVVSRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEAPFVGT 660 Query: 818 WHGY---NFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 Y + +I + +V ++ + +E + G + + V Sbjct: 661 GMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDGQKVKGNLDKYSLLKFVRSNQ 720 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 ++ I+ VG EV G+IL + + ++ + D + Sbjct: 721 GTCYNQRPIVSVGDEVVKGEILADGPS-MELGELALGRNVMVGFMTWDGYNYEDAII--- 776 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 777 --MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDR-GIIRIG 833 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 G K T ++ R F + +V+ + + Sbjct: 834 AEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDV--- 890 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 K+ + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++S+ILP EDMP+L Sbjct: 891 ---KVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYL 947 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 DGTP+DI+LNPLGVPSRMN+GQ+ E H+G A LG I S + D D+ Sbjct: 948 PDGTPIDIMLNPLGVPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDVWETLEEA 1007 Query: 1173 EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG 1232 T ++DG Sbjct: 1008 GMSRDAK----------------------------TVLYDG------------------- 1020 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQ Sbjct: 1021 -------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQ 1073 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G++ E G PESF VL+K Sbjct: 1074 RFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIK 1133 Query: 1353 EMQALGLSIDLENSRTKNSAK--MEEIPDFNKCE 1384 E+Q+LG+ + + + + +E+ D + + Sbjct: 1134 ELQSLGMDVKILSGDEEEIEMRDLEDEEDAKQAD 1167 >gi|170293428|gb|ACB12767.1| DNA-directed RNA polymerase [Geobacillus thermoleovorans] Length = 1075 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 441/949 (46%), Positives = 600/949 (63%), Gaps = 78/949 (8%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 + + E++++P+LIE+Q +SY FL +EGL+ FK + PI FSG LE Sbjct: 1 SYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFKEISPIEDFSGNLSLE 50 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 F+ Y PK+ V++ RD+TYA PL++ +RLI K ++KEQ ++MGD Sbjct: 51 FIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLI---------NKETGEVKEQDVFMGDF 101 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 PLMT+ GTF+I G +R++VSQL RSP +++ + +GK Y+ +IP++G W++ E Sbjct: 102 PLMTETGTFIINGAERVIVSQLVRSPSVYYS---DKVDKNGKRGYSATVIPNRGAWLEYE 158 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADL 254 D+KD+++VRIDR RK+PVT L ALG S+ EI+ + + L Sbjct: 159 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLRNTLEKDNTDSTEKAL 218 Query: 255 MVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK--------GVKFLGITSDCLCG 305 + + GE +E+ K L + K + + L Sbjct: 219 I------EIYERLRPGEPPTLENAKNLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFN 272 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 +AE I++ ET E+ EAG +ID ++L + + + + T Sbjct: 273 QRLAETIIDPETKEVIAEAGAMIDRRTLNRLLPYLEKGVGL-------------QTYRPA 319 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 + D + ++ P D G +N+ N Sbjct: 320 EGVVDGDISVQTIKIYAPNDP------------------------DGEKVINVIGNGFIA 355 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL RMER Sbjct: 356 EDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERV 415 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N L+ +TH RRLSALG Sbjct: 416 VRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALG 475 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A+VN +GFIETPYR+V Sbjct: 476 PGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKFGFIETPYRRV 535 Query: 606 --CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 G+VT+ + YL+A EE+N +AQAN L EDG+F EE V R GE I+V R+++D+ Sbjct: 536 DPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVARFRGENIVVKRDRVDY 595 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EAP VGTGME V AK S Sbjct: 596 MDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGTGMEYVSAKDS 655 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 GAA++ K GIVE+V+A I +R +E D +D YRL+KF RSNQ TC NQRP+V Sbjct: 656 GAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQGTCYNQRPIV 715 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++++SER+V EDV+TSI Sbjct: 716 KKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSI 775 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 776 HIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKG 835 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR D Sbjct: 836 MTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGD 884 Score = 353 bits (907), Expect = 1e-94, Method: Composition-based stats. Identities = 147/458 (32%), Positives = 199/458 (43%), Gaps = 77/458 (16%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 690 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 748 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 749 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 808 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R Sbjct: 809 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAR------------- 855 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 856 ----EVRDTSLRVPHGGGGIVLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 911 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 912 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 971 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 972 IASPVFDGATEEDVWNILEEAGMARDAK----------------------------TVLY 1003 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1004 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1037 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1038 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1075 >gi|296333104|ref|ZP_06875558.1| DNA-directed RNA polymerase subunit beta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672806|ref|YP_003864477.1| DNA-directed RNA polymerase subunit beta [Bacillus subtilis subsp. spizizenii str. W23] gi|296149720|gb|EFG90615.1| DNA-directed RNA polymerase subunit beta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411049|gb|ADM36167.1| DNA-directed RNA polymerase subunit beta [Bacillus subtilis subsp. spizizenii str. W23] Length = 1193 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 433/964 (44%), Positives = 603/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++ RD+TY+ PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD P+MT GTF+I G +R++VSQL RSP ++F G+ +GK + Sbjct: 102 ETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EIL Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLVGENEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D S L+ + GE +E+ K L K Sbjct: 219 NTLDKDNTENSDKALL------EIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI E G ++D ++L++ V Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDK-------------VL 319 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N L + + L ++ P D Sbjct: 320 PYLENGIGFRKLYPNGGVVEDEVTLQSIKIFAPTD------------------------Q 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N +++++I DII+ I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGEQVINVIGNAYIEEEIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 476 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V GKVT + YL+A EE+N +AQAN+ LD++G+F ++ + R Sbjct: 536 KVNRFGFIETPYRRVDPETGKVTGRIDYLTADEEDNYVVAQANARLDDEGAFIDDSIVAR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE +V R ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ EA Sbjct: 596 FRGENTVVSRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEA 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V K SGAA++ K GIVE+V+A + +R E D +D Y L+KF Sbjct: 656 PFVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDGQKVKGNLDKYSLLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGDEV + +I+ADGPS +LG+LALGRN++V FM W GYN+ED++ Sbjct: 716 VRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+D+ GII +GAE Sbjct: 776 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G + DV++FNR Sbjct: 836 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 262/1174 (22%), Positives = 442/1174 (37%), Gaps = 125/1174 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 95 KVRLINKETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + +D V Sbjct: 155 KKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-LDLVGE 213 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+RNTL D ++ ALL+IY +RPG+ T A+S+ + FFD +YDL+ VGR Sbjct: 214 NEYLRNTLDKDNTENSDKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRY 273 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + +IL K + +G R++ Sbjct: 274 KINKKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDKVLPYLENGIGFRKLYP 333 Query: 467 VGEMLKNQYRLGLLRM--------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFC 518 G +++++ L +++ E+ I ++ + + + +S Sbjct: 334 NGGVVEDEVTLQSIKIFAPTDQEGEQVINVIGNAYIEEEIKNITPADIISSISYFFNLLH 393 Query: 519 SSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGH 578 + +H+ + + L + G++R V R + Sbjct: 394 GVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRP 453 Query: 579 NIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDG 638 I + ++++ + TN + L+ Sbjct: 454 VIASIKEFFGSSQLSQF------------MDQTNPLAELT------------------HK 483 Query: 639 SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQ 697 L E + + + + I + + S + Sbjct: 484 RRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGFI 543 Query: 698 RQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTS 757 + E V ++ + A +VA+ + D I + Sbjct: 544 ETPYRRVDPETGKVTGRIDYLTADEEDNYVVAQANARL---DDEGAFIDDSIVARFRGEN 600 Query: 758 GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMP 817 V + + + V+ E ++ G + + L + Sbjct: 601 TVVSRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEAPFVGT 660 Query: 818 WHGY---NFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 Y + +I + +V ++ + +E + G + + V Sbjct: 661 GMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDGQKVKGNLDKYSLLKFVRSNQ 720 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 ++ I+ VG EV G+IL + + ++ + D + Sbjct: 721 GTCYNQRPIVSVGDEVVKGEILADGPS-MELGELALGRNVMVGFMTWDGYNYEDAII--- 776 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 777 --MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDR-GIIRIG 833 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 G K T ++ R F + +V+ + + Sbjct: 834 AEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDV--- 890 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 K+ + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++S+ILP EDMP+L Sbjct: 891 ---KVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYL 947 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 DGTP+DI+LNPLGVPSRMN+GQ+ E H+G A LG I S + D D+ Sbjct: 948 PDGTPIDIMLNPLGVPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDVWETLEEA 1007 Query: 1173 EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG 1232 T ++DG Sbjct: 1008 GMSRDAK----------------------------TVLYDG------------------- 1020 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQ Sbjct: 1021 -------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQ 1073 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G++ E G PESF VL+K Sbjct: 1074 RFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIK 1133 Query: 1353 EMQALGLSIDLENSRTKNSAK--MEEIPDFNKCE 1384 E+Q+LG+ + + + + +E+ D + + Sbjct: 1134 ELQSLGMDVKILSGDEEEIEMRDLEDEEDAKQAD 1167 >gi|205372077|ref|ZP_03224894.1| DNA-directed RNA polymerase subunit beta [Bacillus coahuilensis m4-4] Length = 1185 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 433/964 (44%), Positives = 602/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ F + E++++P+LIE+Q ASY FL +EGL+ F Sbjct: 1 MTGQLVQYGRHRQRRSFARISEVLELPNLIEIQTASYQWFL----------DEGLREMFH 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+ RD+T++ PL++ +RL+ K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYPVDESKERDVTFSAPLRVKVRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 102 ETGEVKDQEVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 + +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG ++ EI+ Sbjct: 159 SATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGTDQEIIDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + L+ + GE +E+ K L K Sbjct: 219 NTLEKDNTESIEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L G +AE I + ETGEI E G +D ++L+ I + I Sbjct: 273 YKINKKLHIKNRLFGQVLAETIADPETGEILAERGTTLDRRNLDRIIPYLEKGIG----- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 T+ + ++ ++ P + Sbjct: 328 --------FKTVHQGGGVIEDETVVQSIKIFAPNE------------------------- 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G ++N+ N +DV++I DIIA I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 355 DGEKEINVISNAYVTEDVKNISAADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D ++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTATITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR V GKVT+ + YL+A EE+N +AQAN+ L +DGSF +E V R Sbjct: 535 KVNRFGFIETPYRHVDPETGKVTDRIDYLTADEEDNYVVAQANARLGDDGSFLDEEVVVR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE + RE++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ E+ Sbjct: 595 FRGENTVAKRERVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPES 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG-DLDPSTSGVDIYRLMKF 767 P VGTGME V A+ SGAA++ K+ GIVE+V+A ++ +R +E D +D Y++ KF Sbjct: 655 PIVGTGMEHVSARDSGAAVICKQRGIVERVEAKQVWVRRIEEIDGKKVKGDIDKYKMQKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V GD V + +I+ADGPS + G+LALGRN++V FM W GYN+ED++ Sbjct: 715 IRSNQGTCYNQRPIVAEGDLVEKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAI 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E +RDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 835 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGEGIILDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 177/576 (30%), Positives = 260/576 (45%), Gaps = 80/576 (13%) Query: 816 MPWHGYNFEDSMLISER--MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 M + +I ++ +V + + E + G + + + Sbjct: 661 MEHVSARDSGAAVICKQRGIVERVEAKQVWVRRIEEIDGKKVKGDIDKYKMQKFIRSNQG 720 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 ++ I+ G V G+IL + + + ++ + D + Sbjct: 721 TCYNQRPIVAEGDLVEKGEILADGPS-MEKGELALGRNVMVGFMTWDGYNYEDAIIMSER 779 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLME 988 V V + + + + E I + D DE+ I+ + + Sbjct: 780 LVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGD 839 Query: 989 ILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSI 1048 +L G+ G L + E R + +V E + Sbjct: 840 LLVGKVTPKGVTELTAEERLLHAIFGEKAR----EVRDTSLRVPHGGEGI---------- 885 Query: 1049 LEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCED 1108 K+ + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++S+ILP ED Sbjct: 886 ---ILDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEED 942 Query: 1109 MPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPL 1168 MP+L DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D D+ Sbjct: 943 MPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHVASPVFDGANEEDVWST 1002 Query: 1169 RSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADL 1228 T ++DG Sbjct: 1003 IEEAGMARDAK----------------------------TVLYDG--------------- 1019 Query: 1229 DESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1020 -----------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQ 1068 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF Sbjct: 1069 FGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFK 1128 Query: 1349 VLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 VL+KE+Q+LG+ + + + M ++ D + + Sbjct: 1129 VLIKELQSLGMDVKILSGDETEIE-MRDLEDEEEHQ 1163 >gi|289579153|ref|YP_003477780.1| DNA-directed RNA polymerase subunit beta [Thermoanaerobacter italicus Ab9] gi|289528866|gb|ADD03218.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter italicus Ab9] Length = 1234 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 455/952 (47%), Positives = 612/952 (64%), Gaps = 64/952 (6%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F K E++ +PDLIEVQK SY FL EGL+ F+ + PI +F+G Sbjct: 11 TRMSFAKIDEVLQMPDLIEVQKKSYKWFL----------EEGLREVFREISPIESFTGNL 60 Query: 73 MLEFVSYEFD-PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 LEFV Y + PK+ V++C RD TYAVP+K+ +RL + +IKE ++ Sbjct: 61 ALEFVDYRLENTPKYSVEECKDRDTTYAVPMKVKVRLT---------NRETGEIKESEVF 111 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 MGD PLMT+ GTF+I G +R++VSQL RSPG++++ + GK L + +IP++G W Sbjct: 112 MGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYYEQQFDKF---GKRLISATVIPNRGAW 168 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ E DS D+++VRIDR RKVP+T L ALG S+ +IL + D Sbjct: 169 LEYEEDSNDVVYVRIDRTRKVPITVLLRALGYSSDIQILDLLGEEEKLKATLDKDTTKSE 228 Query: 251 AADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD-------- 301 L+ K + GE +ES K L L K + +G Sbjct: 229 EEALIEIYK------RLRPGEPPTVESAKSLLYTLFFDAKRYDLAKVGRYKFNKKLALKA 282 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 + L A+ IVN TGEI +E G+ I ++ EEI + I ++ +L I N Sbjct: 283 RIANLKSAKKIVNPVTGEILVEEGEKISKEKAEEIQNCGINEVEVLV--EGKVVKVIGNN 340 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 +DI + P DVS+ ++ E++ L + D + +N N Sbjct: 341 T------------VDINKYPMPYDVSSLNIKEAV--NLSVLKEILDNFSDEEAVINEIKN 386 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 +HI K+DIIA + ++L +G G+IDDID+LGNRR+RSVGE+L+NQ+R+GL R Sbjct: 387 RIDELIPKHITKDDIIATVNYQLNLAHGIGSIDDIDHLGNRRLRSVGELLQNQFRIGLAR 446 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER +KER++ D++ + PQ+LIN +PVV+A+ EFF SSQLSQ + N LS +TH RR+ Sbjct: 447 LERVVKERMTIQDVNEITPQNLINIRPVVAAIREFFGSSQLSQFMDQTNPLSELTHKRRV 506 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH +HYGRICP ET EG NIGL+ SLT++ARVN YGFIE P Sbjct: 507 SALGPGGLSRERAGFEVRDVHYSHYGRICPIETPEGPNIGLIGSLTTYARVNEYGFIEAP 566 Query: 602 YRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 YRKV VT+++VY++A EE+ IAQAN LDE+ F + V CR E I VP Sbjct: 567 YRKVDKTTGTVTDEIVYMTADEEDEYIIAQANEPLDENNRFINDKVVCRLKEEIIAVPPT 626 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 ++DF+D SPKQ+VS+A SLIPFLENDD+NR LMG NMQRQAVPL+K EAP +GTG+E Sbjct: 627 EVDFMDVSPKQIVSVATSLIPFLENDDANRALMGSNMQRQAVPLIKTEAPIIGTGIEYKA 686 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SG ++AK G+VE+V A ++VIR+ +G D Y L+KF+RSNQ TC+NQR Sbjct: 687 AVDSGVVVLAKNDGVVEKVTADKVVIRTKDGRKDE-------YNLLKFKRSNQGTCINQR 739 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P+V GDEV++ +I DGPSTD G+LALG+N+LV FMPW GYN+ED++LISE +V +D Sbjct: 740 PIVNEGDEVKKGQVICDGPSTDHGELALGKNVLVGFMPWEGYNYEDAILISEELVRDDSL 799 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEE++ ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV GDILVGK+T Sbjct: 800 TSIHIEEYDAEARDTKLGPEEITREIPNVGEDALKDLDERGIIRIGAEVTAGDILVGKVT 859 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 PKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG VVDV++++R D Sbjct: 860 PKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKVYSRENGD 911 Score = 526 bits (1355), Expect = e-146, Method: Composition-based stats. Identities = 267/1154 (23%), Positives = 442/1154 (38%), Gaps = 138/1154 (11%) Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSD---CLCGLYVAEDIVNGETG----------EIY 321 E G + +G + + + V+ G+ + G + V G ++ Sbjct: 120 EKGTFIINGAERVIVSQLVRSPGVYYEQQFDKFGKRLISATVIPNRGAWLEYEEDSNDVV 179 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 D + + + + I +D + ++ TL D K ++AL++IY+ + Sbjct: 180 YVRIDRTRKVPITVLLRALGYSSDIQILDLLGEEEKLKATLDKDTTKSEEEALIEIYKRL 239 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 RPG+ T A+S+ LFFD+ +YDL+ VGR K N +L L + + K Sbjct: 240 RPGEPPTVESAKSLLYTLFFDAKRYDLAKVGRYKFNKKLALKA--------RIANLKSAK 291 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 +V+ G+ +++ + + + + N+ + + + + MP Sbjct: 292 KIVNPVTGEILVEEGEKISKEKAEEIQNCGINEVEVLVEGKVVKVIGNNTVDINKYPMPY 351 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH--TRRLSALGQGGVARARAG-VEM 558 D+ + + E S L ++ ++ + + + R+ L + + Sbjct: 352 DVSSLN-----IKEAVNLSVLKEILDNFSDEEAVINEIKNRIDELIPKHITKDDIIATVN 406 Query: 559 RDVHPTH-YGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYL 617 ++ H G I + + V L + + R V + DV + Sbjct: 407 YQLNLAHGIGSIDDIDHLGNRRLRSVGELL---QNQFRIGLARLERVVKERMTIQDVNEI 463 Query: 618 SAMEEENR--YIA-----QANSSLDEDGSFTEELVFCRCAGEEILV-------PREKIDF 663 + N +A +S L + T L + R + Sbjct: 464 TPQNLINIRPVVAAIREFFGSSQLSQFMDQTNPLSELTHKRRVSALGPGGLSRERAGFEV 523 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 D I P N L + + T + Sbjct: 524 RDVHYSHYGRICPIETPEGPNIGLIGSLTTYARVNEYGFIEAPYRKVDKT---TGTVTDE 580 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSV--EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 + A A + + D +I + + + Q Sbjct: 581 IVYMTADEEDEYIIAQANEPLDENNRFINDKVVCRLKEEIIAVPPTEVDFMDVSPKQIVS 640 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV----SED 837 V + A+ ++ P G E + +V ++ Sbjct: 641 VATSLIPFLENDDANRALMGSNMQRQAVPLIKTEAPIIGTGIEYKAAVDSGVVVLAKNDG 700 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 V + ++ + TK G ++ + I++ I+ G EV G ++ Sbjct: 701 VVEKVTADK---VVIRTKDGRKDEYNLLKFKRSNQGTCINQRPIVNEGDEVKKGQVICDG 757 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI 957 + + + +L + + D L V D + + H + + + Sbjct: 758 PST-DHGELALGKNVLVGFMPWEGYNYEDAILI----SEELVRDDSLTSIHIEEYDAEAR 812 Query: 958 SVE---REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD--L 1012 + E + +D LD R+ + + + G K T L+++ L Sbjct: 813 DTKLGPEEITREIPNVGEDALKDLDERGIIRIGAEVTAGDILVGKVTPKGETELTAEERL 872 Query: 1013 ISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLR 1072 + + + +V + V K+ + GD++PPGV + Sbjct: 873 LRAIFGEKAREVRDTSLRVPHGESGIVV-------------DVKVYSRENGDELPPGVNQ 919 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 +V+VFVA KR I GDKMAGRHGNKG++SRILP EDMPFL DGTP+ I LNPLGVPSRMN Sbjct: 920 MVRVFVAQKRKIAVGDKMAGRHGNKGVISRILPIEDMPFLPDGTPLQICLNPLGVPSRMN 979 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ E HLG LG +I + + D DI L + S + D Sbjct: 980 IGQVLEVHLGLVAKALGWEIITPVFDGATEDDIQELLTK--------------SGFSPDG 1025 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 +++ G++ GEPFD VTVG Sbjct: 1026 KVQL---------------------------------YDGRT-------GEPFDNKVTVG 1045 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 Y+YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQ Sbjct: 1046 YMYMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQ 1105 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 E+LT+KSDDV GR + YE+IV G + E G PESF VLVKE+Q+L L + + + Sbjct: 1106 EILTVKSDDVAGRVKTYEAIVKGENIPEPGIPESFKVLVKELQSLALDVKVITEDNQEIP 1165 Query: 1373 KM--EEIPDFNKCE 1384 EE D + + Sbjct: 1166 LKEFEEDDDSDVPD 1179 >gi|170293438|gb|ACB12772.1| DNA-directed RNA polymerase [Geobacillus thermoglucosidasius] Length = 1075 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 438/949 (46%), Positives = 597/949 (62%), Gaps = 78/949 (8%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 + + E++++P+LIE+Q +SY FL +EGL+ F+ + PI FSG LE Sbjct: 1 SYARISEVLELPNLIEIQTSSYKWFL----------DEGLREMFREISPIEDFSGNLSLE 50 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 F+ Y PK+ V++ RD+TYA PL++ +RLI K ++KEQ ++MGD Sbjct: 51 FIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLI---------NKETGEVKEQDVFMGDF 101 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 PLMT+ GTF+I G +R++VSQL RSP +++ + +GK ++ +IP++G W++ E Sbjct: 102 PLMTETGTFIINGAERVIVSQLVRSPSVYYSEKVDK---NGKRGFSATVIPNRGAWLEYE 158 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADL 254 D+KD+++VRIDR RK+PVT L ALG S+ EI+ + + L Sbjct: 159 TDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNEYLRNTLEKDNTDSTEKAL 218 Query: 255 MVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK--------GVKFLGITSDCLCG 305 + + GE IE+ K L K + + L Sbjct: 219 I------EIYERLRPGEPPTIENAKNLLISRFFDPKRYDLASVGRYKINKKLHIKNRLFN 272 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 +AE +V+ ETGE+ E G ++D ++L I + + Sbjct: 273 QRLAETLVDPETGEVIAEKGTIVDRRTLNRILPYLENGVGL-------------RVHKPF 319 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 ++ L ++ P D G +N+ N Sbjct: 320 GGVVEEEIALQSIKIYAPNDP------------------------DGEQVINVISNGYIA 355 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL RMER Sbjct: 356 EDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERV 415 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N L+ +TH RRLSALG Sbjct: 416 VRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALG 475 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A+VN +GFIETPYR+V Sbjct: 476 PGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKFGFIETPYRRV 535 Query: 606 --CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 G+VT+ + YL+A EE+N +AQAN L EDG+F EE V R GE I+V R+++D+ Sbjct: 536 DPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVARFRGENIVVKRDRVDY 595 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EAP VGTGME V A+ S Sbjct: 596 MDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGTGMEYVSARDS 655 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 GAA++ K GIVE+V+A I +R +E D +D YRL+KF RSNQ TC NQRP+V Sbjct: 656 GAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQGTCYNQRPIV 715 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++++SER+V EDV+TSI Sbjct: 716 KKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSI 775 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 776 HIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKG 835 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR D Sbjct: 836 MTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGD 884 Score = 352 bits (904), Expect = 2e-94, Method: Composition-based stats. Identities = 146/458 (31%), Positives = 202/458 (44%), Gaps = 77/458 (16%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 690 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 748 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 749 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 808 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R +++ Sbjct: 809 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKARE-VRDTSLRVPHG 867 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 + K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 868 GGGI----------------VLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 911 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 912 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 971 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 972 IASPVFDGATEEDVWNILEEAGMPRDAK----------------------------TVLY 1003 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1004 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1037 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1038 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1075 >gi|167039512|ref|YP_001662497.1| DNA-directed RNA polymerase subunit beta [Thermoanaerobacter sp. X514] gi|256752779|ref|ZP_05493624.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300915237|ref|ZP_07132552.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter sp. X561] gi|307725161|ref|YP_003904912.1| DNA-directed RNA polymerase subunit beta [Thermoanaerobacter sp. X513] gi|254765314|sp|B0K5G8|RPOB_THEPX RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166853752|gb|ABY92161.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter sp. X514] gi|256748340|gb|EEU61399.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300888961|gb|EFK84108.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter sp. X561] gi|307582222|gb|ADN55621.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacter sp. X513] Length = 1238 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 453/952 (47%), Positives = 610/952 (64%), Gaps = 64/952 (6%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 R F K E++ +PDLIEVQK SY FL EGL+ F+ + PI +F+G Sbjct: 11 TRMSFAKIDEVLQMPDLIEVQKKSYKWFL----------EEGLREVFREISPIESFTGNL 60 Query: 73 MLEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 LEFV Y + PK+ V++C RD TYAVP+K+ +RL + +IKE ++ Sbjct: 61 ALEFVDYRLENNPKYSVEECKDRDTTYAVPMKVKVRLT---------NRETGEIKESEVF 111 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 MGD PLMT+ GTF+I G +R++VSQL RSPG++++ + GK L + +IP++G W Sbjct: 112 MGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYYEQQFDKF---GKKLISATVIPNRGAW 168 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 ++ E DS DI++VRIDR RKVP+T L ALG ++ +IL + D Sbjct: 169 LEYEEDSNDIVYVRIDRTRKVPITVLLRALGYSTDIQILDLLGEEEKLKATLDKDTTKSE 228 Query: 251 AADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD-------- 301 L+ K + GE +ES K L L K + +G Sbjct: 229 EEALIEIYK------RLRPGEPPTVESAKSLLYALFFDAKRYDLAKVGRYKFNKKLALKA 282 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 + L A+ IVN TGEI +E G+ I ++ EEI + I + +L I N Sbjct: 283 RIANLKSAKKIVNPVTGEILVEEGEKISKEKAEEIQNCGINVVEVLV--EGKVVKVIGNN 340 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 +DI + P DVS+ ++ E++ L + D + +N N Sbjct: 341 T------------VDINKYPMPYDVSSLNIKEAV--NLSILKEILDNFSDEEAVINEIKN 386 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 +HI K+DIIA I ++L +G G+IDDID+LGNRR+RSVGE+L+NQ+R+GL R Sbjct: 387 RMDELVPKHITKDDIIATISYQLNLTHGIGSIDDIDHLGNRRLRSVGELLQNQFRIGLAR 446 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER +KER++ D++ + PQ+LIN +PVV+A+ EFF SSQLSQ + N L+ +TH RR+ Sbjct: 447 LERVVKERMTIQDVNEITPQNLINIRPVVAAIREFFGSSQLSQFMDQTNPLAELTHKRRV 506 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH +HYGRICP ET EG NIGL+ SLT++ARVN YGFIE P Sbjct: 507 SALGPGGLSRERAGFEVRDVHYSHYGRICPIETPEGPNIGLIGSLTTYARVNEYGFIEAP 566 Query: 602 YRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 YR+V VT+++VY++A EE+ IAQAN LDE+ F E V CR E I VP Sbjct: 567 YRRVDKTTGTVTDEIVYMTADEEDEYIIAQANEPLDENNRFINEKVVCRLKEEIIAVPPT 626 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 ++DF+D SPKQ+VS+A S+IPFLENDD+NR LMG NMQRQAVPL+K EAP +GTG+E Sbjct: 627 EVDFMDVSPKQIVSVATSMIPFLENDDANRALMGSNMQRQAVPLIKPEAPIIGTGIEYKA 686 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SG ++AK G+VE+V A ++VIR+ +G D Y L+KF+RSNQ TC+NQR Sbjct: 687 AVDSGVVVLAKNDGVVEKVAADKVVIRTKDGRRDE-------YNLLKFKRSNQGTCINQR 739 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P+V GDEV++ +I DGPSTD G+LALG+N+LV FM W GYN+ED++LISE +V +D Sbjct: 740 PIVNEGDEVKKGQVICDGPSTDHGELALGKNVLVGFMLWEGYNYEDAILISEELVRDDSL 799 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEE++ ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV GDILVGK+T Sbjct: 800 TSIHIEEYDAEARDTKLGPEEITREIPNVGEDALKDLDERGIIRIGAEVTAGDILVGKVT 859 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 PKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG VVDV++++R D Sbjct: 860 PKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKVYSRENGD 911 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 265/1141 (23%), Positives = 432/1141 (37%), Gaps = 132/1141 (11%) Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSD---CLCGLYVAEDIVNGETG----------EIY 321 E G + +G + + + V+ G+ + G + V G +I Sbjct: 120 EKGTFIINGAERVIVSQLVRSPGVYYEQQFDKFGKKLISATVIPNRGAWLEYEEDSNDIV 179 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 D + + + + I +D + ++ TL D K ++AL++IY+ + Sbjct: 180 YVRIDRTRKVPITVLLRALGYSTDIQILDLLGEEEKLKATLDKDTTKSEEEALIEIYKRL 239 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 RPG+ T A+S+ LFFD+ +YDL+ VGR K N +L L + + K Sbjct: 240 RPGEPPTVESAKSLLYALFFDAKRYDLAKVGRYKFNKKLALKA--------RIANLKSAK 291 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 +V+ G+ +++ + + + + N + + + + MP Sbjct: 292 KIVNPVTGEILVEEGEKISKEKAEEIQNCGINVVEVLVEGKVVKVIGNNTVDINKYPMPY 351 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAG-VEMRD 560 D+ + + L + ++ I R+ L + + Sbjct: 352 DVSSLNIKEAVNLSILKEI-LDNFSDEEAVINEI--KNRMDELVPKHITKDDIIATISYQ 408 Query: 561 VHPTH-YGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSA 619 ++ TH G I + + V L + + R V + DV ++ Sbjct: 409 LNLTHGIGSIDDIDHLGNRRLRSVGELL---QNQFRIGLARLERVVKERMTIQDVNEITP 465 Query: 620 MEEENR--YIA-----QANSSLDEDGSFTEELVFCRCAGEEILV-------PREKIDFID 665 N +A +S L + T L + R + D Sbjct: 466 QNLINIRPVVAAIREFFGSSQLSQFMDQTNPLAELTHKRRVSALGPGGLSRERAGFEVRD 525 Query: 666 ASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725 I P N L + + T + Sbjct: 526 VHYSHYGRICPIETPEGPNIGLIGSLTTYARVNEYGFIEAPYRRVDKT---TGTVTDEIV 582 Query: 726 AIVAKRAGIVEQVDAIRIVIRSV--EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 + A A + + + +I + + + Q V Sbjct: 583 YMTADEEDEYIIAQANEPLDENNRFINEKVVCRLKEEIIAVPPTEVDFMDVSPKQIVSVA 642 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV----SEDVF 839 + A+ ++ P G E + +V ++ V Sbjct: 643 TSMIPFLENDDANRALMGSNMQRQAVPLIKPEAPIIGTGIEYKAAVDSGVVVLAKNDGVV 702 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 + ++ + TK G + + I++ I+ G EV G ++ + Sbjct: 703 EKVAADK---VVIRTKDGRRDEYNLLKFKRSNQGTCINQRPIVNEGDEVKKGQVICDGPS 759 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 + + +L + + D L V D + + H + + + Sbjct: 760 T-DHGELALGKNVLVGFMLWEGYNYEDAILI----SEELVRDDSLTSIHIEEYDAEARDT 814 Query: 960 E---REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD--LIS 1014 + E + +D LD R+ + + + G K T L+++ L+ Sbjct: 815 KLGPEEITREIPNVGEDALKDLDERGIIRIGAEVTAGDILVGKVTPKGETELTAEERLLR 874 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 + + +V + V K+ + GD++PPGV ++V Sbjct: 875 AIFGEKAREVRDTSLRVPHGESGIVV-------------DVKVYSRENGDELPPGVNQMV 921 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 +VFVA KR I GDKMAGRHGNKG++SRILP EDMPFL DGTP+ I LNPLGVPSRMN+G Sbjct: 922 RVFVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPFLPDGTPLQICLNPLGVPSRMNIG 981 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVL 1194 Q+ E HLG LG +I + + D DI L + S + D + Sbjct: 982 QVLEVHLGLVAKALGWQIATPVFDGATEEDIQELLAK--------------SGFSPDGKV 1027 Query: 1195 RVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYI 1254 ++ G++ GEPFD VTVGY+ Sbjct: 1028 QL---------------------------------YDGRT-------GEPFDNKVTVGYM 1047 Query: 1255 YMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEM 1314 YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+ Sbjct: 1048 YMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEI 1107 Query: 1315 LTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 LT+KSDDV GR + YE+IV G + E G PESF VLVKE+Q+L L + + + Sbjct: 1108 LTVKSDDVSGRVKTYEAIVKGENIPEPGIPESFKVLVKELQSLALDVKVITEDNQEIPLK 1167 Query: 1375 E 1375 E Sbjct: 1168 E 1168 >gi|308171998|ref|YP_003918703.1| RNA polymerase subunit beta [Bacillus amyloliquefaciens DSM 7] gi|307604862|emb|CBI41233.1| RNA polymerase (beta subunit) [Bacillus amyloliquefaciens DSM 7] gi|328551808|gb|AEB22300.1| DNA-directed RNA polymerase subunit beta [Bacillus amyloliquefaciens TA208] Length = 1193 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 435/964 (45%), Positives = 602/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++ RD+TY+ PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGDPKYPVEESKERDVTYSAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD P+MT GTF+I G +R++VSQL RSP ++F G+ +GK + Sbjct: 102 ETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EIL Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D S L+ + GE +E+ K L K Sbjct: 219 NTLDKDNTENSDKALL------EIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI E G ++D ++L++ V Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDK-------------VL 319 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N L + + +L ++ P D Sbjct: 320 PYLENGIGFRKLYPNGGVVEDEVMLQSIKIYAPTD------------------------A 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + +++I DII+ I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGEQTINVIGNAYIEEAIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 476 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V GKVT + YL+A EE+N +AQAN+ L +DGSF ++ + R Sbjct: 536 KVNRFGFIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANAKLSDDGSFLDDSIVAR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE +V R ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ EA Sbjct: 596 FRGENTVVARNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEA 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V K SGAA++ K GIVE+V+A + +R E D +D Y L+KF Sbjct: 656 PIVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEIDGQKVKGNLDKYSLLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGDEV + +I+ADGPS +LG+LALGRN++V FM W GYN+ED++ Sbjct: 716 VRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+D+ GII +GAE Sbjct: 776 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 VN GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G + DV++FNR Sbjct: 836 VNDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 486 bits (1251), Expect = e-134, Method: Composition-based stats. Identities = 183/573 (31%), Positives = 270/573 (47%), Gaps = 71/573 (12%) Query: 816 MPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 M + + +I + +V ++ + +E + G + + V Sbjct: 662 MEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEIDGQKVKGNLDKYSLLKFVRSNQG 721 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 ++ I+ VG EV G+IL + + ++ + D + Sbjct: 722 TCYNQRPIVSVGDEVVKGEILADGPS-MELGELALGRNVMVGFMTWDGYNYEDAII---- 776 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 777 -MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDR-GIIRIGA 834 Query: 994 NAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 G K T ++ R F + +V+ + + Sbjct: 835 EVNDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDV---- 890 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 K+ + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++S+ILP EDMP+L Sbjct: 891 --KVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLP 948 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 DGTP+DI+LNPLGVPSRMN+GQ+ E H+G A LG I S + D D+ Sbjct: 949 DGTPIDIMLNPLGVPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAG 1008 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 T ++DG Sbjct: 1009 MSRDAK----------------------------TVLYDG-------------------- 1020 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1021 ------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQR 1074 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G++ E G PESF VL+KE Sbjct: 1075 FGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKE 1134 Query: 1354 MQALGLSIDLENSRTKNSAK--MEEIPDFNKCE 1384 +Q+LG+ + + +S + +E+ D + + Sbjct: 1135 LQSLGMDVKILSSDEEEIEMRDLEDEEDAKQAD 1167 >gi|163938110|ref|YP_001642994.1| DNA-directed RNA polymerase subunit beta [Bacillus weihenstephanensis KBAB4] gi|226699370|sp|A9VP69|RPOB_BACWK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|163860307|gb|ABY41366.1| DNA-directed RNA polymerase, beta subunit [Bacillus weihenstephanensis KBAB4] Length = 1177 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 438/964 (45%), Positives = 600/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++C RD+TYA PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYSVEECKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 102 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 219 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G V+D ++L+ I ++I Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTVLDRRTLDRILPYLEKNIG----- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 K A V ++ + Y + Sbjct: 328 -------------------FKTAKPMGGVVAGDVELQSI--------------KIYAPES 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + D++HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 355 EGERSINVIGNANITRDIKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L E G F +E + R Sbjct: 535 KVNEFGFIETPYRRVDPETGLVTGQVDYLTADEEDNYVVAQANMKLSEVGEFLDEDIVAR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 595 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLINPES 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K+ G+VE+V+A + +R V+ D +D Y++ KF Sbjct: 655 PIVGTGMEYVSAKDSGAAVICKQPGVVERVEAREVWVRRYVDVDGQTVKGDLDRYKMQKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGD+V + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 715 IRSNQGTCYNQRPIVSVGDQVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 835 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 253/1167 (21%), Positives = 428/1167 (36%), Gaps = 120/1167 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 95 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 155 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 213 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 214 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 273 Query: 415 KMNMRLNLD-------------TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGN 461 K+N +L++ P+ + E + + L + Sbjct: 274 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTVLDRRTLDRILPYLEKNIGFKTAKP 333 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 G++ ++ E + + + I +++++ FF Sbjct: 334 MGGVVAGDVELQSIKIYAPESEGE-RSINVIGNANITRDIKHITPGDILASISYFFNL-- 390 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 L ++ + + R R R V R+ +T+ Sbjct: 391 LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITPQA 446 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++ A + + + + ++ + Sbjct: 447 LINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KRRL 485 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQA 700 L E + + + I + + S + Sbjct: 486 SALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIETP 545 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDA--IRIVIRSVEGDLDPSTSG 758 + E V ++ + A +VA+ + +V ++ G+ + Sbjct: 546 YRRVDPETGLVTGQVDYLTADEEDNYVVAQANMKLSEVGEFLDEDIVARFRGENIVTNKE 605 Query: 759 VDIYRLMKFQR--SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 Y + ++ S C+ D+ R + A+ + + ++ M Sbjct: 606 RIDYMDVSPKQVVSAATACIPFL----ENDDSNRALMGANMQRQAVPLINPESPIVGTGM 661 Query: 817 PWHGYNFEDSMLISER--MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLK 874 + + +I ++ +V + + + + T G + + + Sbjct: 662 EYVSAKDSGAAVICKQPGVVERVEAREVWVRRYVDVDGQTVKGDLDRYKMQKFIRSNQGT 721 Query: 875 NIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSG 934 ++ I+ VG +V G+IL + + +L + D + Sbjct: 722 CYNQRPIVSVGDQVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII----- 775 Query: 935 VSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 776 MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVGAE 834 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K T ++ R F + +V+ + Sbjct: 835 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------LD 888 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L D Sbjct: 889 VKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLPD 948 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 949 GTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEAGM 1008 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 T ++DG Sbjct: 1009 ANDAK----------------------------TILYDG--------------------- 1019 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1020 -----RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRF 1074 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGAAY LQE+LT+KSDDV+GR + YE+IV G + E G PESF VL+KE+ Sbjct: 1075 GEMEVWALEAYGAAYTLQEILTVKSDDVIGRVKTYEAIVKGENVPEPGVPESFKVLIKEL 1134 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFN 1381 Q+LG+ + + + + D + Sbjct: 1135 QSLGMDVKMMSINDTEIEMRDTEDDDD 1161 >gi|166162242|gb|ABY83465.1| DNA-directed RNA polymerase [Geobacillus kaustophilus] Length = 1085 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 440/949 (46%), Positives = 599/949 (63%), Gaps = 78/949 (8%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 + + E++++P+LIE+Q +SY FL +EGL+ F+ + PI FSG LE Sbjct: 6 SYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFREISPIEDFSGNLSLE 55 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 F+ Y PK+ V++ RD+TYA PL++ +RLI K ++KEQ ++MGD Sbjct: 56 FIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLI---------NKETGEVKEQDVFMGDF 106 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 PLMT+ GTF+I G +R++VSQL RSP +++ + +GK Y+ +IP++G W++ E Sbjct: 107 PLMTETGTFIINGAERVIVSQLVRSPSVYYS---DKVDKNGKRGYSATVIPNRGAWLEYE 163 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADL 254 D+KD+++VRIDR RK+PVT L ALG S+ EI+ + + L Sbjct: 164 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLRNTLEKDNTDSTEKAL 223 Query: 255 MVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK--------GVKFLGITSDCLCG 305 + + GE +E+ K L + K + + L Sbjct: 224 I------EIYERLRPGEPPTLENAKNLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFN 277 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 +AE I++ ET E+ EAG +ID ++L + + + + Y V D Sbjct: 278 QRLAETIIDPETKEVIAEAGAMIDRRTLNRLLPYLEKGVGL--------QTYRPAEGVVD 329 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 D + ++ P D G +N+ N Sbjct: 330 G-----DISVQTIKIYAPNDP------------------------DGEKVINVIGNGFIA 360 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL RMER Sbjct: 361 EDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERV 420 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 ++ER+ D +++ PQ LIN +PV++A+ EFF SSQLSQ + N L+ +TH RRLSALG Sbjct: 421 VRERMPIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALG 480 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDV +HYGR+CP ET EG NIGL++SL+++A+VN +GFIETPYR+V Sbjct: 481 PGGLTRERAGFEVRDVQYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKFGFIETPYRRV 540 Query: 606 --CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 G+VT+ + YL+A EE+N +AQAN L EDG+F EE V R GE I+V R+++D+ Sbjct: 541 DPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVARFRGENIVVKRDRVDY 600 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EAP VGTGME V AK S Sbjct: 601 MDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGTGMEYVSAKDS 660 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 GAA++ K GIVE+V+A I +R +E D +D YRL+KF RSNQ TC NQRP+V Sbjct: 661 GAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQGTCYNQRPIV 720 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++++SER+V EDV+TSI Sbjct: 721 KKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSI 780 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 781 HIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKG 840 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR D Sbjct: 841 MTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGD 889 Score = 360 bits (924), Expect = 1e-96, Method: Composition-based stats. Identities = 148/461 (32%), Positives = 201/461 (43%), Gaps = 77/461 (16%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 695 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 753 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 754 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 813 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R Sbjct: 814 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAR------------- 860 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 861 ----EVRDTSLRVPHGGGGIVLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 916 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 917 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 976 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 977 IASPVFDGATEEDVWNILEEAGLARDAK----------------------------TVLY 1008 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1009 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1042 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L+ Sbjct: 1043 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLK 1083 >gi|328958739|ref|YP_004376125.1| DNA-directed RNA polymerase subunit beta [Carnobacterium sp. 17-4] gi|328675063|gb|AEB31109.1| DNA-directed RNA polymerase subunit beta [Carnobacterium sp. 17-4] Length = 1188 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 592/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ F + E++++P+LIE+Q SY FL +EGL+ FK Sbjct: 1 MAGHLVNYGKHRTRRSFSRIHEVLELPNLIEIQTDSYQWFL----------DEGLREMFK 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF Y+ PK+ V++ D Y+ P+ + LRLI K Sbjct: 51 DISPIDDFAGNLSLEFTDYQLQEPKYTVEEARSHDANYSAPIYVKLRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++ GD PLMT+ GTFVI G +R++VSQL RSPG++F G+ +GK + Sbjct: 102 ESGEVKEQEVFFGDFPLMTEMGTFVINGAERVIVSQLVRSPGVYFH---GKLDKNGKEGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W++ E D+KD+ +VRIDR RK+P+T + ALG S++ IL F Sbjct: 159 GSTLIPNRGAWLEFETDAKDLSYVRIDRTRKIPLTVLVRALGFGSDDQILEIFGDNESLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A D + + GE +S + L + K + +G Sbjct: 219 LTMEKD-LHKNAGDSRTEEALKDVYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +E+G +D ++++ Sbjct: 278 YKVNKKLNLVTRLFNQTLAETLVDPETGEIIVESGTFLDRDQIDKL------------TP 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N+ +D + + L + +V D Sbjct: 326 YLNDGLNSVTYYPSDDSVVPEPVELQVVKVFSQRDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +NM N D+ ++ DI+A + +L+ G G +DDID+LGNRR+RSVGE+ Sbjct: 362 --ERVVNMIGNKVIADETKNATPADILASMSYFFNLQEGIGNVDDIDHLGNRRIRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D+ +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLSRMERVVRERMSIQDMATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 480 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V VT+ + YL+A EE+N +AQAN+ L+EDG+F ++V R Sbjct: 540 KVNKFGFIETPYRRVNRETGLVTDQIDYLTADEEDNYVVAQANAPLNEDGTFANDIVLAR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + VP ++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ + Sbjct: 600 YVEENLEVPISRVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIHPQG 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME V A+ SGAA++ K GIVE VDA +I +R G L+ Y + KF+ Sbjct: 660 PLVGTGMEHVAARDSGAALICKNDGIVEYVDADQIRVRQENGALNK-------YAVTKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN TC NQRP+V+ GD V + +I+ADG S + G++ALG+N LVAFM W GYN+ED+++ Sbjct: 713 RSNSGTCYNQRPIVEKGDRVEKGEILADGSSMENGEMALGQNPLVAFMTWEGYNYEDAII 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEEFE ARDTKLGPEEITR++PNV ++ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSIHIEEFESEARDTKLGPEEITRELPNVGDDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G GTV DV+IF R Sbjct: 833 KDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGTVHDVKIFTRE 892 Query: 949 GID 951 D Sbjct: 893 AGD 895 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 267/1085 (24%), Positives = 397/1085 (36%), Gaps = 185/1085 (17%) Query: 339 SEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNF 398 S+ + + I + ++ + ++AL D+Y +RPG+ T + S+ Sbjct: 203 SDDQILEIFGDNESLRLTMEKDLHKNAGDSRTEEALKDVYERLRPGEPKTADSSRSLLTA 262 Query: 399 LFFDSDKYDLSTVGRVKMNMRLNLDTP--------------------DDVRHIRKEDIIA 438 FFD +YDL+ VGR K+N +LNL T + + ++ I Sbjct: 263 RFFDPKRYDLANVGRYKVNKKLNLVTRLFNQTLAETLVDPETGEIIVESGTFLDRDQIDK 322 Query: 439 IIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSV 498 + L D N D++ V + +Q R+ I ++ + + + Sbjct: 323 LTPYLNDGLNSVTYYPSDDSVVPEPVELQVVKVFSQRD--PERVVNMIGNKVIADETKNA 380 Query: 499 MPQD----LINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 P D + + + L R + + V + Sbjct: 381 TPADILASMSYFFNLQEGIGNVDDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMS 440 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK---------- 604 +M V P I P S G + N G + R Sbjct: 441 IQDMATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTR 500 Query: 605 ------VCDGKVTNDVVYLSAMEEENRYIAQANS--SLDEDGSFTEELVFCRCAGEEILV 656 V D ++ E I NS S + F R E + Sbjct: 501 DRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNKFGFIETPYRRVNRETGL 560 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 ++ID++ A + +A + P N+D + L + + Sbjct: 561 VTDQIDYLTADEEDNYVVAQANAPL--NEDGTFANDIVLARYVEENLEVPISRVDYMDVS 618 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A+ +E D+ R ++ + QR Sbjct: 619 PKQV----VAVATACIPFLENDDSNRALMGAN------------------MQRQAVPLIH 656 Query: 777 NQRPLVKVG-DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835 Q PLV G + V D A + G + + +G +++ V Sbjct: 657 PQGPLVGTGMEHVAARDSGAALICKNDGIVEYVDADQIRVRQENG-------ALNKYAV- 708 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 R + G R I+ G V G+IL Sbjct: 709 -------------TKFRRSNSGTCYNQRP----------------IVEKGDRVEKGEILA 739 Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNER 955 + M + L A + + D + V V + + Sbjct: 740 DGSS-MENGEMALGQNPLVAFMTWEGYNYEDAIIMSERLVKDDVYTSIHIEEFESEARDT 798 Query: 956 SISVEREQIELLA------RDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 + E EL +D DE I+ + ++L G+ G L Sbjct: 799 KLGPEEITRELPNVGDDALKDL-DEMGIIRIGAEVKDGDLLVGKVTPKGVTELSAEERLL 857 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + E R E KI + GD++ PG Sbjct: 858 HAIFGEKAR-----------------EVRDTSLRVPHGGGGTVHDVKIFTREAGDELSPG 900 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V +V+V++ KR I GDKMAGRHGNKG+VS I+P EDMPF+ DGTPVDI+LNPLGVPS Sbjct: 901 VNMLVRVYIVQKRKINEGDKMAGRHGNKGVVSLIMPEEDMPFMPDGTPVDIMLNPLGVPS 960 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYD 1189 RMN+GQ+ E H+G A LG I + + D ++ D Sbjct: 961 RMNIGQVLELHIGMAARQLGIHIATPVFDGASDED------------------------- 995 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 V+D E A + +++LYDG TGEPFD + Sbjct: 996 --------------------VWDTVKE---------AGMAADAKTVLYDGRTGEPFDNRI 1026 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 +VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1027 SVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1086 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q+LGL + + N + Sbjct: 1087 TLQEILTYKSDDVVGRVKTYEAIVKGEKIPKPGVPESFRVLVKELQSLGLDMKVLNENDE 1146 Query: 1370 NSAKM 1374 Sbjct: 1147 AIELR 1151 >gi|329925591|ref|ZP_08280432.1| DNA-directed RNA polymerase, beta subunit [Paenibacillus sp. HGF5] gi|328939720|gb|EGG36062.1| DNA-directed RNA polymerase, beta subunit [Paenibacillus sp. HGF5] Length = 1181 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 446/967 (46%), Positives = 606/967 (62%), Gaps = 83/967 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++++P+LIE+Q+ SY+ FL EGL+ F+ Sbjct: 1 MAGHLVQYGR-RTRRSYARINEVLEVPNLIEIQQKSYEWFL----------EEGLREMFQ 49 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G +LEF+ Y PK+ VDD RD+TYA PL++ +RLI K Sbjct: 50 DISPIQDFTGNLVLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLI---------NK 100 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F + +GK Y Sbjct: 101 ETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFS---TKVDKNGKTTY 157 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KDII+VRIDR RK+PVT L ALG ++ EIL Sbjct: 158 TATVIPNRGAWLELEMDAKDIIYVRIDRTRKIPVTVLLRALGFGTDAEILDLLGNDEYIQ 217 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + L+ + GE +E+ K L K Sbjct: 218 NTLDKDNTDSTEKALI------EIYERLRPGEPPTLENAKSLLVARFFDPKRYDLANVGR 271 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +++ +TGEI EAG +D + L+EI + + Sbjct: 272 YKINKKLHIKNRLFNQRLAESLIDIDTGEIVAEAGQTVDRRLLDEIMPYLEKSVG----- 326 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N VT D +D L V P + Sbjct: 327 -------FKNYHVTGGVMDSEDIPLQTIDVFSPIE----------------------DGK 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 V ++ N + V+HI + DII+ I +DL +G G DDID+LGNRR+RSVGE+ Sbjct: 358 VVKIIAN----ANIDKSVKHITQADIISSISYFIDLLHGIGNTDDIDHLGNRRLRSVGEL 413 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 414 LQNQFRIGLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 473 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL++FA Sbjct: 474 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFA 533 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIE PYR V KVT+ + YL+A EE+N +AQAN+ L+EDG+F +E+V R Sbjct: 534 RINEYGFIEAPYRWVDPKTSKVTDQIDYLTADEEDNYIVAQANAELNEDGTFADEMVIVR 593 Query: 649 CA---GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 + +P +++D++D SPKQVVS+A +LIPFLENDDSNR LMG NMQRQAVPLL Sbjct: 594 YNKQSDNILPMPSDRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLI 653 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG-DLDPSTSGVDIYRL 764 +AP VGTGME AK SG IV+K GI+E+ A I +R VE D + Y+L Sbjct: 654 PKAPLVGTGMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVENIDGQEVKGDIVKYKL 713 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 KF RSNQ TC+NQRP+VK GD +++ DI+ADGPST++G+LALGRN++VAFM W GYN+E Sbjct: 714 HKFMRSNQGTCINQRPIVKRGDVIKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYE 773 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 D++L+SE++V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV EE LKN+DE GII + Sbjct: 774 DAILLSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKNLDERGIIRI 833 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 GAE++ GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G +VDV++ Sbjct: 834 GAEISAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKV 893 Query: 945 FNRHGID 951 F R D Sbjct: 894 FTRENGD 900 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 186/529 (35%), Positives = 267/529 (50%), Gaps = 68/529 (12%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + I++ I+ G + GDIL + + + ++ A Sbjct: 706 GDIVKYKLHKFMRSNQGTCINQRPIVKRGDVIKKGDILADGPSTE-MGELALGRNVVVAF 764 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D L +S +V ++ I++ E + E + RD + Sbjct: 765 MTWEGYNYEDAIL-----LSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE 819 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 +N+ R I G +G K T ++ R F + +V+ Sbjct: 820 EALKNLDER-GIIRIGAEISAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSL 878 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 + + + K+ + GD++PPGV ++V+V++A KR I GDKMAGRHGN Sbjct: 879 RVPHGSDGIIVDV------KVFTRENGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGN 932 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG+V+RILP EDMPFL DGTPV +VLNPLGVPSRMN+GQ+ E HLG A + LG + S + Sbjct: 933 KGVVARILPEEDMPFLPDGTPVQVVLNPLGVPSRMNIGQVLEVHLGMAALQLGIHVASPV 992 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 D + D VFD Sbjct: 993 FDGASEYD---------------------------------------------VFD---- 1003 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 + A + +G+++LYDG TGE F+R VTVG ++M+KL HMV DK++ARSTG YS Sbjct: 1004 -----TMEEAGMQRNGKTVLYDGRTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYS 1058 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 LVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YESIV G Sbjct: 1059 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGE 1118 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME-EIPDFNKCE 1384 + E G PESF VL+KE+Q+LG+ + + + + E + D + + Sbjct: 1119 NVPEPGVPESFKVLIKELQSLGMDVKILSENEEEIEMKELDDEDDAQGD 1167 >gi|163791691|ref|ZP_02186085.1| DNA-directed RNA polymerase subunit beta [Carnobacterium sp. AT7] gi|159873039|gb|EDP67149.1| DNA-directed RNA polymerase subunit beta [Carnobacterium sp. AT7] Length = 1188 Score = 867 bits (2240), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ F + E++++P+LIE+Q SY FL +EGL+ FK Sbjct: 1 MAGHLVNYGKHRTRRSFSRIHEVLELPNLIEIQTDSYQWFL----------DEGLREMFK 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF Y+ PK+ V++ D Y+ P+ + LRLI K Sbjct: 51 DISPIDDFAGNLSLEFTDYQLQEPKYTVEEARSHDANYSAPIYVKLRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++ GD PLMT+ GTFVI G +R++VSQL RSPG++F G+ +GK + Sbjct: 102 ESGEVKEQEVFFGDFPLMTEMGTFVINGAERVIVSQLVRSPGVYFH---GKLDKNGKEGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W++ E D+KD+ +VRIDR RK+P+T + ALG S++ IL F Sbjct: 159 GSTLIPNRGAWLEFETDAKDLSYVRIDRTRKIPLTVLVRALGFGSDDQILEIFGDNESLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 219 LTMEKD-LHKNASDSRTEEALKDVYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG +D + ++ Sbjct: 278 YKVNKKLNLATRLFNQTLAETLVDPETGEIIVEAGTFLDRDQMNKL------------TP 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + ++ + + L + +V D Sbjct: 326 YLTAGLNSVTYYPSEDSVVPEPVELQVVKVFSQKDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +NM N D+ ++ DI+A + +L+ G G +DDID+LGNRR+RSVGE+ Sbjct: 362 --ERVVNMIGNKIIADETKNATPADILASMSYFFNLQEGIGNVDDIDHLGNRRIRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D+ +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLSRMERVVRERMSIQDMATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 480 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V VT+ + YL+A EE+N +AQAN+ L+EDG+FT ++V R Sbjct: 540 KVNKFGFIETPYRRVDRETGVVTDQIDYLTADEEDNYVVAQANAPLNEDGTFTNDIVLAR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + VP ++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ + Sbjct: 600 YVEENLEVPISRVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIHPQG 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME V A+ SGAA++ K GIVE VDA I +R G L+ Y + KF+ Sbjct: 660 PLVGTGMEHVAARDSGAALICKNDGIVEYVDANEIRVRQENGALNK-------YAVTKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN TC NQRP+V+ GD V + +I+ADG S + G++ALG+N LVAFM W GYN+ED+++ Sbjct: 713 RSNSGTCYNQRPIVEKGDRVEKGEILADGSSMENGEMALGQNPLVAFMTWEGYNYEDAII 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEEFE ARDTKLGPEEITR++PNV ++ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSIHIEEFESEARDTKLGPEEITRELPNVGDDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G GTV DV+IF R Sbjct: 833 KDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGTVHDVKIFTRE 892 Query: 949 GID 951 D Sbjct: 893 AGD 895 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 266/1089 (24%), Positives = 403/1089 (37%), Gaps = 193/1089 (17%) Query: 339 SEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNF 398 S+ + + I + ++ + ++AL D+Y +RPG+ T + S+ Sbjct: 203 SDDQILEIFGDNESLRLTMEKDLHKNASDSRTEEALKDVYERLRPGEPKTADSSRSLLTA 262 Query: 399 LFFDSDKYDLSTVGRVKMNMRLNLDTP--------------------DDVRHIRKEDIIA 438 FFD +YDL+ VGR K+N +LNL T + + ++ + Sbjct: 263 RFFDPKRYDLANVGRYKVNKKLNLATRLFNQTLAETLVDPETGEIIVEAGTFLDRDQMNK 322 Query: 439 IIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSV 498 + L N D++ V + +Q R+ I +I + + + Sbjct: 323 LTPYLTAGLNSVTYYPSEDSVVPEPVELQVVKVFSQ--KDPERVVNMIGNKIIADETKNA 380 Query: 499 MPQD----LINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARA 554 P D + + + L R + + V + Sbjct: 381 TPADILASMSYFFNLQEGIGNVDDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMS 440 Query: 555 GVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK---------- 604 +M V P I P S G + N G + R Sbjct: 441 IQDMATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTR 500 Query: 605 ------VCDGKVTNDVVYLSAMEEENRYIAQANS--SLDEDGSFTEELVFCRCAGEEILV 656 V D ++ E I NS S + F R E V Sbjct: 501 DRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNKFGFIETPYRRVDRETGV 560 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 ++ID++ A + +A + P N+D + L + + Sbjct: 561 VTDQIDYLTADEEDNYVVAQANAPL--NEDGTFTNDIVLARYVEENLEVPISRVDYMDVS 618 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A+ +E D+ R ++ + QR Sbjct: 619 PKQV----VAVATACIPFLENDDSNRALMGAN------------------MQRQAVPLIH 656 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q PLV G + + D G + +N + + + Sbjct: 657 PQGPLVGTG--------MEHVAARDSGAALICKN-------------DGIVEYVDANEIR 695 Query: 837 DVFTSIHIEEFEV-MARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 + + ++ V R + G R I+ G V G+IL Sbjct: 696 VRQENGALNKYAVTKFRRSNSGTCYNQRP----------------IVEKGDRVEKGEILA 739 Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNER 955 + M + L A + + D + + K++ Sbjct: 740 DGSS-MENGEMALGQNPLVAFMTWEGYNYEDAIIMS----------------ERLVKDDV 782 Query: 956 SISVEREQIELLARDKDDEQVILDRNI----------YSRLMEILCGQNAVSGPKGFKKS 1005 S+ E+ E ARD + R + + I G G K Sbjct: 783 YTSIHIEEFESEARDTKLGPEEITRELPNVGDDALKDLDEMGIIRIGAEVKDGDLLVGKV 842 Query: 1006 TVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD 1065 T +S R F + +V+ + + + KI + GD+ Sbjct: 843 TPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGTVHDV------KIFTREAGDE 896 Query: 1066 MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPL 1125 + PGV +V+V++ KR I GDKMAGRHGNKG+VS I+P EDMPF+ DGTPVDI+LNPL Sbjct: 897 LSPGVNMLVRVYIVQKRKINEGDKMAGRHGNKGVVSLIMPEEDMPFMPDGTPVDIMLNPL 956 Query: 1126 GVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKI 1185 GVPSRMN+GQ+ E H+G A LG I + + D ++ D Sbjct: 957 GVPSRMNIGQVLELHIGMAARQLGIHIATPVFDGASDED--------------------- 995 Query: 1186 SDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPF 1245 V+D E A + +++LYDG TGEPF Sbjct: 996 ------------------------VWDTVRE---------AGMAADAKTVLYDGRTGEPF 1022 Query: 1246 DRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAY 1305 D ++VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AY Sbjct: 1023 DNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1082 Query: 1306 GAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLEN 1365 GAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q+LGL + + N Sbjct: 1083 GAAYTLQEILTYKSDDVVGRVKTYEAIVKGEKIPKPGVPESFRVLVKELQSLGLDMKVLN 1142 Query: 1366 SRTKNSAKM 1374 + Sbjct: 1143 ENDELIELR 1151 >gi|170293426|gb|ACB12766.1| DNA-directed RNA polymerase [Bacillus caldovelox] Length = 1072 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 440/948 (46%), Positives = 600/948 (63%), Gaps = 78/948 (8%) Query: 17 FGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEF 76 + + E++++P+LIE+Q +SY FL +EGL+ F+ + PI FSG LEF Sbjct: 2 YARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFREISPIEDFSGNLSLEF 51 Query: 77 VSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLP 136 + Y PK+ V++ RD+TYA PL++ +RLI K ++KEQ ++MGD P Sbjct: 52 IDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLI---------NKETGEVKEQDVFMGDFP 102 Query: 137 LMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEF 196 LMT+ GTF+I G +R++VSQL RSP +++ + +GK Y+ +IP++G W++ E Sbjct: 103 LMTETGTFIINGAERVIVSQLVRSPSVYYS---DKVDKNGKRGYSATVIPNRGAWLEYET 159 Query: 197 DSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLM 255 D+KD+++VRIDR RK+PVT L ALG S+ EI+ + + L+ Sbjct: 160 DAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLRNTLEKDNTDSTEKALI 219 Query: 256 VGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK--------GVKFLGITSDCLCGL 306 + GE +E+ K L + K + + L Sbjct: 220 ------EIYERLRPGEPPTLENAKNLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFNQ 273 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDK 366 +AE I++ ET E+ EAG +ID ++L + + + + T + Sbjct: 274 RLAETIIDPETKEVIAEAGAMIDRRTLNRLLPYLEKGVGL-------------QTYRPAE 320 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 D + ++ P D G +N+ N + Sbjct: 321 GVVDGDISVQTIKIYAPNDP------------------------DGEKVINVIGNGFIAE 356 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL RMER + Sbjct: 357 DVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVV 416 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 +ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N L+ +TH RRLSALG Sbjct: 417 RERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGP 476 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV- 605 GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A+VN +GFIETPYR+V Sbjct: 477 GGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKFGFIETPYRRVD 536 Query: 606 -CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 G+VT+ + YL+A EE+N +AQAN L EDG+F EE V R GE I+V R+++D++ Sbjct: 537 PETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVARFRGENIVVKRDRVDYM 596 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EAP VGTGME V AK SG Sbjct: 597 DVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGTGMEYVSAKDSG 656 Query: 725 AAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 AA++ K GIVE+V+A I +R +E D +D YRL+KF RSNQ TC NQRP+VK Sbjct: 657 AAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQGTCYNQRPIVK 716 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++++SER+V EDV+TSIH Sbjct: 717 KGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSIH 776 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 IEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 777 IEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKGM 836 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR D Sbjct: 837 TELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGD 884 Score = 345 bits (886), Expect = 3e-92, Method: Composition-based stats. Identities = 144/455 (31%), Positives = 196/455 (43%), Gaps = 77/455 (16%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 690 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 748 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 749 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 808 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R Sbjct: 809 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAR------------- 855 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 856 ----EVRDTSLRVPHGGGGIVLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 911 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 912 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 971 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 972 IASPVFDGATEEDVWNILEEAGMARDAK----------------------------TVLY 1003 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1004 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1037 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1038 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1072 >gi|194017595|ref|ZP_03056206.1| DNA-directed RNA polymerase, beta subunit [Bacillus pumilus ATCC 7061] gi|194010867|gb|EDW20438.1| DNA-directed RNA polymerase, beta subunit [Bacillus pumilus ATCC 7061] Length = 1193 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 430/958 (44%), Positives = 599/958 (62%), Gaps = 66/958 (6%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V + RD+TY+ PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGDPKYPVAESKERDVTYSAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD P+MT GTF+I G +R++VSQL RSP ++F G+ +GK + Sbjct: 102 ETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKI--V 237 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EIL Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEILDLIGENEYLR 218 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGL-LKSLKEKGVKFL 296 + D A + ++ + +++S L ++ + Sbjct: 219 NTLEKDNTENADKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKK 278 Query: 297 GITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 + L +AE +V+ ETGEI E G ++D + L++ V N Sbjct: 279 LHIKNRLFNQKLAETLVDPETGEILAEKGQILDRRVLDK-------------VLPYLENG 325 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 L + + L ++ P D G + Sbjct: 326 IGFRKLYPNGGVVEDEVELQSIKIYAPSD------------------------QEGEQVI 361 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N+ N + V++I DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R Sbjct: 362 NVIGNAYVEEAVKNITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFR 421 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N L+ +T Sbjct: 422 IGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 481 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+VN +G Sbjct: 482 HKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFG 541 Query: 597 FIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 FIETPYR+V GKVT + YL+A EE+N +AQAN+ L EDGSF ++ + R GE Sbjct: 542 FIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANAILGEDGSFIDDNIIARFRGENT 601 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +VPR ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ E+P VGTG Sbjct: 602 VVPRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPESPIVGTG 661 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKFQRSNQN 773 ME V K SGAA++ + G+VE+V+A I +R + D +D Y L+KF RSNQ Sbjct: 662 MEYVSGKDSGAAVICRYPGVVERVEAKNIWVRRYEDVDGQQVKGNLDKYSLLKFVRSNQG 721 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 TC NQRP+V VGDEV + +I+ADGPS + G+LALGRN++V FM W GYN+ED++++SER+ Sbjct: 722 TCYNQRPIVSVGDEVVKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAIIMSERL 781 Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDI 893 V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII +GAEV GD+ Sbjct: 782 VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDL 841 Query: 894 LVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G + DV++FNR D Sbjct: 842 LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGD 899 Score = 486 bits (1250), Expect = e-134, Method: Composition-based stats. Identities = 181/560 (32%), Positives = 265/560 (47%), Gaps = 69/560 (12%) Query: 827 MLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGA 886 + +V +I + +E + G + + V ++ I+ VG Sbjct: 675 ICRYPGVVERVEAKNIWVRRYEDVDGQQVKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGD 734 Query: 887 EVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFN 946 EV G+IL + + + ++ + D + +S +V ++ Sbjct: 735 EVVKGEILADGPS-MEKGELALGRNVMVGFMTWDGYNYEDAII-----MSERLVKDDVYT 788 Query: 947 RHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKST 1006 I++ E + E + RD + RN+ R I G G K T Sbjct: 789 SIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRIGAEVKDGDLLVGKVT 847 Query: 1007 VLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDM 1066 ++ R F + +V+ + + K+ + GD++ Sbjct: 848 PKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDV------KVFNREDGDEL 901 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 PPGV ++V+V++ KR I GDKMAGRHGNKG++S+ILP EDMP+L DGTP+DI+LNPLG Sbjct: 902 PPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLG 961 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E H+G A LG I S + D D+ Sbjct: 962 VPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAGMSRDAK------- 1014 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 T ++DG TGEPFD Sbjct: 1015 ---------------------TVLYDG--------------------------RTGEPFD 1027 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1028 NRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1087 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQE+LT+KSDDVVGR + YE+IV G++ E G PESF VL+KE+Q+LG+ + + + Sbjct: 1088 AAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKILSG 1147 Query: 1367 RTKNSAK--MEEIPDFNKCE 1384 + +E+ + K + Sbjct: 1148 DEEEIEMRDLEDDEETKKAD 1167 >gi|116334277|ref|YP_795804.1| DNA-directed RNA polymerase subunit beta [Lactobacillus brevis ATCC 367] gi|122269041|sp|Q03PU9|RPOB_LACBA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|116099624|gb|ABJ64773.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Lactobacillus brevis ATCC 367] Length = 1203 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 434/963 (45%), Positives = 592/963 (61%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++D+P+LIE+Q SY+ FL +EGL+ F Sbjct: 1 MAGHLVKYGKHRTRRSYSRIKEVLDLPNLIEIQTNSYNWFL----------DEGLRDMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ VD+ D Y+ PL +TLRL Sbjct: 51 DIMPIEDFQGNLSLEFVDYQLLEPKYSVDEAREHDANYSAPLHVTLRLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG++F+ D + +G+ +Y Sbjct: 102 ETGEIKSQDVFFGDFPLMTAQGTFIINGAERVIVSQLVRSPGVYFNEDTDK---NGRTVY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+K++ +VRIDR RK+P+T + ALG S+ EIL Sbjct: 159 GATVIPNRGAWLEFETDAKNVSYVRIDRTRKIPMTELVRALGFGSDDEILDILGDNESLM 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 Q + + D V + + GE +S + L + K + +G Sbjct: 219 QTLEKDI-HKNTDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDMAPVGR 277 Query: 299 TSD--------CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L GL +AE + + +TGEI G V+D+ ++ + P L D Sbjct: 278 YKTNKKLSLKTRLLGLTLAETLADPDTGEIIAAKGTVVDKDVMKSLA-------PFLDQD 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + D+ + L I +V P D + ++ Sbjct: 331 DFKMVTFQPS----DEAVVTEPLKLQIIKVQSPDDP------------------EQEVPV 368 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G ++++L +HIR DIIA + DL+ G G DDID+LGNRR+RSVGE+ Sbjct: 369 IGNGNIDIKL--------KHIRPADIIASMNYFFDLQLGIGNTDDIDHLGNRRIRSVGEL 420 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 421 LQNQFRIGLSRMERVVRERMSIQDAATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 480 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+A Sbjct: 481 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA 540 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN YGFIETPYR+V KVT+ + YL+A EE+N +AQAN+ L++DGSF + + R Sbjct: 541 RVNKYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYVVAQANTPLNDDGSFNTDTIMAR 600 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E I ++ID++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPLL A Sbjct: 601 AQSENIETSADRIDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLNPHA 660 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P +GTG+E A SG A++++ G VE VDA I +R +G LD Y+LMKF+ Sbjct: 661 PLIGTGIEYKAAHDSGVALISQHDGTVEYVDAREIRVRREDGALD-------TYKLMKFR 713 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+VKVGD V ++++ADGPS + G+LALG+N LVAFM W GYNFED++ Sbjct: 714 RSNGGKNYNQRPIVKVGDHVDNDEVLADGPSMENGELALGQNPLVAFMTWQGYNFEDAIG 773 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 I+ER+V +DV+TSIHIEE+E ARDTKLGPEE+TR+IPNV E+ LKN+DE GII VGAEV Sbjct: 774 INERLVRDDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALKNLDEDGIIRVGAEV 833 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSL+VP G G + DV+IF R Sbjct: 834 QDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLKVPHGGGGIIQDVKIFTRE 893 Query: 949 GID 951 D Sbjct: 894 NGD 896 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 175/522 (33%), Positives = 250/522 (47%), Gaps = 67/522 (12%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 + G + + + G KN ++ I+ VG V+ ++L + + + Sbjct: 698 RREDGALDTYKLMKFRRSNGGKNYNQRPIVKVGDHVDNDEVLADGPS-MENGELALGQNP 756 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 L A + + D V V + + + + E E+ +D Sbjct: 757 LVAFMTWQGYNFEDAIGINERLVRDDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGED 816 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 + + + I I G G K T +S R F + +V+ Sbjct: 817 ALKNLDEDGI------IRVGAEVQDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVR 870 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + KI + GD++ PGV +V+V++A KR IQ GDKM+G Sbjct: 871 DTSLKVPHGGGGIIQDV------KIFTRENGDELSPGVNMMVRVYIAQKRKIQVGDKMSG 924 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG VS ++P EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG + Sbjct: 925 RHGNKGTVSVVIPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQVLELHLGMAARKLGVHM 984 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D + DI+ D Sbjct: 985 ATPVFDGAQDTDIA---------------------------------------------D 999 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 E A + +++LYDG TGEPFD+ V VG ++ LKL HMV DK++ARS Sbjct: 1000 AVKE---------AGMAADAKTVLYDGRTGEPFDKRVAVGVMHYLKLAHMVDDKMHARSI 1050 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+I Sbjct: 1051 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAI 1110 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 V G+ + G PESF VLVKE+Q+LGL + + N + Sbjct: 1111 VKGDPIPKPGVPESFRVLVKELQSLGLDMKVLNGDKEEIELR 1152 >gi|47570395|ref|ZP_00241035.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus G9241] gi|47552937|gb|EAL11348.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus G9241] Length = 1177 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 438/964 (45%), Positives = 595/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 102 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 219 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 328 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 355 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L ++G F E + R Sbjct: 535 KVNEFGFIETPYRRVDPETGLVTGQVDYLTADEEDNYVVAQANMKLSDEGEFLSEDIVAR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ RE+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 595 FRGENIVTNRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K GIVE+V+A + +R VE D +D Y++ KF Sbjct: 655 PIVGTGMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 715 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 835 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 483 bits (1243), Expect = e-133, Method: Composition-based stats. Identities = 182/568 (32%), Positives = 262/568 (46%), Gaps = 69/568 (12%) Query: 816 MPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 M + + +I + +V + + + + T G + + + Sbjct: 661 MEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQG 720 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 ++ I+ VG EV G+IL + + +L + D + Sbjct: 721 TCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII---- 775 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 776 -MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVGA 833 Query: 994 NAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 G K T ++ R F + +V+ + Sbjct: 834 EVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------L 887 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L Sbjct: 888 DVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLP 947 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 948 DGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEAG 1007 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 T ++DG Sbjct: 1008 MANDAK----------------------------TILYDG-------------------- 1019 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1020 ------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQR 1073 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE Sbjct: 1074 FGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKE 1133 Query: 1354 MQALGLSIDLENSRTKNSAKMEEIPDFN 1381 +Q+LG+ + + +S + D + Sbjct: 1134 LQSLGMDVKMMSSDDTEIEMRDTEDDDD 1161 >gi|253577171|ref|ZP_04854491.1| DNA-directed RNA polymerase, beta subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251843415|gb|EES71443.1| DNA-directed RNA polymerase, beta subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 1187 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 447/967 (46%), Positives = 602/967 (62%), Gaps = 83/967 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + EI+++P+LIE+Q+ SY+ FL EGL+ F+ Sbjct: 7 LAGHLVQYGR-RTRRSYARINEILEVPNLIEIQQKSYEWFL----------EEGLREMFQ 55 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G +LEF+ Y PK+ VDD RD+TYA PL++ +RLI K Sbjct: 56 DISPIQDFTGNLVLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLI---------NK 106 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F + +GK +Y Sbjct: 107 ETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFS---TKVDKNGKKMY 163 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KDII+VRIDR RK+PVT L ALG ++ EIL Sbjct: 164 TATVIPNRGAWLELETDAKDIIYVRIDRTRKIPVTVLLRALGFGTDAEILDLLGNDEYIR 223 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + L+ + GE +E+ K L K Sbjct: 224 NTLDKDNTDSTEKALI------EIYERLRPGEPPTLENAKSLLVARFFDPKRYDLANVGR 277 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +++ TGEI EAG ++D + L+EI + Sbjct: 278 YKINKKLHIKNRLFNQRLAETLIDTTTGEIIAEAGQMVDRRLLDEI------------LP 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N +N V D D L V P + Sbjct: 326 YLENGVGFKNYHVAGGVLDVDDVPLQTIDVFSPIE----------------------DGK 363 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 V +V N + V+HI DII+ I ++L +G G+ DDID+LGNRR+RSVGE+ Sbjct: 364 VVKVIANR----NIDKSVKHITPADIISSISYFINLLHGIGSTDDIDHLGNRRLRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVHP+HYGR+CP ET EG NIGL++SL+++A Sbjct: 480 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHPSHYGRMCPIETPEGPNIGLINSLSTYA 539 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIE PYR V G VT+ V YL+A EE+N IAQAN+ L D F +E V R Sbjct: 540 RINEYGFIEAPYRWVDPKTGTVTDQVTYLTADEEDNYVIAQANAKLTPDNKFEDEFVIVR 599 Query: 649 CA---GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 + +P ++D++D SPKQVVS+A +LIPFLENDDSNR LMG NMQRQAVPLL Sbjct: 600 YNKQSDNILTMPSSRVDYMDISPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLV 659 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPS-TSGVDIYRL 764 +AP VGTGME AK SG IV+K GI+E+ +A +I +R +E + Y+L Sbjct: 660 PKAPLVGTGMEHKAAKDSGVCIVSKYDGIIERSEANQIWLRRIEVVDGKEVKGDLVKYKL 719 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 KF RSNQ TC+NQRP+VK GD V++ DI+ADGPST+LG+LALGRN++VAFM W GYN+E Sbjct: 720 HKFMRSNQGTCINQRPIVKRGDIVKKGDILADGPSTELGELALGRNVVVAFMTWEGYNYE 779 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 D++L+SE++V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV EE L+N+DE GII V Sbjct: 780 DAILLSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRV 839 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 GAE+ GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G VVDV++ Sbjct: 840 GAEIAAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKV 899 Query: 945 FNRHGID 951 F R D Sbjct: 900 FTRENGD 906 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 267/1172 (22%), Positives = 432/1172 (36%), Gaps = 125/1172 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 100 KVRLINKETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFSTKVDKNG 159 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 T+ + ++ IY+ + + +D + N Sbjct: 160 KKMYTATVIPNRGAWLELETDAKDIIYVRIDRTRKIPVTVLLRALGFGTDAEI-LDLLGN 218 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 + YIRNTL D + AL++IY +RPG+ T A+S+ FFD R Sbjct: 219 DEYIRNTLDKDNTDSTEKALIEIYERLRPGEPPTLENAKSLLVARFFDPK--------RY 270 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + + + + L+D G+ + + R + + L+N Sbjct: 271 DLANVGRYKINKKLHIKNRLFNQRLAETLIDTTTGEIIAEAGQMVDRRLLDEILPYLENG 330 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 ++ +D+D V Q + P+ ++ ++ + N Sbjct: 331 VGF------KNYHVAGGVLDVDDVPLQTIDVFSPIED--------GKVVKVIANRNIDKS 376 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 + H + H G E L+ RV Sbjct: 377 VKHITPADIISSISYFINLLHGIGSTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVR 436 Query: 595 YGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 + V + ++ + A +E +S L + T L Sbjct: 437 E-RMSIQDANVITPQALINIRPVIASIKE----FFGSSQLSQFMDQTNPLAELTHKRRLS 491 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + + ++ + + + + L A G Sbjct: 492 ALGPGGLT------RERAGMEVRDVHPSHYGRMCPIETPEGPNIGLINSLSTYARINEYG 545 Query: 715 MESVVAK--SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 + V + + + VI L P D + ++++ + + Sbjct: 546 FIEAPYRWVDPKTGTVTDQVTYLTADEEDNYVIAQANAKLTPDNKFEDEFVIVRYNKQSD 605 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDL-------------GDLALGRNMLVAFMPWH 819 N V D + + +LV P Sbjct: 606 NILTMPSSRVDYMDISPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLVPKAPLV 665 Query: 820 GYNFE-------DSMLISER--MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSE 870 G E ++S+ ++ I + EV+ G + + Sbjct: 666 GTGMEHKAAKDSGVCIVSKYDGIIERSEANQIWLRRIEVVDGKEVKGDLVKYKLHKFMRS 725 Query: 871 EGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLR 930 I++ I+ G V GDIL + + + ++ A + + D L Sbjct: 726 NQGTCINQRPIVKRGDIVKKGDILADGPSTEL-GELALGRNVVVAFMTWEGYNYEDAIL- 783 Query: 931 VPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEIL 990 +S +V ++ I++ E + E + RD + RN+ R I Sbjct: 784 ----LSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDER-GIIR 838 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G +G K T ++ R F + +V+ + + + Sbjct: 839 VGAEIAAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDV- 897 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 K+ + GD++PPGV ++V+V++A KR I GDKMAGRHGNKG+V+RILP EDMP Sbjct: 898 -----KVFTRENGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMP 952 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 F+ DGTPV +VLNPLGVPSRMN+GQ+ E HLG A + +G + + + D D Sbjct: 953 FMPDGTPVQVVLNPLGVPSRMNIGQVLEIHLGMAALQMGIHVATPVFDGANEED------ 1006 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 VFD + A + Sbjct: 1007 ---------------------------------------VFD---------TMEEAGMQR 1018 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 +G++ILYDG TGEPF+R VTVG ++M+KL HMV DK++ARSTG YSLVTQQPLGGK+ G Sbjct: 1019 NGKTILYDGRTGEPFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFG 1078 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YESIV G + E G PESF VL Sbjct: 1079 GQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVL 1138 Query: 1351 VKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +KE+Q+LG+ + + + E + + Sbjct: 1139 IKELQSLGMDVKILTENEEEIEMKEIDDEDDA 1170 >gi|229170953|ref|ZP_04298554.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus MM3] gi|228612493|gb|EEK69714.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus MM3] Length = 1177 Score = 866 bits (2237), Expect = 0.0, Method: Composition-based stats. Identities = 436/964 (45%), Positives = 594/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 102 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 219 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 328 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 355 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 534 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V VT V YL+A EE+N +AQAN L E+G F E + R Sbjct: 535 KVNEFGFIETPYRRVDPESGLVTGQVDYLTADEEDNYVVAQANMKLSEEGEFLSEDIVAR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 595 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K G+VE+V+A + +R VE D +D Y++ KF Sbjct: 655 PIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 715 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 835 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 183/568 (32%), Positives = 263/568 (46%), Gaps = 69/568 (12%) Query: 816 MPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 M + + +I + +V + + + + T G + + + Sbjct: 661 MEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQG 720 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 ++ I+ VG EV G+IL + + +L + D + Sbjct: 721 TCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII---- 775 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 776 -MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVGA 833 Query: 994 NAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 G K T ++ R F + +V+ + Sbjct: 834 EVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------L 887 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L Sbjct: 888 DVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLP 947 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 948 DGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEAG 1007 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 T ++DG Sbjct: 1008 MANDAK----------------------------TILYDG-------------------- 1019 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1020 ------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQR 1073 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE Sbjct: 1074 FGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKE 1133 Query: 1354 MQALGLSIDLENSRTKNSAKMEEIPDFN 1381 +Q+LG+ + + +S K + D + Sbjct: 1134 LQSLGMDVKMMSSDDKEIEMRDTEDDDD 1161 >gi|324324092|gb|ADY19352.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 1177 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 437/964 (45%), Positives = 596/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 102 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 219 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 328 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 355 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L E+G F +E + R Sbjct: 535 KVNEFGFIETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVAR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 595 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K G+VE+V+A + +R VE D +D Y++ KF Sbjct: 655 PIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 715 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 835 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 265/1169 (22%), Positives = 436/1169 (37%), Gaps = 124/1169 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 95 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 155 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 213 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 214 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 273 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + A IL + N+G + + Sbjct: 274 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 333 Query: 467 VGEMLKNQYRLGLLRM-------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 +G +++ L +++ ER I ++ V I +++++ FF Sbjct: 334 MGGVVEGDVELQSIKIYAPESEGERVINVIGNANITRDV---KHITPGDILASISYFFNL 390 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L ++ + + R R R V R+ +T+ Sbjct: 391 --LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITP 444 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 L++ A + + + + ++ + Sbjct: 445 QALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KR 483 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQR 698 L E + + + I + + S + Sbjct: 484 RLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIE 543 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVA----KRAGIVEQVDAIRIVIRSVEGDLDP 754 + E V ++ + A +VA K + E +D + E + Sbjct: 544 TPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVARFRGENIVTN 603 Query: 755 STSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVA 814 + K S C+ D+ R + A+ + + ++ Sbjct: 604 KERIDYMDVSPKQVVSAATACIPFL----ENDDSNRALMGANMQRQAVPLMNPESPIVGT 659 Query: 815 FMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 M + + +I + +V + + + + T G + + + Sbjct: 660 GMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQ 719 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 ++ I+ VG EV G+IL + + +L + D + Sbjct: 720 GTCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII--- 775 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 776 --MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVG 832 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 G K T ++ R F + +V+ + Sbjct: 833 AEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------ 886 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L Sbjct: 887 LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYL 946 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 947 PDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEA 1006 Query: 1173 EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG 1232 T ++DG Sbjct: 1007 GMANDAK----------------------------TILYDG------------------- 1019 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQ Sbjct: 1020 -------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQ 1072 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+K Sbjct: 1073 RFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIK 1132 Query: 1353 EMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 E+Q+LG+ + + +S + D + Sbjct: 1133 ELQSLGMDVKMMSSDDTEIEMRDTEDDDD 1161 >gi|165873341|ref|ZP_02217943.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0488] gi|254751215|ref|ZP_05203253.1| DNA-directed RNA polymerase subunit beta [Bacillus anthracis str. Vollum] gi|164710921|gb|EDR16496.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0488] Length = 1177 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 439/964 (45%), Positives = 596/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 102 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 219 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 328 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 355 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L E+G F +E + R Sbjct: 535 KVNEFGFIETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVAR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 595 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K GIVE+V+A + +R VE D +D Y++ KF Sbjct: 655 PIVGTGMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 715 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 835 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 263/1169 (22%), Positives = 436/1169 (37%), Gaps = 124/1169 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 95 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 155 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 213 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 214 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 273 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + A IL + N+G + + Sbjct: 274 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 333 Query: 467 VGEMLKNQYRLGLLRM-------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 +G +++ L +++ ER I ++ V I +++++ FF Sbjct: 334 MGGVVEGDVELQSIKIYAPESEGERVINVIGNANITRDV---KHITPGDILASISYFFNL 390 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L ++ + + R R R V R+ +T+ Sbjct: 391 --LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITP 444 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 L++ A + + + + ++ + Sbjct: 445 QALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTH---------------------KR 483 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQR 698 L E + + + I + + S + Sbjct: 484 RLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIE 543 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVA----KRAGIVEQVDAIRIVIRSVEGDLDP 754 + E V ++ + A +VA K + E +D + E + Sbjct: 544 TPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVARFRGENIVTN 603 Query: 755 STSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVA 814 + K S C+ D+ R + A+ + + ++ Sbjct: 604 KERIDYMDVSPKQVVSAATACIPFL----ENDDSNRALMGANMQRQAVPLMNPESPIVGT 659 Query: 815 FMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 M + + +I + +V + + + + T G + + + Sbjct: 660 GMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQ 719 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 ++ I+ VG EV G+IL + + +L + D + Sbjct: 720 GTCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII--- 775 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 776 --MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVG 832 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 G K T ++ R F + +V+ + Sbjct: 833 AEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------ 886 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SR+LP EDMP+L Sbjct: 887 LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRVLPEEDMPYL 946 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 947 PDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEA 1006 Query: 1173 EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG 1232 T ++DG Sbjct: 1007 GMANDAK----------------------------TILYDG------------------- 1019 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQ Sbjct: 1020 -------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQ 1072 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAAY LQE+LT+KSDDV+GR + YE+IV G + E G PESF VL+K Sbjct: 1073 RFGEMEVWALEAYGAAYTLQEILTVKSDDVIGRVKTYEAIVKGENVPEPGVPESFKVLIK 1132 Query: 1353 EMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 E+Q+LG+ + + +S + D + Sbjct: 1133 ELQSLGMDVKMMSSDDTEIEMRDTEDDDD 1161 >gi|170293440|gb|ACB12773.1| DNA-directed RNA polymerase [Geobacillus thermodenitrificans] Length = 1076 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 443/949 (46%), Positives = 596/949 (62%), Gaps = 78/949 (8%) Query: 16 FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75 + + E++++P+LIE+Q +SY FL +EGL+ F+ + PI FSG LE Sbjct: 1 SYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFREISPIEDFSGNLSLE 50 Query: 76 FVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135 F+ Y PK+ V++ RD+TYA PL++ +RLI K ++KEQ ++MGD Sbjct: 51 FIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLI---------NKETGEVKEQDVFMGDF 101 Query: 136 PLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIE 195 PLMT+ GTF+I G +R++VSQL RSP +++ + +GK Y+ +IP++G W++ E Sbjct: 102 PLMTETGTFIINGAERVIVSQLVRSPSVYYS---DKVDKNGKRGYSATVIPNRGAWLEYE 158 Query: 196 FDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADL 254 D+KD+++VRIDR RK+PVT L ALG S+ EI+ + + L Sbjct: 159 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLRNTLEKDNTDSTEKAL 218 Query: 255 MVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK--------GVKFLGITSDCLCG 305 + + GE +E+ K L + K + + L Sbjct: 219 I------EIYERLRPGEPPTLENAKNLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFN 272 Query: 306 LYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD 365 +AE I++ ET E+ EAG +ID ++L + + Y V D Sbjct: 273 QRLAETIIDPETKEVIAEAGAMIDRRTLNRLLPYLEK--------GAGLQTYRPTEGVAD 324 Query: 366 KNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP 425 + ++ P D +N+ N Sbjct: 325 GQIS-----VQTVKIYAPNDPDN------------------------EKVINIIGNGFIA 355 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERS 485 +DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL RMER Sbjct: 356 EDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERV 415 Query: 486 IKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALG 545 ++ER+S D +++ PQ LIN +PV++AV EFF SSQLSQ + N L+ +TH RRLSALG Sbjct: 416 VRERMSIQDANTITPQQLINIRPVIAAVKEFFGSSQLSQFMDQTNPLAELTHKRRLSALG 475 Query: 546 QGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV 605 GG+ R RAG E+RDVH +HYGR+CP ET EG IGL++SL+++A+VN +GFIETPYR+V Sbjct: 476 PGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPTIGLINSLSTYAKVNKFGFIETPYRRV 535 Query: 606 --CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 GKVT+ + YL+A EE+N +AQAN L EDG+F EE V R GE I+V RE++D+ Sbjct: 536 DPETGKVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVIARFRGENIVVKRERVDY 595 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 +D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EAP VGTGME V AK S Sbjct: 596 MDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLQPEAPIVGTGMEYVSAKDS 655 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 GAAI+ K GIVE+V+A I +R +E D +D YRL+KF RSNQ TC NQRP+V Sbjct: 656 GAAIICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQGTCYNQRPIV 715 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 K GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++++SER+V EDV+TSI Sbjct: 716 KKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSI 775 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 HIEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 776 HIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKG 835 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR D Sbjct: 836 MTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGD 884 Score = 356 bits (914), Expect = 2e-95, Method: Composition-based stats. Identities = 147/459 (32%), Positives = 199/459 (43%), Gaps = 77/459 (16%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 690 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 748 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 749 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 808 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R Sbjct: 809 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAR------------- 855 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 856 ----EVRDTSLRVPHGGGGIVLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 911 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 912 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 971 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 972 IASPVFDGATEEDVWNILEEAGLARDAK----------------------------TVLY 1003 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1004 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1037 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1038 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1076 >gi|154684625|ref|YP_001419786.1| DNA-directed RNA polymerase subunit beta [Bacillus amyloliquefaciens FZB42] gi|182676553|sp|A7Z0M9|RPOB_BACA2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|154350476|gb|ABS72555.1| RpoB [Bacillus amyloliquefaciens FZB42] Length = 1196 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 434/964 (45%), Positives = 602/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++ RD+TY+ PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGDPKYPVEESKERDVTYSAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD P+MT GTF+I G +R++VSQL RSP ++F G+ +GK + Sbjct: 105 ETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EIL Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D S L+ + GE +E+ K L K Sbjct: 222 NTLDKDNTENSDKALL------EIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI E G ++D ++L++ V Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDK-------------VL 322 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N L + + +L ++ P D Sbjct: 323 PYLENGIGFRKLYPNGGVVEDEVMLQSIKIYAPTD------------------------A 358 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + +++I DII+ I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 359 EGEQTINVIGNAYIEEAIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 418 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 419 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 478 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 479 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 538 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V GKVT + YL+A EE+N +AQAN+ L +DGSF ++ + R Sbjct: 539 KVNRFGFIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANAKLSDDGSFLDDSIVAR 598 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE +V R ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ EA Sbjct: 599 FRGENTVVARNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEA 658 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V K SGAA++ K GIVE+V+A + +R E D +D Y L+KF Sbjct: 659 PIVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEIDGQKVKGNLDKYSLLKF 718 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGDEV + +I+ADGPS +LG+LALGRN++V FM W GYN+ED++ Sbjct: 719 VRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYEDAI 778 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+D+ GII +GAE Sbjct: 779 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAE 838 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 VN GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G + DV++FNR Sbjct: 839 VNDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNR 898 Query: 948 HGID 951 D Sbjct: 899 EDGD 902 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 182/573 (31%), Positives = 269/573 (46%), Gaps = 71/573 (12%) Query: 816 MPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 M + + +I + +V ++ + +E + G + + V Sbjct: 665 MEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEIDGQKVKGNLDKYSLLKFVRSNQG 724 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 ++ I+ VG EV G+IL + + ++ + D + Sbjct: 725 TCYNQRPIVSVGDEVVKGEILADGPS-MELGELALGRNVMVGFMTWDGYNYEDAII---- 779 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 780 -MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDR-GIIRIGA 837 Query: 994 NAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 G K T ++ R F + +V+ + + Sbjct: 838 EVNDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDV---- 893 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 K+ + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++S+ILP EDMP+L Sbjct: 894 --KVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLP 951 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 DGTP+DI+LNPLGVPSRMN+GQ+ E H+G A LG I S + D D+ Sbjct: 952 DGTPIDIMLNPLGVPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAG 1011 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 T ++DG Sbjct: 1012 MSRDAK----------------------------TVLYDG-------------------- 1023 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1024 ------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQR 1077 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G++ E G PESF VL+KE Sbjct: 1078 FGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKE 1137 Query: 1354 MQALGLSIDLENSRTKNSAK--MEEIPDFNKCE 1384 +Q+LG+ + + + + +E+ D + + Sbjct: 1138 LQSLGMDVKILSGDEEEIEMRDLEDEEDAKQAD 1170 >gi|315649711|ref|ZP_07902795.1| DNA-directed RNA polymerase subunit beta [Paenibacillus vortex V453] gi|315274899|gb|EFU38275.1| DNA-directed RNA polymerase subunit beta [Paenibacillus vortex V453] Length = 1181 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 443/967 (45%), Positives = 605/967 (62%), Gaps = 83/967 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++++P+LIE+Q+ SY+ FL EGL+ F+ Sbjct: 1 MAGHLVQYGR-RTRRSYARINEVLEVPNLIEIQQKSYEWFL----------EEGLREMFQ 49 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G +LEF+ Y PK+ VDD RD+TYA PL++ +RLI K Sbjct: 50 DISPIQDFTGNLVLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLI---------NK 100 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F + +GK Y Sbjct: 101 ETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFS---TKVDKNGKTTY 157 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KDII+VRIDR RK+PVT L ALG ++ EIL Sbjct: 158 TATVIPNRGAWLELEMDAKDIIYVRIDRTRKIPVTVLLRALGFGTDAEILDLLGNDEYIQ 217 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + L+ + GE +E+ K L K Sbjct: 218 NTLDKDNTDSTEKALI------EIYERLRPGEPPTLENAKSLLVARFFDPKRYDLANVGR 271 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +++ +TGEI EAG +D + L+EI + + Sbjct: 272 YKINKKLHIKNRLFNQRLAESLIDTDTGEIVAEAGQTVDRRLLDEIMPYLEKSVG----- 326 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N V D +D L V P + + + Sbjct: 327 -------FKNYHVAGGVMDSEDIPLQTIDVFSPTEDAKVVKVIA---------------- 363 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 N + V+HI + DII+ I ++L +G G DDID+LGNRR+RSVGE+ Sbjct: 364 ----------NANIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGEL 413 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 414 LQNQFRIGLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 473 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL++FA Sbjct: 474 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFA 533 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIE PYR V GKVT + YL+A EE+N +AQAN+ L+EDG+FT+E+V R Sbjct: 534 RINEYGFIEAPYRWVDPKTGKVTEQIDYLTADEEDNYIVAQANAELNEDGTFTDEMVIVR 593 Query: 649 CA---GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 + +P +++D++D SPKQVVS+A +LIPFLENDDSNR LMG NMQRQAVPLL Sbjct: 594 YNKQSDNILPMPSDRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLI 653 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG-DLDPSTSGVDIYRL 764 +AP VGTGME AK SG IV+K GI+E+ A I +R VE D + ++L Sbjct: 654 PKAPLVGTGMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVENVDGQEVKGDIVKHKL 713 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 KF RSNQ TC+NQRP+VK G+ +++ DI+ADGPST++G+LALGRN++VAFM W GYN+E Sbjct: 714 HKFMRSNQGTCINQRPIVKRGEVIKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYE 773 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 D++L+SE++V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV EE LKN+DE GII + Sbjct: 774 DAILLSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKNLDERGIIRI 833 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 GAE++ GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G +VDV++ Sbjct: 834 GAEISAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKV 893 Query: 945 FNRHGID 951 F R D Sbjct: 894 FTRENGD 900 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 186/529 (35%), Positives = 267/529 (50%), Gaps = 68/529 (12%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + I++ I+ G + GDIL + + + ++ A Sbjct: 706 GDIVKHKLHKFMRSNQGTCINQRPIVKRGEVIKKGDILADGPSTE-MGELALGRNVVVAF 764 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D L +S +V ++ I++ E + E + RD + Sbjct: 765 MTWEGYNYEDAIL-----LSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE 819 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 +N+ R I G +G K T ++ R F + +V+ Sbjct: 820 EALKNLDER-GIIRIGAEISAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSL 878 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 + + + K+ + GD++PPGV ++V+V++A KR I GDKMAGRHGN Sbjct: 879 RVPHGSDGIIVDV------KVFTRENGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGN 932 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG+V+RILP EDMPFL DGTPV +VLNPLGVPSRMN+GQ+ E HLG A + LG + S + Sbjct: 933 KGVVARILPEEDMPFLPDGTPVQVVLNPLGVPSRMNIGQVLEVHLGMAALQLGIHVASPV 992 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 D + D VFD Sbjct: 993 FDGASEYD---------------------------------------------VFD---- 1003 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 + A + +G+++LYDG TGE F+R VTVG ++M+KL HMV DK++ARSTG YS Sbjct: 1004 -----TMEEAGMQRNGKTVLYDGRTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYS 1058 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 LVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YESIV G Sbjct: 1059 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGE 1118 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME-EIPDFNKCE 1384 + E G PESF VL+KE+Q+LG+ + + + + E + D + + Sbjct: 1119 NVPEPGVPESFKVLIKELQSLGMDVKILSENEEEIEMKELDDEDDAQGD 1167 >gi|229083422|ref|ZP_04215770.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock3-44] gi|228699855|gb|EEL52492.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock3-44] Length = 1180 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 436/964 (45%), Positives = 597/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVEECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G V+D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTVLDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 331 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 DGERSINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT V YL+A EE+N +AQAN L ++G F E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGRVTGHVDYLTADEEDNYVVAQANMKLSDEGEFLSEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ RE+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K G+VE+V+A + +R VE D +D Y+++KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMLKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGD+V + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGDQVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 180/568 (31%), Positives = 263/568 (46%), Gaps = 69/568 (12%) Query: 816 MPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 M + + +I + +V + + + + T G + + + + Sbjct: 664 MEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMLKFIRSNQG 723 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 ++ I+ VG +V G+IL + + +L + D + Sbjct: 724 TCYNQRPIVSVGDQVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII---- 778 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 779 -MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVGA 836 Query: 994 NAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 G K T ++ R F + +V+ + Sbjct: 837 EVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------L 890 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L Sbjct: 891 DVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLP 950 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 951 DGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHVATPVFDGAREEDVWGTIEEAG 1010 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 T ++DG Sbjct: 1011 MANDAK----------------------------TILYDG-------------------- 1022 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1023 ------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQR 1076 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE Sbjct: 1077 FGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKE 1136 Query: 1354 MQALGLSIDLENSRTKNSAKMEEIPDFN 1381 +Q+LG+ + + +S + D + Sbjct: 1137 LQSLGMDVKMMSSDDTEIEMRDTEDDDD 1164 >gi|42779183|ref|NP_976430.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus ATCC 10987] gi|49479286|ref|YP_034454.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145116|ref|YP_081713.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus E33L] gi|196036937|ref|ZP_03104318.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus W] gi|196042329|ref|ZP_03109604.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus NVH0597-99] gi|217957677|ref|YP_002336221.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH187] gi|222093872|ref|YP_002527922.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Q1] gi|225862154|ref|YP_002747532.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus 03BB102] gi|254720823|ref|ZP_05182615.1| DNA-directed RNA polymerase subunit beta [Bacillus anthracis str. A1055] gi|300119587|ref|ZP_07057131.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus SJ1] gi|301051839|ref|YP_003790050.1| DNA-directed RNA polymerase subunit beta [Bacillus anthracis CI] gi|81397480|sp|Q6HPR6|RPOB_BACHK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|81411363|sp|Q73FA4|RPOB_BACC1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|81689844|sp|Q63H98|RPOB_BACCZ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158512711|sp|A0R8H2|RPOB_BACAH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699369|sp|B7HQT6|RPOB_BACC7 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765271|sp|C1ET31|RPOB_BACC3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765272|sp|B9IZI6|RPOB_BACCQ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|42735098|gb|AAS39038.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus ATCC 10987] gi|49330842|gb|AAT61488.1| DNA-directed RNA polymerase, beta subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978585|gb|AAU20135.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus E33L] gi|195990450|gb|EDX54437.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus W] gi|196026835|gb|EDX65467.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus NVH0597-99] gi|217065081|gb|ACJ79331.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus AH187] gi|221237920|gb|ACM10630.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus Q1] gi|225789287|gb|ACO29504.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus 03BB102] gi|298723059|gb|EFI63957.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus SJ1] gi|300374008|gb|ADK02912.1| DNA-directed RNA polymerase beta subunit [Bacillus cereus biovar anthracis str. CI] Length = 1177 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 438/964 (45%), Positives = 596/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 102 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 219 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 328 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 355 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L E+G F +E + R Sbjct: 535 KVNEFGFIETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVAR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 595 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K GIVE+V+A + +R VE D +D Y++ KF Sbjct: 655 PIVGTGMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 715 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 835 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 265/1169 (22%), Positives = 436/1169 (37%), Gaps = 124/1169 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 95 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 155 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 213 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 214 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 273 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + A IL + N+G + + Sbjct: 274 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 333 Query: 467 VGEMLKNQYRLGLLRM-------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 +G +++ L +++ ER I ++ V I +++++ FF Sbjct: 334 MGGVVEGDVELQSIKIYAPESEGERVINVIGNANITRDV---KHITPGDILASISYFFNL 390 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L ++ + + R R R V R+ +T+ Sbjct: 391 --LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITP 444 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 L++ A + + + + ++ + Sbjct: 445 QALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KR 483 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQR 698 L E + + + I + + S + Sbjct: 484 RLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIE 543 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVA----KRAGIVEQVDAIRIVIRSVEGDLDP 754 + E V ++ + A +VA K + E +D + E + Sbjct: 544 TPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVARFRGENIVTN 603 Query: 755 STSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVA 814 + K S C+ D+ R + A+ + + ++ Sbjct: 604 KERIDYMDVSPKQVVSAATACIPFL----ENDDSNRALMGANMQRQAVPLMNPESPIVGT 659 Query: 815 FMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 M + + +I + +V + + + + T G + + + Sbjct: 660 GMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQ 719 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 ++ I+ VG EV G+IL + + +L + D + Sbjct: 720 GTCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII--- 775 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 776 --MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVG 832 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 G K T ++ R F + +V+ + Sbjct: 833 AEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------ 886 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L Sbjct: 887 LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYL 946 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 947 PDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEA 1006 Query: 1173 EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG 1232 T ++DG Sbjct: 1007 GMANDAK----------------------------TILYDG------------------- 1019 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQ Sbjct: 1020 -------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQ 1072 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+K Sbjct: 1073 RFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIK 1132 Query: 1353 EMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 E+Q+LG+ + + +S + D + Sbjct: 1133 ELQSLGMDVKMMSSDDTEIEMRDTEDDDD 1161 >gi|30018372|ref|NP_830003.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus ATCC 14579] gi|206972219|ref|ZP_03233166.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus AH1134] gi|218233125|ref|YP_002364951.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus B4264] gi|218895237|ref|YP_002443648.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus G9842] gi|228963202|ref|ZP_04124371.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar sotto str. T04001] gi|296500936|ref|YP_003662636.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis BMB171] gi|41017690|sp|Q81J48|RPOB_BACCR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699367|sp|B7IT11|RPOB_BACC2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699368|sp|B7HJ40|RPOB_BACC4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|29893912|gb|AAP07204.1| DNA-directed RNA polymerase beta chain [Bacillus cereus ATCC 14579] gi|206732793|gb|EDZ49968.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus AH1134] gi|218161082|gb|ACK61074.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus B4264] gi|218541792|gb|ACK94186.1| DNA-directed RNA polymerase, beta subunit [Bacillus cereus G9842] gi|228796460|gb|EEM43899.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar sotto str. T04001] gi|296321988|gb|ADH04916.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis BMB171] gi|326937896|gb|AEA13792.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar chinensis CT-43] Length = 1177 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 437/964 (45%), Positives = 595/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 102 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 219 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 328 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 355 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L ++G F E + R Sbjct: 535 KVNEFGFIETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSDEGEFLSEDIVAR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ RE+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 595 FRGENIVTNRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K G+VE+V+A + +R VE D +D Y++ KF Sbjct: 655 PIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 715 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 835 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 262/1176 (22%), Positives = 429/1176 (36%), Gaps = 138/1176 (11%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 95 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 155 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 213 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 214 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 273 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + A IL + N+G + + Sbjct: 274 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 333 Query: 467 VGEMLKNQYRLGLLRM-------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 +G +++ L +++ ER I ++ V I +++++ FF Sbjct: 334 MGGVVEGDVELQSIKIYAPESEGERVINVIGNANITRDV---KHITPGDILASISYFFNL 390 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L ++ + + R R R V R+ +T+ Sbjct: 391 --LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITP 444 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 L++ A + + + + ++ + Sbjct: 445 QALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KR 483 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQR 698 L E + + + I + + S + Sbjct: 484 RLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIE 543 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG 758 + E V ++ + A V A + S EG+ Sbjct: 544 TPYRRVDPETGLVTGHVDYLTA-----------DEEDNYVVAQANMKLSDEGEFLSEDIV 592 Query: 759 VDIYRLMKFQRSNQNTCVNQRP--LVKVGDEVRRNDIIADGPSTDLGD---------LAL 807 + ++ P +V D +G + Sbjct: 593 ARFRGENIVTNRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNP 652 Query: 808 GRNMLVAFMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDI 865 ++ M + + +I + +V + + + + T G + + Sbjct: 653 ESPIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQ 712 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 + ++ I+ VG EV G+IL + + +L + Sbjct: 713 KFIRSNQGTCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYE 771 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSR 985 D + +S +V ++ I++ E + E + RD + RN+ R Sbjct: 772 DAII-----MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER 826 Query: 986 LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 I G G K T ++ R F + +V+ + Sbjct: 827 -GIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGI 885 Query: 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILP 1105 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP Sbjct: 886 I------LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILP 939 Query: 1106 CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI 1165 EDMP+L DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 940 EEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDV 999 Query: 1166 SPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225 T ++DG Sbjct: 1000 WGTIEEAGMANDAK----------------------------TILYDG------------ 1019 Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGG Sbjct: 1020 --------------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGG 1065 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PE Sbjct: 1066 KAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPE 1125 Query: 1346 SFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 SF VL+KE+Q+LG+ + + +S + D + Sbjct: 1126 SFKVLIKELQSLGMDVKMMSSDDTEIEMRDTEDDDD 1161 >gi|227438086|gb|ACP30541.1| RNA polymerase beta subunit [Neisseria sp. CSL 7565] Length = 777 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 425/779 (54%), Positives = 571/779 (73%), Gaps = 16/779 (2%) Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N LS ITH RR+SALG GG+ R RAG E+RDVHPTHYGR+CP ET EG NIGL++SL+ + Sbjct: 2 NPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 61 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 AR N YGF+ETPYR+V DGKVT+++ YLSA+EE IAQAN+ LD DG+ T +L+ CR Sbjct: 62 ARTNEYGFLETPYRRVIDGKVTDEIDYLSAIEEGRYVIAQANAELDSDGNLTGDLITCRE 121 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 GE I+ +++ ++D + QVVS+AASLIPFLE+DD+NR LMG NMQRQAVP L+ E P Sbjct: 122 KGETIMATADRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKP 181 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 VGTG+E VA S AIVA+R GIVE VDA RIV+R + + GVDIY LMKF R Sbjct: 182 MVGTGIERSVAVDSATAIVARRGGIVEYVDANRIVVRVHDAEATAGEVGVDIYNLMKFTR 241 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 SNQ+T +NQRP+VK GD ++R D++ADG STDLG+LALG+NM +AFMPW+GYN+EDS+LI Sbjct: 242 SNQSTNINQRPVVKAGDVLQRGDVVADGASTDLGELALGQNMTIAFMPWNGYNYEDSILI 301 Query: 830 SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 SE++ ++D +TSIHIEE V+ARDTKLG E+ITRDIPN+SE +DE GI+ +GAEV Sbjct: 302 SEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYIGAEVE 361 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 GD+LVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLR+P+G+SGTV+DV++F R G Sbjct: 362 AGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQVFTREG 421 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 I +++R+ ++ +++ +D D+ I D + +SR+ ++ GQ A GP K + ++ Sbjct: 422 IQRDKRAQAIIDSELKRYRQDLSDQLRIFDNDAFSRIERMIVGQKANGGPLKLAKDSDIT 481 Query: 1010 SDLISEYP-RSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPP 1068 S+ ++ P + W+ + DE + + +E +KV + ++ ++ ++ K +K+ GD++ P Sbjct: 482 SEYLASLPSKHDWFDIRLADESLAKQLELIKVSLQQKRAEADELYEVKKKKLTQGDELQP 541 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV ++VKVF+A+KR +Q+GDKMAGRHGNKG+VSRILP EDMP++ DG PVDIVLNPLGVP Sbjct: 542 GVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVP 601 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDY 1188 SRMN+GQI E HLGWA G+G++I ++ + + DI R+FL ++ + E + D Sbjct: 602 SRMNIGQILEVHLGWAAKGIGERIDHMLAEQRKVSDI---RAFLNQLYNSSGKQENLDDL 658 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES------G------QSIL 1236 D+ +L +AE K G ++PVFDGA E I ML +A E G Q L Sbjct: 659 SDEEILVLAENLKDGATFASPVFDGAKENEIYEMLNLAYPSEDPEIQKLGFNDSKTQITL 718 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 YDG +GEPFDR VTVG ++ LKL+H+V +K++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 719 YDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRFG 777 >gi|30260293|ref|NP_842670.1| DNA-directed RNA polymerase subunit beta [Bacillus anthracis str. Ames] gi|49183136|ref|YP_026388.1| DNA-directed RNA polymerase subunit beta [Bacillus anthracis str. Sterne] gi|50196908|ref|YP_052605.1| DNA-directed RNA polymerase subunit beta [Bacillus anthracis str. 'Ames Ancestor'] gi|167636697|ref|ZP_02394984.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0442] gi|167642037|ref|ZP_02400266.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0193] gi|170689707|ref|ZP_02880883.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0465] gi|170709438|ref|ZP_02899845.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0389] gi|177656134|ref|ZP_02937161.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0174] gi|190569397|ref|ZP_03022284.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|227812775|ref|YP_002812784.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. CDC 684] gi|229600646|ref|YP_002864753.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0248] gi|254684394|ref|ZP_05148254.1| DNA-directed RNA polymerase subunit beta [Bacillus anthracis str. CNEVA-9066] gi|254733743|ref|ZP_05191458.1| DNA-directed RNA polymerase subunit beta [Bacillus anthracis str. Western North America USA6153] gi|254739412|ref|ZP_05197112.1| DNA-directed RNA polymerase subunit beta [Bacillus anthracis str. Kruger B] gi|254756814|ref|ZP_05208842.1| DNA-directed RNA polymerase subunit beta [Bacillus anthracis str. Australia 94] gi|41017692|sp|Q81VT8|RPOB_BACAN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765269|sp|C3P9P7|RPOB_BACAA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765270|sp|C3LJ74|RPOB_BACAC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|30253614|gb|AAP24156.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. Ames] gi|49177063|gb|AAT52439.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. Sterne] gi|50082970|gb|AAT70113.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|167510003|gb|EDR85420.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0193] gi|167527871|gb|EDR90698.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0442] gi|170125655|gb|EDS94575.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0389] gi|170666332|gb|EDT17119.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0465] gi|172079854|gb|EDT64966.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0174] gi|190559490|gb|EDV13488.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|227006638|gb|ACP16381.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. CDC 684] gi|229265054|gb|ACQ46691.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. A0248] Length = 1177 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 439/964 (45%), Positives = 596/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 102 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 219 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 328 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 355 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L E+G F +E + R Sbjct: 535 KVNEFGFIETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVAR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 595 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K GIVE+V+A + +R VE D +D Y++ KF Sbjct: 655 PIVGTGMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 715 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 835 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 264/1169 (22%), Positives = 436/1169 (37%), Gaps = 124/1169 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 95 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 155 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 213 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 214 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 273 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + A IL + N+G + + Sbjct: 274 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 333 Query: 467 VGEMLKNQYRLGLLRM-------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 +G +++ L +++ ER I ++ V I +++++ FF Sbjct: 334 MGGVVEGDVELQSIKIYAPESEGERVINVIGNANITRDV---KHITPGDILASISYFFNL 390 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L ++ + + R R R V R+ +T+ Sbjct: 391 --LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITP 444 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 L++ A + + + + ++ + Sbjct: 445 QALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTH---------------------KR 483 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQR 698 L E + + + I + + S + Sbjct: 484 RLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIE 543 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVA----KRAGIVEQVDAIRIVIRSVEGDLDP 754 + E V ++ + A +VA K + E +D + E + Sbjct: 544 TPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVARFRGENIVTN 603 Query: 755 STSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVA 814 + K S C+ D+ R + A+ + + ++ Sbjct: 604 KERIDYMDVSPKQVVSAATACIPFL----ENDDSNRALMGANMQRQAVPLMNPESPIVGT 659 Query: 815 FMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 M + + +I + +V + + + + T G + + + Sbjct: 660 GMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQ 719 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 ++ I+ VG EV G+IL + + +L + D + Sbjct: 720 GTCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII--- 775 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 776 --MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVG 832 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 G K T ++ R F + +V+ + Sbjct: 833 AEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------ 886 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L Sbjct: 887 LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYL 946 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 947 PDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEA 1006 Query: 1173 EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG 1232 T ++DG Sbjct: 1007 GMANDAK----------------------------TILYDG------------------- 1019 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQ Sbjct: 1020 -------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQ 1072 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAAY LQE+LT+KSDDV+GR + YE+IV G + E G PESF VL+K Sbjct: 1073 RFGEMEVWALEAYGAAYTLQEILTVKSDDVIGRVKTYEAIVKGENVPEPGVPESFKVLIK 1132 Query: 1353 EMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 E+Q+LG+ + + +S + D + Sbjct: 1133 ELQSLGMDVKMMSSDDTEIEMRDTEDDDD 1161 >gi|229003117|ref|ZP_04160964.1| DNA-directed RNA polymerase subunit beta [Bacillus mycoides Rock1-4] gi|228758132|gb|EEM07330.1| DNA-directed RNA polymerase subunit beta [Bacillus mycoides Rock1-4] Length = 1179 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 434/964 (45%), Positives = 596/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVEECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 331 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 DGERSINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT V YL+A EE+N +AQAN L E+G F +E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGRVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K G VE+V+A + +R VE D +D Y+++KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKHPGTVERVEAREVWVRRYVEVDGQKVKGDLDRYKMLKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGD+V + +I+ADGPS + G+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGDQVVKGEILADGPSMEKGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 264/1167 (22%), Positives = 436/1167 (37%), Gaps = 124/1167 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 98 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 158 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 217 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 276 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + A IL + N+G + + Sbjct: 277 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 336 Query: 467 VGEMLKNQYRLGLLRM-------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 +G +++ L +++ ERSI ++ V I +++++ FF Sbjct: 337 MGGVVEGDVELQSIKIYAPESDGERSINVIGNANITRDV---KHITPGDILASISYFFNL 393 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L ++ + + R R R V R+ +T+ Sbjct: 394 --LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITP 447 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 L++ A + + + + ++ + Sbjct: 448 QALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KR 486 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQR 698 L E + + + I + + S + Sbjct: 487 RLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIE 546 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVA----KRAGIVEQVDAIRIVIRSVEGDLDP 754 + E V ++ + A +VA K + E +D + E + Sbjct: 547 TPYRRVDPETGRVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVARFRGENIVTN 606 Query: 755 STSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVA 814 + K S C+ D+ R + A+ + + ++ Sbjct: 607 KERIDYMDVSPKQVVSAATACIPFL----ENDDSNRALMGANMQRQAVPLMNPESPIVGT 662 Query: 815 FMPWHGYNFEDSMLISERM--VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 M + + +I + V + + + + G + + + + Sbjct: 663 GMEYVSAKDSGAAVICKHPGTVERVEAREVWVRRYVEVDGQKVKGDLDRYKMLKFIRSNQ 722 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 ++ I+ VG +V G+IL + + + +L + D + Sbjct: 723 GTCYNQRPIVSVGDQVVKGEILADGPS-MEKGELALGRNVLVGFMTWDGYNYEDAII--- 778 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 779 --MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVG 835 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 G K T ++ R F + +V+ + Sbjct: 836 AEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------ 889 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L Sbjct: 890 LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYL 949 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 950 PDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEA 1009 Query: 1173 EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG 1232 T ++DG Sbjct: 1010 GMANDAK----------------------------TILYDG------------------- 1022 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQ Sbjct: 1023 -------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQ 1075 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+K Sbjct: 1076 RFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIK 1135 Query: 1353 EMQALGLSIDLENSRTKNSAKMEEIPD 1379 E+Q+LG+ + + +S + D Sbjct: 1136 ELQSLGMDVKMMSSDDTEIEMRDTEDD 1162 >gi|229009611|ref|ZP_04166837.1| DNA-directed RNA polymerase subunit beta [Bacillus mycoides DSM 2048] gi|229131109|ref|ZP_04260021.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus BDRD-ST196] gi|229165090|ref|ZP_04292885.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH621] gi|228618353|gb|EEK75383.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH621] gi|228652322|gb|EEL08247.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus BDRD-ST196] gi|228751633|gb|EEM01433.1| DNA-directed RNA polymerase subunit beta [Bacillus mycoides DSM 2048] Length = 1180 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 437/964 (45%), Positives = 600/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVEECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G V+D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTVLDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 K A V ++ + Y + Sbjct: 331 -------------------FKTAKPMGGVVAGDVELQSI--------------KIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + D++HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 EGERSINVIGNANITRDIKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L E G F +E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGLVTGQVDYLTADEEDNYVVAQANMKLSEVGEFLDEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLINPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K+ G+VE+V+A + +R V+ D +D Y++ KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKQPGVVERVEAREVWVRRYVDVDGQTVKGDLDRYKMQKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGD+V + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGDQVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 253/1167 (21%), Positives = 428/1167 (36%), Gaps = 120/1167 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 98 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 158 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 217 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 276 Query: 415 KMNMRLNLD-------------TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGN 461 K+N +L++ P+ + E + + L + Sbjct: 277 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTVLDRRTLDRILPYLEKNIGFKTAKP 336 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 G++ ++ E + + + I +++++ FF Sbjct: 337 MGGVVAGDVELQSIKIYAPESEGE-RSINVIGNANITRDIKHITPGDILASISYFFNL-- 393 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 L ++ + + R R R V R+ +T+ Sbjct: 394 LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITPQA 449 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++ A + + + + ++ + Sbjct: 450 LINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KRRL 488 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQA 700 L E + + + I + + S + Sbjct: 489 SALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIETP 548 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDA--IRIVIRSVEGDLDPSTSG 758 + E V ++ + A +VA+ + +V ++ G+ + Sbjct: 549 YRRVDPETGLVTGQVDYLTADEEDNYVVAQANMKLSEVGEFLDEDIVARFRGENIVTNKE 608 Query: 759 VDIYRLMKFQR--SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 Y + ++ S C+ D+ R + A+ + + ++ M Sbjct: 609 RIDYMDVSPKQVVSAATACIPFL----ENDDSNRALMGANMQRQAVPLINPESPIVGTGM 664 Query: 817 PWHGYNFEDSMLISER--MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLK 874 + + +I ++ +V + + + + T G + + + Sbjct: 665 EYVSAKDSGAAVICKQPGVVERVEAREVWVRRYVDVDGQTVKGDLDRYKMQKFIRSNQGT 724 Query: 875 NIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSG 934 ++ I+ VG +V G+IL + + +L + D + Sbjct: 725 CYNQRPIVSVGDQVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII----- 778 Query: 935 VSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 779 MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVGAE 837 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K T ++ R F + +V+ + Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------LD 891 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L D Sbjct: 892 VKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLPD 951 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 952 GTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEAGM 1011 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 T ++DG Sbjct: 1012 ANDAK----------------------------TILYDG--------------------- 1022 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1023 -----RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRF 1077 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGAAY LQE+LT+KSDDV+GR + YE+IV G + E G PESF VL+KE+ Sbjct: 1078 GEMEVWALEAYGAAYTLQEILTVKSDDVIGRVKTYEAIVKGENVPEPGVPESFKVLIKEL 1137 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFN 1381 Q+LG+ + + + + D + Sbjct: 1138 QSLGMDVKMMSINDTEIEMRDTEDDDD 1164 >gi|261409529|ref|YP_003245770.1| DNA-directed RNA polymerase subunit beta [Paenibacillus sp. Y412MC10] gi|261285992|gb|ACX67963.1| DNA-directed RNA polymerase, beta subunit [Paenibacillus sp. Y412MC10] Length = 1187 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 445/967 (46%), Positives = 606/967 (62%), Gaps = 83/967 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++++P+LIE+Q+ SY+ FL EGL+ F+ Sbjct: 7 LAGHLVQYGR-RTRRSYARINEVLEVPNLIEIQQKSYEWFL----------EEGLREMFQ 55 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G +LEF+ Y PK+ VDD RD+TYA PL++ +RLI K Sbjct: 56 DISPIQDFTGNLVLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLI---------NK 106 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F + +GK Y Sbjct: 107 ETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFS---TKVDKNGKTTY 163 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KDII+VRIDR RK+PVT L ALG ++ EIL Sbjct: 164 TATVIPNRGAWLELEMDAKDIIYVRIDRTRKIPVTVLLRALGFGTDAEILDLLGNDEYIQ 223 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + L+ + GE +E+ K L K Sbjct: 224 NTLDKDNTDSTEKALI------EIYERLRPGEPPTLENAKSLLVARFFDPKRYDLANVGR 277 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +++ +TGEI EAG +D + L+EI + + Sbjct: 278 YKINKKLHIKNRLFNQRLAESLIDIDTGEIVAEAGQTVDRRLLDEIMPYLEKSVG----- 332 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N V D +D L V P + Sbjct: 333 -------FKNYHVAGGVMDSEDIPLQTIDVFSPIE----------------------DGK 363 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 V +V N + V+HI + DII+ I ++L +G G DDID+LGNRR+RSVGE+ Sbjct: 364 VVKVIAN----ANIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL++FA Sbjct: 480 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFA 539 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIE PYR V GKVT+ + YL+A EE+N +AQAN+ L+EDG+F +E+V R Sbjct: 540 RINEYGFIEAPYRWVDPKTGKVTDQIDYLTADEEDNYIVAQANAELNEDGTFADEMVIVR 599 Query: 649 CA---GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 + +P +++D++D SPKQVVS+A +LIPFLENDDSNR LMG NMQRQAVPLL Sbjct: 600 YNKQSDNILPMPSDRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLI 659 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG-DLDPSTSGVDIYRL 764 +AP VGTGME AK SG IV+K GI+E+ A I +R VE D + Y+L Sbjct: 660 PKAPLVGTGMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVENIDGQEVKGDIVKYKL 719 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 KF RSNQ TC+NQRP+VK GD +++ DI+ADGPST++G+LALGRN++VAFM W GYN+E Sbjct: 720 HKFMRSNQGTCINQRPIVKRGDVIKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYE 779 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 D++L+SE++V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV EE LKN+DE GII + Sbjct: 780 DAILLSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKNLDERGIIRI 839 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 GAE++ GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G +VDV++ Sbjct: 840 GAEISAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKV 899 Query: 945 FNRHGID 951 F R D Sbjct: 900 FTRENGD 906 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 186/529 (35%), Positives = 267/529 (50%), Gaps = 68/529 (12%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + I++ I+ G + GDIL + + + ++ A Sbjct: 712 GDIVKYKLHKFMRSNQGTCINQRPIVKRGDVIKKGDILADGPSTE-MGELALGRNVVVAF 770 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D L +S +V ++ I++ E + E + RD + Sbjct: 771 MTWEGYNYEDAIL-----LSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE 825 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 +N+ R I G +G K T ++ R F + +V+ Sbjct: 826 EALKNLDER-GIIRIGAEISAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSL 884 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 + + + K+ + GD++PPGV ++V+V++A KR I GDKMAGRHGN Sbjct: 885 RVPHGSDGIIVDV------KVFTRENGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGN 938 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG+V+RILP EDMPFL DGTPV +VLNPLGVPSRMN+GQ+ E HLG A + LG + S + Sbjct: 939 KGVVARILPEEDMPFLPDGTPVQVVLNPLGVPSRMNIGQVLEVHLGMAALQLGIHVASPV 998 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 D + D VFD Sbjct: 999 FDGASEYD---------------------------------------------VFD---- 1009 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 + A + +G+++LYDG TGE F+R VTVG ++M+KL HMV DK++ARSTG YS Sbjct: 1010 -----TMEEAGMQRNGKTVLYDGRTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYS 1064 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 LVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YESIV G Sbjct: 1065 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGE 1124 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME-EIPDFNKCE 1384 + E G PESF VL+KE+Q+LG+ + + + + E + D + + Sbjct: 1125 NVPEPGVPESFKVLIKELQSLGMDVKILSENEEEIEMKELDDEDDAQGD 1173 >gi|229053948|ref|ZP_04195382.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH603] gi|228721366|gb|EEL72887.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH603] Length = 1180 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 436/964 (45%), Positives = 600/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVEECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G V+D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTVLDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 K A V ++ + Y + Sbjct: 331 -------------------FKTAKPMGGVVAGDVELQSI--------------KIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + D++HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 EGERSINVIGNANITRDIKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L E G F +E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGLVTGQVDYLTADEEDNYVVAQANMKLSEVGEFLDEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLINPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K+ G+VE+V+A + +R ++ D +D Y++ KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKQPGVVERVEAREVWVRRYIDVDGQTVKGDLDRYKMQKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGD+V + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGDQVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 253/1167 (21%), Positives = 428/1167 (36%), Gaps = 120/1167 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 98 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 158 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 217 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 276 Query: 415 KMNMRLNLD-------------TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGN 461 K+N +L++ P+ + E + + L + Sbjct: 277 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTVLDRRTLDRILPYLEKNIGFKTAKP 336 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 G++ ++ E + + + I +++++ FF Sbjct: 337 MGGVVAGDVELQSIKIYAPESEGE-RSINVIGNANITRDIKHITPGDILASISYFFNL-- 393 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 L ++ + + R R R V R+ +T+ Sbjct: 394 LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITPQA 449 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++ A + + + + ++ + Sbjct: 450 LINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KRRL 488 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQA 700 L E + + + I + + S + Sbjct: 489 SALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIETP 548 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDA--IRIVIRSVEGDLDPSTSG 758 + E V ++ + A +VA+ + +V ++ G+ + Sbjct: 549 YRRVDPETGLVTGQVDYLTADEEDNYVVAQANMKLSEVGEFLDEDIVARFRGENIVTNKE 608 Query: 759 VDIYRLMKFQR--SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 Y + ++ S C+ D+ R + A+ + + ++ M Sbjct: 609 RIDYMDVSPKQVVSAATACIPFL----ENDDSNRALMGANMQRQAVPLINPESPIVGTGM 664 Query: 817 PWHGYNFEDSMLISER--MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLK 874 + + +I ++ +V + + + + T G + + + Sbjct: 665 EYVSAKDSGAAVICKQPGVVERVEAREVWVRRYIDVDGQTVKGDLDRYKMQKFIRSNQGT 724 Query: 875 NIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSG 934 ++ I+ VG +V G+IL + + +L + D + Sbjct: 725 CYNQRPIVSVGDQVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII----- 778 Query: 935 VSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 779 MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVGAE 837 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K T ++ R F + +V+ + Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------LD 891 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L D Sbjct: 892 VKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLPD 951 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 952 GTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEAGM 1011 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 T ++DG Sbjct: 1012 ANDAK----------------------------TILYDG--------------------- 1022 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1023 -----RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRF 1077 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGAAY LQE+LT+KSDDV+GR + YE+IV G + E G PESF VL+KE+ Sbjct: 1078 GEMEVWALEAYGAAYTLQEILTVKSDDVIGRVKTYEAIVKGENVPEPGVPESFKVLIKEL 1137 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFN 1381 Q+LG+ + + + + D + Sbjct: 1138 QSLGMDVKMMSINDTEIEMRDTEDDDD 1164 >gi|327438262|dbj|BAK14627.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Solibacillus silvestris StLB046] Length = 1181 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 436/964 (45%), Positives = 603/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ F + E++++P+LIE+Q ASY+ FL EGL+ F Sbjct: 1 MTGQLVQYGQHRQRRSFARISEVLELPNLIEIQTASYEWFL----------EEGLREMFH 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+DVD+C RD+TYA PL++ +RL K Sbjct: 51 DISPIEDFTGNLSLEFVDYTLGEPKYDVDECKERDVTYAAPLRVKVRLH---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F + +GK + Sbjct: 102 ETNEVKEQDVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFHE---KTDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EIL Sbjct: 159 GATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDIIGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGE-QVIESGKKLTSGLLKSLKEKGVK---- 294 + + L+ + GE +ES K L K + Sbjct: 219 NTLEKDNTEGTEKALL------EIYERLRPGEPPTVESAKNLLYSRFFDAKRYDLANVGR 272 Query: 295 ----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +V+ +TGEI +EAG ++D ++L+++ + Sbjct: 273 YKMNKKLHIKNRLFNQTIAETLVDPDTGEIIVEAGTLLDRRNLDKL------------IP 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + R D + ++ P D + Sbjct: 321 YLESGVGFRTLNQV-GGVLEDDITIQSVKIFAPNDEAQK--------------------- 358 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N ++V++I D++A + +L G DDID+LGNRR+RSVGE+ Sbjct: 359 ----EINVISNAYVDEEVKNITPADVLASVSYFFNLLYDVGNTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSINDTAAIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT+++ YL+A EE+N +AQANS L+EDG+F E V R Sbjct: 535 KVNKFGFIETPYRRVDPETGAVTSEIHYLTADEEDNYVVAQANSILNEDGTFANEEVVGR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G+ + +++ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL A Sbjct: 595 FRGDNTVFSKDRIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLYPNA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDI-YRLMKF 767 PFVGTGME V A+ SGAA+VAK GIVE V+A I +R +E G Y+L KF Sbjct: 655 PFVGTGMEHVDARDSGAAVVAKFDGIVEHVEARSIHVRRIEVVDGKEVKGDLTKYKLQKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ T NQRP+VKVGD V+ DI+ADGPS + G+LALG+N+LVAFM W G+N+ED++ Sbjct: 715 IRSNQGTSYNQRPIVKVGDRVKPRDILADGPSMEKGELALGQNVLVAFMTWDGFNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TS+HIEE+E +RDTKLGPEEITRDIPNV E+ L+N+D+ GII +GAE Sbjct: 775 IMSERLVKDDVYTSVHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 835 VRDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIILDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 496 bits (1277), Expect = e-137, Method: Composition-based stats. Identities = 188/555 (33%), Positives = 267/555 (48%), Gaps = 68/555 (12%) Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V SIH+ EV+ G + + + ++ I+ VG V P D Sbjct: 680 IVEHVEARSIHVRRIEVVDGKEVKGDLTKYKLQKFIRSNQGTSYNQRPIVKVGDRVKPRD 739 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDK 952 IL + + + + +L A + D + +S +V ++ I++ Sbjct: 740 ILADGPS-MEKGELALGQNVLVAFMTWDGFNYEDAVI-----MSERLVKDDVYTSVHIEE 793 Query: 953 NERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDL 1012 E + E + RD + RN+ R I G G K T Sbjct: 794 YESESRDTKLGPEEITRDIPNVGEDALRNLDDR-GIIRIGAEVRDGDILVGKVTPKGVTE 852 Query: 1013 ISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLR 1072 ++ R F + +V+ + K+ + GD++PPGV + Sbjct: 853 LTAEERLLHAIFGEKAREVRDTSLRVPHGAGGII------LDVKVFNREDGDELPPGVNQ 906 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 +V+ ++ KR I+ GDKMAGRHGNKG++SRILP EDMPF+ DGTPVDI+LNPLGVPSRMN Sbjct: 907 LVRAYIVQKRKIRVGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMN 966 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQ+ E HLG A LG + S + D D+ Sbjct: 967 IGQVLELHLGMASRYLGIHMASPVFDGANEADVW-------------------------E 1001 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 + A + G ++ILYDG +GEPFD V+VG Sbjct: 1002 TMEEAGMNRDG-----------------------------KTILYDGRSGEPFDSRVSVG 1032 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQ Sbjct: 1033 IMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1092 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 E+LT+KSDDVVGR + YE+IV G E G PESF VL+KE+Q+LG+ + + + Sbjct: 1093 EILTVKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLGMDVKMLTINDEEVE 1152 Query: 1373 KME-EIPDFNKCELK 1386 + + D ++ Sbjct: 1153 LRDLDDEDEVAAPVE 1167 >gi|311070754|ref|YP_003975677.1| DNA-directed RNA polymerase subunit beta [Bacillus atrophaeus 1942] gi|310871271|gb|ADP34746.1| DNA-directed RNA polymerase subunit beta [Bacillus atrophaeus 1942] Length = 1194 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 435/964 (45%), Positives = 603/964 (62%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++ RD+TY+ PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGDPKYPVEESKERDVTYSAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD P+MT GTF+I G +R++VSQL RSP ++F G+ +GK + Sbjct: 102 ETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITDLIGENEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D S L+ + GE +E+ K L K Sbjct: 219 NTLDKDNTENSDKALL------EIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI E G ++D ++L++ V Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDK-------------VL 319 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N L + + L ++ P D Sbjct: 320 PYLENGIGFRKLYPNGGVVEDEVTLQSIKIFAPTD------------------------A 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + +++I DII+ I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGEQTINVIGNAYIEEAIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 476 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V GKVT + YL+A EE+N +AQAN+ LD++GSF ++ + R Sbjct: 536 KVNRFGFIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANARLDDEGSFVDDSIVAR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE +VPR ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ EA Sbjct: 596 FRGENTVVPRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEA 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V K SGAA++ K GIVE+V+A + +R + D +D Y L+KF Sbjct: 656 PFVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEDVDGQKVKGNLDKYSLLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGDEV + +I+ADGPS +LG+LALGRN++V FM W GYN+ED++ Sbjct: 716 VRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII +GAE Sbjct: 776 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 VN GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G + DV++FNR Sbjct: 836 VNDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 265/1181 (22%), Positives = 438/1181 (37%), Gaps = 139/1181 (11%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 95 KVRLINKETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + D + Sbjct: 155 KKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TDLIGE 213 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+RNTL D ++ ALL+IY +RPG+ T A+S+ + FFD +YDL+ VGR Sbjct: 214 NEYLRNTLDKDNTENSDKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRY 273 Query: 415 KMNMRLNLD-------------TPDDVRHIRKEDIIAIIKILVD----LRNGKGTIDDID 457 K+N +L++ P+ + ++ I + L L NG G Sbjct: 274 KINKKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDKVLPYLENGIGFRKLYP 333 Query: 458 NLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFF 517 N G + +K + E++I ++ +++ + +S Sbjct: 334 NGGVVEDEVTLQSIKI-FAPTDAEGEQTINVIGNAYIEEAIKNITPADIISSISYFFNLL 392 Query: 518 CSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEG 577 + +H+ + + L + G++R V R + Sbjct: 393 HGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIR 452 Query: 578 HNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDED 637 I + ++++ + TN + L+ Sbjct: 453 PVIASIKEFFGSSQLSQF------------MDQTNPLAELT------------------H 482 Query: 638 GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNM 696 L E + + + + I + + S + Sbjct: 483 KRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGF 542 Query: 697 QRQAVPLLKAEAPFVGTGMESVVAKSSGAAI----VAKRAGIVEQVDAIRIVIRSVEGDL 752 + E V ++ + A + A+ VD + E + Sbjct: 543 IETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANARLDDEGSFVDDSIVARFRGENTV 602 Query: 753 DPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 P + K S C+ + +D ++ A+ Sbjct: 603 VPRNRVDYMDVSPKQVVSAATACIP---------FLENDDSNRALMGANMQRQAVPLMQP 653 Query: 813 VAFMPWHGYNF-----EDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDI 865 A G + + +I + +V ++ + +E + G + + Sbjct: 654 EAPFVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEDVDGQKVKGNLDKYSLL 713 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 V ++ I+ VG EV G+IL + + ++ + Sbjct: 714 KFVRSNQGTCYNQRPIVSVGDEVVKGEILADGPS-MELGELALGRNVMVGFMTWDGYNYE 772 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSR 985 D + +S +V ++ I++ E + E + RD + RN+ R Sbjct: 773 DAII-----MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER 827 Query: 986 LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 I G G K T ++ R F + +V+ + Sbjct: 828 -GIIRIGAEVNDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGI 886 Query: 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILP 1105 + K+ + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++S+ILP Sbjct: 887 IHDV------KVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILP 940 Query: 1106 CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI 1165 EDMP+L DGTP+DI+LNPLGVPSRMN+GQ+ E H+G A LG I S + D D+ Sbjct: 941 EEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDV 1000 Query: 1166 SPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225 T ++DG Sbjct: 1001 WETLEEAGMSRDAK----------------------------TVLYDG------------ 1020 Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGG Sbjct: 1021 --------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGG 1066 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G++ E G PE Sbjct: 1067 KAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPE 1126 Query: 1346 SFNVLVKEMQALGLSIDLENSRTKNSAK--MEEIPDFNKCE 1384 SF VL+KE+Q+LG+ + + + + +E+ D + + Sbjct: 1127 SFKVLIKELQSLGMDVKILSGDEEEIEMRDLEDDEDGKQAD 1167 >gi|157690891|ref|YP_001485353.1| DNA-directed RNA polymerase subunit beta [Bacillus pumilus SAFR-032] gi|182676554|sp|A8F976|RPOB_BACP2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157679649|gb|ABV60793.1| DNA-directed RNA polymerase subunit beta [Bacillus pumilus SAFR-032] Length = 1196 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 428/958 (44%), Positives = 599/958 (62%), Gaps = 66/958 (6%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V + RD+TY+ PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGDPKYPVAESKERDVTYSAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD P+MT GTF+I G +R++VSQL RSP ++F G+ +GK + Sbjct: 105 ETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKI--V 237 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EIL Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEILDLIGENEYLR 221 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGL-LKSLKEKGVKFL 296 + D A + ++ + +++S L ++ + Sbjct: 222 NTLEKDNTENADKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKK 281 Query: 297 GITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 + L +AE +V+ ETGEI E G ++D + L++ V N Sbjct: 282 LHIKNRLFNQKLAETLVDPETGEILAEKGQILDRRVLDK-------------VLPYLENG 328 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 L + + L ++ P D G + Sbjct: 329 IGFRKLYPNGGVVEDEVELQSIKIYAPSD------------------------QEGEQVI 364 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N+ N + V++I DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R Sbjct: 365 NVIGNAYVEEAVKNITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFR 424 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N L+ +T Sbjct: 425 IGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 484 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+VN +G Sbjct: 485 HKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFG 544 Query: 597 FIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 FIETPYR+V GKVT + YL+A EE+N +AQAN+ L +DGSF ++ + R GE Sbjct: 545 FIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANALLADDGSFIDDNIIARFRGENT 604 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +VPR ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ E+P VGTG Sbjct: 605 VVPRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPESPIVGTG 664 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKFQRSNQN 773 ME V K SGAA++ + G+VE+V+A I +R + D +D Y L+KF RSNQ Sbjct: 665 MEYVSGKDSGAAVICRYPGVVERVEAKNIWVRRYEDVDGQQVKGNLDKYSLLKFVRSNQG 724 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 TC NQRP+V VGDEV + +I+ADGPS + G+LALGRN++V FM W GYN+ED++++SER+ Sbjct: 725 TCYNQRPIVSVGDEVVKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAIIMSERL 784 Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDI 893 V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII +GAEV GD+ Sbjct: 785 VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDL 844 Query: 894 LVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G + DV++FNR D Sbjct: 845 LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGD 902 Score = 486 bits (1251), Expect = e-134, Method: Composition-based stats. Identities = 181/560 (32%), Positives = 265/560 (47%), Gaps = 69/560 (12%) Query: 827 MLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGA 886 + +V +I + +E + G + + V ++ I+ VG Sbjct: 678 ICRYPGVVERVEAKNIWVRRYEDVDGQQVKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGD 737 Query: 887 EVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFN 946 EV G+IL + + + ++ + D + +S +V ++ Sbjct: 738 EVVKGEILADGPS-MEKGELALGRNVMVGFMTWDGYNYEDAII-----MSERLVKDDVYT 791 Query: 947 RHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKST 1006 I++ E + E + RD + RN+ R I G G K T Sbjct: 792 SIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRIGAEVKDGDLLVGKVT 850 Query: 1007 VLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDM 1066 ++ R F + +V+ + + K+ + GD++ Sbjct: 851 PKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDV------KVFNREDGDEL 904 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 PPGV ++V+V++ KR I GDKMAGRHGNKG++S+ILP EDMP+L DGTP+DI+LNPLG Sbjct: 905 PPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLG 964 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E H+G A LG I S + D D+ Sbjct: 965 VPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAGMSRDAK------- 1017 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 T ++DG TGEPFD Sbjct: 1018 ---------------------TVLYDG--------------------------RTGEPFD 1030 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1031 NRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1090 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQE+LT+KSDDVVGR + YE+IV G++ E G PESF VL+KE+Q+LG+ + + + Sbjct: 1091 AAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKILSG 1150 Query: 1367 RTKNSAK--MEEIPDFNKCE 1384 + +E+ + K + Sbjct: 1151 DEEEIEMRDLEDDEETKKAD 1170 >gi|226309798|ref|YP_002769692.1| DNA-directed RNA polymerase subunit beta [Brevibacillus brevis NBRC 100599] gi|254765275|sp|C0ZIH0|RPOB_BREBN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226092746|dbj|BAH41188.1| DNA-directed RNA polymerase beta chain [Brevibacillus brevis NBRC 100599] Length = 1179 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 444/964 (46%), Positives = 605/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V+ +G R R+ + + E++ +P+LIE+Q+ SY FL +EGL+ F+ Sbjct: 1 MAGKVIQSGRHRQRRTYSRINEVLGLPNLIEIQQKSYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G +LEF+ Y PK+DVD+ RD+TYA PL++ +RL+ K Sbjct: 51 DISPIQDFTGNLVLEFIDYSLGEPKYDVDESKERDVTYAAPLRVKVRLL---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++++ + +GK + Sbjct: 102 ETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYYN---TKVDKNGKQTF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KD+I+VRIDR RK+PVT L ALG S+ EIL+ Sbjct: 159 TATVIPNRGAWLELETDAKDVIYVRIDRTRKIPVTVLLRALGFGSDIEILNLLGEDEYIK 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDNTDSTEKALI------EIYERLRPGEPPTVENAKSLLISRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +++ TGEI+ EAG +ID + LE I + I + V Sbjct: 273 YKMNKKLHLKNRLYNQRLAETLIDTTTGEIFAEAGQMIDRRVLERIVPALEGSIGFIDVR 332 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + G + ++ N D + Sbjct: 333 THG------------------------------GVLEDEAIHLQSINIFSPIEDGKIIKV 362 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G ++ +HI DI++ I ++L + G+ DDID+LGNRR+RSVGE+ Sbjct: 363 IGNGNVDKSF--------KHITPADIVSAINYFMNLLHSVGSTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDQNQITPQALINIRPVIASLKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSSFA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIETP RKV G V D+ YL+A EE+ +AQAN LDEDG F ++V CR Sbjct: 535 RINDYGFIETPRRKVDPETGFVLTDISYLTADEEDVFNVAQANQPLDEDGRFVNDMVICR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE + VPR+K+DF+D SPKQVVS+A +LIPFLENDD+NR LMG NMQRQAVPLL +A Sbjct: 595 RKGEILSVPRDKVDFMDVSPKQVVSVATALIPFLENDDANRALMGSNMQRQAVPLLIPQA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 PFVGTGME A+ SG AIVAK G VE+V A I IR E D +D Y++ KF Sbjct: 655 PFVGTGMEHKAAQDSGVAIVAKHPGQVERVTAREIWIRRYQEIDGRKVAGDLDKYKMHKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC+NQRP+V GD + + DI+ DGPST+ G+LALGRN++VAFM W GYN+ED++ Sbjct: 715 IRSNQGTCINQRPIVSTGDWIEKGDIVGDGPSTEKGELALGRNVIVAFMTWEGYNYEDAI 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 L+SE++V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ LKN+DE GII VGAE Sbjct: 775 LLSEKLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 + GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G SG +VDV++F R Sbjct: 835 IQDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGSGIIVDVKVFTR 894 Query: 948 HGID 951 D Sbjct: 895 ENGD 898 Score = 409 bits (1052), Expect = e-111, Method: Composition-based stats. Identities = 227/1149 (19%), Positives = 391/1149 (34%), Gaps = 104/1149 (9%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + + K Sbjct: 95 KVRLLNKETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYYNTKVDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEI-RDIPILYVDSVN 353 T+ + ++ IY+ + DI IL + + Sbjct: 155 KQTFTATVIPNRGAWLELETDAKDVIYVRIDRTRKIPVTVLLRALGFGSDIEIL--NLLG 212 Query: 354 NNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGR 413 + YI+NTL D + AL++IY +RPG+ T A+S+ FFD +YDL++VGR Sbjct: 213 EDEYIKNTLEKDNTDSTEKALIEIYERLRPGEPPTVENAKSLLISRFFDPKRYDLASVGR 272 Query: 414 VKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKN 473 KMN +L+L + + + L+D G+ + + R + + L+ Sbjct: 273 YKMNKKLHLK--------NRLYNQRLAETLIDTTTGEIFAEAGQMIDRRVLERIVPALEG 324 Query: 474 QYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLS 533 +R + E + + S+ I ++ + + + Sbjct: 325 SIGFIDVRTHGGVLEDEAIH-LQSINIFSPIEDGKIIKVIGNGNVDKSFKHITPADIVSA 383 Query: 534 RITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVN 593 L ++G +R V + + + S+ ++ Sbjct: 384 INYFMNLLHSVGSTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDQNQIT 443 Query: 594 AYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEE 653 I R V + + + + L E Sbjct: 444 PQALI--NIRPVIASLK----EFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRER 497 Query: 654 ILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVG 712 + + I + + S + + E FV Sbjct: 498 AGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSSFARINDYGFIETPRRKVDPETGFVL 557 Query: 713 TGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 T + + A VA+ + + + + K + Sbjct: 558 TDISYLTADEEDVFNVAQANQPL-----DEDGRFVNDMVICRRKGEILSVPRDKVDFMDV 612 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE-------- 824 + Q V + A+ +L+ P+ G E Sbjct: 613 SP--KQVVSVATALIPFLENDDANRALMGSNMQRQAVPLLIPQAPFVGTGMEHKAAQDSG 670 Query: 825 -DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIIC 883 + V I I ++ + G + + + I++ I+ Sbjct: 671 VAIVAKHPGQVERVTAREIWIRRYQEIDGRKVAGDLDKYKMHKFIRSNQGTCINQRPIVS 730 Query: 884 VGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVR 943 G + GD +VG + + ++ A + + D L Sbjct: 731 TGDWIEKGD-IVGDGPSTEKGELALGRNVIVAFMTWEGYNYEDAILLS------------ 777 Query: 944 IFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK 1003 + K++ S+ E+ E ARD + R+I + + L + Sbjct: 778 ----EKLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERG------ 827 Query: 1004 KSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWG 1063 I + + + V L + +I ++ + + Sbjct: 828 ---------IIRVGAEIQDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878 Query: 1064 DDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLN 1123 G++ VKVF GD++ G+ + Sbjct: 879 PHGGSGIIVDVKVFTREN-----GDELPP-----GVNQLV-------------------- 908 Query: 1124 PLGVPSRMNVGQIFETHLG-WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182 R+ + Q + +G G K + + P S +E V+ Sbjct: 909 ------RVYIAQKRKISVGDKMAGRHGNKGVIARIMAEEDMPFLPDGSPVEIVLNPLGVP 962 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242 +++ G+ V+TPVFDGA + + L A LD G++IL+DG TG Sbjct: 963 SRMNIGQVLETHLGMAAKLLGIHVATPVFDGARQAEVFETLAEAGLDRDGKTILFDGRTG 1022 Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302 EPFDR VTVG +YMLKL H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW + Sbjct: 1023 EPFDRRVTVGCVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1082 Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE+Q+LG+ + Sbjct: 1083 EAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGMDVK 1142 Query: 1363 LENSRTKNS 1371 + + + Sbjct: 1143 ILSGDEQEI 1151 >gi|229074163|ref|ZP_04207209.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock4-18] gi|229094824|ref|ZP_04225829.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock3-29] gi|229100901|ref|ZP_04231705.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock3-28] gi|229113778|ref|ZP_04243213.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock1-3] gi|228669649|gb|EEL25056.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock1-3] gi|228682480|gb|EEL36553.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock3-28] gi|228688567|gb|EEL42440.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock3-29] gi|228708933|gb|EEL61060.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock4-18] Length = 1180 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 438/964 (45%), Positives = 600/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V++C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVEECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G V+D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTVLDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 K A V ++ + Y + Sbjct: 331 -------------------FKTAKPMGGVVAGDVELQSI--------------KIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + D++HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 EGERVINVIGNANITRDIKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L E+G F +E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGLVTGQVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K G+VE+V+A + +R VE D +D Y++ KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 258/1167 (22%), Positives = 426/1167 (36%), Gaps = 120/1167 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 98 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 158 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 217 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 276 Query: 415 KMNMRLNLD-------------TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGN 461 K+N +L++ P+ + E + + L + Sbjct: 277 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTVLDRRTLDRILPYLEKNIGFKTAKP 336 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 G++ ++ E + + + I +++++ FF Sbjct: 337 MGGVVAGDVELQSIKIYAPESEGE-RVINVIGNANITRDIKHITPGDILASISYFFNL-- 393 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 L ++ + + R R R V R+ +T+ Sbjct: 394 LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITPQA 449 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++ A + + + + ++ + Sbjct: 450 LINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KRRL 488 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQA 700 L E + + + I + + S + Sbjct: 489 SALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIETP 548 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVA----KRAGIVEQVDAIRIVIRSVEGDLDPST 756 + E V ++ + A +VA K + E +D + E + Sbjct: 549 YRRVDPETGLVTGQVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVARFRGENIVTNKE 608 Query: 757 SGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 + K S C+ D+ R + A+ + + ++ M Sbjct: 609 RIDYMDVSPKQVVSAATACIPFL----ENDDSNRALMGANMQRQAVPLMNPESPIVGTGM 664 Query: 817 PWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLK 874 + + +I + +V + + + + T G + + + Sbjct: 665 EYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQGT 724 Query: 875 NIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSG 934 ++ I+ VG EV G+IL + + +L + D + Sbjct: 725 CYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII----- 778 Query: 935 VSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 779 MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVGAE 837 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K T ++ R F + +V+ + Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------LD 891 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L D Sbjct: 892 VKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLPD 951 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 952 GTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEAGM 1011 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 T ++DG Sbjct: 1012 ANDAK----------------------------TILYDG--------------------- 1022 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1023 -----RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRF 1077 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGAAY LQE+LT+KSDDV+GR + YE+IV G + E G PESF VL+KE+ Sbjct: 1078 GEMEVWALEAYGAAYTLQEILTVKSDDVIGRVKTYEAIVKGENVPEPGVPESFKVLIKEL 1137 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFN 1381 Q+LG+ + + +S K + D + Sbjct: 1138 QSLGMDVKMMSSDDKEIEMRDTEDDDD 1164 >gi|288554717|ref|YP_003426652.1| DNA-directed RNA polymerase subunit beta [Bacillus pseudofirmus OF4] gi|288545877|gb|ADC49760.1| DNA-directed RNA polymerase subunit beta [Bacillus pseudofirmus OF4] Length = 1180 Score = 864 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 441/964 (45%), Positives = 599/964 (62%), Gaps = 77/964 (7%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARINEVLELPNLIEIQTASYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G +LEF+ Y PK+ VD+ RD+T+A PL++ +RLI K Sbjct: 51 DISPIQDFTGNLVLEFIDYSLGEPKYPVDESKERDVTFAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ + +GK + Sbjct: 102 ETGEVKEQEVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSQ---KTDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KDI++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 TATVIPNRGAWLELETDAKDIVYVRIDRTRKIPVTVLLRALGFGSDQEIIDLLGEDEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 219 NSLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGE+ E G ++D ++L+ I + +I Sbjct: 273 YKINKKLHIKNRLFNQRLAETLVDPETGEVIAEEGTLLDRRTLDRILPNLENNIG----- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 R + + + L +V P D Sbjct: 328 -------FRTARASGGVVEDSEIDLQSIKVYAPDD------------------------Q 356 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G + + N +V+HI DIIA I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 357 EGEQVIRIIGNGLVEREVKHITPADIIASINYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 416 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 417 LQNQFRIGLSRMERVVRERMSIQDPNMITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 476 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 477 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 536 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GF+ETPYR+V GKVT + YL+A EE+N +AQAN+ L +DGSF ++ + R Sbjct: 537 KVNEFGFMETPYRRVDPETGKVTAQIDYLTADEEDNYVVAQANARLADDGSFVDDNIIAR 596 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE +VPRE++D++D SPKQVVS A S IPFLENDDSNR LMG NMQRQAVPLL EA Sbjct: 597 FRGENTVVPRERLDYMDVSPKQVVSAATSCIPFLENDDSNRALMGANMQRQAVPLLIPEA 656 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPS-TSGVDIYRLMKF 767 P VGTGME V AK SGAAIV+K G+VE+V A I +R E +D YRL KF Sbjct: 657 PLVGTGMEHVSAKDSGAAIVSKHPGVVERVTAKEIWVRRTEEVDGKQVKGDLDKYRLQKF 716 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ T NQRP+V+ GD + + +I+ADGPS + G++ALGRN+LV FM W GYN+ED++ Sbjct: 717 IRSNQGTSYNQRPIVREGDVIEKREILADGPSMESGEMALGRNVLVGFMTWDGYNYEDAI 776 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TS+HIEE+E ARDTKLGPEEITRDIPNV E+ LKN+DE GII VGAE Sbjct: 777 ILSERLVKDDVYTSVHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRVGAE 836 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLR P G G V+DV+IFNR Sbjct: 837 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIVLDVKIFNR 896 Query: 948 HGID 951 D Sbjct: 897 EDGD 900 Score = 529 bits (1363), Expect = e-147, Method: Composition-based stats. Identities = 256/1052 (24%), Positives = 401/1052 (38%), Gaps = 108/1052 (10%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D + + Y+RN+L D + ALL+IY +RPG+ T A+S+ + FFD +YDL Sbjct: 208 IDLLGEDEYLRNSLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDL 267 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 + VGR K+N +L++ + + L + + + R++ Sbjct: 268 ANVGRYKINKKLHIKNRLFNQRL-----------AETLVDPETGEVIAEEGTLLDRRTLD 316 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 +L N R R+ + +ID + V + + + +H Sbjct: 317 RILPNLENNIGFRTARASGGVVEDSEIDLQSIKVYAPDDQEGEQVIRIIGNGLVEREVKH 376 Query: 529 VNSLSRITHTRRL-SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 + I + L G + R + G + + G + Sbjct: 377 ITPADIIASINYFFNLLHGVGDTDDIDHLGNRRLRS--VGELLQNQFRIGLSRMERVVRE 434 Query: 588 SFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 + + I + + + + + + L Sbjct: 435 RMS-IQDPNMITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPG 493 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKA 706 E + + + I + + S + + Sbjct: 494 GLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNEFGFMETPYRRVDP 553 Query: 707 EAPFVGTGMESVVAKSSGAAI----VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 E V ++ + A + A+ A VD I E + P + Sbjct: 554 ETGKVTAQIDYLTADEEDNYVVAQANARLADDGSFVDDNIIARFRGENTVVPRERLDYMD 613 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 K S +C+ + +D ++ +L+ P G Sbjct: 614 VSPKQVVSAATSCIP---------FLENDD--SNRALMGANMQRQAVPLLIPEAPLVGTG 662 Query: 823 FE-------DSMLISERMVSEDVFTSIHIEEFEVMARDTKL--GPEEITRDIPNVSEEGL 873 E + ++S+ + T+ I D K G + R + Sbjct: 663 MEHVSAKDSGAAIVSKHPGVVERVTAKEIWVRRTEEVDGKQVKGDLDKYRLQKFIRSNQG 722 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 + ++ I+ G + +IL + M +L + D + Sbjct: 723 TSYNQRPIVREGDVIEKREILADGPS-MESGEMALGRNVLVGFMTWDGYNYEDAII---- 777 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 +S +V ++ I++ E + E + RD + +N+ R I G Sbjct: 778 -LSERLVKDDVYTSVHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDER-GIIRVGA 835 Query: 994 NAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 G K T ++ R F + +V+ + Sbjct: 836 EVKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIV------L 889 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 KI + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMPFL Sbjct: 890 DVKIFNREDGDELPPGVNQLVRVYIVQKRKINQGDKMAGRHGNKGVISRILPEEDMPFLP 949 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D D+ Sbjct: 950 DGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARKLGIHVASPVFDGANEEDVWGTLEEAG 1009 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 DG Sbjct: 1010 MAR-----------------------------------DGKTV----------------- 1017 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 LYDG TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1018 --LYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQR 1075 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE Sbjct: 1076 FGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKE 1135 Query: 1354 MQALGLSIDLENSRTKNSAKME-EIPDFNKCE 1384 +Q+LG+ + + +S + E + D E Sbjct: 1136 LQSLGMDVKMLSSNEEEIEMRELDDEDEQTSE 1167 >gi|170293422|gb|ACB12764.1| DNA-directed RNA polymerase [Geobacillus stearothermophilus ATCC 7953] Length = 1074 Score = 864 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 440/948 (46%), Positives = 600/948 (63%), Gaps = 78/948 (8%) Query: 17 FGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEF 76 + + E++++P+LIE+Q +SY FL +EGL+ F+ + PI FSG LEF Sbjct: 1 YARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFREISPIEDFSGNLSLEF 50 Query: 77 VSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLP 136 + Y PK+ V++ RD+TYA PL++ +RLI K ++KEQ ++MGD P Sbjct: 51 IDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLI---------NKETGEVKEQDVFMGDFP 101 Query: 137 LMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEF 196 LMT+ GTF+I G +R++VSQL RSP +++ + +GK Y+ +IP++G W++ E Sbjct: 102 LMTETGTFIINGAERVIVSQLVRSPSVYYS---DKVDKNGKRGYSATVIPNRGAWLEYET 158 Query: 197 DSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLM 255 D+KD+++VRIDR RK+PVT L ALG S+ EI+ + + L+ Sbjct: 159 DAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLRNTLEKDNTDSTEKALI 218 Query: 256 VGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK--------GVKFLGITSDCLCGL 306 + GE +E+ K L + K + + L Sbjct: 219 ------EIYERLRPGEPPTLENAKNLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFNQ 272 Query: 307 YVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDK 366 +AE I++ ET E+ EAG +ID ++L + + + + Y V D Sbjct: 273 RLAETIIDPETKEVIAEAGAMIDRRTLNRLLPYLEKGVGL--------RTYRPAEGVADG 324 Query: 367 NKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPD 426 + + ++ P D +N+ N + Sbjct: 325 PIE-----VQTVKIYAPNDPDN------------------------EKVINIIGNGFIAE 355 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 DV+HI DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL RMER + Sbjct: 356 DVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVV 415 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 +ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N L+ +TH RRLSALG Sbjct: 416 RERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGP 475 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV- 605 GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A+VN +GFIETPYR+V Sbjct: 476 GGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKFGFIETPYRRVD 535 Query: 606 -CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 G+VT+ + YL+A EE+N +AQAN L EDG+F EE V R GE I+V R+++D++ Sbjct: 536 PETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVIARFRGENIVVKRDRVDYM 595 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ EAP VGTGME V AK SG Sbjct: 596 DVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGTGMEYVSAKDSG 655 Query: 725 AAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 AA++ K GIVE+V+A I +R +E D +D YRL+KF RSNQ TC NQRP+VK Sbjct: 656 AAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQGTCYNQRPIVK 715 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 GD V + +I+ADGPS D G+LALGRN+LVAFM W GYN+ED++++SER+V EDV+TSIH Sbjct: 716 KGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSIH 775 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 IEE+E +RDTKLGPEEITRDIPNV E+ LKN+DE GI+ +GAEV GD+LVGK+TPKG Sbjct: 776 IEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKGM 835 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR D Sbjct: 836 TELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGD 883 Score = 353 bits (906), Expect = 1e-94, Method: Composition-based stats. Identities = 147/458 (32%), Positives = 199/458 (43%), Gaps = 77/458 (16%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + V ++ I+ G V G+IL + + + +L A Sbjct: 689 GDLDKYRLLKFVRSNQGTCYNQRPIVKKGDIVEKGEILADGPS-MDKGELALGRNVLVAF 747 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 748 MTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKN 807 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R Sbjct: 808 LDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFGEKAR------------- 854 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E K+ + GD++PPGV ++V+V++ KR I GDKMA Sbjct: 855 ----EVRDTSLRVPHGGGGIVLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 910 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+FE HLG A LG Sbjct: 911 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 970 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I S + D D+ + T ++ Sbjct: 971 IASPVFDGATEEDVWNILEEAGLARDAK----------------------------TVLY 1002 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 DG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1003 DG--------------------------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1036 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1037 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1074 >gi|229159275|ref|ZP_04287299.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus R309803] gi|228624167|gb|EEK80969.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus R309803] Length = 1180 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 435/964 (45%), Positives = 595/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 331 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + D++HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 EGERVINVISNANITRDIKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L ++G F E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGLVTGQVDYLTADEEDNYVVAQANMKLSDEGEFLSEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ RE+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K G+VE+V+A + +R VE D +D Y++ KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 254/1174 (21%), Positives = 411/1174 (35%), Gaps = 134/1174 (11%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 98 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 158 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS----- 409 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ Sbjct: 217 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 276 Query: 410 ------TVGRVKMNMRL--NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGN 461 + N RL L P+ + E I + L + Sbjct: 277 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 336 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 G++ ++ E + + + I +++++ FF Sbjct: 337 MGGVVEGDVELQSIKIYAPESEGE-RVINVISNANITRDIKHITPGDILASISYFFNL-- 393 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIG 581 L ++ + + R R R V R+ +T+ Sbjct: 394 LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITPQA 449 Query: 582 LVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFT 641 L++ A + + + + ++ + Sbjct: 450 LINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KRRL 488 Query: 642 EELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQA 700 L E + + + I + + S + Sbjct: 489 SALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIETP 548 Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVD 760 + E V +G V A + S EG+ Sbjct: 549 YRRVDPETGLV-----------TGQVDYLTADEEDNYVVAQANMKLSDEGEFLSEDIVAR 597 Query: 761 IYRLMKFQRSNQNTCVNQRP--LVKVGDEVRRNDIIADGPSTDLGD---------LALGR 809 + ++ P +V D +G + Sbjct: 598 FRGENIVTNRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 657 Query: 810 NMLVAFMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPN 867 ++ M + + +I + +V + + + + T G + + Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 717 Query: 868 VSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDT 927 + ++ I+ VG EV G+IL + + +L + D Sbjct: 718 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDA 776 Query: 928 SLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLM 987 + +S +V ++ I++ E + E + RD + RN+ R Sbjct: 777 II-----MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-G 830 Query: 988 EILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKS 1047 I G G K T ++ R F + +V+ + Sbjct: 831 IIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII- 889 Query: 1048 ILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCE 1107 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP E Sbjct: 890 -----LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEE 944 Query: 1108 DMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISP 1167 DMP+L DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 945 DMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWG 1004 Query: 1168 LRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMAD 1227 T ++DG Sbjct: 1005 TIEEAGMANDAK----------------------------TILYDG-------------- 1022 Query: 1228 LDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1023 ------------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKA 1070 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF Sbjct: 1071 QFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESF 1130 Query: 1348 NVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 VL+KE+Q+LG+ + + +S + D + Sbjct: 1131 KVLIKELQSLGMDVKMMSSDDTEIEMRDTEDDDD 1164 >gi|229027950|ref|ZP_04184103.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH1271] gi|228733338|gb|EEL84167.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH1271] Length = 1180 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 436/964 (45%), Positives = 595/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 331 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L E+G F E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGLVTGQVDYLTADEEDNYVVAQANMKLSEEGEFLSEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K G+VE+V+A + +R VE D +D Y++ KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 183/568 (32%), Positives = 263/568 (46%), Gaps = 69/568 (12%) Query: 816 MPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 M + + +I + +V + + + + T G + + + Sbjct: 664 MEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQG 723 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 ++ I+ VG EV G+IL + + +L + D + Sbjct: 724 TCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII---- 778 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 779 -MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVGA 836 Query: 994 NAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 G K T ++ R F + +V+ + Sbjct: 837 EVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------L 890 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L Sbjct: 891 DVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLP 950 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 951 DGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEAG 1010 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 T ++DG Sbjct: 1011 MANDAK----------------------------TILYDG-------------------- 1022 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1023 ------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQR 1076 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE Sbjct: 1077 FGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKE 1136 Query: 1354 MQALGLSIDLENSRTKNSAKMEEIPDFN 1381 +Q+LG+ + + +S K + D + Sbjct: 1137 LQSLGMDVKMMSSDDKEIEMRDTEDDDD 1164 >gi|118475871|ref|YP_893022.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis str. Al Hakam] gi|228912841|ref|ZP_04076488.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925355|ref|ZP_04088451.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931604|ref|ZP_04094510.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943908|ref|ZP_04106293.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228983357|ref|ZP_04143570.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089233|ref|ZP_04220514.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock3-42] gi|229119764|ref|ZP_04249025.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus 95/8201] gi|229136948|ref|ZP_04265575.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus BDRD-ST26] gi|229182496|ref|ZP_04309747.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus BGSC 6E1] gi|229194492|ref|ZP_04321295.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus m1293] gi|118415096|gb|ABK83515.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis str. Al Hakam] gi|228588958|gb|EEK46973.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus m1293] gi|228600951|gb|EEK58520.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus BGSC 6E1] gi|228646486|gb|EEL02693.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus BDRD-ST26] gi|228663665|gb|EEL19244.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus 95/8201] gi|228694072|gb|EEL47754.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock3-42] gi|228776347|gb|EEM24700.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228815741|gb|EEM61977.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828032|gb|EEM73760.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834277|gb|EEM79818.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846777|gb|EEM91782.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1180 Score = 863 bits (2229), Expect = 0.0, Method: Composition-based stats. Identities = 437/964 (45%), Positives = 596/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 331 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L E+G F +E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K GIVE+V+A + +R VE D +D Y++ KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 265/1169 (22%), Positives = 436/1169 (37%), Gaps = 124/1169 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 98 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 158 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 217 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 276 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + A IL + N+G + + Sbjct: 277 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 336 Query: 467 VGEMLKNQYRLGLLRM-------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 +G +++ L +++ ER I ++ V I +++++ FF Sbjct: 337 MGGVVEGDVELQSIKIYAPESEGERVINVIGNANITRDV---KHITPGDILASISYFFNL 393 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L ++ + + R R R V R+ +T+ Sbjct: 394 --LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITP 447 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 L++ A + + + + ++ + Sbjct: 448 QALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KR 486 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQR 698 L E + + + I + + S + Sbjct: 487 RLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIE 546 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVA----KRAGIVEQVDAIRIVIRSVEGDLDP 754 + E V ++ + A +VA K + E +D + E + Sbjct: 547 TPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVARFRGENIVTN 606 Query: 755 STSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVA 814 + K S C+ D+ R + A+ + + ++ Sbjct: 607 KERIDYMDVSPKQVVSAATACIPFL----ENDDSNRALMGANMQRQAVPLMNPESPIVGT 662 Query: 815 FMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 M + + +I + +V + + + + T G + + + Sbjct: 663 GMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQ 722 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 ++ I+ VG EV G+IL + + +L + D + Sbjct: 723 GTCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII--- 778 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 779 --MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVG 835 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 G K T ++ R F + +V+ + Sbjct: 836 AEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------ 889 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L Sbjct: 890 LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYL 949 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 950 PDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEA 1009 Query: 1173 EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG 1232 T ++DG Sbjct: 1010 GMANDAK----------------------------TILYDG------------------- 1022 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQ Sbjct: 1023 -------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQ 1075 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+K Sbjct: 1076 RFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIK 1135 Query: 1353 EMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 E+Q+LG+ + + +S + D + Sbjct: 1136 ELQSLGMDVKMMSSDDTEIEMRDTEDDDD 1164 >gi|228919052|ref|ZP_04082431.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228937404|ref|ZP_04100050.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228950650|ref|ZP_04112784.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228970290|ref|ZP_04130949.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976860|ref|ZP_04137272.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis Bt407] gi|229067867|ref|ZP_04201184.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus F65185] gi|229107788|ref|ZP_04237424.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock1-15] gi|229125619|ref|ZP_04254651.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus BDRD-Cer4] gi|229142908|ref|ZP_04271349.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus BDRD-ST24] gi|229148511|ref|ZP_04276767.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus m1550] gi|229176702|ref|ZP_04304106.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus 172560W] gi|229188387|ref|ZP_04315435.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus ATCC 10876] gi|228595061|gb|EEK52832.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus ATCC 10876] gi|228606745|gb|EEK64162.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus 172560W] gi|228634927|gb|EEK91500.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus m1550] gi|228640529|gb|EEK96918.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus BDRD-ST24] gi|228657811|gb|EEL13617.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus BDRD-Cer4] gi|228675637|gb|EEL30845.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus Rock1-15] gi|228715226|gb|EEL67085.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus F65185] gi|228782830|gb|EEM30996.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis Bt407] gi|228789399|gb|EEM37319.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228809001|gb|EEM55486.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228822237|gb|EEM68219.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228840577|gb|EEM85839.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1180 Score = 863 bits (2229), Expect = 0.0, Method: Composition-based stats. Identities = 436/964 (45%), Positives = 595/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 331 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L ++G F E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSDEGEFLSEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ RE+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K G+VE+V+A + +R VE D +D Y++ KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 262/1176 (22%), Positives = 429/1176 (36%), Gaps = 138/1176 (11%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 98 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 158 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 217 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 276 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + A IL + N+G + + Sbjct: 277 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 336 Query: 467 VGEMLKNQYRLGLLRM-------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 +G +++ L +++ ER I ++ V I +++++ FF Sbjct: 337 MGGVVEGDVELQSIKIYAPESEGERVINVIGNANITRDV---KHITPGDILASISYFFNL 393 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L ++ + + R R R V R+ +T+ Sbjct: 394 --LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITP 447 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 L++ A + + + + ++ + Sbjct: 448 QALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KR 486 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQR 698 L E + + + I + + S + Sbjct: 487 RLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIE 546 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG 758 + E V ++ + A V A + S EG+ Sbjct: 547 TPYRRVDPETGLVTGHVDYLTA-----------DEEDNYVVAQANMKLSDEGEFLSEDIV 595 Query: 759 VDIYRLMKFQRSNQNTCVNQRP--LVKVGDEVRRNDIIADGPSTDLGD---------LAL 807 + ++ P +V D +G + Sbjct: 596 ARFRGENIVTNRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNP 655 Query: 808 GRNMLVAFMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDI 865 ++ M + + +I + +V + + + + T G + + Sbjct: 656 ESPIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQ 715 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 + ++ I+ VG EV G+IL + + +L + Sbjct: 716 KFIRSNQGTCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYE 774 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSR 985 D + +S +V ++ I++ E + E + RD + RN+ R Sbjct: 775 DAII-----MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER 829 Query: 986 LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 I G G K T ++ R F + +V+ + Sbjct: 830 -GIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGI 888 Query: 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILP 1105 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP Sbjct: 889 I------LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILP 942 Query: 1106 CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI 1165 EDMP+L DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 943 EEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDV 1002 Query: 1166 SPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225 T ++DG Sbjct: 1003 WGTIEEAGMANDAK----------------------------TILYDG------------ 1022 Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGG Sbjct: 1023 --------------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGG 1068 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PE Sbjct: 1069 KAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPE 1128 Query: 1346 SFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 SF VL+KE+Q+LG+ + + +S + D + Sbjct: 1129 SFKVLIKELQSLGMDVKMMSSDDTEIEMRDTEDDDD 1164 >gi|299821074|ref|ZP_07052962.1| DNA-directed RNA polymerase subunit beta [Listeria grayi DSM 20601] gi|299816739|gb|EFI83975.1| DNA-directed RNA polymerase subunit beta [Listeria grayi DSM 20601] Length = 1181 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 444/964 (46%), Positives = 604/964 (62%), Gaps = 80/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M+ V G R R+ + + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 1 MSGHDVKYGRHRTRRSYARISEVLELPNLIEIQTASYQWFL----------DEGLREMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y+ PK+ V++ RD YA PL++ LRLI K Sbjct: 51 DISPIEDFAGNLSLEFIDYDLGEPKYSVEESKSRDANYAAPLRVKLRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD PLMT+ GTF+I G +R++VSQL RSPG++F+ + +G+ + Sbjct: 102 ETGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFN---DKIDKNGRTGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD++HVRIDR RK+PVT L ALG S+ +I+ Sbjct: 159 GSTVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQDIIELVGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ + L K Sbjct: 219 NTLEKDNTDNAEKALL------EIYERLRPGEPPTVENARNLLISRFFDPKRYDLASVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI GD++D ++L++I IP L Sbjct: 273 YKINKKLHLKNRLFNQRLAETLVDPETGEIIASKGDILDRRALDQI-------IPNLESG 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N ++ D ++ ++ P D Sbjct: 326 VGFRTLHPSNGIMDDSV------VVQSIKIYAPND------------------------- 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N +DV+HI DI++ I +L +G G DDID+LGNRR+RSVGE+ Sbjct: 355 -EEKEINIIGNAYIEEDVKHITPSDIVSSISYFFNLLHGVGDTDDIDHLGNRRLRSVGEL 413 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D+ ++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 414 LQNQFRIGLSRMERVVRERMSIQDMSTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 473 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 474 PLGELTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 533 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A EE+N +AQANS LD+DGSF EE V R Sbjct: 534 KVNKFGFIETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDDDGSFAEEEVMAR 593 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +E++D++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 594 FRSENLAVTKERVDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEA 653 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V AK SGAAI AK GIVE V+A I IR + D T G+D Y L KF Sbjct: 654 PFVGTGMEHVSAKDSGAAITAKYDGIVEHVEAKEIWIRRVSDVDGTEVTGGIDKYTLRKF 713 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP V GD V + +I+A+GPS D G+LALGRN+LVAFM W GYN+ED++ Sbjct: 714 VRSNQGTCYNQRPNVAEGDRVVKGEILANGPSMDSGELALGRNVLVAFMTWDGYNYEDAI 773 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEEFE ARDTKLGPEE+TRDIPNV E+ L+++DE GII VGAE Sbjct: 774 IMSERLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAE 833 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V D+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV+IF R Sbjct: 834 VKDNDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTR 893 Query: 948 HGID 951 D Sbjct: 894 EAGD 897 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 249/1048 (23%), Positives = 397/1048 (37%), Gaps = 114/1048 (10%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 ++ V +N Y+RNTL D + + ALL+IY +RPG+ T A ++ FFD +YDL Sbjct: 208 IELVGDNEYLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVENARNLLISRFFDPKRYDL 267 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 ++VGR K+N +L+L + + + LVD G+ D L R + + Sbjct: 268 ASVGRYKINKKLHLK--------NRLFNQRLAETLVDPETGEIIASKGDILDRRALDQII 319 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 L++ +G + S SV + S+ + + ++ + + + + Sbjct: 320 PNLES--GVGFRTLHPSNGIMDDSVVVQSIKIYAPNDEEKEINIIGNAYIEEDVKHITPS 377 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 S L +G +R V + + + S+ Sbjct: 378 DIVSSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQD 437 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 + + I R V + + + L Sbjct: 438 MSTITPQQLI--NIRPVVASIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGG 491 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 E + + + I + + S + + E Sbjct: 492 LTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNKFGFIETPYRRVDPE 551 Query: 708 APFVGTGMESVVA--KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 V ++ + A + + A + A V+ + T Y + Sbjct: 552 TNRVTDKIDYLTADEEDNYVVAQANSKLDDDGSFAEEEVMARFRSENLAVTKERVDYMDV 611 Query: 766 KFQR--SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 ++ S C+ + +D ++ A+ A G Sbjct: 612 SPKQVVSVATACIP---------FLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEH 662 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDTKL-------GPEEITRDIPNVSEEGLKNI 876 + + ++ H+E E+ R G + V Sbjct: 663 VSAKDSGAAITAKYDGIVEHVEAKEIWIRRVSDVDGTEVTGGIDKYTLRKFVRSNQGTCY 722 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 ++ + G V G+IL + + +L A + D + Sbjct: 723 NQRPNVAEGDRVVKGEILANGPS-MDSGELALGRNVLVAFMTWDGYNYEDAIIM----SE 777 Query: 937 GTVVDVRIFNRHGIDKNERSISVE---REQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 V D + H + + + E + +D LD R+ + Sbjct: 778 RLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDN 837 Query: 994 NAVSGPKGFKKSTVLSSD--LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILED 1051 + + G K T L+++ L+ + + +V + Sbjct: 838 DLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIV------------ 885 Query: 1052 RFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPF 1111 KI + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMPF Sbjct: 886 -LDVKIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPF 944 Query: 1112 LKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSF 1171 + DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 945 MPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEE 1004 Query: 1172 LEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES 1231 T ++DG Sbjct: 1005 AGMARDAK----------------------------TILYDG------------------ 1018 Query: 1232 GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGG 1291 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GG Sbjct: 1019 --------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGG 1070 Query: 1292 QRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLV 1351 QR GEMEVW ++AYGAAY LQE+LTIKSDDVVGR + YE+IV G + G PESF VL+ Sbjct: 1071 QRFGEMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPQPGVPESFKVLI 1130 Query: 1352 KEMQALGLSIDLENSRTKNSAKMEEIPD 1379 KE+Q+LG+ + + ++ + + D Sbjct: 1131 KELQSLGMDVKILSADEEEIEFRDLDDD 1158 >gi|65317559|ref|ZP_00390518.1| COG0085: DNA-directed RNA polymerase, beta subunit/140 kD subunit [Bacillus anthracis str. A2012] Length = 1180 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 438/964 (45%), Positives = 596/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 331 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L E+G F +E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K GIVE+V+A + +R VE D +D Y++ KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 264/1169 (22%), Positives = 436/1169 (37%), Gaps = 124/1169 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 98 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 158 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 217 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 276 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + A IL + N+G + + Sbjct: 277 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 336 Query: 467 VGEMLKNQYRLGLLRM-------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 +G +++ L +++ ER I ++ V I +++++ FF Sbjct: 337 MGGVVEGDVELQSIKIYAPESEGERVINVIGNANITRDV---KHITPGDILASISYFFNL 393 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L ++ + + R R R V R+ +T+ Sbjct: 394 --LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITP 447 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 L++ A + + + + ++ + Sbjct: 448 QALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTH---------------------KR 486 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQR 698 L E + + + I + + S + Sbjct: 487 RLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIE 546 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVA----KRAGIVEQVDAIRIVIRSVEGDLDP 754 + E V ++ + A +VA K + E +D + E + Sbjct: 547 TPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVARFRGENIVTN 606 Query: 755 STSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVA 814 + K S C+ D+ R + A+ + + ++ Sbjct: 607 KERIDYMDVSPKQVVSAATACIPFL----ENDDSNRALMGANMQRQAVPLMNPESPIVGT 662 Query: 815 FMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 M + + +I + +V + + + + T G + + + Sbjct: 663 GMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQ 722 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 ++ I+ VG EV G+IL + + +L + D + Sbjct: 723 GTCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII--- 778 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 779 --MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVG 835 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 G K T ++ R F + +V+ + Sbjct: 836 AEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------ 889 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L Sbjct: 890 LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYL 949 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 950 PDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEA 1009 Query: 1173 EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG 1232 T ++DG Sbjct: 1010 GMANDAK----------------------------TILYDG------------------- 1022 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQ Sbjct: 1023 -------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQ 1075 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAAY LQE+LT+KSDDV+GR + YE+IV G + E G PESF VL+K Sbjct: 1076 RFGEMEVWALEAYGAAYTLQEILTVKSDDVIGRVKTYEAIVKGENVPEPGVPESFKVLIK 1135 Query: 1353 EMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 E+Q+LG+ + + +S + D + Sbjct: 1136 ELQSLGMDVKMMSSDDTEIEMRDTEDDDD 1164 >gi|228956543|ref|ZP_04118339.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803108|gb|EEM49930.1| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis serovar pakistani str. T13001] Length = 1180 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 437/964 (45%), Positives = 595/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 331 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L ++G F E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSDEGEFLSEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ RE+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K GIVE+V+A + +R VE D +D Y++ KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 262/1176 (22%), Positives = 429/1176 (36%), Gaps = 138/1176 (11%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 98 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 158 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 217 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 276 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + A IL + N+G + + Sbjct: 277 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 336 Query: 467 VGEMLKNQYRLGLLRM-------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 +G +++ L +++ ER I ++ V I +++++ FF Sbjct: 337 MGGVVEGDVELQSIKIYAPESEGERVINVIGNANITRDV---KHITPGDILASISYFFNL 393 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L ++ + + R R R V R+ +T+ Sbjct: 394 --LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITP 447 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 L++ A + + + + ++ + Sbjct: 448 QALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KR 486 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQR 698 L E + + + I + + S + Sbjct: 487 RLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIE 546 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG 758 + E V ++ + A V A + S EG+ Sbjct: 547 TPYRRVDPETGLVTGHVDYLTA-----------DEEDNYVVAQANMKLSDEGEFLSEDIV 595 Query: 759 VDIYRLMKFQRSNQNTCVNQRP--LVKVGDEVRRNDIIADGPSTDLGD---------LAL 807 + ++ P +V D +G + Sbjct: 596 ARFRGENIVTNRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNP 655 Query: 808 GRNMLVAFMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDI 865 ++ M + + +I + +V + + + + T G + + Sbjct: 656 ESPIVGTGMEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQ 715 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 + ++ I+ VG EV G+IL + + +L + Sbjct: 716 KFIRSNQGTCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYE 774 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSR 985 D + +S +V ++ I++ E + E + RD + RN+ R Sbjct: 775 DAII-----MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER 829 Query: 986 LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 I G G K T ++ R F + +V+ + Sbjct: 830 -GIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGI 888 Query: 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILP 1105 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP Sbjct: 889 I------LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILP 942 Query: 1106 CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI 1165 EDMP+L DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 943 EEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDV 1002 Query: 1166 SPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225 T ++DG Sbjct: 1003 WGTIEEAGMANDAK----------------------------TILYDG------------ 1022 Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGG Sbjct: 1023 --------------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGG 1068 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PE Sbjct: 1069 KAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPE 1128 Query: 1346 SFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 SF VL+KE+Q+LG+ + + +S + D + Sbjct: 1129 SFKVLIKELQSLGMDVKMMSSDDTEIEMRDTEDDDD 1164 >gi|229041007|ref|ZP_04189770.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH676] gi|228727304|gb|EEL78498.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH676] Length = 1180 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 436/964 (45%), Positives = 595/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 331 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 EGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L ++G F E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSDEGEFLSEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ RE+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K G+VE+V+A + +R VE D +D Y++ KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQIVKGDLDRYKMQKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 261/1176 (22%), Positives = 428/1176 (36%), Gaps = 138/1176 (11%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 98 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 158 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 217 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 276 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + A IL + N+G + + Sbjct: 277 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 336 Query: 467 VGEMLKNQYRLGLLRM-------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 +G +++ L +++ ER I ++ V I +++++ FF Sbjct: 337 MGGVVEGDVELQSIKIYAPESEGERVINVIGNANITRDV---KHITPGDILASISYFFNL 393 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L ++ + + R R R V R+ +T+ Sbjct: 394 --LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITP 447 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 L++ A + + + + ++ + Sbjct: 448 QALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KR 486 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQR 698 L E + + + I + + S + Sbjct: 487 RLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIE 546 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG 758 + E V ++ + A V A + S EG+ Sbjct: 547 TPYRRVDPETGLVTGHVDYLTA-----------DEEDNYVVAQANMKLSDEGEFLSEDIV 595 Query: 759 VDIYRLMKFQRSNQNTCVNQRP--LVKVGDEVRRNDIIADGPSTDLGD---------LAL 807 + ++ P +V D +G + Sbjct: 596 ARFRGENIVTNRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNP 655 Query: 808 GRNMLVAFMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDI 865 ++ M + + +I + +V + + + + G + + Sbjct: 656 ESPIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREVWVRRYVEVDGQIVKGDLDRYKMQ 715 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 + ++ I+ VG EV G+IL + + +L + Sbjct: 716 KFIRSNQGTCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYE 774 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSR 985 D + +S +V ++ I++ E + E + RD + RN+ R Sbjct: 775 DAII-----MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER 829 Query: 986 LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 I G G K T ++ R F + +V+ + Sbjct: 830 -GIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGI 888 Query: 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILP 1105 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP Sbjct: 889 I------LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILP 942 Query: 1106 CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI 1165 EDMP+L DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 943 EEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDV 1002 Query: 1166 SPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225 T ++DG Sbjct: 1003 WGTIEEAGMANDAK----------------------------TILYDG------------ 1022 Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGG Sbjct: 1023 --------------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGG 1068 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PE Sbjct: 1069 KAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPE 1128 Query: 1346 SFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 SF VL+KE+Q+LG+ + + +S + D + Sbjct: 1129 SFKVLIKELQSLGMDVKMMSSDDTEIEMRDTEDDDD 1164 >gi|172056132|ref|YP_001812592.1| DNA-directed RNA polymerase subunit beta [Exiguobacterium sibiricum 255-15] gi|171988653|gb|ACB59575.1| DNA-directed RNA polymerase, beta subunit [Exiguobacterium sibiricum 255-15] Length = 1185 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 435/1015 (42%), Positives = 618/1015 (60%), Gaps = 78/1015 (7%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q SY+ FL EGL+ F Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTNSYEWFLR----------EGLREMFH 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI+ F+G +LEF+ Y PK+ +D+ RD+TY+ PL++ +RL K Sbjct: 51 DISPISDFTGNLVLEFIDYSLGEPKYSIDESKERDVTYSAPLRVKVRL---------QNK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP +++++ + +GK + Sbjct: 102 ETGELKEQEVFMGDFPLMTESGTFIINGAERVIVSQLVRSPSVYYNNKLDK---NGKRGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 + +IP++G W+++E D+KDI++VRIDR RK+PVT L ALG ++ EI+ Sbjct: 159 SATVIPNRGAWLELETDAKDIVYVRIDRTRKIPVTVLLRALGFGTDQEIIDLLGDDEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 219 NSLEKDNTETTEKALI------EIYERLRPGEPPTVENAKALLVSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L G +AE +V+ ETGE+ E G V+D + L+++ + + Sbjct: 273 CKINKKLHLKNRLFGQKLAETLVDPETGEVIAEEGTVLDRRMLDKVLPFLEGSVGYI--- 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 T + L +V P D Sbjct: 330 ---------EATPTGGVTQGEAFNLQSIKVFAPDD------------------------A 356 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + D++HI D+IA I +L + GT DDID+LGNRR+RSVGE+ Sbjct: 357 EGERIINIIGNGNIDRDIKHITPADMIAAINYFFNLLHEVGTTDDIDHLGNRRLRSVGEL 416 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER +KER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 417 LQNQFRIGLSRMERVVKERMSIQDQNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 476 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HY R+CP ET EG NIGL++SL+SFA Sbjct: 477 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYSRMCPIETPEGPNIGLINSLSSFA 536 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN YGFIE PYR+V G VTN++ Y++A EE+ +AQAN L E+ +F + V R Sbjct: 537 KVNEYGFIEAPYRRVDPETGVVTNEIHYMTADEEDLYVVAQANMLLTEEKTFQDTHVLSR 596 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G+ + V ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL E+ Sbjct: 597 FRGQNLSVEPARVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLDPES 656 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA+VAK +GI E+V A I++R + E D + +D Y++ KF Sbjct: 657 PIVGTGMEYVSAKDSGAAVVAKHSGIAERVTAREILVRRTTEVDGNIVQGELDRYKIQKF 716 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQ+P++KVGD V + +I+ADGPS D G+LALGRN+LV FM W GYN+ED++ Sbjct: 717 IRSNQGTCYNQKPIIKVGDPVDKGEILADGPSMDGGELALGRNVLVGFMTWDGYNYEDAV 776 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E +RDTKLGPEEITRDIPNV ++ LKN+D+ GII VGAE Sbjct: 777 IMSERLVKDDVYTSIHIEEYECESRDTKLGPEEITRDIPNVGDDALKNLDDRGIIRVGAE 836 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV+IF+R Sbjct: 837 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGDGIILDVKIFDR 896 Query: 948 -HGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG 1001 +G + + + R I + + +++ + IL ++ P G Sbjct: 897 DNGDELSPGVNQLIRAYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYMPDG 951 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 258/1174 (21%), Positives = 437/1174 (37%), Gaps = 136/1174 (11%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + S I+ E+VI S + + + K Sbjct: 95 KVRLQNKETGELKEQEVFMGDFPLMTESGTFIINGAERVIVSQLVRSPSVYYNNKLDKNG 154 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G ++ + ++ +Y+ + + +D + + Sbjct: 155 KRGFSATVIPNRGAWLELETDAKDIVYVRIDRTRKIPVTVLLRALGFGTDQEI-IDLLGD 213 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 + Y+RN+L D + + AL++IY +RPG+ T A+++ FFD +YDL+ VGR Sbjct: 214 DEYLRNSLEKDNTETTEKALIEIYERLRPGEPPTVENAKALLVSRFFDPKRYDLANVGRC 273 Query: 415 KMNMRLNLD-------------TPDDVRHIRKEDIIAIIKILVD----LRNGKGTIDDID 457 K+N +L+L P+ I +E + ++L L G I+ Sbjct: 274 KINKKLHLKNRLFGQKLAETLVDPETGEVIAEEGTVLDRRMLDKVLPFLEGSVGYIEATP 333 Query: 458 NLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFF 517 G + + + ER I + + + ++ Sbjct: 334 TGGVTQGEAFNLQSIKVFAPDDAEGERIINIIGNGNIDRDIKHITPADMIAAINYFFNLL 393 Query: 518 CSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEG 577 + +H+ + + L + G++R V+ R A + Sbjct: 394 HEVGTTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMSIQDQNAITPQALINIR 453 Query: 578 HNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDED 637 I + ++++ + TN + L+ Sbjct: 454 PVIASIKEFFGSSQLSQF------------MDQTNPLAELT------------------H 483 Query: 638 GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNM 696 L E + + S + I + + S + Sbjct: 484 KRRLSALGPGGLTRERAGFEVRDVHYSHYSRMCPIETPEGPNIGLINSLSSFAKVNEYGF 543 Query: 697 QRQAVPLLKAEAPFVGTGMESVVA--KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDP 754 + E V + + A + A E+ V+ G Sbjct: 544 IEAPYRRVDPETGVVTNEIHYMTADEEDLYVVAQANMLLTEEKTFQDTHVLSRFRGQNLS 603 Query: 755 STSGVDIYRLMKFQR--SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNML 812 Y + ++ S C+ + +D ++ A+ Sbjct: 604 VEPARVDYMDVSPKQVVSAATACIP---------FLENDDSNRALMGANMQRQAVPLLDP 654 Query: 813 VAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL-------GPEEITRDI 865 + + G + + +V++ + + E++ R T G + + Sbjct: 655 ESPIVGTGMEYVSAKDSGAAVVAKHSGIAERVTAREILVRRTTEVDGNIVQGELDRYKIQ 714 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 + ++ II VG V+ G+IL + + +L + Sbjct: 715 KFIRSNQGTCYNQKPIIKVGDPVDKGEILADGPS-MDGGELALGRNVLVGFMTWDGYNYE 773 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSR 985 D + +S +V ++ I++ E + E + RD + +N+ R Sbjct: 774 DAVI-----MSERLVKDDVYTSIHIEEYECESRDTKLGPEEITRDIPNVGDDALKNLDDR 828 Query: 986 LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 I G G K T ++ R F + +V+ + + Sbjct: 829 -GIIRVGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGDGI 887 Query: 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILP 1105 KI GD++ PGV ++++ ++ KR I GDKMAGRHGNKG++SRILP Sbjct: 888 I------LDVKIFDRDNGDELSPGVNQLIRAYIVQKRKIHEGDKMAGRHGNKGVISRILP 941 Query: 1106 CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI 1165 EDMP++ DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG K+ S + D D+ Sbjct: 942 EEDMPYMPDGTPIDIMLNPLGVPSRMNIGQLLELHLGMAARQLGIKVASPVFDGAREEDV 1001 Query: 1166 SPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225 A E Sbjct: 1002 W-----------------------------------------------ATIEE------- 1007 Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 A +D ++ILYDG +GE FD ++VG +YM+KL HMV DK++ARSTG YSLVTQQPLGG Sbjct: 1008 AGMDRDAKTILYDGRSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGG 1067 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGAAY LQE+LTIKSDD +GR + YE+IV G + + G PE Sbjct: 1068 KAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDDTIGRVKAYEAIVKGENVPQPGVPE 1127 Query: 1346 SFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 SF VL+KE+Q+LG+ + + ++ + ++ D Sbjct: 1128 SFRVLIKELQSLGMDVKMMSAEDEEIEMKDDDED 1161 >gi|295702342|ref|YP_003595417.1| DNA-directed RNA polymerase subunit beta [Bacillus megaterium DSM 319] gi|294800001|gb|ADF37067.1| DNA-directed RNA polymerase, beta subunit [Bacillus megaterium DSM 319] Length = 1187 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 433/964 (44%), Positives = 595/964 (61%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTASYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V + RD+TYA PL++ +RLI K Sbjct: 51 DISPIDDFTGNLSLEFIDYSLGEPKYSVGESKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK Y Sbjct: 102 ETGEVKDQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKLDKNGKKGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNEYIR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 219 NTLEKDNTETTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +V+ ETGEI E G +ID + L+ + Sbjct: 273 YKINKKLHIKHRLFNQKLAETLVDPETGEIIAEKGAMIDRRLLDRLI------------- 319 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + T D L ++ P D Sbjct: 320 PMLEGGVNFKTYSPVGGVVEDDVTLQSIKIYAPNDP------------------------ 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G + + N ++V++I DI+A I +L + G DDID+LGNRR+RSVGE+ Sbjct: 356 EGEKIITVSGNAYVTEEVKNITPADILASISYFFNLLHQVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 476 PLGELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR++ GKVT + YL+A EE+N +AQAN+ L +DGSF +E V R Sbjct: 536 KVNKFGFIETPYRRIDPETGKVTERIDYLTADEEDNYVVAQANARLGDDGSFLDENVVAR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE ++ R+++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL EA Sbjct: 596 FRGENTVIRRDRLDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLNPEA 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V K SGAA++ K G+VE+V+A +I +R E D +D Y+L+KF Sbjct: 656 PIVGTGMEYVSGKDSGAAVICKYPGVVERVEAKQIFVRRYEEVDGQKVKGNLDQYKLLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGDEV + +I+ADGPS + G+LALGRN++V FM W GYN+ED++ Sbjct: 716 VRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TS+HIEE+E +RDTKLGPEEITRDIPNV E+ L+N+DE GII +GAE Sbjct: 776 IMSERLVKDDVYTSVHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 836 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 184/575 (32%), Positives = 269/575 (46%), Gaps = 79/575 (13%) Query: 816 MPWHGYNFEDSMLISER--MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 M + + +I + +V I + +E + G + + + V Sbjct: 662 MEYVSGKDSGAAVICKYPGVVERVEAKQIFVRRYEEVDGQKVKGNLDQYKLLKFVRSNQG 721 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 ++ I+ VG EV G+IL + + + ++ + D + Sbjct: 722 TCYNQRPIVSVGDEVVKGEILADGPS-MEKGELALGRNVMVGFMTWDGYNYEDAIIMSER 780 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLME 988 V V + + + + E I + D DE+ I+ + + Sbjct: 781 LVKDDVYTSVHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGD 840 Query: 989 ILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSI 1048 +L G+ G L + E R +++ + Sbjct: 841 LLVGKVTPKGVTELTAEERLLHAIFGEKARE-VRDTSLRVPHGGGGI------------- 886 Query: 1049 LEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCED 1108 K+ + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP ED Sbjct: 887 ---ILDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISRILPEED 943 Query: 1109 MPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPL 1168 MP+L DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D D+ Sbjct: 944 MPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARKLGIHVASPVFDGAREEDVW-- 1001 Query: 1169 RSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADL 1228 A E A + Sbjct: 1002 ---------------------------------------------ATIEE-------AGM 1009 Query: 1229 DESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 +++LYDG TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1010 SRDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQ 1069 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF Sbjct: 1070 FGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGIPESFK 1129 Query: 1349 VLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKC 1383 VL+KE+Q+LG+ + + ++ + M+ D + Sbjct: 1130 VLIKELQSLGMDVKMLSADEQEIDIMDSEEDHEQP 1164 >gi|294496975|ref|YP_003560675.1| DNA-directed RNA polymerase subunit beta [Bacillus megaterium QM B1551] gi|294346912|gb|ADE67241.1| DNA-directed RNA polymerase, beta subunit [Bacillus megaterium QM B1551] Length = 1187 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 433/964 (44%), Positives = 596/964 (61%), Gaps = 78/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTASYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ V + RD+TYA PL++ +RLI K Sbjct: 51 DISPIDDFTGNLSLEFIDYSLGEPKYSVGESKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK Y Sbjct: 102 ETGEVKDQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKLDKNGKKGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNEYIR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 219 NTLEKDNTETTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 272 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +V+ ETGEI E G +ID + L+ + Sbjct: 273 YKINKKLHIKHRLFNQKLAETLVDPETGEIIAEKGAMIDRRLLDRLI------------- 319 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + T D L ++ P D Sbjct: 320 PMLEGGVNFKTYSPVGGVVEDDVTLQSIKIYAPNDP------------------------ 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G + + N ++V++I DI+A I +L + G DDID+LGNRR+RSVGE+ Sbjct: 356 EGEKIITVSGNAYVTEEVKNITPADILASISYFFNLLHQVGDTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 476 PLGELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR++ GKVT + YL+A EE+N +AQAN+ L +DGSF +E V R Sbjct: 536 KVNKFGFIETPYRRIDPETGKVTERIDYLTADEEDNYVVAQANARLGDDGSFLDENVVAR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE ++ R+++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL EA Sbjct: 596 FRGENTVIRRDRLDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLNPEA 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V K SGAA++ K G+VE+V+A +I++R E D +D Y+L+KF Sbjct: 656 PIVGTGMEYVSGKDSGAAVICKYPGVVERVEAKQIIVRRYEEVDGQKVKGNLDQYKLLKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VGDEV + +I+ADGPS + G+LALGRN++V FM W GYN+ED++ Sbjct: 716 VRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TS+HIEE+E +RDTKLGPEEITRDIPNV E+ L+N+DE GII +GAE Sbjct: 776 IMSERLVKDDVYTSVHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 836 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 895 Query: 948 HGID 951 D Sbjct: 896 EDGD 899 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 184/575 (32%), Positives = 269/575 (46%), Gaps = 79/575 (13%) Query: 816 MPWHGYNFEDSMLISER--MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 M + + +I + +V I + +E + G + + + V Sbjct: 662 MEYVSGKDSGAAVICKYPGVVERVEAKQIIVRRYEEVDGQKVKGNLDQYKLLKFVRSNQG 721 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 ++ I+ VG EV G+IL + + + ++ + D + Sbjct: 722 TCYNQRPIVSVGDEVVKGEILADGPS-MEKGELALGRNVMVGFMTWDGYNYEDAIIMSER 780 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLME 988 V V + + + + E I + D DE+ I+ + + Sbjct: 781 LVKDDVYTSVHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGD 840 Query: 989 ILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSI 1048 +L G+ G L + E R +++ + Sbjct: 841 LLVGKVTPKGVTELTAEERLLHAIFGEKARE-VRDTSLRVPHGGGGI------------- 886 Query: 1049 LEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCED 1108 K+ + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP ED Sbjct: 887 ---ILDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISRILPEED 943 Query: 1109 MPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPL 1168 MP+L DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D D+ Sbjct: 944 MPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARKLGIHVASPVFDGAREEDVW-- 1001 Query: 1169 RSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADL 1228 A E A + Sbjct: 1002 ---------------------------------------------ATIEE-------AGM 1009 Query: 1229 DESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 +++LYDG TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1010 SRDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQ 1069 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF Sbjct: 1070 FGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGIPESFK 1129 Query: 1349 VLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKC 1383 VL+KE+Q+LG+ + + ++ + M+ D + Sbjct: 1130 VLIKELQSLGMDVKMLSADEQEIDIMDSEEDHEQP 1164 >gi|229015504|ref|ZP_04172502.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH1273] gi|229021713|ref|ZP_04178295.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH1272] gi|228739581|gb|EEL89995.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH1272] gi|228745791|gb|EEL95795.1| DNA-directed RNA polymerase subunit beta [Bacillus cereus AH1273] Length = 1180 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 437/964 (45%), Positives = 596/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ Sbjct: 4 LTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQ 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+C RD+TYA PL++ +RLI K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ G+ +GK + Sbjct: 105 ETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYS---GKVDKNGKRGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI S Sbjct: 162 TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLS 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + L+ + GE +E+ K L K Sbjct: 222 NTLEKDNTDSTEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGR 275 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI G ++D ++L+ I ++I Sbjct: 276 YKINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIG----- 330 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + Y + Sbjct: 331 ---------------------------------FKTAKPMGGVVEGDVELQSIKIYAPES 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G +N+ N + DV+HI DI+A I +L G DDID+LGNRR+RSVGE+ Sbjct: 358 EGERSINVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT V YL+A EE+N +AQAN L E+G F +E + R Sbjct: 538 KVNEFGFIETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVAR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+ +E+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 598 FRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAA++ K G+VE+V+A I +R VE D +D Y++ KF Sbjct: 658 PIVGTGMEYVSAKDSGAAVICKHPGVVERVEAREIWVRRYVEVDGQIVKGDLDRYKMQKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC NQRP+V VG+EV + +I+ADGPS +LG+LALGRN+LV FM W GYN+ED++ Sbjct: 718 IRSNQGTCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 778 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GD+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 265/1169 (22%), Positives = 436/1169 (37%), Gaps = 124/1169 (10%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + I+ E+VI S + + S K Sbjct: 98 KVRLINKETGEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 G T+ + + +Y+ + + + + + Sbjct: 158 KRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEI-TELLGD 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 N Y+ NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL+ VGR Sbjct: 217 NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRY 276 Query: 415 KMNMRLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 K+N +L++ + + E + A IL + N+G + + Sbjct: 277 KINKKLHIKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRILPYLEKNIGFKTAKP 336 Query: 467 VGEMLKNQYRLGLLRM-------ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 +G +++ L +++ ERSI ++ V I +++++ FF Sbjct: 337 MGGVVEGDVELQSIKIYAPESEGERSINVIGNANITRDV---KHITPGDILASISYFFNL 393 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L ++ + + R R R V R+ +T+ Sbjct: 394 --LYKVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTNAITP 447 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639 L++ A + + + + ++ + Sbjct: 448 QALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH---------------------KR 486 Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQR 698 L E + + + I + + S + Sbjct: 487 RLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFGFIE 546 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVA----KRAGIVEQVDAIRIVIRSVEGDLDP 754 + E V ++ + A +VA K + E +D + E + Sbjct: 547 TPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVARFRGENIVTN 606 Query: 755 STSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVA 814 + K S C+ D+ R + A+ + + ++ Sbjct: 607 KERIDYMDVSPKQVVSAATACIPFL----ENDDSNRALMGANMQRQAVPLMNPESPIVGT 662 Query: 815 FMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEG 872 M + + +I + +V I + + + G + + + Sbjct: 663 GMEYVSAKDSGAAVICKHPGVVERVEAREIWVRRYVEVDGQIVKGDLDRYKMQKFIRSNQ 722 Query: 873 LKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 ++ I+ VG EV G+IL + + +L + D + Sbjct: 723 GTCYNQRPIVSVGNEVVKGEILADGPS-MELGELALGRNVLVGFMTWDGYNYEDAII--- 778 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 779 --MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVG 835 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 G K T ++ R F + +V+ + Sbjct: 836 AEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGII------ 889 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 K+ + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SRILP EDMP+L Sbjct: 890 LDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYL 949 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ Sbjct: 950 PDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEA 1009 Query: 1173 EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG 1232 T ++DG Sbjct: 1010 GMANDAK----------------------------TILYDG------------------- 1022 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQ Sbjct: 1023 -------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQ 1075 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAAY LQE+LT+KSDDV+GR + YE+IV G + E G PESF VL+K Sbjct: 1076 RFGEMEVWALEAYGAAYTLQEILTVKSDDVIGRVKTYEAIVKGENVPEPGVPESFKVLIK 1135 Query: 1353 EMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 E+Q+LG+ + + +S + D + Sbjct: 1136 ELQSLGMDVKMMSSDDTEIEMRDTEDDDD 1164 >gi|257868143|ref|ZP_05647796.1| DNA directed RNA polymerase subunit beta [Enterococcus casseliflavus EC30] gi|257874582|ref|ZP_05654235.1| DNA directed RNA polymerase subunit beta [Enterococcus casseliflavus EC10] gi|257877752|ref|ZP_05657405.1| DNA directed RNA polymerase subunit beta [Enterococcus casseliflavus EC20] gi|257802257|gb|EEV31129.1| DNA directed RNA polymerase subunit beta [Enterococcus casseliflavus EC30] gi|257808746|gb|EEV37568.1| DNA directed RNA polymerase subunit beta [Enterococcus casseliflavus EC10] gi|257811918|gb|EEV40738.1| DNA directed RNA polymerase subunit beta [Enterococcus casseliflavus EC20] Length = 1208 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 591/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 54 DILPIEGFNGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKSQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTIEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRSLLNARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETLGA------------ 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + + +V P D Sbjct: 329 FIDNGLNSVTYYPSEDGVVTEPMTVQVIKVFSPKDP------------------------ 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N R +R DIIA + +L G G +DDID+LGNRR+RSVGE+ Sbjct: 365 --EQEVNVIGNGYPDTATRTVRPADIIASMSYFFNLMEGIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLASYA 542 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN YGFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDGSF ++V R Sbjct: 543 KVNKYGFIETPYRRVDRETGRVTDKIDYLTADTEDHYVVAQANSLLNEDGSFVNDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 603 ATSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPKA 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K GIVE VDA + +R G LD +Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGIVEYVDAAEVRVRRDNGALD-------VYSVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRPLV +G++V + DI+ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPLVALGEKVEKGDILADGPSMEQGEMALGQNVLVAFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 KDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 184/583 (31%), Positives = 259/583 (44%), Gaps = 82/583 (14%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR---DTKL 856 ++ PW G E I E+ A Sbjct: 646 MGANMQRQAVPLINPKAPWVGTGMEYKSAHDSGAALLCKHDG--IVEYVDAAEVRVRRDN 703 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G ++ + ++ ++ +G +V GDIL + + M + +L A Sbjct: 704 GALDVYSVTKFRRSNSGTSYNQRPLVALGEKVEKGDILADGPS-MEQGEMALGQNVLVAF 762 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + + D + V V + + + + E +I + D Sbjct: 763 MTWEGYNYEDAIIMSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKD 822 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE I+ + ++L G+ G L + E R +V Sbjct: 823 LDEMGIIRIGAEVKDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAR-----------EV 871 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 + + + KI + GD++ PGV +V+V++ KR I GDKMA Sbjct: 872 RDTSLRVPHGGGGIVHDV------KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMA 925 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG+VSRI+P EDMPFL DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG Sbjct: 926 GRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIH 985 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 + + + D ++ D+ Sbjct: 986 VATPVFDGASDEDVW--------------------------------------------- 1000 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 A A + +++LYDG TGEPFD ++VG +YM+KL HMV DK++ARS Sbjct: 1001 --ATVAE-------AGMASDAKTVLYDGRTGEPFDGRISVGVMYMIKLAHMVDDKLHARS 1051 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+ Sbjct: 1052 IGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEA 1111 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 IV G + G PESF VLVKE+Q+LGL + + + Sbjct: 1112 IVKGEPIPKPGVPESFRVLVKELQSLGLDMRVLDIDDAEIELR 1154 >gi|301299456|ref|ZP_07205732.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852938|gb|EFK80546.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1196 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 430/966 (44%), Positives = 593/966 (61%), Gaps = 84/966 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G RVR+ + + E++D+P+LIEVQ SY FL +EGL+ F Sbjct: 1 MAGHLVKYGKHRVRRSYSRIKEVLDLPNLIEVQTDSYKWFL----------DEGLREMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V++ D Y+ PL +TLRLI Sbjct: 51 DIMPIEDFQGKLSLEFVDYQLLEPKYTVEEARQHDANYSAPLHVTLRLI---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F+ + + +G+ Y Sbjct: 102 ETGEIKSQDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFNSELDK---NGRTNY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE----EILSTFYPKI 236 +IP++G W++ E D+K++ +VRIDR RK+P+T + ALG S+ EIL + + Sbjct: 159 GTTVIPNRGAWLEYETDAKNVAYVRIDRTRKIPLTELIRALGYGSDNEIVEILGSNSDSL 218 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKF 295 + + D + D V + + GE +S + L + K + Sbjct: 219 MLTLEKDVHK---NMDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLAP 275 Query: 296 LGITS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL 347 +G L L VAE + + +TGEI + +VID++ ++++ RD Sbjct: 276 VGRYKINKKLDLKTRLLNLTVAETLADPDTGEIIVNKDEVIDKQVMDKLAPYLARDDFKT 335 Query: 348 YVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYD 407 + + ++ + L I +V P D Sbjct: 336 FTFHPSEEGVVQEPMT-----------LQIVKVYSPKDP--------------------- 363 Query: 408 LSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSV 467 +N+ N + +HI DI+A + +L+ G G+ DDID+LGNRR RSV Sbjct: 364 -----EKVVNVIGNANVDIQFKHITPADIVASMNYFFNLQEGMGSTDDIDHLGNRRTRSV 418 Query: 468 GEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEE 527 GE+L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 419 GELLQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMD 478 Query: 528 HVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 N L ++H RR SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ Sbjct: 479 QTNPLGELSHKRRFSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLS 538 Query: 588 SFARVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELV 645 S+AR+N YGF+ETPYR+V KVT+ + YL+A EE+N IAQANS L++DGSF +++V Sbjct: 539 SYARINKYGFVETPYRRVSWETHKVTDKIDYLTADEEDNYVIAQANSPLNDDGSFVDDVV 598 Query: 646 FCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 R +++ + EK+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+K Sbjct: 599 MARKKDDDVEISTEKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIK 658 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 AP VGTG+E A SG A++++ G VE VDA I +R +G LD Y+LM Sbjct: 659 PHAPLVGTGIEYKAAHDSGVALISEHEGTVEYVDAREIRVRRDDGSLDK-------YKLM 711 Query: 766 KFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 KF RSN NQ P+V+VGD V ++++ADGP+ + G+LALG+N L+AFM W GYNFED Sbjct: 712 KFHRSNGGKNYNQTPIVRVGDRVDADEVLADGPAMENGELALGQNPLIAFMTWDGYNFED 771 Query: 826 SMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVG 885 ++ I+ER+V EDV+TSIHIEE E ARDTKLGPEEITR+IPNV E+ LKN+DE GII +G Sbjct: 772 AIAINERLVKEDVYTSIHIEEHESEARDTKLGPEEITREIPNVGEDALKNLDEFGIIRIG 831 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 AEV GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF Sbjct: 832 AEVKDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVQDVKIF 891 Query: 946 NRHGID 951 R G D Sbjct: 892 TREGGD 897 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 238/1083 (21%), Positives = 385/1083 (35%), Gaps = 120/1083 (11%) Query: 306 LYVAEDIVNGETG----EIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 VA ++ E+ G D + +E + + + L D Sbjct: 177 KNVAYVRIDRTRKIPLTELIRALGYGSDNEIVEILGSNSDSLMLTLEKDV---------- 226 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 + +++L DIY +RPG+ T + S+ FFD +YDL+ VGR K+N +L Sbjct: 227 HKNMDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLAPVGRYKINKKL- 285 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + ++ + +A + N ID + + + Sbjct: 286 -DLKTRLLNLTVAETLADPDTGEIIVNKDEVIDKQVMDKLAPYLARDDFKTFTFHPSEEG 344 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + + P+ ++N + Q + S Sbjct: 345 VVQEPMTLQIVKVYSPKDPEKVVNVIGNANVDI------QFKHITPADIVASMNYFFNLQ 398 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 +G R V + + + S+ + V I Sbjct: 399 EGMGSTDDIDHLGNRRTRSVGELLQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLI--N 456 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 R V + + + L + + Sbjct: 457 IRPVVASIK----EFFGSSQLSQFMDQTNPLGELSHKRRFSALGPGGLTRDRAGYEVRDV 512 Query: 662 DFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + + I + + S + + E V ++ + A Sbjct: 513 HYTHYGRMCPIETPEGPNIGLINSLSSYARINKYGFVETPYRRVSWETHKVTDKIDYLTA 572 Query: 721 KSSGAAIVAKRA----GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ VD + + + + + + K + C+ Sbjct: 573 DEEDNYVIAQANSPLNDDGSFVDDVVMARKKDDDVEISTEKVDYMDVSPKQVVAVATACI 632 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 + +D ++ A+ A + G ++ + ++SE Sbjct: 633 P---------FLENDDSNRALMGANMQRQAVPLIKPHAPLVGTGIEYKAAHDSGVALISE 683 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 T +++ E+ R ++ + S G KN ++ I+ VG V D ++ Sbjct: 684 HEGTVEYVDAREIRVRRDDGSLDKYKLMKFHRSNGG-KNYNQTPIVRVGDRV-DADEVLA 741 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 + + L A + D V V H + + Sbjct: 742 DGPAMENGELALGQNPLIAFMTWDGYNFEDAIAINERLVKEDVYTSIHIEEHESEARDTK 801 Query: 957 ISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 + E +I + D DE I+ + +IL G+ G L Sbjct: 802 LGPEEITREIPNVGEDALKNLDEFGIIRIGAEVKDGDILVGKVTPKGVTELSAEERLLHA 861 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + E R +V+ + + KI + GD++ PGV Sbjct: 862 IFGEKAR-----------EVRDTSLRVPHGAGGIVQDV------KIFTREGGDELSPGVN 904 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 +V+V++A KR +Q GDKMAGRHGNKG VS ++P EDMPF+ DGTP+DI+L+P+GVPSRM Sbjct: 905 MMVRVYIAQKRKLQVGDKMAGRHGNKGTVSVVIPEEDMPFMPDGTPIDIMLSPMGVPSRM 964 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 N+GQ+ + HLG A LG + S + D + DI Sbjct: 965 NIGQVLDLHLGMAARKLGIHVASPVFDGARDEDIWSALQEAGLPGDGK------------ 1012 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 T ++DG TGE FD + V Sbjct: 1013 ----------------TVLYDG--------------------------RTGEAFDNRIAV 1030 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G +Y LKL HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1031 GVMYYLKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1090 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNS 1371 QE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+QALG+ + + ++ Sbjct: 1091 QEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGMDMKVLDADKNEI 1150 Query: 1372 AKM 1374 Sbjct: 1151 ELR 1153 >gi|300214103|gb|ADJ78519.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (Transcriptase subunit beta) (RNA polymerase subunit beta) [Lactobacillus salivarius CECT 5713] Length = 1196 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 430/966 (44%), Positives = 593/966 (61%), Gaps = 84/966 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G RVR+ + + E++D+P+LIEVQ SY FL +EGL+ F Sbjct: 1 MAGHLVKYGKHRVRRSYSRIKEVLDLPNLIEVQTDSYKWFL----------DEGLREMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V++ D Y+ PL +TLRLI Sbjct: 51 DIMPIEDFQGKLSLEFVDYQLLEPKYTVEEARQHDANYSAPLHVTLRLI---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F+ + + +G+ Y Sbjct: 102 ETGEIKSQDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFNSELDK---NGRTNY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE----EILSTFYPKI 236 +IP++G W++ E D+K++ +VRIDR RK+P+T + ALG S+ EIL + + Sbjct: 159 GTTVIPNRGAWLEYETDAKNVAYVRIDRTRKIPLTELIRALGYGSDNEIVEILGSNSDSL 218 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKF 295 + + D + D V + + GE +S + L + K + Sbjct: 219 MLTLEKDVHK---NMDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLAP 275 Query: 296 LGITS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL 347 +G L L VAE + + +TGEI + +VID++ ++++ RD Sbjct: 276 VGRYKINKKLDLKTRLLNLTVAETLADPDTGEIIVNKDEVIDKQVMDKLAPYLARDDFKT 335 Query: 348 YVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYD 407 + + ++ + L I +V P D Sbjct: 336 FTFHPSEEGVVQEPMT-----------LQIVKVYSPKDP--------------------- 363 Query: 408 LSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSV 467 +N+ N + +HI DI+A + +L+ G G+ DDID+LGNRR RSV Sbjct: 364 -----EKVVNVIGNANVDIQFKHITPADIVASMNYFFNLQEGMGSTDDIDHLGNRRTRSV 418 Query: 468 GEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEE 527 GE+L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 419 GELLQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMD 478 Query: 528 HVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 N L ++H RR SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ Sbjct: 479 QTNPLGELSHKRRFSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLS 538 Query: 588 SFARVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELV 645 S+AR+N YGF+ETPYR+V KVT+ + YL+A EE+N IAQANS L++DGSF +++V Sbjct: 539 SYARINKYGFVETPYRRVSWETHKVTDKIDYLTADEEDNYVIAQANSPLNDDGSFVDDVV 598 Query: 646 FCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 R +++ + EK+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+K Sbjct: 599 MARKKDDDVEISTEKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIK 658 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 AP VGTG+E A SG A++++ G VE VDA I +R +G LD Y+LM Sbjct: 659 PHAPLVGTGIEYKAAHDSGVALISEHEGTVEYVDAREIRVRRDDGSLDK-------YKLM 711 Query: 766 KFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 KF RSN NQ P+V+VGD V ++++ADGP+ + G+LALG+N L+AFM W GYNFED Sbjct: 712 KFHRSNGGKNYNQTPIVRVGDRVDADEVLADGPAMENGELALGQNPLIAFMTWDGYNFED 771 Query: 826 SMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVG 885 ++ I+ER+V EDV+TSIHIEE E ARDTKLGPEEITR+IPNV E+ LKN+DE GII +G Sbjct: 772 AIAINERLVKEDVYTSIHIEEHESEARDTKLGPEEITREIPNVGEDALKNLDEFGIIRIG 831 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 AEV GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF Sbjct: 832 AEVKDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVQDVKIF 891 Query: 946 NRHGID 951 R G D Sbjct: 892 TREGGD 897 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 237/1083 (21%), Positives = 384/1083 (35%), Gaps = 120/1083 (11%) Query: 306 LYVAEDIVNGETG----EIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 VA ++ E+ G D + +E + + + L D Sbjct: 177 KNVAYVRIDRTRKIPLTELIRALGYGSDNEIVEILGSNSDSLMLTLEKDV---------- 226 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 + +++L DIY +RPG+ T + S+ FFD +YDL+ VGR K+N +L Sbjct: 227 HKNMDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLAPVGRYKINKKL- 285 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + ++ + +A + N ID + + + Sbjct: 286 -DLKTRLLNLTVAETLADPDTGEIIVNKDEVIDKQVMDKLAPYLARDDFKTFTFHPSEEG 344 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + + P+ ++N + Q + S Sbjct: 345 VVQEPMTLQIVKVYSPKDPEKVVNVIGNANVDI------QFKHITPADIVASMNYFFNLQ 398 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 +G R V + + + S+ + V I Sbjct: 399 EGMGSTDDIDHLGNRRTRSVGELLQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLI--N 456 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 R V + + + L + + Sbjct: 457 IRPVVASIK----EFFGSSQLSQFMDQTNPLGELSHKRRFSALGPGGLTRDRAGYEVRDV 512 Query: 662 DFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + + I + + S + + E V ++ + A Sbjct: 513 HYTHYGRMCPIETPEGPNIGLINSLSSYARINKYGFVETPYRRVSWETHKVTDKIDYLTA 572 Query: 721 KSSGAAIVAKRA----GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ VD + + + + + + K + C+ Sbjct: 573 DEEDNYVIAQANSPLNDDGSFVDDVVMARKKDDDVEISTEKVDYMDVSPKQVVAVATACI 632 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 + +D ++ A+ A + G ++ + ++SE Sbjct: 633 P---------FLENDDSNRALMGANMQRQAVPLIKPHAPLVGTGIEYKAAHDSGVALISE 683 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 T +++ E+ R ++ + S G KN ++ I+ VG V D ++ Sbjct: 684 HEGTVEYVDAREIRVRRDDGSLDKYKLMKFHRSNGG-KNYNQTPIVRVGDRV-DADEVLA 741 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 + + L A + D V V H + + Sbjct: 742 DGPAMENGELALGQNPLIAFMTWDGYNFEDAIAINERLVKEDVYTSIHIEEHESEARDTK 801 Query: 957 ISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 + E +I + D DE I+ + +IL G+ G L Sbjct: 802 LGPEEITREIPNVGEDALKNLDEFGIIRIGAEVKDGDILVGKVTPKGVTELSAEERLLHA 861 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + E R +V+ + + KI + GD++ PGV Sbjct: 862 IFGEKAR-----------EVRDTSLRVPHGAGGIVQDV------KIFTREGGDELSPGVN 904 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 +V+V++A KR +Q GDKMAGRHGNKG VS ++P EDMPF+ DGT +DI+L+P+GVPSRM Sbjct: 905 MMVRVYIAQKRKLQVGDKMAGRHGNKGTVSVVIPEEDMPFMPDGTSIDIMLSPMGVPSRM 964 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 N+GQ+ + HLG A LG + S + D + DI Sbjct: 965 NIGQVLDLHLGMAARKLGIHVASPVFDGARDEDIWSALQEAGLPGDGK------------ 1012 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 T ++DG TGE FD + V Sbjct: 1013 ----------------TVLYDG--------------------------RTGEAFDNRIAV 1030 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G +Y LKL HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1031 GVMYYLKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1090 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNS 1371 QE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+QALG+ + + ++ Sbjct: 1091 QEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGMDMKVLDADKNEI 1150 Query: 1372 AKM 1374 Sbjct: 1151 ELR 1153 >gi|297582441|ref|YP_003698221.1| DNA-directed RNA polymerase subunit beta [Bacillus selenitireducens MLS10] gi|297140898|gb|ADH97655.1| DNA-directed RNA polymerase, beta subunit [Bacillus selenitireducens MLS10] Length = 1181 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 435/964 (45%), Positives = 601/964 (62%), Gaps = 76/964 (7%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++D+P+LIE+Q ASY FL +EG++ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLDLPNLIEIQTASYQWFL----------DEGIREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI+ F+G +LEF+ Y PK+ VD+ RD+TY+ PL++ +RLI + Sbjct: 51 DISPISDFTGNLVLEFIDYSLGDPKYPVDESKERDVTYSAPLRVKVRLI---------NQ 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTF+I G +R++VSQL RSP ++F+ + +GK Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFIINGAERVIVSQLVRSPSVYFN---NKVDKNGKKGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KD+++VRIDR RK+P T L ALG S+ EI+ Sbjct: 159 TATVIPNRGAWLELETDAKDVVYVRIDRTRKIPATVLLRALGFGSDQEIIDLLGEDAYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 D S L+ + GE +ES K L K + +G Sbjct: 219 NTLDKDNTDSSEKALL------EIYERLRPGEPPTVESAKSLLDSRFFDPKRYDLASVGR 272 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +V+ +TGEI E G VID + L+++ ++ ++ Sbjct: 273 YKMNKKLHIKNRLFNQKLAETLVDPDTGEILAEEGTVIDRRVLDKLMPYLENNLGFRRIN 332 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N V D + +I VM T Sbjct: 333 L--------NGGVVDDEET------EIQSVMIYSQEPTAEEG------------------ 360 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 K+ + N + V++I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 361 ---EKIKVIANGTVGEKVKNITPADIIASVSYFFNLLHGVGNTDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSIQDTNVITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 537 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIE+PYRKV V+ V YL+A EE+N +AQAN+ L+EDG+FT+E + CR Sbjct: 538 KVNPFGFIESPYRKVDHDTGIVSEQVDYLTADEEDNYIVAQANAKLNEDGTFTDENIICR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+V R+++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL+ + Sbjct: 598 FRGENIIVSRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPHS 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKF 767 P VGTGME V AK SGAAIVA+ G VE+V A + +R + + D + + Y MKF Sbjct: 658 PLVGTGMEYVSAKDSGAAIVARARGRVEKVTAKFVDVRELADVDGKETEGDLKRYNFMKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSNQ TC NQRP+V G V + +I+ADG S + G++ALG+N+LV FM W GYN+ED++ Sbjct: 718 ERSNQGTCYNQRPIVSEGMIVEKGEILADGSSMEKGEMALGQNVLVGFMTWDGYNYEDAI 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII GAE Sbjct: 778 ILSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRTGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLR P G G V+DV++FNR Sbjct: 838 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIVLDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 496 bits (1277), Expect = e-137, Method: Composition-based stats. Identities = 181/540 (33%), Positives = 259/540 (47%), Gaps = 67/540 (12%) Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 + E + G + + ++ I+ G V G+IL + + Sbjct: 694 VRELADVDGKETEGDLKRYNFMKFERSNQGTCYNQRPIVSEGMIVEKGEILADGSS-MEK 752 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 M + +L + D + +S +V ++ I++ E + Sbjct: 753 GEMALGQNVLVGFMTWDGYNYEDAII-----LSERLVKDDVYTSIHIEEYESEARDTKLG 807 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 E + RD + RN+ R I G G K T ++ R Sbjct: 808 PEEITRDIPNVGEDALRNLDER-GIIRTGAEVKDGDILVGKVTPKGVTELTAEERLLHAI 866 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 F + +V+ + K+ + GD++PPGV ++V+V++ KR Sbjct: 867 FGEKAREVRDTSLRAPHGGDGIV------LDVKVFNREDGDELPPGVNQLVRVYIVQKRK 920 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 I GDKMAGRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+ E H+G Sbjct: 921 INEGDKMAGRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVLELHMGM 980 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSG 1203 A LG I + + D D+ + A + G Sbjct: 981 AARQLGIHIATPVFDGAREEDVW-------------------------ETIEEAGMARDG 1015 Query: 1204 VPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMV 1263 +++LYDG TGEPFD V+VG +YM+KL HMV Sbjct: 1016 -----------------------------KTVLYDGRTGEPFDSRVSVGVMYMIKLAHMV 1046 Query: 1264 SDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVV 1323 DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDD + Sbjct: 1047 DDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDTI 1106 Query: 1324 GRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKC 1383 GR + YE+IV G + E G PESF VL+KE+Q+LG+ + + +S + +E D + Sbjct: 1107 GRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGMDVKMLSSNDEEIDMLEHEDDDEQT 1166 >gi|15612689|ref|NP_240992.1| DNA-directed RNA polymerase subunit beta [Bacillus halodurans C-125] gi|13124539|sp|Q9Z9M2|RPOB_BACHD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|4512396|dbj|BAA75263.1| rpoB homologue (identity of 87% to B. subtilis ) [Bacillus halodurans] gi|10172738|dbj|BAB03845.1| DNA-directed RNA polymerase beta subunit [Bacillus halodurans C-125] Length = 1180 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 443/964 (45%), Positives = 600/964 (62%), Gaps = 77/964 (7%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M ++ G R R+ + + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 1 MTGQLIQYGRHRQRRSYARINEVLELPNLIEIQTASYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G +LEF+ Y PK+ VD+ RD+TYA PL++ +RLI K Sbjct: 51 DISPIQDFTGNLVLEFIDYSLGEPKYPVDESKERDVTYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTF+I G +R++VSQL RSP +++ + +GK Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFIINGAERVIVSQLVRSPSVYYSEKIDK---NGKKGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KDI++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 TATVIPNRGAWLELETDAKDIVYVRIDRTRKIPVTVLLRALGFGSDQEIIDLLGEDEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK---- 294 + + L+ + GE +E+ K L K + Sbjct: 219 NTLEKDNTDSAEKALL------EIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGR 272 Query: 295 ----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +++ ETGE+ E G +ID ++L+ I + Sbjct: 273 YKVNKKLHIKNRLFNQRLAETLIDPETGEVIAEEGSIIDRRTLDRI------------LP 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + NN R ++ + + L ++ P D Sbjct: 321 YLENNVGFRTVRMSGGVVEEDEVRLQSVKIYAPDD------------------------Q 356 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G + + N +++HI DIIA I +L + G DDID+LGNRR+RSVGE+ Sbjct: 357 DGEHVIRVIGNGLVEKEIKHITPADIIASINYFFNLLHSVGGTDDIDHLGNRRLRSVGEL 416 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 417 LQNQFRIGLSRMERVVRERMSIQDPNSITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 476 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A Sbjct: 477 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYA 536 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GF+ETPYR+V GKVT + YL+A EE+N +AQAN L EDGSF +E + R Sbjct: 537 KVNEFGFMETPYRRVDPETGKVTAQIDYLTADEEDNYVVAQANMKLAEDGSFIDENIIAR 596 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE I+V R+++D++D SPKQVVS A S IPFLENDDSNR LMG NMQRQAVPLL EA Sbjct: 597 FRGENIVVSRDRVDYMDVSPKQVVSAATSCIPFLENDDSNRALMGANMQRQAVPLLVPEA 656 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPS-TSGVDIYRLMKF 767 P VGTGME V AK SGAAIV+K GIVE+V A I +R +E +D YRL KF Sbjct: 657 PIVGTGMEHVSAKDSGAAIVSKHRGIVERVTAKEIWVRRLEEVDGKEIKGDLDKYRLQKF 716 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ T NQRP+VK GD V + +I+ADGPS + G++ALGRN+LV FM W GYN+ED++ Sbjct: 717 IRSNQGTSYNQRPIVKEGDVVEKREILADGPSMEKGEMALGRNVLVGFMTWEGYNYEDAI 776 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAE Sbjct: 777 ILSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAE 836 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLR P G G V+DV+IFNR Sbjct: 837 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIVLDVKIFNR 896 Query: 948 HGID 951 D Sbjct: 897 EDGD 900 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 252/1052 (23%), Positives = 407/1052 (38%), Gaps = 108/1052 (10%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D + + Y+RNTL D + ALL+IY +RPG+ T A+S+ + FFD +YDL Sbjct: 208 IDLLGEDEYLRNTLEKDNTDSAEKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDL 267 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 + VGR K+N +L++ + + + L+D G+ ++ + R + + Sbjct: 268 ANVGRYKVNKKLHIK--------NRLFNQRLAETLIDPETGEVIAEEGSIIDRRTLDRIL 319 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 L+N +RM + + ++ + V + + + +H Sbjct: 320 PYLENNVGFRTVRMSGGV---VEEDEVRLQSVKIYAPDDQDGEHVIRVIGNGLVEKEIKH 376 Query: 529 VNSLSRITHTRRL-SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 + I + L G + R + G + + G + Sbjct: 377 ITPADIIASINYFFNLLHSVGGTDDIDHLGNRRLRS--VGELLQNQFRIGLSRMERVVRE 434 Query: 588 SFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 + + + + + + + + L Sbjct: 435 RMSIQDPNSITPQALINIRPVIASIK-EFFGSSQLSQFMDQTNPLAELTHKRRLSALGPG 493 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKA 706 E + + + I + + + + + Sbjct: 494 GLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNEFGFMETPYRRVDP 553 Query: 707 EAPFVGTGMESVVAKSSGAAIVA----KRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 E V ++ + A +VA K A +D I E + + Sbjct: 554 ETGKVTAQIDYLTADEEDNYVVAQANMKLAEDGSFIDENIIARFRGENIVVSRDRVDYMD 613 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 K S +C+ + +D ++ +LV P G Sbjct: 614 VSPKQVVSAATSCIP---------FLENDD--SNRALMGANMQRQAVPLLVPEAPIVGTG 662 Query: 823 FE-------DSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 E + ++S+ +V I + E + G + R + Sbjct: 663 MEHVSAKDSGAAIVSKHRGIVERVTAKEIWVRRLEEVDGKEIKGDLDKYRLQKFIRSNQG 722 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 + ++ I+ G V +IL + + M +L + + D + Sbjct: 723 TSYNQRPIVKEGDVVEKREILADGPS-MEKGEMALGRNVLVGFMTWEGYNYEDAII---- 777 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 778 -LSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRVGA 835 Query: 994 NAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 G K T ++ R F + +V+ + Sbjct: 836 EVKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIV------L 889 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 KI + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMP+L Sbjct: 890 DVKIFNREDGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYLP 949 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 950 DGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARRLGLHVASPVFDGASEEDVWATLEEAG 1009 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 T ++DG Sbjct: 1010 MARDGK----------------------------TILYDG-------------------- 1021 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1022 ------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQR 1075 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE Sbjct: 1076 FGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKE 1135 Query: 1354 MQALGLSIDLENSRTKNSAKME-EIPDFNKCE 1384 +Q+LG+ + + +S + E + D + Sbjct: 1136 LQSLGMDVKMLSSTEEEIEMKELDDEDEQASD 1167 >gi|257871167|ref|ZP_05650820.1| DNA directed RNA polymerase subunit beta [Enterococcus gallinarum EG2] gi|257805331|gb|EEV34153.1| DNA directed RNA polymerase subunit beta [Enterococcus gallinarum EG2] Length = 1208 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 593/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 54 DILPIEGFNGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKSQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSDSLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTIEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRSLLNARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETLGA------------ 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + + +V P D Sbjct: 329 FIDNGLNSVTYYPSEDGVVTEPMTVQVIKVFSPKDP------------------------ 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N VR +R DIIA + +L G G +DDID+LGNRR+RSVGE+ Sbjct: 365 --EQEVNVIGNGYPDTTVRTVRPADIIASMSYFFNLMEGIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLASYA 542 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN YGFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F ++V R Sbjct: 543 KVNKYGFIETPYRRVDRETGRVTDQIDYLTADIEDHYVVAQANSLLNEDGTFVNDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ ++ Sbjct: 603 ATSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPKS 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K+ GIVE VDA I +R G LD +Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKQDGIVEYVDAAEIRVRRDNGALD-------VYSVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRPLV +G++V + DI+ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPLVALGEKVEKGDILADGPSMENGEMALGQNVLVAFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 KDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 176/499 (35%), Positives = 242/499 (48%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +G +V GDIL + M + +L A + + D + V V Sbjct: 728 LVALGEKVEKGDILADGPS-MENGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKDDVY 786 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + ++L G+ Sbjct: 787 TSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKDGDLLVGKVT 846 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 847 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 889 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 890 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 949 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D ++ D+ Sbjct: 950 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGASDEDVW--------- 1000 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 A A + +++ Sbjct: 1001 --------------------------------------ATVAE-------AGMASDAKTV 1015 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD ++VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1016 LYDGRTGEPFDGRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1075 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1135 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + Sbjct: 1136 SLGLDMRVLDIDDAEIELR 1154 >gi|218290023|ref|ZP_03494190.1| DNA-directed RNA polymerase, beta subunit [Alicyclobacillus acidocaldarius LAA1] gi|218239857|gb|EED07045.1| DNA-directed RNA polymerase, beta subunit [Alicyclobacillus acidocaldarius LAA1] Length = 1176 Score = 860 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 440/964 (45%), Positives = 602/964 (62%), Gaps = 80/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R+ + + E++D+P+LIE+Q+ SY+ FL EGL+ F Sbjct: 1 MQGHMVKYGW-AERRSYARIREVLDLPNLIEIQQKSYEWFLR----------EGLRETFA 49 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PIT F+G +LEFV Y PK+DV++ RD+TYA PL++ +RL+ K Sbjct: 50 DISPITDFTGNLVLEFVDYSLGEPKYDVEESKERDVTYAAPLRVKVRLL---------NK 100 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ +++GD PLMT GTF+I G +R++VSQL RSP +++ + +GK + Sbjct: 101 ETGEVKEQEVFLGDFPLMTDTGTFIINGAERVIVSQLVRSPSVYYSSKIDK---NGKRTF 157 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 A +IP++G W++ E D+KD+++VRIDR RK+P+T L ALG+ S+ EI+ Sbjct: 158 AATVIPNRGAWLEFETDAKDVVYVRIDRTRKLPITVLLRALGLSSDAEIIELLGEDEYLQ 217 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + + + GE +E+ + L + K Sbjct: 218 NTLDKDTTDSTE------RALIEIYERLRPGEPPTVENARALLASRFFDPKRYDLAAVGR 271 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI EAG V+D ++L+ I + Sbjct: 272 YKINKKLHLKNRLLNQRLAETLVDEETGEIIAEAGTVLDRRTLDRI------------IP 319 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++ T ++ + L + ++ P + Sbjct: 320 RLSGKVGRFTIRGTRDLFEQDEIPLQMVKIFSPAE------------------------- 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +++ N + P DV++I DIIA + +L G GT DDID+LGNRR+RSVGE+ Sbjct: 355 -DGKVLHVISNGELPADVKYITPSDIIAAVSYFFNLLRGVGTTDDIDHLGNRRLRSVGEL 413 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D ++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 414 LQNQFRIGLSRMERVVRERMSIQDASAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTN 473 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A Sbjct: 474 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYA 533 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN YGFIETPYR+V G VT+ + YL+A EEEN IAQAN L EDG F E + R Sbjct: 534 RVNEYGFIETPYRRVDPETGVVTDQIDYLTADEEENYLIAQANEPLTEDGHFVAEEITVR 593 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 + I V R++ID++D SPKQVVS+A +LIPFLENDD+NR LMG NMQRQAVPLL ++ Sbjct: 594 SREDVITVSRDRIDYMDVSPKQVVSVATALIPFLENDDANRALMGSNMQRQAVPLLVTDS 653 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKF 767 P VGTGME AK SG +V+K G+VE+V A I +R D V Y+L+KF Sbjct: 654 PLVGTGMEYQAAKDSGVCVVSKHNGVVERVTAREIWVREEAVVDGQVVKGNVHKYKLIKF 713 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQNTC+NQRP+V+ GD V+ DI+ADGP+T G+LALGRN+LVAFM W GYN+ED++ Sbjct: 714 ARSNQNTCLNQRPIVREGDRVKVGDILADGPATQNGELALGRNVLVAFMTWEGYNYEDAI 773 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 LISE+MV EDV+TSIHIEE+E+ ARDTKLGPEEITRDIPNV E+ LKN+DE GII +GAE Sbjct: 774 LISEKMVKEDVYTSIHIEEYEIEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRIGAE 833 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 + DILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G +G VVDV++F R Sbjct: 834 ITTNDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGAGIVVDVKVFTR 893 Query: 948 HGID 951 D Sbjct: 894 ENGD 897 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 199/576 (34%), Positives = 274/576 (47%), Gaps = 79/576 (13%) Query: 816 MPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 M + ++S+ +V I + E V+ G + I Sbjct: 660 MEYQAAKDSGVCVVSKHNGVVERVTAREIWVREEAVVDGQVVKGNVHKYKLIKFARSNQN 719 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 +++ I+ G V GDIL + + +L A + + D L Sbjct: 720 TCLNQRPIVREGDRVKVGDILADGPATQN-GELALGRNVLVAFMTWEGYNYEDAILISEK 778 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLME 988 V V + I+ + + E I + D DE+ I+ + Sbjct: 779 MVKEDVYTSIHIEEYEIEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRIGAEITTND 838 Query: 989 ILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSI 1048 IL G+ G L + E R +V+ + Sbjct: 839 ILVGKVTPKGVTELTAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGAGIVVD 887 Query: 1049 LEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCED 1108 + K+ + GD++P GV ++V+V+VA KR I GDKMAGRHGNKG+V+RILP ED Sbjct: 888 V------KVFTRENGDELPAGVNQLVRVYVAQKRKISEGDKMAGRHGNKGVVARILPEED 941 Query: 1109 MPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPL 1168 MPFL+DGTPV+IVLNPLGVPSRMN+GQ+ ETHLG A LG K+ + + D D Sbjct: 942 MPFLEDGTPVEIVLNPLGVPSRMNIGQVLETHLGMAAKVLGLKMATPVFDGAKPED---- 997 Query: 1169 RSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADL 1228 VF LR A L Sbjct: 998 -----------------------------------------VF---------ETLREAGL 1007 Query: 1229 DESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 E G+ +LYDG TGEPF+ VTVGY+YM+KL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1008 PEDGKQVLYDGRTGEPFENRVTVGYVYMMKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQ 1067 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF Sbjct: 1068 FGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFK 1127 Query: 1349 VLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 VL+KE+Q+LG+ + + + + E D + + Sbjct: 1128 VLIKELQSLGMDVKILSGDEREIEMKEMDDDEDSPD 1163 >gi|258512678|ref|YP_003186112.1| DNA-directed RNA polymerase, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479404|gb|ACV59723.1| DNA-directed RNA polymerase, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1176 Score = 860 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 439/964 (45%), Positives = 602/964 (62%), Gaps = 80/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R+ + + E++D+P+LIE+Q+ SY+ FL EGL+ F Sbjct: 1 MQGHMVKYGW-AERRSYARIREVLDLPNLIEIQQKSYEWFLR----------EGLRETFA 49 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PIT F+G +LEFV Y PK+DV++ RD+TYA PL++ +RL+ K Sbjct: 50 DISPITDFTGNLVLEFVDYSLGEPKYDVEESKERDVTYAAPLRVKVRLL---------NK 100 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ +++GD PLMT+ GTF+I G +R++VSQL RSP +++ + +GK + Sbjct: 101 ETGEVKEQEVFLGDFPLMTETGTFIINGAERVIVSQLVRSPSVYYSSKIDK---NGKRTF 157 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 A +IP++G W++ E D+KD+++VRIDR RK+P+T L ALG+ S+ EI+ Sbjct: 158 AATVIPNRGAWLEFETDAKDVVYVRIDRTRKLPITVLLRALGLSSDAEIIELLGEDEYLQ 217 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + + + GE +E+ + L + K Sbjct: 218 NTLDKDTTDSTE------RALIEIYERLRPGEPPTVENARALLASRFFDPKRYDLAAVGR 271 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI EAG V+D ++L+ I + Sbjct: 272 YKINKKLHLKNRLLNQRLAETLVDEETGEIIAEAGTVLDRRTLDRI------------IP 319 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++ T ++ + L + ++ P + Sbjct: 320 RLSGKVGRFTIRGTRDLFEQDEIPLQMVKIFSPAE------------------------- 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +++ N + P DV++I DIIA + +L G GT DDID+LGNRR+RSVGE+ Sbjct: 355 -DGKVLHVISNGELPADVKYITPSDIIAAVSYFFNLLRGVGTTDDIDHLGNRRLRSVGEL 413 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D ++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 414 LQNQFRIGLSRMERVVRERMSIQDASAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTN 473 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A Sbjct: 474 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYA 533 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 VN YGFIETPYR+V G VT+ + YL+A EEEN IAQAN L EDG F E + R Sbjct: 534 CVNEYGFIETPYRRVDPETGVVTDQIDYLTADEEENYLIAQANEPLTEDGHFVAEEITVR 593 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 + I V R++ID++D SPKQVVS+A +LIPFLENDD+NR LMG NMQRQAVPLL ++ Sbjct: 594 SREDVITVSRDRIDYMDVSPKQVVSVATALIPFLENDDANRALMGSNMQRQAVPLLVTDS 653 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKF 767 P VGTGME AK SG +V+K G+VE+V A I +R D V Y+L+KF Sbjct: 654 PLVGTGMEYQAAKDSGVCVVSKHNGVVERVTAREIWVREEAVVDGQVVKGNVHKYKLIKF 713 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQNTC+NQRP+V+ GD V+ DI+ADGP+T G+LALGRN+LVAFM W GYN+ED++ Sbjct: 714 ARSNQNTCLNQRPIVREGDRVKVGDILADGPATQNGELALGRNVLVAFMTWEGYNYEDAI 773 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 LISE+MV EDV+TSIHIEE+E+ ARDTKLGPEEITRDIPNV E+ LKN+DE GII +GAE Sbjct: 774 LISEKMVKEDVYTSIHIEEYEIEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRIGAE 833 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 + DILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G +G VVDV++F R Sbjct: 834 ITTNDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGAGIVVDVKVFTR 893 Query: 948 HGID 951 D Sbjct: 894 ENGD 897 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 199/576 (34%), Positives = 274/576 (47%), Gaps = 79/576 (13%) Query: 816 MPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 M + ++S+ +V I + E V+ G + I Sbjct: 660 MEYQAAKDSGVCVVSKHNGVVERVTAREIWVREEAVVDGQVVKGNVHKYKLIKFARSNQN 719 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 +++ I+ G V GDIL + + +L A + + D L Sbjct: 720 TCLNQRPIVREGDRVKVGDILADGPATQN-GELALGRNVLVAFMTWEGYNYEDAILISEK 778 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLME 988 V V + I+ + + E I + D DE+ I+ + Sbjct: 779 MVKEDVYTSIHIEEYEIEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRIGAEITTND 838 Query: 989 ILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSI 1048 IL G+ G L + E R +V+ + Sbjct: 839 ILVGKVTPKGVTELTAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGAGIVVD 887 Query: 1049 LEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCED 1108 + K+ + GD++P GV ++V+V+VA KR I GDKMAGRHGNKG+V+RILP ED Sbjct: 888 V------KVFTRENGDELPAGVNQLVRVYVAQKRKISEGDKMAGRHGNKGVVARILPEED 941 Query: 1109 MPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPL 1168 MPFL+DGTPV+IVLNPLGVPSRMN+GQ+ ETHLG A LG K+ + + D D Sbjct: 942 MPFLEDGTPVEIVLNPLGVPSRMNIGQVLETHLGMAAKVLGLKMATPVFDGAKPED---- 997 Query: 1169 RSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADL 1228 VF LR A L Sbjct: 998 -----------------------------------------VF---------ETLREAGL 1007 Query: 1229 DESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 E G+ +LYDG TGEPF+ VTVGY+YM+KL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1008 PEDGKQVLYDGRTGEPFENRVTVGYVYMMKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQ 1067 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF Sbjct: 1068 FGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFK 1127 Query: 1349 VLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 VL+KE+Q+LG+ + + + + E D + + Sbjct: 1128 VLIKELQSLGMDVKILSGDEREIEMKEMDDDEDSPD 1163 >gi|299541919|ref|ZP_07052242.1| DNA-directed RNA polymerase subunit beta [Lysinibacillus fusiformis ZC1] gi|298725657|gb|EFI66298.1| DNA-directed RNA polymerase subunit beta [Lysinibacillus fusiformis ZC1] Length = 1188 Score = 860 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 433/964 (44%), Positives = 602/964 (62%), Gaps = 76/964 (7%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ F + E++++P+LIE+Q ASY+ FL EGL+ F+ Sbjct: 1 MTGQLVQYGQHRQRRSFARIKEVLELPNLIEIQTASYEWFL----------EEGLREMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+DVD+C RD+TYA PL++ +RL K Sbjct: 51 DISPIEDFTGNLSLEFIDYSLGEPKYDVDECKERDVTYAAPLRVKVRLY---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F + +GK + Sbjct: 102 ETDEVKEQDVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFH---DKTDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 GATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDIIGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK---- 294 + + L+ + GE +ES K L K + Sbjct: 219 NTLEKDNSESTEKALL------EIYERLRPGEPPTVESAKSLLYSRFFDAKRYDLANVGR 272 Query: 295 ----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +V+ ETGEI +E G V+D ++L++I + Sbjct: 273 YKMNKKLHIKNRLFNQTIAETLVDPETGEILVEKGTVLDRRTLDKILPYLEDSSKGIGYR 332 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +++ + D + ++ P D + Sbjct: 333 TLSQVGGVLE----------DDVTIQSIKIYAPKDEAQK--------------------- 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N ++V++I D+++ + +L G DDID+LGNRR+RSVGE+ Sbjct: 362 ----EINIIGNAYIDEEVKNITPADVLSSVSYFFNLLYQVGATDDIDHLGNRRLRSVGEL 417 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 418 LQNQFRIGLSRMERVVRERMSINDTAAIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 477 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 478 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 537 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR++ +VT + YL+A EE+N Y+AQANS L+ DG+F + V R Sbjct: 538 KVNKFGFIETPYRRIDHETGRVTEQIDYLTADEEDNYYVAQANSPLNPDGTFANDEVVGR 597 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G+ + + ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL EA Sbjct: 598 FRGDNTVFNKAQMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLNPEA 657 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDI-YRLMKF 767 PFVGTGME V A+ SGAA+VAK GIVE V+A I +R +E G Y+L KF Sbjct: 658 PFVGTGMEHVDARDSGAAVVAKYDGIVEHVEARSIHVRRIEVVDGKEVKGDLTKYKLQKF 717 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ T NQRPLVKVG+ V+ DI+ADGPS + G+LALGRN+LVAFM W+G+N+ED++ Sbjct: 718 IRSNQGTSYNQRPLVKVGERVKPRDILADGPSMEKGELALGRNVLVAFMTWNGFNYEDAV 777 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TS+HIEE+E +RDTKLGPEEITRDIPNV E+ L+N+DE GII +GAE Sbjct: 778 IMSERLVKDDVYTSVHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAE 837 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 838 VRDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIILDVKVFNR 897 Query: 948 HGID 951 D Sbjct: 898 EDGD 901 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 183/554 (33%), Positives = 260/554 (46%), Gaps = 77/554 (13%) Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V SIH+ EV+ G + + + ++ ++ VG V P D Sbjct: 683 IVEHVEARSIHVRRIEVVDGKEVKGDLTKYKLQKFIRSNQGTSYNQRPLVKVGERVKPRD 742 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDK 952 IL + + + +L A + D + V V + + Sbjct: 743 ILADGPS-MEKGELALGRNVLVAFMTWNGFNYEDAVIMSERLVKDDVYTSVHIEEYESES 801 Query: 953 NERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV 1007 + + E I + D DE+ I+ R +IL G+ G Sbjct: 802 RDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVRDGDILVGKVTPKGVTELTAEER 861 Query: 1008 LSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMP 1067 L + E R +++ + K+ + GD++P Sbjct: 862 LLHAIFGEKARE-VRDTSLRVPHGAGGI----------------ILDVKVFNREDGDELP 904 Query: 1068 PGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV 1127 PGV ++V+ ++ KR I+ GDKMAGRHGNKG++SRILP EDMPF+ DGTPVDI+LNPLGV Sbjct: 905 PGVNQLVRAYIVQKRKIRVGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGV 964 Query: 1128 PSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISD 1187 PSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 965 PSRMNIGQVLELHLGMASRYLGVHMATPVFDGANEEDVW--------------------- 1003 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 + A + G ++ILYDG +GEPFD Sbjct: 1004 ----ETMEEAGMNRDG-----------------------------KTILYDGRSGEPFDN 1030 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1031 RVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1090 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 AY LQE+LT+KSDDVVGR + YE+IV G E G PESF VL+KE+Q+LG+ + + Sbjct: 1091 AYTLQEILTVKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLGMDVKMLTVN 1150 Query: 1368 TKNSAKMEEIPDFN 1381 + + + + Sbjct: 1151 DEEVELRDLDEEDD 1164 >gi|325567850|ref|ZP_08144400.1| DNA-directed RNA polymerase subunit beta [Enterococcus casseliflavus ATCC 12755] gi|325158482|gb|EGC70631.1| DNA-directed RNA polymerase subunit beta [Enterococcus casseliflavus ATCC 12755] Length = 1208 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 54 DILPIEGFNGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKSQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTIEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRSLLNARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETLGA------------ 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + + +V P D Sbjct: 329 FIDNGLNSVTYYPSEDGVVTEPMTVQVIKVFSPKDP------------------------ 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N R +R DIIA + +L G G +DDID+LGNRR+RSVGE+ Sbjct: 365 --EQEVNVIGNGYPDTATRTVRPADIIASMSYFFNLMEGIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGYSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLASYA 542 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN YGFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDGSF ++V R Sbjct: 543 KVNKYGFIETPYRRVDRETGRVTDKIDYLTADTEDHYVVAQANSLLNEDGSFVNDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 603 ATSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPKA 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K GIVE VDA + +R G LD +Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGIVEYVDAAEVRVRRDNGALD-------VYSVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRPLV +G++V + DI+ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPLVALGEKVEKGDILADGPSMEQGEMALGQNVLVAFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 KDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 184/583 (31%), Positives = 259/583 (44%), Gaps = 82/583 (14%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMAR---DTKL 856 ++ PW G E I E+ A Sbjct: 646 MGANMQRQAVPLINPKAPWVGTGMEYKSAHDSGAALLCKHDG--IVEYVDAAEVRVRRDN 703 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G ++ + ++ ++ +G +V GDIL + + M + +L A Sbjct: 704 GALDVYSVTKFRRSNSGTSYNQRPLVALGEKVEKGDILADGPS-MEQGEMALGQNVLVAF 762 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + + D + V V + + + + E +I + D Sbjct: 763 MTWEGYNYEDAIIMSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKD 822 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE I+ + ++L G+ G L + E R +V Sbjct: 823 LDEMGIIRIGAEVKDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAR-----------EV 871 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 + + + KI + GD++ PGV +V+V++ KR I GDKMA Sbjct: 872 RDTSLRVPHGGGGIVHDV------KIFTREAGDELAPGVNMLVRVYIVQKRKIHEGDKMA 925 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG+VSRI+P EDMPFL DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG Sbjct: 926 GRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIH 985 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 + + + D ++ D+ Sbjct: 986 VATPVFDGASDEDVW--------------------------------------------- 1000 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 A A + +++LYDG TGEPFD ++VG +YM+KL HMV DK++ARS Sbjct: 1001 --ATVAE-------AGMASDAKTVLYDGRTGEPFDGRISVGVMYMIKLAHMVDDKLHARS 1051 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+ Sbjct: 1052 IGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEA 1111 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 IV G + G PESF VLVKE+Q+LGL + + + Sbjct: 1112 IVKGEPIPKPGVPESFRVLVKELQSLGLDMRVLDIDDAEIELR 1154 >gi|229552693|ref|ZP_04441418.1| DNA-directed RNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229313899|gb|EEN79872.1| DNA-directed RNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 1253 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 584/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F Sbjct: 54 LAGHLVNYGKHRTRRSYARIKEVLDLPNLIEIQTNSYQWFL----------DEGLKEMFD 103 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V++ D Y+ PL +TLRL Sbjct: 104 DIMPIDDFQGKLSLEFVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLT---------NH 154 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F + + S ++ Y Sbjct: 155 ETGEIKSQDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFHSETDKNS---RVTY 211 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KDI +VRIDR RK+P+T + ALG S+ +I++ F Sbjct: 212 GTTVIPNRGAWLEYETDAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLM 271 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE +S + L K + +G Sbjct: 272 LTLEKD-VHKNTDDSRTDEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGR 330 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE + + +TGE+ + G +D + ++++ Sbjct: 331 YKVNKKLSLKTRLLNQVLAETLADPDTGEVLAQKGTKVDRQVMDKLAPYL---------- 380 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 DR D Y+ G ++ +S+ + DK Sbjct: 381 ------------------DRDDFKTVTYQPSDQGVMTDPIELQSIKVYSQVTPDKE---- 418 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N V+HI D++A + ++L+ G GT+DDID+LGNRR+RSVGE+ Sbjct: 419 -----INLIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTVDDIDHLGNRRIRSVGEL 473 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 474 LQNQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 533 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A Sbjct: 534 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA 593 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 VN YGFIETPYR+V KVT+ + YL+A EE+N +AQANS L++DGSF ++ V R Sbjct: 594 VVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDDTVLAR 653 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 I + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 654 HKDNNIEISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPHA 713 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME A SG A++A AG VE VDA +I +R +G LD Y+LMKF+ Sbjct: 714 PLVGTGMEYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALD-------TYKLMKFK 766 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V +GD V ++IIADGP+ G+LALG+N ++AFM W+ YN+ED+++ Sbjct: 767 RSNAGKNYNQRPIVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIV 826 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEE+E ARDTKLGPEE+TR+IPNV EE LK++DE G++ VGAEV Sbjct: 827 LSERLVKDDVYTSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEV 886 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R Sbjct: 887 RDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRE 946 Query: 949 GID 951 D Sbjct: 947 AGD 949 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 235/1073 (21%), Positives = 381/1073 (35%), Gaps = 104/1073 (9%) Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D + I + E F S+ I + + ++ + Sbjct: 228 DAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRT 287 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 +AL DIY +RPG+ T + S+ FFD +YDL++VGR K+N +L+L T + Sbjct: 288 DEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQV 347 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + L + + + ++ R + ++ Sbjct: 348 L-----------AETLADPDTGEVLAQKGTKVDRQVMDKLAPYLDRDDFKTVTYQPSDQG 396 Query: 491 SSVDI---DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 D S+ + ++ + ++ + S LG Sbjct: 397 VMTDPIELQSIKVYSQVTPDKEINLIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTV 456 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 +R V + + + S+ A V I R V Sbjct: 457 DDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMSIQDTATVTPQQLI--NIRPVVA 514 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + + + L + + + Sbjct: 515 SIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYG 570 Query: 668 PKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 + I + + S V+ + + V ++ + A Sbjct: 571 RMCPIETPEGPNIGLINSLASYAVVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNY 630 Query: 727 IVAKRA----GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 IVA+ VD + + K + C+ Sbjct: 631 IVAQANSPLNDDGSFVDDTVLARHKDNNIEISPDKVDYMDVSPKQVVAVATACIP----- 685 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTS 841 + +D ++ ++ P G E S V + + Sbjct: 686 ----FLENDD--SNRALMGANMQRQAVPLINPHAPLVGTGMEYKAAHDSGTAVLANNAGT 739 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 + + + + + G + + + KN ++ I+ +G V D ++ Sbjct: 740 VEYVDAKQIRVRREDGALDTYKLMKFKRSNAGKNYNQRPIVTIGDHV-DVDEIIADGPAM 798 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 + + + A + D + V D + H + + + Sbjct: 799 QNGELALGQNPIIAFMTWNMYNYEDAIVL----SERLVKDDVYTSIHIEEYESEARDTKL 854 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E+ + + L + G G K T +S R Sbjct: 855 GPEEVTREIPNVGEEALKD--LDEFGVVRVGAEVRDGDILVGKVTPKGVTELSAEERLLH 912 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 F + +V+ + + KI + GD++ PGV +V+V++ K Sbjct: 913 AIFGEKAREVRDTSLRVPHGGGGIIQDV------KIFTREAGDELSPGVNMMVRVYITQK 966 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG VS ++P EDMP+L DGTPVDI L+P+GVPSRMN+GQ+ E HL Sbjct: 967 RKIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVPSRMNIGQVLELHL 1026 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A LG + + + D + D+ Sbjct: 1027 GMAARNLGIHVATPVFDGANDKDLW----------------------------------- 1051 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 A + A + G+S+LYDG TGEPF+ V+VG +Y +KL+H Sbjct: 1052 ------------ATVKE-------AGMPSDGKSVLYDGRTGEPFENRVSVGVMYYMKLSH 1092 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 MV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD Sbjct: 1093 MVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDD 1152 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 VVGR + YE+IV G+ + G PESF VLVKE+QALGL + + + + Sbjct: 1153 VVGRVKTYEAIVKGDPIPKPGVPESFRVLVKELQALGLDMKVLGADKQEIELR 1205 >gi|199598822|ref|ZP_03212233.1| DNA-directed RNA polymerase subunit beta [Lactobacillus rhamnosus HN001] gi|199590234|gb|EDY98329.1| DNA-directed RNA polymerase subunit beta [Lactobacillus rhamnosus HN001] Length = 1253 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 584/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F Sbjct: 54 LAGHLVNYGKHRTRRSYARIKEVLDLPNLIEIQTNSYQWFL----------DEGLKEMFD 103 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V++ D Y+ PL +TLRL Sbjct: 104 DIMPIDDFQGKLSLEFVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLT---------NH 154 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F + + S ++ Y Sbjct: 155 ETGEIKSQDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFHSETDKNS---RVTY 211 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KDI +VRIDR RK+P+T + ALG S+ +I++ F Sbjct: 212 GTTVIPNRGAWLEYETDAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLM 271 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE +S + L K + +G Sbjct: 272 LTLEKD-VHKNTDDSRTDEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGR 330 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE + + +TGE+ + G +D + ++++ Sbjct: 331 YKVNKKLSLKTRLLNQVLAETLADPDTGEVVAQKGTKVDRQVMDKLAPYL---------- 380 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 DR D Y+ G ++ +S+ + DK Sbjct: 381 ------------------DRDDFKTATYQPSDQGVMTDPIELQSIKVYSQVTPDKE---- 418 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N V+HI D++A + ++L+ G GT+DDID+LGNRR+RSVGE+ Sbjct: 419 -----INLIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTVDDIDHLGNRRIRSVGEL 473 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 474 LQNQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 533 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A Sbjct: 534 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA 593 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 VN YGFIETPYR+V KVT+ + YL+A EE+N +AQANS L++DGSF ++ V R Sbjct: 594 VVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDDTVLAR 653 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 I + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 654 HKDNNIEISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPHA 713 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME A SG A++A AG VE VDA +I +R +G LD Y+LMKF+ Sbjct: 714 PLVGTGMEYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALD-------TYKLMKFK 766 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V +GD V ++IIADGP+ G+LALG+N ++AFM W+ YN+ED+++ Sbjct: 767 RSNAGKNYNQRPIVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIV 826 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEE+E ARDTKLGPEE+TR+IPNV EE LK++DE G++ VGAEV Sbjct: 827 LSERLVKDDVYTSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEV 886 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R Sbjct: 887 RDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRE 946 Query: 949 GID 951 D Sbjct: 947 AGD 949 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 264/1107 (23%), Positives = 402/1107 (36%), Gaps = 172/1107 (15%) Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D + I + E F S+ I + + ++ + Sbjct: 228 DAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRT 287 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 +AL DIY +RPG+ T + S+ FFD +YDL++VGR K+N +L+L T + Sbjct: 288 DEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQV 347 Query: 431 IR----KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 + D ++ + + L ++ +Q + +SI Sbjct: 348 LAETLADPDTGEVVAQKGTKVDRQVMDKLAPYLDRDDFKTATYQPSDQGVMTDPIELQSI 407 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT-----RRL 541 K + + V + + ++ L + RR+ Sbjct: 408 KVYSQVTPDKEINLIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTVDDIDHLGNRRI 467 Query: 542 SALGQ-------GGVARARAGVEMR-------DVHPTHYGRICPAETSEGHNIGLVSSLT 587 ++G+ G++R V R V P I P S G Sbjct: 468 RSVGELLQNQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQ 527 Query: 588 SFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLSAMEEENRYIAQAN 631 + N G + R V D T+ E I N Sbjct: 528 FMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLIN 587 Query: 632 SSLDEDGSFTEELVFCRCAGEEILVPR--EKIDFIDASPKQVVSIAASLIPFLENDDSNR 689 S + + +KID++ A + +A + P NDD + Sbjct: 588 SLASYAVVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPL--NDDGSF 645 Query: 690 VLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE 749 V + + + + + A+ +E D+ R ++ + Sbjct: 646 VDDTVLARHKDNNIEISPDKVDYMDVSPKQV----VAVATACIPFLENDDSNRALMGAN- 700 Query: 750 GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGR 809 QR PLV G E + A Sbjct: 701 -----------------MQRQAVPLINPHAPLVGTGMEYK----------------AAHD 727 Query: 810 NMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVS 869 + G + + + +F + + G R I + Sbjct: 728 SGTAVLANNAGTVEYVDAKQIRVRREDGALDTYKLMKF----KRSNAGKNYNQRPIVTIG 783 Query: 870 EEGLKNIDECGIICVGAEVNPGDILVG--KITPKGESPMTPEEKLLRAIFGEKAVDVRDT 927 + ++D II G + G++ +G I M E + DV Sbjct: 784 D----HVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIVLSERLVKDDVY-- 837 Query: 928 SLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLM 987 S + + R E E +D DE ++ R Sbjct: 838 -------TSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDL-DEFGVVRVGAEVRDG 889 Query: 988 EILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKS 1047 +IL G+ G L + E R +V+ + Sbjct: 890 DILVGKVTPKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIIQ 938 Query: 1048 ILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCE 1107 + KI + GD++ PGV +V+V++ KR IQ GDKMAGRHGNKG VS ++P E Sbjct: 939 DV------KIFTREAGDELSPGVNMMVRVYITQKRKIQVGDKMAGRHGNKGTVSVVVPEE 992 Query: 1108 DMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISP 1167 DMP+L DGTPVDI L+P+GVPSRMN+GQ+ E HLG A LG + + + D + D+ Sbjct: 993 DMPYLPDGTPVDICLSPMGVPSRMNIGQVLELHLGMAARNLGIHVATPVFDGANDKDLW- 1051 Query: 1168 LRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMAD 1227 A + A Sbjct: 1052 ----------------------------------------------ATVKE-------AG 1058 Query: 1228 LDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 + G+S+LYDG TGEPF+ V+VG +Y +KL+HMV DK++ARS G YSLVTQQPLGGK+ Sbjct: 1059 MPSDGKSVLYDGRTGEPFENRVSVGVMYYMKLSHMVDDKIHARSIGPYSLVTQQPLGGKA 1118 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G+ + G PESF Sbjct: 1119 QFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGDPIPKPGVPESF 1178 Query: 1348 NVLVKEMQALGLSIDLENSRTKNSAKM 1374 VLVKE+QALGL + + + + Sbjct: 1179 RVLVKELQALGLDMKVLGADKQEIELR 1205 >gi|116871647|ref|YP_848428.1| DNA-directed RNA polymerase subunit beta [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460679|sp|A0AF63|RPOB_LISW6 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|116740525|emb|CAK19645.1| DNA-directed RNA polymerase beta subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1184 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 446/963 (46%), Positives = 603/963 (62%), Gaps = 80/963 (8%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 + V G R R+ F + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 5 SGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFL----------DEGLREMFRD 54 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 + PI F+G LEF+ Y+ PK+ V++ RD YA PL++ LRLI K Sbjct: 55 ISPIEDFAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLI---------NKE 105 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 ++K+Q ++MGD PLMT+ GTF+I G +R++VSQL RSPG++F+ G+ +GK + Sbjct: 106 TGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFN---GKLDKNGKKGFG 162 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQ 240 +IP++G W++ E D+KD++HVRIDR RK+PVT L ALG S+ EI+ Sbjct: 163 STVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRN 222 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK-------- 291 + + L+ + GE +++ + L K Sbjct: 223 TLEKDNTDNAEKALL------EIYERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRY 276 Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS 351 + + L +AE +V+ ETGEI GD++D ++L++I + + Sbjct: 277 KINKKLHLKNRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQI------------IPN 324 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 + N R TD + L+ ++ P D Sbjct: 325 LENGVGFRTLRPTDGVME-DSVLVQSIKIYAPND-------------------------- 357 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 ++N+ N ++V+HI DII+ I +L +G G DDID+LGNRR+RSVGE+L Sbjct: 358 EEKEINIIGNAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELL 417 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQ+R+GL RMER ++ER+S D+ ++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 418 QNQFRIGLSRMERVVRERMSIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP 477 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+ Sbjct: 478 LGELTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAK 537 Query: 592 VNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 VN +GFIETPYR+V +VT+ + YL+A EE+N +AQANS LDE G+FTEE V R Sbjct: 538 VNKFGFIETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARF 597 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 E + V +E+ID++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPL+ EAP Sbjct: 598 RSENLAVEKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAP 657 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVDIYRLMKFQ 768 FVGTGME V AK SGAA+ AK GIVE V+A I +R V D T G+D Y L KF Sbjct: 658 FVGTGMEHVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFV 717 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQ TC NQRP V GD V + +I+ +GPS D G+LALGRN+LVAFM W GYN+ED+++ Sbjct: 718 RSNQGTCYNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAII 777 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEEFE ARDTKLGPEE+TRDIPNV E+ L+++DE GII VGAEV Sbjct: 778 MSERLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEV 837 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 D+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV+IF R Sbjct: 838 KDNDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTRE 897 Query: 949 GID 951 D Sbjct: 898 AGD 900 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 246/1044 (23%), Positives = 392/1044 (37%), Gaps = 106/1044 (10%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D + +N Y+RNTL D + + ALL+IY +RPG+ T A S+ FFD +YDL Sbjct: 211 IDLIGDNDYLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVDNARSLLVSRFFDPKRYDL 270 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 ++VGR K+N +L+L + + + LVD G+ D L R + + Sbjct: 271 ASVGRYKINKKLHLK--------NRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQII 322 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 L+N +G + + SV + S+ + + ++ + + + + Sbjct: 323 PNLEN--GVGFRTLRPTDGVMEDSVLVQSIKIYAPNDEEKEINIIGNAYIEENVKHITPS 380 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 S L +G +R V + + + S+ Sbjct: 381 DIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQD 440 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 + I R V + + + L Sbjct: 441 MTTITPQQLI--NIRPVVASIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGG 494 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 E + + + I + + S + + E Sbjct: 495 LTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPE 554 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 V ++ + A +VA+ + + E + S + Sbjct: 555 TNRVTDKIDYLTADEEDNYVVAQANSKL-----DEQGTFTEEEVMARFRSENLAVEKERI 609 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 + + + +D ++ A+ A G + Sbjct: 610 DYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEHVSAK 669 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKL-------GPEEITRDIPNVSEEGLKNIDECG 880 + ++ H+E E+ R L G + V ++ Sbjct: 670 DSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCYNQRP 729 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 + G V G+IL + + +L A + D + V Sbjct: 730 NVAEGDRVVKGEILGNGPS-MDSGELALGRNVLVAFMTWDGYNYEDAIIM----SERLVK 784 Query: 941 DVRIFNRHGIDKNERSISVE---REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 D + H + + + E + +D LD R+ + + + Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844 Query: 998 GPKGFKKSTVLSSD--LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K T L+++ L+ + + +V + Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIV-------------LDV 891 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMPF+ DG Sbjct: 892 KIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDG 951 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 952 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMA 1011 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 T ++DG Sbjct: 1012 RDAK----------------------------TVLYDG---------------------- 1021 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 +GE FD ++VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1022 ----RSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1077 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LTIKSDDVVGR + YE+IV G E G PESF VL+KE+Q Sbjct: 1078 EMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQ 1137 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPD 1379 +LG+ + + ++ + + D Sbjct: 1138 SLGMDVKMLSADEEEIEMRDMDDD 1161 >gi|258540692|ref|YP_003175191.1| DNA-directed RNA polymerase subunit beta [Lactobacillus rhamnosus Lc 705] gi|257152368|emb|CAR91340.1| DNA-directed RNA polymerase, beta chain [Lactobacillus rhamnosus Lc 705] Length = 1200 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 584/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F Sbjct: 1 MAGHLVNYGKHRTRRSYARIKEVLDLPNLIEIQTNSYQWFL----------DEGLKEMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V++ D Y+ PL +TLRL Sbjct: 51 DIMPIDDFQGKLSLEFVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F + + + ++ Y Sbjct: 102 ETGEIKSQDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFHSETDK---NSRVTY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KDI +VRIDR RK+P+T + ALG S+ +I++ F Sbjct: 159 GTTVIPNRGAWLEYETDAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLM 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE +S + L K + +G Sbjct: 219 LTLEKD-VHKNTDDSRTDEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE + + +TGE+ + G +D + ++++ Sbjct: 278 YKVNKKLSLKTRLLNQVLAETLADPDTGEVLAQKGTKVDRQVMDKLAPYL---------- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 DR D Y+ G ++ +S+ + DK Sbjct: 328 ------------------DRDDFKTVTYQPSDQGVMTDPIELQSIKVYSQVTPDKE---- 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N V+HI D++A + ++L+ G GT+DDID+LGNRR+RSVGE+ Sbjct: 366 -----INLIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTVDDIDHLGNRRIRSVGEL 420 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 421 LQNQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 480 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A Sbjct: 481 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA 540 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 VN YGFIETPYR+V KVT+ + YL+A EE+N +AQANS L++DGSF ++ V R Sbjct: 541 VVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDDTVLAR 600 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 I + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 601 HKDNNIEISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPHA 660 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME A SG A++A AG VE VDA +I +R +G LD Y+LMKF+ Sbjct: 661 PLVGTGMEYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALD-------TYKLMKFK 713 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V +GD V ++IIADGP+ G+LALG+N ++AFM W+ YN+ED+++ Sbjct: 714 RSNAGKNYNQRPIVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIV 773 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEE+E ARDTKLGPEE+TR+IPNV EE LK++DE G++ VGAEV Sbjct: 774 LSERLVKDDVYTSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEV 833 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R Sbjct: 834 RDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRE 893 Query: 949 GID 951 D Sbjct: 894 AGD 896 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 235/1073 (21%), Positives = 381/1073 (35%), Gaps = 104/1073 (9%) Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D + I + E F S+ I + + ++ + Sbjct: 175 DAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRT 234 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 +AL DIY +RPG+ T + S+ FFD +YDL++VGR K+N +L+L T + Sbjct: 235 DEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQV 294 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + L + + + ++ R + ++ Sbjct: 295 L-----------AETLADPDTGEVLAQKGTKVDRQVMDKLAPYLDRDDFKTVTYQPSDQG 343 Query: 491 SSVDI---DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 D S+ + ++ + ++ + S LG Sbjct: 344 VMTDPIELQSIKVYSQVTPDKEINLIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTV 403 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 +R V + + + S+ A V I R V Sbjct: 404 DDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMSIQDTATVTPQQLI--NIRPVVA 461 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + + + L + + + Sbjct: 462 SIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYG 517 Query: 668 PKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 + I + + S V+ + + V ++ + A Sbjct: 518 RMCPIETPEGPNIGLINSLASYAVVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNY 577 Query: 727 IVAKRA----GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 IVA+ VD + + K + C+ Sbjct: 578 IVAQANSPLNDDGSFVDDTVLARHKDNNIEISPDKVDYMDVSPKQVVAVATACIP----- 632 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTS 841 + +D ++ ++ P G E S V + + Sbjct: 633 ----FLENDD--SNRALMGANMQRQAVPLINPHAPLVGTGMEYKAAHDSGTAVLANNAGT 686 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 + + + + + G + + + KN ++ I+ +G V D ++ Sbjct: 687 VEYVDAKQIRVRREDGALDTYKLMKFKRSNAGKNYNQRPIVTIGDHV-DVDEIIADGPAM 745 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 + + + A + D + V D + H + + + Sbjct: 746 QNGELALGQNPIIAFMTWNMYNYEDAIVL----SERLVKDDVYTSIHIEEYESEARDTKL 801 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E+ + + L + G G K T +S R Sbjct: 802 GPEEVTREIPNVGEEALKD--LDEFGVVRVGAEVRDGDILVGKVTPKGVTELSAEERLLH 859 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 F + +V+ + + KI + GD++ PGV +V+V++ K Sbjct: 860 AIFGEKAREVRDTSLRVPHGGGGIIQDV------KIFTREAGDELSPGVNMMVRVYITQK 913 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG VS ++P EDMP+L DGTPVDI L+P+GVPSRMN+GQ+ E HL Sbjct: 914 RKIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVPSRMNIGQVLELHL 973 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A LG + + + D + D+ Sbjct: 974 GMAARNLGIHVATPVFDGANDKDLW----------------------------------- 998 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 A + A + G+S+LYDG TGEPF+ V+VG +Y +KL+H Sbjct: 999 ------------ATVKE-------AGMPSDGKSVLYDGRTGEPFENRVSVGVMYYMKLSH 1039 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 MV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD Sbjct: 1040 MVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDD 1099 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 VVGR + YE+IV G+ + G PESF VLVKE+QALGL + + + + Sbjct: 1100 VVGRVKTYEAIVKGDPIPKPGVPESFRVLVKELQALGLDMKVLGADKQEIELR 1152 >gi|289433612|ref|YP_003463484.1| DNA-directed RNA polymerase beta subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169856|emb|CBH26394.1| DNA-directed RNA polymerase beta subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1184 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 445/963 (46%), Positives = 602/963 (62%), Gaps = 80/963 (8%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 + V G R R+ F + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 5 SGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFL----------DEGLREMFRD 54 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 + PI F+G LEF+ Y+ PK+ V++ RD YA PL++ LRLI K Sbjct: 55 ISPIEDFAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLI---------NKE 105 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 ++K+Q ++MGD PLMT+ GTF+I G +R++VSQL RSPG++F+ G+ +GK + Sbjct: 106 TGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFN---GKLDKNGKKGFG 162 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQ 240 +IP++G W++ E D+KD++HVRIDR RK+PVT L ALG S+ EI+ Sbjct: 163 STVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRN 222 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK-------- 291 + + L+ + GE +++ + L K Sbjct: 223 TLEKDNTDNAEKALL------EIYERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRY 276 Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS 351 + + L +AE +V+ ETGEI GD++D ++L++I + + Sbjct: 277 KINKKLHLKNRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQI------------IPN 324 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 + N R D + L+ ++ P D Sbjct: 325 LENGVGFRTLRPADGVME-DSVLVQSIKIYAPND-------------------------- 357 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 ++N+ N ++V+HI DII+ I +L +G G DDID+LGNRR+RSVGE+L Sbjct: 358 EEKEINIIGNAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELL 417 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQ+R+GL RMER ++ER+S D+ ++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 418 QNQFRIGLSRMERVVRERMSIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP 477 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+ Sbjct: 478 LGELTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAK 537 Query: 592 VNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 VN +GFIETPYR+V +VT+ + YL+A EE+N +AQANS LDE G+FTEE V R Sbjct: 538 VNKFGFIETPYRRVDPGTNRVTDKIDYLTADEEDNYVVAQANSKLDEHGTFTEEEVMARF 597 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 E + V +E+ID++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPL+ EAP Sbjct: 598 RSENLAVEKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAP 657 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVDIYRLMKFQ 768 FVGTGME V AK SGAA+ AK GIVE V+A I +R V D T G+D Y L KF Sbjct: 658 FVGTGMEHVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFV 717 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQ TC NQRP V GD V + +I+ +GPS D G+LALGRN+LVAFM W GYN+ED+++ Sbjct: 718 RSNQGTCYNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAII 777 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEEFE ARDTKLGPEE+TRDIPNV E+ L+++DE GII VGAEV Sbjct: 778 MSERLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEV 837 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 D+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV+IF R Sbjct: 838 KDNDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTRE 897 Query: 949 GID 951 D Sbjct: 898 AGD 900 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 239/1048 (22%), Positives = 378/1048 (36%), Gaps = 114/1048 (10%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D + +N Y+RNTL D + + ALL+IY +RPG+ T A S+ FFD Sbjct: 211 IDLIGDNDYLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVDNARSLLVSRFFDPK---- 266 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 R + + + + + LVD G+ D L R + + Sbjct: 267 ----RYDLASVGRYKINKKLHLKNRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQII 322 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 L+N +G + + SV + S+ + + ++ + + + + Sbjct: 323 PNLEN--GVGFRTLRPADGVMEDSVLVQSIKIYAPNDEEKEINIIGNAYIEENVKHITPS 380 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 S L +G +R V + + + S+ Sbjct: 381 DIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQD 440 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 + I R V + + + L Sbjct: 441 MTTITPQQLI--NIRPVVASIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGG 494 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 E + + + I + + S + + Sbjct: 495 LTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPG 554 Query: 708 APFVGTGMESVVAKSSGAAIVA----KRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 V ++ + A +VA K + + E + Sbjct: 555 TNRVTDKIDYLTADEEDNYVVAQANSKLDEHGTFTEEEVMARFRSENLAVEKERIDYMDV 614 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 K S C+ + +D ++ A+ A G Sbjct: 615 SPKQVVSVATACIP---------FLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEH 665 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDTKL-------GPEEITRDIPNVSEEGLKNI 876 + + ++ H+E E+ R L G + V Sbjct: 666 VSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCY 725 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 ++ + G V G+IL + + +L A + D + Sbjct: 726 NQRPNVAEGDRVVKGEILGNGPS-MDSGELALGRNVLVAFMTWDGYNYEDAIIM----SE 780 Query: 937 GTVVDVRIFNRHGIDKNERSISVE---REQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 V D + H + + + E + +D LD R+ + Sbjct: 781 RLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDN 840 Query: 994 NAVSGPKGFKKSTVLSSD--LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILED 1051 + + G K T L+++ L+ + + +V + Sbjct: 841 DLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIV------------ 888 Query: 1052 RFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPF 1111 KI + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMPF Sbjct: 889 -LDVKIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPF 947 Query: 1112 LKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSF 1171 + DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 948 MPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEE 1007 Query: 1172 LEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDES 1231 T ++DG Sbjct: 1008 AGMARDAK----------------------------TVLYDG------------------ 1021 Query: 1232 GQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGG 1291 +GE FD ++VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GG Sbjct: 1022 --------RSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGG 1073 Query: 1292 QRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLV 1351 QR GEMEVW ++AYGAAY LQE+LTIKSDDVVGR + YE+IV G E G PESF VL+ Sbjct: 1074 QRFGEMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLI 1133 Query: 1352 KEMQALGLSIDLENSRTKNSAKMEEIPD 1379 KE+Q+LG+ + + ++ + + D Sbjct: 1134 KELQSLGMDVKMLSADEEEIEMRDMDDD 1161 >gi|16799362|ref|NP_469630.1| DNA-directed RNA polymerase subunit beta [Listeria innocua Clip11262] gi|20139537|sp|Q92F22|RPOB_LISIN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|16412714|emb|CAC95518.1| RNA polymerase (beta subunit) [Listeria innocua Clip11262] Length = 1184 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 446/963 (46%), Positives = 603/963 (62%), Gaps = 80/963 (8%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 + V G R R+ F + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 5 SGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFL----------DEGLREMFRD 54 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 + PI F+G LEF+ Y+ PK+ V++ RD YA PL++ LRLI K Sbjct: 55 ISPIEDFAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLI---------NKE 105 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 ++K+Q ++MGD PLMT+ GTF+I G +R++VSQL RSPG++F+ G+ +GK + Sbjct: 106 TGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFN---GKLDKNGKKGFG 162 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQ 240 +IP++G W++ E D+KD++HVRIDR RK+PVT L ALG S+ EI+ Sbjct: 163 STVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRN 222 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK-------- 291 + + L+ + GE +++ + L K Sbjct: 223 TLEKDNTDNAEKALL------EIYERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRY 276 Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS 351 + + L +AE +V+ ETGEI GD++D ++L++I + + Sbjct: 277 KINKKLHLKNRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQI------------IPN 324 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 + N R TD + L+ ++ P D Sbjct: 325 LENGVGFRTLRPTDGVME-DSVLVQSIKIYAPND-------------------------- 357 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 ++N+ N ++V+HI DII+ I +L +G G DDID+LGNRR+RSVGE+L Sbjct: 358 DEKEINIIGNAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELL 417 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQ+R+GL RMER ++ER+S D+ ++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 418 QNQFRIGLSRMERVVRERMSIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP 477 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+ Sbjct: 478 LGELTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAK 537 Query: 592 VNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 VN +GFIETPYR+V +VT+ + YL+A EE+N +AQANS LDE G+FTEE V R Sbjct: 538 VNKFGFIETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARF 597 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 E + V +E+ID++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPL+ EAP Sbjct: 598 RSENLAVEKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAP 657 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVDIYRLMKFQ 768 FVGTGME V AK SGAA+ AK GIVE V+A I +R V D T G+D Y L KF Sbjct: 658 FVGTGMEHVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFV 717 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQ TC NQRP V GD V + +I+ +GPS D G+LALGRN+LVAFM W GYN+ED+++ Sbjct: 718 RSNQGTCYNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAII 777 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEEFE ARDTKLGPEE+TRDIPNV E+ L+++DE GII VGAEV Sbjct: 778 MSERLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEV 837 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 D+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV+IF R Sbjct: 838 KDNDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTRE 897 Query: 949 GID 951 D Sbjct: 898 AGD 900 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 246/1044 (23%), Positives = 392/1044 (37%), Gaps = 106/1044 (10%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D + +N Y+RNTL D + + ALL+IY +RPG+ T A S+ FFD +YDL Sbjct: 211 IDLIGDNDYLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVDNARSLLVSRFFDPKRYDL 270 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 ++VGR K+N +L+L + + + LVD G+ D L R + + Sbjct: 271 ASVGRYKINKKLHLK--------NRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQII 322 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 L+N +G + + SV + S+ + + ++ + + + + Sbjct: 323 PNLEN--GVGFRTLRPTDGVMEDSVLVQSIKIYAPNDDEKEINIIGNAYIEENVKHITPS 380 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 S L +G +R V + + + S+ Sbjct: 381 DIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQD 440 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 + I R V + + + L Sbjct: 441 MTTITPQQLI--NIRPVVASIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGG 494 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 E + + + I + + S + + E Sbjct: 495 LTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPE 554 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 V ++ + A +VA+ + + E + S + Sbjct: 555 TNRVTDKIDYLTADEEDNYVVAQANSKL-----DEQGTFTEEEVMARFRSENLAVEKERI 609 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 + + + +D ++ A+ A G + Sbjct: 610 DYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEHVSAK 669 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKL-------GPEEITRDIPNVSEEGLKNIDECG 880 + ++ H+E E+ R L G + V ++ Sbjct: 670 DSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCYNQRP 729 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 + G V G+IL + + +L A + D + V Sbjct: 730 NVAEGDRVVKGEILGNGPS-MDSGELALGRNVLVAFMTWDGYNYEDAIIM----SERLVK 784 Query: 941 DVRIFNRHGIDKNERSISVE---REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 D + H + + + E + +D LD R+ + + + Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844 Query: 998 GPKGFKKSTVLSSD--LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K T L+++ L+ + + +V + Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIV-------------LDV 891 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMPF+ DG Sbjct: 892 KIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDG 951 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 952 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMA 1011 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 T ++DG Sbjct: 1012 RDAK----------------------------TVLYDG---------------------- 1021 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 +GE FD ++VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1022 ----RSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1077 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LTIKSDDVVGR + YE+IV G E G PESF VL+KE+Q Sbjct: 1078 EMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQ 1137 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPD 1379 +LG+ + + ++ + + D Sbjct: 1138 SLGMDVKMLSADEEEIEMRDMDDD 1161 >gi|90961179|ref|YP_535095.1| DNA-directed RNA polymerase subunit beta [Lactobacillus salivarius UCC118] gi|227891884|ref|ZP_04009689.1| DNA-directed RNA polymerase subunit beta [Lactobacillus salivarius ATCC 11741] gi|122449388|sp|Q1WVA5|RPOB_LACS1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|90820373|gb|ABD99012.1| DNA-directed RNA polymerase beta chain [Lactobacillus salivarius UCC118] gi|227866347|gb|EEJ73768.1| DNA-directed RNA polymerase subunit beta [Lactobacillus salivarius ATCC 11741] Length = 1199 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 429/966 (44%), Positives = 593/966 (61%), Gaps = 84/966 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G RVR+ + + E++D+P+LIEVQ SY FL +EGL+ F Sbjct: 4 LAGHLVKYGKHRVRRSYSRIKEVLDLPNLIEVQTDSYKWFL----------DEGLREMFD 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V++ D Y+ PL +TLRLI Sbjct: 54 DIMPIEDFQGKLSLEFVDYQLLEPKYTVEEARQHDANYSAPLHVTLRLI---------NH 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F+ + + +G+ Y Sbjct: 105 ETGEIKSQDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFNSELDK---NGRTNY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE----EILSTFYPKI 236 +IP++G W++ E D+K++ +VRIDR RK+P+T + ALG S+ EIL + + Sbjct: 162 GTTVIPNRGAWLEYETDAKNVAYVRIDRTRKIPLTELIRALGYGSDNEIVEILGSNSDSL 221 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKF 295 + + D + D V + + GE +S + L + K + Sbjct: 222 MLTLEKDVHK---NMDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLAP 278 Query: 296 LGITS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL 347 +G L L VAE + + +TGEI + +VID++ ++++ RD Sbjct: 279 VGRYKINKKLDLKTRLLNLTVAETLADPDTGEIIVNKDEVIDKQVMDKLAPYLARDDFKT 338 Query: 348 YVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYD 407 + + ++ + L I +V P D Sbjct: 339 FTFHPSEEGVVQEPMT-----------LQIVKVYSPKDP--------------------- 366 Query: 408 LSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSV 467 +N+ N + +HI DI+A + +L+ G G+ DDID+LGNRR RSV Sbjct: 367 -----EKVVNVIGNANVDIQFKHITPADIVASMNYFFNLQEGMGSTDDIDHLGNRRTRSV 421 Query: 468 GEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEE 527 GE+L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 422 GELLQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMD 481 Query: 528 HVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 N L ++H RR SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ Sbjct: 482 QTNPLGELSHKRRFSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLS 541 Query: 588 SFARVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELV 645 S+AR+N YGF+ETPYR+V KVT+ + YL+A EE+N IAQANS L++DGSF +++V Sbjct: 542 SYARINKYGFVETPYRRVSWETHKVTDKIDYLTADEEDNYVIAQANSPLNDDGSFVDDVV 601 Query: 646 FCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 R +++ + EK+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+K Sbjct: 602 MARKKDDDVEISTEKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIK 661 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 AP VGTG+E A SG A++++ G VE VDA I +R +G LD Y+LM Sbjct: 662 PHAPLVGTGIEYKAAHDSGVALISEHEGTVEYVDAREIRVRRDDGSLDK-------YKLM 714 Query: 766 KFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 KF RSN NQ P+V+VGD V ++++ADGP+ + G+LALG+N L+AFM W GYNFED Sbjct: 715 KFHRSNGGKNYNQTPIVRVGDRVDADEVLADGPAMENGELALGQNPLIAFMTWDGYNFED 774 Query: 826 SMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVG 885 ++ I+ER+V EDV+TSIHIEE E ARDTKLGPEEITR+IPNV E+ LKN+DE GII +G Sbjct: 775 AIAINERLVKEDVYTSIHIEEHESEARDTKLGPEEITREIPNVGEDALKNLDEFGIIRIG 834 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 AEV GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF Sbjct: 835 AEVKDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVQDVKIF 894 Query: 946 NRHGID 951 R G D Sbjct: 895 TREGGD 900 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 238/1083 (21%), Positives = 385/1083 (35%), Gaps = 120/1083 (11%) Query: 306 LYVAEDIVNGETG----EIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 VA ++ E+ G D + +E + + + L D Sbjct: 180 KNVAYVRIDRTRKIPLTELIRALGYGSDNEIVEILGSNSDSLMLTLEKDV---------- 229 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 + +++L DIY +RPG+ T + S+ FFD +YDL+ VGR K+N +L Sbjct: 230 HKNMDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLAPVGRYKINKKL- 288 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 D + ++ + +A + N ID + + + Sbjct: 289 -DLKTRLLNLTVAETLADPDTGEIIVNKDEVIDKQVMDKLAPYLARDDFKTFTFHPSEEG 347 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 + + P+ ++N + Q + S Sbjct: 348 VVQEPMTLQIVKVYSPKDPEKVVNVIGNANVDI------QFKHITPADIVASMNYFFNLQ 401 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 +G R V + + + S+ + V I Sbjct: 402 EGMGSTDDIDHLGNRRTRSVGELLQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLI--N 459 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 R V + + + L + + Sbjct: 460 IRPVVASIK----EFFGSSQLSQFMDQTNPLGELSHKRRFSALGPGGLTRDRAGYEVRDV 515 Query: 662 DFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + + I + + S + + E V ++ + A Sbjct: 516 HYTHYGRMCPIETPEGPNIGLINSLSSYARINKYGFVETPYRRVSWETHKVTDKIDYLTA 575 Query: 721 KSSGAAIVAKRA----GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 ++A+ VD + + + + + + K + C+ Sbjct: 576 DEEDNYVIAQANSPLNDDGSFVDDVVMARKKDDDVEISTEKVDYMDVSPKQVVAVATACI 635 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 + +D ++ A+ A + G ++ + ++SE Sbjct: 636 P---------FLENDDSNRALMGANMQRQAVPLIKPHAPLVGTGIEYKAAHDSGVALISE 686 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 T +++ E+ R ++ + S G KN ++ I+ VG V D ++ Sbjct: 687 HEGTVEYVDAREIRVRRDDGSLDKYKLMKFHRSNGG-KNYNQTPIVRVGDRV-DADEVLA 744 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 + + L A + D V V H + + Sbjct: 745 DGPAMENGELALGQNPLIAFMTWDGYNFEDAIAINERLVKEDVYTSIHIEEHESEARDTK 804 Query: 957 ISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 + E +I + D DE I+ + +IL G+ G L Sbjct: 805 LGPEEITREIPNVGEDALKNLDEFGIIRIGAEVKDGDILVGKVTPKGVTELSAEERLLHA 864 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVL 1071 + E R +V+ + + KI + GD++ PGV Sbjct: 865 IFGEKAR-----------EVRDTSLRVPHGAGGIVQDV------KIFTREGGDELSPGVN 907 Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131 +V+V++A KR +Q GDKMAGRHGNKG VS ++P EDMPF+ DGTP+DI+L+P+GVPSRM Sbjct: 908 MMVRVYIAQKRKLQVGDKMAGRHGNKGTVSVVIPEEDMPFMPDGTPIDIMLSPMGVPSRM 967 Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191 N+GQ+ + HLG A LG + S + D + DI Sbjct: 968 NIGQVLDLHLGMAARKLGIHVASPVFDGARDEDIWSALQEAGLPGDGK------------ 1015 Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251 T ++DG TGE FD + V Sbjct: 1016 ----------------TVLYDG--------------------------RTGEAFDNRIAV 1033 Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311 G +Y LKL HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY L Sbjct: 1034 GVMYYLKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1093 Query: 1312 QEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNS 1371 QE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+QALG+ + + ++ Sbjct: 1094 QEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGMDMKVLDADKNEI 1153 Query: 1372 AKM 1374 Sbjct: 1154 ELR 1156 >gi|149183751|ref|ZP_01862157.1| DNA-directed RNA polymerase subunit beta [Bacillus sp. SG-1] gi|148848537|gb|EDL62781.1| DNA-directed RNA polymerase subunit beta [Bacillus sp. SG-1] Length = 1177 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 437/956 (45%), Positives = 603/956 (63%), Gaps = 79/956 (8%) Query: 9 GLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF 68 G R R+ F + E++D+P+LIE+Q +SY FL +EGL+ F+ + PI F Sbjct: 1 GRHRQRRSFARISEVLDLPNLIEIQTSSYQWFL----------DEGLREMFRDISPIEDF 50 Query: 69 SGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +G LEF+ Y PK+ V++ RD+TY+ PL++ +RL+ K ++K+Q Sbjct: 51 TGNLSLEFIDYSLGEPKYSVEESKERDVTYSAPLRVKVRLL---------NKETGEVKDQ 101 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT GTFVI G +R++VSQL RSP ++F G+ +GK + +IP++ Sbjct: 102 DVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFS---GKMDKNGKKGFTATVIPNR 158 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ E D+KD++HVRIDR RK+PVT L ALG S+ EI+ + Sbjct: 159 GAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNEYIRNTLEKDNT 218 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK--------FLGI 298 L+ + GE +E+ K L K + Sbjct: 219 EGIEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKMNKKLH 272 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + L G +AE + + ETGEI E G V+D ++L++I IP L N Sbjct: 273 IKNRLFGQTLAETLADPETGEIVAEKGTVLDRRALDKI-------IPYL------ENGIG 319 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 T +D +L ++ P + G ++N+ Sbjct: 320 FKTYQQSGGVLEEDVVLQSIKIYSPNEE-------------------------GEKEINI 354 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 N +++++I DII+ I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 355 ISNAFVEEEIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIG 414 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N L+ +TH Sbjct: 415 LSRMERVVRERMSIQDANTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHK 474 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+VN +GFI Sbjct: 475 RRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGFI 534 Query: 599 ETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 ETPYR+V GKVTN + YL+A EE+N +AQAN+ L +DGSF ++ V R GE +V Sbjct: 535 ETPYRRVDPDTGKVTNRMDYLTADEEDNYVVAQANARLSDDGSFLDDEVIARFRGENTVV 594 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 RE+ID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+P VGTGME Sbjct: 595 KRERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPESPIVGTGME 654 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG-DLDPSTSGVDIYRLMKFQRSNQNTC 775 V AK SGAA++ + GIVE+V+A ++ +R ++ D +D YR+ KF RSNQ TC Sbjct: 655 HVSAKDSGAAVICRHEGIVERVEAKQVWVRQIKEIDGQEVKGDLDKYRMQKFIRSNQGTC 714 Query: 776 VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835 NQRP+V GD V + +I+ADGPS + G+LALGRN++V FM W GYN+ED++++SER+V Sbjct: 715 YNQRPIVSEGDRVTKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAIIMSERLVK 774 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 +DV+TSIHIEE+E +RDTKLGPEEITRDIPNV E+ L+N+DE GII +GAEV GD+LV Sbjct: 775 DDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDLLV 834 Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 GK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR D Sbjct: 835 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGD 890 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 178/533 (33%), Positives = 254/533 (47%), Gaps = 78/533 (14%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + R + ++ I+ G V G+IL + + + ++ Sbjct: 696 GDLDKYRMQKFIRSNQGTCYNQRPIVSEGDRVTKGEILADGPS-MEKGELALGRNVMVGF 754 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + D + V V + + + + E I + D Sbjct: 755 MTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGEDALRN 814 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ + ++L G+ G L + E R +++ Sbjct: 815 LDERGIIRIGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKARE-VRDTSLRVPHG 873 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 + K+ + GD++PPGV ++V+ ++ KR I GDKMA Sbjct: 874 GGGI----------------VLDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKMA 917 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SRILP EDMPFL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG Sbjct: 918 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGIH 977 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 + S + D D+ Sbjct: 978 VASPVFDGAREEDVW--------------------------------------------- 992 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 A E A + +++LYDG TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 993 --ATIEE-------AGMARDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARS 1043 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+ Sbjct: 1044 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEA 1103 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 IV G + E G PESF VL+KE+Q+LG+ + + +S + M ++ D + + Sbjct: 1104 IVKGENVPEPGVPESFKVLIKELQSLGMDVKILSSNDEEIE-MRDLEDEEESQ 1155 >gi|217965646|ref|YP_002351324.1| DNA-directed RNA polymerase, beta subunit [Listeria monocytogenes HCC23] gi|255025581|ref|ZP_05297567.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes FSL J2-003] gi|290892599|ref|ZP_06555592.1| RNA polymerase [Listeria monocytogenes FSL J2-071] gi|254765293|sp|B8DEY8|RPOB_LISMH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|217334916|gb|ACK40710.1| DNA-directed RNA polymerase, beta subunit [Listeria monocytogenes HCC23] gi|290557908|gb|EFD91429.1| RNA polymerase [Listeria monocytogenes FSL J2-071] gi|307569805|emb|CAR82984.1| DNA-directed RNA polymerase, beta subunit [Listeria monocytogenes L99] Length = 1184 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 446/963 (46%), Positives = 603/963 (62%), Gaps = 80/963 (8%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 + V G R R+ F + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 5 SGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFL----------DEGLREMFRD 54 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 + PI F+G LEF+ Y+ PK+ V++ RD YA PL++ LRLI K Sbjct: 55 ISPIEDFAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLI---------NKE 105 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 ++K+Q ++MGD PLMT+ GTF+I G +R++VSQL RSPG++F+ G+ +GK + Sbjct: 106 TGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFN---GKLDKNGKKGFG 162 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQ 240 +IP++G W++ E D+KD++HVRIDR RK+PVT L ALG S+ EI+ Sbjct: 163 STVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRN 222 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK-------- 291 + + L+ + GE +++ + L K Sbjct: 223 TLEKDNTDNAEKALL------EIYERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRY 276 Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS 351 + + L +AE +V+ ETGEI GD++D ++L++I + + Sbjct: 277 KINKKLHLKNRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQI------------IPN 324 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 + N R TD + L+ ++ P D Sbjct: 325 LENGVGFRTLRPTDGVME-DSVLVQSIKIYAPND-------------------------- 357 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 ++N+ N ++V+HI DII+ I +L +G G DDID+LGNRR+RSVGE+L Sbjct: 358 DEKEINIIGNAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELL 417 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQ+R+GL RMER ++ER+S D+ ++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 418 QNQFRIGLSRMERVVRERMSIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP 477 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+ Sbjct: 478 LGELTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAK 537 Query: 592 VNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 VN +GFIETPYR+V +VT+ + YL+A EE+N +AQANS LDE G+FTEE V R Sbjct: 538 VNKFGFIETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARF 597 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 E + V +E+ID++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPL+ EAP Sbjct: 598 RSENLAVEKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAP 657 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVDIYRLMKFQ 768 FVGTGME V AK SGAA+ AK GIVE V+A I +R V D T G+D Y L KF Sbjct: 658 FVGTGMEHVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFV 717 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQ TC NQRP V GD V + +I+ +GPS D G+LALGRN+LVAFM W GYN+ED+++ Sbjct: 718 RSNQGTCYNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAII 777 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEEFE ARDTKLGPEE+TRDIPNV E+ L+++DE GII VGAEV Sbjct: 778 MSERLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEV 837 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 D+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV+IF R Sbjct: 838 KDNDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTRE 897 Query: 949 GID 951 D Sbjct: 898 AGD 900 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 246/1044 (23%), Positives = 392/1044 (37%), Gaps = 106/1044 (10%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D + +N Y+RNTL D + + ALL+IY +RPG+ T A S+ FFD +YDL Sbjct: 211 IDLIGDNDYLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVDNARSLLVSRFFDPKRYDL 270 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 ++VGR K+N +L+L + + + LVD G+ D L R + + Sbjct: 271 ASVGRYKINKKLHLK--------NRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQII 322 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 L+N +G + + SV + S+ + + ++ + + + + Sbjct: 323 PNLEN--GVGFRTLRPTDGVMEDSVLVQSIKIYAPNDDEKEINIIGNAYIEENVKHITPS 380 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 S L +G +R V + + + S+ Sbjct: 381 DIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQD 440 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 + I R V + + + L Sbjct: 441 MTTITPQQLI--NIRPVVASIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGG 494 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 E + + + I + + S + + E Sbjct: 495 LTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPE 554 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 V ++ + A +VA+ + + E + S + Sbjct: 555 TNRVTDKIDYLTADEEDNYVVAQANSKL-----DEQGTFTEEEVMARFRSENLAVEKERI 609 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 + + + +D ++ A+ A G + Sbjct: 610 DYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEHVSAK 669 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKL-------GPEEITRDIPNVSEEGLKNIDECG 880 + ++ H+E E+ R L G + V ++ Sbjct: 670 DSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCYNQRP 729 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 + G V G+IL + + +L A + D + V Sbjct: 730 NVAEGDRVVKGEILGNGPS-MDSGELALGRNVLVAFMTWDGYNYEDAIIM----SERLVK 784 Query: 941 DVRIFNRHGIDKNERSISVE---REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 D + H + + + E + +D LD R+ + + + Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844 Query: 998 GPKGFKKSTVLSSD--LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K T L+++ L+ + + +V + Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIV-------------LDV 891 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMPF+ DG Sbjct: 892 KIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDG 951 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 952 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMA 1011 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 T ++DG Sbjct: 1012 RDAK----------------------------TILYDG---------------------- 1021 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 +GE FD ++VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1022 ----RSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1077 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LTIKSDDVVGR + YE+IV G E G PESF VL+KE+Q Sbjct: 1078 EMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQ 1137 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPD 1379 +LG+ + + ++ + + D Sbjct: 1138 SLGMDVKMLSADEEEIEMRDMDDD 1161 >gi|258509493|ref|YP_003172244.1| DNA-directed RNA polymerase subunit beta [Lactobacillus rhamnosus GG] gi|257149420|emb|CAR88393.1| DNA-directed RNA polymerase, beta chain [Lactobacillus rhamnosus GG] Length = 1200 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 584/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F Sbjct: 1 MAGHLVNYGKHRTRRSYARIKEVLDLPNLIEIQTNSYQWFL----------DEGLKEMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V++ D Y+ PL +TLRL Sbjct: 51 DIMPIDDFQGKLSLEFVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F + + + ++ Y Sbjct: 102 ETGEIKSQDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFHSETDK---NSRVTY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KDI +VRIDR RK+P+T + ALG S+ +I++ F Sbjct: 159 GTTVIPNRGAWLEYETDAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLM 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE +S + L K + +G Sbjct: 219 LTLEKD-VHKNTDDSRTDEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE + + +TGE+ + G +D + ++++ Sbjct: 278 YKVNKKLSLKTRLLNQVLAETLADPDTGEVVAQKGTKVDRQVMDKLAPYL---------- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 DR D Y+ G ++ +S+ + DK Sbjct: 328 ------------------DRDDFKTATYQPSDQGVMTDPIELQSIKVYSQVTPDKE---- 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N V+HI D++A + ++L+ G GT+DDID+LGNRR+RSVGE+ Sbjct: 366 -----INLIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTVDDIDHLGNRRIRSVGEL 420 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 421 LQNQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 480 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A Sbjct: 481 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA 540 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 VN YGFIETPYR+V KVT+ + YL+A EE+N +AQANS L++DGSF ++ V R Sbjct: 541 VVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDDTVLAR 600 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 I + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 601 HKDNNIEISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPHA 660 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME A SG A++A AG VE VDA +I +R +G LD Y+LMKF+ Sbjct: 661 PLVGTGMEYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALD-------TYKLMKFK 713 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V +GD V ++IIADGP+ G+LALG+N ++AFM W+ YN+ED+++ Sbjct: 714 RSNAGKNYNQRPIVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIV 773 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEE+E ARDTKLGPEE+TR+IPNV EE LK++DE G++ VGAEV Sbjct: 774 LSERLVKDDVYTSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEV 833 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R Sbjct: 834 RDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRE 893 Query: 949 GID 951 D Sbjct: 894 AGD 896 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 235/1073 (21%), Positives = 380/1073 (35%), Gaps = 104/1073 (9%) Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D + I + E F S+ I + + ++ + Sbjct: 175 DAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRT 234 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 +AL DIY +RPG+ T + S+ FFD +YDL++VGR K+N +L+L T + Sbjct: 235 DEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQV 294 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + L + + + ++ R ++ Sbjct: 295 L-----------AETLADPDTGEVVAQKGTKVDRQVMDKLAPYLDRDDFKTATYQPSDQG 343 Query: 491 SSVDI---DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 D S+ + ++ + ++ + S LG Sbjct: 344 VMTDPIELQSIKVYSQVTPDKEINLIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTV 403 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 +R V + + + S+ A V I R V Sbjct: 404 DDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMSIQDTATVTPQQLI--NIRPVVA 461 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + + + L + + + Sbjct: 462 SIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYG 517 Query: 668 PKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 + I + + S V+ + + V ++ + A Sbjct: 518 RMCPIETPEGPNIGLINSLASYAVVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNY 577 Query: 727 IVAKRA----GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 IVA+ VD + + K + C+ Sbjct: 578 IVAQANSPLNDDGSFVDDTVLARHKDNNIEISPDKVDYMDVSPKQVVAVATACIP----- 632 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTS 841 + +D ++ ++ P G E S V + + Sbjct: 633 ----FLENDD--SNRALMGANMQRQAVPLINPHAPLVGTGMEYKAAHDSGTAVLANNAGT 686 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 + + + + + G + + + KN ++ I+ +G V D ++ Sbjct: 687 VEYVDAKQIRVRREDGALDTYKLMKFKRSNAGKNYNQRPIVTIGDHV-DVDEIIADGPAM 745 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 + + + A + D + V D + H + + + Sbjct: 746 QNGELALGQNPIIAFMTWNMYNYEDAIVL----SERLVKDDVYTSIHIEEYESEARDTKL 801 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E+ + + L + G G K T +S R Sbjct: 802 GPEEVTREIPNVGEEALKD--LDEFGVVRVGAEVRDGDILVGKVTPKGVTELSAEERLLH 859 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 F + +V+ + + KI + GD++ PGV +V+V++ K Sbjct: 860 AIFGEKAREVRDTSLRVPHGGGGIIQDV------KIFTREAGDELSPGVNMMVRVYITQK 913 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG VS ++P EDMP+L DGTPVDI L+P+GVPSRMN+GQ+ E HL Sbjct: 914 RKIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVPSRMNIGQVLELHL 973 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A LG + + + D + D+ Sbjct: 974 GMAARNLGIHVATPVFDGANDKDLW----------------------------------- 998 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 A + A + G+S+LYDG TGEPF+ V+VG +Y +KL+H Sbjct: 999 ------------ATVKE-------AGMPSDGKSVLYDGRTGEPFENRVSVGVMYYMKLSH 1039 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 MV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD Sbjct: 1040 MVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDD 1099 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 VVGR + YE+IV G+ + G PESF VLVKE+QALGL + + + + Sbjct: 1100 VVGRVKTYEAIVKGDPIPKPGVPESFRVLVKELQALGLDMKVLGADKQEIELR 1152 >gi|323705653|ref|ZP_08117227.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535130|gb|EGB24907.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 1237 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 440/951 (46%), Positives = 597/951 (62%), Gaps = 64/951 (6%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + E++D+P+LIEVQK SY FL EGL+ F+ + PI +F+G Sbjct: 12 RMSFARIEEVLDMPNLIEVQKNSYKWFL----------EEGLREVFRDISPIESFTGNLS 61 Query: 74 LEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LEF+ Y+ D PK+ V++C RD TYA P+K+ +RL + +IKE ++M Sbjct: 62 LEFLDYKLDDNPKYSVEECKDRDTTYAAPMKVKVRLT---------NRDTGEIKESEVFM 112 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 GD PLMT GTF+I G +R++VSQL RSPG++++ + GK L+ +IP++G W+ Sbjct: 113 GDFPLMTDKGTFIINGAERVIVSQLVRSPGVYYEQQFDKL---GKKLFFATVIPNRGAWL 169 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + E DS DI VRIDR RKVP+T FL ALG ++ +IL F D Sbjct: 170 EYEEDSNDIFSVRIDRTRKVPITVFLRALGYGTDAQILDLFGEDERIKATLDKDTTKSEE 229 Query: 252 ADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD--------C 302 L+ + GE +ES K L L K + +G Sbjct: 230 EGLL------EVYKRLRPGEPPTVESAKSLLYSLFFDPKRYDLAHVGRYKFNKKLALSSR 283 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L A IVN TGEI +E G I ++ ++I I ++ +L I Sbjct: 284 LTNQKAATKIVNPLTGEIIVEEGQRISRETAKKIQDCGINEVEVL---VEGRPVKIIGNN 340 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D N+ + ++ + +V + + N + + + ++ RL+ Sbjct: 341 TVDINEYPLSFDV---SDLKIKEKVHLTVLKEILNNFSSEDEI-------KNEIRRRLDE 390 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 P +HI K+DIIA + ++L G G +DDID+LGNRR+RSVGE+L+NQ+R+GL RM Sbjct: 391 LIP---KHITKDDIIASVNYNLNLSYGVGFVDDIDHLGNRRLRSVGELLQNQFRIGLSRM 447 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER ++ER++ D+ + Q+LIN +PVV+A+ EFF SSQLSQ + N L+ +TH RRLS Sbjct: 448 ERVVRERMTIQDVSEITAQNLINIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLS 507 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG+E+RDVH THY R+CP ET EG NIGL+ SL ++AR+N YGFIE PY Sbjct: 508 ALGPGGLSRERAGMEVRDVHHTHYSRMCPIETPEGPNIGLIGSLATYARINEYGFIEAPY 567 Query: 603 RKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 RKV KV N++VY++A E+ IAQA+ LDE+ F E V R + + VPRE+ Sbjct: 568 RKVDKSTGKVLNEIVYMTADVEDEYVIAQADEPLDEENRFINERVTVRSKDDILSVPREE 627 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +DF+D SPKQVVS+A ++IPFLENDD+NR LMG NM+RQAVPLL +AP VGTG+E A Sbjct: 628 VDFMDVSPKQVVSVATAMIPFLENDDANRALMGSNMRRQAVPLLVPQAPIVGTGIEYKAA 687 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SG +A+ +GIVE+V A +IVI++ +G D Y L+KF+RSNQ TC+N RP Sbjct: 688 RDSGVVNIARNSGIVERVTADKIVIKTDDGRRDE-------YELLKFKRSNQGTCINCRP 740 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V GD V + +I+DGPST+LG++ALGRN+LV FMPW GYN+ED++LISE +V ED T Sbjct: 741 IVNEGDRVEKGQVISDGPSTELGEIALGRNVLVGFMPWEGYNYEDAILISEELVKEDALT 800 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE+E ARDTKLGPEEITRDIPNV EE LK++DE GII +GAEV GDILVGK+TP Sbjct: 801 SIHIEEYESEARDTKLGPEEITRDIPNVGEEALKDLDERGIIRIGAEVTAGDILVGKVTP 860 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G G VVDV+++ R D Sbjct: 861 KGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEGGIVVDVKVYTRENGD 911 Score = 463 bits (1190), Expect = e-127, Method: Composition-based stats. Identities = 241/1062 (22%), Positives = 380/1062 (35%), Gaps = 137/1062 (12%) Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D + I+ TL D K ++ LL++Y+ +RPG+ T A+S+ LFFD +YDL+ Sbjct: 208 DLFGEDERIKATLDKDTTKSEEEGLLEVYKRLRPGEPPTVESAKSLLYSLFFDPKRYDLA 267 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 VGR K N +L L + +V+ G+ +++ + + + + Sbjct: 268 HVGRYKFNKKLALS--------SRLTNQKAATKIVNPLTGEIIVEEGQRISRETAKKIQD 319 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 N+ + + I + + + D+ + K + E + L ++ + Sbjct: 320 CGINEVEVLVEGRPVKIIGNNTVDINEYPLSFDVSDLK-----IKEKVHLTVLKEILNNF 374 Query: 530 NSLSRITH--TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 +S I + RRL L + + + YG + N L S+ Sbjct: 375 SSEDEIKNEIRRRLDELIPKHITKDDIIASVNYNLNLSYGVGFVDDIDHLGNRRLR-SVG 433 Query: 588 SFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENR--YIA-----QANSSLDEDGSF 640 + + R V + DV ++A N +A +S L + Sbjct: 434 ELLQNQFRIGLSRMERVVRERMTIQDVSEITAQNLINIRPVVAAIKEFFGSSQLSQFMDQ 493 Query: 641 TEELVFCRCAG------------EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSN 688 T L E + + S + L + Sbjct: 494 TNPLAELTHKRRLSALGPGGLSRERAGMEVRDVHHTHYSRMCPIETPEGPNIGLIGSLAT 553 Query: 689 RVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV 748 + ++A V V+ + + ++ Q D Sbjct: 554 YARI------NEYGFIEAPYRKVDKSTGKVLNEIVYMTADVEDEYVIAQADEPLDEENRF 607 Query: 749 EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALG 808 + S DI + + + + Q V + A+ Sbjct: 608 INERVTVRSKDDILSVPREEVDFMDVSPKQVVSVATAMIPFLENDDANRALMGSNMRRQA 667 Query: 809 RNMLVAFMPWHGYNFE---------DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPE 859 +LV P G E ++ + +V I I T G Sbjct: 668 VPLLVPQAPIVGTGIEYKAARDSGVVNIARNSGIVERVTADKIVI--------KTDDGRR 719 Query: 860 EITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGE 919 + + I+ I+ G V G ++ + + + +L Sbjct: 720 DEYELLKFKRSNQGTCINCRPIVNEGDRVEKGQVISDGPSTEL-GEIALGRNVLVGFMPW 778 Query: 920 KAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER------EQIELLARDKDD 973 + + D L V + + + + + E E +D D Sbjct: 779 EGYNYEDAILISEELVKEDALTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKDL-D 837 Query: 974 EQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQR 1033 E+ I+ +IL G+ G L + E R Sbjct: 838 ERGIIRIGAEVTAGDILVGKVTPKGETELTAEERLLRAIFGEKAR--------------- 882 Query: 1034 NVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGR 1093 E K+ + GD++PPGV +V+VF+A KR I GDKMAGR Sbjct: 883 --EVRDTSLRVPHGEGGIVVDVKVYTRENGDELPPGVNEMVRVFIAQKRKISVGDKMAGR 940 Query: 1094 HGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIK 1153 HGNK GV SR+ ++ Sbjct: 941 HGNK----------------------------GVVSRI------------------LPVE 954 Query: 1154 SLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDG 1213 + L+ + +++ V G ++TPVFDG Sbjct: 955 DMPFLPDGTP--------LQICLNPLGVPSRMNIGQVLEVHLGLAAKALGWYMATPVFDG 1006 Query: 1214 ADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTG 1273 A EE I +L A G+ LYDG TGEPFD PVTVGY+YMLKL+H+V DK++ARSTG Sbjct: 1007 AHEEDIQELLEKAGFSPDGKIQLYDGRTGEPFDHPVTVGYMYMLKLHHLVDDKMHARSTG 1066 Query: 1274 SYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIV 1333 YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDD+ GR + YESIV Sbjct: 1067 PYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDITGRVKTYESIV 1126 Query: 1334 AGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME 1375 G + E G PESF VLVKE+Q+L L + + + A E Sbjct: 1127 KGENIPEPGVPESFKVLVKELQSLCLDVKVLTEDNQEVALKE 1168 >gi|16802304|ref|NP_463789.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes EGD-e] gi|46906495|ref|YP_012884.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes str. 4b F2365] gi|47096519|ref|ZP_00234110.1| DNA-directed RNA polymerase, beta subunit [Listeria monocytogenes str. 1/2a F6854] gi|224498893|ref|ZP_03667242.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes Finland 1988] gi|224502448|ref|ZP_03670755.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes FSL R2-561] gi|226222889|ref|YP_002756996.1| RNA polymerase (beta subunit) [Listeria monocytogenes Clip81459] gi|254825695|ref|ZP_05230696.1| RNA polymerase subunit beta [Listeria monocytogenes FSL J1-194] gi|254828718|ref|ZP_05233405.1| RNA polymerase [Listeria monocytogenes FSL N3-165] gi|254831920|ref|ZP_05236575.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes 10403S] gi|254853472|ref|ZP_05242820.1| RNA polymerase [Listeria monocytogenes FSL R2-503] gi|254900554|ref|ZP_05260478.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes J0161] gi|254913495|ref|ZP_05263507.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes J2818] gi|254937924|ref|ZP_05269621.1| RNA polymerase subunit beta [Listeria monocytogenes F6900] gi|284800555|ref|YP_003412420.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes 08-5578] gi|284993741|ref|YP_003415509.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes 08-5923] gi|300764614|ref|ZP_07074606.1| DNA-directed RNA polymerase, beta subunit [Listeria monocytogenes FSL N1-017] gi|20139836|sp|Q9RLT9|RPOB_LISMO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|67461457|sp|Q724F0|RPOB_LISMF RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|259494187|sp|C1KYJ3|RPOB_LISMC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|6002201|emb|CAB56706.1| DNA-dependent RNA polymerase subunit beta [Listeria monocytogenes] gi|16409623|emb|CAD00785.1| RNA polymerase (beta subunit) [Listeria monocytogenes EGD-e] gi|46879759|gb|AAT03061.1| DNA-directed RNA polymerase, beta subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47015110|gb|EAL06052.1| DNA-directed RNA polymerase, beta subunit [Listeria monocytogenes str. 1/2a F6854] gi|225875351|emb|CAS04048.1| RNA polymerase (beta subunit) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601123|gb|EEW14448.1| RNA polymerase [Listeria monocytogenes FSL N3-165] gi|258606844|gb|EEW19452.1| RNA polymerase [Listeria monocytogenes FSL R2-503] gi|258610533|gb|EEW23141.1| RNA polymerase subunit beta [Listeria monocytogenes F6900] gi|284056117|gb|ADB67058.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes 08-5578] gi|284059208|gb|ADB70147.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes 08-5923] gi|293591503|gb|EFF99837.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes J2818] gi|293594939|gb|EFG02700.1| RNA polymerase subunit beta [Listeria monocytogenes FSL J1-194] gi|300514721|gb|EFK41776.1| DNA-directed RNA polymerase, beta subunit [Listeria monocytogenes FSL N1-017] Length = 1184 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 446/963 (46%), Positives = 603/963 (62%), Gaps = 80/963 (8%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 + V G R R+ F + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 5 SGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFL----------DEGLREMFRD 54 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 + PI F+G LEF+ Y+ PK+ V++ RD YA PL++ LRLI K Sbjct: 55 ISPIEDFAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLI---------NKE 105 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 ++K+Q ++MGD PLMT+ GTF+I G +R++VSQL RSPG++F+ G+ +GK + Sbjct: 106 TGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFN---GKLDKNGKKGFG 162 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQ 240 +IP++G W++ E D+KD++HVRIDR RK+PVT L ALG S+ EI+ Sbjct: 163 STVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRN 222 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK-------- 291 + + L+ + GE +++ + L K Sbjct: 223 TLEKDNTDNAEKALL------EIYERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRY 276 Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS 351 + + L +AE +V+ ETGEI GD++D ++L++I + + Sbjct: 277 KINKKLHLKNRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQI------------IPN 324 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 + N R TD + L+ ++ P D Sbjct: 325 LENGVGFRTLRPTDGVME-DSVLVQSIKIYAPND-------------------------- 357 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 ++N+ N ++V+HI DII+ I +L +G G DDID+LGNRR+RSVGE+L Sbjct: 358 EEKEINIIGNAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELL 417 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQ+R+GL RMER ++ER+S D+ ++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 418 QNQFRIGLSRMERVVRERMSIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP 477 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+ Sbjct: 478 LGELTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAK 537 Query: 592 VNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 VN +GFIETPYR+V +VT+ + YL+A EE+N +AQANS LDE G+FTEE V R Sbjct: 538 VNKFGFIETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARF 597 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 E + V +E+ID++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPL+ EAP Sbjct: 598 RSENLAVEKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAP 657 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVDIYRLMKFQ 768 FVGTGME V AK SGAA+ AK GIVE V+A I +R V D T G+D Y L KF Sbjct: 658 FVGTGMEHVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFV 717 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQ TC NQRP V GD V + +I+ +GPS D G+LALGRN+LVAFM W GYN+ED+++ Sbjct: 718 RSNQGTCYNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAII 777 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEEFE ARDTKLGPEE+TRDIPNV E+ L+++DE GII VGAEV Sbjct: 778 MSERLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEV 837 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 D+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV+IF R Sbjct: 838 KDNDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTRE 897 Query: 949 GID 951 D Sbjct: 898 AGD 900 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 246/1044 (23%), Positives = 392/1044 (37%), Gaps = 106/1044 (10%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D + +N Y+RNTL D + + ALL+IY +RPG+ T A S+ FFD +YDL Sbjct: 211 IDLIGDNDYLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVDNARSLLVSRFFDPKRYDL 270 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 ++VGR K+N +L+L + + + LVD G+ D L R + + Sbjct: 271 ASVGRYKINKKLHLK--------NRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQII 322 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 L+N +G + + SV + S+ + + ++ + + + + Sbjct: 323 PNLEN--GVGFRTLRPTDGVMEDSVLVQSIKIYAPNDEEKEINIIGNAYIEENVKHITPS 380 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 S L +G +R V + + + S+ Sbjct: 381 DIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQD 440 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 + I R V + + + L Sbjct: 441 MTTITPQQLI--NIRPVVASIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGG 494 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 E + + + I + + S + + E Sbjct: 495 LTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPE 554 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 V ++ + A +VA+ + + E + S + Sbjct: 555 TNRVTDKIDYLTADEEDNYVVAQANSKL-----DEQGTFTEEEVMARFRSENLAVEKERI 609 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 + + + +D ++ A+ A G + Sbjct: 610 DYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEHVSAK 669 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKL-------GPEEITRDIPNVSEEGLKNIDECG 880 + ++ H+E E+ R L G + V ++ Sbjct: 670 DSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCYNQRP 729 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 + G V G+IL + + +L A + D + V Sbjct: 730 NVAEGDRVVKGEILGNGPS-MDSGELALGRNVLVAFMTWDGYNYEDAIIM----SERLVK 784 Query: 941 DVRIFNRHGIDKNERSISVE---REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 D + H + + + E + +D LD R+ + + + Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844 Query: 998 GPKGFKKSTVLSSD--LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K T L+++ L+ + + +V + Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIV-------------LDV 891 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMPF+ DG Sbjct: 892 KIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDG 951 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 952 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMA 1011 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 T ++DG Sbjct: 1012 RDAK----------------------------TILYDG---------------------- 1021 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 +GE FD ++VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1022 ----RSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1077 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LTIKSDDVVGR + YE+IV G E G PESF VL+KE+Q Sbjct: 1078 EMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQ 1137 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPD 1379 +LG+ + + ++ + + D Sbjct: 1138 SLGMDVKMLSADEEEIEMRDMDDD 1161 >gi|47091392|ref|ZP_00229189.1| DNA-directed RNA polymerase, beta subunit [Listeria monocytogenes str. 4b H7858] gi|47020069|gb|EAL10805.1| DNA-directed RNA polymerase, beta subunit [Listeria monocytogenes str. 4b H7858] gi|328467869|gb|EGF38909.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes 1816] Length = 1184 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 446/963 (46%), Positives = 603/963 (62%), Gaps = 80/963 (8%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 + V G R R+ F + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 5 SGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFL----------DEGLREMFRD 54 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 + PI F+G LEF+ Y+ PK+ V++ RD YA PL++ LRLI K Sbjct: 55 ISPIEDFAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLI---------NKE 105 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 ++K+Q ++MGD PLMT+ GTF+I G +R++VSQL RSPG++F+ G+ +GK + Sbjct: 106 TGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFN---GKLDKNGKKGFG 162 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQ 240 +IP++G W++ E D+KD++HVRIDR RK+PVT L ALG S+ EI+ Sbjct: 163 STVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRN 222 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK-------- 291 + + L+ + GE +++ + L K Sbjct: 223 TLEKDNTDNAEKALL------EIYERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRY 276 Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS 351 + + L +AE +V+ ETGEI GD++D ++L++I + + Sbjct: 277 KINKKLHLKNRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQI------------IPN 324 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 + N R TD + L+ ++ P D Sbjct: 325 LENGVGFRTLRPTDGVME-DSVLVQSIKIYAPND-------------------------- 357 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 ++N+ N ++V+HI DII+ I +L +G G DDID+LGNRR+RSVGE+L Sbjct: 358 DEKEINIIGNAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELL 417 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQ+R+GL RMER ++ER+S D+ ++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 418 QNQFRIGLSRMERVVRERMSIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP 477 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+ Sbjct: 478 LGELTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAK 537 Query: 592 VNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 VN +GFIETPYR+V +VT+ + YL+A EE+N +AQANS LDE G+FTEE V R Sbjct: 538 VNKFGFIETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARF 597 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 E + V +E+ID++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPL+ EAP Sbjct: 598 RSENLAVEKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAP 657 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVDIYRLMKFQ 768 FVGTGME V AK SGAA+ AK GIVE V+A I +R V D T G+D Y L KF Sbjct: 658 FVGTGMEHVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFV 717 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQ TC NQRP V GD V + +I+ +GPS D G+LALGRN+LVAFM W GYN+ED+++ Sbjct: 718 RSNQGTCYNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAII 777 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEEFE ARDTKLGPEE+TRDIPNV E+ L+++DE GII VGAEV Sbjct: 778 MSERLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEV 837 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 D+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV+IF R Sbjct: 838 KDNDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTRE 897 Query: 949 GID 951 D Sbjct: 898 AGD 900 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 246/1044 (23%), Positives = 392/1044 (37%), Gaps = 106/1044 (10%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D + +N Y+RNTL D + + ALL+IY +RPG+ T A S+ FFD +YDL Sbjct: 211 IDLIGDNDYLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVDNARSLLVSRFFDPKRYDL 270 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 ++VGR K+N +L+L + + + LVD G+ D L R + + Sbjct: 271 ASVGRYKINKKLHLK--------NRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQII 322 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 L+N +G + + SV + S+ + + ++ + + + + Sbjct: 323 PNLEN--GVGFRTLRPTDGVMEDSVLVQSIKIYAPNDDEKEINIIGNAYIEENVKHITPS 380 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 S L +G +R V + + + S+ Sbjct: 381 DIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQD 440 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 + I R V + + + L Sbjct: 441 MTTITPQQLI--NIRPVVASIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGG 494 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 E + + + I + + S + + E Sbjct: 495 LTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPE 554 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 V ++ + A +VA+ + + E + S + Sbjct: 555 TNRVTDKIDYLTADEEDNYVVAQANSKL-----DEQGTFTEEEVMARFRSENLAVEKERI 609 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 + + + +D ++ A+ A G + Sbjct: 610 DYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEHVSAK 669 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKL-------GPEEITRDIPNVSEEGLKNIDECG 880 + ++ H+E E+ R L G + V ++ Sbjct: 670 DSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCYNQRP 729 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 + G V G+IL + + +L A + D + V Sbjct: 730 NVAEGDRVVKGEILGNGPS-MDSGELALGRNVLVAFMTWDGYNYEDAIIM----SERLVK 784 Query: 941 DVRIFNRHGIDKNERSISVE---REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 D + H + + + E + +D LD R+ + + + Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844 Query: 998 GPKGFKKSTVLSSD--LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K T L+++ L+ + + +V + Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIV-------------LDV 891 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMPF+ DG Sbjct: 892 KIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDG 951 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 952 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMA 1011 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 T ++DG Sbjct: 1012 RDAK----------------------------TILYDG---------------------- 1021 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 +GE FD ++VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1022 ----RSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1077 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LTIKSDDVVGR + YE+IV G E G PESF VL+KE+Q Sbjct: 1078 EMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQ 1137 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPD 1379 +LG+ + + ++ + + D Sbjct: 1138 SLGMDVKMLSADEEEIEMRDMDDD 1161 >gi|56961924|ref|YP_173646.1| DNA-directed RNA polymerase subunit beta [Bacillus clausii KSM-K16] gi|81367464|sp|Q5WLS0|RPOB_BACSK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|56908158|dbj|BAD62685.1| DNA-directed RNA polymerase beta subunit [Bacillus clausii KSM-K16] Length = 1180 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 439/958 (45%), Positives = 613/958 (63%), Gaps = 65/958 (6%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M ++ G R R+ + + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 1 MTGQLIQYGRHRQRRSYARINEVLELPNLIEIQTASYQWFL----------DEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G +LEF+ Y PK+ VD+ RD+T+A PL++ +RLI K Sbjct: 51 DISPIQDFTGNLVLEFIDYSLGEPKYPVDESKERDVTFAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP +++ + +GK + Sbjct: 102 ETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYYSQKLDK---NGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKI--V 237 +IP++G W+++E D+KDI++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 TATVIPNRGAWLELETDAKDIVYVRIDRTRKIPVTVLLRALGFGSDQEIVDLLGENEYLR 218 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGL-LKSLKEKGVKFL 296 + D A + ++ + ++ES L ++ + Sbjct: 219 NTLEKDNTDSTDKALLEIYERLRPGEPPTVENAKSLLESRFFDPKRYDLANVGRYKINKK 278 Query: 297 GITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 + L +AE +V+ ETGE+ E G ++D ++L+++ IP L + A Sbjct: 279 LHIKNRLFNQRLAEKLVDPETGEVLAEEGTLLDRRTLDKL-------IPHLEKNVGFRTA 331 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 R + + D + + IY +D Y+ V V Sbjct: 332 --RTSGGVLEESDVEIQSVKIYV-----------------------ADDYEGERVISVIS 366 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N + D +HI DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R Sbjct: 367 NGMVERDV----KHIAPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFR 422 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GL RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLSQ + N L+ +T Sbjct: 423 IGLSRMERVVRERMSIQDPNVITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 482 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL+++L+S+A+VN +G Sbjct: 483 HKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINTLSSYAKVNEFG 542 Query: 597 FIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 F+ETPYR+V GKVT+ + YL+A EE+N +AQAN+ L++DGSF ++ + R GE Sbjct: 543 FMETPYRRVDPETGKVTSRIDYLTADEEDNYVVAQANAKLNDDGSFVDDNIIARFRGENT 602 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 +VP +++D++D SPKQVVS A S IPFLENDDSNR LMG NMQRQAVPLL EAP VGTG Sbjct: 603 VVPCDRVDYMDVSPKQVVSAATSCIPFLENDDSNRALMGANMQRQAVPLLVPEAPLVGTG 662 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG-DLDPSTSGVDIYRLMKFQRSNQN 773 ME V AK SGAA+V+K AGIVE+V A I +R +E D + +D Y+L KF RSNQ Sbjct: 663 MEHVSAKDSGAAVVSKYAGIVERVTAKEIWVRRIEEVDGKETKGDLDKYKLQKFVRSNQG 722 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 T NQRP+V+ GD + + +I+ADGPS ++G++ALGRN+LVAFM W GYN+ED++++SER+ Sbjct: 723 TSYNQRPIVREGDRIEKREILADGPSMEMGEMALGRNVLVAFMTWDGYNYEDAIILSERL 782 Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDI 893 V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII +GAEV GDI Sbjct: 783 VKDDVYTSIHIEEYESDARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDI 842 Query: 894 LVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLR P G G V+DV+IFNR D Sbjct: 843 LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIVLDVKIFNREDGD 900 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 255/1050 (24%), Positives = 404/1050 (38%), Gaps = 107/1050 (10%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 VD + N Y+RNTL D ALL+IY +RPG+ T A+S+ FFD +YDL Sbjct: 208 VDLLGENEYLRNTLEKDNTDSTDKALLEIYERLRPGEPPTVENAKSLLESRFFDPKRYDL 267 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 + VGR K+N +L++ + + L + + + R++ Sbjct: 268 ANVGRYKINKKLHIKNRLFNQRL-----------AEKLVDPETGEVLAEEGTLLDRRTLD 316 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 +++ + + R R+ + D++ + + V + + + +H Sbjct: 317 KLIPHLEKNVGFRTARTSGGVLEESDVEIQSVKIYVADDYEGERVISVISNGMVERDVKH 376 Query: 529 VNSLSRITHTRRL-SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 + I + L G + R + G + + G + Sbjct: 377 IAPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRS--VGELLQNQFRIGLSRMERVVRE 434 Query: 588 SFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 + + I + + + + + + L Sbjct: 435 RMS-IQDPNVITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPG 493 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKA 706 E + + + + I + S + + Sbjct: 494 GLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINTLSSYAKVNEFGFMETPYRRVDP 553 Query: 707 EAPFVGTGMESVVAKSSGAAI----VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 E V + ++ + A + AK VD I E + P + Sbjct: 554 ETGKVTSRIDYLTADEEDNYVVAQANAKLNDDGSFVDDNIIARFRGENTVVPCDRVDYMD 613 Query: 763 RLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYN 822 K S +C+ + +D ++ +LV P G Sbjct: 614 VSPKQVVSAATSCIP---------FLENDD--SNRALMGANMQRQAVPLLVPEAPLVGTG 662 Query: 823 FE-------DSMLISERMVSEDVFTSIHIEEFEVMARDTKL--GPEEITRDIPNVSEEGL 873 E + ++S+ + T+ I + D K G + + V Sbjct: 663 MEHVSAKDSGAAVVSKYAGIVERVTAKEIWVRRIEEVDGKETKGDLDKYKLQKFVRSNQG 722 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 + ++ I+ G + +IL + M +L A + D + Sbjct: 723 TSYNQRPIVREGDRIEKREILADGPS-MEMGEMALGRNVLVAFMTWDGYNYEDAII---- 777 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQ 993 +S +V ++ I++ E + E + RD + RN+ R I G Sbjct: 778 -LSERLVKDDVYTSIHIEEYESDARDTKLGPEEITRDIPNVGEDALRNLDER-GIIRIGA 835 Query: 994 NAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 G K T ++ R F + +V+ + Sbjct: 836 EVKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIV------L 889 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 KI + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMPFL Sbjct: 890 DVKIFNREDGDELPPGVNQLVRVYIVQKRKINQGDKMAGRHGNKGVISRILPEEDMPFLP 949 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 950 DGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARKLGIHVASPVFDGASEEDVWGTLEEAG 1009 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 T ++DG Sbjct: 1010 MARDGK----------------------------TILYDG-------------------- 1021 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 TGEPFD V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1022 ------RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQR 1075 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE Sbjct: 1076 FGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKE 1135 Query: 1354 MQALGLSIDLENSRTKNSAKMEEIPDFNKC 1383 +Q+LG+ + + +S + E + ++ Sbjct: 1136 LQSLGMDVKMLSSNEEEIEMRELDDEEDQT 1165 >gi|116495960|ref|YP_807694.1| DNA-directed RNA polymerase subunit beta [Lactobacillus casei ATCC 334] gi|239630363|ref|ZP_04673394.1| DNA-directed RNA polymerase subunit beta [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067514|ref|YP_003789537.1| DNA-directed RNA polymerase subunit beta [Lactobacillus casei str. Zhang] gi|122262640|sp|Q034X0|RPOB_LACC3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|116106110|gb|ABJ71252.1| DNA-directed RNA polymerase subunit beta [Lactobacillus casei ATCC 334] gi|239527975|gb|EEQ66976.1| DNA-directed RNA polymerase subunit beta [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439921|gb|ADK19687.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Lactobacillus casei str. Zhang] Length = 1199 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 583/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F Sbjct: 1 MAGHLVNYGKHRTRRSYARIKEVLDLPNLIEIQTNSYQWFL----------DEGLKEMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V++ D Y+ PL +TLRL Sbjct: 51 DIMPIDDFQGKLSLEFVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F + + + ++ Y Sbjct: 102 ETGEIKSQDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFHSETDK---NSRVTY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KDI +VRIDR RK+P+T + ALG S+ +I++ F Sbjct: 159 GTTVIPNRGAWLEYETDAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLM 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE +S + L K + +G Sbjct: 219 LTLEKD-VHKNTDDSRTDEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE + + +TGE+ + G +D + ++++ Sbjct: 278 YKVNKKLSLKTRLLNQVLAETLADPDTGEVIAQKGTKVDRQVMDKLAPYL---------- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 DR D Y+ G V+ +S+ + DK Sbjct: 328 ------------------DRDDFKTITYQPSDQGVVTDPIELQSIKVYSQVTPDKE---- 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N V+HI D++A + ++L+ G G+IDDID+LGNRR+RSVGE+ Sbjct: 366 -----INLIGNGHIGKKVKHIVPADVLASMNYFLNLQEGLGSIDDIDHLGNRRIRSVGEL 420 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 421 LQNQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 480 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A Sbjct: 481 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA 540 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 VN YGFIETPYR+V KVT+ + YL+A EE+N +AQANS L++DGSF +E V R Sbjct: 541 VVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDETVLAR 600 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 I + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 601 HKDNNIEISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVNPHA 660 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME A SG A++A AG VE VDA +I +R +G LD Y LMKF+ Sbjct: 661 PLVGTGMEYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALDA-------YNLMKFK 713 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V +GD V ++IIADGP+ G+LALG+N ++AFM W+ YN+ED+++ Sbjct: 714 RSNAGKNYNQRPIVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIV 773 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEE+E ARDTKLGPEE+TR+IPNV EE LK++DE G++ VGAEV Sbjct: 774 LSERLVKDDVYTSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEV 833 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R Sbjct: 834 RDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRE 893 Query: 949 GID 951 D Sbjct: 894 AGD 896 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 236/1072 (22%), Positives = 385/1072 (35%), Gaps = 102/1072 (9%) Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D + I + E F S+ I + + ++ + Sbjct: 175 DAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRT 234 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 +AL DIY +RPG+ T + S+ FFD +YDL++VGR K+N +L+L T + Sbjct: 235 DEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQV 294 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + L + + + ++ R + ++ Sbjct: 295 L-----------AETLADPDTGEVIAQKGTKVDRQVMDKLAPYLDRDDFKTITYQPSDQG 343 Query: 491 SSVDI---DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 D S+ + ++ + ++ + S LG Sbjct: 344 VVTDPIELQSIKVYSQVTPDKEINLIGNGHIGKKVKHIVPADVLASMNYFLNLQEGLGSI 403 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 +R V + + + S+ A V I R V Sbjct: 404 DDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMSIQDTATVTPQQLI--NIRPVVA 461 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + + + L + + + Sbjct: 462 SIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYG 517 Query: 668 PKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 + I + + S V+ + + V ++ + A Sbjct: 518 RMCPIETPEGPNIGLINSLASYAVVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNY 577 Query: 727 IVAKRA----GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 IVA+ VD + + K + C+ Sbjct: 578 IVAQANSPLNDDGSFVDETVLARHKDNNIEISPDKVDYMDVSPKQVVAVATACIP----- 632 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + +D ++ A+ A + G ++ + +++ + T Sbjct: 633 ----FLENDDSNRALMGANMQRQAVPLVNPHAPLVGTGMEYKAAHDSGTAVLANNAGTVE 688 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +++ ++ R + G + + KN ++ I+ +G V D ++ Sbjct: 689 YVDAKQIRVRR-EDGALDAYNLMKFKRSNAGKNYNQRPIVTIGDHV-DVDEIIADGPAMQ 746 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + + + A + D + V D + H + + + Sbjct: 747 NGELALGQNPIIAFMTWNMYNYEDAIVL----SERLVKDDVYTSIHIEEYESEARDTKLG 802 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E+ + + L + G G K T +S R Sbjct: 803 PEEVTREIPNVGEEALKD--LDEFGVVRVGAEVRDGDILVGKVTPKGVTELSAEERLLHA 860 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 F + +V+ + + KI + GD++ PGV +V+V++ KR Sbjct: 861 IFGEKAREVRDTSLRVPHGGGGIIQDV------KIFTREAGDELSPGVNMMVRVYITQKR 914 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG VS ++P EDMP+L DGTPVDI L+P+GVPSRMN+GQ+ E HLG Sbjct: 915 KIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVPSRMNIGQVLELHLG 974 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG + + + D + D+ Sbjct: 975 MAARNLGIHVATPVFDGANDKDLW------------------------------------ 998 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 A + A + G+S+LYDG TGEPF+ V+VG +Y +KL+HM Sbjct: 999 -----------ATVKE-------AGMASDGKSVLYDGRTGEPFENRVSVGIMYYMKLSHM 1040 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDV Sbjct: 1041 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDV 1100 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 VGR + YE+IV G + G PESF VLVKE+QALGL + + + K Sbjct: 1101 VGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGLDMKVLGADKKEIELR 1152 >gi|295694829|ref|YP_003588067.1| DNA-directed RNA polymerase, beta subunit [Bacillus tusciae DSM 2912] gi|295410431|gb|ADG04923.1| DNA-directed RNA polymerase, beta subunit [Bacillus tusciae DSM 2912] Length = 1175 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 443/964 (45%), Positives = 607/964 (62%), Gaps = 80/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R F + E++ +P+LIE+Q+ SY FL EGL+ F+ Sbjct: 1 MRGQLVDYGR-RKRWSFARIHEVLPLPNLIEIQQNSYRWFL----------EEGLREMFQ 49 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PIT F+G +LEFV Y PK+ V++ RD+TYA PL++ +RLI + Sbjct: 50 DISPITDFTGNLVLEFVDYTLGEPKYSVEESKERDVTYAAPLRVKVRLI---------NR 100 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F+ +A +GK Y Sbjct: 101 ETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFN---AKADKNGKRTY 157 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KD+I+ RIDR RK+PVT L ALG ++ +I+ Sbjct: 158 GATVIPNRGAWLELETDTKDVIYARIDRTRKIPVTVLLRALGFSTDADIVHLLGEDEYLR 217 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + L+ + GE +E+ + L K Sbjct: 218 NTLEKDNTDSVEKALL------EIYDRLRPGEPPTLENARALLKSRFFDPKRYDLANVGR 271 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AED+V+ TGE+ E+G V+D + L+++ + Sbjct: 272 YKINKKLHLKNRLLNQRLAEDLVDPRTGEVVAESGRVLDRRLLDKVVPA----------- 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + ++ + + L R+ P Sbjct: 321 -LEAGMNMKEYRKSSGVVEDDVIRLQEVRIFSP--------------------------L 353 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 V + + N V++I DIIA + ++L +G G IDDID+LGNRR+RSVGE+ Sbjct: 354 VEGQVIKVIGNGMVDKSVKYIVPADIIASVNYFLNLLHGVGDIDDIDHLGNRRLRSVGEL 413 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++A+ EFF SSQLSQ + N Sbjct: 414 LQNQFRIGLSRMERVVRERMSIQDANAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTN 473 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 474 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSSYA 533 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIETPYR+V G VT+++ YL+A EE+N IAQAN+ LDEDG FT+E V R Sbjct: 534 RINEYGFIETPYRRVDPETGVVTDEIHYLTADEEDNYVIAQANAELDEDGRFTQEQVIAR 593 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + PR +ID++D SPKQVVS+A +LIPFLENDD+NR LMG NMQRQAVPLL E+ Sbjct: 594 YKEEIGMFPRSRIDYMDVSPKQVVSVATALIPFLENDDANRALMGSNMQRQAVPLLVTES 653 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG-VDIYRLMKF 767 PFVGTGME AK SG VAKR G+VE+V A I IR E SG +D Y+L+KF Sbjct: 654 PFVGTGMEYKAAKDSGVCTVAKRGGVVERVTADEIWIRVQEEVDGKVVSGDLDKYKLLKF 713 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSNQ TC+NQRP+V+ G++V+ DIIADGP+TD G+LALGRN+LVAFM W GYN+ED++ Sbjct: 714 RRSNQGTCINQRPIVRKGEKVQAGDIIADGPATDQGELALGRNVLVAFMTWEGYNYEDAI 773 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 L+SE++V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+++D+ GII +GAE Sbjct: 774 LLSEKLVKEDVYTSIHIEEYEAEARDTKLGPEEITRDIPNVGEDALRHLDDRGIIRIGAE 833 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 + GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G +G VVDV++F R Sbjct: 834 IYAGDILVGKVTPKGMTELTAEERLLHAIFGEKAREVRDTSLRVPHGGAGIVVDVKVFTR 893 Query: 948 HGID 951 D Sbjct: 894 ENGD 897 Score = 562 bits (1449), Expect = e-157, Method: Composition-based stats. Identities = 277/1152 (24%), Positives = 432/1152 (37%), Gaps = 147/1152 (12%) Query: 268 DTGEQVIESGKK-LTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI-----VNGETGEIY 321 +TG +I ++ + S L++S G V + + +T ++ Sbjct: 120 ETGTFIINGAERVIVSQLVRSPSVYFNAKADKNGKRTYGATVIPNRGAWLELETDTKDVI 179 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 D + + + + V + + Y+RNTL D + ALL+IY + Sbjct: 180 YARIDRTRKIPVTVLLRALGFSTDADIVHLLGEDEYLRNTLEKDNTDSVEKALLEIYDRL 239 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI--------RK 433 RPG+ T A ++ FFD +YDL+ VGR K+N +L+L + + Sbjct: 240 RPGEPPTLENARALLKSRFFDPKRYDLANVGRYKINKKLHLKNRLLNQRLAEDLVDPRTG 299 Query: 434 EDIIAIIKIL-VDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 E + ++L L + + +S G + + RL +R+ + E Sbjct: 300 EVVAESGRVLDRRLLDKVVPALEAGMNMKEYRKSSGVVEDDVIRLQEVRIFSPLVEGQVI 359 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS------ALGQ 546 I + M + + L ++ + + + R S + Sbjct: 360 KVIGNGMVDKSVKYIVPADIIASVNYFLNLLHGVGDIDDIDHLGNRRLRSVGELLQNQFR 419 Query: 547 GGVARARAGVEMR-------DVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 G++R V R + P I P + G + N + Sbjct: 420 IGLSRMERVVRERMSIQDANAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELT 479 Query: 600 TPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 R LSA R + Sbjct: 480 HKRR-------------LSA---------------------LGPGGLTRERAGFEVRDVH 505 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 + P + I + + S + + E V + + Sbjct: 506 HSHYGRMCPIET--PEGPNIGLINSLSSYARINEYGFIETPYRRVDPETGVVTDEIHYLT 563 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A ++A+ + D + G+ + + + Q Sbjct: 564 ADEEDNYVIAQANAEL---DEDGRFTQEQVIARYKEEIGMFPRSRIDYM----DVSPKQV 616 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE-------DSMLISER 832 V + A+ +LV P+ G E +++R Sbjct: 617 VSVATALIPFLENDDANRALMGSNMQRQAVPLLVTESPFVGTGMEYKAAKDSGVCTVAKR 676 Query: 833 --MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 +V I I E + G + + + I++ I+ G +V Sbjct: 677 GGVVERVTADEIWIRVQEEVDGKVVSGDLDKYKLLKFRRSNQGTCINQRPIVRKGEKVQA 736 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 GDI+ + + +L A + + D L V V I Sbjct: 737 GDIIADGP-ATDQGELALGRNVLVAFMTWEGYNYEDAILLSEKLVKEDV-YTSIHIEEYE 794 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSS 1010 + + E + +D LD R+ G +G K T Sbjct: 795 AEARDTKLGPEEITRDIPNVGEDALRHLDDRGIIRI-----GAEIYAGDILVGKVTPKGM 849 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 ++ R F + +V+ + + K+ + GD++PPGV Sbjct: 850 TELTAEERLLHAIFGEKAREVRDTSLRVPHGGAGIVVDV------KVFTRENGDELPPGV 903 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 ++V+V++A KR I GDKMAGRHGNKG+++RILP EDMPFL DGTPV+IVLNPLGVPSR Sbjct: 904 NQLVRVYIAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFLPDGTPVEIVLNPLGVPSR 963 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MN+GQ+ ETHLG +G ++ + + D DI Sbjct: 964 MNIGQVLETHLGMVAKAMGLRMATPVFDGATEHDI------------------------- 998 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 FD L A LD G+++LYDG TGEPFD VT Sbjct: 999 --------------------FD---------ALEEAGLDRDGKTVLYDGRTGEPFDDRVT 1029 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VGY+YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY Sbjct: 1030 VGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1089 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE+Q+L + + + + + Sbjct: 1090 LQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLAMDVKILSEDEQE 1149 Query: 1371 SAKMEEIPDFNK 1382 E D Sbjct: 1150 IIMRESDDDEED 1161 >gi|228475243|ref|ZP_04059968.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus hominis SK119] gi|314937153|ref|ZP_07844500.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus hominis subsp. hominis C80] gi|228270708|gb|EEK12117.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus hominis SK119] gi|313655772|gb|EFS19517.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus hominis subsp. hominis C80] Length = 1183 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 447/964 (46%), Positives = 603/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SYD FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFL----------KEGLLEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KDI++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDIVYVRIDRTRKLPLTVLLRALGFSSDQEIIDLLGDSEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDSTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IV+ ETGEI E G V+D + L+EI + + Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVDSETGEIVAEEGTVLDRRKLDEIMN--------VLES 324 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N+ + V D+ + + + + D ++ + Sbjct: 325 NANSEVFELEGSVIDEPVEIQSIKVYV----------------------PNDEEERTTTV 362 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G +V+ I DIIA + +L NG G DDID+LGNRR+RSVGE+ Sbjct: 363 IGNAL--------PDSEVKCITPADIIASMSYFFNLLNGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D DS+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDIDTNSITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGTEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVSVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GII VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSENALKNLDDRGIIYVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 162/440 (36%), Positives = 223/440 (50%), Gaps = 60/440 (13%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGP---KGFKKSTVL 1008 K++ S+ E+ E ARD + R+I + L + K +L Sbjct: 782 KDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSENALKNLDDRGIIYVGAEVKDGDIL 841 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR-FKNKIEKIQWGDD-M 1066 + + + + ++ K+ + GDD + Sbjct: 842 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTL 901 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLG Sbjct: 902 SPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLG 961 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 962 VPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------------------ 1003 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + A + G +++LYDG TGEPFD Sbjct: 1004 -------IEEAGMARDG-----------------------------KTVLYDGRTGEPFD 1027 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1028 NRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1087 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQE+LT KSDD VGR + YESIV G + PESF VL+KE+Q+LGL + + + Sbjct: 1088 AAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDE 1147 Query: 1367 RTKNSAKMEEIPDFNKCELK 1386 M ++ D + E K Sbjct: 1148 HDNEIE-MADVDDEDATERK 1166 >gi|169830046|ref|YP_001700204.1| DNA-directed RNA polymerase subunit beta [Lysinibacillus sphaericus C3-41] gi|226699418|sp|B1HMZ6|RPOB_LYSSC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|168994534|gb|ACA42074.1| DNA-directed RNA polymerase beta chain [Lysinibacillus sphaericus C3-41] Length = 1191 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 433/964 (44%), Positives = 603/964 (62%), Gaps = 76/964 (7%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ F + E++++P+LIE+Q ASY+ FL EGL+ F+ Sbjct: 4 LTGQLVQYGQHRQRRSFARIKEVLELPNLIEIQTASYEWFL----------EEGLREMFR 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+DVD+C RD+TYA PL++ +RL K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGDPKYDVDECKERDVTYAAPLRVKVRLY---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F + +GK + Sbjct: 105 ETDEVKEQDVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFH---DKTDKNGKKGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 162 GATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDIIGDNEYLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK---- 294 + + L+ + GE +ES K L K + Sbjct: 222 NTLEKDNSESTEKALL------EIYERLRPGEPPTVESAKSLLYSRFFDAKRYDLANVGR 275 Query: 295 ----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +V+ ETGEI +E G V+D ++L++I + Sbjct: 276 YKMNKKLHIKNRLFNQTIAETLVDPETGEILVEKGTVLDRRTLDKILPYLEDSSKGIGFR 335 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +++ + D + ++ P D + Sbjct: 336 TLSQVGGVLE----------DDVTIQSIKIYAPKDEAQK--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N ++V++I D+++ + +L G DDID+LGNRR+RSVGE+ Sbjct: 365 ----EINIISNAYIDEEVKNITPADVLSSVSYFFNLLYQVGATDDIDHLGNRRLRSVGEL 420 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 421 LQNQFRIGLSRMERVVRERMSINDTAAIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 480 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 481 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 540 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR++ +VT+ + YL+A EE+N Y+AQANS L+ DGSF + V R Sbjct: 541 KVNKFGFIETPYRRIDHETGQVTDQIDYLTADEEDNYYVAQANSPLNPDGSFANDEVVGR 600 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G+ + + ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL EA Sbjct: 601 FRGDNTVFNKAQMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLNPEA 660 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDI-YRLMKF 767 PFVGTGME V A+ SGAA+VAK GIVE V+A I +R +E G Y+L KF Sbjct: 661 PFVGTGMEHVDARDSGAAVVAKYDGIVEHVEARSIHVRRIEVVDGKEVKGDLTKYKLQKF 720 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ T NQRPLVKVG+ V+ DI+ADGPS + G+LALGRN+LVAFM W+G+N+ED++ Sbjct: 721 IRSNQGTSYNQRPLVKVGERVKPRDILADGPSMEKGELALGRNVLVAFMTWNGFNYEDAV 780 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TS+HIEE+E +RDTKLGPEEITRDIPNV E+ L+N+DE GII +GAE Sbjct: 781 IMSERLVKDDVYTSVHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAE 840 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 841 VRDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIILDVKVFNR 900 Query: 948 HGID 951 D Sbjct: 901 EDGD 904 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 183/554 (33%), Positives = 260/554 (46%), Gaps = 77/554 (13%) Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V SIH+ EV+ G + + + ++ ++ VG V P D Sbjct: 686 IVEHVEARSIHVRRIEVVDGKEVKGDLTKYKLQKFIRSNQGTSYNQRPLVKVGERVKPRD 745 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDK 952 IL + + + +L A + D + V V + + Sbjct: 746 ILADGPS-MEKGELALGRNVLVAFMTWNGFNYEDAVIMSERLVKDDVYTSVHIEEYESES 804 Query: 953 NERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV 1007 + + E I + D DE+ I+ R +IL G+ G Sbjct: 805 RDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVRDGDILVGKVTPKGVTELTAEER 864 Query: 1008 LSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMP 1067 L + E R +++ + K+ + GD++P Sbjct: 865 LLHAIFGEKARE-VRDTSLRVPHGAGGI----------------ILDVKVFNREDGDELP 907 Query: 1068 PGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV 1127 PGV ++V+ ++ KR I+ GDKMAGRHGNKG++SRILP EDMPF+ DGTPVDI+LNPLGV Sbjct: 908 PGVNQLVRAYIVQKRKIRVGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGV 967 Query: 1128 PSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISD 1187 PSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 968 PSRMNIGQVLELHLGMASRYLGVHMATPVFDGANEEDVW--------------------- 1006 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 + A + G ++ILYDG +GEPFD Sbjct: 1007 ----ETMEEAGMNRDG-----------------------------KTILYDGRSGEPFDN 1033 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1034 RVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1093 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 AY LQE+LT+KSDDVVGR + YE+IV G E G PESF VL+KE+Q+LG+ + + Sbjct: 1094 AYTLQEILTVKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLGMDVKMLTVN 1153 Query: 1368 TKNSAKMEEIPDFN 1381 + + + + Sbjct: 1154 DEEVELRDLDEEED 1167 >gi|313903159|ref|ZP_07836553.1| DNA-directed RNA polymerase subunit beta [Thermaerobacter subterraneus DSM 13965] gi|313466661|gb|EFR62181.1| DNA-directed RNA polymerase subunit beta [Thermaerobacter subterraneus DSM 13965] Length = 1237 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 454/951 (47%), Positives = 586/951 (61%), Gaps = 94/951 (9%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 VV +G R R FG+ E++D+P+LIEVQ SY FL NEGL+ F+ + Sbjct: 3 HVVKSG-KRERLSFGRIHEVLDLPNLIEVQLNSYRWFL----------NEGLKETFQDIS 51 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI F+G +LEFV Y PK+ V +C RD+TYA P+++ +RLI K Sbjct: 52 PIQDFTGNLVLEFVDYSLGEPKYSVQECKDRDVTYAAPMRVRVRLI---------NKETG 102 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 ++KEQ ++MGD PLMT+ GTFVI G +R+VVSQL RSPG+++ D +G LY+ Sbjct: 103 EVKEQEVFMGDFPLMTEHGTFVINGAERVVVSQLVRSPGVYYSVDYD---ANGNPLYSAT 159 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRG 242 +IP++G W++ E D+ +++VR+DR RK P T L ALG ++ E+L Sbjct: 160 VIPNRGAWLEFETDASGVVYVRVDRTRKQPATVLLRALGYQTDAELLELLGDTEHVRATL 219 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD 301 D A L+ K + GE ES ++L L K + Sbjct: 220 DKDNTDSQAEALIEIYK------RLRPGEPPTDESARQLLDNLFFDPKRYDLAA------ 267 Query: 302 CLCGLYVAEDIVNGETGEI-YIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 G Y +N I A DV+D ++ E I + R L Sbjct: 268 --VGRYKMNKKLNLRARLIGLYAAEDVVDPQTGERIVEAGQRFDRQLAQRVQAAGV---- 321 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 + + +D + V+ G Sbjct: 322 --RRVRVRTPEDREV---VVLGNGQP---------------------------------- 342 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 VR + +EDI AII L G GT DDID+LGNRR+RSVGE+L+NQ+R+GL Sbjct: 343 ----DTTVRTLTREDIAAIINYAFGLFAGVGTTDDIDHLGNRRLRSVGELLQNQFRIGLA 398 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER IKER+S D D++ PQ LIN +PVV+AV EFF SSQLSQ + N LS +TH RR Sbjct: 399 RMERVIKERMSIQDADAITPQALINIRPVVAAVKEFFGSSQLSQFMDQTNPLSELTHKRR 458 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG++R RAG ++RDVH +HYGR+CP ET EG NIGL+ ++ ++ARVN YGFIET Sbjct: 459 LSALGPGGLSRERAGFDVRDVHHSHYGRMCPIETPEGPNIGLIGAMATYARVNEYGFIET 518 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 PYR+V G+VT+DVVYL+A EE+ IAQAN+ LDE+G F E+ V R E L E+ Sbjct: 519 PYRRVEKGRVTDDVVYLTADEEDECVIAQANAELDENGYFKEKRVAVRFRDEVRLAAPEE 578 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ID++D SPKQV SIA +LIPFLE+DD+NR LMG NMQRQAVPL++ EAP VGTG+E A Sbjct: 579 IDYMDVSPKQVFSIATALIPFLEHDDANRALMGANMQRQAVPLIRTEAPLVGTGVEYRTA 638 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG I A+RAG V +V A IV+ + +G D Y LMKF+RSNQ TC NQRP Sbjct: 639 VDSGVVITARRAGTVRRVTAREIVVETEDGQRD-------TYHLMKFERSNQGTCFNQRP 691 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 LV+ G V + D++ADGPSTD G+LALGRN+LVAFMPW GYN+ED++LISER+V +DVFT Sbjct: 692 LVRKGQRVEKGDVLADGPSTDHGELALGRNVLVAFMPWEGYNYEDAILISERLVKDDVFT 751 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE+E ARDTKLGPEEITRDIPNV E+ L+++DE GII +GAEV GDILVGK+TP Sbjct: 752 SIHIEEYECEARDTKLGPEEITRDIPNVGEDQLRDLDERGIIRIGAEVRAGDILVGKVTP 811 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG VVDV++F+R D Sbjct: 812 KGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKVFSRENGD 862 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 200/532 (37%), Positives = 275/532 (51%), Gaps = 79/532 (14%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 +T+ G + + ++ ++ G V GD+L + + + Sbjct: 664 ETEDGQRDTYHLMKFERSNQGTCFNQRPLVRKGQRVEKGDVLADGPST-DHGELALGRNV 722 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDK- 971 L A + + D L +S +V +F I++ E + E + RD Sbjct: 723 LVAFMPWEGYNYEDAIL-----ISERLVKDDVFTSIHIEEYECEARDTKLGPEEITRDIP 777 Query: 972 ---DDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD--LISEYPRSQWWQFAV 1026 +D+ LD R+ + + + G K T L+++ L+ + + Sbjct: 778 NVGEDQLRDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRD 837 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 +V + V K+ + GD++ PGV ++V+V+VA KR I Sbjct: 838 TSLRVPHGESGIVV-------------DVKVFSRENGDELAPGVNQLVQVYVAQKRKISE 884 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG+++RI+P EDMPFL DGTPVDIVLNPLGVPSRMN+GQI E Sbjct: 885 GDKMAGRHGNKGVIARIMPEEDMPFLPDGTPVDIVLNPLGVPSRMNIGQILE-------C 937 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG K+L G+ V Sbjct: 938 HLGWAAKAL-----------------------------------------------GLWV 950 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDG EE+I +LR A L ESG+++LYDG TGEPFD VTVGY+YMLKL H+V DK Sbjct: 951 ATPVFDGTGEESIRELLRKAGLPESGKTVLYDGRTGEPFDNEVTVGYVYMLKLAHLVDDK 1010 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR Sbjct: 1011 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRV 1070 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 + YE+IV G + E G PESF VL+KEMQ+LGL + + + + E+ Sbjct: 1071 KTYEAIVKGENVPEPGVPESFKVLIKEMQSLGLDVKILSEDNREIVLREDEE 1122 >gi|260585055|ref|ZP_05852797.1| DNA-directed RNA polymerase, beta subunit [Granulicatella elegans ATCC 700633] gi|260157251|gb|EEW92325.1| DNA-directed RNA polymerase, beta subunit [Granulicatella elegans ATCC 700633] Length = 1213 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 432/989 (43%), Positives = 608/989 (61%), Gaps = 89/989 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G RVR+ + + E++++P+LIE+Q SY FL +EG++ FK Sbjct: 1 MAHHDVKYGKHRVRRSYARISEVLELPNLIEIQTDSYQWFL----------DEGIREMFK 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI +G LEF+ YE PK+++ + D YA P+ + +RL+ K Sbjct: 51 DISPIEDHTGNLSLEFLDYELHAPKYNLAEARNHDANYAAPIYVKMRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG +F R +GK LY Sbjct: 102 ETGEVKDQEVFFGDFPLMTEMGTFIINGAERVIVSQLVRSPGSYFH---DRPDKNGKALY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W++ E DSKDI +VRIDR RK+P+T + ALG +S++ IL F Sbjct: 159 GATLIPNRGAWLEYESDSKDISYVRIDRTRKIPLTVLVRALGFESDDTILEIFGESETLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVD-IDTGEQ-VIESGKKLTSGLLKSLKEK------ 291 D D + + D + GE ES + L + + Sbjct: 219 LTLDKDVHKRM--DESRTEEALKDIYDRLRPGEPKTAESSRNLLTARFFDPRRYDFAAVG 276 Query: 292 --GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYV 349 V L +AE+IV+ ETGEI +EAG V++++ +E++ + Sbjct: 277 RYKVNKKLNLKTRLLNQTIAENIVHPETGEIVVEAGTVLEKEIMEKVAQA---------- 326 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 + A + + + ++ + +V P D Sbjct: 327 --LEAGANLFTLYPSSEGVIQEPVTIQSVQVYSPQDP----------------------- 361 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 + + N + PD+++ + D++A I ++L G G+ DDID+LGNRR+RSVGE Sbjct: 362 ---EKVIKVIGNANIPDEIKCVTAADVLATISYFLNLYEGIGSTDDIDHLGNRRIRSVGE 418 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +L+NQ+R+GL RMER ++ER+S D+ +V PQ L+N +PVV+A+ EFF SSQLSQ + Sbjct: 419 LLQNQFRIGLSRMERVVRERMSIQDVATVTPQQLVNIRPVVAAIKEFFGSSQLSQFMDQT 478 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+ Sbjct: 479 NPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSY 538 Query: 590 ARVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 A++N YGF+ETPYR+V KVT+ + YL+A EE+ +AQANS L+EDGSF ++V Sbjct: 539 AKINKYGFVETPYRRVDWKTHKVTDKIDYLTADEEDRYVVAQANSPLNEDGSFVNDVVMA 598 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R E + VP E++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPLL + Sbjct: 599 RYVSENLEVPVERVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLNPK 658 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 APF+GTGME V A SG A++ KR GIVE VDA ++ +R+ +G LD Y + KF Sbjct: 659 APFIGTGMEYVTAHDSGVALLCKREGIVEFVDANQVRVRTADGSLDQ-------YNITKF 711 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 SN C NQRP+V GD+V +I+ADGPS + G+LALG+N+LVAFM W GYN+ED++ Sbjct: 712 HGSNAGMCYNQRPIVSKGDKVEVGEILADGPSMEQGELALGQNVLVAFMTWEGYNYEDAV 771 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHI++++ ARDTKLGPEEITR+IPNV E+ LKN+DE GII +GAE Sbjct: 772 IMSERLVKDDVYTSIHIDDYDSEARDTKLGPEEITREIPNVGEDALKNLDENGIIRIGAE 831 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +PEE+LL AIFGEKA +VRDTSLRVP G G V DVR+F R Sbjct: 832 VKDGDILVGKVTPKGLTEQSPEERLLHAIFGEKAREVRDTSLRVPHGGGGIVRDVRVFTR 891 Query: 948 -------HGIDKNERSISVEREQIELLAR 969 G++K R V++ +I + Sbjct: 892 AAGDELAPGVNKLVRVYIVQKRKINEGDK 920 Score = 473 bits (1217), Expect = e-130, Method: Composition-based stats. Identities = 179/536 (33%), Positives = 246/536 (45%), Gaps = 85/536 (15%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 T G + ++ I+ G +V G+IL + + + + + Sbjct: 697 RTADGSLDQYNITKFHGSNAGMCYNQRPIVSKGDKVEVGEILADGPS-MEQGELALGQNV 755 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSI------SVEREQIEL 966 L A + + D + V D + H D + + +I Sbjct: 756 LVAFMTWEGYNYEDAVIM----SERLVKDDVYTSIHIDDYDSEARDTKLGPEEITREIPN 811 Query: 967 LARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 + D DE I+ + +IL G+ G L + E R Sbjct: 812 VGEDALKNLDENGIIRIGAEVKDGDILVGKVTPKGLTEQSPEERLLHAIFGEKAR----- 866 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 +V+ + + ++ GD++ PGV ++V+V++ KR Sbjct: 867 ------EVRDTSLRVPHGGGGIVRDV------RVFTRAAGDELAPGVNKLVRVYIVQKRK 914 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 I GDKMAGRHGNKG+VSRI+P EDMPFL DGTPVDI+LNPLGVPSRMN+GQ+ E HLG Sbjct: 915 INEGDKMAGRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPSRMNIGQVLELHLGM 974 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSG 1203 A LG I + + D + D+ + Sbjct: 975 AARELGIYIATPVFDGAQDEDVWGTVAEAGMARDAK------------------------ 1010 Query: 1204 VPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMV 1263 T ++DG TGEPFD V+VG +YM+KL HMV Sbjct: 1011 ----TILYDG--------------------------RTGEPFDNRVSVGVMYMIKLAHMV 1040 Query: 1264 SDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVV 1323 DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDVV Sbjct: 1041 DDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVV 1100 Query: 1324 GRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 GR + YESIV G + G PESF VLVKE+QALGL + + ++ + + D Sbjct: 1101 GRVKTYESIVKGQQISKPGVPESFRVLVKELQALGLDMKVLDANDEEIKLEDMDDD 1156 >gi|227533947|ref|ZP_03963996.1| DNA-directed RNA polymerase subunit beta [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188419|gb|EEI68486.1| DNA-directed RNA polymerase subunit beta [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 1231 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 583/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F Sbjct: 33 LAGHLVNYGKHRTRRSYARIKEVLDLPNLIEIQTNSYQWFL----------DEGLKEMFD 82 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V++ D Y+ PL +TLRL Sbjct: 83 DIMPIDDFQGKLSLEFVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLT---------NH 133 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F + + S ++ Y Sbjct: 134 ETGEIKSQDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFHSETDKNS---RVTY 190 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KDI +VRIDR RK+P+T + ALG S+ +I++ F Sbjct: 191 GTTVIPNRGAWLEYETDAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLM 250 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE +S + L K + +G Sbjct: 251 LTLEKD-VHKNTDDSRTDEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGR 309 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE + + +TGE+ + G +D + ++++ Sbjct: 310 YKVNKKLSLKTRLLNQVLAETLADPDTGEVIAQKGTKVDRQVMDKLAPYL---------- 359 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 DR D Y+ G V+ +S+ + DK Sbjct: 360 ------------------DRDDFKTITYQPSDQGVVTDPIELQSIKVYSQVTPDKE---- 397 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N V+HI D++A + ++L+ G G+IDDID+LGNRR+RSVGE+ Sbjct: 398 -----INLIGNGHIGKKVKHIVPADVLASMNYFLNLQEGLGSIDDIDHLGNRRIRSVGEL 452 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 453 LQNQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 512 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A Sbjct: 513 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA 572 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 VN YGFIETPYR+V KVT+ + YL+A EE+N +AQANS L++DGSF +E V R Sbjct: 573 VVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDETVLAR 632 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 I + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 633 HKDNNIEISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVNPHA 692 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME A SG A++A AG VE VDA +I +R +G LD Y LMKF+ Sbjct: 693 PLVGTGMEYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALDA-------YNLMKFK 745 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V +GD V ++IIADGP+ G+LALG+N ++AFM W+ YN+ED+++ Sbjct: 746 RSNAGKNYNQRPIVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIV 805 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEE+E ARDTKLGPEE+TR+IPNV EE LK++DE G++ VGAEV Sbjct: 806 LSERLVKDDVYTSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEV 865 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R Sbjct: 866 RDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRE 925 Query: 949 GID 951 D Sbjct: 926 AGD 928 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 236/1072 (22%), Positives = 385/1072 (35%), Gaps = 102/1072 (9%) Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D + I + E F S+ I + + ++ + Sbjct: 207 DAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRT 266 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 +AL DIY +RPG+ T + S+ FFD +YDL++VGR K+N +L+L T + Sbjct: 267 DEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQV 326 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + L + + + ++ R + ++ Sbjct: 327 L-----------AETLADPDTGEVIAQKGTKVDRQVMDKLAPYLDRDDFKTITYQPSDQG 375 Query: 491 SSVDI---DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 D S+ + ++ + ++ + S LG Sbjct: 376 VVTDPIELQSIKVYSQVTPDKEINLIGNGHIGKKVKHIVPADVLASMNYFLNLQEGLGSI 435 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 +R V + + + S+ A V I R V Sbjct: 436 DDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMSIQDTATVTPQQLI--NIRPVVA 493 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + + + L + + + Sbjct: 494 SIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYG 549 Query: 668 PKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 + I + + S V+ + + V ++ + A Sbjct: 550 RMCPIETPEGPNIGLINSLASYAVVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNY 609 Query: 727 IVAKRA----GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 IVA+ VD + + K + C+ Sbjct: 610 IVAQANSPLNDDGSFVDETVLARHKDNNIEISPDKVDYMDVSPKQVVAVATACIP----- 664 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + +D ++ A+ A + G ++ + +++ + T Sbjct: 665 ----FLENDDSNRALMGANMQRQAVPLVNPHAPLVGTGMEYKAAHDSGTAVLANNAGTVE 720 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +++ ++ R + G + + KN ++ I+ +G V D ++ Sbjct: 721 YVDAKQIRVRR-EDGALDAYNLMKFKRSNAGKNYNQRPIVTIGDHV-DVDEIIADGPAMQ 778 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + + + A + D + V D + H + + + Sbjct: 779 NGELALGQNPIIAFMTWNMYNYEDAIVL----SERLVKDDVYTSIHIEEYESEARDTKLG 834 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E+ + + L + G G K T +S R Sbjct: 835 PEEVTREIPNVGEEALKD--LDEFGVVRVGAEVRDGDILVGKVTPKGVTELSAEERLLHA 892 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 F + +V+ + + KI + GD++ PGV +V+V++ KR Sbjct: 893 IFGEKAREVRDTSLRVPHGGGGIIQDV------KIFTREAGDELSPGVNMMVRVYITQKR 946 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG VS ++P EDMP+L DGTPVDI L+P+GVPSRMN+GQ+ E HLG Sbjct: 947 KIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVPSRMNIGQVLELHLG 1006 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG + + + D + D+ Sbjct: 1007 MAARNLGIHVATPVFDGANDKDLW------------------------------------ 1030 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 A + A + G+S+LYDG TGEPF+ V+VG +Y +KL+HM Sbjct: 1031 -----------ATVKE-------AGMASDGKSVLYDGRTGEPFENRVSVGIMYYMKLSHM 1072 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDV Sbjct: 1073 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDV 1132 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 VGR + YE+IV G + G PESF VLVKE+QALGL + + + K Sbjct: 1133 VGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGLDMKVLGADKKEIELR 1184 >gi|121534751|ref|ZP_01666572.1| DNA-directed RNA polymerase, beta subunit [Thermosinus carboxydivorans Nor1] gi|121306771|gb|EAX47692.1| DNA-directed RNA polymerase, beta subunit [Thermosinus carboxydivorans Nor1] Length = 1276 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 450/952 (47%), Positives = 599/952 (62%), Gaps = 103/952 (10%) Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71 RVR + K E++D+P+LIE+QK SY+ FL EGLQ F+ + PI F+G Sbjct: 10 RVRYSYAKINEVLDMPNLIEIQKNSYNWFL----------KEGLQEIFRDISPIQDFTGN 59 Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131 +L F + PK+ V++C RD+TY+ PL++++RLI K +IKEQ ++ Sbjct: 60 LVLSFEGFTLGEPKYSVEECKERDVTYSAPLRVSVRLI---------NKETGEIKEQEVF 110 Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191 MGD PLMT++GTF+I G +R++VSQL RSPG ++ SGK LY IIP++G W Sbjct: 111 MGDFPLMTENGTFIINGAERVIVSQLVRSPGAYYGETID---TSGKKLYNATIIPNRGAW 167 Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLS 250 +++E D+ D++ VR+DR RK+PVT + ALG S IL F + + Sbjct: 168 LELETDANDVVSVRVDRTRKLPVTVLIRALGWASNGAILDLFNDDVRIRATLERDSTSSK 227 Query: 251 AADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS--------D 301 L+ K + GE +E+ +L L K + +G Sbjct: 228 EEALVEIYK------RLRPGEPPTVENATQLLESLFFDPKRYDLAAVGRYKLTKKLGWRR 281 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 + G + E I+N ETGEI + G V+DEK I S + + L Sbjct: 282 RIMGKTLHEPIINKETGEIIVPEGTVVDEKVAARIEASGVFNHEGL-------------- 327 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 I +R D V +V N L Sbjct: 328 ---------------IEFKIRQKD-----------------------GAVIKVIANPSL- 348 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 P R I +EDIIA I L++L +G G +DDID+LGNRR+RSVGE+L+NQ+R+GL R Sbjct: 349 ---PYSHRTITREDIIAAISYLLNLMDGHGKVDDIDHLGNRRLRSVGELLQNQFRIGLSR 405 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 MER +KER++ DID + PQ LIN +PVV+A+ EFF SSQLSQ + N L+ +TH RRL Sbjct: 406 MERVVKERMTIQDIDVITPQALINIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRL 465 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+ SL++FAR+N +GFIETP Sbjct: 466 SALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTFARINEFGFIETP 525 Query: 602 YRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPRE 659 YRKV + +VT++V YL+A EE+ IAQAN + EDG F + V R + ++VP E Sbjct: 526 YRKVDKENRRVTDEVHYLTADEEDEVVIAQANEEISEDGWFVQPRVTVRYKHDILVVPAE 585 Query: 660 KIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVV 719 ++D++D SPKQVVSIA ++IPFLENDD+NR LMG NMQRQAVPLLK +AP VGTGME Sbjct: 586 QVDYMDVSPKQVVSIATAMIPFLENDDANRALMGANMQRQAVPLLKTQAPLVGTGMEYKA 645 Query: 720 AKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQR 779 A SG ++AK AG+VE+V A I +R+ +G LD Y+L+K+ RSNQ TC+NQ+ Sbjct: 646 ACDSGVVVLAKNAGVVEKVTATEIQVRTDKGSLD-------TYKLLKYMRSNQGTCINQK 698 Query: 780 PLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVF 839 P+V G V + +ADGPST+ G+LALG N+LVAFMPW GYN+ED++L+SE +V ED+F Sbjct: 699 PIVYKGQRVEKGQPLADGPSTNNGELALGYNVLVAFMPWEGYNYEDAILLSEELVKEDIF 758 Query: 840 TSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKIT 899 TSIHIEE+E ARDTKLGPEEITRDIPNVSE+ L+++DE GII VGAEV PGDILVGK+T Sbjct: 759 TSIHIEEYECDARDTKLGPEEITRDIPNVSEDVLRDLDERGIIRVGAEVRPGDILVGKVT 818 Query: 900 PKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 PKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV++F R D Sbjct: 819 PKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGKIVDVKVFTRENGD 870 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 208/537 (38%), Positives = 276/537 (51%), Gaps = 46/537 (8%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 T G + + + + I++ I+ G V G L + + + Sbjct: 672 RTDKGSLDTYKLLKYMRSNQGTCINQKPIVYKGQRVEKGQPLADGPST-NNGELALGYNV 730 Query: 913 LRAIFGEKAVDVRDTSL------RVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 L A + + D L + S + + R E E Sbjct: 731 LVAFMPWEGYNYEDAILLSEELVKEDIFTSIHIEEYECDARDTKLGPEEITRDIPNVSED 790 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 + RD DE+ I+ R +IL G+ G L + E R Sbjct: 791 VLRDL-DERGIIRVGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAR-------- 841 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 E K+ + GD++PPGV ++V+V++A KR I Sbjct: 842 ---------EVRDTSLRVPHGEAGKIVDVKVFTRENGDELPPGVNQLVRVYIAQKRKISE 892 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG+VSRI+P EDMPFL DG PV IVLNPLGVPSRMN+GQ+ ETHLGWA Sbjct: 893 GDKMAGRHGNKGVVSRIMPVEDMPFLPDGRPVQIVLNPLGVPSRMNIGQVLETHLGWAAH 952 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG +IK++ D + + ++GV + Sbjct: 953 ALGLQIKNM---------------------DPNVEQRLREVGYDVDKHGMLKPGEAGVHL 991 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA EE + L+MA L E+G+SILYDG TGEPFD PVTVGYIYMLKL H+V DK Sbjct: 992 ATPVFDGAREEDVFKTLKMAGLPENGKSILYDGRTGEPFDNPVTVGYIYMLKLAHLVDDK 1051 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR Sbjct: 1052 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRV 1111 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKC 1383 + YE+IV G + E G PESF VL+KE+Q++GL + + + + E D ++ Sbjct: 1112 KTYEAIVKGENVPEPGVPESFKVLIKELQSIGLDVKVLSEDAQEILIRESDEDIHET 1168 >gi|5726633|gb|AAD48492.1|AF172323_1 RNA polymerase beta subunit [Bacillus licheniformis] Length = 1105 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 431/954 (45%), Positives = 600/954 (62%), Gaps = 78/954 (8%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R+ + + E++++P+LIE+Q +SY FL +EGL+ F+ + PI F+G Sbjct: 1 HRQRRSYARISEVLELPNLIEIQTSSYQWFL----------DEGLREMFQDISPIEDFTG 50 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 LEF+ Y PK+ V++ RD+TY+ PL++ +RLI K ++K+Q + Sbjct: 51 NLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLI---------NKETGEVKDQDV 101 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 +MGD P+MT GTF+I G +R++VSQL RSP ++F G+ +GK + +IP++G Sbjct: 102 FMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGFTATVIPNRGA 158 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPL 249 W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ D Sbjct: 159 WLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGENEYLRNTLDKDNTEN 218 Query: 250 SAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSDC------ 302 + L+ + GE +E+ K L K + +G Sbjct: 219 TDQALL------EIYERLRPGEPPTVENAKSLLESRFFDPKRYDLASVGRYKINKKLHIK 272 Query: 303 --LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 L +AE +V+ ETGEI E G ++D ++L++ V N Sbjct: 273 SGLFNQRLAETLVDPETGEILAEKGAILDRRTLDK-------------VLPYLENGIGFK 319 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 L + + L ++ P D G +N+ Sbjct: 320 KLYPNGGVVEDEVTLQSIKIYAPTD------------------------QEGEQTINVIG 355 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 N + V++I DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL Sbjct: 356 NAYIEEGVKNITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLS 415 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N L+ +T+ RR Sbjct: 416 RMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTYKRR 475 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+VN +GFIET Sbjct: 476 LSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGFIET 535 Query: 601 PYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 PYR+V GKVT + YL+A EE+N +AQAN+ L++DGSF ++ + R GE +VP+ Sbjct: 536 PYRRVDPETGKVTPRIDYLTADEEDNYVVAQANARLNDDGSFVDDSIVARFRGENTVVPK 595 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL++ E+P VGTGME V Sbjct: 596 DRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPESPIVGTGMEYV 655 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIR-SVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 AK SGA ++ + GIVE+V+A I +R E D +D Y L+KF RSNQ TC N Sbjct: 656 SAKDSGAVVICRHPGIVERVEAKNIWVRRYEEVDGQKVKGNLDKYSLLKFVRSNQGTCYN 715 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 QRP+V VGDEV + +I+ADGPS + G+LALGRN++V FM W GYN+ED++++SER+V +D Sbjct: 716 QRPIVSVGDEVEKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDD 775 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 V+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ L+N+DE GII VGAEV GD+LVGK Sbjct: 776 VYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLVGK 835 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 +TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR D Sbjct: 836 VTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNREDGD 889 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 247/1091 (22%), Positives = 414/1091 (37%), Gaps = 125/1091 (11%) Query: 267 IDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGD 326 I+ E+VI S + + S K G T+ + + +Y+ Sbjct: 117 INGAERVIVSQLVRSPSVYFSGKVDKNGKKGFTATVIPNRGAWLEYETDAKDVVYVRIDR 176 Query: 327 VIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDV 386 + + +D + N Y+RNTL D ++ ALL+IY +RPG+ Sbjct: 177 TRKLPVTVLLRALGFGSDQEI-IDLIGENEYLRNTLDKDNTENTDQALLEIYERLRPGEP 235 Query: 387 STFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHI--------RKEDIIA 438 T A+S+ FFD +YDL++VGR K+N +L++ + + + E + Sbjct: 236 PTVENAKSLLESRFFDPKRYDLASVGRYKINKKLHIKSGLFNQRLAETLVDPETGEILAE 295 Query: 439 IIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM--------ERSIKERI 490 IL K + +G +++ G +++++ L +++ E++I Sbjct: 296 KGAILDRRTLDKVLPYLENGIGFKKLYPNGGVVEDEVTLQSIKIYAPTDQEGEQTINVIG 355 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 ++ + V + +S + +H+ + + L + G++ Sbjct: 356 NAYIEEGVKNITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLS 415 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 R V R + +T+ L++ A + + + + Sbjct: 416 RMERVVRER---------MSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNP 466 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 ++ Y L E + + + Sbjct: 467 LAELTY---------------------KRRLSALGPGGLTRERAGMEVRDVHYSHYGRMC 505 Query: 671 VVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAI-- 727 + I + + S + + E V ++ + A + Sbjct: 506 PIETPEGPNIGLINSLSSFAKVNRFGFIETPYRRVDPETGKVTPRIDYLTADEEDNYVVA 565 Query: 728 --VAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 A+ VD + E + P + K S C+ Sbjct: 566 QANARLNDDGSFVDDSIVARFRGENTVVPKDRVDYMDVSPKQVVSAATACIPFL----EN 621 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS--ERMVSEDVFTSIH 843 D+ R + A+ + + ++ M + +++I +V +I Sbjct: 622 DDSNRALMGANMQRQAVPLMQPESPIVGTGMEYVSAKDSGAVVICRHPGIVERVEAKNIW 681 Query: 844 IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGE 903 + +E + G + + V ++ I+ VG EV G+IL + + Sbjct: 682 VRRYEEVDGQKVKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGDEVEKGEILADGPS-MEK 740 Query: 904 SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ 963 + ++ + D + +S +V ++ I++ E + Sbjct: 741 GELALGRNVMVGFMTWDGYNYEDAII-----MSERLVKDDVYTSIHIEEYESEARDTKLG 795 Query: 964 IELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023 E + RD + RN+ R I G G K T ++ R Sbjct: 796 PEEITRDIPNVGEDALRNLDER-GIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAI 854 Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083 F + +V+ + K+ + GD++PPGV ++V+V++ KR Sbjct: 855 FGEKAREVRDTSLRVPHGGGGII------LDVKVFNREDGDELPPGVNQLVRVYIVQKRK 908 Query: 1084 IQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 I GDKMAGRHGNKG++S+ILP EDMP+L DGTP+DI+LNPLGVPSRMN+GQ+ E HLG Sbjct: 909 ISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGM 968 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSG 1203 A LG + S + D D+ Sbjct: 969 AARRLGLHVASPVFDGAREEDVWETLEEAGMSRDAK------------------------ 1004 Query: 1204 VPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMV 1263 T ++DG TGEPFD V+VG +YM+KL HMV Sbjct: 1005 ----TVLYDG--------------------------RTGEPFDNRVSVGIMYMIKLAHMV 1034 Query: 1264 SDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVV 1323 DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVV Sbjct: 1035 DDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVV 1094 Query: 1324 GRTRVYESIVA 1334 GR + YE+IV Sbjct: 1095 GRVKTYEAIVK 1105 >gi|191639439|ref|YP_001988605.1| DNA-directed RNA polymerase subunit beta [Lactobacillus casei BL23] gi|226699414|sp|B3WAM8|RPOB_LACCB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|190713741|emb|CAQ67747.1| DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (Transcriptase subunit beta) (RNA polymerase subunit beta) [Lactobacillus casei BL23] Length = 1199 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 422/963 (43%), Positives = 583/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++D+P+LI++Q SY FL +EGL+ F Sbjct: 1 MAGHLVNYGKHRTRRSYARIKEVLDLPNLIKIQTNSYQWFL----------DEGLKEMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V++ D Y+ PL +TLRL Sbjct: 51 DIMPIDDFQGKLSLEFVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F + + + ++ Y Sbjct: 102 ETGEIKSQDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFHSETDK---NSRVTY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KDI +VRIDR RK+P+T + ALG S+ +I++ F Sbjct: 159 GTTVIPNRGAWLEYETDAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLM 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE +S + L K + +G Sbjct: 219 LTLEKD-VHKNTDDSRTDEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE + + +TGE+ + G +D + ++++ Sbjct: 278 YKVNKKLSLKTRLLNQVLAETLADPDTGEVIAQKGTKVDRQVMDKLAPYL---------- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 DR D Y+ G V+ +S+ + DK Sbjct: 328 ------------------DRDDFKTITYQPSDQGVVTDPIELQSIKVYSQVTPDKE---- 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N V+HI D++A + ++L+ G G+IDDID+LGNRR+RSVGE+ Sbjct: 366 -----INLIGNGHIGKKVKHIVPADVLASMNYFLNLQEGLGSIDDIDHLGNRRIRSVGEL 420 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 421 LQNQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 480 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A Sbjct: 481 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA 540 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 VN YGFIETPYR+V KVT+ + YL+A EE+N +AQANS L++DGSF +E V R Sbjct: 541 VVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDETVLAR 600 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 I + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 601 HKDNNIEISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVNPHA 660 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME A SG A++A AG VE VDA +I +R +G LD Y LMKF+ Sbjct: 661 PLVGTGMEYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALDA-------YNLMKFK 713 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V +GD V ++IIADGP+ G+LALG+N ++AFM W+ YN+ED+++ Sbjct: 714 RSNAGKNYNQRPIVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIV 773 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEE+E ARDTKLGPEE+TR+IPNV EE LK++DE G++ VGAEV Sbjct: 774 LSERLVKDDVYTSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEV 833 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R Sbjct: 834 RDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRE 893 Query: 949 GID 951 D Sbjct: 894 AGD 896 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 236/1072 (22%), Positives = 385/1072 (35%), Gaps = 102/1072 (9%) Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D + I + E F S+ I + + ++ + Sbjct: 175 DAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRT 234 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 +AL DIY +RPG+ T + S+ FFD +YDL++VGR K+N +L+L T + Sbjct: 235 DEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQV 294 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + L + + + ++ R + ++ Sbjct: 295 L-----------AETLADPDTGEVIAQKGTKVDRQVMDKLAPYLDRDDFKTITYQPSDQG 343 Query: 491 SSVDI---DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 D S+ + ++ + ++ + S LG Sbjct: 344 VVTDPIELQSIKVYSQVTPDKEINLIGNGHIGKKVKHIVPADVLASMNYFLNLQEGLGSI 403 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 +R V + + + S+ A V I R V Sbjct: 404 DDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMSIQDTATVTPQQLI--NIRPVVA 461 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + + + L + + + Sbjct: 462 SIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYG 517 Query: 668 PKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 + I + + S V+ + + V ++ + A Sbjct: 518 RMCPIETPEGPNIGLINSLASYAVVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNY 577 Query: 727 IVAKRA----GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 IVA+ VD + + K + C+ Sbjct: 578 IVAQANSPLNDDGSFVDETVLARHKDNNIEISPDKVDYMDVSPKQVVAVATACIP----- 632 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + +D ++ A+ A + G ++ + +++ + T Sbjct: 633 ----FLENDDSNRALMGANMQRQAVPLVNPHAPLVGTGMEYKAAHDSGTAVLANNAGTVE 688 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +++ ++ R + G + + KN ++ I+ +G V D ++ Sbjct: 689 YVDAKQIRVRR-EDGALDAYNLMKFKRSNAGKNYNQRPIVTIGDHV-DVDEIIADGPAMQ 746 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + + + A + D + V D + H + + + Sbjct: 747 NGELALGQNPIIAFMTWNMYNYEDAIVL----SERLVKDDVYTSIHIEEYESEARDTKLG 802 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E+ + + L + G G K T +S R Sbjct: 803 PEEVTREIPNVGEEALKD--LDEFGVVRVGAEVRDGDILVGKVTPKGVTELSAEERLLHA 860 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 F + +V+ + + KI + GD++ PGV +V+V++ KR Sbjct: 861 IFGEKAREVRDTSLRVPHGGGGIIQDV------KIFTREAGDELSPGVNMMVRVYITQKR 914 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG VS ++P EDMP+L DGTPVDI L+P+GVPSRMN+GQ+ E HLG Sbjct: 915 KIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVPSRMNIGQVLELHLG 974 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG + + + D + D+ Sbjct: 975 MAARNLGIHVATPVFDGANDKDLW------------------------------------ 998 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 A + A + G+S+LYDG TGEPF+ V+VG +Y +KL+HM Sbjct: 999 -----------ATVKE-------AGMASDGKSVLYDGRTGEPFENRVSVGIMYYMKLSHM 1040 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDV Sbjct: 1041 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDV 1100 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 VGR + YE+IV G + G PESF VLVKE+QALGL + + + K Sbjct: 1101 VGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGLDMKVLGADKKEIELR 1152 >gi|317126848|ref|YP_004093130.1| DNA-directed RNA polymerase subunit beta [Bacillus cellulosilyticus DSM 2522] gi|315471796|gb|ADU28399.1| DNA-directed RNA polymerase, beta subunit [Bacillus cellulosilyticus DSM 2522] Length = 1179 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 437/959 (45%), Positives = 601/959 (62%), Gaps = 68/959 (7%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++D+P+LIE+Q ASY FL +EG++ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARISEVLDLPNLIEIQTASYQWFL----------DEGIREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G +LEF+ Y PK+ V++ RD+TY+ PL++ +RLI K Sbjct: 51 DISPIEDFTGNLVLEFIDYSLGEPKYSVEESKERDVTYSAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++++ + +GK + Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYYNKKVDK---NGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKI--V 237 +IP++G W+++E D+KDI++VRIDR RK+PVT L ALG ++ EI+ Sbjct: 159 TATVIPNRGAWLELETDAKDIVYVRIDRTRKIPVTVLLRALGFGTDQEIIELLGEDEYLR 218 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKF 295 + D A + ++ + ++ES L + K K Sbjct: 219 NTLEKDNTDNSEKALLEIYERLRPGEPPTVENAKSLLESRFFDPKRYDLANVGRYKMNKK 278 Query: 296 LGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN 355 L I D L +AE +V+ +TGE+ E G VID + L+++ ++ + Sbjct: 279 LHI-KDRLFNQRLAETLVDPDTGEVLAEEGAVIDRRLLDKLIPYLENNVG--FKHYTLRG 335 Query: 356 AYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVK 415 I +S+ D+ + +G Sbjct: 336 GVIEE---------------------------DEVELQSILITNPESVDEQPIRVLGNGV 368 Query: 416 MNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQY 475 + V++I DIIA I +L +G G DDID+LGNRR+RSVGE+L+NQ+ Sbjct: 369 VEKA--------VKNITVADIIASINYFFNLLHGVGNTDDIDHLGNRRLRSVGELLQNQF 420 Query: 476 RLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRI 535 R+GL RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLSQ + N L+ + Sbjct: 421 RIGLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAEL 480 Query: 536 THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+VN + Sbjct: 481 THKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEF 540 Query: 596 GFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEE 653 GF+ETPYRKV +VT+ YL+A EE+N +AQAN+ LDE+G+F +E + CR GE Sbjct: 541 GFMETPYRKVDHETGRVTSQFDYLTADEEDNYVVAQANAKLDENGAFMDENIICRFRGEN 600 Query: 654 ILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGT 713 I+V R+++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLLK EAP VGT Sbjct: 601 IIVSRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLKPEAPLVGT 660 Query: 714 GMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG-DLDPSTSGVDIYRLMKFQRSNQ 772 GME V AK SGAA+V+K G VE+V A + IR VE D + + Y L KF+RSNQ Sbjct: 661 GMEYVSAKDSGAAVVSKVRGRVERVSAKYVEIRRVETVDGNEVEGDIVRYNLQKFERSNQ 720 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 TC NQRP+V G+ V +I+ADGPS +LG++ALGRN++V FM W GYN+ED++++SER Sbjct: 721 GTCYNQRPIVSEGNFVEIGEILADGPSMELGEMALGRNVMVGFMTWDGYNYEDAIILSER 780 Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V +DV+TS+HIEE+E ARDTKLGPEEITRDIPNV E+ LKN+DE GII VGAEV GD Sbjct: 781 LVKDDVYTSVHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRVGAEVKDGD 840 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 ILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLR P G G V+DV++FNR D Sbjct: 841 ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIVLDVKVFNREDGD 899 Score = 486 bits (1251), Expect = e-134, Method: Composition-based stats. Identities = 165/424 (38%), Positives = 223/424 (52%), Gaps = 58/424 (13%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG---FKKSTVL 1008 K++ SV E+ E ARD + R+I + + L + + K +L Sbjct: 783 KDDVYTSVHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRVGAEVKDGDIL 842 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR-FKNKIEKIQWGDDMP 1067 + + + + ++ + + K+ + GD++P Sbjct: 843 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIVLDVKVFNREDGDELP 902 Query: 1068 PGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV 1127 PGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMP+L DGTP+DI+LNPLGV Sbjct: 903 PGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGV 962 Query: 1128 PSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISD 1187 PSRMN+GQ+ E HLG A LG + S + D D+ Sbjct: 963 PSRMNIGQVLELHLGMAARNLGIHVASPVFDGAREEDVWGTLEEAGMAR----------- 1011 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 DG LYDG TGEPFD Sbjct: 1012 ------------------------DGKTV-------------------LYDGRTGEPFDN 1028 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1029 RVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1088 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 AY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE+Q+LG+ + + +S Sbjct: 1089 AYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGMDVKMLSSN 1148 Query: 1368 TKNS 1371 + Sbjct: 1149 EEEI 1152 >gi|222152109|ref|YP_002561269.1| DNA-directed RNA polymerase beta subunit [Macrococcus caseolyticus JCSC5402] gi|254765294|sp|B9E8Q5|RPOB_MACCJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|222121238|dbj|BAH18573.1| DNA-directed RNA polymerase beta subunit [Macrococcus caseolyticus JCSC5402] Length = 1180 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 444/964 (46%), Positives = 607/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M ++ G R R+ + + EI+++P+LIE+Q SYD FL EGL FK Sbjct: 1 MTGQLIQYGRHRKRRSYARISEILELPNLIEIQTKSYDWFL----------KEGLIEMFK 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y+ PK+D+D+ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYKLGEPKYDLDESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +GK+ + Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFN---DKVDKNGKVSF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD++ VRIDR RK+P+T L ALG ++ EI+ Sbjct: 159 GATVIPNRGAWLEYETDAKDVVFVRIDRTRKLPITVLLRALGFSTDQEIIDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 D + A L+ + GE +E+ K L K + +G Sbjct: 219 NALDKDNTESTEAALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI E G ++D ++L++I I +L + Sbjct: 273 YKMNKKLHLKHRLFNQVLAEPIVNTETGEIVAEEGTLLDRRNLDQI-------IDVLESN 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N V D + D ++I V Y Sbjct: 326 A--------NQKVYDLDNGLLDEPIEIQSV-----------------------KVYVPGD 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N D+V+ I DI++ + +L G G DDID+LGNRR+RSVGE+ Sbjct: 355 EEKRTTTIIGNAFPDDEVKCITPADILSSVSYFFNLLAGVGFTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +SV PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSLQDTESVTPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV VT+ + YL+A EE+ +AQAN+ LD++G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDIETNTVTSQIDYLTADEEDAYVVAQANARLDDNGKFLDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G+ ++ RE++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGDNTVMARERMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAA+VAK G VE V+A +I +R + E + +D+Y+L KF Sbjct: 655 PFVGTGMEHVAARDSGAAVVAKYKGRVEHVEARQIKVRRIVEEGGKEIETDLDVYKLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSN TC NQRP+V+ G+ V + +I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 ARSNSGTCYNQRPIVEAGNIVTKGEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVS+ LKN+D+ GII VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSDNALKNLDDRGIIFVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VRDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGADGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 170/442 (38%), Positives = 229/442 (51%), Gaps = 71/442 (16%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEILCGQNAVSGPKG 1001 K++ S+ E+ E ARD + R+I I G G Sbjct: 782 KDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSDNALKNLDDRGIIFVGAEVRDGDIL 841 Query: 1002 FKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQ 1061 K T ++ R F + +V+ + + K+ + Sbjct: 842 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGADGIV------LDVKVFNRE 895 Query: 1062 WGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIV 1121 GD++PPGV ++V+V++ KR I GDKM GRHGNKG++SRILP EDMPF+ DGTP+DI+ Sbjct: 896 DGDELPPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISRILPEEDMPFMPDGTPIDIM 955 Query: 1122 LNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSH 1181 LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 956 LNPLGVPSRMNIGQVLELHLGMAAKNLGLHVASPVFDGANDEDVWST------------- 1002 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLT 1241 + A + G +++LYDG T Sbjct: 1003 ------------IEEAGMARDG-----------------------------KTVLYDGRT 1021 Query: 1242 GEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWC 1301 GEPFD V+VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1022 GEPFDNRVSVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA 1081 Query: 1302 IQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361 ++AYGAAY LQE+LT KSDD VGR + YE+IV G + G PESF VL+KE+Q+LGL + Sbjct: 1082 LEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENIPRPGVPESFRVLMKELQSLGLDV 1141 Query: 1362 DLENSRTKNSAKME-EIPDFNK 1382 + +++ + + E DF Sbjct: 1142 KVMDNKDEEIEMRDLEDDDFVD 1163 >gi|148544705|ref|YP_001272075.1| DNA-directed RNA polymerase subunit beta [Lactobacillus reuteri DSM 20016] gi|172048240|sp|A5VLL4|RPOB_LACRD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|148531739|gb|ABQ83738.1| DNA-directed RNA polymerase subunit beta [Lactobacillus reuteri DSM 20016] Length = 1202 Score = 856 bits (2211), Expect = 0.0, Method: Composition-based stats. Identities = 420/964 (43%), Positives = 588/964 (60%), Gaps = 80/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++++P+LIE+Q SY+ F+ +GL+ F Sbjct: 1 MAGHLVKYGKHRTRRSYSRIKEVLELPNLIEIQTDSYNWFM----------EKGLREMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ VD+ D Y+ PL +TLRL Sbjct: 51 DIMPIDDFQGKLSLEFVDYQLLEPKYTVDEAREHDANYSAPLHVTLRLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG+++ + + +G+ Y Sbjct: 102 ETGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYSEENDK---NGRPNY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFY-PKIVY 238 IP++G W++ E D+K++ +VRIDR RK+P+T + ALG S+ EI+ F Sbjct: 159 GATFIPNRGAWLEYETDAKNVSYVRIDRTRKLPMTELIRALGFGSDDEIIDMFGGDSETL 218 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK--- 294 S D +A D V + + GE +S + L + K + Sbjct: 219 SLTLDKD-VHKNAEDSRVEEALKDIYERLRPGEPKTADSARSLLTARFFDPKRYDMAPVG 277 Query: 295 -----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYV 349 + L G +AE + + +TGE+ + GD + ++ L ++ P L Sbjct: 278 RYKTNKKLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVTKELLNKLE-------PYLDR 330 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D Y +A++ + + + + D D+ Sbjct: 331 DDFKTITY----------TPSDEAVVTEPVKL-----------QKILVYSKNDPDR---- 365 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 + + N P + +HI DI+A + +L+ G G+ DDID+LGNRR+RSVGE Sbjct: 366 -----VVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEGIGSTDDIDHLGNRRIRSVGE 420 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +L+NQ+R+GL RMER ++ER+S D D+V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 421 LLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQT 480 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+ Sbjct: 481 NPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSY 540 Query: 590 ARVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 ARVN YGFIETPYR+V D KVT+ + YL+A EE+N IAQAN+ L++DGSF ++ V Sbjct: 541 ARVNKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNFIIAQANTPLNDDGSFVDDQVMA 600 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R + I E ID++D SPKQVVS+A++ IPFLENDDSNR LMG NMQRQAVPL+ Sbjct: 601 RDKDDYIETSVENIDYMDVSPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLINPH 660 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 AP V TG++ A SG A++AK+ G VE VDA + +R +G LD Y+LMKF Sbjct: 661 APLVSTGIDYKAAHDSGVAMIAKKPGTVEYVDAREVRVREEDGTLD-------TYKLMKF 713 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN NQRP+VKVG+ V +D++ADGPS + G+LALG+N L+AFM W GYNFED++ Sbjct: 714 RRSNGGKNYNQRPIVKVGEHVDADDVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAI 773 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 I+ER+V +DV+TSIHIE +E AR+TKLGPEE+TR+IPNV ++ LK++DE GI+ VGAE Sbjct: 774 AINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVGDDALKDLDENGIVRVGAE 833 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V+ GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G + DV++F R Sbjct: 834 VHDGDILVGKVTPKGMTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTR 893 Query: 948 HGID 951 D Sbjct: 894 ENGD 897 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 223/1067 (20%), Positives = 369/1067 (34%), Gaps = 172/1067 (16%) Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 ++ ++ ++AL DIY +RPG+ T A S+ FFD +YD++ VGR K N Sbjct: 224 KDVHKNAEDSRVEEALKDIYERLRPGEPKTADSARSLLTARFFDPKRYDMAPVGRYKTNK 283 Query: 419 RLNLD-------------TPDDVRHI-------RKEDIIAIIKILVDLRNGKGTIDDIDN 458 +L L PD + KE + + L T D Sbjct: 284 KLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVTKELLNKLEPYLDRDDFKTITYTPSDE 343 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL----INAKPVVSAVC 514 + ++L + R+ I ++ + P D+ + + Sbjct: 344 AVVTEPVKLQKILVYS-KNDPDRVVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEGIG 402 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 L R A + V + + V P I P Sbjct: 403 STDDIDHLGNRRIRSVGELLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVA 462 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLS 618 S G + N G + R V D T+ Sbjct: 463 SIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCP 522 Query: 619 AMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR--EKIDFIDASPKQVVSIAA 676 E I NS + + +KID++ A + IA Sbjct: 523 IETPEGPNIGLINSLSSYARVNKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNFIIAQ 582 Query: 677 SLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 + P +D + M R + ++ T +E++ V Sbjct: 583 ANTPL---NDDGSFVDDQVMAR-------DKDDYIETSVENIDYMD-------VSPKQVV 625 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 V + I + QR PLV G Sbjct: 626 SVASACIPFLENDDSNRALMGA-------NMQRQAVPLINPHAPLVSTGI---------- 668 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 +++ + M+++ T +++ EV R+ + Sbjct: 669 -------------------------DYKAAHDSGVAMIAKKPGTVEYVDAREVRVRE-ED 702 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + + G KN ++ I+ VG V+ D+L + + + + L A Sbjct: 703 GTLDTYKLMKFRRSNGGKNYNQRPIVKVGEHVDADDVLADGPS-MEQGELALGQNPLIAF 761 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D V V + + E + E E + DD Sbjct: 762 MTWQGYNFEDAIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTRE-IPNVGDDALK 820 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 LD N R+ + + + G K T LS++ Sbjct: 821 DLDENGIVRVGAEVHDGDILVGKVTPKGMTELSAEE------------------------ 856 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 +I ++ + + G+++ VKVF GD+++ Sbjct: 857 ------RLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTREN-----GDELSP---- 901 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG-WACVGLGKKIKSL 1155 G+ + + R+ + Q + +G G K Sbjct: 902 -GVNTMV--------------------------RVYIAQKRKIQVGDKMSGRHGNKGTVS 934 Query: 1156 INDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGAD 1215 I + + P + ++ ++ +++ + + G+ ++TPVFDGA Sbjct: 935 IVVPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQLLELHLGMAARRLGIHMATPVFDGAS 994 Query: 1216 EEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSY 1275 ++ + +R + E G++ILYDG TGEPF+ + VG ++ LKL HMV DK++ARSTG Y Sbjct: 995 DKDVWDAVRESGFPEDGKTILYDGRTGEPFENRIAVGSMHYLKLAHMVDDKIHARSTGPY 1054 Query: 1276 SLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAG 1335 SLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD VGR R Y++I+ G Sbjct: 1055 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVRTYDAIING 1114 Query: 1336 NDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 + G PESF VLVKE+QALGL + + + K D ++ Sbjct: 1115 QPIPKPGVPESFRVLVKELQALGLDMKVLDGNNKEIQLKNMDEDDDE 1161 >gi|304315932|ref|YP_003851077.1| DNA-directed RNA polymerase subunit beta [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777434|gb|ADL67993.1| DNA-directed RNA polymerase, beta subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1237 Score = 856 bits (2211), Expect = 0.0, Method: Composition-based stats. Identities = 442/951 (46%), Positives = 592/951 (62%), Gaps = 64/951 (6%) Query: 14 RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAM 73 R F + E++++P+LIEVQK SY FL EGL+ F+ + PI +F+G Sbjct: 12 RMSFARIEEVLEMPNLIEVQKNSYKWFL----------EEGLREVFRDISPIESFTGNLS 61 Query: 74 LEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 LEF+ Y+ D PK+ V++C RD TYA P+K+ +RL + +IKE ++M Sbjct: 62 LEFLDYKLDDNPKYSVEECKDRDTTYAAPMKVKVRLT---------NRDTGEIKESEVFM 112 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 GD PLMT GTF+I G +R++VSQL RSPG++++ + GK L+ +IP++G W+ Sbjct: 113 GDFPLMTDKGTFIINGAERVIVSQLVRSPGVYYEQQFDKL---GKKLFFATVIPNRGAWL 169 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSA 251 + E DS DI VRIDR RKVP+T FL ALG ++ +IL F D Sbjct: 170 EYEEDSNDIFSVRIDRTRKVPITVFLRALGYGTDAQILDLFGEDERIKATLDKDTTKSEE 229 Query: 252 ADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD--------C 302 L+ + GE ++S K L L K + ++G Sbjct: 230 EGLL------EVYKRLRPGEPPTVDSAKSLLYSLFFDPKRYDLAYVGRYKFNKKLALSSR 283 Query: 303 LCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTL 362 L A +I N TGEI +E G I ++ ++I I + +L I N Sbjct: 284 LTNQKAATNIANPITGEIIVEEGQRISRETAKKIQDCGINVVEVLVEGRPIK--VIGNNT 341 Query: 363 VTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 +DI P DVS ++ E + L + T N Sbjct: 342 ------------VDINEYPLPFDVSDLNIKEKV--QLGVLKEILSNFTNEDEIKNEIKRR 387 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 +HI K+DIIA I ++L G G +DDID+LGNRR+RSVGE+L+NQ+R+GL RM Sbjct: 388 MDELIPKHITKDDIIASINYNLNLSFGIGFVDDIDHLGNRRLRSVGELLQNQFRIGLSRM 447 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER ++ER++ D+ + Q+LIN +PVV+A+ EFF SSQLSQ + N L+ +TH RRLS Sbjct: 448 ERVVRERMTIQDVSEITAQNLINIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLS 507 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG+E+RDVH THY R+CP ET EG NIGL+ SL ++AR+N YGFIE PY Sbjct: 508 ALGPGGLSRERAGMEVRDVHHTHYSRMCPIETPEGPNIGLIGSLATYARINEYGFIEAPY 567 Query: 603 RKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 RKV +V N++VY++A E+ IAQA+ LDE+ F E V R + + VPRE+ Sbjct: 568 RKVDKATGRVLNEIVYMTADVEDEYVIAQADEPLDEENRFVNERVTVRSKDDILSVPREE 627 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +DF+D SPKQVVS+A ++IPFLENDD+NR LMG NMQRQAVPLL +AP VGTG+E A Sbjct: 628 VDFMDVSPKQVVSVATAMIPFLENDDANRALMGSNMQRQAVPLLVPQAPIVGTGIEYKAA 687 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 + SG +AK +G+VE+V A +IVIR+ +G D Y L+KF+RSNQ TC+N RP Sbjct: 688 RDSGVVNIAKNSGVVERVTADKIVIRTDDGRRDE-------YELLKFKRSNQGTCINCRP 740 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V GD V + +I+DGPST+LG++ALGRN+LV FMPW GYN+ED++LISE +V +D T Sbjct: 741 IVNEGDRVEKGQVISDGPSTELGEIALGRNVLVGFMPWEGYNYEDAILISEELVKDDALT 800 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE+E ARDTKLGPEEITRDIPNV EE LK++DE GII +GAEV GDILVGK+TP Sbjct: 801 SIHIEEYESEARDTKLGPEEITRDIPNVGEEALKDLDERGIIRIGAEVTAGDILVGKVTP 860 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G G VVDV+++ R D Sbjct: 861 KGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEGGIVVDVKVYTRENGD 911 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 236/1059 (22%), Positives = 372/1059 (35%), Gaps = 133/1059 (12%) Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D + I+ TL D K ++ LL++Y+ +RPG+ T A+S+ LFFD +YDL+ Sbjct: 208 DLFGEDERIKATLDKDTTKSEEEGLLEVYKRLRPGEPPTVDSAKSLLYSLFFDPKRYDLA 267 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 VGR K N +L L + + + G+ +++ + + + + Sbjct: 268 YVGRYKFNKKLALS--------SRLTNQKAATNIANPITGEIIVEEGQRISRETAKKIQD 319 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 N + + + + + +P D ++ + V LS Sbjct: 320 CGINVVEVLVEGRPIKVIGNNTVDINEYPLPFD-VSDLNIKEKVQLGVLKEILSNFTNED 378 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 + I RR+ L + + + +G + N L S+ Sbjct: 379 EIKNEI--KRRMDELIPKHITKDDIIASINYNLNLSFGIGFVDDIDHLGNRRLR-SVGEL 435 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENR--YIA-----QANSSLDEDGSFTE 642 + + R V + DV ++A N +A +S L + T Sbjct: 436 LQNQFRIGLSRMERVVRERMTIQDVSEITAQNLINIRPVVAAIKEFFGSSQLSQFMDQTN 495 Query: 643 ELVFCRCAG------------EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRV 690 L E + + S + L + Sbjct: 496 PLAELTHKRRLSALGPGGLSRERAGMEVRDVHHTHYSRMCPIETPEGPNIGLIGSLATYA 555 Query: 691 LMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG 750 + ++A V V+ + + ++ Q D Sbjct: 556 RI------NEYGFIEAPYRKVDKATGRVLNEIVYMTADVEDEYVIAQADEPLDEENRFVN 609 Query: 751 DLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRN 810 + S DI + + + + Q V + A+ Sbjct: 610 ERVTVRSKDDILSVPREEVDFMDVSPKQVVSVATAMIPFLENDDANRALMGSNMQRQAVP 669 Query: 811 MLVAFMPWHGYNFE---------DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEI 861 +LV P G E ++ + +V I I T G + Sbjct: 670 LLVPQAPIVGTGIEYKAARDSGVVNIAKNSGVVERVTADKIVI--------RTDDGRRDE 721 Query: 862 TRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKA 921 + I+ I+ G V G ++ + + + +L + Sbjct: 722 YELLKFKRSNQGTCINCRPIVNEGDRVEKGQVISDGPSTEL-GEIALGRNVLVGFMPWEG 780 Query: 922 VDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER------EQIELLARDKDDEQ 975 + D L V + + + + + E E +D DE+ Sbjct: 781 YNYEDAILISEELVKDDALTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKDL-DER 839 Query: 976 VILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNV 1035 I+ +IL G+ G L + E R Sbjct: 840 GIIRIGAEVTAGDILVGKVTPKGETELTAEERLLRAIFGEKAR----------------- 882 Query: 1036 ESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHG 1095 E K+ + GD++PPGV +V+VF+A KR I GDKMAGRHG Sbjct: 883 EVRDTSLRVPHGEGGIVVDVKVYTRENGDELPPGVNEMVRVFIAQKRKISVGDKMAGRHG 942 Query: 1096 NKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSL 1155 NK GV SR+ ++ + Sbjct: 943 NK----------------------------GVVSRI------------------LPVEDM 956 Query: 1156 INDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGAD 1215 L+ + +++ V G ++TPVFDGA Sbjct: 957 PFLPDGTP--------LQICLNPLGVPSRMNIGQVLEVHLGLAAKALGWYMATPVFDGAH 1008 Query: 1216 EEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSY 1275 EE I +L A G+ LYDG TGEPFD PVTVGY+YMLKL+H+V DK++ARSTG Y Sbjct: 1009 EEDIQELLEKAGFSPDGKIQLYDGRTGEPFDHPVTVGYMYMLKLHHLVDDKMHARSTGPY 1068 Query: 1276 SLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAG 1335 SLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDD+ GR + YESIV G Sbjct: 1069 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDITGRVKTYESIVKG 1128 Query: 1336 NDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 + E G PESF VLVKE+Q+L L + + + A Sbjct: 1129 ENIPEPGVPESFKVLVKELQSLCLDVKVLTEDNQEVALK 1167 >gi|154705562|gb|ABS84207.1| DNA-directed RNA polymerase beta subunit [Lactobacillus reuteri] Length = 1202 Score = 856 bits (2211), Expect = 0.0, Method: Composition-based stats. Identities = 418/964 (43%), Positives = 587/964 (60%), Gaps = 80/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++++P+LIE+Q SY+ F+ +GL+ F Sbjct: 1 MAGHLVKYGKHRTRRSYSRIKEVLELPNLIEIQTDSYNWFM----------EKGLREMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ VD+ D Y+ PL +TLRL Sbjct: 51 DIMPIDDFQGKLSLEFVDYQLLEPKYTVDEAREHDANYSAPLHVTLRLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG+++ + + +G+ Y Sbjct: 102 ETGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYSEENDK---NGRPNY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFY-PKIVY 238 IP++G W++ E D+K++ +VRIDR RK+P+T + ALG S+ EI+ F Sbjct: 159 GATFIPNRGAWLEYETDAKNVSYVRIDRTRKLPMTELIRALGFGSDDEIIDMFGGDSETL 218 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK--- 294 S D +A D V + + GE +S + L + K + Sbjct: 219 SLTLDKD-VHKNAEDSRVEEALKDIYERLRPGEPKTADSARSLLTARFFDPKRYDMAPVG 277 Query: 295 -----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYV 349 + L G +AE + + +TGE+ + GD + ++ L ++ Sbjct: 278 RYKTNKKLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVTKELLNKLEPY---------- 327 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 R+ T +A++ + + + + D D+ Sbjct: 328 -------LHRDDFKTITPTPPDEAVVTEPVKL-----------QKILVYSKTDPDR---- 365 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 + + N P + +HI DI+A + +L+ G G+ DDID+LGNRR+RSVGE Sbjct: 366 -----VVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEGIGSTDDIDHLGNRRIRSVGE 420 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +L+NQ+R+GL RMER ++ER+S D D+V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 421 LLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQT 480 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+ Sbjct: 481 NPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSY 540 Query: 590 ARVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 ARVN YGFIETPYR+V D KVT+ + YL+A EE+N IAQAN+ L++DGSF ++ V Sbjct: 541 ARVNKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNFIIAQANTPLNDDGSFVDDQVMA 600 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R + I E ID++D SPKQVVS+A++ IPFLENDDSNR LMG NMQRQAVPL+ Sbjct: 601 RDKDDYIETSVENIDYMDVSPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLINPH 660 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 AP V TG++ A SG A++AK+ G VE VDA + +R +G LD Y+LMKF Sbjct: 661 APLVSTGIDYKAAHDSGVAMIAKKPGTVEYVDAREVRVREEDGTLD-------TYKLMKF 713 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN NQRP+VKVG+ V +D++ADGPS + G+LALG+N L+AFM W GYNFED++ Sbjct: 714 RRSNGGKNYNQRPIVKVGEHVDADDVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAI 773 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 I+ER+V +DV+TSIHIE +E AR+TKLGPEE+TR+IPNV ++ LK++DE GI+ VGAE Sbjct: 774 AINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVGDDALKDLDENGIVRVGAE 833 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V+ GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G + DV++F R Sbjct: 834 VHDGDILVGKVTPKGMTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTR 893 Query: 948 HGID 951 D Sbjct: 894 ENGD 897 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 223/1067 (20%), Positives = 369/1067 (34%), Gaps = 172/1067 (16%) Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 ++ ++ ++AL DIY +RPG+ T A S+ FFD +YD++ VGR K N Sbjct: 224 KDVHKNAEDSRVEEALKDIYERLRPGEPKTADSARSLLTARFFDPKRYDMAPVGRYKTNK 283 Query: 419 RLNLD-------------TPDDVRHI-------RKEDIIAIIKILVDLRNGKGTIDDIDN 458 +L L PD + KE + + L T D Sbjct: 284 KLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVTKELLNKLEPYLHRDDFKTITPTPPDE 343 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL----INAKPVVSAVC 514 + ++L + R+ I ++ + P D+ + + Sbjct: 344 AVVTEPVKLQKILVYS-KTDPDRVVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEGIG 402 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 L R A + V + + V P I P Sbjct: 403 STDDIDHLGNRRIRSVGELLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVA 462 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLS 618 S G + N G + R V D T+ Sbjct: 463 SIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCP 522 Query: 619 AMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR--EKIDFIDASPKQVVSIAA 676 E I NS + + +KID++ A + IA Sbjct: 523 IETPEGPNIGLINSLSSYARVNKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNFIIAQ 582 Query: 677 SLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 + P +D + M R + ++ T +E++ V Sbjct: 583 ANTPL---NDDGSFVDDQVMAR-------DKDDYIETSVENIDYMD-------VSPKQVV 625 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 V + I + QR PLV G Sbjct: 626 SVASACIPFLENDDSNRALMGA-------NMQRQAVPLINPHAPLVSTGI---------- 668 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 +++ + M+++ T +++ EV R+ + Sbjct: 669 -------------------------DYKAAHDSGVAMIAKKPGTVEYVDAREVRVRE-ED 702 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + + G KN ++ I+ VG V+ D+L + + + + L A Sbjct: 703 GTLDTYKLMKFRRSNGGKNYNQRPIVKVGEHVDADDVLADGPS-MEQGELALGQNPLIAF 761 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D V V + + E + E E + DD Sbjct: 762 MTWQGYNFEDAIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTRE-IPNVGDDALK 820 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 LD N R+ + + + G K T LS++ Sbjct: 821 DLDENGIVRVGAEVHDGDILVGKVTPKGMTELSAEE------------------------ 856 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 +I ++ + + G+++ VKVF GD+++ Sbjct: 857 ------RLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTREN-----GDELSP---- 901 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG-WACVGLGKKIKSL 1155 G+ + + R+ + Q + +G G K Sbjct: 902 -GVNTMV--------------------------RVYIAQKRKIQVGDKMSGRHGNKGTVS 934 Query: 1156 INDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGAD 1215 I + + P + ++ ++ +++ + + G+ ++TPVFDGA Sbjct: 935 IVVPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQLLELHLGMAARRLGIHMATPVFDGAS 994 Query: 1216 EEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSY 1275 ++ + +R + E G++ILYDG TGEPF+ + VG ++ LKL HMV DK++ARSTG Y Sbjct: 995 DKDVWDAVRESGFPEDGKTILYDGRTGEPFENRIAVGSMHYLKLAHMVDDKIHARSTGPY 1054 Query: 1276 SLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAG 1335 SLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD VGR R Y++I+ G Sbjct: 1055 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVRTYDAIING 1114 Query: 1336 NDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 + G PESF VLVKE+QALGL + + + K D ++ Sbjct: 1115 QPIPKPGVPESFRVLVKELQALGLDMKVLDGNNKEIQLKNMDEDDDE 1161 >gi|126654238|ref|ZP_01726032.1| DNA-directed RNA polymerase subunit beta [Bacillus sp. B14905] gi|126589296|gb|EAZ83453.1| DNA-directed RNA polymerase subunit beta [Bacillus sp. B14905] Length = 1191 Score = 855 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 433/964 (44%), Positives = 603/964 (62%), Gaps = 76/964 (7%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + +V G R R+ F + E++++P+LIE+Q ASY+ FL EGL+ F+ Sbjct: 4 LTGQLVQYGQHRQRRSFARIKEVLELPNLIEIQTASYEWFL----------EEGLREMFR 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+DVD+C RD+TYA PL++ +RL K Sbjct: 54 DISPIEDFTGNLSLEFIDYSLGDPKYDVDECKERDVTYAAPLRVKVRLY---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F + +GK + Sbjct: 105 ETDEVKEQDVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFH---DKTDKNGKKGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 162 GATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDIIGDNEYLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK---- 294 + + L+ + GE +ES K L K + Sbjct: 222 NTLEKDNSESTEKALL------EIYERLRPGEPPTVESAKSLLYSRFFDAKRYDLANVGR 275 Query: 295 ----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +V+ ETGEI +E G V+D ++L++I + Sbjct: 276 YKMNKKLHIKNRLFNQTIAETLVDPETGEILVEKGTVLDRRTLDKILPYLEDSSKGIGFR 335 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +++ + D + ++ P D + Sbjct: 336 TLSQVGGVLE----------DDVTIQSIKIYAPKDEAQK--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N ++V++I D+++ + +L G DDID+LGNRR+RSVGE+ Sbjct: 365 ----EINIISNAYIDEEVKNITPADVLSSVSYFFNLLYQVGATDDIDHLGNRRLRSVGEL 420 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 421 LQNQFRIGLSRMERVVRERMSINDTAAIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 480 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA Sbjct: 481 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFA 540 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR++ +VT + YL+A EE+N Y+AQANS L+ DGSF ++ V R Sbjct: 541 KVNKFGFIETPYRRIDHETGQVTEQIDYLTADEEDNYYVAQANSLLNPDGSFAKDEVVGR 600 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G+ + + ++D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL EA Sbjct: 601 FRGDNTVFNKAQMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLNPEA 660 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDI-YRLMKF 767 PFVGTGME V A+ SGAA+VAK GIVE V+A I +R +E G Y+L KF Sbjct: 661 PFVGTGMEHVDARDSGAAVVAKYDGIVEHVEARSIHVRRIEVVDGKEVKGDLTKYKLQKF 720 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ T NQRPLVKVG+ V+ DI+ADGPS + G+LALGRN+LVAFM W+G+N+ED++ Sbjct: 721 IRSNQGTSYNQRPLVKVGERVKPRDILADGPSMEKGELALGRNVLVAFMTWNGFNYEDAV 780 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TS+HIEE+E +RDTKLGPEEITRDIPNV E+ L+N+DE GII +GAE Sbjct: 781 IMSERLVKDDVYTSVHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAE 840 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G ++DV++FNR Sbjct: 841 VRDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIILDVKVFNR 900 Query: 948 HGID 951 D Sbjct: 901 EDGD 904 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 183/554 (33%), Positives = 260/554 (46%), Gaps = 77/554 (13%) Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V SIH+ EV+ G + + + ++ ++ VG V P D Sbjct: 686 IVEHVEARSIHVRRIEVVDGKEVKGDLTKYKLQKFIRSNQGTSYNQRPLVKVGERVKPRD 745 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDK 952 IL + + + +L A + D + V V + + Sbjct: 746 ILADGPS-MEKGELALGRNVLVAFMTWNGFNYEDAVIMSERLVKDDVYTSVHIEEYESES 804 Query: 953 NERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV 1007 + + E I + D DE+ I+ R +IL G+ G Sbjct: 805 RDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVRDGDILVGKVTPKGVTELTAEER 864 Query: 1008 LSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMP 1067 L + E R +++ + K+ + GD++P Sbjct: 865 LLHAIFGEKARE-VRDTSLRVPHGAGGI----------------ILDVKVFNREDGDELP 907 Query: 1068 PGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV 1127 PGV ++V+ ++ KR I+ GDKMAGRHGNKG++SRILP EDMPF+ DGTPVDI+LNPLGV Sbjct: 908 PGVNQLVRAYIVQKRKIRVGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGV 967 Query: 1128 PSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISD 1187 PSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 968 PSRMNIGQVLELHLGMASRYLGVHMATPVFDGANEEDVW--------------------- 1006 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 + A + G ++ILYDG +GEPFD Sbjct: 1007 ----ETMEEAGMNRDG-----------------------------KTILYDGRSGEPFDN 1033 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1034 RVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1093 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 AY LQE+LT+KSDDVVGR + YE+IV G E G PESF VL+KE+Q+LG+ + + Sbjct: 1094 AYTLQEILTVKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLGMDVKMLTVN 1153 Query: 1368 TKNSAKMEEIPDFN 1381 + + + + Sbjct: 1154 DEEVELRDLDEEED 1167 >gi|194466962|ref|ZP_03072949.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus reuteri 100-23] gi|227544410|ref|ZP_03974459.1| DNA-directed RNA polymerase [Lactobacillus reuteri CF48-3A] gi|300909336|ref|ZP_07126797.1| DNA-directed RNA polymerase subunit beta [Lactobacillus reuteri SD2112] gi|194453998|gb|EDX42895.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus reuteri 100-23] gi|227185606|gb|EEI65677.1| DNA-directed RNA polymerase [Lactobacillus reuteri CF48-3A] gi|300893201|gb|EFK86560.1| DNA-directed RNA polymerase subunit beta [Lactobacillus reuteri SD2112] Length = 1202 Score = 855 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 420/964 (43%), Positives = 588/964 (60%), Gaps = 80/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++++P+LIE+Q SY+ F+ +GL+ F Sbjct: 1 MAGHLVKYGKHRTRRSYSRIKEVLELPNLIEIQTDSYNWFM----------EKGLREMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ VD+ D Y+ PL +TLRL Sbjct: 51 DIMPIDDFQGKLSLEFVDYQLLEPKYTVDEAREHDANYSAPLHVTLRLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG+++ + + +G+ Y Sbjct: 102 ETGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYSEENDK---NGRPNY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFY-PKIVY 238 IP++G W++ E D+K++ +VRIDR RK+P+T + ALG S+ EI+ F Sbjct: 159 GATFIPNRGAWLEYETDAKNVSYVRIDRTRKLPMTELIRALGFGSDDEIIDMFGGDSETL 218 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK--- 294 S D +A D V + + GE +S + L + K + Sbjct: 219 SLTLDKD-VHKNAEDSRVEEALKDIYERLRPGEPKTADSARSLLTARFFDPKRYDMAPVG 277 Query: 295 -----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYV 349 + L G +AE + + +TGE+ + GD + ++ L ++ P L Sbjct: 278 RYKTNKKLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVTKELLNKLE-------PYLDR 330 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D Y +A++ + + + + D D+ Sbjct: 331 DDFKTITY----------TPSDEAVVTEPVKL-----------QKILVYSKTDPDR---- 365 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 + + N P + +HI DI+A + +L+ G G+ DDID+LGNRR+RSVGE Sbjct: 366 -----VVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEGIGSTDDIDHLGNRRIRSVGE 420 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +L+NQ+R+GL RMER ++ER+S D D+V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 421 LLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQT 480 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+ Sbjct: 481 NPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSY 540 Query: 590 ARVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 ARVN YGFIETPYR+V D KVT+ + YL+A EE+N IAQAN+ L++DGSF ++ V Sbjct: 541 ARVNKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNFIIAQANTPLNDDGSFVDDQVMA 600 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R + I E ID++D SPKQVVS+A++ IPFLENDDSNR LMG NMQRQAVPL+ Sbjct: 601 RDKDDYIETSVENIDYMDVSPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLINPH 660 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 AP V TG++ A SG A++AK+ G VE VDA + +R +G LD Y+LMKF Sbjct: 661 APLVSTGIDYKAAHDSGVAMIAKKPGTVEYVDAREVRVREEDGTLD-------TYKLMKF 713 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN NQRP+VKVG+ V +D++ADGPS + G+LALG+N L+AFM W GYNFED++ Sbjct: 714 RRSNGGKNYNQRPIVKVGEHVDADDVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAI 773 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 I+ER+V +DV+TSIHIE +E AR+TKLGPEE+TR+IPNV ++ LK++DE GI+ VGAE Sbjct: 774 AINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVGDDALKDLDENGIVRVGAE 833 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V+ GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G + DV++F R Sbjct: 834 VHDGDILVGKVTPKGMTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTR 893 Query: 948 HGID 951 D Sbjct: 894 ENGD 897 Score = 383 bits (984), Expect = e-103, Method: Composition-based stats. Identities = 223/1067 (20%), Positives = 369/1067 (34%), Gaps = 172/1067 (16%) Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 ++ ++ ++AL DIY +RPG+ T A S+ FFD +YD++ VGR K N Sbjct: 224 KDVHKNAEDSRVEEALKDIYERLRPGEPKTADSARSLLTARFFDPKRYDMAPVGRYKTNK 283 Query: 419 RLNLD-------------TPDDVRHI-------RKEDIIAIIKILVDLRNGKGTIDDIDN 458 +L L PD + KE + + L T D Sbjct: 284 KLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVTKELLNKLEPYLDRDDFKTITYTPSDE 343 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL----INAKPVVSAVC 514 + ++L + R+ I ++ + P D+ + + Sbjct: 344 AVVTEPVKLQKILVYS-KTDPDRVVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEGIG 402 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 L R A + V + + V P I P Sbjct: 403 STDDIDHLGNRRIRSVGELLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVA 462 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLS 618 S G + N G + R V D T+ Sbjct: 463 SIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCP 522 Query: 619 AMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR--EKIDFIDASPKQVVSIAA 676 E I NS + + +KID++ A + IA Sbjct: 523 IETPEGPNIGLINSLSSYARVNKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNFIIAQ 582 Query: 677 SLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 + P +D + M R + ++ T +E++ V Sbjct: 583 ANTPL---NDDGSFVDDQVMAR-------DKDDYIETSVENIDYMD-------VSPKQVV 625 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 V + I + QR PLV G Sbjct: 626 SVASACIPFLENDDSNRALMGA-------NMQRQAVPLINPHAPLVSTGI---------- 668 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 +++ + M+++ T +++ EV R+ + Sbjct: 669 -------------------------DYKAAHDSGVAMIAKKPGTVEYVDAREVRVRE-ED 702 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + + G KN ++ I+ VG V+ D+L + + + + L A Sbjct: 703 GTLDTYKLMKFRRSNGGKNYNQRPIVKVGEHVDADDVLADGPS-MEQGELALGQNPLIAF 761 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D V V + + E + E E + DD Sbjct: 762 MTWQGYNFEDAIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTRE-IPNVGDDALK 820 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 LD N R+ + + + G K T LS++ Sbjct: 821 DLDENGIVRVGAEVHDGDILVGKVTPKGMTELSAEE------------------------ 856 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 +I ++ + + G+++ VKVF GD+++ Sbjct: 857 ------RLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTREN-----GDELSP---- 901 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG-WACVGLGKKIKSL 1155 G+ + + R+ + Q + +G G K Sbjct: 902 -GVNTMV--------------------------RVYIAQKRKIQVGDKMSGRHGNKGTVS 934 Query: 1156 INDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGAD 1215 I + + P + ++ ++ +++ + + G+ ++TPVFDGA Sbjct: 935 IVVPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQLLELHLGMAARRLGIHMATPVFDGAS 994 Query: 1216 EEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSY 1275 ++ + +R + E G++ILYDG TGEPF+ + VG ++ LKL HMV DK++ARSTG Y Sbjct: 995 DKDVWDAVRESGFPEDGKTILYDGRTGEPFENRIAVGSMHYLKLAHMVDDKIHARSTGPY 1054 Query: 1276 SLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAG 1335 SLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD VGR R Y++I+ G Sbjct: 1055 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVRTYDAIING 1114 Query: 1336 NDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 + G PESF VLVKE+QALGL + + + K D ++ Sbjct: 1115 QPIPKPGVPESFRVLVKELQALGLDMKVLDGNNKEIQLKNMDEDDDE 1161 >gi|27467224|ref|NP_763861.1| DNA-directed RNA polymerase subunit beta [Staphylococcus epidermidis ATCC 12228] gi|57866134|ref|YP_187779.1| DNA-directed RNA polymerase subunit beta [Staphylococcus epidermidis RP62A] gi|242241874|ref|ZP_04796319.1| DNA-directed RNA polymerase subunit beta [Staphylococcus epidermidis W23144] gi|251809959|ref|ZP_04824432.1| DNA-directed RNA polymerase subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|282875007|ref|ZP_06283882.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus epidermidis SK135] gi|293367918|ref|ZP_06614556.1| DNA-directed RNA polymerase subunit beta [Staphylococcus epidermidis M23864:W2(grey)] gi|41018015|sp|Q8CQ84|RPOB_STAES RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|81675386|sp|Q5HRL0|RPOB_STAEQ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|27314767|gb|AAO03903.1|AE016745_2 RNA polymerase beta chain [Staphylococcus epidermidis ATCC 12228] gi|57636792|gb|AAW53580.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus epidermidis RP62A] gi|242234652|gb|EES36964.1| DNA-directed RNA polymerase subunit beta [Staphylococcus epidermidis W23144] gi|251806502|gb|EES59159.1| DNA-directed RNA polymerase subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|281296335|gb|EFA88854.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus epidermidis SK135] gi|291317947|gb|EFE58355.1| DNA-directed RNA polymerase subunit beta [Staphylococcus epidermidis M23864:W2(grey)] gi|319399709|gb|EFV87958.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus epidermidis FRI909] gi|329734685|gb|EGG70992.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus epidermidis VCU028] gi|329737853|gb|EGG74085.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus epidermidis VCU045] Length = 1183 Score = 855 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 442/964 (45%), Positives = 601/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SYD FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFL----------KEGLLEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG ++ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSTDQEIVDLLGDSEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI ++ G V+D + L+EI Sbjct: 273 YKANKKLHLKHRLFNQKLAEPIVNSETGEIVVDEGTVLDRRKLDEIMDVLET-------- 324 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N+ + V D+ + + + + D + + Sbjct: 325 NANSEVFELEGSVIDEPVEIQSIKVYV----------------------PNDEEGRTTTV 362 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G +V+ I DI+A + +L NG G DDID+LGNRR+RSVGE+ Sbjct: 363 IGNAL--------PDSEVKCITPADIVASMSYFFNLLNGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D DS+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTNSITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGTEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V +GD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVSIGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 483 bits (1242), Expect = e-133, Method: Composition-based stats. Identities = 162/440 (36%), Positives = 223/440 (50%), Gaps = 60/440 (13%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS---GPKGFKKSTVL 1008 K++ S+ E+ E ARD + R+I + L + K +L Sbjct: 782 KDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAEVKDGDIL 841 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR-FKNKIEKIQWGDD-M 1066 + + + + ++ K+ + GDD + Sbjct: 842 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTL 901 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLG Sbjct: 902 SPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLG 961 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 962 VPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------------------ 1003 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + A + G +++LYDG TGEPFD Sbjct: 1004 -------IEEAGMARDG-----------------------------KTVLYDGRTGEPFD 1027 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1028 NRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1087 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQE+LT KSDD VGR + YESIV G + PESF VL+KE+Q+LGL + + + Sbjct: 1088 AAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDE 1147 Query: 1367 RTKNSAKMEEIPDFNKCELK 1386 M ++ D + E K Sbjct: 1148 HDNEIE-MADVDDEDAAERK 1166 >gi|259502522|ref|ZP_05745424.1| DNA-directed RNA polymerase subunit beta [Lactobacillus antri DSM 16041] gi|259169474|gb|EEW53969.1| DNA-directed RNA polymerase subunit beta [Lactobacillus antri DSM 16041] Length = 1197 Score = 855 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 422/964 (43%), Positives = 590/964 (61%), Gaps = 80/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++++P+LIE+Q SY+ F+ ++GL+ F Sbjct: 4 LAGHLVKYGKHRTRRSYSRIKEVLELPNLIEIQTDSYNWFM----------DKGLREMFD 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ VD+ D Y+ PL +TLRL Sbjct: 54 DIMPIDDFQGKLSLEFVDYQLLEPKYTVDEAREHDANYSAPLHVTLRLT---------NH 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG++++ + + +G+ Y Sbjct: 105 ETGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYNEEADK---NGRPSY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFY-PKIVY 238 IP++G W++ E D+K+I +VRIDR RK+P+T + ALG S+ EI+ F Sbjct: 162 GATFIPNRGAWLEYETDAKNISYVRIDRTRKLPMTELVRALGFGSDDEIIDMFGGDSETL 221 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK--- 294 S D +A D V + + GE +S + L + K + Sbjct: 222 SLTLDKD-VHKNAEDSRVEEALKDIYERLRPGEPKTADSARNLLTARFFDPKRYDMAPVG 280 Query: 295 -----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYV 349 + L G +AE + + +TGE+ + GD + ++ L+++ P L Sbjct: 281 RYKTNKKLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVTKEVLKQLE-------PYLDR 333 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D Y +A++ + + + + D D+ Sbjct: 334 DDFKMVTY----------TPSDEAVVTEPVKL-----------QKILVYSKNDPDR---- 368 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 + + N P + +HI DI+A + +L+ G G DDID+LGNRR+RSVGE Sbjct: 369 -----VVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEGIGNTDDIDHLGNRRIRSVGE 423 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +L+NQ+R+GL RMER ++ER+S D D+V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 424 LLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQT 483 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+ Sbjct: 484 NPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSY 543 Query: 590 ARVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 ARVN YGFIETPYR+V D KVT+ + YL+A EE+N IAQANS L++DGSF ++ V Sbjct: 544 ARVNKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNFIIAQANSPLNDDGSFVDDEVMA 603 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R + I E +D++D SPKQVVS+A++ IPFLENDDSNR LMG NMQRQAVPL+ Sbjct: 604 RDKDDYIETSVENVDYMDVSPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLINPH 663 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 AP V TG++ A SG A++AK+ G VE VDA + +R +G LD Y+LMKF Sbjct: 664 APLVSTGIDYKAAHDSGVALIAKKPGTVEYVDAREVRVREEDGSLD-------TYKLMKF 716 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN NQRP+VKVG+ V +D++ADGPS + G+LALG+N L+AFM W GYNFED++ Sbjct: 717 RRSNGGKNYNQRPIVKVGEHVDADDVLADGPSMEEGELALGQNPLIAFMTWQGYNFEDAI 776 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 I+ER+V +DV+TSIHIE +E AR+TKLGPEE+TR+IPNV ++ LK++DE GI+ VGAE Sbjct: 777 AINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVGDDALKDLDEDGIVRVGAE 836 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V+ GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G V DV+IF R Sbjct: 837 VHDGDILVGKVTPKGMTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIVQDVKIFTR 896 Query: 948 HGID 951 D Sbjct: 897 ENGD 900 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 262/1066 (24%), Positives = 394/1066 (36%), Gaps = 170/1066 (15%) Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 ++ ++ ++AL DIY +RPG+ T A ++ FFD +YD++ VGR K N Sbjct: 227 KDVHKNAEDSRVEEALKDIYERLRPGEPKTADSARNLLTARFFDPKRYDMAPVGRYKTNK 286 Query: 419 RLNLD-------------TPDDVRHI-------RKEDIIAIIKILVDLRNGKGTIDDIDN 458 +L L PD + KE + + L T D Sbjct: 287 KLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVTKEVLKQLEPYLDRDDFKMVTYTPSDE 346 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL----INAKPVVSAVC 514 + ++L + R+ I ++ + P D+ + + Sbjct: 347 AVVTEPVKLQKILVYS-KNDPDRVVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEGIG 405 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 L R A + V + + V P I P Sbjct: 406 NTDDIDHLGNRRIRSVGELLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVA 465 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLS 618 S G + N G + R V D T+ Sbjct: 466 SIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCP 525 Query: 619 AMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR--EKIDFIDASPKQVVSIAA 676 E I NS + + +KID++ A + IA Sbjct: 526 IETPEGPNIGLINSLSSYARVNKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNFIIAQ 585 Query: 677 SLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 + P +D + M R + ++ T +E+V V Sbjct: 586 ANSPL---NDDGSFVDDEVMAR-------DKDDYIETSVENVDYMD-------VSPKQVV 628 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 V + I + QR PLV G Sbjct: 629 SVASACIPFLENDDSNRALMGA-------NMQRQAVPLINPHAPLVSTGI---------- 671 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 +++ + ++++ T +++ EV R+ + Sbjct: 672 -------------------------DYKAAHDSGVALIAKKPGTVEYVDAREVRVRE-ED 705 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + + G KN ++ I+ VG V+ D+L + E + + L A Sbjct: 706 GSLDTYKLMKFRRSNGGKNYNQRPIVKVGEHVDADDVLADGPS-MEEGELALGQNPLIAF 764 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D V V + + E + E E + DD Sbjct: 765 MTWQGYNFEDAIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTRE-IPNVGDDALK 823 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 LD + R+ G G K T +S R F + +V+ Sbjct: 824 DLDEDGIVRV-----GAEVHDGDILVGKVTPKGMTELSAEERLLHAIFGEKSREVRDTSL 878 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 + + KI + GD++ PGV +V+V++A KR IQ GDKM+GRHGN Sbjct: 879 RVPHGGGGIVQDV------KIFTRENGDELSPGVNTMVRVYIAQKRKIQVGDKMSGRHGN 932 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG VS ++P EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG + + + Sbjct: 933 KGTVSIVIPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQLLELHLGMAAKRLGIHMATPV 992 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 D + D V+D E Sbjct: 993 FDGATDKD---------------------------------------------VWDAVRE 1007 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 A E G++ILYDG TGEPF+ + VG ++ LKL HMV DK++ARSTG YS Sbjct: 1008 ---------AGFPEDGKTILYDGRTGEPFENRIAVGSMHYLKLAHMVDDKIHARSTGPYS 1058 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 LVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD VGR R Y++I+ G Sbjct: 1059 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVRTYDAIINGE 1118 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 + G PESF VLVKE+QALGL + + + K D + Sbjct: 1119 SIPKPGVPESFRVLVKELQALGLDMKVLDGNHKEVQLKNMDEDDAE 1164 >gi|73663522|ref|YP_302303.1| DNA-directed RNA polymerase subunit beta [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82581605|sp|Q49V52|RPOB_STAS1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|72496037|dbj|BAE19358.1| DNA-directed RNA polymerase beta subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1183 Score = 855 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 441/964 (45%), Positives = 603/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ + + E++++P+LIE+Q SYD FL EGL F+ Sbjct: 1 MAGQFVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFL----------EEGLLEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TY+ PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDTTYSAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ + Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKLDK---NGRTNF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG ++ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSTDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTETTDQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI E G V+D ++L+EI + Sbjct: 273 YKANKKLHLKHRLFNQKLAEPIVNTETGEIVAEEGTVLDRRNLDEIMD--------VLEA 324 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N+ + V D+ + + + + D + + Sbjct: 325 NANSEVFELEGTVIDEPVEIQSIKVYV----------------------PNDEEGRTTTV 362 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 363 IGN--------AFPDSEVKCITPADIIASMSYFFNLLSGIGFTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D DSV PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTDSVTPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS+LDE+G F + V CR Sbjct: 535 RVNEFGFIETPYRKVDLETNSITDQIDYLTADEEDSYVVAQANSTLDENGRFIADEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAIVAKR G VE V++ I++R +E D +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAIVAKRKGRVEHVESNEILVRQLIEEDGQEYEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V GD V + +I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNTGTCYNQRPIVASGDVVTKGEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVS+ LKN+D+ GI+ VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSDSALKNLDDRGIVYVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 VN GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VNDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 163/435 (37%), Positives = 231/435 (53%), Gaps = 63/435 (14%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD 1011 K++ S+ E+ E ARD + R+I + L + + + V D Sbjct: 782 KDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSDSALKNLDDRG--IVYVGAEVNDGD 839 Query: 1012 LISEYPRSQWWQFAVQDEKVQRNV--ESLKVQYETSKSILEDR----FKNKIEKIQWGDD 1065 ++ + +E++ + E + +TS + K+ + GDD Sbjct: 840 ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDD 899 Query: 1066 -MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNP 1124 + PGV ++V+V++ KR I GDKM GRHGNKG++S+++P EDMP+L DGTP+DI+LNP Sbjct: 900 TLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKLVPEEDMPYLPDGTPIDIMLNP 959 Query: 1125 LGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEK 1184 LGVPSRMN+GQ+ E HLG A LG + S + D ++ D+ Sbjct: 960 LGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGASDEDVWST---------------- 1003 Query: 1185 ISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 + A + G +++LYDG TGEP Sbjct: 1004 ---------IEEAGMARDG-----------------------------KTVLYDGRTGEP 1025 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 FD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++A Sbjct: 1026 FDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1085 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAAY LQE+LT KSDD VGR + YESIV G + + G PESF VL+KE+Q+LGL + + Sbjct: 1086 YGAAYTLQEILTYKSDDTVGRVKTYESIVKGENITKPGVPESFRVLMKELQSLGLDVKIM 1145 Query: 1365 NSRTKNSAKMEEIPD 1379 + + + Sbjct: 1146 DEHDNEIDMQDNEEE 1160 >gi|323339621|ref|ZP_08079894.1| DNA-directed RNA polymerase subunit beta [Lactobacillus ruminis ATCC 25644] gi|323092946|gb|EFZ35545.1| DNA-directed RNA polymerase subunit beta [Lactobacillus ruminis ATCC 25644] Length = 1194 Score = 855 bits (2209), Expect = 0.0, Method: Composition-based stats. Identities = 431/963 (44%), Positives = 597/963 (61%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G RVR+ + + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHLVKYGKHRVRRSYSRIKEVLELPNLIEIQTDSYKWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV+Y+ PK+ VD+ D Y+ PL +TLRLI K Sbjct: 54 EIMPIEDFAGKLSLEFVNYQLLEPKYTVDEAREHDANYSAPLHVTLRLI---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F+ + + +G+ Y Sbjct: 105 ETGEIKSQDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFNSEMDK---NGRETY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+K+I +VRIDR RK+P+T + ALG ++ EI+ Sbjct: 162 GTTVIPNRGAWLEYETDAKNISYVRIDRTRKIPLTELVRALGYGTDSEIIEILGQNDCLM 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D V + + GE +S + L + K + +G Sbjct: 222 NTLEKD-VHKNTEDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLAAVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L G +AE + + ETGEI +E+G+V+ + +E++ RD ++ Sbjct: 281 YKINKKLDLKTRLLGARLAETLADPETGEIIVESGEVVTKPIMEKLAPYLKRDDFKMFTF 340 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + ++ + L I +V + Sbjct: 341 HPSEEGVVQEPMT-----------LQIIKVYSETNP------------------------ 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N + P + +HI DI+A + +L+ G G+ DDID+LGNRR+RSVGE+ Sbjct: 366 --EEVINLIGNGNVPLEYKHITPSDILASMNYFFNLQEGLGSTDDIDHLGNRRIRSVGEL 423 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S DI +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 424 LQNQFRIGLTRMERVVRERMSIQDIATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 483 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+++A Sbjct: 484 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSTYA 543 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 VN YGF+ETPYR+V KVT+ + YL+A EE+N +AQANS L++DGSF + +V R Sbjct: 544 HVNKYGFVETPYRRVSWDTHKVTDKIDYLTADEEDNYVVAQANSPLNDDGSFVDPVVMAR 603 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E I + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+K A Sbjct: 604 SKDENIEISVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIKPHA 663 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTG+E A SG A++A+ AG +E VDA I +R +G LD Y+LMKF+ Sbjct: 664 PFVGTGIEYKAAHDSGDALIAEHAGTIEYVDAREIRVRREDGALDS-------YKLMKFR 716 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQ P+V VGD V ++++ADGPS + G+LALG+N L+AFM W GYNFED++ Sbjct: 717 RSNGGKNYNQTPIVHVGDHVDADEVLADGPSMEQGELALGQNPLIAFMTWDGYNFEDAIA 776 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 I+ER+V EDV+TSIHIEE E ARDTKLGPEE+TR+IPNV E+ LKN+DE GII VGAEV Sbjct: 777 INERLVKEDVYTSIHIEEHESEARDTKLGPEEMTREIPNVGEDALKNLDEFGIIRVGAEV 836 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 837 KDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKIFTRE 896 Query: 949 GID 951 D Sbjct: 897 AGD 899 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 241/1082 (22%), Positives = 399/1082 (36%), Gaps = 106/1082 (9%) Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D N I + E + ++ I IL + N ++ ++ Sbjct: 178 DAKNISYVRIDRTRKIPLTELVRALGYGTDSEIIEILGQNDCLMNTLEKDVHKNTEDSRV 237 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 +++L DIY +RPG+ T + S+ FFD +YDL+ VGR K+N +L+L T Sbjct: 238 EESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLAAVGRYKINKKLDLKTRLLGAR 297 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + + +A + + + + + + + Sbjct: 298 L--AETLADPETGEIIVESGEVVTKPIMEKLAPYLKRDDFKMFTFHPSEEGVVQEPMT-- 353 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 + + N + V++ + + + S LG Sbjct: 354 ----LQIIKVYSETNPEEVINLIGNGNVPLEYKHITPSDILASMNYFFNLQEGLGSTDDI 409 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKV 610 +R V + T + S+ A V I R V Sbjct: 410 DHLGNRRIRSVGELLQNQFRIGLTRMERVVRERMSIQDIATVTPQQLI--NIRPVVASIK 467 Query: 611 TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQ 670 + + + L + + + Sbjct: 468 ----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMC 523 Query: 671 VVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVA 729 + I + + + + + + V ++ + A +VA Sbjct: 524 PIETPEGPNIGLINSLSTYAHVNKYGFVETPYRRVSWDTHKVTDKIDYLTADEEDNYVVA 583 Query: 730 KRA----GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVG 785 + VD + + E + K + C+ Sbjct: 584 QANSPLNDDGSFVDPVVMARSKDENIEISVDKVDYMDVSPKQVVAVATACIP-------- 635 Query: 786 DEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIE 845 + +D ++ A+ A G ++ + + +++E T +++ Sbjct: 636 -FLENDDSNRALMGANMQRQAVPLIKPHAPFVGTGIEYKAAHDSGDALIAEHAGTIEYVD 694 Query: 846 EFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESP 905 E+ R + G + + + G KN ++ I+ VG V+ ++L + + Sbjct: 695 AREIRVRR-EDGALDSYKLMKFRRSNGGKNYNQTPIVHVGDHVDADEVLADGPS-MEQGE 752 Query: 906 MTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE--Q 963 + + L A + D V V H + + + E + Sbjct: 753 LALGQNPLIAFMTWDGYNFEDAIAINERLVKEDVYTSIHIEEHESEARDTKLGPEEMTRE 812 Query: 964 IELLARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 I + D DE I+ + +IL G+ G L + E R Sbjct: 813 IPNVGEDALKNLDEFGIIRVGAEVKDGDILVGKVTPKGVTELSAEERLLHAIFGEKAR-- 870 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 +V+ + + KI + GD++ PGV +V+V++A Sbjct: 871 ---------EVRDTSLRVPHGGGGIVQDV------KIFTREAGDELAPGVNMMVRVYIAQ 915 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR +Q GDKMAGRHGNKG VS ++P EDMPF+ DGTP+DI+L+P+GVPSRMN+GQ+ + H Sbjct: 916 KRKLQVGDKMAGRHGNKGTVSVVIPEEDMPFMPDGTPIDIMLSPMGVPSRMNIGQVLDLH 975 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LG A LG + S + D + DI Sbjct: 976 LGMAARKLGIHVTSPVFDGARDEDIWNALK------------------------------ 1005 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 ++G+P S+L G TGEPFD + VG +Y +KL Sbjct: 1006 EAGLP-----------SDGKSIL------YDG-------RTGEPFDNRIAVGVMYYMKLA 1041 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSD Sbjct: 1042 HMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSD 1101 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DVVGR + YE+IV G + G PESF VLVKE+QALGL + + +S+ + + + Sbjct: 1102 DVVGRVKTYEAIVKGEQIPQPGVPESFRVLVKELQALGLDMKVLDSKKQEIELRDMDEED 1161 Query: 1381 NK 1382 ++ Sbjct: 1162 DE 1163 >gi|312868906|ref|ZP_07729091.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus oris PB013-T2-3] gi|311095580|gb|EFQ53839.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus oris PB013-T2-3] Length = 1197 Score = 855 bits (2209), Expect = 0.0, Method: Composition-based stats. Identities = 422/964 (43%), Positives = 592/964 (61%), Gaps = 80/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++++P+LIE+Q SY+ F+ ++GL+ F Sbjct: 4 LAGHLVKYGKHRTRRSYSRIKEVLELPNLIEIQTDSYNWFM----------DKGLREMFD 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ VD+ D Y+ PL +TLRL Sbjct: 54 DIMPIDDFQGKLSLEFVDYQLLEPKYTVDEAREHDANYSAPLHVTLRLT---------NH 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG++++ + + +G+ Y Sbjct: 105 ETGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYNEEADK---NGRPSY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFY-PKIVY 238 IP++G W++ E D+K+I +VRIDR RK+P+T + ALG S+ EI+ F Sbjct: 162 GATFIPNRGAWLEYETDAKNISYVRIDRTRKLPMTELVRALGFGSDDEIIDMFGGDSETL 221 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK--- 294 S D +A D V + + GE +S + L + K + Sbjct: 222 SLTLDKD-VHKNAEDSRVEEALKDIYERLRPGEPKTADSARNLLTARFFDPKRYDMAPVG 280 Query: 295 -----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYV 349 + L G +AE + + +TGE+ + GD +D+++L+++ P L Sbjct: 281 RYKTNKKLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVDKETLKKLE-------PYLDR 333 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D Y +A++ + + + + D D+ Sbjct: 334 DDFKMVTY----------TPSDEAVVTEPVKL-----------QKILVYSKNDPDR---- 368 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 + + N P + +HI DI+A + +L+ G G DDID+LGNRR+RSVGE Sbjct: 369 -----VVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEGIGNTDDIDHLGNRRIRSVGE 423 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +L+NQ+R+GL RMER ++ER+S D D+V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 424 LLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQT 483 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+ Sbjct: 484 NPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSY 543 Query: 590 ARVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 ARVN YGFIETPYR+V + KVT+ + YL+A EE+N IAQANS L++DGSF ++ V Sbjct: 544 ARVNKYGFIETPYRRVSWKEHKVTDKIDYLTADEEDNFIIAQANSPLNDDGSFVDDEVMA 603 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R + I E +D++D SPKQVVS+A++ IPFLENDDSNR LMG NMQRQAVPL+ Sbjct: 604 RDKDDYIETSVENVDYMDVSPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLINPH 663 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 AP V TG++ A SG A++AK+ G VE VDA + +R +G LD Y+LMKF Sbjct: 664 APLVSTGIDYKAAHDSGVALIAKKPGTVEYVDAREVRVREDDGSLD-------TYKLMKF 716 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN NQRP+VKVG+ V +D++ADGPS + G+LALG+N L+AFM W GYNFED++ Sbjct: 717 RRSNGGKNYNQRPIVKVGEHVDADDVLADGPSMEEGELALGQNPLIAFMTWQGYNFEDAI 776 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 I+ER+V +DV+TSIHIE +E AR+TKLGPEE+TR+IPNV ++ LK++DE GI+ VGAE Sbjct: 777 AINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVGDDALKDLDEDGIVRVGAE 836 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V+ GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G V DV+IF R Sbjct: 837 VHDGDILVGKVTPKGMTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIVQDVKIFTR 896 Query: 948 HGID 951 D Sbjct: 897 ENGD 900 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 264/1066 (24%), Positives = 389/1066 (36%), Gaps = 170/1066 (15%) Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 ++ ++ ++AL DIY +RPG+ T A ++ FFD +YD++ VGR K N Sbjct: 227 KDVHKNAEDSRVEEALKDIYERLRPGEPKTADSARNLLTARFFDPKRYDMAPVGRYKTNK 286 Query: 419 RLNLD-------------TPDDVRHI-------RKEDIIAIIKILVDLRNGKGTIDDIDN 458 +L L PD + KE + + L T D Sbjct: 287 KLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVDKETLKKLEPYLDRDDFKMVTYTPSDE 346 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL----INAKPVVSAVC 514 + ++L + R+ I ++ + P D+ + + Sbjct: 347 AVVTEPVKLQKILVYS-KNDPDRVVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEGIG 405 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 L R A + V + + V P I P Sbjct: 406 NTDDIDHLGNRRIRSVGELLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVA 465 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLS 618 S G + N G + R V D T+ Sbjct: 466 SIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCP 525 Query: 619 AMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR--EKIDFIDASPKQVVSIAA 676 E I NS + + +KID++ A + IA Sbjct: 526 IETPEGPNIGLINSLSSYARVNKYGFIETPYRRVSWKEHKVTDKIDYLTADEEDNFIIAQ 585 Query: 677 SLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 + P +D + M R + ++ T +E+V V Sbjct: 586 ANSPL---NDDGSFVDDEVMAR-------DKDDYIETSVENVDYMD-------VSPKQVV 628 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 V + I + QR PLV G + + Sbjct: 629 SVASACIPFLENDDSNRALMGA-------NMQRQAVPLINPHAPLVSTGIDYK------- 674 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 A + + G + + E V ED Sbjct: 675 ---------AAHDSGVALIAKKPGT--VEYVDAREVRVRED------------------D 705 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + + G KN ++ I+ VG V+ D+L + E + + L A Sbjct: 706 GSLDTYKLMKFRRSNGGKNYNQRPIVKVGEHVDADDVLADGPS-MEEGELALGQNPLIAF 764 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D V V + + E + E E + DD Sbjct: 765 MTWQGYNFEDAIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTRE-IPNVGDDALK 823 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 LD + R+ G G K T +S R F + +V+ Sbjct: 824 DLDEDGIVRV-----GAEVHDGDILVGKVTPKGMTELSAEERLLHAIFGEKSREVRDTSL 878 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 + + KI + GD++ PGV +V+V++A KR IQ GDKM+GRHGN Sbjct: 879 RVPHGGGGIVQDV------KIFTRENGDELSPGVNTMVRVYIAQKRKIQVGDKMSGRHGN 932 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG VS ++P EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG + + + Sbjct: 933 KGTVSIVIPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQLLELHLGMAAKRLGIHMATPV 992 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 D + D V+D E Sbjct: 993 FDGATDKD---------------------------------------------VWDAVRE 1007 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 A E G++ILYDG TGEPF+ + VG ++ LKL HMV DK++ARSTG YS Sbjct: 1008 ---------AGFPEDGKTILYDGRTGEPFENRIAVGSMHYLKLAHMVDDKIHARSTGPYS 1058 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 LVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD VGR R Y++I+ G Sbjct: 1059 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVRTYDAIINGE 1118 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 + G PESF VLVKE+QALGL + + + K D + Sbjct: 1119 SIPKPGVPESFRVLVKELQALGLDMKVLDGNQKEVQLKNMDEDDAE 1164 >gi|242372760|ref|ZP_04818334.1| DNA-directed RNA polymerase subunit beta [Staphylococcus epidermidis M23864:W1] gi|242349533|gb|EES41134.1| DNA-directed RNA polymerase subunit beta [Staphylococcus epidermidis M23864:W1] Length = 1183 Score = 855 bits (2209), Expect = 0.0, Method: Composition-based stats. Identities = 443/964 (45%), Positives = 600/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SYD FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFL----------KEGLLEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGDPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG ++ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSTDQEIVDLLGESEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI E G V+D + ++EI Sbjct: 273 YKANKKLHLKHRLFNQKLAEPIVNSETGEIVAEEGTVLDRRKIDEIMDVLET-------- 324 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N+ + V D+ + + + + D + + Sbjct: 325 NANSEVFELEGSVIDEPVEIQSIKVYV----------------------PNDEEGRTTTV 362 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G +V+ I DIIA + +L NG G DDID+LGNRR+RSVGE+ Sbjct: 363 IGNAL--------PDSEVKCITPADIIASMSYFFNLLNGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D DS+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTNSITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ +++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEVLVRRLVEENGTEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVSVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 162/440 (36%), Positives = 224/440 (50%), Gaps = 60/440 (13%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS---GPKGFKKSTVL 1008 K++ S+ E+ E ARD + R+I + L + K +L Sbjct: 782 KDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAEVKDGDIL 841 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR-FKNKIEKIQWGDD-M 1066 + + + + ++ K+ + GDD + Sbjct: 842 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTL 901 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLG Sbjct: 902 SPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLG 961 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 962 VPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------------------ 1003 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + A + G +++LYDG TGEPFD Sbjct: 1004 -------IEEAGMARDG-----------------------------KTVLYDGRTGEPFD 1027 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1028 NRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1087 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQE+LT KSDD VGR + YESIV G + PESF VL+KE+Q+LGL + + + Sbjct: 1088 AAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDE 1147 Query: 1367 RTKNSAKMEEIPDFNKCELK 1386 + M ++ D + E K Sbjct: 1148 QDNEIE-MADVDDEDATERK 1166 >gi|223042737|ref|ZP_03612785.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus capitis SK14] gi|314932766|ref|ZP_07840135.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus caprae C87] gi|222443591|gb|EEE49688.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus capitis SK14] gi|313654447|gb|EFS18200.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus caprae C87] Length = 1183 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 445/964 (46%), Positives = 600/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SYD FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFL----------KEGLLEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIIDLLGESEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI E G V+D + ++EI Sbjct: 273 YKANKKLHLKHRLFNQKLAEPIVNSETGEIVAEEGTVLDRRKIDEIMEVLET-------- 324 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N+ + V D+ + + + + D + + Sbjct: 325 NANSEVFELEGSVIDEPVEIQSIKVYV----------------------PNDEEGRTTTV 362 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G +V+ I DIIA + +L NG G DDID+LGNRR+RSVGE+ Sbjct: 363 IGNAL--------PDSEVKCITPADIIASMSYFFNLLNGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D DS+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTNSITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNTEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESSEILVRRLVEENGTEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNTGTCYNQRPIVSVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 248/1163 (21%), Positives = 428/1163 (36%), Gaps = 115/1163 (9%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + +D + + Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIIDLLGESEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL++VGR K N Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKANK 277 Query: 419 RLNLDTPDDVRHI-RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +L+L + + +I+ + + + + E+ + + + Sbjct: 278 KLHLKHRLFNQKLAEPIVNSETGEIVAEEGTVLDRRKIDEIMEVLETNANSEVFELEGSV 337 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLIN--AKPVVSAVCEFFCSSQLSQLEEHVN---SL 532 +E + D + + N V + + +S +N Sbjct: 338 IDEPVEIQSIKVYVPNDEEGRTTTVIGNALPDSEVKCITPADIIASMSYFFNLLNGIGYT 397 Query: 533 SRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARV 592 I H G + + + + + + R+ +T L++ A + Sbjct: 398 DDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASI 457 Query: 593 NAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGE 652 + + + ++ + L E Sbjct: 458 KEFFGSSQLSQFMDQANPLAELTH---------------------KRRLSALGPGGLTRE 496 Query: 653 EILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + + + + I + + S + + + + Sbjct: 497 RAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTNSI 556 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 ++ + A + +VA+ + + + + K + Sbjct: 557 TDQIDYLTADEEDSYVVAQANSRL-----DENGRFLDDEVVCRFRGNNTVMAKEKMDYMD 611 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 + + +D ++ A+ A G + Sbjct: 612 VSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNTEAPFVGTGMEHVAARDSGA 671 Query: 832 RMVSEDVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNIDECGIICV 884 + ++ H+E E++ R G + ++ I+ V Sbjct: 672 AITAKHRGRVEHVESSEILVRRLVEENGTEHEGELDRYPLAKFKRSNTGTCYNQRPIVSV 731 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 G V +IL + M ++ + D + +S +V + Sbjct: 732 GDVVEYNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MSERLVKDDV 785 Query: 945 FNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKK 1004 + I++ E + E + RD + +N+ R + G G K Sbjct: 786 YTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYVGAEVKDGDILVGK 844 Query: 1005 STVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD 1064 T ++ R F + +V+ + K+ + GD Sbjct: 845 VTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVKVFNREEGD 898 Query: 1065 D-MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLN 1123 D + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LN Sbjct: 899 DTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLN 958 Query: 1124 PLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE 1183 PLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 959 PLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDEDVWST--------------- 1003 Query: 1184 KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243 + A + G +++LYDG TGE Sbjct: 1004 ----------IEEAGMARDG-----------------------------KTVLYDGRTGE 1024 Query: 1244 PFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQ 1303 PFD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++ Sbjct: 1025 PFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1084 Query: 1304 AYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 AYGAAY LQE+LT KSDD VGR + YESIV G + PESF VL+KE+Q+LGL + + Sbjct: 1085 AYGAAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGLDVKV 1144 Query: 1364 ENSRTKNSAKMEEIPDFNKCELK 1386 + + M ++ D + E K Sbjct: 1145 MDEQNNEIE-MADVDDEDATERK 1166 >gi|254932480|ref|ZP_05265839.1| RNA polymerase [Listeria monocytogenes HPB2262] gi|293584036|gb|EFF96068.1| RNA polymerase [Listeria monocytogenes HPB2262] Length = 1184 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 445/963 (46%), Positives = 602/963 (62%), Gaps = 80/963 (8%) Query: 2 AKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKS 61 + V G R R+ F + E++++P+LIE+Q ASY FL +EGL+ F+ Sbjct: 5 SGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFL----------DEGLREMFRD 54 Query: 62 VFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 + PI F+G LEF+ Y+ PK+ V++ RD YA PL++ LRLI K Sbjct: 55 ISPIEDFAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLI---------NKE 105 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 ++K+Q ++MGD PLMT+ GTF+I G +R++VSQL RSPG++F+ G+ + K + Sbjct: 106 TGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFN---GKLDKNVKKGFG 162 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQ 240 +IP++G W++ E D+KD++HVRIDR RK+PVT L ALG S+ EI+ Sbjct: 163 STVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRN 222 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK-------- 291 + + L+ + GE +++ + L K Sbjct: 223 TLEKDNTDNAEKALL------EIYERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRY 276 Query: 292 GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDS 351 + + L +AE +V+ ETGEI GD++D ++L++I + + Sbjct: 277 KINKKLHLKNRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQI------------IPN 324 Query: 352 VNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTV 411 + N R TD + L+ ++ P D Sbjct: 325 LENGVGFRTLRPTDGVME-DSVLVQSIKIYAPND-------------------------- 357 Query: 412 GRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEML 471 ++N+ N ++V+HI DII+ I +L +G G DDID+LGNRR+RSVGE+L Sbjct: 358 EEKEINIIGNAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELL 417 Query: 472 KNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 +NQ+R+GL RMER ++ER+S D+ ++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 418 QNQFRIGLSRMERVVRERMSIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP 477 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+ Sbjct: 478 LGELTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAK 537 Query: 592 VNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 VN +GFIETPYR+V +VT+ + YL+A EE+N +AQANS LDE G+FTEE V R Sbjct: 538 VNKFGFIETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARF 597 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 E + V +E+ID++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPL+ EAP Sbjct: 598 RSENLAVEKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAP 657 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVDIYRLMKFQ 768 FVGTGME V AK SGAA+ AK GIVE V+A I +R V D T G+D Y L KF Sbjct: 658 FVGTGMEHVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFV 717 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSNQ TC NQRP V GD V + +I+ +GPS D G+LALGRN+LVAFM W GYN+ED+++ Sbjct: 718 RSNQGTCYNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAII 777 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHIEEFE ARDTKLGPEE+TRDIPNV E+ L+++DE GII VGAEV Sbjct: 778 MSERLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEV 837 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 D+LVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV+IF R Sbjct: 838 KDNDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTRE 897 Query: 949 GID 951 D Sbjct: 898 AGD 900 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 246/1044 (23%), Positives = 392/1044 (37%), Gaps = 106/1044 (10%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D + +N Y+RNTL D + + ALL+IY +RPG+ T A S+ FFD +YDL Sbjct: 211 IDLIGDNDYLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVDNARSLLVSRFFDPKRYDL 270 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 ++VGR K+N +L+L + + + LVD G+ D L R + + Sbjct: 271 ASVGRYKINKKLHLK--------NRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQII 322 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 L+N +G + + SV + S+ + + ++ + + + + Sbjct: 323 PNLEN--GVGFRTLRPTDGVMEDSVLVQSIKIYAPNDEEKEINIIGNAYIEENVKHITPS 380 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 S L +G +R V + + + S+ Sbjct: 381 DIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQD 440 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 + I R V + + + L Sbjct: 441 MTTITPQQLI--NIRPVVASIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGG 494 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 E + + + I + + S + + E Sbjct: 495 LTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPE 554 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 V ++ + A +VA+ + + E + S + Sbjct: 555 TNRVTDKIDYLTADEEDNYVVAQANSKL-----DEQGTFTEEEVMARFRSENLAVEKERI 609 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 + + + +D ++ A+ A G + Sbjct: 610 DYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEHVSAK 669 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKL-------GPEEITRDIPNVSEEGLKNIDECG 880 + ++ H+E E+ R L G + V ++ Sbjct: 670 DSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCYNQRP 729 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 + G V G+IL + + +L A + D + V Sbjct: 730 NVAEGDRVVKGEILGNGPS-MDSGELALGRNVLVAFMTWDGYNYEDAIIM----SERLVK 784 Query: 941 DVRIFNRHGIDKNERSISVE---REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 D + H + + + E + +D LD R+ + + + Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844 Query: 998 GPKGFKKSTVLSSD--LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K T L+++ L+ + + +V + Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIV-------------LDV 891 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMPF+ DG Sbjct: 892 KIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDG 951 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 952 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMA 1011 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 T ++DG Sbjct: 1012 RDAK----------------------------TILYDG---------------------- 1021 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 +GE FD ++VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1022 ----RSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1077 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LTIKSDDVVGR + YE+IV G E G PESF VL+KE+Q Sbjct: 1078 EMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQ 1137 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPD 1379 +LG+ + + ++ + + D Sbjct: 1138 SLGMDVKMLSADEEEIEMRDMDDD 1161 >gi|304385423|ref|ZP_07367768.1| DNA-directed RNA polymerase subunit beta [Pediococcus acidilactici DSM 20284] gi|304328630|gb|EFL95851.1| DNA-directed RNA polymerase subunit beta [Pediococcus acidilactici DSM 20284] Length = 1202 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 592/963 (61%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F Sbjct: 4 LAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTDSYQWFL----------DEGLREMFN 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y+ PK+ VD+ + Y+ PL +TLRL Sbjct: 54 DIMPIEDFAGKLSLEFVDYQLLEPKYTVDEAREHEANYSAPLHVTLRLT---------NH 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++++ D + + + ++ Sbjct: 105 ETGEIKSQDVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNLDVDK---NNRNIW 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W++ E D+K++ +VRIDR RK+P+T + ALG S+E I+ F Sbjct: 162 GATVIPNRGAWLEYETDAKEVSYVRIDRTRKIPMTELVRALGFGSDEEIIDIFGGSDSLD 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 D + D V + + GE +S + L + K + +G Sbjct: 222 FTLDKD-VHKNPEDSRVAESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDMAPVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L G +AE + + +TGE+ + GDV+D+ ++++ P L Sbjct: 281 YKVNKKLSLKTRLLGQTLAETLADPDTGEVLAQKGDVVDKDVMKKLA-------PYLDRQ 333 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 Y + D+ + + + ++ P D + +L Sbjct: 334 DFKMVTYQPS----DEAVVPEPMTIQVIKIQDPNDP------------------ERELKM 371 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G ++++L +HI DIIA I L+ G G+ DDID+LGNRR+RSVGE+ Sbjct: 372 IGNGNIDLKL--------KHITPADIIASINYFFLLQQGIGSTDDIDHLGNRRIRSVGEL 423 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D ++V PQ LIN +PVV+A EFF SSQLSQ + N Sbjct: 424 LQNQFRIGLARMERVVRERMSIQDAETVTPQQLINIRPVVAATKEFFGSSQLSQFMDQTN 483 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L S+ Sbjct: 484 PLGELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLASYG 543 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 ++N YGFIETPYR+V D KVT+ + YL+A EE+ IAQANS L++DGSF +++V R Sbjct: 544 KINRYGFIETPYRRVSWKDHKVTDRIDYLTADEEDQFVIAQANSPLNDDGSFVDDVVMAR 603 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 + I E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPLL A Sbjct: 604 HESDNIETSIENVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLDPHA 663 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P +GTG+E A SG A++ + G+VE VDA I +R +G LD Y+LMKF+ Sbjct: 664 PLIGTGIEYKAAHDSGVALLCQHPGVVEYVDAREIRVRRDDGALD-------TYKLMKFR 716 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V+V D+V +D++ADGPS +LG+LALG+N L+AFM W GYNFED++ Sbjct: 717 RSNGGKNYNQRPIVRVNDKVDADDVLADGPSMELGELALGQNPLIAFMTWQGYNFEDAIA 776 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 I+ER+V +DV+TSIHIEE+E ARDTKLGPEE+TR+IPNV E+ L+N+D+ GI+ +GAEV Sbjct: 777 INERLVRDDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALRNLDQDGIVRIGAEV 836 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 837 QDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKIFTRE 896 Query: 949 GID 951 D Sbjct: 897 NGD 899 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 168/525 (32%), Positives = 242/525 (46%), Gaps = 73/525 (13%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 G + + + G KN ++ I+ V +V+ D+L + + + Sbjct: 701 RRDDGALDTYKLMKFRRSNGGKNYNQRPIVRVNDKVDADDVLADGPS-MELGELALGQNP 759 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE---REQIELLAR 969 L A + + D V D + H + + + E + Sbjct: 760 LIAFMTWQGYNFEDAIAIN----ERLVRDDVYTSIHIEEYESEARDTKLGPEEMTREIPN 815 Query: 970 DKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDE 1029 +D LD++ R+ G G K T +S R F + Sbjct: 816 VGEDALRNLDQDGIVRI-----GAEVQDGDILVGKVTPKGVTELSAEERLLHAIFGEKAR 870 Query: 1030 KVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDK 1089 +V+ + + KI + GD++ PGV +V+V++A KR +Q GDK Sbjct: 871 EVRDTSLRVPHGGGGIVQDV------KIFTRENGDELSPGVNMMVRVYIAQKRKLQVGDK 924 Query: 1090 MAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLG 1149 MAGRHGNKG VS ++P EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG Sbjct: 925 MAGRHGNKGTVSVVIPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQVLELHLGMAARNLG 984 Query: 1150 KKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTP 1209 + + + D + DI + Sbjct: 985 IHMTTPVFDGARDEDIWEAVAEAGM----------------------------------- 1009 Query: 1210 VFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYA 1269 + S+L G++ GEPF++ V VG ++ +KL HMV DK++A Sbjct: 1010 ------DSDAKSVL------YDGRT-------GEPFEQRVAVGVMHYMKLAHMVDDKIHA 1050 Query: 1270 RSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVY 1329 RS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD+VGR + Y Sbjct: 1051 RSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDIVGRVKTY 1110 Query: 1330 ESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 E+IV G G PESF VLVKE+QALGL + + + Sbjct: 1111 EAIVKGESIPRPGVPESFRVLVKELQALGLDMKVLGEDKQEVELR 1155 >gi|310644212|ref|YP_003948971.1| DNA-directed RNA polymerase subunit beta [Paenibacillus polymyxa SC2] gi|309249163|gb|ADO58730.1| DNA-directed RNA polymerase subunit beta [Paenibacillus polymyxa SC2] Length = 1181 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 436/967 (45%), Positives = 596/967 (61%), Gaps = 83/967 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++++P+LIE+Q+ SYD FL EGL+ F+ Sbjct: 1 MAGHLVQYGR-RTRRSYARINEVLEVPNLIEIQQKSYDWFL----------EEGLREMFR 49 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G +LEF+ Y PK+ VDD RD+TYA PL++ +RLI K Sbjct: 50 DISPIQDFTGNLILEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLI---------NK 100 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F + + K Y Sbjct: 101 ETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFS---TKVDKNAKTTY 157 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KDII+VRIDR RK+PVT L ALG ++ EIL Sbjct: 158 TATVIPNRGAWLELEMDAKDIIYVRIDRTRKIPVTVLLRALGFGTDAEILDLLGNDEYIR 217 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + L+ + GE +++ K L K Sbjct: 218 NTLDKDNTDSTEKALI------EIYERLRPGEPPTLDNAKSLLVARFFDPKRYDLANVGR 271 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +++ TGEI EAG ++D + L+EI + Sbjct: 272 YKINKKLHIKNRLFNQRLAETLIDTTTGEIIAEAGQMVDRRLLDEILAQLEESVG----- 326 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 R V + D L V P + Sbjct: 327 -------HRTYHVASGVLESNDIPLQTIDVFSPIE----------------------DGK 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 V ++ N + V++I DII+ I ++L +G G+ DDID+LGNRR+RSVGE+ Sbjct: 358 VVKLIAN----GNIDKSVKNITPADIISSISYFINLLHGIGSTDDIDHLGNRRLRSVGEL 413 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 414 LQNQFRIGLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 473 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVHP+HYGR+CP ET EG NIGL++SL++FA Sbjct: 474 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHPSHYGRMCPIETPEGPNIGLINSLSTFA 533 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIE PYR V GKVT+ + YL+A EE+N +AQAN+ L E+ +F +E+V R Sbjct: 534 RINEYGFIEAPYRWVDPKTGKVTDQIDYLTADEEDNYIVAQANAELTEENTFKDEIVIVR 593 Query: 649 CAGEEILVPR---EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 + + ++D++D SPKQVVS+A +LIPFLENDDSNR LMG NMQRQAVPLL Sbjct: 594 YNKQSDNIIPMASSRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLI 653 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPS-TSGVDIYRL 764 +AP VGTGME AK SG +V+K G++E+ A I +R +E + Y+L Sbjct: 654 PKAPLVGTGMEHKSAKDSGVCVVSKYNGVIERSSANEIWLRRIETVDGTEVKGDIVKYKL 713 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 KF RSNQ TC+NQRP+V GD V+ DI+ADGPST++G+LALGRN++VAFM W GYN+E Sbjct: 714 HKFMRSNQGTCINQRPIVNRGDIVKVGDILADGPSTEMGELALGRNVVVAFMTWEGYNYE 773 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 D++L+SE++V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV EE L+N+DE GII + Sbjct: 774 DAILLSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRI 833 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 GAE+ GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G VVDV++ Sbjct: 834 GAEIAAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKV 893 Query: 945 FNRHGID 951 F R D Sbjct: 894 FTRENGD 900 Score = 509 bits (1311), Expect = e-141, Method: Composition-based stats. Identities = 185/527 (35%), Positives = 264/527 (50%), Gaps = 67/527 (12%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + I++ I+ G V GDIL + + + ++ A Sbjct: 706 GDIVKYKLHKFMRSNQGTCINQRPIVNRGDIVKVGDILADGPSTE-MGELALGRNVVVAF 764 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D L +S +V ++ I++ E + E + RD + Sbjct: 765 MTWEGYNYEDAIL-----LSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE 819 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 RN+ R I G +G K T ++ R F + +V+ Sbjct: 820 EALRNLDER-GIIRIGAEIAAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSL 878 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 + + + K+ + GD++PPGV ++V+V++A KR I GDKMAGRHGN Sbjct: 879 RVPHGTDGIVVDV------KVFTRENGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGN 932 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG+V+RILP EDMPFL DGTPV +VLNPLGVPSRMN+GQ+ E HLG A + LG + + + Sbjct: 933 KGVVARILPEEDMPFLPDGTPVQVVLNPLGVPSRMNIGQVLEVHLGMAAMRLGIHVATPV 992 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 D D VFD Sbjct: 993 FDGAKEYD---------------------------------------------VFD---- 1003 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 + A + +G+++LYDG TG+ F+R VTVG ++M+KL HMV DK++ARSTG YS Sbjct: 1004 -----TMEEAGMQRNGKTVLYDGRTGDRFEREVTVGVMHMIKLAHMVDDKIHARSTGPYS 1058 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 LVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YESIV G Sbjct: 1059 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGE 1118 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKC 1383 + E G PESF VL+KE+Q+LG+ + + + + E + + Sbjct: 1119 NVPEPGVPESFKVLIKELQSLGMDVKILSEDEQEIEMRELDDEDDTT 1165 >gi|317123104|ref|YP_004103107.1| DNA-directed RNA polymerase subunit beta [Thermaerobacter marianensis DSM 12885] gi|315593084|gb|ADU52380.1| DNA-directed RNA polymerase subunit beta [Thermaerobacter marianensis DSM 12885] Length = 1244 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 448/950 (47%), Positives = 586/950 (61%), Gaps = 92/950 (9%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 VV +G R R FG+ E++D+P+LIEVQ SY FL NEGL+ F+ + Sbjct: 10 HVVKSG-KRERLSFGRIHEVLDLPNLIEVQLNSYRWFL----------NEGLKETFQDIS 58 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI F+G +LEFV Y PK+ V +C RD+TYA P+++ +RLI K Sbjct: 59 PIQDFTGNLVLEFVDYSLGEPKYSVQECKDRDVTYAAPMRVRVRLI---------NKETG 109 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 ++KEQ ++MGD PLMT+ GTFVI G +R+VVSQL RSPG+++ D +G LY+ Sbjct: 110 EVKEQEVFMGDFPLMTEHGTFVINGAERVVVSQLVRSPGVYYSVDYD---ANGNPLYSAT 166 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRG 242 +IP++G W++ E D+ +++VR+DR RK P T L ALG ++ E+L Sbjct: 167 VIPNRGAWLEFESDATGVVYVRVDRTRKQPATVLLRALGYQTDAELLELLGDNEHVRATL 226 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD 301 D A L+ K + GE ES ++L L K + +G Sbjct: 227 DKDNTDSQAEALIEIYK------RLRPGEPPTDESARQLLDNLFFDPKRYDLAAVGRYK- 279 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 + + + A DV+D ++ E I + R L Sbjct: 280 ------LNKKLNLRARLIGLYAAEDVVDPETGERIVEAGQRFDRQLAQRVQAAGV----- 328 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 + + +D + V+ G Sbjct: 329 -RRVRVRTPEDREV---VVLGNGQP----------------------------------- 349 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 VR + +ED+ AI+ L G GT DDID+LGNRR+RSVGE+L+NQ+R+GL R Sbjct: 350 ---DTSVRTLTREDVAAIVNYAFGLFAGVGTTDDIDHLGNRRLRSVGELLQNQFRIGLAR 406 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 MER IKER+S D D++ PQ LIN +PVV+AV EFF SSQLSQ + N LS +TH RRL Sbjct: 407 MERVIKERMSIQDADAITPQALINIRPVVAAVKEFFGSSQLSQFMDQTNPLSELTHKRRL 466 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG ++RDVH +HYGR+CP ET EG NIGL+ ++ ++ARVN YGFIETP Sbjct: 467 SALGPGGLSRERAGFDVRDVHHSHYGRMCPIETPEGPNIGLIGAMATYARVNEYGFIETP 526 Query: 602 YRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 YR+V +G+VT+DVVYL+A EE+ IAQAN+ LDE+G F + V R + L E+I Sbjct: 527 YRRVENGRVTDDVVYLTADEEDECVIAQANAELDENGYFKNKRVAVRFRDQVRLAAPEEI 586 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D++D SPKQV SIA +LIPFLE+DD+NR LMG NMQRQAVPL++ EAP VGTG+E A Sbjct: 587 DYMDVSPKQVFSIATALIPFLEHDDANRALMGANMQRQAVPLIRTEAPLVGTGVEYRTAV 646 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG + A+RAG V +V A IVI + +G D Y LMKF+RSNQ TC NQRPL Sbjct: 647 DSGVVLTARRAGTVRRVTAREIVIETDDGQRD-------TYTLMKFERSNQGTCFNQRPL 699 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V+ G V + ++IADGPSTD G+LALGRN+LVAFMPW GYN+ED++LISER+V EDVFTS Sbjct: 700 VRKGQRVEKGEVIADGPSTDHGELALGRNVLVAFMPWEGYNYEDAILISERLVKEDVFTS 759 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE+E ARDTKLGPEEITRDIPNV E+ L+++DE GII +GAEV GDILVGK+TPK Sbjct: 760 IHIEEYECEARDTKLGPEEITRDIPNVGEDQLRDLDERGIIRIGAEVRAGDILVGKVTPK 819 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 GE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG VVDV++F+R D Sbjct: 820 GETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKVFSRENGD 869 Score = 539 bits (1388), Expect = e-150, Method: Composition-based stats. Identities = 199/532 (37%), Positives = 274/532 (51%), Gaps = 79/532 (14%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 +T G + + ++ ++ G V G+++ + + + Sbjct: 671 ETDDGQRDTYTLMKFERSNQGTCFNQRPLVRKGQRVEKGEVIADGPST-DHGELALGRNV 729 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDK- 971 L A + + D L +S +V +F I++ E + E + RD Sbjct: 730 LVAFMPWEGYNYEDAIL-----ISERLVKEDVFTSIHIEEYECEARDTKLGPEEITRDIP 784 Query: 972 ---DDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD--LISEYPRSQWWQFAV 1026 +D+ LD R+ + + + G K T L+++ L+ + + Sbjct: 785 NVGEDQLRDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRD 844 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 +V + V K+ + GD++ PGV ++V+V+VA KR I Sbjct: 845 TSLRVPHGESGIVV-------------DVKVFSRENGDELAPGVNQLVQVYVAQKRKISE 891 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG+++RI+P EDMPFL DGTPVDIVLNPLGVPSRMN+GQI E Sbjct: 892 GDKMAGRHGNKGVIARIMPEEDMPFLPDGTPVDIVLNPLGVPSRMNIGQILE-------C 944 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG K+L G+ V Sbjct: 945 HLGWAAKAL-----------------------------------------------GLWV 957 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDG DEE+I +LR A L ESG+++LYDG TGEPFD VTVGY+YMLKL H+V DK Sbjct: 958 ATPVFDGTDEESIRELLRQAGLPESGKTVLYDGRTGEPFDNEVTVGYVYMLKLAHLVDDK 1017 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR Sbjct: 1018 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRV 1077 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP 1378 + YE+IV G + E G PESF VL+KEMQ+LGL + + + +E Sbjct: 1078 KTYEAIVKGENVPEPGVPESFKVLIKEMQSLGLDVKILTEDNREIELRDEED 1129 >gi|224475691|ref|YP_002633297.1| DNA-directed RNA polymerase subunit beta [Staphylococcus carnosus subsp. carnosus TM300] gi|254765304|sp|B9DKV0|RPOB_STACT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|222420298|emb|CAL27112.1| RNA polymerase beta chain [Staphylococcus carnosus subsp. carnosus TM300] Length = 1183 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 439/964 (45%), Positives = 594/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ + + E++++P+LIE+Q SYD FL EGL F+ Sbjct: 1 MAGKFVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFL----------KEGLLEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKDQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W++ E D+KDI++VRIDR RK+P+T L ALG +++ I+ Sbjct: 159 DATVIPNRGAWLEFETDAKDIVYVRIDRTRKLPLTVLLRALGYSTDQSIIDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDSTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN +TGEI E G V+D + L+EI + I Sbjct: 273 YKMNKKLHLKHRLFNQKLAEPIVNSDTGEIVAEEGTVLDRRKLDEIMDVLESNANI---- 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 D + + + +V P D Sbjct: 329 ---------EVDELDDSIVNEPVEIQSIKVYVPND------------------------E 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DI+A + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIVASMSYFFNLLHGIGQTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D DS+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV VT+ + YL+A EE++ +AQANS LD++G F E V CR Sbjct: 535 RVNEFGFIETPYRKVDLETNTVTDQIDYLTADEEDSYVVAQANSRLDDEGHFISEEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ R+K+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ E+ Sbjct: 595 FRGNNTMMDRDKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPES 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV-EGDLDPSTSGVDIYRLMKF 767 PFVGTGME A+ SGAA++ K G VE V++ I +R + E D +D YRL KF Sbjct: 655 PFVGTGMEHATARDSGAAVINKHFGRVEHVESNEIKVRRIIEEDGQQYDGELDTYRLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+VK GD V + +I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVKDGDIVSQGEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNV+E LKN+DE GI+ VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVAESALKNLDERGIVYVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 253/1155 (21%), Positives = 426/1155 (36%), Gaps = 112/1155 (9%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LINKETGEVKDQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + +I D + L + + +D + +N Y+ Sbjct: 158 YDATVIPNRGAWLEFETDAKDIVYVRIDRTRKLPLTVLLRALGYSTDQSIIDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD R + Sbjct: 218 RNTLEKDSTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPK--------RYDLAS 269 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 + + + + +V+ G+ ++ L R++ + ++L++ + Sbjct: 270 VGRYKMNKKLHLKHRLFNQKLAEPIVNSDTGEIVAEEGTVLDRRKLDEIMDVLESNANIE 329 Query: 479 LLRMERSIKER-ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 + ++ SI + I +P D + + F S++ + S Sbjct: 330 VDELDDSIVNEPVEIQSIKVYVPNDEEGRT--TTVIGNAFPDSEVKCITPADIVASMSYF 387 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 L +GQ +R V + + + S+ + Sbjct: 388 FNLLHGIGQTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTDSITPQQL 447 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 I R V + + + + L E + Sbjct: 448 I--NIRPVIASIK----EFFGSSQLSQFMDQANPLAELTHKRRLSALGPGGLTRERAQME 501 Query: 658 REKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + + + I + + S + + E V ++ Sbjct: 502 VRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLETNTVTDQID 561 Query: 717 SVVA--KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR--SNQ 772 + A + S A E V+ G+ Y + ++ S Sbjct: 562 YLTADEEDSYVVAQANSRLDDEGHFISEEVVCRFRGNNTMMDRDKMDYMDVSPKQVVSAA 621 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 C+ + +D ++ A+ + G + Sbjct: 622 TACIP---------FLENDDSNRALMGANMQRQAVPLMNPESPFVGTGMEHATARDSGAA 672 Query: 833 MVSEDVFTSIHIEEFEVMARDTKL-------GPEEITRDIPNVSEEGLKNIDECGIICVG 885 ++++ H+E E+ R G + R ++ I+ G Sbjct: 673 VINKHFGRVEHVESNEIKVRRIIEEDGQQYDGELDTYRLAKFKRSNSGTCYNQRPIVKDG 732 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 V+ G+IL + M ++ + D + +S +V ++ Sbjct: 733 DIVSQGEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MSERLVKDDVY 786 Query: 946 NRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKS 1005 I++ E + E + RD + +N+ R + G G K Sbjct: 787 TSIHIEEYESEARDTKLGPEEITRDIPNVAESALKNLDER-GIVYVGAEVKDGDILVGKV 845 Query: 1006 TVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD 1065 T ++ R F + +V+ + K+ + GDD Sbjct: 846 TPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVKVFNREDGDD 899 Query: 1066 -MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNP 1124 + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DGTP+DI+LNP Sbjct: 900 SLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGTPIDIMLNP 959 Query: 1125 LGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEK 1184 LGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 960 LGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST---------------- 1003 Query: 1185 ISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 + A + G +++LYDG TGEP Sbjct: 1004 ---------IEEAGMARDG-----------------------------KTVLYDGRTGEP 1025 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 FD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++A Sbjct: 1026 FDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1085 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAAY LQE+LT KSDD VGR + YE+IV G + + PESF VL+KE+Q+LGL + + Sbjct: 1086 YGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISKPSVPESFRVLMKELQSLGLDVKVM 1145 Query: 1365 NSRTKNSAKMEEIPD 1379 + K + D Sbjct: 1146 DEDDKEIEMADVDED 1160 >gi|257897292|ref|ZP_05676945.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium Com12] gi|293378969|ref|ZP_06625124.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium PC4.1] gi|257833857|gb|EEV60278.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium Com12] gi|292642510|gb|EFF60665.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium PC4.1] Length = 1205 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 1 MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 51 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 102 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 159 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 219 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 278 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + +V P D Sbjct: 326 FIDNGLNSVTYYPSEDGVVTDPMTVQVIKVFSPKDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 362 --EREVNVIGNGYPEAAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 480 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 540 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 660 PWVGTGMEYKSAHDSGAALLCKHDGVVEYVDASEIRVRRDNGALDK-------YDVTKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 713 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 833 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 892 Query: 949 GID 951 D Sbjct: 893 AGD 895 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 176/504 (34%), Positives = 236/504 (46%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + Sbjct: 725 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 775 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 776 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 827 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 828 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 886 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 887 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 941 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 942 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 991 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 992 ------------------SDEDVWETVREAGMASDAKTVLYDG----------------- 1016 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1017 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1067 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1068 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1127 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + Sbjct: 1128 VKELQSLGLDMRVLDIEETEIELR 1151 >gi|298693873|gb|ADI97095.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus ED133] gi|323439812|gb|EGA97529.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus O11] gi|323443086|gb|EGB00706.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus O46] Length = 1183 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 443/964 (45%), Positives = 598/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------E 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 242/1158 (20%), Positives = 417/1158 (36%), Gaps = 130/1158 (11%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSD--------KYDLST 410 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +Y + Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +K + V E ++ +L + + N + G + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 471 LKNQYRLGLLRME----RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLE 526 + + +++ + + I +++++ FF Sbjct: 338 IDEPVEIQSIKVYVPNDEEGRTTTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYT 397 Query: 527 EHVNSLSRITHTRRLSALGQG--GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + ++ L RRL ++G+ R R V R+ +T L++ Sbjct: 398 DDIDHLG----NRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTESITPQQLIN 449 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 A + + + + ++ + L Sbjct: 450 IRPVIASIKEFFGSSQLSQFMDQANPLAELTH---------------------KRRLSAL 488 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPL 703 E + + + + I + + S + Sbjct: 489 GPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRK 548 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 + + + ++ + A + +VA+ + + + + Sbjct: 549 VDLDTHAITDQIDYLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMA 603 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 K + + + +D ++ A+ A G Sbjct: 604 KEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEH 663 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNI 876 + + ++ H+E E++ R G + Sbjct: 664 VAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCY 723 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 ++ I+ VG V +IL + M ++ + D + +S Sbjct: 724 NQRPIVAVGDVVEYNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MS 777 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 +V ++ I++ E + E + RD + +N+ R + G Sbjct: 778 ERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVK 836 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 G K T ++ R F + +V+ + K Sbjct: 837 DGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVK 890 Query: 1057 IEKIQWGDD-MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 + + GDD + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG Sbjct: 891 VFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDG 950 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 P+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 951 RPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------- 1003 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + A + G +++ Sbjct: 1004 ------------------IEEAGMARDG-----------------------------KTV 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1017 LYDGRTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1076 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q Sbjct: 1077 EMEVWALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQ 1136 Query: 1356 ALGLSIDLENSRTKNSAK 1373 +LGL + + + + Sbjct: 1137 SLGLDVKVMDEQDNEIEM 1154 >gi|269202165|ref|YP_003281434.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus ED98] gi|296275788|ref|ZP_06858295.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus MR1] gi|262074455|gb|ACY10428.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus ED98] Length = 1183 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 443/964 (45%), Positives = 598/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 242/1158 (20%), Positives = 417/1158 (36%), Gaps = 130/1158 (11%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSD--------KYDLST 410 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +Y + Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +K + V E ++ +L + + N + G + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 471 LKNQYRLGLLRME----RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLE 526 + + +++ + + I +++++ FF Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRTTTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYT 397 Query: 527 EHVNSLSRITHTRRLSALGQG--GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + ++ L RRL ++G+ R R V R+ +T L++ Sbjct: 398 DDIDHLG----NRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTESITPQQLIN 449 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 A + + + + ++ + L Sbjct: 450 IRPVIASIKEFFGSSQLSQFMDQANPLAELTH---------------------KRRLSAL 488 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPL 703 E + + + + I + + S + Sbjct: 489 GPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRK 548 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 + + + ++ + A + +VA+ + + + + Sbjct: 549 VDLDTHAITDQIDYLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMA 603 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 K + + + +D ++ A+ A G Sbjct: 604 KEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEH 663 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNI 876 + + ++ H+E E++ R G + Sbjct: 664 VAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCY 723 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 ++ I+ VG V +IL + M ++ + D + +S Sbjct: 724 NQRPIVAVGDVVEYNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MS 777 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 +V ++ I++ E + E + RD + +N+ R + G Sbjct: 778 ERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVK 836 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 G K T ++ R F + +V+ + K Sbjct: 837 DGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVK 890 Query: 1057 IEKIQWGDD-MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 + + GDD + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG Sbjct: 891 VFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDG 950 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 P+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 951 RPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------- 1003 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + A + G +++ Sbjct: 1004 ------------------IEEAGMARDG-----------------------------KTV 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1017 LYDGRTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1076 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q Sbjct: 1077 EMEVWALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQ 1136 Query: 1356 ALGLSIDLENSRTKNSAK 1373 +LGL + + + + Sbjct: 1137 SLGLDVKVMDEQDNEIEM 1154 >gi|49482772|ref|YP_039996.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus MRSA252] gi|257424656|ref|ZP_05601083.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257427324|ref|ZP_05603723.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257429960|ref|ZP_05606344.1| DNA-directed RNA polymerase subunit beta protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432662|ref|ZP_05609022.1| DNA-directed RNA polymerase subunit beta protein [Staphylococcus aureus subsp. aureus E1410] gi|257435566|ref|ZP_05611614.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus M876] gi|282903130|ref|ZP_06311021.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus C160] gi|282904920|ref|ZP_06312778.1| DNA-directed RNA polymerase subunit beta protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282907870|ref|ZP_06315705.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282913375|ref|ZP_06321164.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus M899] gi|282918330|ref|ZP_06326067.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus C427] gi|282923292|ref|ZP_06330972.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus C101] gi|283957340|ref|ZP_06374793.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|293500421|ref|ZP_06666272.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293509366|ref|ZP_06668077.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus M809] gi|293523953|ref|ZP_06670640.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus M1015] gi|295427080|ref|ZP_06819716.1| DNA-directed RNA polymerase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590567|ref|ZP_06949206.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus MN8] gi|56749585|sp|Q6GJC6|RPOB_STAAR RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|49240901|emb|CAG39568.1| DNA-directed RNA polymerase beta chain protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272226|gb|EEV04349.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257275517|gb|EEV06990.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257279157|gb|EEV09758.1| DNA-directed RNA polymerase subunit beta protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282077|gb|EEV12212.1| DNA-directed RNA polymerase subunit beta protein [Staphylococcus aureus subsp. aureus E1410] gi|257284757|gb|EEV14876.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus M876] gi|282314160|gb|EFB44550.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus C101] gi|282317464|gb|EFB47836.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus C427] gi|282322407|gb|EFB52729.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus M899] gi|282328254|gb|EFB58532.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331745|gb|EFB61256.1| DNA-directed RNA polymerase subunit beta protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282596085|gb|EFC01046.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus C160] gi|283790791|gb|EFC29606.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|290920916|gb|EFD97977.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus M1015] gi|291095426|gb|EFE25687.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291467463|gb|EFF09978.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus M809] gi|295128868|gb|EFG58498.1| DNA-directed RNA polymerase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576866|gb|EFH95581.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus MN8] gi|315193906|gb|EFU24300.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus CGS00] Length = 1183 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 443/964 (45%), Positives = 598/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEFNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 242/1158 (20%), Positives = 417/1158 (36%), Gaps = 130/1158 (11%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSD--------KYDLST 410 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +Y + Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +K + V E ++ +L + + N + G + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 471 LKNQYRLGLLRME----RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLE 526 + + +++ + + I +++++ FF Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRTTTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYT 397 Query: 527 EHVNSLSRITHTRRLSALGQG--GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + ++ L RRL ++G+ R R V R+ +T L++ Sbjct: 398 DDIDHLG----NRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTESITPQQLIN 449 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 A + + + + ++ + L Sbjct: 450 IRPVIASIKEFFGSSQLSQFMDQANPLAELTH---------------------KRRLSAL 488 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPL 703 E + + + + I + + S + Sbjct: 489 GPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRK 548 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 + + + ++ + A + +VA+ + + + + Sbjct: 549 VDLDTHAITDQIDYLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMA 603 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 K + + + +D ++ A+ A G Sbjct: 604 KEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEH 663 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNI 876 + + ++ H+E E++ R G + Sbjct: 664 VAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCY 723 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 ++ I+ VG V +IL + M ++ + D + +S Sbjct: 724 NQRPIVAVGDVVEFNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MS 777 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 +V ++ I++ E + E + RD + +N+ R + G Sbjct: 778 ERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVK 836 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 G K T ++ R F + +V+ + K Sbjct: 837 DGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVK 890 Query: 1057 IEKIQWGDD-MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 + + GDD + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG Sbjct: 891 VFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDG 950 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 P+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 951 RPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------- 1003 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + A + G +++ Sbjct: 1004 ------------------IEEAGMARDG-----------------------------KTV 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1017 LYDGRTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1076 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q Sbjct: 1077 EMEVWALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQ 1136 Query: 1356 ALGLSIDLENSRTKNSAK 1373 +LGL + + + + Sbjct: 1137 SLGLDVKVMDEQDNEIEM 1154 >gi|15926220|ref|NP_373753.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus N315] gi|21282226|ref|NP_645314.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus MW2] gi|49485407|ref|YP_042628.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus MSSA476] gi|82750250|ref|YP_415991.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus RF122] gi|150393049|ref|YP_001315724.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus JH1] gi|151220716|ref|YP_001331538.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus str. Newman] gi|156978871|ref|YP_001441130.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus Mu3] gi|161353532|ref|YP_499096.2| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161508782|ref|YP_001574441.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|162138570|ref|YP_493230.2| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|221141021|ref|ZP_03565514.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315652|ref|ZP_04838865.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731147|ref|ZP_04865312.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732550|ref|ZP_04866715.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus TCH130] gi|257795359|ref|ZP_05644338.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A9781] gi|258408954|ref|ZP_05681235.1| RNA polymerase subunit beta [Staphylococcus aureus A9763] gi|258420408|ref|ZP_05683351.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A9719] gi|258439329|ref|ZP_05690261.1| DNA-directed RNA polymerase subunit beta protein [Staphylococcus aureus A9299] gi|258444069|ref|ZP_05692406.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus A8115] gi|258452725|ref|ZP_05700723.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A5948] gi|258453786|ref|ZP_05701760.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus A5937] gi|262049585|ref|ZP_06022454.1| DNA-directed RNA polymerase beta subunit [Staphylococcus aureus D30] gi|282894977|ref|ZP_06303200.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A8117] gi|282915865|ref|ZP_06323630.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus D139] gi|282928879|ref|ZP_06336470.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A10102] gi|283769698|ref|ZP_06342590.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus H19] gi|284023552|ref|ZP_06377950.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus 132] gi|295406919|ref|ZP_06816722.1| DNA-directed RNA polymerase [Staphylococcus aureus A8819] gi|297208744|ref|ZP_06925172.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246257|ref|ZP_06930106.1| DNA-directed RNA polymerase [Staphylococcus aureus A8796] gi|300912834|ref|ZP_07130276.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus TCH70] gi|304381859|ref|ZP_07364506.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|41017889|sp|P60278|RPOB_STAAN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|41017890|sp|P60279|RPOB_STAAW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|56749538|sp|Q6GBU5|RPOB_STAAS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|109914398|sp|Q2FJ98|RPOB_STAA3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|109914399|sp|Q2YSB9|RPOB_STAAB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|110282991|sp|P47768|RPOB_STAA8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|166229308|sp|A7WYW7|RPOB_STAA1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|172048778|sp|A6QEJ4|RPOB_STAAE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|189043870|sp|A6TZ19|RPOB_STAA2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|189043872|sp|A8YZP0|RPOB_STAAT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|13700433|dbj|BAB41731.1| RNA polymerase beta chain [Staphylococcus aureus subsp. aureus N315] gi|21203662|dbj|BAB94362.1| RNA polymerase beta chain [Staphylococcus aureus subsp. aureus MW2] gi|49243850|emb|CAG42275.1| DNA-directed RNA polymerase beta chain protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82655781|emb|CAI80181.1| DNA-dependent RNA polymerase beta subunit [Staphylococcus aureus RF122] gi|149945501|gb|ABR51437.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus JH1] gi|150373516|dbj|BAF66776.1| DNA-directed RNA polymerase beta chain [Staphylococcus aureus subsp. aureus str. Newman] gi|156721006|dbj|BAF77423.1| RNA polymerase beta chain [Staphylococcus aureus subsp. aureus Mu3] gi|160367591|gb|ABX28562.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725112|gb|EES93841.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729479|gb|EES98208.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus TCH130] gi|257789331|gb|EEV27671.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A9781] gi|257840305|gb|EEV64768.1| RNA polymerase subunit beta [Staphylococcus aureus A9763] gi|257843598|gb|EEV68004.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A9719] gi|257847666|gb|EEV71665.1| DNA-directed RNA polymerase subunit beta protein [Staphylococcus aureus A9299] gi|257850739|gb|EEV74684.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus A8115] gi|257859598|gb|EEV82448.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A5948] gi|257864042|gb|EEV86796.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus A5937] gi|259162325|gb|EEW46898.1| DNA-directed RNA polymerase beta subunit [Staphylococcus aureus D30] gi|269940115|emb|CBI48491.1| DNA-directed RNA polymerase beta chain protein [Staphylococcus aureus subsp. aureus TW20] gi|282320161|gb|EFB50506.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus D139] gi|282589487|gb|EFB94576.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A10102] gi|282762659|gb|EFC02796.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A8117] gi|283459845|gb|EFC06935.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus H19] gi|283469834|emb|CAQ49045.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus ST398] gi|285816243|gb|ADC36730.1| DNA-directed RNA polymerase beta subunit [Staphylococcus aureus 04-02981] gi|294968150|gb|EFG44176.1| DNA-directed RNA polymerase [Staphylococcus aureus A8819] gi|296886689|gb|EFH25594.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176855|gb|EFH36113.1| DNA-directed RNA polymerase [Staphylococcus aureus A8796] gi|300885938|gb|EFK81141.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus TCH70] gi|302332255|gb|ADL22448.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus JKD6159] gi|302750433|gb|ADL64610.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339645|gb|EFM05592.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829038|emb|CBX33880.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128835|gb|EFT84834.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus CGS03] gi|315196646|gb|EFU26993.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus CGS01] gi|320141593|gb|EFW33432.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320141778|gb|EFW33606.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|329731052|gb|EGG67425.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus 21189] gi|329731972|gb|EGG68328.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus 21193] Length = 1183 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 443/964 (45%), Positives = 598/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 242/1158 (20%), Positives = 417/1158 (36%), Gaps = 130/1158 (11%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSD--------KYDLST 410 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +Y + Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +K + V E ++ +L + + N + G + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 471 LKNQYRLGLLRME----RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLE 526 + + +++ + + I +++++ FF Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRTTTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYT 397 Query: 527 EHVNSLSRITHTRRLSALGQG--GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + ++ L RRL ++G+ R R V R+ +T L++ Sbjct: 398 DDIDHLG----NRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTESITPQQLIN 449 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 A + + + + ++ + L Sbjct: 450 IRPVIASIKEFFGSSQLSQFMDQANPLAELTH---------------------KRRLSAL 488 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPL 703 E + + + + I + + S + Sbjct: 489 GPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRK 548 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 + + + ++ + A + +VA+ + + + + Sbjct: 549 VDLDTHAITDQIDYLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMA 603 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 K + + + +D ++ A+ A G Sbjct: 604 KEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEH 663 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNI 876 + + ++ H+E E++ R G + Sbjct: 664 VAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCY 723 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 ++ I+ VG V +IL + M ++ + D + +S Sbjct: 724 NQRPIVAVGDVVEYNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MS 777 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 +V ++ I++ E + E + RD + +N+ R + G Sbjct: 778 ERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVK 836 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 G K T ++ R F + +V+ + K Sbjct: 837 DGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVK 890 Query: 1057 IEKIQWGDD-MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 + + GDD + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG Sbjct: 891 VFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDG 950 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 P+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 951 RPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------- 1003 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + A + G +++ Sbjct: 1004 ------------------IEEAGMARDG-----------------------------KTV 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1017 LYDGRTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1076 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q Sbjct: 1077 EMEVWALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQ 1136 Query: 1356 ALGLSIDLENSRTKNSAK 1373 +LGL + + + + Sbjct: 1137 SLGLDVKVMDEQDNEIEM 1154 >gi|319891506|ref|YP_004148381.1| DNA-directed RNA polymerase beta subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161202|gb|ADV04745.1| DNA-directed RNA polymerase beta subunit [Staphylococcus pseudintermedius HKU10-03] gi|323465322|gb|ADX77475.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus pseudintermedius ED99] Length = 1184 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 437/964 (45%), Positives = 598/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ + + E++++P+LIE+Q SYD FL EGL F+ Sbjct: 1 MAGQFVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFL----------KEGLLEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++MGD PLMT+ GTFVI G +R++VSQL RSP ++F+ + +G++ Y Sbjct: 102 ETGEVKDQEVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYFNEKLDK---NGRVNY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+P+T L ALG ++ EI+ Sbjct: 159 DATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGYSTDQEIIELIGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDSTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI E G V+D + L+EI Sbjct: 273 YKANKKLHLKHRLFNQKLAEPIVNTETGEIVAEEGTVLDRRKLDEIMDVLET-------- 324 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +A +Y + P + V + D+ +T Sbjct: 325 ---------------------NANAQVYEL--PNSIIDEPVEIQSIKVYVPNDDEERTTT 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 V N +V+ I DI+A + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 362 V-------IGNAFPDSEVKCITPADIVASMSYFFNLLHGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D DS+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ + CR Sbjct: 535 RVNEFGFIETPYRKVDIETNTITDQIDYLTADEEDSYVVAQANSRLDENGRFIDDEIVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G + +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPLL E+ Sbjct: 595 FRGNNTTMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLNPES 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAA+++K G VE V + I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAVISKYRGRVEHVQSSEILVRRLVEENGQEVDGTLDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP++ GD V + +I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIIAKGDIVEKGEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSENALKNLDDRGIVYVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 157/428 (36%), Positives = 217/428 (50%), Gaps = 59/428 (13%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS---GPKGFKKSTVL 1008 K++ S+ E+ E ARD + R+I + L + K +L Sbjct: 782 KDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSENALKNLDDRGIVYVGAEVKDGDIL 841 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR-FKNKIEKIQWGDD-M 1066 + + + + ++ K+ + GDD + Sbjct: 842 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDSL 901 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLG Sbjct: 902 SPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLG 961 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 962 VPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------------------ 1003 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + A + G +++LYDG TGEPFD Sbjct: 1004 -------IEEAGMARDG-----------------------------KTVLYDGRTGEPFD 1027 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1028 NRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1087 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q+LGL + + + Sbjct: 1088 AAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDE 1147 Query: 1367 RTKNSAKM 1374 + Sbjct: 1148 QDNEIEMR 1155 >gi|282910183|ref|ZP_06317987.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282325575|gb|EFB55883.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|312439038|gb|ADQ78109.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus TCH60] Length = 1183 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 442/964 (45%), Positives = 597/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V GD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAAGDVVEFNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 157/427 (36%), Positives = 217/427 (50%), Gaps = 59/427 (13%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGP---KGFKKSTVL 1008 K++ S+ E+ E ARD + R+I + L + K +L Sbjct: 782 KDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAEVKDGDIL 841 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR-FKNKIEKIQWGDD-M 1066 + + + + ++ K+ + GDD + Sbjct: 842 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTL 901 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLG Sbjct: 902 SPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLG 961 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 962 VPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------------------ 1003 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + A + G +++LYDG TGEPFD Sbjct: 1004 -------IEEAGMARDG-----------------------------KTVLYDGRTGEPFD 1027 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1028 NRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1087 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q+LGL + + + Sbjct: 1088 AAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDE 1147 Query: 1367 RTKNSAK 1373 + Sbjct: 1148 QDNEIEM 1154 >gi|258422611|ref|ZP_05685517.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A9635] gi|257847183|gb|EEV71191.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A9635] Length = 1183 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 443/964 (45%), Positives = 599/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI + Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMN------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 247/1145 (21%), Positives = 417/1145 (36%), Gaps = 104/1145 (9%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL++VGR K N Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 419 RLNLDTPDDVRHI-RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +L+L + + +I+V+ + + + E+ + + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMNVLESNANSEVFELHGSV 337 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 +E + D + + + F S++ + S Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRT----------TTVIGNAFPDSEVKCITPADIIASMSYF 387 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 LS +G +R V + + + S+ + Sbjct: 388 FNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTESITPQQL 447 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 I R V + + + + L E + Sbjct: 448 I--NIRPVIASIK----EFFGSSQLSQFMDQANPLAELTHKRRLSALGPGGLTRERAQME 501 Query: 658 REKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + + + I + + S + + + + ++ Sbjct: 502 VRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTHAITDQID 561 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 + A + +VA+ + + + + K + + Sbjct: 562 YLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMAKEKMDYMDVSPKQ 616 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 + +D ++ A+ A G + + ++ Sbjct: 617 VVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAAITAK 676 Query: 837 DVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 H+E E++ R G + ++ I+ VG V Sbjct: 677 HRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCYNQRPIVAVGDVVE 736 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 +IL + M ++ + D + +S +V ++ Sbjct: 737 YNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MSERLVKDDVYTSIH 790 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 I++ E + E + RD + +N+ R + G G K T Sbjct: 791 IEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVKDGDILVGKVTPKG 849 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD-MPP 1068 ++ R F + +V+ + K+ + GDD + P Sbjct: 850 VTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVKVFNREEGDDTLSP 903 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLGVP Sbjct: 904 GVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVP 963 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDY 1188 SRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 964 SRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST-------------------- 1003 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 + A + G +++LYDG TGEPFD Sbjct: 1004 -----IEEAGMARDG-----------------------------KTVLYDGRTGEPFDNR 1029 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA Sbjct: 1030 ISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1089 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 Y LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q+LGL + + + + Sbjct: 1090 YTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDEQD 1149 Query: 1369 KNSAK 1373 Sbjct: 1150 NEIEM 1154 >gi|167461257|ref|ZP_02326346.1| DNA-directed RNA polymerase subunit beta [Paenibacillus larvae subsp. larvae BRL-230010] Length = 1180 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 436/959 (45%), Positives = 601/959 (62%), Gaps = 80/959 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E+++IP+LIE+Q+ SY FL +EGL+ F+ Sbjct: 3 LAGHLVQYGR-RKRRTYARINEVLEIPNLIEIQQKSYQWFL----------DEGLREMFQ 51 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G +LEF+ Y PK+ VDD RD+TYA PL++ +RLI K Sbjct: 52 DISPIQDFTGNLVLEFIDYSLGEPKYTVDDSKERDVTYAAPLRVKVRLI---------NK 102 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD P+MT+ GTF+I G +R++VSQL RSP ++++ + +GK + Sbjct: 103 ETGEVKEQEVFMGDFPIMTETGTFIINGAERVIVSQLVRSPSVYYN---TKVDKNGKKAF 159 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KDII+VRIDR RK+PVT L ALG ++ EIL Sbjct: 160 TATVIPNRGAWLELETDAKDIIYVRIDRTRKIPVTVLLRALGFGTDAEILDLLGDDEYIR 219 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + L+ + GE +++ + L K Sbjct: 220 NTLDKDNTDSTDKALI------EIYERLRPGEPPTLDNARSLLYARFFDPKRYDLANVGR 273 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ ETGEI EAG ++D + L+EI + Sbjct: 274 YKINKKLHIKNRLFNQRLAETLVHPETGEIIAEAGQLVDRRLLDEI------------LP 321 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + V + + + V P + Sbjct: 322 CLEEGVGFKEYSVPNGVLESDHIPMQTIDVFSPIE----------------------DGK 359 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 V +V N + +V++I DII+ I ++L +G G DDID+LGNRR+RSVGE+ Sbjct: 360 VVKVISNGVI----DKNVKNITPADIISSINYFINLLHGIGNTDDIDHLGNRRLRSVGEL 415 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 416 LQNQFRIGLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 475 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL++FA Sbjct: 476 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFA 535 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIE PYR+V G VT+++VY++A EE+N +AQAN+ L+EDG+F + V+ R Sbjct: 536 RINEYGFIEAPYRRVDPKTGVVTDEIVYMTADEEDNYVVAQANAELNEDGTFAADNVYVR 595 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + +P+E++D++D SPKQVVS+A +LIPFLENDDSNR LMG NMQRQAVPLL +A Sbjct: 596 YKDEILTLPKERVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLMPKA 655 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDI-YRLMKF 767 P VGTGME AK SG +VAK GI+E+V I +R E SG ++L KF Sbjct: 656 PLVGTGMEYKAAKDSGVCVVAKHDGIIEKVSGNEIWLRRQEEVDGRLVSGNITKFKLHKF 715 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ TC+NQRPLV G V+ DI+ADGPST+ G+LALGRN++VAFM W GYN+ED++ Sbjct: 716 MRSNQGTCINQRPLVLEGQRVKAGDILADGPSTEQGELALGRNVVVAFMTWEGYNYEDAI 775 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 L+SE++V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ LKN+DE GII VGAE Sbjct: 776 LLSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRVGAE 835 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFN 946 + GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G VVDV++F Sbjct: 836 IGAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFT 894 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 186/527 (35%), Positives = 267/527 (50%), Gaps = 68/527 (12%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + I++ ++ G V GDIL + + + + ++ A Sbjct: 705 GNITKFKLHKFMRSNQGTCINQRPLVLEGQRVKAGDILADGPSTE-QGELALGRNVVVAF 763 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D L +S +V ++ I++ E + E + RD + Sbjct: 764 MTWEGYNYEDAIL-----LSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE 818 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 +N+ R I G +G K T ++ R F + +V+ Sbjct: 819 DALKNLDER-GIIRVGAEIGAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSL 877 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 + + + K+ + GD++PPGV ++V+V++A KR I GDKMAGRHGN Sbjct: 878 RVPHGTDGIVVDV------KVFTHENGDELPPGVNQLVRVYIAQKRKISQGDKMAGRHGN 931 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG+++RILP EDMPFL DGTPV++VLNPLGVPSRMN+GQ+ E HLG A LG + + + Sbjct: 932 KGVIARILPEEDMPFLPDGTPVEVVLNPLGVPSRMNIGQVLEVHLGMAAKQLGIHVATPV 991 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 D D VFD Sbjct: 992 FDGAHEYD---------------------------------------------VFD---- 1002 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 + A + +G++ LYDG TGE F+R VTVG +YM+KL HMV DK++ARSTG YS Sbjct: 1003 -----TMEEAGMQRNGKTKLYDGRTGEEFEREVTVGVMYMIKLAHMVDDKIHARSTGPYS 1057 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 LVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YESIV G Sbjct: 1058 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGE 1117 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKC 1383 + E G PESF VL+KE+Q+LG+ + + + + M+E+ D + Sbjct: 1118 NVPEPGVPESFKVLIKELQSLGMDVKILSGDEEEIE-MKELDDEDDA 1163 >gi|184154057|ref|YP_001842398.1| DNA-directed RNA polymerase subunit beta [Lactobacillus reuteri JCM 1112] gi|227363828|ref|ZP_03847935.1| DNA-directed RNA polymerase [Lactobacillus reuteri MM2-3] gi|325683039|ref|ZP_08162555.1| DNA-directed RNA polymerase subunit beta [Lactobacillus reuteri MM4-1A] gi|183225401|dbj|BAG25918.1| DNA-directed RNA polymerase beta subunit [Lactobacillus reuteri JCM 1112] gi|227071185|gb|EEI09501.1| DNA-directed RNA polymerase [Lactobacillus reuteri MM2-3] gi|324977389|gb|EGC14340.1| DNA-directed RNA polymerase subunit beta [Lactobacillus reuteri MM4-1A] Length = 1205 Score = 853 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 419/964 (43%), Positives = 588/964 (60%), Gaps = 80/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++++P+LIE+Q SY+ F+ +GL+ F Sbjct: 4 LAGHLVKYGKHRTRRSYSRIKEVLELPNLIEIQTDSYNWFM----------EKGLREMFD 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ VD+ D Y+ PL +TLRL Sbjct: 54 DIMPIDDFQGKLSLEFVDYQLLEPKYTVDEAREHDANYSAPLHVTLRLT---------NH 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG+++ + + +G+ Y Sbjct: 105 ETGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYSEENDK---NGRPNY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFY-PKIVY 238 IP++G W++ E D+K++ +VRIDR RK+P+T + ALG S+ EI+ F Sbjct: 162 GATFIPNRGAWLEYETDAKNVSYVRIDRTRKLPMTELIRALGFGSDDEIIDMFGGDSETL 221 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK--- 294 S D +A D V + + GE +S + L + K + Sbjct: 222 SLTLDKD-VHKNAEDSRVEEALKDIYERLRPGEPKTADSARSLLTARFFDPKRYDMAPVG 280 Query: 295 -----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYV 349 + L G +AE + + +TGE+ + GD + ++ L ++ P L Sbjct: 281 RYKTNKKLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVTKELLNKLE-------PYLDR 333 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D Y +A++ + + + + D D+ Sbjct: 334 DDFKTITY----------TPSDEAVVTEPVKL-----------QKILVYSKNDPDR---- 368 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 + + N P + +HI DI+A + +L+ G G+ DDID+LGNRR+RSVGE Sbjct: 369 -----VVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEGIGSTDDIDHLGNRRIRSVGE 423 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +L+NQ+R+GL RMER ++ER+S D D+V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 424 LLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQT 483 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+ Sbjct: 484 NPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSY 543 Query: 590 ARVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 ARVN YGFIETPYR+V D KVT+ + YL+A EE+N IAQAN+ L++DGSF ++ V Sbjct: 544 ARVNKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNFIIAQANTPLNDDGSFVDDQVMA 603 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R + I E ID++D SPKQVVS+A++ IPFLENDDSNR LMG NMQRQAVPL+ Sbjct: 604 RDKDDYIETSVENIDYMDVSPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLINPH 663 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 AP V TG++ A SG A++AK+ G VE VDA + +R +G LD Y+LMKF Sbjct: 664 APLVSTGIDYKAAHDSGVAMIAKKPGTVEYVDAREVRVREEDGTLD-------TYKLMKF 716 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN NQRP+VKVG+ V +D++ADGPS + G+LALG+N L+AFM W GYNFED++ Sbjct: 717 RRSNGGKNYNQRPIVKVGEHVDADDVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAI 776 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 I+ER+V +DV+TSIHIE +E AR+TKLGPEE+TR+IPNV ++ LK++DE GI+ VGAE Sbjct: 777 AINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVGDDALKDLDENGIVRVGAE 836 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V+ GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G + DV++F R Sbjct: 837 VHDGDILVGKVTPKGMTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTR 896 Query: 948 HGID 951 D Sbjct: 897 ENGD 900 Score = 382 bits (982), Expect = e-103, Method: Composition-based stats. Identities = 223/1067 (20%), Positives = 369/1067 (34%), Gaps = 172/1067 (16%) Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 ++ ++ ++AL DIY +RPG+ T A S+ FFD +YD++ VGR K N Sbjct: 227 KDVHKNAEDSRVEEALKDIYERLRPGEPKTADSARSLLTARFFDPKRYDMAPVGRYKTNK 286 Query: 419 RLNLD-------------TPDDVRHI-------RKEDIIAIIKILVDLRNGKGTIDDIDN 458 +L L PD + KE + + L T D Sbjct: 287 KLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVTKELLNKLEPYLDRDDFKTITYTPSDE 346 Query: 459 LGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL----INAKPVVSAVC 514 + ++L + R+ I ++ + P D+ + + Sbjct: 347 AVVTEPVKLQKILVYS-KNDPDRVVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEGIG 405 Query: 515 EFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAET 574 L R A + V + + V P I P Sbjct: 406 STDDIDHLGNRRIRSVGELLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVA 465 Query: 575 SEGHNIGLVSSLTSFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLS 618 S G + N G + R V D T+ Sbjct: 466 SIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCP 525 Query: 619 AMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR--EKIDFIDASPKQVVSIAA 676 E I NS + + +KID++ A + IA Sbjct: 526 IETPEGPNIGLINSLSSYARVNKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNFIIAQ 585 Query: 677 SLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 + P +D + M R + ++ T +E++ V Sbjct: 586 ANTPL---NDDGSFVDDQVMAR-------DKDDYIETSVENIDYMD-------VSPKQVV 628 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 V + I + QR PLV G Sbjct: 629 SVASACIPFLENDDSNRALMGA-------NMQRQAVPLINPHAPLVSTGI---------- 671 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 +++ + M+++ T +++ EV R+ + Sbjct: 672 -------------------------DYKAAHDSGVAMIAKKPGTVEYVDAREVRVRE-ED 705 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + + G KN ++ I+ VG V+ D+L + + + + L A Sbjct: 706 GTLDTYKLMKFRRSNGGKNYNQRPIVKVGEHVDADDVLADGPS-MEQGELALGQNPLIAF 764 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D V V + + E + E E + DD Sbjct: 765 MTWQGYNFEDAIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTRE-IPNVGDDALK 823 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 LD N R+ + + + G K T LS++ Sbjct: 824 DLDENGIVRVGAEVHDGDILVGKVTPKGMTELSAEE------------------------ 859 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 +I ++ + + G+++ VKVF GD+++ Sbjct: 860 ------RLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTREN-----GDELSP---- 904 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG-WACVGLGKKIKSL 1155 G+ + + R+ + Q + +G G K Sbjct: 905 -GVNTMV--------------------------RVYIAQKRKIQVGDKMSGRHGNKGTVS 937 Query: 1156 INDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGAD 1215 I + + P + ++ ++ +++ + + G+ ++TPVFDGA Sbjct: 938 IVVPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQLLELHLGMAARRLGIHMATPVFDGAS 997 Query: 1216 EEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSY 1275 ++ + +R + E G++ILYDG TGEPF+ + VG ++ LKL HMV DK++ARSTG Y Sbjct: 998 DKDVWDAVRESGFPEDGKTILYDGRTGEPFENRIAVGSMHYLKLAHMVDDKIHARSTGPY 1057 Query: 1276 SLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAG 1335 SLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD VGR R Y++I+ G Sbjct: 1058 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVRTYDAIING 1117 Query: 1336 NDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 + G PESF VLVKE+QALGL + + + K D ++ Sbjct: 1118 QPIPKPGVPESFRVLVKELQALGLDMKVLDGNNKEIQLKNMDEDDDE 1164 >gi|257888773|ref|ZP_05668426.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium 1,141,733] gi|257899845|ref|ZP_05679498.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium Com15] gi|293572776|ref|ZP_06683730.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium E980] gi|257824827|gb|EEV51759.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium 1,141,733] gi|257837757|gb|EEV62831.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium Com15] gi|291607126|gb|EFF36494.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium E980] Length = 1205 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 1 MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 51 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 102 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 159 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 219 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 278 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + +V P D Sbjct: 326 FIDNGLNSVTYYPSEDGVVTDPMTVQVIKVFSPRDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 362 --EREVNVIGNGYPEAAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 480 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 540 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 660 PWVGTGMEYKSAHDSGAALLCKHDGVVEYVDASEIRVRRDNGALDK-------YDVTKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 713 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 833 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 892 Query: 949 GID 951 D Sbjct: 893 AGD 895 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 176/504 (34%), Positives = 236/504 (46%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + Sbjct: 725 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 775 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 776 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 827 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 828 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 886 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 887 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 941 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 942 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 991 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 992 ------------------SDEDVWETVREAGMASDAKTVLYDG----------------- 1016 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1017 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1067 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1068 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1127 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + Sbjct: 1128 VKELQSLGLDMRVLDIEETEIELR 1151 >gi|257880397|ref|ZP_05660050.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium 1,230,933] gi|257882393|ref|ZP_05662046.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium 1,231,502] gi|257891725|ref|ZP_05671378.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium 1,231,410] gi|257894064|ref|ZP_05673717.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium 1,231,408] gi|258614170|ref|ZP_05711940.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecium DO] gi|260559360|ref|ZP_05831541.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium C68] gi|293553569|ref|ZP_06674193.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium E1039] gi|293564002|ref|ZP_06678408.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium E1162] gi|293569984|ref|ZP_06681064.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium E1071] gi|294616962|ref|ZP_06696682.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium E1636] gi|294623902|ref|ZP_06702729.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium U0317] gi|257814625|gb|EEV43383.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium 1,230,933] gi|257818051|gb|EEV45379.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium 1,231,502] gi|257828085|gb|EEV54711.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium 1,231,410] gi|257830443|gb|EEV57050.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium 1,231,408] gi|260074459|gb|EEW62780.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium C68] gi|291587356|gb|EFF19240.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium E1071] gi|291590116|gb|EFF21905.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium E1636] gi|291596664|gb|EFF27888.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium U0317] gi|291602144|gb|EFF32372.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium E1039] gi|291603920|gb|EFF33448.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium E1162] Length = 1205 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 1 MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 51 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 102 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 159 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 219 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 278 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + +V P D Sbjct: 326 FIDNGLNSVTYYPSEDGVVTDPMTVQVIKVFSPRDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 362 --EREVNVIGNGYPEAAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 480 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 540 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 660 PWVGTGMEYKSAHDSGAALLCKHDGVVEYVDASEIRVRRDNGALDK-------YDVTKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 713 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 833 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 892 Query: 949 GID 951 D Sbjct: 893 AGD 895 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 176/504 (34%), Positives = 236/504 (46%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + Sbjct: 725 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 775 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 776 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 827 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 828 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 886 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 887 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 941 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 942 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 991 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 992 ------------------SDEDVWETVREAGMASDAKTVLYDG----------------- 1016 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1017 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1067 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1068 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1127 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + Sbjct: 1128 VKELQSLGLDMRVLDIEETEIELR 1151 >gi|257886148|ref|ZP_05665801.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium 1,231,501] gi|257822004|gb|EEV49134.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium 1,231,501] Length = 1205 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 1 MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 51 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 102 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 159 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 219 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 278 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + +V P D Sbjct: 326 FIDNGLNSVTYYPSEDGVVTDPMTVQVIKVFSPRDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 362 --EREVNVIGNGYPEAAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 480 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 540 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 660 PWVGTGMEYKSAHDSGAALLCKHDGVVEYVDASEIRVRRDNGALDK-------YDVTKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 713 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 833 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 892 Query: 949 GID 951 D Sbjct: 893 AGD 895 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 176/504 (34%), Positives = 236/504 (46%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + Sbjct: 725 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 775 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 776 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 827 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 828 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 886 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 887 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 941 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 942 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 991 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 992 ------------------SDEDVWETVREAGMASDAKTVLYDG----------------- 1016 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1017 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1067 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1068 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1127 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + Sbjct: 1128 VKELQSLGLDMRVLDIEETEIELR 1151 >gi|258448430|ref|ZP_05696545.1| RNA polymerase subunit beta [Staphylococcus aureus A6224] gi|257858299|gb|EEV81186.1| RNA polymerase subunit beta [Staphylococcus aureus A6224] Length = 1183 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 443/964 (45%), Positives = 597/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLDELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 249/1158 (21%), Positives = 428/1158 (36%), Gaps = 130/1158 (11%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL++VGR K N Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 419 RLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +L+L + + E ++ +L + + N + G + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 471 LKNQYRLGLLRME----RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLE 526 + + +++ + + I +++++ FF Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRTTTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYT 397 Query: 527 EHVNSLSRITHTRRLSALGQG--GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + ++ L RRL ++G+ R R V R+ +T L++ Sbjct: 398 DDIDHLG----NRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTESITPQQLIN 449 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 A + + + + +++ + L Sbjct: 450 IRPVIASIKEFFGSSQLSQFMDQANPLDELTH---------------------KRRLSAL 488 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPL 703 E + + + + I + + S + Sbjct: 489 GPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRK 548 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 + + + ++ + A + +VA+ + + + + Sbjct: 549 VDLDTHAITDQIDYLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMA 603 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 K + + + +D ++ A+ A G Sbjct: 604 KEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEH 663 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNI 876 + + ++ H+E E++ R G + Sbjct: 664 VAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCY 723 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 ++ I+ VG V +IL + M ++ + D + +S Sbjct: 724 NQRPIVAVGDVVEYNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MS 777 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 +V ++ I++ E + E + RD + +N+ R + G Sbjct: 778 ERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVK 836 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 G K T ++ R F + +V+ + K Sbjct: 837 DGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVK 890 Query: 1057 IEKIQWGDD-MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 + + GDD + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG Sbjct: 891 VFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDG 950 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 P+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 951 RPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------- 1003 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + A + G +++ Sbjct: 1004 ------------------IEEAGMARDG-----------------------------KTV 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1017 LYDGRTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1076 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q Sbjct: 1077 EMEVWALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQ 1136 Query: 1356 ALGLSIDLENSRTKNSAK 1373 +LGL + + + + Sbjct: 1137 SLGLDVKVMDEQDNEIEM 1154 >gi|70727464|ref|YP_254380.1| DNA-directed RNA polymerase subunit beta [Staphylococcus haemolyticus JCSC1435] gi|82581604|sp|Q4L3K3|RPOB_STAHJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|68448190|dbj|BAE05774.1| DNA-directed RNA polymerase beta subunit [Staphylococcus haemolyticus JCSC1435] Length = 1183 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 445/964 (46%), Positives = 600/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SYD FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFL----------KEGLLEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG ++ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSNDQEIIDLLGDSEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI E G V+D + L+EI Sbjct: 273 YKANKKLHLKHRLFNQRLAEPIVNSETGEIVAEEGTVLDRRKLDEIMEVLET-------- 324 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N+ + V D+ + + + + D + + Sbjct: 325 NANSEVFELEGTVIDEPVEIQSIKVYV----------------------PNDEEGRTTTV 362 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G +V+ I DIIA + +L NG G DDID+LGNRR+RSVGE+ Sbjct: 363 IGNAL--------PDSEVKCITPADIIASMSYFFNLLNGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D DS+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTNSITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNTEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKYRGRVEHVESKEILVRRLVEENGTEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNTGTCYNQRPIVSVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSENALKNLDDRGIVYVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 248/1163 (21%), Positives = 429/1163 (36%), Gaps = 115/1163 (9%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + +D + ++ Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSNDQEIIDLLGDSEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL++VGR K N Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKANK 277 Query: 419 RLNLDTPD-DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +L+L + R +I+ + + + + E+ + + + Sbjct: 278 KLHLKHRLFNQRLAEPIVNSETGEIVAEEGTVLDRRKLDEIMEVLETNANSEVFELEGTV 337 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLIN--AKPVVSAVCEFFCSSQLSQLEEHVN---SL 532 +E + D + + N V + + +S +N Sbjct: 338 IDEPVEIQSIKVYVPNDEEGRTTTVIGNALPDSEVKCITPADIIASMSYFFNLLNGIGYT 397 Query: 533 SRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARV 592 I H G + + + + + + R+ +T L++ A + Sbjct: 398 DDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASI 457 Query: 593 NAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGE 652 + + + ++ + L E Sbjct: 458 KEFFGSSQLSQFMDQANPLAELTH---------------------KRRLSALGPGGLTRE 496 Query: 653 EILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 + + + + I + + S + + + + Sbjct: 497 RAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTNSI 556 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 ++ + A + +VA+ + + + + K + Sbjct: 557 TDQIDYLTADEEDSYVVAQANSRL-----DENGRFLDDEVVCRFRGNNTVMAKEKMDYMD 611 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 + + +D ++ A+ A G + Sbjct: 612 VSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNTEAPFVGTGMEHVAARDSGA 671 Query: 832 RMVSEDVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNIDECGIICV 884 + ++ H+E E++ R G + ++ I+ V Sbjct: 672 AITAKYRGRVEHVESKEILVRRLVEENGTEHEGELDRYPLAKFKRSNTGTCYNQRPIVSV 731 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 G V +IL + M ++ + D + +S +V + Sbjct: 732 GDVVEYNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MSERLVKDDV 785 Query: 945 FNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKK 1004 + I++ E + E + RD + +N+ R + G G K Sbjct: 786 YTSIHIEEYESEARDTKLGPEEITRDIPNVSENALKNLDDR-GIVYVGAEVKDGDILVGK 844 Query: 1005 STVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD 1064 T ++ R F + +V+ + K+ + GD Sbjct: 845 VTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVKVFNREEGD 898 Query: 1065 D-MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLN 1123 D + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LN Sbjct: 899 DTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLN 958 Query: 1124 PLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE 1183 PLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 959 PLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST--------------- 1003 Query: 1184 KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243 + A + G +++LYDG TGE Sbjct: 1004 ----------IEEAGMARDG-----------------------------KTVLYDGRTGE 1024 Query: 1244 PFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQ 1303 PFD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++ Sbjct: 1025 PFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1084 Query: 1304 AYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 AYGAAY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q+LGL + + Sbjct: 1085 AYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKV 1144 Query: 1364 ENSRTKNSAKMEEIPDFNKCELK 1386 + + M ++ D + E K Sbjct: 1145 MDEQDNEIE-MADVDDEDATERK 1166 >gi|294617122|ref|ZP_06696783.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium E1679] gi|291596618|gb|EFF27850.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium E1679] Length = 1205 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 1 MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 51 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 102 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 159 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 219 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 278 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + +V P D Sbjct: 326 FIDNGLNSVTYYPSEDGVVTDPMTVQVIKVFSPRDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 362 --EREVNVIGNGYPEAAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 480 PLDELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 540 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 660 PWVGTGMEYKSAHDSGAALLCKHDGVVEYVDASEIRVRRDNGALDK-------YDVTKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 713 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 833 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 892 Query: 949 GID 951 D Sbjct: 893 AGD 895 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 176/504 (34%), Positives = 236/504 (46%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + Sbjct: 725 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 775 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 776 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 827 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 828 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 886 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 887 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 941 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 942 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 991 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 992 ------------------SDEDVWETVREAGMASDAKTVLYDG----------------- 1016 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1017 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1067 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1068 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1127 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + Sbjct: 1128 VKELQSLGLDMRVLDIEETEIELR 1151 >gi|304405627|ref|ZP_07387286.1| DNA-directed RNA polymerase, beta subunit [Paenibacillus curdlanolyticus YK9] gi|304345666|gb|EFM11501.1| DNA-directed RNA polymerase, beta subunit [Paenibacillus curdlanolyticus YK9] Length = 1181 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 440/967 (45%), Positives = 601/967 (62%), Gaps = 83/967 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++++P+LIE+Q+ SY+ FL + L F+ Sbjct: 1 MAGQLVQYGR-RTRRSYARINEVLEVPNLIEIQQKSYEKFLDAD----------LLELFQ 49 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+ RD+T+A PL++ +RL+ K Sbjct: 50 DISPIQDFTGNLSLEFIDYSLGEPKYSVDESKERDVTFAAPLRVKVRLL---------NK 100 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F + +GK Y Sbjct: 101 ETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFS---TKVDKNGKRTY 157 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KDII+VRIDR RK+PVT L ALG ++ EIL Sbjct: 158 TATVIPNRGAWLELETDAKDIIYVRIDRTRKIPVTVLLRALGFSTDAEILDLLGQDEYIR 217 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + L+ + GE +++ K L K Sbjct: 218 NTLDKDNTDSTEKALI------EIYERLRPGEPPTLDNAKSLLVARFFDPKRYDLANVGR 271 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ TGEI EAG +ID + L+EI + Sbjct: 272 YKINKKLHIKNRLFNQRLAETLVDPATGEIIAEAGQIIDRRLLDEI------------LP 319 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + +N + V + + L V P Y+ Sbjct: 320 RLESNVGFKTYHVANGVLNADSIPLQAINVFSP----------------------YEDGK 357 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 V ++ N + V+HI DII+ I ++L +G G DDID+LGNRR+RSVGE+ Sbjct: 358 VIKIVSNGII----DKTVKHITPADIISSINYFINLLHGIGNTDDIDHLGNRRLRSVGEL 413 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 414 LQNQFRIGLSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 473 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVHP+HYGR+CP ET EG NIGL++SL++FA Sbjct: 474 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLINSLSTFA 533 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIE PYR V G VT + Y++A EE+N +AQAN+ L E+G+F E++V R Sbjct: 534 RINEYGFIEAPYRWVDPKTGVVTEQIDYMTADEEDNYVVAQANAKLTEEGNFAEDVVLVR 593 Query: 649 CA---GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 + +P E++D++D SPKQVVS+A +LIPFLENDDSNR LMG NMQRQAVPLL Sbjct: 594 YNKQRDNILTMPSERVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLI 653 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPS-TSGVDIYRL 764 +AP VGTGME AK SG IV+K G++E+V A I +R +E T + ++L Sbjct: 654 PKAPLVGTGMEHKSAKDSGVCIVSKYDGVIERVSANEIWLRRIEMLDGKQVTGDLVKHKL 713 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 KF RSNQ TC+NQRPLV GD +R+ DI+ADGPST+ G+LALGRN++VAFM W GYN+E Sbjct: 714 HKFMRSNQGTCINQRPLVNKGDIIRKGDIMADGPSTEQGELALGRNVVVAFMTWEGYNYE 773 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 D++L+SE++V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV EE LKN+DE GII V Sbjct: 774 DAILLSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKNLDERGIIRV 833 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 GAE++ GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G VVDV++ Sbjct: 834 GAEISAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKV 893 Query: 945 FNRHGID 951 F R D Sbjct: 894 FTRENGD 900 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 172/440 (39%), Positives = 233/440 (52%), Gaps = 70/440 (15%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEILCGQNAVSGPKG 1001 K + S+ E+ E ARD + R+I I G +G Sbjct: 784 KEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKNLDERGIIRVGAEISAGDIL 843 Query: 1002 FKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQ 1061 K T ++ R F + +V+ + + + K+ + Sbjct: 844 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDV------KVFTRE 897 Query: 1062 WGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIV 1121 GD++PPGV ++V+ ++A KR I GDKMAGRHGNKG+++RI+P EDMPFL DGTPV++V Sbjct: 898 NGDELPPGVNQLVRAYIAQKRKISEGDKMAGRHGNKGVIARIMPEEDMPFLPDGTPVEVV 957 Query: 1122 LNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSH 1181 LNPLGVPSRMN+GQ+ E HLG AC LG + + D D Sbjct: 958 LNPLGVPSRMNIGQVLEVHLGMACKRLGIHAATPVFDGAREYD----------------- 1000 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLT 1241 VF + + A + +G+++LYDG T Sbjct: 1001 ----------------------------VF---------NAMEEAGMQRNGKTVLYDGRT 1023 Query: 1242 GEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWC 1301 GE F+R VTVG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1024 GEEFEREVTVGVMYMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA 1083 Query: 1302 IQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361 ++AYGAAY LQE+LT+KSDDVVGR + YESIV G + E G PESF VL+KE+Q+LG+ + Sbjct: 1084 LEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLGMDV 1143 Query: 1362 DLENSRTKNSAKMEEIPDFN 1381 + + + E D + Sbjct: 1144 KILSEDEEEIELREADDDED 1163 >gi|259046407|ref|ZP_05736808.1| DNA-directed RNA polymerase, beta subunit [Granulicatella adiacens ATCC 49175] gi|259036952|gb|EEW38207.1| DNA-directed RNA polymerase, beta subunit [Granulicatella adiacens ATCC 49175] Length = 1212 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 430/989 (43%), Positives = 603/989 (60%), Gaps = 89/989 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A V G RVR+ + + E++++P+LIE+Q SY FL +EG++ FK Sbjct: 4 LAHHDVKYGRHRVRRSYARISEVLELPNLIEIQTDSYQWFL----------DEGIREMFK 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI +G LEF+ YE PK+++ + D YA P+ + +RL+ K Sbjct: 54 DISPIEDHTGNLSLEFLDYELHAPKYNLQEARNHDANYAAPIYVKMRLV---------NK 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++K+Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG +F R +GK LY Sbjct: 105 ETGEVKDQEVFFGDFPLMTEMGTFIINGAERVIVSQLVRSPGAYFH---DRPDKNGKQLY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W++ E DSKDI +VRIDR RK+P+T + ALG S+E I F Sbjct: 162 GSTLIPNRGAWLEYETDSKDISYVRIDRTRKIPLTVLVRALGFGSDELIQEIFGDSETLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVD-IDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG 297 D D + + D + GE ES + L + + + +G Sbjct: 222 LTLDKDVHKRM--DESRTEEALKDIYDRLRPGEPKTAESSRNLLTARFFDPRRYDLAAVG 279 Query: 298 ITS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYV 349 + L +AE++V+ ETGEI +E G V++ +E++ + + + Sbjct: 280 RYKVNKKLNLKNRLLHQTIAENLVDPETGEIVVEKGTVLERDVMEKVVEVLEKGANLFTL 339 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 + ++ ++ V P D Sbjct: 340 HPSEDGVI------------KEPVIIQTVEVYSPADP----------------------- 364 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 + + N + +DV+H+ DIIA I ++L G GT DDID+LGNRR+RSVGE Sbjct: 365 ---ERVIKVIGNGNVTEDVKHVTASDIIATISYFLNLYEGIGTTDDIDHLGNRRIRSVGE 421 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +L+NQ+R+GL RMER ++ER+S D +V PQ L+N +PVV+A+ EFF SSQLSQ + Sbjct: 422 LLQNQFRIGLSRMERVVRERMSIQDTATVTPQQLVNIRPVVAAIKEFFGSSQLSQFMDQT 481 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++ Sbjct: 482 NPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTY 541 Query: 590 ARVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 A++N YGFIETPYR+V KVT+ + YL+A EE++ +AQANS L+EDGSF ++V Sbjct: 542 AKINKYGFIETPYRRVDWNTHKVTDKIDYLTADEEDSFVVAQANSPLNEDGSFVNDVVMA 601 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R E + VP E++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPLL + Sbjct: 602 RYVSENLEVPVERVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLNPK 661 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 APF+GTGME V A SG A++ KR G+VE VDA + +R+ +G LD Y + KF Sbjct: 662 APFIGTGMEYVSAHDSGVALLCKRDGVVEFVDAKEVRVRTADGSLD-------TYHITKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 SN C NQRP+V GD+V + +I+ADGPS + G+LALG+N+LVAFM W GYN+ED++ Sbjct: 715 HGSNAGMCYNQRPIVAQGDKVVKGEILADGPSMEKGELALGQNVLVAFMTWEGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHI++++ ARDTKLGPEEITR+IPNV E+ LKN+D GII +GAE Sbjct: 775 IMSERLVKDDVYTSIHIDDYDSEARDTKLGPEEITREIPNVGEDALKNLDADGIIRIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +PEE+LL AIFGEKA +VRDTSLRVP G G V DVR+F R Sbjct: 835 VKDGDILVGKVTPKGLTEQSPEERLLHAIFGEKAREVRDTSLRVPHGGGGIVRDVRVFTR 894 Query: 948 -------HGIDKNERSISVEREQIELLAR 969 G++K R V++ +I + Sbjct: 895 AAGDELAPGVNKLVRVYIVQKRKINEGDK 923 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 177/529 (33%), Positives = 242/529 (45%), Gaps = 67/529 (12%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 T G + ++ I+ G +V G+IL + + + + + Sbjct: 700 RTADGSLDTYHITKFHGSNAGMCYNQRPIVAQGDKVVKGEILADGPS-MEKGELALGQNV 758 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 L A + + D + V D + H D + + + E+ + Sbjct: 759 LVAFMTWEGYNYEDAVIM----SERLVKDDVYTSIHIDDYDSEARDTKLGPEEITREIPN 814 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 + L I G G K T S R F + +V+ Sbjct: 815 VGEDALKN--LDADGIIRIGAEVKDGDILVGKVTPKGLTEQSPEERLLHAIFGEKAREVR 872 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + ++ GD++ PGV ++V+V++ KR I GDKMAG Sbjct: 873 DTSLRVPHGGGGIVRDV------RVFTRAAGDELAPGVNKLVRVYIVQKRKINEGDKMAG 926 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG+VSRI+P EDMPFL DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I Sbjct: 927 RHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARELGIYI 986 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D + D+ + T ++D Sbjct: 987 ATPVFDGAQDEDVWGTVAEAGMARDAK----------------------------TILYD 1018 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G TGEPFD V+VG +YM+KL HMV DK++ARS Sbjct: 1019 G--------------------------RTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSI 1052 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YESI Sbjct: 1053 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYESI 1112 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 V G G PESF VLVKE+QALGL + + +++ + + D Sbjct: 1113 VKGQQISRPGVPESFRVLVKELQALGLDMKVLDAQDEEIKLEDMDEDEG 1161 >gi|167769915|ref|ZP_02441968.1| hypothetical protein ANACOL_01256 [Anaerotruncus colihominis DSM 17241] gi|167667906|gb|EDS12036.1| hypothetical protein ANACOL_01256 [Anaerotruncus colihominis DSM 17241] Length = 1251 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 433/954 (45%), Positives = 578/954 (60%), Gaps = 56/954 (5%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 R F E++ +P+LIEVQK SY FL +EGL+ FK V PIT Sbjct: 8 TQGKTTRMSFSHIDEVLQMPNLIEVQKNSYQWFL----------DEGLKEVFKDVSPITD 57 Query: 68 FSGAAMLEFVSYEFD-PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIK 126 + +L+F+ Y D PK+ +++C RD TYA PL++ L+ K ++K Sbjct: 58 YQDNLVLDFIDYHLDDKPKYTIEECKERDATYAAPLRVRASLL---------NKETGEVK 108 Query: 127 EQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIP 186 EQ I+MGD PLMT GTF+I G +R++VSQL RSPG+++ + SGK LY +IP Sbjct: 109 EQDIFMGDFPLMTDSGTFIINGAERVIVSQLVRSPGVYYGSSHDK---SGKELYTTTVIP 165 Query: 187 DQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVY--SQRGD 243 ++G W++ E DS D+ +VRID+ RK+PVT+F+ ALG S E I+ F + D Sbjct: 166 NRGAWLEYETDSNDVFYVRIDKNRKLPVTTFVRALGFSSNESIIDFFGDDERIMATLEKD 225 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIES--GKKLTSGLLKSLKEKGVKFLGITSD 301 A + +D+ + I+S L K + K K L IT Sbjct: 226 GTANTEEALLEVYRKLRPGEPPTVDSAQSHIDSLFFDPRRYDLSKVGRYKYNKKLAITP- 284 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 + G + + + TGE+ A V+ + E I + + + I D Sbjct: 285 RILGRTTSRPVADPLTGELLAGADTVLTRELAERIGRAGVDTVYIRIGDDREMRVLSNGM 344 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 + A L I +R F L D D R + R + Sbjct: 345 VDIKDFVGFDCAPLGINEKVR-------------FAVLREILDACDGEDALREAIAARRD 391 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 P +HI K+DI + I L L +G GT+DDID+LGNRR+RSVGE+L+NQ+R+G R Sbjct: 392 ELIP---KHIIKDDIFSSINYLCGLGHGIGTVDDIDHLGNRRIRSVGELLQNQFRIGFSR 448 Query: 482 MERSIKERISSV--DIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 MER I+ER+++ D+D V PQ LIN +PVV+++ EFF SS LSQ + N L+ +TH R Sbjct: 449 MERVIRERMATQAQDMDVVTPQALINIRPVVASIKEFFGSSPLSQFMDQTNPLAELTHKR 508 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+S L +FA++N YGF+E Sbjct: 509 RLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLISYLATFAKINEYGFVE 568 Query: 600 TPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 PYR+V V ++V Y++A E+ +AQAN L EDG F E V R ++ Sbjct: 569 APYRRVDKATGVVLDEVEYMTADIEDMYIVAQANEPLTEDGKFANEKVSVRYRDAVMVCE 628 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 REK+D++D SPK VVS+A ++IPFLENDD+NR LMG NMQRQAVPLL EAP V TGME Sbjct: 629 REKVDYMDVSPKMVVSVATAMIPFLENDDANRALMGANMQRQAVPLLVPEAPIVATGMEY 688 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 A SG A+V+K AG+VE V A IVIR S Y L+KF RSNQ TC+N Sbjct: 689 KSAVDSGVAVVSKHAGVVESVSANEIVIR-------DSRGESHSYHLIKFMRSNQGTCIN 741 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 QRP+VK G+E+ +IADGPST G+++LGRNMLV FM W GYN+ED++LI+ER+V +D Sbjct: 742 QRPIVKKGEEISVGQVIADGPSTAGGEISLGRNMLVGFMTWEGYNYEDAVLINERLVKDD 801 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 ++TSIHIEE+E+ +RDTKLGPEEITRDIPNV ++ L+ +DE GII VGAEV GDILVGK Sbjct: 802 IYTSIHIEEYEIESRDTKLGPEEITRDIPNVGDDALRELDERGIIRVGAEVRAGDILVGK 861 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 +TPKGE+ + EE+LLRAIFGEKA +VRDTSLRVP G G +VDV++F R D Sbjct: 862 VTPKGETELNAEERLLRAIFGEKAREVRDTSLRVPHGEYGIIVDVKVFTRENCD 915 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 150/538 (27%), Positives = 217/538 (40%), Gaps = 77/538 (14%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 G I + I++ I+ G E++ G ++ + G ++ + Sbjct: 717 RDSRGESHSYHLIKFMRSNQGTCINQRPIVKKGEEISVGQVIADGPSTAG-GEISLGRNM 775 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARD 970 L + + D L V + + I+ + + E I + D Sbjct: 776 LVGFMTWEGYNYEDAVLINERLVKDDIYTSIHIEEYEIESRDTKLGPEEITRDIPNVGDD 835 Query: 971 ---KDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 + DE+ I+ R +IL G+ G L + E R Sbjct: 836 ALRELDERGIIRVGAEVRAGDILVGKVTPKGETELNAEERLLRAIFGEKAR--------- 886 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 E K+ + D++ PGV VV+ ++A Sbjct: 887 --------EVRDTSLRVPHGEYGIIVDVKVFTRENCDELSPGVNMVVRCYIA-------- 930 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 K +S VG Sbjct: 931 --------QKRKIS-------------------------------VG-------DKMAGR 944 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 G K + + P L+ V+ +++ V + G V Sbjct: 945 HGNKGVVSRVLPQEDMPYLPDGRPLDIVLNPLGVPSRMNIGQVLEVHLGRAAAELGWKVM 1004 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGADE I L A L G++ L+DG TGE FD PVTVGY+Y LKL+H+V DK+ Sbjct: 1005 TPVFDGADETDIADCLEQAGLSRDGKTWLHDGRTGELFDNPVTVGYMYYLKLHHLVDDKI 1064 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + Sbjct: 1065 HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVK 1124 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 +ESIV G + + G PESF VL+KE+Q+LGL + + + + D + L Sbjct: 1125 TFESIVKGKNVPQPGIPESFKVLIKELQSLGLDMRVLDKDNNEIDLKQTFDDDDNMGL 1182 >gi|330686247|gb|EGG97859.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus epidermidis VCU121] Length = 1183 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 445/964 (46%), Positives = 600/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SYD FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFL----------KEGLLEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKLDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDSEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + L+EI + Sbjct: 273 YKANKKLHLKHRLFNQKLAEPIVNSETGEIVVEEGTVLDRRKLDEIMD--------VLEA 324 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N+ + V D+ + + + + D + + Sbjct: 325 NANSEVFELEGTVIDEPVEIQSIKVYV----------------------PNDDEGRTTTV 362 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 363 IGNAL--------PDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D DS+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTNAITDQIDYLTADEEDSYVVAQANSRLDENGRFIDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI A G VE V++ I++R VE D +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITANHRGRVEHVESNEILVRRLVEQDGQEYEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V GD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAAGDIVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+DE GI+ VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDERGIVYVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 167/446 (37%), Positives = 226/446 (50%), Gaps = 72/446 (16%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEILCGQNAVSGPKG 1001 K++ S+ E+ E ARD + R+I + G G Sbjct: 782 KDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDERGIVYVGAEVKDGDIL 841 Query: 1002 FKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQ 1061 K T ++ R F + +V+ + K+ + Sbjct: 842 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVKVFNRE 895 Query: 1062 WGDD-MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI Sbjct: 896 EGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDI 955 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 +LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 956 MLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------------ 1003 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGL 1240 + A + G +++LYDG Sbjct: 1004 -------------IEEAGMARDG-----------------------------KTVLYDGR 1021 Query: 1241 TGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVW 1300 TGEPFD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1022 TGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1081 Query: 1301 CIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLS 1360 ++AYGAAY LQE+LT KSDD VGR + YESIV G + PESF VL+KE+Q+LGL Sbjct: 1082 ALEAYGAAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPNVPESFRVLMKELQSLGLD 1141 Query: 1361 IDLENSRTKNSAKMEEIPDFNKCELK 1386 + + + + M +I D + E K Sbjct: 1142 VKVMDEQDNEIE-MADIEDEDVTERK 1166 >gi|294779446|ref|ZP_06744845.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis PC1.1] gi|300861604|ref|ZP_07107688.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TUSoD Ef11] gi|294453484|gb|EFG21887.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis PC1.1] gi|300849065|gb|EFK76818.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TUSoD Ef11] gi|323479153|gb|ADX78592.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis 62] Length = 1204 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 425/963 (44%), Positives = 593/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 1 MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 51 DILPIDDFQGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 102 ETGEIKSQEVFFGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 159 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 219 NTIEKD-LHKNASDSRTEEGLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 278 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQIMETL-------------- 323 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 YI N L + +DA++ + T V + + Sbjct: 324 ----GEYIDNGLNSVTYYPSEDAVV--------TEPMTIQVIQVLSPKDP---------- 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N D V+ +R DI+A + +L G +DDID+LGNRR+RSVGE+ Sbjct: 362 --ERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 480 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 539 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ V YL+A E++ +AQANS L+EDG+F ++V R Sbjct: 540 KVNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMAR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL++ + Sbjct: 600 LQSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRS 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 660 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDK-------YMVTKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 713 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAII 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 833 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 892 Query: 949 GID 951 D Sbjct: 893 AGD 895 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 175/499 (35%), Positives = 237/499 (47%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + E M + +L A + + D + V V Sbjct: 725 IVHLGEKVEKGDTLADGPS-MEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + ++L G+ Sbjct: 784 TSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 844 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 887 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA--------------- 991 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D+ V + T ++DG Sbjct: 992 -------------TDEDVWETVREAGMASDAKTVLYDG---------------------- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD ++VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + Sbjct: 1133 SLGLDMRVLDIEEAEIELR 1151 >gi|57651418|ref|YP_185474.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus COL] gi|81695152|sp|Q5HID3|RPOB_STAAC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|57285604|gb|AAW37698.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus COL] Length = 1183 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 441/964 (45%), Positives = 596/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E RDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEVRDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDT LRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTLLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 249/1158 (21%), Positives = 429/1158 (37%), Gaps = 130/1158 (11%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL++VGR K N Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 419 RLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +L+L + + E ++ +L + + N + G + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 471 LKNQYRLGLLRME----RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLE 526 + + +++ + + I +++++ FF Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRTTTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYT 397 Query: 527 EHVNSLSRITHTRRLSALGQG--GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + ++ L RRL ++G+ R R V R+ +T L++ Sbjct: 398 DDIDHLG----NRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTESITPQQLIN 449 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 A + + + + ++ + L Sbjct: 450 IRPVIASIKEFFGSSQLSQFMDQANPLAELTH---------------------KRRLSAL 488 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPL 703 E + + + + I + + S + Sbjct: 489 GPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRK 548 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 + + + ++ + A + +VA+ + + + + Sbjct: 549 VDLDTHAITDQIDYLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMA 603 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 K + + + +D ++ A+ A G Sbjct: 604 KEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEH 663 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNI 876 + + ++ H+E E++ R G + Sbjct: 664 VAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCY 723 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 ++ I+ VG V +IL + M ++ + D + +S Sbjct: 724 NQRPIVAVGDVVEYNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MS 777 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 +V ++ I++ E + + E + RD + +N+ R + G Sbjct: 778 ERLVKDDVYTSIHIEEYESEVRDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVK 836 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 G K T ++ R F + +V+ + + K Sbjct: 837 DGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTLLRVPHGAGGIV------LDVK 890 Query: 1057 IEKIQWGDD-MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 + + GDD + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG Sbjct: 891 VFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDG 950 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 P+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 951 RPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------- 1003 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + A + G +++ Sbjct: 1004 ------------------IEEAGMARDG-----------------------------KTV 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1017 LYDGRTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1076 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q Sbjct: 1077 EMEVWALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQ 1136 Query: 1356 ALGLSIDLENSRTKNSAK 1373 +LGL + + + + Sbjct: 1137 SLGLDVKVMDEQDNEIEM 1154 >gi|239636941|ref|ZP_04677939.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus warneri L37603] gi|239597489|gb|EEQ79988.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus warneri L37603] Length = 1183 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 445/964 (46%), Positives = 600/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SYD FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFL----------KEGLLEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDSEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + L+EI + Sbjct: 273 YKANKKLHLKHRLFNQKLAEPIVNSETGEIVVEEGTVLDRRKLDEIMD--------VLEA 324 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N+ + V D+ + + + + D + + Sbjct: 325 NANSEVFELEGTVIDEPVEIQSIKVYV----------------------PNDDEGRTTTV 362 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 363 IGNAL--------PDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D DS+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTNAITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI A G VE V++ I++R VE D +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITANHRGRVEHVESNEILVRRLVEQDGQEYEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V GD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVATGDIVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+DE GI+ VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDERGIVYVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 167/446 (37%), Positives = 226/446 (50%), Gaps = 72/446 (16%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEILCGQNAVSGPKG 1001 K++ S+ E+ E ARD + R+I + G G Sbjct: 782 KDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDERGIVYVGAEVKDGDIL 841 Query: 1002 FKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQ 1061 K T ++ R F + +V+ + K+ + Sbjct: 842 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVKVFNRE 895 Query: 1062 WGDD-MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 GDD + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI Sbjct: 896 EGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDI 955 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 +LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 956 MLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------------ 1003 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGL 1240 + A + G +++LYDG Sbjct: 1004 -------------IEEAGMARDG-----------------------------KTVLYDGR 1021 Query: 1241 TGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVW 1300 TGEPFD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1022 TGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1081 Query: 1301 CIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLS 1360 ++AYGAAY LQE+LT KSDD VGR + YESIV G + PESF VL+KE+Q+LGL Sbjct: 1082 ALEAYGAAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGLD 1141 Query: 1361 IDLENSRTKNSAKMEEIPDFNKCELK 1386 + + + + M +I D + E K Sbjct: 1142 VKVMDEQDNEIE-MADIEDEDVTERK 1166 >gi|307069542|ref|YP_003878019.1| putative DNA-directed RNA polymerase subunit beta [Candidatus Zinderia insecticola CARI] gi|306482802|gb|ADM89673.1| putative DNA-directed RNA polymerase subunit beta [Candidatus Zinderia insecticola CARI] Length = 1291 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 447/1360 (32%), Positives = 744/1360 (54%), Gaps = 89/1360 (6%) Query: 13 VRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAA 72 +RK F K IP+LI Q SY F+ R N G+Q +FPI + + Sbjct: 7 IRKSFSKIINNHKIPNLINHQIDSYKFFIQKKNKSFYRKNLGIQKEISKIFPIFSKNKNI 66 Query: 73 MLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 L F +Y+ PK + C +DLTY+ +++ L+L+ I I E I + Sbjct: 67 SLYFKNYKIIKPKNNKKKCFEKDLTYSYNIELNLKLVN-----------INKINEIKISI 115 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 G++PL+ K+ +F+ G++R++V Q+ R GI + ++K + +L+ + +Y +I +G + Sbjct: 116 GEIPLILKNASFIFNGMERVIVPQISRKFGIFYINEKKKNNLN-EYIYKVKINILKGYKI 174 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAA 252 IEFD + + RI++++K+P+ +L + ++I++ FY + Sbjct: 175 IIEFDMNNNLFFRINKKKKIPLIILFKSLNISKKKIINFFYNNYKVYIKNKKIKIKFDFK 234 Query: 253 DLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDI 312 + K +L + + +++ KK+ +K + K +K+ I++ L +A DI Sbjct: 235 N-FYNYKFDYNLYNKKG-KLLLKKNKKINKKKIKKIFNKNIKYFYISNKHLIKKIIANDI 292 Query: 313 VNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKD 372 + + +I++K ++ + + I I I + N N YI N L N + + Sbjct: 293 Y--INNNLLFKKYTIINKKKIKILKKNNIYKIFIFNLGEKNKNNYIFNILKKYNNYSKFE 350 Query: 373 ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIR 432 + IY+ + S + +F +FF K + N + Sbjct: 351 SKYLIYKYLNFKGNSKKKIDF-LFYNIFFKIRKKNNFIYKNSIKNK------------LS 397 Query: 433 KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492 + ++ IIK L+ L+N + D+++L ++V+++ + + L + ++I E+++ Sbjct: 398 TKYLLNIIKKLIILKNKNKKLKDLNSLYFKKVKNLEYLFNEIFFLSMEIFYKNIIEKLNF 457 Query: 493 VDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARA 552 ++ + + + +S++ +FF S+ SQ + N LS ITH RRL++LG GG+ + Sbjct: 458 MEFNKNYKLNKLEYLNTLSSLKDFFSVSEFSQFLDSTNPLSEITHKRRLTSLGPGGLTKK 517 Query: 553 RAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI-ETPYRKVCDGKVT 611 A E RDVH THYGRICP ET EG +IGLV++L + +++ + ++PY+KV +T Sbjct: 518 TANFESRDVHYTHYGRICPIETPEGPHIGLVNNLALYCKIDRKSRLLKSPYKKVKKSNLT 577 Query: 612 NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQV 671 N + YL+ E+ YIAQ+N L ++ + R G E V ++KI +ID +P Q+ Sbjct: 578 NKIFYLNNFNEDKYYIAQSNI-LIKNKKIINNFISTRKYGNEKFVNKKKIKYIDINPNQI 636 Query: 672 VSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR 731 VSIA+SLIPFLE++D+NR LM NMQRQ+VP + +E PFVGTG+E V I +K Sbjct: 637 VSIASSLIPFLEHNDANRALMAANMQRQSVPCINSEFPFVGTGIEKNVVFDLNYIIKSKT 696 Query: 732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRN 791 GIV+ +D+ I+I + ++ Y+L KF+R+NQNT +NQ+ +V + D +++N Sbjct: 697 NGIVKYIDSKYILILNE-------NLKIEKYKLDKFKRTNQNTLINQKSIVNINDYIKKN 749 Query: 792 DIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMA 851 +IAD + G+LALG+N+L+AFM GYNFEDS++ISE+++ + +TSIHI E ++ Sbjct: 750 QVIADSSCSKFGELALGKNVLIAFMTLKGYNFEDSIIISEKLLKNNKYTSIHILELKIPL 809 Query: 852 RDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEK 911 + + G E IT++I N+ + + N+D+ GII +G + PGDILV K P Sbjct: 810 KFNEFGEEIITKNIKNIKKNKISNLDKLGIIKIGKYILPGDILVSKKLPINN-------- 861 Query: 912 LLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDK 971 F K +TS + P+GV G V+D++IF + N + ++ I Sbjct: 862 -----FLNKKNKFINTSYKNPNGVYGKVIDIKIFKNKKNENNYNEYNNIKKIIFKKKNIY 916 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 + IY + L +++ + + F Sbjct: 917 SFLLFFKKKIIYKYKLFFL---------------------YKNKFFFIKMFNFIKIFFLN 955 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 ++ + ++K + + ++ + F+N E + +P G+ +++K+ + + +Q GDKM+ Sbjct: 956 KKILLNIKNKIKKINKLIYNSFENFKENL-----LPFGISKIIKIKILTIKKLQPGDKMS 1010 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG+VS+ILP ++P++ DGT +DI+LNPLGVPSRMNVGQ E HLG A GLG++ Sbjct: 1011 GRHGNKGVVSKILPIRNVPYMNDGTYIDIILNPLGVPSRMNVGQALEVHLGLASWGLGRR 1070 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I ++ K +++ +++FL K+ S + I + D + + + K G+P STP+F Sbjct: 1071 INNIF--KKNPKNLNKIKNFLYKIYNKPSEFKFIKNISDKNFYNLIKVLKKGIPFSTPIF 1128 Query: 1212 DGADEEAINSMLRMADL----------DESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 + E+ IN ML +A + Q LY+G T + FD+ +TVGY+Y LKLNH Sbjct: 1129 ESIKEKYINKMLLLAFPEKIRKKLKMSSDRKQLTLYNGKTNKSFDKKITVGYMYYLKLNH 1188 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V+DK+++RSTG YSLVTQQPL GKSN GGQR GEMEVW ++AYGA+Y LQE+LT+KSDD Sbjct: 1189 LVNDKIHSRSTGPYSLVTQQPLRGKSNIGGQRFGEMEVWALEAYGASYNLQEILTVKSDD 1248 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361 ++GR +Y+++V G + F PESFNVL+KE+ L L + Sbjct: 1249 ILGRNEIYKNLVKGINNFYPNLPESFNVLLKELNGLCLDL 1288 >gi|258446337|ref|ZP_05694495.1| RNA polymerase subunit beta [Staphylococcus aureus A6300] gi|257854931|gb|EEV77876.1| RNA polymerase subunit beta [Staphylococcus aureus A6300] Length = 1183 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 442/964 (45%), Positives = 598/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +T+ RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTNKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 513 bits (1320), Expect = e-142, Method: Composition-based stats. Identities = 247/1145 (21%), Positives = 418/1145 (36%), Gaps = 104/1145 (9%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL++VGR K N Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 419 RLNLDTPDDVRHI-RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +L+L + + +I+V+ + + + E+ + + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 +E + D + + + F S++ + S Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRT----------TTVIGNAFPDSEVKCITPADIIASMSYF 387 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 LS +G +R V + + + S+ + Sbjct: 388 FNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTESITPQQL 447 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 I R V + + + + + L E + Sbjct: 448 I--NIRPVIASIK----EFFGSSQLSQFMDQANPLAELTNKRRLSALGPGGLTRERAQME 501 Query: 658 REKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + + + I + + S + + + + ++ Sbjct: 502 VRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTHAITDQID 561 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 + A + +VA+ + + + + K + + Sbjct: 562 YLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMAKEKMDYMDVSPKQ 616 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 + +D ++ A+ A G + + ++ Sbjct: 617 VVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAAITAK 676 Query: 837 DVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 H+E E++ R G + ++ I+ VG V Sbjct: 677 HRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCYNQRPIVAVGDVVE 736 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 +IL + M ++ + D + +S +V ++ Sbjct: 737 YNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MSERLVKDDVYTSIH 790 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 I++ E + E + RD + +N+ R + G G K T Sbjct: 791 IEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVKDGDILVGKVTPKG 849 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD-MPP 1068 ++ R F + +V+ + K+ + GDD + P Sbjct: 850 VTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVKVFNREEGDDTLSP 903 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLGVP Sbjct: 904 GVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVP 963 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDY 1188 SRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 964 SRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST-------------------- 1003 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 + A + G +++LYDG TGEPFD Sbjct: 1004 -----IEEAGMARDG-----------------------------KTVLYDGRTGEPFDNR 1029 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA Sbjct: 1030 ISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1089 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 Y LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q+LGL + + + + Sbjct: 1090 YTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDEQD 1149 Query: 1369 KNSAK 1373 Sbjct: 1150 NEIEM 1154 >gi|294850318|ref|ZP_06791052.1| DNA-directed RNA polymerase [Staphylococcus aureus A9754] gi|294822830|gb|EFG39265.1| DNA-directed RNA polymerase [Staphylococcus aureus A9754] Length = 1183 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 442/964 (45%), Positives = 598/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLS+ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSKFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 513 bits (1320), Expect = e-142, Method: Composition-based stats. Identities = 247/1145 (21%), Positives = 417/1145 (36%), Gaps = 104/1145 (9%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL++VGR K N Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 419 RLNLDTPDDVRHI-RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +L+L + + +I+V+ + + + E+ + + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 +E + D + + + F S++ + S Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRT----------TTVIGNAFPDSEVKCITPADIIASMSYF 387 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 LS +G +R V + + + S+ + Sbjct: 388 FNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTESITPQQL 447 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 I R V + + + + L E + Sbjct: 448 I--NIRPVIASIK----EFFGSSQLSKFMDQANPLAELTHKRRLSALGPGGLTRERAQME 501 Query: 658 REKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + + + I + + S + + + + ++ Sbjct: 502 VRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTHAITDQID 561 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 + A + +VA+ + + + + K + + Sbjct: 562 YLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMAKEKMDYMDVSPKQ 616 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 + +D ++ A+ A G + + ++ Sbjct: 617 VVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAAITAK 676 Query: 837 DVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 H+E E++ R G + ++ I+ VG V Sbjct: 677 HRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCYNQRPIVAVGDVVE 736 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 +IL + M ++ + D + +S +V ++ Sbjct: 737 YNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MSERLVKDDVYTSIH 790 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 I++ E + E + RD + +N+ R + G G K T Sbjct: 791 IEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVKDGDILVGKVTPKG 849 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD-MPP 1068 ++ R F + +V+ + K+ + GDD + P Sbjct: 850 VTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVKVFNREEGDDTLSP 903 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLGVP Sbjct: 904 GVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVP 963 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDY 1188 SRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 964 SRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST-------------------- 1003 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 + A + G +++LYDG TGEPFD Sbjct: 1004 -----IEEAGMARDG-----------------------------KTVLYDGRTGEPFDNR 1029 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA Sbjct: 1030 ISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1089 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 Y LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q+LGL + + + + Sbjct: 1090 YTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDEQD 1149 Query: 1369 KNSAK 1373 Sbjct: 1150 NEIEM 1154 >gi|227552789|ref|ZP_03982838.1| DNA-directed RNA polymerase subunit beta (RNA polymerase subunit beta) [Enterococcus faecium TX1330] gi|227178032|gb|EEI59004.1| DNA-directed RNA polymerase subunit beta (RNA polymerase subunit beta) [Enterococcus faecium TX1330] Length = 1208 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 54 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + +V P D Sbjct: 329 FIDNGLNSVTYYPSEDGVVTDPMTVQVIKVFSPKDP------------------------ 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 365 --EREVNVIGNGYPEAAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 543 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 603 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEYVDASEIRVRRDNGALDK-------YDVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 176/504 (34%), Positives = 236/504 (46%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 778 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 779 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 830 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 831 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 889 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 890 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 944 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 945 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 994 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 995 ------------------SDEDVWETVREAGMASDAKTVLYDG----------------- 1019 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1020 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1070 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1071 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1130 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + Sbjct: 1131 VKELQSLGLDMRVLDIEETEIELR 1154 >gi|81429387|ref|YP_396388.1| DNA-directed RNA polymerase subunit beta [Lactobacillus sakei subsp. sakei 23K] gi|88909140|sp|Q38UQ2|RPOB_LACSS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|78611030|emb|CAI56083.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus sakei subsp. sakei 23K] Length = 1197 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 416/963 (43%), Positives = 573/963 (59%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++++P+LIE+Q SY FL +EGL+ F Sbjct: 1 MAGHLVNYGKHRTRRSYARIKEVLELPNLIEIQSNSYQWFL----------DEGLREMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y+ PK+ V++ D Y+ PL +TL+L Sbjct: 51 DIMPIDDFAGNLSLEFVDYQLLEPKYTVEEARQHDANYSAPLHVTLKLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG++F+ + + + Y Sbjct: 102 ETGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYFNSAIDK---NSRTTY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KDI +VRIDR RK+P++ + ALG S+ EI+ Sbjct: 159 GTTVIPNRGAWLEFETDAKDIAYVRIDRTRKIPMSVLVRALGYGSDQEIIDILGDNDSLM 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE +S + L K + +G Sbjct: 219 LTLEKDI-HKNTDDSRTEEALKDVYERLRPGEPKTADSSRSLLFARFFDAKRYDLASVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L G +AE + + +TGE+ V+D + ++ + Sbjct: 278 YKINKKLSLKTRLLGQTLAETLADPDTGEVIAAKDTVVDRQVMDALAPYL---------- 327 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 D +D Y+ G + + + + DK Sbjct: 328 ------------------DCEDFKAVTYQPSDEGVLPEPMTLQVIKVYSQKTPDKE---- 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N V+H+ DIIA + +L+ G G+ DDID+LGNRR+RSVGE+ Sbjct: 366 -----INLIGNGHIDAKVKHVIPADIIASMNYFFNLQEGLGSTDDIDHLGNRRIRSVGEL 420 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 421 LQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 480 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A Sbjct: 481 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA 540 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 VN YGFIETPYR+V VT+ + YL+A EE+N IAQANS L++DGSF + V R Sbjct: 541 VVNRYGFIETPYRRVSWDTHDVTDKIDYLTADEEDNYVIAQANSPLNDDGSFVDNTVLAR 600 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 + I +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 601 YKDDNIETSIDKLDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVNPHA 660 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME A SG A++A+ AG VE VDA I +R + S +D Y LMKF+ Sbjct: 661 PLVGTGMEYKAAHDSGIALLAQHAGTVEYVDAKVIRVRRED-------SSLDTYELMKFR 713 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V GD V ++IIADGP+ + G+LALG+N L+AFM W+ YN+ED+++ Sbjct: 714 RSNAGKNYNQRPIVAKGDHVDVDEIIADGPAMEKGELALGQNPLIAFMTWNMYNYEDAIV 773 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V ED++TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GI+ VGAEV Sbjct: 774 LSERLVKEDLYTSIHIEEYESEARDTKLGPEEITREIPNVGEDSLKDLDEFGIVRVGAEV 833 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSL+VP G G + DV+IF R Sbjct: 834 KDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLKVPHGGGGIIQDVKIFTRE 893 Query: 949 GID 951 D Sbjct: 894 AGD 896 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 260/1078 (24%), Positives = 399/1078 (37%), Gaps = 170/1078 (15%) Query: 339 SEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNF 398 S+ I IL + ++ + ++AL D+Y +RPG+ T + S+ Sbjct: 203 SDQEIIDILGDNDSLMLTLEKDIHKNTDDSRTEEALKDVYERLRPGEPKTADSSRSLLFA 262 Query: 399 LFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDID- 457 FFD+ +YDL++VGR K+N +L+L T + + + ++ ++ +D Sbjct: 263 RFFDAKRYDLASVGRYKINKKLSLKTRLLGQTLAETLADPDTGEVIAAKDTVVDRQVMDA 322 Query: 458 -------------NLGNRRVRSVGEMLKNQY-----RLGLLRMERSIKERISSVDIDSVM 499 + E + Q + + I + V+ Sbjct: 323 LAPYLDCEDFKAVTYQPSDEGVLPEPMTLQVIKVYSQKTPDKEINLIGNGHIDAKVKHVI 382 Query: 500 PQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR----ARAG 555 P D+I + + E S+ + S + +G + R + Sbjct: 383 PADIIASMNYFFNLQEGLGSTDDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMSI 442 Query: 556 VEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK----------- 604 + V P I P S G + N G + R Sbjct: 443 QDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRD 502 Query: 605 -----VCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP-- 657 V D T+ E I NS + Sbjct: 503 RAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYAVVNRYGFIETPYRRVSWDTHDV 562 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 +KID++ A + IA + P NDD + V + + + + + Sbjct: 563 TDKIDYLTADEEDNYVIAQANSPL--NDDGSFVDNTVLARYKDDNIETSIDKLDYMDVSP 620 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 A+ +E D+ R ++ + QR Sbjct: 621 KQV----VAVATACIPFLENDDSNRALMGAN------------------MQRQAVPLVNP 658 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 PLV G E + A + + G + + V Sbjct: 659 HAPLVGTGMEYK----------------AAHDSGIALLAQHAGT-----VEYVDAKVIRV 697 Query: 838 VFTSIHIEEFEVM-ARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 ++ +E+M R + G R I + ++D II G + G++ +G Sbjct: 698 RREDSSLDTYELMKFRRSNAGKNYNQRPIVAKGD----HVDVDEIIADGPAMEKGELALG 753 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 E A+ + + ++ S + + R E Sbjct: 754 -------QNPLIAFMTWNMYNYEDAIVLSERLVKEDLYTSIHIEEYESEARDTKLGPEEI 806 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEY 1016 E +D DE I+ + +IL G+ G L + E Sbjct: 807 TREIPNVGEDSLKDL-DEFGIVRVGAEVKDGDILVGKVTPKGVTELSAEERLLHAIFGEK 865 Query: 1017 PRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKV 1076 R +V+ + + KI + GD++ PGV +V+V Sbjct: 866 AR-----------EVRDTSLKVPHGGGGIIQDV------KIFTREAGDELSPGVNMMVRV 908 Query: 1077 FVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQI 1136 ++ KR IQ GDKMAGRHGNKG VS ++P EDMP+ DGTPVDI+L+P+GVPSRMN+GQ+ Sbjct: 909 YITQKRKIQVGDKMAGRHGNKGTVSIVVPEEDMPYTPDGTPVDILLSPMGVPSRMNIGQV 968 Query: 1137 FETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRV 1196 E HLG A LG + + + D + D+ Sbjct: 969 LELHLGMAARNLGIHVATPVFDGAQDKDLW------------------------------ 998 Query: 1197 AEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYM 1256 D E ++ G+SILYDG TGEPFD V+VG +Y Sbjct: 999 ---------------DAVREA---------NMPSDGKSILYDGRTGEPFDTRVSVGVMYY 1034 Query: 1257 LKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLT 1316 +KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT Sbjct: 1035 MKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILT 1094 Query: 1317 IKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 KSDDVVGR + YE+IV G + G PESF VLVKE+Q+LGL + + + + Sbjct: 1095 YKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLDMKVLDIDNQEIELR 1152 >gi|308180004|ref|YP_003924132.1| DNA-directed RNA polymerase subunit beta [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045495|gb|ADN98038.1| DNA-directed RNA polymerase subunit beta [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1204 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 586/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y+ PK+ V++ D Y+ PL +TLRL Sbjct: 54 DIMPIDDFAGKLSLEFVDYQLLEPKYTVEEAREHDANYSAPLHVTLRLT---------NH 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F+ + + +G+ Y Sbjct: 105 ETGEIKSQDVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFNEELDK---NGRPSY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+K++ +VRIDR RK+P+T + ALG S++ I+ Sbjct: 162 GTTVIPNRGAWLELETDAKNVSYVRIDRTRKIPLTELVRALGYGSDDDIIDMLGETDSLM 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + D V + + GE +S + L + K Sbjct: 222 LTLEKD-VHKNTDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDFAPVGR 280 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 V L +AE + + +TGE+ + VID+ + ++ RD Sbjct: 281 YKVNKKLSMKTRLMDQTLAETLADPDTGEVIAQKDTVIDKNVMAKLSPYLERDDFKTVTY 340 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + ++ A + N +V L + +V D Sbjct: 341 TPSDEAVVTNPMV-----------LQVVKVYSQNDP------------------------ 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N + +HI DIIA I +L+ G G+ DDID+LGNRR+RSVGE+ Sbjct: 366 --EKVVNVIGNGNIDLKFKHIVPADIIASINYFFNLQEGLGSTDDIDHLGNRRIRSVGEL 423 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 424 LQNQFRIGLSRMERVVRERMSIQDAATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 483 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+A Sbjct: 484 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA 543 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN YGFIETPYR+V KVT+ + YL+A EE+ IAQANS L++DGSF E+ V R Sbjct: 544 KVNRYGFIETPYRRVDWTTHKVTDKIDYLAADEEDQFVIAQANSPLNDDGSFVEDTVLAR 603 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + P E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPLL A Sbjct: 604 NKEENLETPIENVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLDPHA 663 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P +GTG+E A SG A++ + G VE VDA + +R +G LD Y+LMKF+ Sbjct: 664 PLIGTGIEYKAAHDSGIALICRHEGTVEYVDAREVRVRRDDGSLD-------TYKLMKFR 716 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+VKVGD V ++++ADGP+ + G+LALG+N LVAFM W+GYNFED+++ Sbjct: 717 RSNGGKNYNQRPIVKVGDHVDNDEVLADGPAMEGGELALGQNPLVAFMTWNGYNFEDAII 776 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 I+ER+V EDV+TSIHIEE+E ARDTKLGPEE+TR+IPNV E+ LKN+DE GII +GAEV Sbjct: 777 INERLVREDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALKNLDEDGIIRIGAEV 836 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R Sbjct: 837 KDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRE 896 Query: 949 GID 951 D Sbjct: 897 NGD 899 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 267/1108 (24%), Positives = 410/1108 (37%), Gaps = 168/1108 (15%) Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 + D N I + E + S+ I +L ++ + Sbjct: 175 LETDAKNVSYVRIDRTRKIPLTELVRALGYGSDDDIIDMLGETDSLMLTLEKDVHKNTDD 234 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 +++L DIY +RPG+ T + S+ FFD +YD + VGR K+N +L++ T Sbjct: 235 SRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDFAPVGRYKVNKKLSMKTRLM 294 Query: 428 VRHIR----KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 + + D +I + + L ++V ++ + + Sbjct: 295 DQTLAETLADPDTGEVIAQKDTVIDKNVMAKLSPYLERDDFKTVTYTPSDEAVVTNPMVL 354 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT----- 538 + +K + V N + + ++ L Sbjct: 355 QVVKVYSQNDPEKVVNVIGNGNIDLKFKHIVPADIIASINYFFNLQEGLGSTDDIDHLGN 414 Query: 539 RRLSALGQ-------GGVARARAGVEMR-------DVHPTHYGRICPAETSEGHNIGLVS 584 RR+ ++G+ G++R V R V P I P S G Sbjct: 415 RRIRSVGELLQNQFRIGLSRMERVVRERMSIQDAATVTPQQLINIRPVVASIKEFFGSSQ 474 Query: 585 SLTSFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLSAMEEENRYIA 628 + N G + R V D T+ E I Sbjct: 475 LSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIG 534 Query: 629 QANS--SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDD 686 NS S + + R +KID++ A + IA + P NDD Sbjct: 535 LINSLSSYAKVNRYGFIETPYRRVDWTTHKVTDKIDYLAADEEDQFVIAQANSPL--NDD 592 Query: 687 SNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR 746 + V + + L + A+ +E D+ R ++ Sbjct: 593 GSFVEDTVLARNKEENLETPIENVDYMDVSPKQV----VAVATACIPFLENDDSNRALMG 648 Query: 747 SVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLA 806 + QR PL+ G + Sbjct: 649 AN------------------MQRQAVPLLDPHAPLIGTGI-----------------EYK 673 Query: 807 LGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIP 866 + +A + H E R+ +D + + R + G R I Sbjct: 674 AAHDSGIALICRHEGTVEYVDAREVRVRRDDGSLDTYKL---MKFRRSNGGKNYNQRPIV 730 Query: 867 NVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRD 926 V + ++D ++ G + G++ +G E A+ + + Sbjct: 731 KVGD----HVDNDEVLADGPAMEGGELALG-------QNPLVAFMTWNGYNFEDAIIINE 779 Query: 927 TSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRL 986 +R S + + R E E ++ DE I+ + Sbjct: 780 RLVREDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALKNL-DEDGIIRIGAEVKD 838 Query: 987 MEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSK 1046 +IL G+ G L + E R +V+ + Sbjct: 839 GDILVGKVTPKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGII 887 Query: 1047 SILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPC 1106 + KI + GD++ PGV +V+V++A KR IQ GDKMAGRHGNKG VS ++P Sbjct: 888 QDV------KIFTRENGDELSPGVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSIVVPE 941 Query: 1107 EDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDIS 1166 EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG + + + D + DI Sbjct: 942 EDMPYMPDGTPIDIMLSPMGVPSRMNIGQVLELHLGMAARKLGIHMATPVFDGAQDTDIW 1001 Query: 1167 PLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA 1226 EAI A Sbjct: 1002 --------------------------------------------------EAIRE----A 1007 Query: 1227 DLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGK 1286 +D +SI+YDG TGEPFD+ V VG ++ +KL+HMV DK++ARS G YSLVTQQPLGGK Sbjct: 1008 GVDSDAKSIVYDGRTGEPFDKRVAVGVMHYMKLSHMVDDKIHARSIGPYSLVTQQPLGGK 1067 Query: 1287 SNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPES 1346 + GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PES Sbjct: 1068 AQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPES 1127 Query: 1347 FNVLVKEMQALGLSIDLENSRTKNSAKM 1374 F VLVKE+QALGL + + +S K Sbjct: 1128 FRVLVKELQALGLDMKVLDSEDKEIELR 1155 >gi|300767813|ref|ZP_07077723.1| DNA-directed RNA polymerase subunit beta [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494798|gb|EFK29956.1| DNA-directed RNA polymerase subunit beta [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 1204 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 586/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y+ PK+ V++ D Y+ PL +TLRL Sbjct: 54 DIMPIDDFAGKLSLEFVDYQLLEPKYTVEEAREHDANYSAPLHVTLRLT---------NH 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F+ + + +G+ Y Sbjct: 105 ETGEIKSQDVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFNEELDK---NGRPSY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+K++ +VRIDR RK+P+T + ALG S++ I+ Sbjct: 162 GTTVIPNRGAWLELETDAKNVSYVRIDRTRKIPLTELVRALGYGSDDDIIDMLGETDSLM 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + D V + + GE +S + L + K Sbjct: 222 LTLEKD-VHKNTDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDFAPVGR 280 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 V L +AE + + +TGE+ + VID+ + ++ RD Sbjct: 281 YKVNKKLSMKTRLMDQTLAETLADPDTGEVIAQKDTVIDKNVMAKLSPYLERDDFKTVTY 340 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + ++ A + N +V L + +V D Sbjct: 341 TPSDEAVVTNPMV-----------LQVVKVYSQNDP------------------------ 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N + +HI DIIA I +L+ G G+ DDID+LGNRR+RSVGE+ Sbjct: 366 --EKVVNVIGNGNIDLKFKHIVPADIIASINYFFNLQEGLGSTDDIDHLGNRRIRSVGEL 423 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 424 LQNQFRIGLSRMERVVRERMSIQDAATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 483 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+A Sbjct: 484 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA 543 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN YGFIETPYR+V KVT+ + YL+A EE+ IAQANS L++DGSF E+ V R Sbjct: 544 KVNRYGFIETPYRRVDWTTHKVTDKIDYLAADEEDQFVIAQANSPLNDDGSFVEDTVLAR 603 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + P E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPLL A Sbjct: 604 NKEENLETPIENVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLDPHA 663 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P +GTG+E A SG A++ + G VE VDA + +R +G LD Y+LMKF+ Sbjct: 664 PLIGTGIEYKAAHDSGIALICRHEGTVEYVDAREVRVRRDDGSLD-------TYKLMKFR 716 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+VKVGD V ++++ADGP+ + G+LALG+N LVAFM W+GYNFED+++ Sbjct: 717 RSNGGKNYNQRPIVKVGDHVDNDEVLADGPAMEGGELALGQNPLVAFMTWNGYNFEDAII 776 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 I+ER+V EDV+TSIHIEE+E ARDTKLGPEE+TR+IPNV E+ LKN+DE GII +GAEV Sbjct: 777 INERLVREDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALKNLDEDGIIRIGAEV 836 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R Sbjct: 837 KDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRE 896 Query: 949 GID 951 D Sbjct: 897 NGD 899 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 267/1108 (24%), Positives = 410/1108 (37%), Gaps = 168/1108 (15%) Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 + D N I + E + S+ I +L ++ + Sbjct: 175 LETDAKNVSYVRIDRTRKIPLTELVRALGYGSDDDIIDMLGETDSLMLTLEKDVHKNTDD 234 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 +++L DIY +RPG+ T + S+ FFD +YD + VGR K+N +L++ T Sbjct: 235 SRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDFAPVGRYKVNKKLSMKTRLM 294 Query: 428 VRHIR----KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 + + D +I + + L ++V ++ + + Sbjct: 295 DQTLAETLADPDTGEVIAQKDTVIDKNVMAKLSPYLERDDFKTVTYTPSDEAVVTNPMVL 354 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT----- 538 + +K + V N + + ++ L Sbjct: 355 QVVKVYSQNDPEKVVNVIGNGNIDLKFKHIVPADIIASINYFFNLQEGLGSTDDIDHLGN 414 Query: 539 RRLSALGQ-------GGVARARAGVEMR-------DVHPTHYGRICPAETSEGHNIGLVS 584 RR+ ++G+ G++R V R V P I P S G Sbjct: 415 RRIRSVGELLQNQFRIGLSRMERVVRERMSIQDAATVTPQQLINIRPVVASIKEFFGSSQ 474 Query: 585 SLTSFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLSAMEEENRYIA 628 + N G + R V D T+ E I Sbjct: 475 LSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIG 534 Query: 629 QANS--SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDD 686 NS S + + R +KID++ A + IA + P NDD Sbjct: 535 LINSLSSYAKVNRYGFIETPYRRVDWTTHKVTDKIDYLAADEEDQFVIAQANSPL--NDD 592 Query: 687 SNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR 746 + V + + L + A+ +E D+ R ++ Sbjct: 593 GSFVEDTVLARNKEENLETPIENVDYMDVSPKQV----VAVATACIPFLENDDSNRALMG 648 Query: 747 SVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLA 806 + QR PL+ G + Sbjct: 649 AN------------------MQRQAVPLLDPHAPLIGTGI-----------------EYK 673 Query: 807 LGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIP 866 + +A + H E R+ +D + + R + G R I Sbjct: 674 AAHDSGIALICRHEGTVEYVDAREVRVRRDDGSLDTYKL---MKFRRSNGGKNYNQRPIV 730 Query: 867 NVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRD 926 V + ++D ++ G + G++ +G E A+ + + Sbjct: 731 KVGD----HVDNDEVLADGPAMEGGELALG-------QNPLVAFMTWNGYNFEDAIIINE 779 Query: 927 TSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRL 986 +R S + + R E E ++ DE I+ + Sbjct: 780 RLVREDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALKNL-DEDGIIRIGAEVKD 838 Query: 987 MEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSK 1046 +IL G+ G L + E R +V+ + Sbjct: 839 GDILVGKVTPKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGII 887 Query: 1047 SILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPC 1106 + KI + GD++ PGV +V+V++A KR IQ GDKMAGRHGNKG VS ++P Sbjct: 888 QDV------KIFTRENGDELSPGVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSIVVPE 941 Query: 1107 EDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDIS 1166 EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG + + + D + DI Sbjct: 942 EDMPYMPDGTPIDIMLSPMGVPSRMNIGQVLELHLGMAARKLGIHMATPVFDGAQDTDIW 1001 Query: 1167 PLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA 1226 EAI A Sbjct: 1002 --------------------------------------------------EAIRE----A 1007 Query: 1227 DLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGK 1286 +D +SI+YDG TGEPFD+ V VG ++ +KL+HMV DK++ARS G YSLVTQQPLGGK Sbjct: 1008 GVDSDAKSIVYDGRTGEPFDKRVAVGVMHYMKLSHMVDDKIHARSIGPYSLVTQQPLGGK 1067 Query: 1287 SNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPES 1346 + GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PES Sbjct: 1068 AQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPES 1127 Query: 1347 FNVLVKEMQALGLSIDLENSRTKNSAKM 1374 F VLVKE+QALGL + + +S K Sbjct: 1128 FRVLVKELQALGLDMKVLDSEDKEIELR 1155 >gi|15923532|ref|NP_371066.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus Mu50] gi|255005336|ref|ZP_05143937.2| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus Mu50-omega] gi|41018107|sp|Q932F8|RPOB_STAAM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|14246310|dbj|BAB56704.1| RNA polymerase beta chain [Staphylococcus aureus subsp. aureus Mu50] Length = 1183 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 442/964 (45%), Positives = 598/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +T+ RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTYKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 250/1158 (21%), Positives = 427/1158 (36%), Gaps = 130/1158 (11%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL++VGR K N Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 419 RLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +L+L + + E ++ +L + + N + G + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 471 LKNQYRLGLLRME----RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLE 526 + + +++ + + I +++++ FF Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRTTTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYT 397 Query: 527 EHVNSLSRITHTRRLSALGQG--GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + ++ L RRL ++G+ R R V R+ +T L++ Sbjct: 398 DDIDHLG----NRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTESITPQQLIN 449 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 A + + + + ++ Y L Sbjct: 450 IRPVIASIKEFFGSSQLSQFMDQANPLAELTY---------------------KRRLSAL 488 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPL 703 E + + + + I + + S + Sbjct: 489 GPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRK 548 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 + + + ++ + A + +VA+ + + + + Sbjct: 549 VDLDTHAITDQIDYLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMA 603 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 K + + + +D ++ A+ A G Sbjct: 604 KEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEH 663 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNI 876 + + ++ H+E E++ R G + Sbjct: 664 VAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCY 723 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 ++ I+ VG V +IL + M ++ + D + +S Sbjct: 724 NQRPIVAVGDVVEYNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MS 777 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 +V ++ I++ E + E + RD + +N+ R + G Sbjct: 778 ERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVK 836 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 G K T ++ R F + +V+ + K Sbjct: 837 DGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVK 890 Query: 1057 IEKIQWGDD-MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 + + GDD + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG Sbjct: 891 VFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDG 950 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 P+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 951 RPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------- 1003 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + A + G +++ Sbjct: 1004 ------------------IEEAGMARDG-----------------------------KTV 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1017 LYDGRTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1076 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q Sbjct: 1077 EMEVWALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQ 1136 Query: 1356 ALGLSIDLENSRTKNSAK 1373 +LGL + + + + Sbjct: 1137 SLGLDVKVMDEQDNEIEM 1154 >gi|329729422|gb|EGG65825.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus epidermidis VCU144] Length = 1183 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 441/964 (45%), Positives = 600/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SYD FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYVRISEVLELPNLIEIQTKSYDWFL----------KEGLLEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG ++ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSTDQEIVDLLGDSEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI ++ G V+D + L+EI Sbjct: 273 YKANKKLHLKHRLFNQKLAEPIVNSETGEIVVDEGTVLDRRKLDEIMDVLET-------- 324 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N+ + V D+ + + + + D + + Sbjct: 325 NANSEVFELEGSVIDEPVEIQSIKVYV----------------------PNDEEGRTTTV 362 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G +V+ I DI+A + +L NG G DDID+LGNRR+RSVGE+ Sbjct: 363 IGNAL--------PDSEVKCITPADIVASMSYFFNLLNGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D DS+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTNSITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI A G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITANHRGRVEHVESNEILVRRLVEENGTEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V +GD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVSIGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 483 bits (1242), Expect = e-133, Method: Composition-based stats. Identities = 162/440 (36%), Positives = 223/440 (50%), Gaps = 60/440 (13%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS---GPKGFKKSTVL 1008 K++ S+ E+ E ARD + R+I + L + K +L Sbjct: 782 KDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAEVKDGDIL 841 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR-FKNKIEKIQWGDD-M 1066 + + + + ++ K+ + GDD + Sbjct: 842 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTL 901 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLG Sbjct: 902 SPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLG 961 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 962 VPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------------------ 1003 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + A + G +++LYDG TGEPFD Sbjct: 1004 -------IEEAGMARDG-----------------------------KTVLYDGRTGEPFD 1027 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1028 NRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1087 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQE+LT KSDD VGR + YESIV G + PESF VL+KE+Q+LGL + + + Sbjct: 1088 AAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDE 1147 Query: 1367 RTKNSAKMEEIPDFNKCELK 1386 M ++ D + E K Sbjct: 1148 HDNEIE-MADVDDEDAAERK 1166 >gi|329727935|gb|EGG64384.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus 21172] Length = 1183 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 442/964 (45%), Positives = 597/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +T RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTDKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 513 bits (1320), Expect = e-142, Method: Composition-based stats. Identities = 248/1145 (21%), Positives = 418/1145 (36%), Gaps = 104/1145 (9%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL++VGR K N Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 419 RLNLDTPDDVRHI-RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +L+L + + +I+V+ + + + E+ + + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 +E + D + + + F S++ + S Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRT----------TTVIGNAFPDSEVKCITPADIIASMSYF 387 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 LS +G +R V + + + S+ + Sbjct: 388 FNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTESITPQQL 447 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 I R V + + + + D L E + Sbjct: 448 I--NIRPVIASIK----EFFGSSQLSQFMDQANPLAELTDKRRLSALGPGGLTRERAQME 501 Query: 658 REKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + + + I + + S + + + + ++ Sbjct: 502 VRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTHAITDQID 561 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 + A + +VA+ + + + + K + + Sbjct: 562 YLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMAKEKMDYMDVSPKQ 616 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 + +D ++ A+ A G + + ++ Sbjct: 617 VVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAAITAK 676 Query: 837 DVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 H+E E++ R G + ++ I+ VG V Sbjct: 677 HRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCYNQRPIVAVGDVVE 736 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 +IL + M ++ + D + +S +V ++ Sbjct: 737 YNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MSERLVKDDVYTSIH 790 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 I++ E + E + RD + +N+ R + G G K T Sbjct: 791 IEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVKDGDILVGKVTPKG 849 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD-MPP 1068 ++ R F + +V+ + K+ + GDD + P Sbjct: 850 VTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVKVFNREEGDDTLSP 903 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLGVP Sbjct: 904 GVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVP 963 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDY 1188 SRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 964 SRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST-------------------- 1003 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 + A + G +++LYDG TGEPFD Sbjct: 1004 -----IEEAGMARDG-----------------------------KTVLYDGRTGEPFDNR 1029 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA Sbjct: 1030 ISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1089 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 Y LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q+LGL + + + + Sbjct: 1090 YTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDEQD 1149 Query: 1369 KNSAK 1373 Sbjct: 1150 NEIEM 1154 >gi|289551658|ref|YP_003472562.1| DNA-directed RNA polymerase beta subunit [Staphylococcus lugdunensis HKU09-01] gi|315659117|ref|ZP_07911982.1| DNA-directed RNA polymerase subunit beta [Staphylococcus lugdunensis M23590] gi|289181189|gb|ADC88434.1| DNA-directed RNA polymerase beta subunit [Staphylococcus lugdunensis HKU09-01] gi|315495841|gb|EFU84171.1| DNA-directed RNA polymerase subunit beta [Staphylococcus lugdunensis M23590] Length = 1184 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 439/964 (45%), Positives = 599/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SYD FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFL----------KEGLLEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RL++ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLVI---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG ++ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSTDQEIVELLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI E G V+D + L+EI Sbjct: 273 YKANKKLHLKHRLFNQKLAEPIVNSETGEIVAEEGTVLDRRKLDEIMDVLET-------- 324 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N+ + V D+ + + + + D + + Sbjct: 325 NANSEVFELEGTVIDEPVEIQSIKVYV----------------------PNDEEGRTTTI 362 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G +V+ I DII+ + +L G G DDID+LGNRR+RSVGE+ Sbjct: 363 IGNAL--------PDSEVKCITPADIISSMSYFFNLLAGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDIDTNAITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R +E + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKYRGRVEHVESNEILVRRLIEENGKEYEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V +GD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVSIGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ VGAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 483 bits (1242), Expect = e-133, Method: Composition-based stats. Identities = 161/440 (36%), Positives = 223/440 (50%), Gaps = 60/440 (13%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS---GPKGFKKSTVL 1008 K++ S+ E+ E ARD + R+I + L + K +L Sbjct: 782 KDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAEVKDGDIL 841 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR-FKNKIEKIQWGDD-M 1066 + + + + ++ K+ + GDD + Sbjct: 842 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTL 901 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLG Sbjct: 902 SPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLG 961 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 962 VPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDEDVWST------------------ 1003 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + A + G +++LYDG TGEPFD Sbjct: 1004 -------IEEAGMARDG-----------------------------KTVLYDGRTGEPFD 1027 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1028 NRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1087 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q+LGL + + + Sbjct: 1088 AAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDE 1147 Query: 1367 RTKNSAKMEEIPDFNKCELK 1386 M ++ D + E K Sbjct: 1148 HDNEIE-MADVEDEDTTERK 1166 >gi|299783535|gb|ADJ41533.1| DNA-directed RNA polymerase [Lactobacillus fermentum CECT 5716] Length = 1190 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 431/966 (44%), Positives = 596/966 (61%), Gaps = 84/966 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++D+P+LIE+Q SY+ F+ ++GL+ F Sbjct: 1 MAGHLVKYGKHRTRRSYSRIKEVLDLPNLIEIQTDSYNWFM----------DKGLREMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V + D Y+ PL +TLRL Sbjct: 51 DIMPIDDFQGKLSLEFVDYQLLEPKYTVAEAREHDANYSAPLHVTLRLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG++++ + + +G+ Y Sbjct: 102 ETGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYNEEADK---NGRPSY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFY---PKI 236 IP++G W++ E D+K I +VRIDR RK+P+T + ALG S+ EI + Sbjct: 159 GANFIPNRGAWLEYETDAKGISYVRIDRTRKLPITELVRALGFGSDDEIWDMLGSESESL 218 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKF 295 + D D V + + GE +S + L + K + Sbjct: 219 NATIEKDLHK---EPEDSRVEESLKDIYERLRPGEPKTADSARSLLTTRFFDPKRYDMAP 275 Query: 296 LGITS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL 347 +G L GL +AE + + ETGEI + GDVI ++ L+E+ P+L Sbjct: 276 VGRYKTNKKLQMKYRLLGLTLAETLADPETGEIIAKDGDVITKEVLKELE-------PVL 328 Query: 348 YVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYD 407 D Y +A++ + + + + D ++ Sbjct: 329 EQDDFKMITY----------TPSDEAVVTAPVQL-----------QKIMVYSKNDPER-- 365 Query: 408 LSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSV 467 K+ + N D++HI+ DI+A I ++L+ G GT DDID+LGNRR+RSV Sbjct: 366 -------KVPVVSNGHISLDLKHIQPADILASINYFLNLQEGIGTTDDIDHLGNRRIRSV 418 Query: 468 GEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEE 527 GE+L+NQ+R+GL RMER ++ER+S DI++V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 419 GELLQNQFRIGLARMERVVRERMSIQDINTVTPQQLINIRPVVASIKEFFGSSQLSQFMD 478 Query: 528 HVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 N L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ Sbjct: 479 QTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLS 538 Query: 588 SFARVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELV 645 S+ARVNAYGFIETPYR+V D KVT+ + YL+A EE+N IAQAN+ L+EDGSF + + Sbjct: 539 SYARVNAYGFIETPYRRVSWADHKVTDRIDYLTADEEDNFIIAQANTPLNEDGSFVHDEI 598 Query: 646 FCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 CR + I E +D++D SPKQVVS+A++ IPFLENDDSNR LMG NMQRQAVPL+ Sbjct: 599 MCRDKEDYIETAPENVDYMDVSPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLIN 658 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 AP +GTG+E A SG A++AK +G VE VDA + +R +G LD Y+LM Sbjct: 659 PHAPLIGTGIEYKAAHDSGVALIAKNSGTVEYVDAREVRVRQEDGTLD-------TYKLM 711 Query: 766 KFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 KF+RSN NQRP+VKVG+ V +D++ADGPS + G+LALG+N L+AFM W GYNFED Sbjct: 712 KFRRSNGGKNYNQRPIVKVGEWVDADDVLADGPSMEQGELALGQNPLIAFMTWQGYNFED 771 Query: 826 SMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVG 885 ++ I+ER+V +DV+TSIHIE +E AR+TKLGPEE+TR+IPNVSE+ KN+DE G+I VG Sbjct: 772 AIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVSEDARKNLDESGVIRVG 831 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 AEV+ GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G + DV++F Sbjct: 832 AEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVF 891 Query: 946 NRHGID 951 R D Sbjct: 892 TRENGD 897 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 176/530 (33%), Positives = 254/530 (47%), Gaps = 67/530 (12%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 + G + + + G KN ++ I+ VG V+ D+L + + + + Sbjct: 699 RQEDGTLDTYKLMKFRRSNGGKNYNQRPIVKVGEWVDADDVLADGPS-MEQGELALGQNP 757 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 L A + + D V V + + E + E E+ +D Sbjct: 758 LIAFMTWQGYNFEDAIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVSED 817 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 + + + + I G G K T +S R F + +V+ Sbjct: 818 ARKNLDESGV------IRVGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVR 871 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + K+ + GD++ PGV ++V+V++A KR IQ GDKM+G Sbjct: 872 DTSLRVPHGGGGIIQDV------KVFTRENGDELAPGVNKMVRVYIAQKRKIQVGDKMSG 925 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG VS ++P EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG I Sbjct: 926 RHGNKGTVSIVVPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQVIELHLGMAARELGIHI 985 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D + D V+D Sbjct: 986 ATPVFDGANDQD---------------------------------------------VWD 1000 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 E A L G++ILYDG TGEPF++ V VG ++ LKL HMV DK++ARST Sbjct: 1001 AVKE---------AGLPSDGKTILYDGRTGEPFEQRVAVGVMHYLKLAHMVDDKIHARST 1051 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD VGR Y++I Sbjct: 1052 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVNTYQAI 1111 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 + G+ + G PESF VLVKE+Q+LGL + + + + + D Sbjct: 1112 IDGDQIPKPGVPESFRVLVKELQSLGLDMKVLDDKHEEIQLKSMDEDVAD 1161 >gi|41017744|sp|Q8GCR4|RPOB2_ENTFC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|27372995|gb|AAO00730.1| DNA-dependent RNA polymerase subunit beta [Enterococcus faecium] Length = 1208 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R RK F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERKSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 54 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + +V P D Sbjct: 329 FIDNGLNSVTYYPSEDGVVTDPMTVQVIKVFSPKDP------------------------ 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 365 --EREVNVIGNGYPESAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 543 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 603 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDASEIRVRRDNGALDK-------YAVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 176/504 (34%), Positives = 237/504 (47%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 778 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 779 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 830 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 831 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 889 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 890 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 944 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 945 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 994 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 995 ------------------SDEDVWETVREAGMASDAKTILYDG----------------- 1019 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1020 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1070 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1071 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1130 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + + Sbjct: 1131 VKELQSLGLDMRVLDIKDSEIELR 1154 >gi|296116736|ref|ZP_06835345.1| DNA-directed RNA polymerase subunit beta [Gluconacetobacter hansenii ATCC 23769] gi|295976720|gb|EFG83489.1| DNA-directed RNA polymerase subunit beta [Gluconacetobacter hansenii ATCC 23769] Length = 606 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 385/604 (63%), Positives = 485/604 (80%), Gaps = 1/604 (0%) Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 + K+ RSNQ+TC+NQRPLV+VGD+V +IIADGPST+LG+LALGRN+LVAFMPW+GYNF Sbjct: 1 MRKYMRSNQSTCINQRPLVRVGDQVSAGEIIADGPSTELGELALGRNVLVAFMPWNGYNF 60 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIIC 883 EDS+LISER+ +DVFTSIHIEEFEVMARDTKLG EEITRDIPNV EE L+N+DE GI+ Sbjct: 61 EDSILISERIARDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNLDEAGIVY 120 Query: 884 VGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVR 943 VGAEVNPGDIL+GK+TPKGESPMTPEEKLLRAIFGEKA DVRDTSL++P G SGT+VDVR Sbjct: 121 VGAEVNPGDILIGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGTSGTIVDVR 180 Query: 944 IFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK 1003 +F+R G+DK+ER++++ER +IE LA+D+DDE+ I +R+ Y+RL E L GQ A +G KG + Sbjct: 181 VFSRRGVDKDERAMAIERAEIERLAKDRDDERAIQERSFYNRLREHLIGQTAGAGFKGIR 240 Query: 1004 KSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWG 1063 T ++ +++SE+PR W V + V +E L+ +++T+ S ++ RF NK+EK+Q G Sbjct: 241 SGTPITDEVLSEHPRGAWRNVTVTSDAVMAELEVLRREFDTAVSRIQARFDNKVEKLQRG 300 Query: 1064 DDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLN 1123 D++PPGV+++VKVFVA+KR +Q GDKMAGRHGNKG+VSR++P EDMPFL+DGTPVD++LN Sbjct: 301 DELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDGTPVDLLLN 360 Query: 1124 PLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY-KANGDISPLRSFLEKVIGTGSHT 1182 PLGVPSRMNVGQI ETHLGWAC +G+ I L++ Y K L L V G + Sbjct: 361 PLGVPSRMNVGQILETHLGWACANIGRGIGQLVDTYHKTGEKRQELLDELRSVYGEDAFA 420 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242 I+D D +L ++ + GVP++TPVFDGA I +ML A LD+SGQS L DG TG Sbjct: 421 ANIADMTDAQLLELSNNLRKGVPIATPVFDGASIPDIEAMLEKAGLDKSGQSQLIDGRTG 480 Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302 EPF+R TVGYIYMLKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW + Sbjct: 481 EPFERKTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 540 Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +AYGAAY LQEMLT+KSDDV GRT+VYE+IV D FE G PESFNVL+KE+++LGL++D Sbjct: 541 EAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVREQDDFEAGIPESFNVLIKELKSLGLNVD 600 Query: 1363 LENS 1366 LE S Sbjct: 601 LEQS 604 >gi|116493170|ref|YP_804905.1| DNA-directed RNA polymerase subunit beta [Pediococcus pentosaceus ATCC 25745] gi|122265366|sp|Q03EA9|RPOB_PEDPA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|116103320|gb|ABJ68463.1| DNA-directed RNA polymerase subunit beta [Pediococcus pentosaceus ATCC 25745] Length = 1202 Score = 850 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 413/963 (42%), Positives = 588/963 (61%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F Sbjct: 1 MAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQSDSYQWFL----------DEGLREMFN 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y+ PK+ VD+ + Y+ PL +TLRL Sbjct: 51 DIMPIEDFAGKLSLEFVDYQLLEPKYTVDEAREHEANYSAPLHVTLRLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++++ D + + + ++ Sbjct: 102 ETGEIKSQDVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNLDTDK---NNRKIW 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W++ E D+K+I +VRIDR RK+P+T + ALG S+E I+ F Sbjct: 159 GTTVIPNRGAWLEYETDAKEISYVRIDRTRKIPMTELVRALGFGSDEEIIDIFGGSDSLD 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 D + D V + + GE +S + L + K + +G Sbjct: 219 FTLDKD-VHKNPEDSRVAESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDMAPVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L G +AE + + +TGE+ + G+++++ ++++ R + Sbjct: 278 YKVNKKLSLKTRLLGQTLAETLADPDTGEVIAQKGEMVNKDVMKKLAVFLDRPDFKMVTY 337 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + A + + + + +V P D Sbjct: 338 QPSEEAVVTEPMT-----------IQVIKVQDPNDP------------------------ 362 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +NM N + ++HI DIIA + L++G G+ DDID+LGNRR+RSVGE+ Sbjct: 363 --ERTLNMIGNGNIDAKLKHITPADIIASMNYFFLLQDGIGSTDDIDHLGNRRIRSVGEL 420 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D ++V PQ LIN +PVV+A EFF SSQLSQ + N Sbjct: 421 LQNQFRIGLSRMERVVRERMSIQDAETVTPQQLINIRPVVAATKEFFGSSQLSQFMDQTN 480 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L S+ Sbjct: 481 PLGELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLASYG 540 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 ++N YGFIETPYR+V D KVT+ + YL+A EE+ IAQANS L++DGSF +++V R Sbjct: 541 KINRYGFIETPYRRVSWEDHKVTDRIDYLTADEEDQFVIAQANSPLNDDGSFADDVVMAR 600 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 + I E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ + Sbjct: 601 HESDNIETSIENVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVDPHS 660 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P +GTG+E A SG A++ + AG+VE VDA + +R +G LD Y+LMKF+ Sbjct: 661 PLIGTGIEYKAAHDSGVALLCQHAGVVEYVDAREVRVRRDDGALD-------TYKLMKFR 713 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V+V D+V ++++ADGPS + G+LALG+N L+AFM W GYNFED++ Sbjct: 714 RSNGGKNYNQRPIVRVNDKVDADEVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAIA 773 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 I+ER+V +DV+TSIHIEE+E ARDTKLGPEE+TR+IPN+ E+ L+N+D+ GI+ VGAEV Sbjct: 774 INERLVRDDVYTSIHIEEYESEARDTKLGPEEMTREIPNIGEDALRNLDQDGIVRVGAEV 833 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 834 EDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKIFTRE 893 Query: 949 GID 951 D Sbjct: 894 NGD 896 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 260/1104 (23%), Positives = 411/1104 (37%), Gaps = 182/1104 (16%) Query: 319 EIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIY 378 I + E F S+ I I + ++ ++ ++L DIY Sbjct: 183 RIDRTRKIPMTELVRALGFGSDEEIIDIFGGSDSLDFTLDKDVHKNPEDSRVAESLKDIY 242 Query: 379 RVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTP----DDVRHIRKE 434 +RPG+ T + S+ FFD +YD++ VGR K+N +L+L T + Sbjct: 243 ERLRPGEPKTADSSRSLLTARFFDPKRYDMAPVGRYKVNKKLSLKTRLLGQTLAETLADP 302 Query: 435 DIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVD 494 D +I ++ N L + V + + + IK + + Sbjct: 303 DTGEVIAQKGEMVNKDVMKKLAVFLDRPDFKMVTYQPSEEAVVTEPMTIQVIKVQDPNDP 362 Query: 495 IDSVMPQDLINAKPVVSAVCEFFCSSQLSQLE---EHVNSLSRITHT--RRLSALGQ--- 546 ++ N + + + ++ + + S I H RR+ ++G+ Sbjct: 363 ERTLNMIGNGNIDAKLKHITPADIIASMNYFFLLQDGIGSTDDIDHLGNRRIRSVGELLQ 422 Query: 547 ----GGVARARAGVEMR-------DVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 G++R V R V P I P + G + N Sbjct: 423 NQFRIGLSRMERVVRERMSIQDAETVTPQQLINIRPVVAATKEFFGSSQLSQFMDQTNPL 482 Query: 596 GFIETPYRK----------------VCDGKVTNDVVYLSAMEEENRYIAQAN--SSLDED 637 G + R V D T+ E I N +S + Sbjct: 483 GELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLASYGKI 542 Query: 638 GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQ 697 + R E ++ID++ A + IA + P NDD + Sbjct: 543 NRYGFIETPYRRVSWEDHKVTDRIDYLTADEEDQFVIAQANSPL--NDDGSFADD----- 595 Query: 698 RQAVPLLKAEAPFVGTGMESVVAKS-SG---AAIVAKRAGIVEQVDAIRIVIRSVEGDLD 753 V + + E+ + T +E+V S A+ +E D+ R ++ + Sbjct: 596 ---VVMARHESDNIETSIENVDYMDVSPKQVVAVATACIPFLENDDSNRALMGAN----- 647 Query: 754 PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLV 813 QR PL+ G + + V Sbjct: 648 -------------MQRQAVPLVDPHSPLIGTGI-----------------EYKAAHDSGV 677 Query: 814 AFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 A + + + E V D G + + + G Sbjct: 678 ALLC-QHAGVVEYVDAREVRVRRD------------------DGALDTYKLMKFRRSNGG 718 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 KN ++ I+ V +V+ ++L + + + + L A + + D Sbjct: 719 KNYNQRPIVRVNDKVDADEVLADGPS-MEQGELALGQNPLIAFMTWQGYNFEDAIAIN-- 775 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVE---REQIELLARDKDDEQVILDRNIYSRLMEIL 990 V D + H + + + E + +D LD++ R+ Sbjct: 776 --ERLVRDDVYTSIHIEEYESEARDTKLGPEEMTREIPNIGEDALRNLDQDGIVRV---- 829 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 830 -GAEVEDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDV- 887 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++A KR +Q GDKMAGRHGNKG VS ++P EDMP Sbjct: 888 -----KIFTRENGDELSPGVNMMVRVYIAQKRKLQVGDKMAGRHGNKGTVSVVIPQEDMP 942 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 ++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG + + + D + DI + Sbjct: 943 YMPDGTPIDIMLSPMGVPSRMNIGQVLELHLGMAARNLGIHMTTPVFDGAQDKDIWEAVA 1002 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 + S+L Sbjct: 1003 EAGM-----------------------------------------DSDAKSVL------Y 1015 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 G++ GEPF++ V VG ++ +KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1016 DGRT-------GEPFEQRVAVGVMHYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFG 1068 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G G PESF VL Sbjct: 1069 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPRPGVPESFRVL 1128 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+QALGL + + + Sbjct: 1129 VKELQALGLDMKVLGGDDQEVELR 1152 >gi|314937431|ref|ZP_07844766.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium TX0133a04] gi|314942599|ref|ZP_07849431.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium TX0133C] gi|314952440|ref|ZP_07855444.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium TX0133A] gi|314993625|ref|ZP_07858976.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium TX0133B] gi|314998235|ref|ZP_07863108.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium TX0133a01] gi|313587799|gb|EFR66644.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium TX0133a01] gi|313591888|gb|EFR70733.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium TX0133B] gi|313595422|gb|EFR74267.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium TX0133A] gi|313598650|gb|EFR77495.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium TX0133C] gi|313643165|gb|EFS07745.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium TX0133a04] Length = 1208 Score = 850 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 54 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + +V P D Sbjct: 329 FIDNGLNSVTYYPSEDGVVTDPMTVQVIKVFSPRDP------------------------ 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 365 --EREVNVIGNGYPEAAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 543 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 603 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEYVDASEIRVRRDNGALDK-------YDVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 176/504 (34%), Positives = 236/504 (46%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 778 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 779 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 830 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 831 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 889 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 890 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 944 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 945 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 994 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 995 ------------------SDEDVWETVREAGMASDAKTVLYDG----------------- 1019 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1020 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1070 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1071 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1130 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + Sbjct: 1131 VKELQSLGLDMRVLDIEETEIELR 1154 >gi|256618015|ref|ZP_05474861.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis ATCC 4200] gi|256597542|gb|EEU16718.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis ATCC 4200] Length = 1207 Score = 850 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 593/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 54 DILPIDDFQGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKSQEVFFGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTIEKD-LHKNASDSRTEEGLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQIMETL-------------- 326 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 YI N L + +DA++ + T V + + Sbjct: 327 ----GEYIDNGLNSVTYYPSEDAVV--------TEPMTIQVIQVLSPKDP---------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N D V+ +R DI+A + +L G +DDID+LGNRR+RSVGE+ Sbjct: 365 --ERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ V YL+A E++ +AQANS L+EDG+F ++V R Sbjct: 543 KVNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL++ + Sbjct: 603 LQSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRS 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDK-------YMVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEAGEMALGQNVLVAFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 473 bits (1217), Expect = e-130, Method: Composition-based stats. Identities = 170/499 (34%), Positives = 233/499 (46%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + M + +L A + + D + V V Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEAGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKDDVY 786 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + ++L G+ Sbjct: 787 TSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVGKVT 846 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 847 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 889 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 890 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 949 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D + D+ Sbjct: 950 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGATDEDVWETVREAGMA 1009 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + G++ Sbjct: 1010 SDAKTVL-----------------------------------------------HDGRT- 1021 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 GEPFD ++VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1022 ------GEPFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1075 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1135 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + Sbjct: 1136 SLGLDMRVLDIEEAEIELR 1154 >gi|261209106|ref|ZP_05923509.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium TC 6] gi|260076933|gb|EEW64657.1| DNA directed RNA polymerase subunit beta [Enterococcus faecium TC 6] Length = 1205 Score = 850 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 1 MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 51 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 102 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 159 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 219 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 278 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + +V P D Sbjct: 326 FIDNGLNSVTYYPSEDGVVTDPMTVQVIKVFSPRDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 362 --EREVNVIGNGYPEAAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +T+ RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 480 PLGELTYKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 540 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 660 PWVGTGMEYKSAHDSGAALLCKHDGVVEYVDASEIRVRRDNGALDK-------YDVTKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 713 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 833 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 892 Query: 949 GID 951 D Sbjct: 893 AGD 895 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 176/504 (34%), Positives = 236/504 (46%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + Sbjct: 725 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 775 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 776 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 827 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 828 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 886 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 887 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 941 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 942 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 991 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 992 ------------------SDEDVWETVREAGMASDAKTVLYDG----------------- 1016 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1017 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1067 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1068 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1127 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + Sbjct: 1128 VKELQSLGLDMRVLDIEETEIELR 1151 >gi|326802951|ref|YP_004320769.1| DNA-directed RNA polymerase, beta subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650257|gb|AEA00440.1| DNA-directed RNA polymerase, beta subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 1200 Score = 850 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 426/988 (43%), Positives = 600/988 (60%), Gaps = 87/988 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G RVR+ + + E++++P+LIE+Q SY L ++G++ F Sbjct: 1 MAGHNVEYGKHRVRRSYSRINEVLELPNLIEIQTESYRWLL----------DKGIREMFS 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI G LEFV Y F PK+D+ + +D YA P+ + LRLI Sbjct: 51 DISPIEDHGGKLALEFVDYSFQEPKYDMSESRQQDTNYAAPMYVKLRLI---------NS 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK+Q ++ GD PLMT GTF+I G +R++VSQL RSPG++++ + +GKL Y Sbjct: 102 ETGEIKDQEVFFGDFPLMTDSGTFIINGSERVIVSQLVRSPGVYYN---DKVDKNGKLSY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+ +T + ALG S++ I F S Sbjct: 159 GATVIPNRGAWLEMETDAKDISYVRIDRTRKLQMTVLMRALGFGSDDQIRELFGDSETLS 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE ES + L + + + +G Sbjct: 219 LTLEKD-VHKNPSDSRTEEALKDIYERLRPGEPKTAESSRNLLNTRFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG V + L++I D Sbjct: 278 YKINKKLDLKSRLYKQTLAENLVDNETGEIVLEAGTVFTREVLDDI------------SD 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N + D + + +++ P D Sbjct: 326 KLDNGLGLVTVYPNDDAVITDPVDIQLIKIVAPKDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +++ N D + + D++ + ++L G GT DDID+LGNRR+RSVGE+ Sbjct: 362 --ERVVHVIGNAMQNSDYKSLTVADVLTAMNYFLNLYEGLGTTDDIDHLGNRRIRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ R+GL RMER ++ER+S DID+V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 420 LQNQLRIGLSRMERVVRERMSIQDIDTVTPQQLINIRPVVASIREFFGSSQLSQFMDQNN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A Sbjct: 480 PLSELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLATYA 539 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 ++N +GFIETPYR+V KVT+ + YL+A EE+ IAQ N+ L+EDGSF + + R Sbjct: 540 KINDFGFIETPYRRVDWNTHKVTDKIDYLTADEEDRFVIAQGNTPLNEDGSFATDTIMAR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E I V E++D++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPLL A Sbjct: 600 KIEENIEVSPEEVDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLLNPHA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME A SGAA+ KRAG+V+ VDA I +R+ EG LD Y L+KF Sbjct: 660 PLVGTGMEYKAAHDSGAAVTCKRAGVVDYVDAREIRVRTEEGALDK-------YELVKFY 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN ++C NQ PLV+ GD+V +++I+A+GPS + G+LALG+N ++AFM W GYN+ED+++ Sbjct: 713 RSNASSCYNQTPLVRKGDQVDKDEILANGPSMEGGELALGQNPIIAFMTWDGYNYEDAVV 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TSIHI+E E ARDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 LSERLVKEDVYTSIHIDELESEARDTKLGPEEITREIPNVGEDALRNLDENGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++PEE LL AIFGEKA +VRDTSLRVP G G V DV++F+R Sbjct: 833 TDGDILVGKVTPKGVTELSPEEHLLHAIFGEKAREVRDTSLRVPHGGGGIVNDVKVFHRE 892 Query: 949 GIDKNE-------RSISVEREQIELLAR 969 D+ + R +++ +I++ + Sbjct: 893 NGDELKPGVSMMVRVYIIQKRKIQVGDK 920 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 169/437 (38%), Positives = 219/437 (50%), Gaps = 70/437 (16%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEILCGQNAVSGPKG 1001 K + S+ +++E ARD + R I I G G Sbjct: 779 KEDVYTSIHIDELESEARDTKLGPEEITREIPNVGEDALRNLDENGIIRIGAEVTDGDIL 838 Query: 1002 FKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQ 1061 K T +S F + +V+ + + + K+ + Sbjct: 839 VGKVTPKGVTELSPEEHLLHAIFGEKAREVRDTSLRVPHGGGGIVNDV------KVFHRE 892 Query: 1062 WGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIV 1121 GD++ PGV +V+V++ KR IQ GDKMAGRHGNKG+VS +LP EDMP+L DGTPVDI Sbjct: 893 NGDELKPGVSMMVRVYIIQKRKIQVGDKMAGRHGNKGVVSIVLPEEDMPYLPDGTPVDIC 952 Query: 1122 LNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSH 1181 LNPLGVPSRMN+GQ+ E HLG A LG + + + D + DI Sbjct: 953 LNPLGVPSRMNIGQVLELHLGMAARNLGIHVATPVFDGAQDEDIWETVKEAGMA------ 1006 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLT 1241 E ++L YDG T Sbjct: 1007 -----------------------------------EDAKTVL-------------YDGRT 1018 Query: 1242 GEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWC 1301 GEPFD V+VG +Y LKL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1019 GEPFDNRVSVGVMYYLKLSHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA 1078 Query: 1302 IQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361 ++AYGAAY LQE+LT KSDDVVGR + YE+IV G+ + PESF VLVKE+Q+LGL I Sbjct: 1079 LEAYGAAYTLQEILTYKSDDVVGRVQTYEAIVKGDPIPKPSVPESFRVLVKELQSLGLDI 1138 Query: 1362 DLENSRTKNSAKMEEIP 1378 + + K +E P Sbjct: 1139 QVLDESDKELDLRDEDP 1155 >gi|282924456|ref|ZP_06332128.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A9765] gi|282592867|gb|EFB97871.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus A9765] Length = 1183 Score = 850 bits (2196), Expect = 0.0, Method: Composition-based stats. Identities = 442/964 (45%), Positives = 596/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMGQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH R LSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRHLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 496 bits (1277), Expect = e-137, Method: Composition-based stats. Identities = 246/1146 (21%), Positives = 421/1146 (36%), Gaps = 106/1146 (9%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD R + Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPK--------RYDLAS 269 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 T + + + + +V+ G+ +++ L R++ + ++L++ Sbjct: 270 VGRYKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSE 329 Query: 479 LLRMERSIKER-ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 + + S+ + + I +P D + + F S++ + S Sbjct: 330 VFELHGSVIDEPVEIQSIKVYVPNDDEGRT--TTVIGNAFPDSEVKCITPADIIASMSYF 387 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 LS +G +R V + + + S+ + Sbjct: 388 FNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTESITPQQL 447 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLD-EDGSFTEELVFCRCAGEEILV 656 I R V + + + QAN + L E + Sbjct: 448 I--NIRPVIASIK----EFFGSSQLSQFM-GQANPLAELTHKRHLSALGPGGLTRERAQM 500 Query: 657 PREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 + + + I + + S + + + + + Sbjct: 501 EVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTHAITDQI 560 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC 775 + + A + +VA+ + + + + K + + Sbjct: 561 DYLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMAKEKMDYMDVSPK 615 Query: 776 VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835 + +D ++ A+ A G + + + Sbjct: 616 QVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAAITA 675 Query: 836 EDVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 + H+E E++ R G + ++ I+ VG V Sbjct: 676 KHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCYNQRPIVAVGDVV 735 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 +IL + M ++ + D + +S +V ++ Sbjct: 736 EYNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MSERLVKDDVYTSI 789 Query: 949 GIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVL 1008 I++ E + E + RD + +N+ R + G G K T Sbjct: 790 HIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVKDGDILVGKVTPK 848 Query: 1009 SSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD-MP 1067 ++ R F + +V+ + K+ + GDD + Sbjct: 849 GVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVKVFNREEGDDTLS 902 Query: 1068 PGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV 1127 PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLGV Sbjct: 903 PGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGV 962 Query: 1128 PSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISD 1187 PSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 963 PSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------------------- 1003 Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247 + A + G +++LYDG TGEPFD Sbjct: 1004 ------IEEAGMARDG-----------------------------KTVLYDGRTGEPFDN 1028 Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA Sbjct: 1029 RISVGVMYMLKLVHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1088 Query: 1308 AYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSR 1367 AY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q+LGL + + + + Sbjct: 1089 AYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDEQ 1148 Query: 1368 TKNSAK 1373 Sbjct: 1149 DNEIEM 1154 >gi|28377825|ref|NP_784717.1| DNA-directed RNA polymerase subunit beta [Lactobacillus plantarum WCFS1] gi|41017720|sp|Q88XZ3|RPOB_LACPL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|28270658|emb|CAD63564.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus plantarum WCFS1] Length = 1204 Score = 850 bits (2196), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 585/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y+ PK+ V++ D Y+ PL +TLRL Sbjct: 54 DIMPIDDFAGKLSLEFVDYQLLEPKYTVEEAREHDANYSAPLHVTLRLT---------NH 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F+ + + +G+ Y Sbjct: 105 ETGEIKSQDVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFNEELDK---NGRPSY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+K++ +VRIDR RK+P+T + ALG S++ I+ Sbjct: 162 GTTVIPNRGAWLELETDAKNVSYVRIDRTRKIPLTELVRALGYGSDDDIIDMLGETDSLM 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + D V + + GE +S + L + K Sbjct: 222 LTLEKD-VHKNTDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDFAPVGR 280 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 V L +AE + + +TGE+ + VID+ + ++ RD Sbjct: 281 YKVNKKLSMKTRLMDQTLAETLADPDTGEVIAQKDTVIDKNVMAKLSPYLERDDFKTVTY 340 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + ++ A + N +V L + +V D Sbjct: 341 TPSDEAVVTNPMV-----------LQVVKVYSQNDP------------------------ 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N + +HI DIIA I +L+ G G+ DDID+LGNRR+RSVGE+ Sbjct: 366 --EKVVNVIGNGNIDLKFKHIVPADIIASINYFFNLQEGLGSTDDIDHLGNRRIRSVGEL 423 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 424 LQNQFRIGLSRMERVVRERMSIQDAATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 483 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+A Sbjct: 484 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA 543 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN GFIETPYR+V KVT+ + YL+A EE+ IAQANS L++DGSF E+ V R Sbjct: 544 KVNRSGFIETPYRRVDWTTHKVTDKIDYLAADEEDQFVIAQANSPLNDDGSFVEDTVLAR 603 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + P E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPLL A Sbjct: 604 NKEENLETPIENVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLDPHA 663 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P +GTG+E A SG A++ + G VE VDA + +R +G LD Y+LMKF+ Sbjct: 664 PLIGTGIEYKAAHDSGIALICRHEGTVEYVDAREVRVRRDDGSLD-------TYKLMKFR 716 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+VKVGD V ++++ADGP+ + G+LALG+N LVAFM W+GYNFED+++ Sbjct: 717 RSNGGKNYNQRPIVKVGDHVDNDEVLADGPAMEGGELALGQNPLVAFMTWNGYNFEDAII 776 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 I+ER+V EDV+TSIHIEE+E ARDTKLGPEE+TR+IPNV E+ LKN+DE GII +GAEV Sbjct: 777 INERLVREDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALKNLDEDGIIRIGAEV 836 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R Sbjct: 837 KDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRE 896 Query: 949 GID 951 D Sbjct: 897 NGD 899 Score = 513 bits (1320), Expect = e-142, Method: Composition-based stats. Identities = 267/1108 (24%), Positives = 409/1108 (36%), Gaps = 168/1108 (15%) Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 + D N I + E + S+ I +L ++ + Sbjct: 175 LETDAKNVSYVRIDRTRKIPLTELVRALGYGSDDDIIDMLGETDSLMLTLEKDVHKNTDD 234 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 +++L DIY +RPG+ T + S+ FFD +YD + VGR K+N +L++ T Sbjct: 235 SRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDFAPVGRYKVNKKLSMKTRLM 294 Query: 428 VRHIR----KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 + + D +I + + L ++V ++ + + Sbjct: 295 DQTLAETLADPDTGEVIAQKDTVIDKNVMAKLSPYLERDDFKTVTYTPSDEAVVTNPMVL 354 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT----- 538 + +K + V N + + ++ L Sbjct: 355 QVVKVYSQNDPEKVVNVIGNGNIDLKFKHIVPADIIASINYFFNLQEGLGSTDDIDHLGN 414 Query: 539 RRLSALGQ-------GGVARARAGVEMR-------DVHPTHYGRICPAETSEGHNIGLVS 584 RR+ ++G+ G++R V R V P I P S G Sbjct: 415 RRIRSVGELLQNQFRIGLSRMERVVRERMSIQDAATVTPQQLINIRPVVASIKEFFGSSQ 474 Query: 585 SLTSFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLSAMEEENRYIA 628 + N G + R V D T+ E I Sbjct: 475 LSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIG 534 Query: 629 QANS--SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDD 686 NS S + R +KID++ A + IA + P NDD Sbjct: 535 LINSLSSYAKVNRSGFIETPYRRVDWTTHKVTDKIDYLAADEEDQFVIAQANSPL--NDD 592 Query: 687 SNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR 746 + V + + L + A+ +E D+ R ++ Sbjct: 593 GSFVEDTVLARNKEENLETPIENVDYMDVSPKQV----VAVATACIPFLENDDSNRALMG 648 Query: 747 SVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLA 806 + QR PL+ G + Sbjct: 649 AN------------------MQRQAVPLLDPHAPLIGTGI-----------------EYK 673 Query: 807 LGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIP 866 + +A + H E R+ +D + + R + G R I Sbjct: 674 AAHDSGIALICRHEGTVEYVDAREVRVRRDDGSLDTYKL---MKFRRSNGGKNYNQRPIV 730 Query: 867 NVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRD 926 V + ++D ++ G + G++ +G E A+ + + Sbjct: 731 KVGD----HVDNDEVLADGPAMEGGELALG-------QNPLVAFMTWNGYNFEDAIIINE 779 Query: 927 TSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRL 986 +R S + + R E E ++ DE I+ + Sbjct: 780 RLVREDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALKNL-DEDGIIRIGAEVKD 838 Query: 987 MEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSK 1046 +IL G+ G L + E R +V+ + Sbjct: 839 GDILVGKVTPKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGII 887 Query: 1047 SILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPC 1106 + KI + GD++ PGV +V+V++A KR IQ GDKMAGRHGNKG VS ++P Sbjct: 888 QDV------KIFTRENGDELSPGVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSIVVPE 941 Query: 1107 EDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDIS 1166 EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG + + + D + DI Sbjct: 942 EDMPYMPDGTPIDIMLSPMGVPSRMNIGQVLELHLGMAARKLGIHMATPVFDGAQDTDIW 1001 Query: 1167 PLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA 1226 EAI A Sbjct: 1002 --------------------------------------------------EAIRE----A 1007 Query: 1227 DLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGK 1286 +D +SI+YDG TGEPFD+ V VG ++ +KL+HMV DK++ARS G YSLVTQQPLGGK Sbjct: 1008 GVDSDAKSIVYDGRTGEPFDKRVAVGVMHYMKLSHMVDDKIHARSIGPYSLVTQQPLGGK 1067 Query: 1287 SNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPES 1346 + GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PES Sbjct: 1068 AQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPES 1127 Query: 1347 FNVLVKEMQALGLSIDLENSRTKNSAKM 1374 F VLVKE+QALGL + + +S K Sbjct: 1128 FRVLVKELQALGLDMKVLDSEDKEIELR 1155 >gi|227517171|ref|ZP_03947220.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis TX0104] gi|257083106|ref|ZP_05577467.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis Fly1] gi|257417341|ref|ZP_05594335.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis AR01/DG] gi|227075394|gb|EEI13357.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis TX0104] gi|256991136|gb|EEU78438.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis Fly1] gi|257159169|gb|EEU89129.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis ARO1/DG] Length = 1207 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 593/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 54 DILPIDDFQGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKSQEVFFGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTIEKD-LHKNASDSRTEEGLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQIMETL-------------- 326 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 YI N L + +DA++ + T V + + Sbjct: 327 ----GEYIDNGLNSVTYYPSEDAVV--------TEPMTIQVIQVLSPKDP---------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N D V+ +R DI+A + +L G +DDID+LGNRR+RSVGE+ Sbjct: 365 --ERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ V YL+A E++ +AQANS L+EDG+F ++V R Sbjct: 543 KVNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSVLNEDGTFANDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL++ + Sbjct: 603 LQSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRS 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDK-------YMVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 175/499 (35%), Positives = 237/499 (47%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + E M + +L A + + D + V V Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKDDVY 786 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + ++L G+ Sbjct: 787 TSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVGKVT 846 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 847 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 889 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 890 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 949 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 950 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA--------------- 994 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D+ V + T ++DG Sbjct: 995 -------------TDEDVWETVREAGMASDAKTVLYDG---------------------- 1019 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD ++VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1020 ----RTGEPFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1075 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1135 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + Sbjct: 1136 SLGLDMRVLDIEEAEIELR 1154 >gi|270291141|ref|ZP_06197364.1| DNA-directed RNA polymerase, beta subunit [Pediococcus acidilactici 7_4] gi|270280537|gb|EFA26372.1| DNA-directed RNA polymerase, beta subunit [Pediococcus acidilactici 7_4] Length = 1202 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 419/963 (43%), Positives = 591/963 (61%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F Sbjct: 4 LAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTDSYQWFL----------DEGLREMFN 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y+ PK+ VD+ + Y+ PL +TLRL Sbjct: 54 DIMPIEDFAGKLSLEFVDYQLLEPKYTVDEAREHEANYSAPLHVTLRLT---------NH 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++++ D + + + ++ Sbjct: 105 ETGEIKSQDVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNLDVDK---NNRNIW 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G ++ E D+K++ +VRIDR RK+P+T + ALG S+E I+ F Sbjct: 162 GATVIPNRGARLEYETDAKEVSYVRIDRTRKIPMTELVRALGFGSDEEIIDIFGGSDSLD 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 D + D V + + GE +S + L + K + +G Sbjct: 222 FTLDKD-VHKNPEDSRVAESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDMAPVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L G +AE + + +TGE+ + GDV+D+ ++++ P L Sbjct: 281 YKVNKKLSLKTRLLGQTLAETLADPDTGEVLAQKGDVVDKDVMKKLA-------PYLDRQ 333 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 Y + D+ + + + ++ P D + +L Sbjct: 334 DFKMVTYQPS----DEAVVPEPMTIQVIKIQDPNDP------------------ERELKM 371 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +G ++++L +HI DIIA I L+ G G+ DDID+LGNRR+RSVGE+ Sbjct: 372 IGNGNIDLKL--------KHITPADIIASINYFFLLQQGIGSTDDIDHLGNRRIRSVGEL 423 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D ++V PQ LIN +PVV+A EFF SSQLSQ + N Sbjct: 424 LQNQFRIGLARMERVVRERMSIQDAETVTPQQLINIRPVVAATKEFFGSSQLSQFMDQTN 483 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L S+ Sbjct: 484 PLGELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLASYG 543 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 ++N YGFIETPYR+V D KVT+ + YL+A EE+ IAQANS L++DGSF +++V R Sbjct: 544 KINRYGFIETPYRRVSWKDHKVTDRIDYLTADEEDQFVIAQANSPLNDDGSFVDDVVMAR 603 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 + I E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPLL A Sbjct: 604 HESDNIETSIENVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLDPHA 663 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P +GTG+E A SG A++ + G+VE VDA I +R +G LD Y+LMKF+ Sbjct: 664 PLIGTGIEYKAAHDSGVALLCQHPGVVEYVDAREIRVRRDDGALD-------TYKLMKFR 716 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V+V D+V +D++ADGPS +LG+LALG+N L+AFM W GYNFED++ Sbjct: 717 RSNGGKNYNQRPIVRVNDKVDADDVLADGPSMELGELALGQNPLIAFMTWQGYNFEDAIA 776 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 I+ER+V +DV+TSIHIEE+E ARDTKLGPEE+TR+IPNV E+ L+N+D+ GI+ +GAEV Sbjct: 777 INERLVRDDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALRNLDQDGIVRIGAEV 836 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 837 QDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKIFTRE 896 Query: 949 GID 951 D Sbjct: 897 NGD 899 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 168/525 (32%), Positives = 242/525 (46%), Gaps = 73/525 (13%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 G + + + G KN ++ I+ V +V+ D+L + + + Sbjct: 701 RRDDGALDTYKLMKFRRSNGGKNYNQRPIVRVNDKVDADDVLADGPS-MELGELALGQNP 759 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE---REQIELLAR 969 L A + + D V D + H + + + E + Sbjct: 760 LIAFMTWQGYNFEDAIAIN----ERLVRDDVYTSIHIEEYESEARDTKLGPEEMTREIPN 815 Query: 970 DKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDE 1029 +D LD++ R+ G G K T +S R F + Sbjct: 816 VGEDALRNLDQDGIVRI-----GAEVQDGDILVGKVTPKGVTELSAEERLLHAIFGEKAR 870 Query: 1030 KVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDK 1089 +V+ + + KI + GD++ PGV +V+V++A KR +Q GDK Sbjct: 871 EVRDTSLRVPHGGGGIVQDV------KIFTRENGDELSPGVNMMVRVYIAQKRKLQVGDK 924 Query: 1090 MAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLG 1149 MAGRHGNKG VS ++P EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG Sbjct: 925 MAGRHGNKGTVSVVIPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQVLELHLGMAARNLG 984 Query: 1150 KKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTP 1209 + + + D + DI + Sbjct: 985 IHMTTPVFDGARDEDIWEAVAEAGM----------------------------------- 1009 Query: 1210 VFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYA 1269 + S+L G++ GEPF++ V VG ++ +KL HMV DK++A Sbjct: 1010 ------DSDAKSVL------YDGRT-------GEPFEQRVAVGVMHYMKLAHMVDDKIHA 1050 Query: 1270 RSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVY 1329 RS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD+VGR + Y Sbjct: 1051 RSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDIVGRVKTY 1110 Query: 1330 ESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 E+IV G G PESF VLVKE+QALGL + + + Sbjct: 1111 EAIVKGESIPRPGVPESFRVLVKELQALGLDMKVLGEDKQEVELR 1155 >gi|29377682|ref|NP_816836.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis V583] gi|227555177|ref|ZP_03985224.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis HH22] gi|229547349|ref|ZP_04436074.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis TX1322] gi|229547924|ref|ZP_04436649.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis ATCC 29200] gi|255970583|ref|ZP_05421169.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis T1] gi|255974167|ref|ZP_05424753.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis T2] gi|256760947|ref|ZP_05501527.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis T3] gi|256854893|ref|ZP_05560257.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis T8] gi|256958498|ref|ZP_05562669.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis DS5] gi|256963053|ref|ZP_05567224.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis HIP11704] gi|257078189|ref|ZP_05572550.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis JH1] gi|257080348|ref|ZP_05574709.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis E1Sol] gi|257088388|ref|ZP_05582749.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis D6] gi|257091457|ref|ZP_05585818.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis CH188] gi|257418061|ref|ZP_05595055.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis T11] gi|257420330|ref|ZP_05597320.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis X98] gi|307267872|ref|ZP_07549263.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX4248] gi|307273722|ref|ZP_07554949.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0855] gi|307276540|ref|ZP_07557658.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX2134] gi|307284751|ref|ZP_07564907.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0860] gi|307288302|ref|ZP_07568298.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0109] gi|307292252|ref|ZP_07572115.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0411] gi|312899231|ref|ZP_07758568.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0470] gi|312905536|ref|ZP_07764650.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0635] gi|312953784|ref|ZP_07772613.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0102] gi|41017700|sp|Q82Z40|RPOB_ENTFA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|29345150|gb|AAO82906.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis V583] gi|227175695|gb|EEI56667.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis HH22] gi|229306945|gb|EEN72941.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis ATCC 29200] gi|229307498|gb|EEN73485.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis TX1322] gi|255961601|gb|EET94077.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis T1] gi|255967039|gb|EET97661.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis T2] gi|256682198|gb|EEU21893.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis T3] gi|256710453|gb|EEU25497.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis T8] gi|256948994|gb|EEU65626.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis DS5] gi|256953549|gb|EEU70181.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis HIP11704] gi|256986219|gb|EEU73521.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis JH1] gi|256988378|gb|EEU75680.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis E1Sol] gi|256996418|gb|EEU83720.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis D6] gi|257000269|gb|EEU86789.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis CH188] gi|257159889|gb|EEU89849.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis T11] gi|257162154|gb|EEU92114.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis X98] gi|306496667|gb|EFM66221.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0411] gi|306500740|gb|EFM70061.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0109] gi|306503010|gb|EFM72267.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0860] gi|306506650|gb|EFM75802.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX2134] gi|306509589|gb|EFM78632.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0855] gi|306515806|gb|EFM84328.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX4248] gi|310628310|gb|EFQ11593.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0102] gi|310631265|gb|EFQ14548.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0635] gi|311293586|gb|EFQ72142.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0470] gi|315026471|gb|EFT38403.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX2137] gi|315031924|gb|EFT43856.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0017] gi|315034145|gb|EFT46077.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0027] gi|315144223|gb|EFT88239.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX2141] gi|315146440|gb|EFT90456.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX4244] gi|315152719|gb|EFT96735.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0031] gi|315154657|gb|EFT98673.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0043] gi|315161240|gb|EFU05257.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0645] gi|315163558|gb|EFU07575.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX1302] gi|315167096|gb|EFU11113.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX1341] gi|315171082|gb|EFU15099.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX1342] gi|315172932|gb|EFU16949.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX1346] gi|315574598|gb|EFU86789.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0309B] gi|315578503|gb|EFU90694.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0630] Length = 1207 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 593/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 54 DILPIDDFQGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKSQEVFFGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTIEKD-LHKNASDSRTEEGLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQIMETL-------------- 326 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 YI N L + +DA++ + T V + + Sbjct: 327 ----GEYIDNGLNSVTYYPSEDAVV--------TEPMTIQVIQVLSPKDP---------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N D V+ +R DI+A + +L G +DDID+LGNRR+RSVGE+ Sbjct: 365 --ERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ V YL+A E++ +AQANS L+EDG+F ++V R Sbjct: 543 KVNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL++ + Sbjct: 603 LQSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRS 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDK-------YMVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 175/499 (35%), Positives = 237/499 (47%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + E M + +L A + + D + V V Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKDDVY 786 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + ++L G+ Sbjct: 787 TSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVGKVT 846 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 847 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 889 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 890 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 949 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 950 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA--------------- 994 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D+ V + T ++DG Sbjct: 995 -------------TDEDVWETVREAGMASDAKTVLYDG---------------------- 1019 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD ++VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1020 ----RTGEPFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1075 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1135 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + Sbjct: 1136 SLGLDMRVLDIEEAEIELR 1154 >gi|256960563|ref|ZP_05564734.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis Merz96] gi|293385239|ref|ZP_06631055.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis R712] gi|293389749|ref|ZP_06634193.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis S613] gi|312906590|ref|ZP_07765590.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis DAPTO 512] gi|312910949|ref|ZP_07769784.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis DAPTO 516] gi|256951059|gb|EEU67691.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis Merz96] gi|291077439|gb|EFE14803.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis R712] gi|291080996|gb|EFE17959.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis S613] gi|310627238|gb|EFQ10521.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis DAPTO 512] gi|311288817|gb|EFQ67373.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis DAPTO 516] Length = 1207 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 592/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 54 DILPIDDFQGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKSQEVFFGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTIEKD-LHKNASDSRTEEGLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQIMETL-------------- 326 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 YI N L + +DA++ + T V + + Sbjct: 327 ----GEYIDNGLNSVTYYPSEDAVV--------TEPMTIQVIQVLSPKDP---------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N D V+ +R DI+A + +L G +DDID+LGNRR+RSVGE+ Sbjct: 365 --ERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ V YL+A E++ +AQANS L+EDG+F ++V R Sbjct: 543 KVNKFGFIETPYRRVDRTTGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL++ + Sbjct: 603 LQSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRS 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDK-------YMVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 175/499 (35%), Positives = 237/499 (47%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + E M + +L A + + D + V V Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKDDVY 786 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + ++L G+ Sbjct: 787 TSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVGKVT 846 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 847 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 889 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 890 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 949 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 950 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA--------------- 994 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D+ V + T ++DG Sbjct: 995 -------------TDEDVWETVREAGMASDAKTVLYDG---------------------- 1019 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD ++VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1020 ----RTGEPFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1075 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1135 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + Sbjct: 1136 SLGLDMRVLDIEEAEIELR 1154 >gi|18311395|ref|NP_563329.1| DNA-directed RNA polymerase subunit beta [Clostridium perfringens str. 13] gi|110799233|ref|YP_697102.1| DNA-directed RNA polymerase subunit beta [Clostridium perfringens ATCC 13124] gi|168208049|ref|ZP_02634054.1| DNA-directed RNA polymerase, beta subunit [Clostridium perfringens E str. JGS1987] gi|168211996|ref|ZP_02637621.1| DNA-directed RNA polymerase, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|123049581|sp|Q0TMN8|RPOB_CLOP1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|124053360|sp|P0C2E7|RPOB_CLOPE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|15186724|dbj|BAB62884.1| RNA polymerase beta subunit [Clostridium perfringens] gi|18146079|dbj|BAB82119.1| RNA polymerase beta subunit [Clostridium perfringens str. 13] gi|110673880|gb|ABG82867.1| DNA-directed RNA polymerase, beta subunit [Clostridium perfringens ATCC 13124] gi|170660657|gb|EDT13340.1| DNA-directed RNA polymerase, beta subunit [Clostridium perfringens E str. JGS1987] gi|170710068|gb|EDT22250.1| DNA-directed RNA polymerase, beta subunit [Clostridium perfringens B str. ATCC 3626] Length = 1234 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 430/955 (45%), Positives = 592/955 (61%), Gaps = 65/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K ++ ++P+LIE+Q SY FL + GL F + PI+ F+G Sbjct: 9 KRTRMSFAKVKDVAEMPNLIEIQLDSYKWFL----------DAGLYEVFDDINPISNFTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +LEFV Y D K+ V++C RD TYA PLK+ +RL K +IKEQ Sbjct: 59 NLVLEFVGYTLDMDNIKYSVEECKERDTTYAAPLKVAVRL---------QNKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG++++++ + GK L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNYNVDKT---GKKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ E DS D+I+VRID+ RK+P++ A+G S+ E+L F + + + Sbjct: 167 GAWLEYETDSNDVIYVRIDKTRKLPISILGRAMGFGSDQELLEYFGEEERFKATIEKDNT 226 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD----- 301 L+ K + GE ++S L L K + +G Sbjct: 227 KTKEEALLEIYK------RLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLA 280 Query: 302 ---CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + AEDIV+ TGE+ + G+ I + EEI + I + +L D V I Sbjct: 281 IGLRIANQIAAEDIVDKLTGEVLVAKGEKISRANAEEIQNRGINSVDVLVEDRVIR---I 337 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 D +K + ++ + + + Y + ++ Sbjct: 338 IGNHFVDIHKCVD----FDISDLNIRELVHYPTLREILDN-------YSDEETIKEEIKK 386 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 + P +HI K+DI A I + L G +DDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 387 NMTRLIP---KHIIKDDIFATISYQIGLAYNIGYVDDIDHLGNRRLRSVGELLQNQFRIG 443 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L RMER +KER++ D +++ PQ LIN +PV +A+ EFF SSQLSQ + N LS +TH Sbjct: 444 LSRMERVVKERMTIQDQEAITPQQLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHK 503 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A+VN YGFI Sbjct: 504 RRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFI 563 Query: 599 ETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 ETPYR V +VT ++ Y +A EE+ +AQAN LDE+G F ++ V R GE ++V Sbjct: 564 ETPYRVVDKAEGRVTGEIRYFTADEEDQYLVAQANEPLDENGCFIDKKVTVRDKGEVLVV 623 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P + +D +D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK AP VGTG+E Sbjct: 624 PSKDVDLMDVSPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPYAPIVGTGIE 683 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A SG AK AG V V A + ++ GVD YRL+KF+RSNQ TC+ Sbjct: 684 YKAAVDSGVLPKAKNAGEVVYVSANEVRVKRE------LDGGVDTYRLLKFKRSNQGTCI 737 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP+V GD V + +++ADGPSTDLG++ALG+N+ + F+ W GYN+ED+MLISE +V E Sbjct: 738 NQRPIVAKGDWVLKGEVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVRE 797 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEE+E ARDTKLGPEEITRDIPNVSE+ LK+IDE GII +GAEV GDILVG Sbjct: 798 DVFTSIHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDERGIIRIGAEVRSGDILVG 857 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV++F R D Sbjct: 858 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRENGD 912 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 261/1155 (22%), Positives = 419/1155 (36%), Gaps = 140/1155 (12%) Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSDCLC---GLYVAEDIVNGETG----------EIY 321 E G + +G + + + V+ G+ + G + V G ++ Sbjct: 121 EQGTFIINGAERVIVSQLVRSPGVYYNYNVDKTGKKLFSATVIPNRGAWLEYETDSNDVI 180 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 D + + + + ++ + T+ D K +++ALL+IY+ + Sbjct: 181 YVRIDKTRKLPISILGRAMGFGSDQELLEYFGEEERFKATIEKDNTKTKEEALLEIYKRL 240 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 RPG+ T A S+ + LFFD+ +YDLS VGR K N +L + + ++ + + Sbjct: 241 RPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLAIGLRIANQIAAEDIVDKLTG 300 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 ++ + K + + + + NR + SV ++++ R+ R I + Sbjct: 301 EVLVAKGEKISRANAEEIQNRGINSVDVLVED-------RVIRIIGNHFVDIHKCVDFDI 353 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDV 561 +N + V L + I + ++ L + + + Sbjct: 354 SDLN---IRELVHYPTLREILDNYSDEETIKEEI--KKNMTRLIPKHIIKDDIFATISYQ 408 Query: 562 HPTHY--GRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSA 619 Y G + + + V L + + R V + D ++ Sbjct: 409 IGLAYNIGYVDDIDHLGNRRLRSVGELL---QNQFRIGLSRMERVVKERMTIQDQEAITP 465 Query: 620 MEEENRY-IAQAN---------SSLDEDGSFTEELVFCRC---------AGEEILVPREK 660 + N +A A S + + EL R + E Sbjct: 466 QQLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRD 525 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + + L N + + + + +A TG Sbjct: 526 VHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFIETPYRVVDKAEGRVTGEIRYFT 585 Query: 721 KSSGA---AIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 A + V +G++ S + Sbjct: 586 ADEEDQYLVAQANEPLDENGCFIDKKVTVRDKGEVLVVPSK---------DVDLMDVSPR 636 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV--S 835 Q V + A +L + P G E + ++ + Sbjct: 637 QLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPYAPIVGTGIEYKAAVDSGVLPKA 696 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 ++ +++ EV + G + R + I++ I+ G V G++L Sbjct: 697 KNAGEVVYVSANEVRVKRELDGGVDTYRLLKFKRSNQGTCINQRPIVAKGDWVLKGEVLA 756 Query: 896 GKITPKGESPMTPEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 + + + I E A+ + + +R S + + R Sbjct: 757 DGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVREDVFTSIHIEEYECEARDTK 816 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSS 1010 E E +D DE+ I+ R +IL G+ G L Sbjct: 817 LGPEEITRDIPNVSEDALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLR 875 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 + E R E K+ + GDD+ PGV Sbjct: 876 AIFGEKAR-----------------EVRDTSLRVPHGEAGIIVDVKVFTRENGDDLSPGV 918 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +V+ ++A KR I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSR Sbjct: 919 NELVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSR 978 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MN+GQ+ E HLGWA LG I + + D DI + Sbjct: 979 MNIGQVLEVHLGWAASALGWHIATPVFDGATETDIEDCLEKAGYNRNGKTVL-------- 1030 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 G TGE FD VT Sbjct: 1031 ---------------------------------------RDG-------RTGEEFDNEVT 1044 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG +Y+LKL H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ Sbjct: 1045 VGIMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHT 1104 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE+QAL L + + N + Sbjct: 1105 LQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDNNQE 1164 Query: 1371 SAKMEEIPDFNKCEL 1385 E D ++ E+ Sbjct: 1165 VKFKELAEDDDEIEV 1179 >gi|148267002|ref|YP_001245945.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus JH9] gi|189043871|sp|A5IQ96|RPOB_STAA9 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|147740071|gb|ABQ48369.1| DNA-directed RNA polymerase, beta subunit [Staphylococcus aureus subsp. aureus JH9] Length = 1183 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 444/964 (46%), Positives = 597/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMYQSN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLSDLTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 248/1145 (21%), Positives = 417/1145 (36%), Gaps = 104/1145 (9%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL++VGR K N Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 419 RLNLDTPDDVRHI-RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +L+L + + +I+V+ + + + E+ + + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 +E + D + + + F S++ + S Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRT----------TTVIGNAFPDSEVKCITPADIIASMSYF 387 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 LS +G +R V + + + S+ + Sbjct: 388 FNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTESITPQQL 447 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 I R V + + + S L E + Sbjct: 448 I--NIRPVIASIK----EFFGSSQLSQFMYQSNPLSDLTHKRRLSALGPGGLTRERAQME 501 Query: 658 REKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + + + I + + S + + + + ++ Sbjct: 502 VRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTHAITDQID 561 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 + A + +VA+ + + + + K + + Sbjct: 562 YLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMAKEKMDYMDVSPKQ 616 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 + +D ++ A+ A G + + ++ Sbjct: 617 VVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAAITAK 676 Query: 837 DVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 H+E E++ R G + ++ I+ VG V Sbjct: 677 HRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCYNQRPIVAVGDVVE 736 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 +IL + M ++ + D + +S +V ++ Sbjct: 737 YNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MSERLVKDDVYTSIH 790 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 I++ E + E + RD + +N+ R + G G K T Sbjct: 791 IEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVKDGDILVGKVTPKG 849 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD-MPP 1068 ++ R F + +V+ + K+ + GDD + P Sbjct: 850 VTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVKVFNREEGDDTLSP 903 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLGVP Sbjct: 904 GVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVP 963 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDY 1188 SRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 964 SRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST-------------------- 1003 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 + A + G +++LYDG TGEPFD Sbjct: 1004 -----IEEAGMARDG-----------------------------KTVLYDGRTGEPFDNR 1029 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA Sbjct: 1030 ISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1089 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 Y LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q+LGL + + + + Sbjct: 1090 YTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDEQD 1149 Query: 1369 KNSAK 1373 Sbjct: 1150 NEIEM 1154 >gi|329313262|gb|AEB87675.1| DNA-directed RNA polymerase subunit beta [Staphylococcus aureus subsp. aureus T0131] Length = 1183 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 441/964 (45%), Positives = 597/964 (61%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQ SQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQSSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +T+ RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTNKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEE+E ARDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GAE Sbjct: 775 IMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNR 894 Query: 948 HGID 951 D Sbjct: 895 EEGD 898 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 247/1145 (21%), Positives = 418/1145 (36%), Gaps = 104/1145 (9%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL++VGR K N Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 419 RLNLDTPDDVRHI-RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 +L+L + + +I+V+ + + + E+ + + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 +E + D + + + F S++ + S Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRT----------TTVIGNAFPDSEVKCITPADIIASMSYF 387 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 LS +G +R V + + + S+ + Sbjct: 388 FNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTESITPQQL 447 Query: 598 IETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 I R V + + + + + L E + Sbjct: 448 I--NIRPVIASIK----EFFGSSQSSQFMDQANPLAELTNKRRLSALGPGGLTRERAQME 501 Query: 658 REKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + + + I + + S + + + + ++ Sbjct: 502 VRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTHAITDQID 561 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 + A + +VA+ + + + + K + + Sbjct: 562 YLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMAKEKMDYMDVSPKQ 616 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 + +D ++ A+ A G + + ++ Sbjct: 617 VVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAAITAK 676 Query: 837 DVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 H+E E++ R G + ++ I+ VG V Sbjct: 677 HRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCYNQRPIVAVGDVVE 736 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 +IL + M ++ + D + +S +V ++ Sbjct: 737 YNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVI-----MSERLVKDDVYTSIH 790 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 I++ E + E + RD + +N+ R + G G K T Sbjct: 791 IEEYESEARDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVKDGDILVGKVTPKG 849 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDD-MPP 1068 ++ R F + +V+ + K+ + GDD + P Sbjct: 850 VTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVKVFNREEGDDTLSP 903 Query: 1069 GVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVP 1128 GV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG P+DI+LNPLGVP Sbjct: 904 GVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVP 963 Query: 1129 SRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDY 1188 SRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 964 SRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST-------------------- 1003 Query: 1189 DDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRP 1248 + A + G +++LYDG TGEPFD Sbjct: 1004 -----IEEAGMARDG-----------------------------KTVLYDGRTGEPFDNR 1029 Query: 1249 VTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAA 1308 ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA Sbjct: 1030 ISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1089 Query: 1309 YVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368 Y LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q+LGL + + + + Sbjct: 1090 YTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDEQD 1149 Query: 1369 KNSAK 1373 Sbjct: 1150 NEIEM 1154 >gi|323490606|ref|ZP_08095811.1| DNA-directed RNA polymerase subunit beta [Planococcus donghaensis MPA1U2] gi|323395698|gb|EGA88539.1| DNA-directed RNA polymerase subunit beta [Planococcus donghaensis MPA1U2] Length = 1184 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 441/964 (45%), Positives = 599/964 (62%), Gaps = 79/964 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ F + E++D+P+LIE+Q +SY+ FL EGL+ F+ Sbjct: 1 MVGQLVQYGQHRQRRSFSRISEVLDLPNLIEIQSSSYEWFL----------EEGLREMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+ VD+ RD+TYA PL++ +RL K Sbjct: 51 DISPIEDFTGNLSLEFVDYSLAEPKYPVDESKERDVTYAAPLRVKVRLH---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTFVI G +R++VSQL RSP ++F + +GK + Sbjct: 102 ETDEVKEQDVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYFH---DKTDKNGKKGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+++VRIDR RK+PVT L ALG S+ EI+ Sbjct: 159 GATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEIIDLLGDNEYLQ 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK---- 294 + + L+ + GE +ES K L K + Sbjct: 219 NTLEKDNTESTDKALL------EIYERLRPGEPPTVESAKSLLYSRFFDPKRYDLANVGR 272 Query: 295 ----FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE + + ETGEI +EAG +ID + L+ + + Sbjct: 273 YKMNKKLHIKNRLFNQTIAETLADPETGEILVEAGTLIDRRVLDRL------------IP 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++ N + + L I Y + Sbjct: 321 NLENGVGFHTVSQVGGVLEGEVTLQSI--------------------------KIYAPNN 354 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + ++ + N D ++H+ DII+ I +L G G DDID+LGNRR+RSVGE+ Sbjct: 355 EDQKEITVISNAYIEDKIKHVTPADIISSISYFFNLLYGVGNTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSINDTQAIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL+++L++FA Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINTLSTFA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G VT + YL+A EE+N +AQANS L++DGSF EE + R Sbjct: 535 KVNKFGFIETPYRRVDAETGVVTKHIDYLTADEEDNYVVAQANSKLNDDGSFVEEGIVAR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 GE + R ID++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPLL EA Sbjct: 595 FRGENTIYKRGSIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLLNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEG-DLDPSTSGVDIYRLMKF 767 PFVGTGME + A+ SGAA+VAK GIVE V+A I +R +E D + +D Y+L KF Sbjct: 655 PFVGTGMEHLAARDSGAAVVAKNDGIVEFVEAKEIAVRRIEVVDGNEVRGDLDTYKLQKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ T NQRP+VKVGD V + DI+ADGPS + G++ALGRN+LVAFM W G+N+ED++ Sbjct: 715 VRSNQGTSYNQRPIVKVGDRVSKRDILADGPSMERGEMALGRNVLVAFMTWDGFNYEDAI 774 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TS+HIEE+E +RDTKLGPEEITRDIPNV E+ L+N+D+ GII VGAE Sbjct: 775 IMSERLVKDDVYTSVHIEEYESDSRDTKLGPEEITRDIPNVGEDALRNLDDRGIIRVGAE 834 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV+IFNR Sbjct: 835 VKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKIFNR 894 Query: 948 HGID 951 D Sbjct: 895 EDGD 898 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 252/1059 (23%), Positives = 400/1059 (37%), Gaps = 131/1059 (12%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D + +N Y++NTL D + ALL+IY +RPG+ T A+S+ FFD +YDL Sbjct: 208 IDLLGDNEYLQNTLEKDNTESTDKALLEIYERLRPGEPPTVESAKSLLYSRFFDPKRYDL 267 Query: 409 STVG----RVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRV 464 + VG K++++ L + + I+ L + + I NL N Sbjct: 268 ANVGRYKMNKKLHIKNRLFNQTIAETLADPETGEILVEAGTLIDRRVLDRLIPNLENGVG 327 Query: 465 RSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQ 524 + G + ++ ++ D + + + V S +S Sbjct: 328 FHTVSQVGGVLE-GEVTLQSIKIYAPNNEDQKEITVISNAYIEDKIKHVTPADIISSISY 386 Query: 525 LEEHVN---SLSRITHT--RRLSALGQ-------GGVARARAGVEMRDVHPTHYGRICPA 572 + + I H RRL ++G+ G++R V R + Sbjct: 387 FFNLLYGVGNTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSINDTQAIVPQQ 446 Query: 573 ETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANS 632 + I + ++++ + TN + L+ Sbjct: 447 LINIRPVIASIKEFFGSSQLSQF------------MDQTNPLAELT-------------- 480 Query: 633 SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVL 691 L E + + + I + + + Sbjct: 481 ----HKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINTLSTFAKV 536 Query: 692 MGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGD 751 + AE V ++ + A +VA+ + + EG Sbjct: 537 NKFGFIETPYRRVDAETGVVTKHIDYLTADEEDNYVVAQANSKLNDDGS-----FVEEGI 591 Query: 752 LDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 + IY+ + Q V + ++ + Sbjct: 592 VARFRGENTIYKRGSID--YMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPL 649 Query: 812 LVAFMPWHGYNFE---------DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEIT 862 L P+ G E + ++ +V I + EV+ + G + Sbjct: 650 LNPEAPFVGTGMEHLAARDSGAAVVAKNDGIVEFVEAKEIAVRRIEVVDGNEVRGDLDTY 709 Query: 863 RDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAV 922 + V + ++ I+ VG V+ DIL + M +L A Sbjct: 710 KLQKFVRSNQGTSYNQRPIVKVGDRVSKRDILADGPS-MERGEMALGRNVLVAFMTWDGF 768 Query: 923 DVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI 982 + D + +S +V ++ I++ E + E + RD + RN+ Sbjct: 769 NYEDAII-----MSERLVKDDVYTSVHIEEYESDSRDTKLGPEEITRDIPNVGEDALRNL 823 Query: 983 YSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQY 1042 R I G G K T ++ R F + +V+ + Sbjct: 824 DDR-GIIRVGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGA 882 Query: 1043 ETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSR 1102 KI + GD++PPGV ++V+ ++ KR I GDKMAGRHGNKG++SR Sbjct: 883 GGIV------LDVKIFNREDGDELPPGVNQLVRAYIVQKRKISVGDKMAGRHGNKGVISR 936 Query: 1103 ILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKAN 1162 ILP EDMPF+ DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D Sbjct: 937 ILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMASRSLGIHMASSVFDGANE 996 Query: 1163 GDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSM 1222 D+ T ++DG Sbjct: 997 EDVLETMEESGMPRDGK----------------------------TILYDG--------- 1019 Query: 1223 LRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQP 1282 +GE FD V+VG +YM+KL HMV DK++ARSTG YSLVTQQP Sbjct: 1020 -----------------RSGEAFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQP 1062 Query: 1283 LGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETG 1342 LGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDVVGR + YE+IV G E Sbjct: 1063 LGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGESVPEPS 1122 Query: 1343 TPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 PESF VL+KE+Q+LG+ + + + + + + Sbjct: 1123 VPESFKVLIKELQSLGMDVKMLTIDDEEIELRDLDEEED 1161 >gi|331702087|ref|YP_004399046.1| DNA-directed RNA polymerase subunit beta [Lactobacillus buchneri NRRL B-30929] gi|329129430|gb|AEB73983.1| DNA-directed RNA polymerase subunit beta [Lactobacillus buchneri NRRL B-30929] Length = 1202 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 582/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + E++D+P+LIE+Q SY+ FL EGL+ F Sbjct: 1 MAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTNSYNWFLH----------EGLKETFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ VD+ + Y+ PL ITL+L Sbjct: 51 GIMPIDDFQGKLSLEFVDYQLLTPKYTVDEAREHEANYSAPLHITLKLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG+++ DK + +G+ + Sbjct: 102 ETGEIKTQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYHADKDK---NGRDSF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+K+I +VRIDR RK+P+T + ALG S+ EI+ Sbjct: 159 GTTVIPNRGAWLEFETDAKNIAYVRIDRTRKIPLTELIRALGFGSDSEIIDILGDNDSLG 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + D V + + GE +S + L + K + +G Sbjct: 219 LTLEKD-VHKDTDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDMAPVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L GL +AE + + +TGE+ + G V+ + ++++ D Y Sbjct: 278 YKTNKKLSLKNRLLGLTLAETLADPDTGEVIAQKGTVVTKDVMKDLAPFLDNDEFKAYTF 337 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + ++ A + + + I +V D Sbjct: 338 TPSDEAVVTEPMT-----------VQIIKVQSVNDPDRV--------------------- 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + P +HI DII+ + +L+ G G+IDDID+LGNRR+RSVGE+ Sbjct: 366 -----VPLIGNDNIPLSFKHITPADIISAMNYFFNLQEGIGSIDDIDHLGNRRIRSVGEL 420 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 421 LQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 480 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+A Sbjct: 481 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA 540 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN YGFIETPYR+V KVT+ + YL+A EE+N IAQANS L++DGSF +V R Sbjct: 541 RVNKYGFIETPYRRVDWTTHKVTDRIDYLTADEEDNFVIAQANSPLNDDGSFVNNIVMAR 600 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 I + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 601 HKSNNIEIGIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHA 660 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTG+E A SG A++ K G VE VDA I +R + LD Y+LMKF+ Sbjct: 661 PLVGTGIEYKAAHDSGVALICKNEGTVEYVDAREIRVRRDDKSLDK-------YKLMKFR 713 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+VKVGD V ++I+ADGPS + G+LALG+N +VAFM W GYNFED++ Sbjct: 714 RSNGGKNYNQRPIVKVGDRVDADEILADGPSMEGGELALGQNPVVAFMTWQGYNFEDAIA 773 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 ISER+V +DV+TSIHIEE+E RDTKLGPEE+TR+IPNV E+ LKN+DE G + +GAEV Sbjct: 774 ISERLVKDDVYTSIHIEEYESETRDTKLGPEEMTREIPNVGEDALKNLDEDGTVRIGAEV 833 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 + GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G + DV+IF R Sbjct: 834 HDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKIFTRE 893 Query: 949 GID 951 D Sbjct: 894 NGD 896 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 263/1107 (23%), Positives = 401/1107 (36%), Gaps = 172/1107 (15%) Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D N I + E F S+ I IL + ++ + Sbjct: 175 DAKNIAYVRIDRTRKIPLTELIRALGFGSDSEIIDILGDNDSLGLTLEKDVHKDTDDSRV 234 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD------- 423 +++L DIY +RPG+ T + S+ FFD +YD++ VGR K N +L+L Sbjct: 235 EESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDMAPVGRYKTNKKLSLKNRLLGLT 294 Query: 424 -------------TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + K+ + + L + T D ++ Sbjct: 295 LAETLADPDTGEVIAQKGTVVTKDVMKDLAPFLDNDEFKAYTFTPSDEAVVTEP-MTVQI 353 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQD----LINAKPVVSAVCEFFCSSQLSQLE 526 +K Q R+ I + + P D + + + L Sbjct: 354 IKVQSVNDPDRVVPLIGNDNIPLSFKHITPADIISAMNYFFNLQEGIGSIDDIDHLGNRR 413 Query: 527 EHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSL 586 R + + V + + V P I P S G Sbjct: 414 IRSVGELLQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLS 473 Query: 587 TSFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLSAMEEENRYIAQA 630 + N G + R V D T+ E I Sbjct: 474 QFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLI 533 Query: 631 NSSLDEDGSFTEELVFCRCAGEEILVPR--EKIDFIDASPKQVVSIAASLIPFLENDDSN 688 NS + + + ++ID++ A + IA + P +D Sbjct: 534 NSLSSYARVNKYGFIETPYRRVDWTTHKVTDRIDYLTADEEDNFVIAQANSPL---NDDG 590 Query: 689 RVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSV 748 + M R ++ V V+ A+ +E D+ R ++ + Sbjct: 591 SFVNNIVMARHKSNNIEIGIDKVD---YMDVSPKQVVAVATACIPFLENDDSNRALMGAN 647 Query: 749 EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALG 808 QR PLV G + Sbjct: 648 ------------------MQRQAVPLIDPHAPLVGTGI-----------------EYKAA 672 Query: 809 RNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVM-ARDTKLGPEEITRDIPN 867 + VA + + E R+ +D +++++M R + G R I Sbjct: 673 HDSGVALICKNEGTVEYVDAREIRVRRDDKSL----DKYKLMKFRRSNGGKNYNQRPIVK 728 Query: 868 VSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDT 927 V + +D I+ G + G++ +G + E A+ + + Sbjct: 729 VGD----RVDADEILADGPSMEGGELALG-------QNPVVAFMTWQGYNFEDAIAISER 777 Query: 928 SLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLM 987 ++ S + + R E E ++ D++ Sbjct: 778 LVKDDVYTSIHIEEYESETRDTKLGPEEMTREIPNVGEDALKNLDED------------G 825 Query: 988 EILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKS 1047 + G G K T +S R F + +V+ + Sbjct: 826 TVRIGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQ 885 Query: 1048 ILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCE 1107 + KI + GD++ PGV ++V+V++A KR IQ GDKM+GRHGNKG VS ++P E Sbjct: 886 DV------KIFTRENGDELSPGVNKMVRVYIAQKRKIQVGDKMSGRHGNKGTVSVVIPEE 939 Query: 1108 DMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISP 1167 DMPFL DGTPVDI+L+P+GVPSRMN+GQ+ E HLG A LG + + + D + DI Sbjct: 940 DMPFLPDGTPVDIMLSPMGVPSRMNIGQVLELHLGMAARRLGIHVATPVFDGARDKDIW- 998 Query: 1168 LRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMAD 1227 D E A Sbjct: 999 --------------------------------------------DAVKE---------AG 1005 Query: 1228 LDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 + G+ ILYDG TGEPFD+ + VG ++ LKL HMV DK++ARS G YSLVTQQPLGGK+ Sbjct: 1006 MPSDGKYILYDGRTGEPFDKKIAVGVMHYLKLAHMVDDKIHARSIGPYSLVTQQPLGGKA 1065 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF Sbjct: 1066 QFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESF 1125 Query: 1348 NVLVKEMQALGLSIDLENSRTKNSAKM 1374 VLVKE+Q+LGL + + ++ K Sbjct: 1126 RVLVKELQSLGLDMKVLDASHKEIELR 1152 >gi|110801957|ref|YP_699671.1| DNA-directed RNA polymerase subunit beta [Clostridium perfringens SM101] gi|123145886|sp|Q0SQD6|RPOB_CLOPS RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|110682458|gb|ABG85828.1| DNA-directed RNA polymerase, beta subunit [Clostridium perfringens SM101] Length = 1234 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 430/955 (45%), Positives = 592/955 (61%), Gaps = 65/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K ++ ++P+LIE+Q SY FL + GL F + PI+ F+G Sbjct: 9 KRTRMSFAKVKDVAEMPNLIEIQLDSYKWFL----------DAGLYEVFDDINPISNFTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +LEFV Y D K+ V++C RD TYA PLK+ +RL K +IKEQ Sbjct: 59 NLVLEFVGYTLDMDNIKYSVEECKERDTTYAAPLKVAVRL---------QNKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG++++++ + GK L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNYNVDKT---GKKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ E DS D+I+VRID+ RK+P++ A+G S+ E+L F + + + Sbjct: 167 GAWLEYETDSNDVIYVRIDKTRKLPISILGRAMGFGSDQELLEYFGEEERFKATIEKDNT 226 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD----- 301 L+ K + GE ++S L L K + +G Sbjct: 227 KTKEEALLEIYK------RLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLA 280 Query: 302 ---CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + AEDIV+ TGE+ + G+ I + EEI + I + +L D V I Sbjct: 281 IGLRIANQIAAEDIVDKLTGEVLVAKGEKISRANAEEIQNRGINSVDVLVEDRVIR---I 337 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 D +K + ++ + + + Y + ++ Sbjct: 338 IGNHFVDIHKCVD----FDISDLNIRELVHYPTLREILDN-------YSDEETIKEEIKK 386 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 + P +HI K+DI A I + L G +DDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 387 NMTRLIP---KHIIKDDIFATISYQIGLAYNIGYVDDIDHLGNRRLRSVGELLQNQFRIG 443 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L RMER +KER++ D +++ PQ LIN +PV +A+ EFF SSQLSQ + N LS +TH Sbjct: 444 LSRMERVVKERMTIQDQEAITPQQLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHK 503 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A+VN YGFI Sbjct: 504 RRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFI 563 Query: 599 ETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 ETPYR V +VT ++ Y +A EE+ +AQAN LDE+G F ++ V R GE ++V Sbjct: 564 ETPYRVVDKSEGRVTGEIRYFTADEEDQYLVAQANEPLDENGCFIDKKVTVRDKGEVLVV 623 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P + +D +D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK AP VGTG+E Sbjct: 624 PSKDVDLMDVSPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPYAPIVGTGIE 683 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A SG AK AG V V A + ++ GVD YRL+KF+RSNQ TC+ Sbjct: 684 YKAAVDSGVLPKAKNAGEVVYVSANEVRVKRE------LDGGVDTYRLLKFKRSNQGTCI 737 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP+V GD V + +++ADGPSTDLG++ALG+N+ + F+ W GYN+ED+MLISE +V E Sbjct: 738 NQRPIVAKGDWVLKGEVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVRE 797 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEE+E ARDTKLGPEEITRDIPNVSE+ LK+IDE GII +GAEV GDILVG Sbjct: 798 DVFTSIHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDERGIIRIGAEVRSGDILVG 857 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV++F R D Sbjct: 858 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRENGD 912 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 260/1155 (22%), Positives = 419/1155 (36%), Gaps = 140/1155 (12%) Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSDCLC---GLYVAEDIVNGETG----------EIY 321 E G + +G + + + V+ G+ + G + V G ++ Sbjct: 121 EQGTFIINGAERVIVSQLVRSPGVYYNYNVDKTGKKLFSATVIPNRGAWLEYETDSNDVI 180 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 D + + + + ++ + T+ D K +++ALL+IY+ + Sbjct: 181 YVRIDKTRKLPISILGRAMGFGSDQELLEYFGEEERFKATIEKDNTKTKEEALLEIYKRL 240 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 RPG+ T A S+ + LFFD+ +YDLS VGR K N +L + + ++ + + Sbjct: 241 RPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLAIGLRIANQIAAEDIVDKLTG 300 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 ++ + K + + + + NR + SV ++++ R+ R I + Sbjct: 301 EVLVAKGEKISRANAEEIQNRGINSVDVLVED-------RVIRIIGNHFVDIHKCVDFDI 353 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDV 561 +N + V L + I + ++ L + + + Sbjct: 354 SDLN---IRELVHYPTLREILDNYSDEETIKEEI--KKNMTRLIPKHIIKDDIFATISYQ 408 Query: 562 HPTHY--GRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSA 619 Y G + + + V L + + R V + D ++ Sbjct: 409 IGLAYNIGYVDDIDHLGNRRLRSVGELL---QNQFRIGLSRMERVVKERMTIQDQEAITP 465 Query: 620 MEEENRY-IAQAN---------SSLDEDGSFTEELVFCRC---------AGEEILVPREK 660 + N +A A S + + EL R + E Sbjct: 466 QQLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRD 525 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + + L N + + + + ++ TG Sbjct: 526 VHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFIETPYRVVDKSEGRVTGEIRYFT 585 Query: 721 KSSGA---AIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 A + V +G++ S + Sbjct: 586 ADEEDQYLVAQANEPLDENGCFIDKKVTVRDKGEVLVVPSK---------DVDLMDVSPR 636 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV--S 835 Q V + A +L + P G E + ++ + Sbjct: 637 QLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPYAPIVGTGIEYKAAVDSGVLPKA 696 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 ++ +++ EV + G + R + I++ I+ G V G++L Sbjct: 697 KNAGEVVYVSANEVRVKRELDGGVDTYRLLKFKRSNQGTCINQRPIVAKGDWVLKGEVLA 756 Query: 896 GKITPKGESPMTPEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 + + + I E A+ + + +R S + + R Sbjct: 757 DGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVREDVFTSIHIEEYECEARDTK 816 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSS 1010 E E +D DE+ I+ R +IL G+ G L Sbjct: 817 LGPEEITRDIPNVSEDALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLR 875 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 + E R E K+ + GDD+ PGV Sbjct: 876 AIFGEKAR-----------------EVRDTSLRVPHGEAGIIVDVKVFTRENGDDLSPGV 918 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +V+ ++A KR I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSR Sbjct: 919 NELVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSR 978 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MN+GQ+ E HLGWA LG I + + D DI + Sbjct: 979 MNIGQVLEVHLGWAASALGWHIATPVFDGATETDIEDCLEKAGYNRNGKTVL-------- 1030 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 G TGE FD VT Sbjct: 1031 ---------------------------------------RDG-------RTGEEFDNEVT 1044 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG +Y+LKL H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ Sbjct: 1045 VGIMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHT 1104 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE+QAL L + + N + Sbjct: 1105 LQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDNNQE 1164 Query: 1371 SAKMEEIPDFNKCEL 1385 E D ++ E+ Sbjct: 1165 VKFKELAEDDDEIEV 1179 >gi|308070984|ref|YP_003872589.1| DNA-directed RNA polymerase beta chain (RNAP beta subunit) [Paenibacillus polymyxa E681] gi|305860263|gb|ADM72051.1| DNA-directed RNA polymerase beta chain (RNAP beta subunit) [Paenibacillus polymyxa E681] Length = 1187 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 433/967 (44%), Positives = 595/967 (61%), Gaps = 83/967 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++++P+LIE+Q+ SYD FL EGL+ F+ Sbjct: 7 LAGHLVQYGR-RTRRSYARINEVLEVPNLIEIQQKSYDWFL----------EEGLREMFR 55 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G +LEF+ Y PK+ VDD RD+TYA PL++ +RLI K Sbjct: 56 DISPIQDFTGNLILEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLI---------NK 106 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F + + K Y Sbjct: 107 ETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFS---TKVDKNAKTTY 163 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KDII+VRIDR RK+PVT L ALG ++ EIL Sbjct: 164 TATVIPNRGAWLELEMDAKDIIYVRIDRTRKIPVTVLLRALGFGTDAEILDLLGNDEYIR 223 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + L+ + GE +++ K L K Sbjct: 224 NTLDKDNTDSTEKALI------EIYERLRPGEPPTLDNAKSLLVARFFDPKRYDLANVGR 277 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +++ TGEI EAG ++D + L+EI + Sbjct: 278 YKINKKLHIKNRLFNQRLAETLIDTTTGEIIAEAGQMVDRRLLDEILAQLEESVG----- 332 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 R V + D L V P + Sbjct: 333 -------HRTYHVASGVLESNDIPLQTIDVFSPIE----------------------DGK 363 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 V ++ N + V++I DII+ I ++L +G G+ DDID+LGNRR+RSVGE+ Sbjct: 364 VVKLIAN----GNIDKSVKNITPADIISSISYFINLLHGIGSTDDIDHLGNRRLRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLS+ + N Sbjct: 420 LQNQFRIGLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSRFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG+E+RDVHP+HYGR+CP ET EG NIGL++SL++FA Sbjct: 480 PLAELTHKRRLSALGPGGLTRERAGMEVRDVHPSHYGRMCPIETPEGPNIGLINSLSTFA 539 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIE PYR V GKVT + YL+A EE+N +AQAN+ L E+ +F +E+V R Sbjct: 540 RINEYGFIEAPYRWVDPKTGKVTEQIDYLTADEEDNYIVAQANAELTEENTFKDEVVIVR 599 Query: 649 CAGEEILVPR---EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 + + ++D++D SPKQVVS+A +LIPFLENDDSNR LMG NMQRQAVPLL Sbjct: 600 YNKQSDNIIPMASSRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLI 659 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPS-TSGVDIYRL 764 ++P VGTGME AK SG +V+K G++E+ A I +R +E + Y+L Sbjct: 660 PKSPLVGTGMEHKSAKDSGVCVVSKYNGVIERSSANEIWLRRIETVDGAEVKGDIVKYKL 719 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 KF RSNQ TC+NQRP+V GD V+ DI+ADGPST++G+LALGRN++VAFM W GYN+E Sbjct: 720 HKFMRSNQGTCINQRPIVNRGDIVKVGDILADGPSTEMGELALGRNVVVAFMTWEGYNYE 779 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 D++L+SE++V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV EE L+N+DE GII + Sbjct: 780 DAILLSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRI 839 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 GAE+ GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G VVDV++ Sbjct: 840 GAEIGAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKV 899 Query: 945 FNRHGID 951 F R D Sbjct: 900 FTRENGD 906 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 185/527 (35%), Positives = 264/527 (50%), Gaps = 67/527 (12%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + I++ I+ G V GDIL + + + ++ A Sbjct: 712 GDIVKYKLHKFMRSNQGTCINQRPIVNRGDIVKVGDILADGPSTE-MGELALGRNVVVAF 770 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D L +S +V ++ I++ E + E + RD + Sbjct: 771 MTWEGYNYEDAIL-----LSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE 825 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 RN+ R I G +G K T ++ R F + +V+ Sbjct: 826 EALRNLDER-GIIRIGAEIGAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSL 884 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 + + + K+ + GD++PPGV ++V+V++A KR I GDKMAGRHGN Sbjct: 885 RVPHGTDGIVVDV------KVFTRENGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGN 938 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG+V+RILP EDMPFL DGTPV +VLNPLGVPSRMN+GQ+ E HLG A + LG + + + Sbjct: 939 KGVVARILPEEDMPFLPDGTPVQVVLNPLGVPSRMNIGQVLEVHLGMAAMRLGIHVATPV 998 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 D D VFD Sbjct: 999 FDGAKEYD---------------------------------------------VFD---- 1009 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 + A + +G+++LYDG TG+ F+R VTVG ++M+KL HMV DK++ARSTG YS Sbjct: 1010 -----TMEEAGMQRNGKTVLYDGRTGDRFEREVTVGVMHMIKLAHMVDDKIHARSTGPYS 1064 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 LVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YESIV G Sbjct: 1065 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGE 1124 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKC 1383 + E G PESF VL+KE+Q+LG+ + + + + E + + Sbjct: 1125 NVPEPGVPESFKVLIKELQSLGMDVKILSEDEQEIEMRELDDEDDTT 1171 >gi|169344026|ref|ZP_02865015.1| DNA-directed RNA polymerase, beta subunit [Clostridium perfringens C str. JGS1495] gi|169297850|gb|EDS79946.1| DNA-directed RNA polymerase, beta subunit [Clostridium perfringens C str. JGS1495] Length = 1234 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 430/955 (45%), Positives = 592/955 (61%), Gaps = 65/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K ++ ++P+LIE+Q SY FL + GL F + PI+ F+G Sbjct: 9 KRTRMSFAKVKDVAEMPNLIEIQLDSYKWFL----------DAGLYEVFDDINPISNFTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +LEFV Y D K+ V++C RD TYA PLK+ +RL K +IKEQ Sbjct: 59 NLVLEFVGYTLDMDNIKYSVEECKERDTTYAAPLKVAVRL---------QNKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG++++++ + GK L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNYNVDKT---GKKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ E DS D+I+VRID+ RK+P++ A+G S+ E+L F + + + Sbjct: 167 GAWLEYETDSNDVIYVRIDKTRKLPISILGRAMGFGSDQELLEYFGEEERFKATIEKDNT 226 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD----- 301 L+ K + GE ++S L L K + +G Sbjct: 227 KTKEEALLEIYK------RLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLS 280 Query: 302 ---CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + AEDIV+ TGE+ + G+ I + EEI + I + +L D V I Sbjct: 281 IGLRIANQIAAEDIVDKLTGEVLVAKGEKISRANAEEIQNRGINSVDVLVEDRVIR---I 337 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 D +K + ++ + + + Y + ++ Sbjct: 338 IGNHFVDIHKCVD----FDISDLNIRELVHYPTLREILDN-------YSDEETIKEEIKK 386 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 + P +HI K+DI A I + L G +DDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 387 NMTRLIP---KHIIKDDIFATISYQIGLAYNIGYVDDIDHLGNRRLRSVGELLQNQFRIG 443 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L RMER +KER++ D +++ PQ LIN +PV +A+ EFF SSQLSQ + N LS +TH Sbjct: 444 LSRMERVVKERMTIQDQEAITPQQLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHK 503 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A+VN YGFI Sbjct: 504 RRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFI 563 Query: 599 ETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 ETPYR V +VT ++ Y +A EE+ +AQAN LDE+G F ++ V R GE ++V Sbjct: 564 ETPYRVVDKSEGRVTGEIRYFTADEEDQYLVAQANEPLDENGCFIDKKVTVRDKGEVLVV 623 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P + +D +D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK AP VGTG+E Sbjct: 624 PSKDVDLMDVSPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPYAPIVGTGIE 683 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A SG AK AG V V A + ++ GVD YRL+KF+RSNQ TC+ Sbjct: 684 YKAAVDSGVLPKAKNAGEVVYVSANEVRVKRE------LDGGVDTYRLLKFKRSNQGTCI 737 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP+V GD V + +++ADGPSTDLG++ALG+N+ + F+ W GYN+ED+MLISE +V E Sbjct: 738 NQRPIVAKGDWVLKGEVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVRE 797 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEE+E ARDTKLGPEEITRDIPNVSE+ LK+IDE GII +GAEV GDILVG Sbjct: 798 DVFTSIHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDERGIIRIGAEVRSGDILVG 857 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV++F R D Sbjct: 858 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRENGD 912 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 260/1155 (22%), Positives = 420/1155 (36%), Gaps = 140/1155 (12%) Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSDCLC---GLYVAEDIVNGETG----------EIY 321 E G + +G + + + V+ G+ + G + V G ++ Sbjct: 121 EQGTFIINGAERVIVSQLVRSPGVYYNYNVDKTGKKLFSATVIPNRGAWLEYETDSNDVI 180 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 D + + + + ++ + T+ D K +++ALL+IY+ + Sbjct: 181 YVRIDKTRKLPISILGRAMGFGSDQELLEYFGEEERFKATIEKDNTKTKEEALLEIYKRL 240 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 RPG+ T A S+ + LFFD+ +YDLS VGR K N +L++ + ++ + + Sbjct: 241 RPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLSIGLRIANQIAAEDIVDKLTG 300 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 ++ + K + + + + NR + SV ++++ R+ R I + Sbjct: 301 EVLVAKGEKISRANAEEIQNRGINSVDVLVED-------RVIRIIGNHFVDIHKCVDFDI 353 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDV 561 +N + V L + I + ++ L + + + Sbjct: 354 SDLN---IRELVHYPTLREILDNYSDEETIKEEI--KKNMTRLIPKHIIKDDIFATISYQ 408 Query: 562 HPTHY--GRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSA 619 Y G + + + V L + + R V + D ++ Sbjct: 409 IGLAYNIGYVDDIDHLGNRRLRSVGELL---QNQFRIGLSRMERVVKERMTIQDQEAITP 465 Query: 620 MEEENRY-IAQAN---------SSLDEDGSFTEELVFCRC---------AGEEILVPREK 660 + N +A A S + + EL R + E Sbjct: 466 QQLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRD 525 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 + + L N + + + + ++ TG Sbjct: 526 VHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFIETPYRVVDKSEGRVTGEIRYFT 585 Query: 721 KSSGA---AIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 A + V +G++ S + Sbjct: 586 ADEEDQYLVAQANEPLDENGCFIDKKVTVRDKGEVLVVPSK---------DVDLMDVSPR 636 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV--S 835 Q V + A +L + P G E + ++ + Sbjct: 637 QLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPYAPIVGTGIEYKAAVDSGVLPKA 696 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 ++ +++ EV + G + R + I++ I+ G V G++L Sbjct: 697 KNAGEVVYVSANEVRVKRELDGGVDTYRLLKFKRSNQGTCINQRPIVAKGDWVLKGEVLA 756 Query: 896 GKITPKGESPMTPEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 + + + I E A+ + + +R S + + R Sbjct: 757 DGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVREDVFTSIHIEEYECEARDTK 816 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSS 1010 E E +D DE+ I+ R +IL G+ G L Sbjct: 817 LGPEEITRDIPNVSEDALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLR 875 Query: 1011 DLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 + E R E K+ + GDD+ PGV Sbjct: 876 AIFGEKAR-----------------EVRDTSLRVPHGEAGIIVDVKVFTRENGDDLSPGV 918 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +V+ ++A KR I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSR Sbjct: 919 NELVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSR 978 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 MN+GQ+ E HLGWA LG I + + D DI + Sbjct: 979 MNIGQVLEVHLGWAASALGWHIATPVFDGATETDIEDCLEKAGYNRNGKTVL-------- 1030 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 G TGE FD VT Sbjct: 1031 ---------------------------------------RDG-------RTGEEFDNEVT 1044 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VG +Y+LKL H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ Sbjct: 1045 VGIMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHT 1104 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE+QAL L + + N + Sbjct: 1105 LQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDNNQE 1164 Query: 1371 SAKMEEIPDFNKCEL 1385 E D ++ E+ Sbjct: 1165 VKFKELAEDDDEIEV 1179 >gi|306432036|emb|CBK13147.2| RNA polymerase beta subunit [Paenibacillus anaericanus] gi|306432038|emb|CBK13148.2| RNA polymerase beta subunit [Paenibacillus ginsengisoli] Length = 1114 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 439/957 (45%), Positives = 598/957 (62%), Gaps = 82/957 (8%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R+ + + E+++IP+LIE+Q+ SY+ FL EGL+ F + PI F+G Sbjct: 3 RRTRRSYARINEVLEIPNLIEIQQKSYEWFL----------EEGLREMFHDISPIQDFTG 52 Query: 71 AAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSI 130 +LEF+ Y PK+ VDD RD+TYA PL++ +RLI K ++KEQ + Sbjct: 53 NLVLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLI---------NKETGEVKEQEV 103 Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190 +MGD PLMT+ GTF+I G +R++VSQL RSP ++F+ + +GK YA +IP++G Sbjct: 104 FMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFN---TKVDKNGKKTYAATVIPNRGA 160 Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPL 249 W+++E D+KDI++VRIDR RK+PVT L +LG ++ EIL D Sbjct: 161 WLELETDAKDIVYVRIDRTRKIPVTVLLRSLGFGTDAEILDLLGNDEYIRNTLDKDNTDS 220 Query: 250 SAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVK--------FLGITS 300 + L+ + GE +++ K L K + Sbjct: 221 TEKALI------EIYERLRPGEPPTLDNAKSLLVARFFDPKRYDLANVGRYKVNKKLHIK 274 Query: 301 DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN 360 + L +AE +++ TGEI EAG ++D + L+EI + + N +N Sbjct: 275 NRLFNQRLAESLIDISTGEIIAEAGQMVDRRLLDEI------------LPYLENGVGFKN 322 Query: 361 TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL 420 V + D D L + P + V +V N Sbjct: 323 YHVANGVLDANDVPLQTIDIFSPIE----------------------DGKVVKVIANC-- 358 Query: 421 NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL 480 + V+HI DII+ I ++L +G G+ DDID+LGNRR+RSVGE+L+NQ+R+GL Sbjct: 359 --NIDKSVKHITPADIISSISYFLNLLHGIGSTDDIDHLGNRRLRSVGELLQNQFRIGLS 416 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 RMER ++ER+S D + + PQ LIN +PV++++ EFF SSQLSQ + N L+ +TH RR Sbjct: 417 RMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRR 476 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 LSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL++FAR+N YGFIE Sbjct: 477 LSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGFIEA 536 Query: 601 PYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA---GEEIL 655 PYR V KVT+ + Y++A EE+N IAQAN+ L+EDG+F +E V R + Sbjct: 537 PYRWVDPKTAKVTDQIAYVTADEEDNYIIAQANAILNEDGTFQDENVIVRYNKQADNILT 596 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 +P +++D++D SPKQVVS+A +LIPFLENDDSNR LMG NMQRQAVPLL +AP VGTGM Sbjct: 597 MPSDRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVGTGM 656 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPS-TSGVDIYRLMKFQRSNQNT 774 E AK SG IV+K GI+E+ A I +R +E + ++L KF RSNQ T Sbjct: 657 EHKSAKDSGVCIVSKYDGIIERSAANEIWLRRIETVDGKEVKGDLVKHKLHKFMRSNQGT 716 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C+NQRP+VK GD V+ DI+ADGPST++G+LALGRN++VAFM W GYN+ED++L+SE++V Sbjct: 717 CINQRPIVKHGDVVKAGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSEKLV 776 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV EE L+N+DE GII VGAE+ GDIL Sbjct: 777 KEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRVGAEIGAGDIL 836 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 VGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G VVDV++F R D Sbjct: 837 VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFTRENGD 893 Score = 463 bits (1190), Expect = e-127, Method: Composition-based stats. Identities = 238/1015 (23%), Positives = 383/1015 (37%), Gaps = 126/1015 (12%) Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 D + N+ YIRNTL D + AL++IY +RPG+ T A+S+ FFD Sbjct: 201 DLLGNDEYIRNTLDKDNTDSTEKALIEIYERLRPGEPPTLDNAKSLLVARFFDPK----- 255 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 R + + + + + L+D+ G+ + + R + + Sbjct: 256 ---RYDLANVGRYKVNKKLHIKNRLFNQRLAESLIDISTGEIIAEAGQMVDRRLLDEILP 312 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 L+N + + D + + ++ ++ + Sbjct: 313 YLENGVGFKNYHVANGVL--------------DANDVPLQTIDIFSPIEDGKVVKVIANC 358 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N + H + H G E L+ Sbjct: 359 NIDKSVKHITPADIISSISYFLNLLHGIGSTDDIDHLGNRRLRSVGELLQNQFRIGLSRM 418 Query: 590 ARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRC 649 RV + V + ++ + A +E +S L + T L Sbjct: 419 ERVVRE-RMSIQDANVITPQALINIRPVIASIKE----FFGSSQLSQFMDQTNPLAELTH 473 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 + + + + +V + S + ++ + + E Sbjct: 474 KRRLSALGPGGLTR-ERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYG 532 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIR---IVIRSVEGDLDPSTSGVDIYRLMK 766 F+ V K AK + V A +I L+ + D +++ Sbjct: 533 FIEAPYRWVDPK------TAKVTDQIAYVTADEEDNYIIAQANAILNEDGTFQDENVIVR 586 Query: 767 FQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDL-------------GDLALGRNMLV 813 + + N V D + + +L+ Sbjct: 587 YNKQADNILTMPSDRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLI 646 Query: 814 AFMPWHGYNFE-------DSMLISER--MVSEDVFTSIHIEEFEVMARDTKLGPEEITRD 864 P G E ++S+ ++ I + E + G + Sbjct: 647 PKAPLVGTGMEHKSAKDSGVCIVSKYDGIIERSAANEIWLRRIETVDGKEVKGDLVKHKL 706 Query: 865 IPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDV 924 + I++ I+ G V GDIL + + + ++ A + + Sbjct: 707 HKFMRSNQGTCINQRPIVKHGDVVKAGDILADGPSTE-MGELALGRNVVVAFMTWEGYNY 765 Query: 925 RDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYS 984 D L +S +V ++ I++ E + E + RD + RN+ Sbjct: 766 EDAIL-----LSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDE 820 Query: 985 RLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYET 1044 R I G +G K T ++ R F + +V+ + + Sbjct: 821 R-GIIRVGAEIGAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDG 879 Query: 1045 SKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRIL 1104 + K+ + GD++PPGV ++V+V++A KR I GDKMAGRHGNKG+V+RIL Sbjct: 880 IVVDV------KVFTRENGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARIL 933 Query: 1105 PCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGD 1164 P EDMPF+ DGTPV +VLNPLGVPSRMN+GQ+ E HLG A + LG + + + D + D Sbjct: 934 PEEDMPFMPDGTPVQVVLNPLGVPSRMNIGQVLEIHLGMAALRLGIHVATPVFDGASEYD 993 Query: 1165 ISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLR 1224 VFD + Sbjct: 994 ---------------------------------------------VFD---------AME 999 Query: 1225 MADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLG 1284 A + +G+++LYDG TG+ F+R VTVG ++M+KL HMV DK++ARSTG YSLVTQQPLG Sbjct: 1000 EAGMQRNGKTVLYDGRTGDRFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLG 1059 Query: 1285 GKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTF 1339 GK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YESIV G + Sbjct: 1060 GKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVP 1114 >gi|41017746|sp|Q8GCR6|RPOB1_ENTFC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|27372991|gb|AAO00728.1| DNA-dependent RNA polymerase subunit beta [Enterococcus faecium] Length = 1208 Score = 848 bits (2192), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 54 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETLAP--------FIDN 332 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N+ Y + + + +V P D Sbjct: 333 GLNSGTYYPSEDGV----VTDPMTVQVIKVFSPRDP------------------------ 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 365 --EREVNVIGNGYPEAAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 543 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 603 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEYVDASEIRVRRDNGALDK-------YDVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGVTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 175/504 (34%), Positives = 235/504 (46%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V G L + + M + +L + + D + Sbjct: 728 IVHLGEKVEKGVTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 778 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 779 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 830 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 831 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 889 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 890 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 944 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 945 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 994 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 995 ------------------SDEDVWETVREAGMASDAKTVLYDG----------------- 1019 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1020 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1070 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1071 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1130 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + Sbjct: 1131 VKELQSLGLDMRVLDIEETEIELR 1154 >gi|315150845|gb|EFT94861.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0012] Length = 1207 Score = 848 bits (2192), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 593/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 54 DILPIDDFQGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKSQEVFFGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFGIFGDSESLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTIEKD-LHKNASDSRTEEGLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQIMETL-------------- 326 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 YI N L + +DA++ + T V + + Sbjct: 327 ----GEYIDNGLNSVTYYPSEDAVV--------TEPMTIQVIQVLSPKDP---------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N D V+ +R DI+A + +L G +DDID+LGNRR+RSVGE+ Sbjct: 365 --ERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ V YL+A E++ +AQANS L+EDG+F ++V R Sbjct: 543 KVNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL++ + Sbjct: 603 LQSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRS 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEISVRRDNGALDK-------YMVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 175/499 (35%), Positives = 237/499 (47%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + E M + +L A + + D + V V Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKDDVY 786 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + ++L G+ Sbjct: 787 TSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVGKVT 846 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 847 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 889 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 890 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 949 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 950 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA--------------- 994 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D+ V + T ++DG Sbjct: 995 -------------TDEDVWETVREAGMASDAKTVLYDG---------------------- 1019 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD ++VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1020 ----RTGEPFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1075 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1135 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + Sbjct: 1136 SLGLDMRVLDIEEAEIELR 1154 >gi|254556009|ref|YP_003062426.1| DNA-directed RNA polymerase subunit beta [Lactobacillus plantarum JDM1] gi|254044936|gb|ACT61729.1| DNA-directed RNA polymerase subunit beta [Lactobacillus plantarum JDM1] Length = 1204 Score = 848 bits (2191), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 586/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y+ PK+ V++ D Y+ PL +TLRL Sbjct: 54 DIMPIDDFAGKLSLEFVDYQLLEPKYTVEEAREHDANYSAPLHVTLRLT---------NH 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F+ + + +G+ Y Sbjct: 105 ETGEIKSQDVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFNEELDK---NGRPSY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+K++ +VRIDR RK+P+T + ALG S++ ++ Sbjct: 162 GTTVIPNRGAWLELETDAKNVSYVRIDRTRKIPLTELVRALGYGSDDDVIDMLGETDSLM 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 + + D V + + GE +S + L + K Sbjct: 222 LTLEKD-VHKNTDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDFAPVGR 280 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 V L +AE + + +TGE+ + VID+ + ++ RD Sbjct: 281 YKVNKKLSMKTRLMDQTLAETLADPDTGEVIAQKDTVIDKNVMAKLSPYLERDDFKTVTY 340 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + ++ A + N +V L + +V D Sbjct: 341 TPSDEAVVTNPMV-----------LQVVKVYSQNDP------------------------ 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N + +HI DIIA I +L+ G G+ DDID+LGNRR+RSVGE+ Sbjct: 366 --EKVVNVIGNGNIDLKFKHIVPADIIASINYFFNLQEGLGSTDDIDHLGNRRIRSVGEL 423 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 424 LQNQFRIGLSRMERVVRERMSIQDAATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 483 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+A Sbjct: 484 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA 543 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN YGFIETPYR+V KVT+ + YL+A EE+ IAQANS L++DGSF E+ V R Sbjct: 544 KVNRYGFIETPYRRVDWTTHKVTDKIDYLAADEEDQFVIAQANSPLNDDGSFVEDTVLAR 603 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + P E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPLL A Sbjct: 604 NKEENLETPIENVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLDPHA 663 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P +GTG+E A SG A++ + G VE VDA + +R +G LD Y+LMKF+ Sbjct: 664 PLIGTGIEYKAAHDSGIALICRHEGTVEYVDAREVRVRRDDGSLD-------TYKLMKFR 716 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+VKVGD V ++++ADGP+ + G+LALG+N LVAFM W+GYNFED+++ Sbjct: 717 RSNGGKNYNQRPIVKVGDHVDNDEVLADGPAMEGGELALGQNPLVAFMTWNGYNFEDAII 776 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 I+ER+V EDV+TSIHIEE+E ARDTKLGPEE+TR+IPNV E+ LKN+DE GII +GAEV Sbjct: 777 INERLVREDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALKNLDEDGIIRIGAEV 836 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R Sbjct: 837 KDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRE 896 Query: 949 GID 951 D Sbjct: 897 NGD 899 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 267/1108 (24%), Positives = 410/1108 (37%), Gaps = 168/1108 (15%) Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 + D N I + E + S+ I +L ++ + Sbjct: 175 LETDAKNVSYVRIDRTRKIPLTELVRALGYGSDDDVIDMLGETDSLMLTLEKDVHKNTDD 234 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 +++L DIY +RPG+ T + S+ FFD +YD + VGR K+N +L++ T Sbjct: 235 SRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDFAPVGRYKVNKKLSMKTRLM 294 Query: 428 VRHIR----KEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 + + D +I + + L ++V ++ + + Sbjct: 295 DQTLAETLADPDTGEVIAQKDTVIDKNVMAKLSPYLERDDFKTVTYTPSDEAVVTNPMVL 354 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT----- 538 + +K + V N + + ++ L Sbjct: 355 QVVKVYSQNDPEKVVNVIGNGNIDLKFKHIVPADIIASINYFFNLQEGLGSTDDIDHLGN 414 Query: 539 RRLSALGQ-------GGVARARAGVEMR-------DVHPTHYGRICPAETSEGHNIGLVS 584 RR+ ++G+ G++R V R V P I P S G Sbjct: 415 RRIRSVGELLQNQFRIGLSRMERVVRERMSIQDAATVTPQQLINIRPVVASIKEFFGSSQ 474 Query: 585 SLTSFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLSAMEEENRYIA 628 + N G + R V D T+ E I Sbjct: 475 LSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIG 534 Query: 629 QANS--SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDD 686 NS S + + R +KID++ A + IA + P NDD Sbjct: 535 LINSLSSYAKVNRYGFIETPYRRVDWTTHKVTDKIDYLAADEEDQFVIAQANSPL--NDD 592 Query: 687 SNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIR 746 + V + + L + A+ +E D+ R ++ Sbjct: 593 GSFVEDTVLARNKEENLETPIENVDYMDVSPKQV----VAVATACIPFLENDDSNRALMG 648 Query: 747 SVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLA 806 + QR PL+ G + Sbjct: 649 AN------------------MQRQAVPLLDPHAPLIGTGI-----------------EYK 673 Query: 807 LGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIP 866 + +A + H E R+ +D + + R + G R I Sbjct: 674 AAHDSGIALICRHEGTVEYVDAREVRVRRDDGSLDTYKL---MKFRRSNGGKNYNQRPIV 730 Query: 867 NVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRD 926 V + ++D ++ G + G++ +G E A+ + + Sbjct: 731 KVGD----HVDNDEVLADGPAMEGGELALG-------QNPLVAFMTWNGYNFEDAIIINE 779 Query: 927 TSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRL 986 +R S + + R E E ++ DE I+ + Sbjct: 780 RLVREDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALKNL-DEDGIIRIGAEVKD 838 Query: 987 MEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSK 1046 +IL G+ G L + E R +V+ + Sbjct: 839 GDILVGKVTPKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGII 887 Query: 1047 SILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPC 1106 + KI + GD++ PGV +V+V++A KR IQ GDKMAGRHGNKG VS ++P Sbjct: 888 QDV------KIFTRENGDELSPGVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSIVVPE 941 Query: 1107 EDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDIS 1166 EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG + + + D + DI Sbjct: 942 EDMPYMPDGTPIDIMLSPMGVPSRMNIGQVLELHLGMAARKLGIHMATPVFDGAQDTDIW 1001 Query: 1167 PLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA 1226 EAI A Sbjct: 1002 --------------------------------------------------EAIRE----A 1007 Query: 1227 DLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGK 1286 +D +SI+YDG TGEPFD+ V VG ++ +KL+HMV DK++ARS G YSLVTQQPLGGK Sbjct: 1008 GVDSDAKSIVYDGRTGEPFDKRVAVGVMHYMKLSHMVDDKIHARSIGPYSLVTQQPLGGK 1067 Query: 1287 SNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPES 1346 + GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PES Sbjct: 1068 AQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPES 1127 Query: 1347 FNVLVKEMQALGLSIDLENSRTKNSAKM 1374 F VLVKE+QALGL + + +S K Sbjct: 1128 FRVLVKELQALGLDMKVLDSEDKEIELR 1155 >gi|259650771|dbj|BAI42933.1| DNA-directed RNA polymerase subunit beta [Lactobacillus rhamnosus GG] Length = 1195 Score = 848 bits (2191), Expect = 0.0, Method: Composition-based stats. Identities = 418/956 (43%), Positives = 580/956 (60%), Gaps = 79/956 (8%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F + PI Sbjct: 3 YGKHRTRRSYARIKEVLDLPNLIEIQTNSYQWFL----------DEGLKEMFDDIMPIDD 52 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 F G LEFV Y+ PK+ V++ D Y+ PL +TLRL +IK Sbjct: 53 FQGKLSLEFVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLT---------NHETGEIKS 103 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F + + + ++ Y +IP+ Sbjct: 104 QDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFHSETDK---NSRVTYGTTVIPN 160 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWC 246 +G W++ E D+KDI +VRIDR RK+P+T + ALG S+ +I++ F + Sbjct: 161 RGAWLEYETDAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKD- 219 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS----- 300 + D + + GE +S + L K + +G Sbjct: 220 VHKNTDDSRTDEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKL 279 Query: 301 ---DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 L +AE + + +TGE+ + G +D + ++++ Sbjct: 280 SLKTRLLNQVLAETLADPDTGEVVAQKGTKVDRQVMDKLAPYL----------------- 322 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 DR D Y+ G ++ +S+ + DK +N Sbjct: 323 -----------DRDDFKTATYQPSDQGVMTDPIELQSIKVYSQVTPDKE---------IN 362 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 + N V+HI D++A + ++L+ G GT+DDID+LGNRR+RSVGE+L+NQ+R+ Sbjct: 363 LIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTVDDIDHLGNRRIRSVGELLQNQFRI 422 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N L +TH Sbjct: 423 GLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGELTH 482 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A VN YGF Sbjct: 483 KRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYAVVNPYGF 542 Query: 598 IETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 IETPYR+V KVT+ + YL+A EE+N +AQANS L++DGSF ++ V R I Sbjct: 543 IETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDDTVLARHKDNNIE 602 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ AP VGTGM Sbjct: 603 ISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPHAPLVGTGM 662 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC 775 E A SG A++A AG VE VDA +I +R +G LD Y+LMKF+RSN Sbjct: 663 EYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALD-------TYKLMKFKRSNAGKN 715 Query: 776 VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835 NQRP+V +GD V ++IIADGP+ G+LALG+N ++AFM W+ YN+ED++++SER+V Sbjct: 716 YNQRPIVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIVLSERLVK 775 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 +DV+TSIHIEE+E ARDTKLGPEE+TR+IPNV EE LK++DE G++ VGAEV GDILV Sbjct: 776 DDVYTSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEVRDGDILV 835 Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 GK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R D Sbjct: 836 GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTREAGD 891 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 235/1073 (21%), Positives = 380/1073 (35%), Gaps = 104/1073 (9%) Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D + I + E F S+ I + + ++ + Sbjct: 170 DAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRT 229 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 +AL DIY +RPG+ T + S+ FFD +YDL++VGR K+N +L+L T + Sbjct: 230 DEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQV 289 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + L + + + ++ R ++ Sbjct: 290 L-----------AETLADPDTGEVVAQKGTKVDRQVMDKLAPYLDRDDFKTATYQPSDQG 338 Query: 491 SSVDI---DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 D S+ + ++ + ++ + S LG Sbjct: 339 VMTDPIELQSIKVYSQVTPDKEINLIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTV 398 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 +R V + + + S+ A V I R V Sbjct: 399 DDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMSIQDTATVTPQQLI--NIRPVVA 456 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + + + L + + + Sbjct: 457 SIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYG 512 Query: 668 PKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 + I + + S V+ + + V ++ + A Sbjct: 513 RMCPIETPEGPNIGLINSLASYAVVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNY 572 Query: 727 IVAKRA----GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 IVA+ VD + + K + C+ Sbjct: 573 IVAQANSPLNDDGSFVDDTVLARHKDNNIEISPDKVDYMDVSPKQVVAVATACIP----- 627 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTS 841 + +D ++ ++ P G E S V + + Sbjct: 628 ----FLENDD--SNRALMGANMQRQAVPLINPHAPLVGTGMEYKAAHDSGTAVLANNAGT 681 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 + + + + + G + + + KN ++ I+ +G V D ++ Sbjct: 682 VEYVDAKQIRVRREDGALDTYKLMKFKRSNAGKNYNQRPIVTIGDHV-DVDEIIADGPAM 740 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 + + + A + D + V D + H + + + Sbjct: 741 QNGELALGQNPIIAFMTWNMYNYEDAIVL----SERLVKDDVYTSIHIEEYESEARDTKL 796 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E+ + + L + G G K T +S R Sbjct: 797 GPEEVTREIPNVGEEALKD--LDEFGVVRVGAEVRDGDILVGKVTPKGVTELSAEERLLH 854 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 F + +V+ + + KI + GD++ PGV +V+V++ K Sbjct: 855 AIFGEKAREVRDTSLRVPHGGGGIIQDV------KIFTREAGDELSPGVNMMVRVYITQK 908 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R IQ GDKMAGRHGNKG VS ++P EDMP+L DGTPVDI L+P+GVPSRMN+GQ+ E HL Sbjct: 909 RKIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVPSRMNIGQVLELHL 968 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A LG + + + D + D+ Sbjct: 969 GMAARNLGIHVATPVFDGANDKDLW----------------------------------- 993 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 A + A + G+S+LYDG TGEPF+ V+VG +Y +KL+H Sbjct: 994 ------------ATVKE-------AGMPSDGKSVLYDGRTGEPFENRVSVGVMYYMKLSH 1034 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 MV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD Sbjct: 1035 MVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDD 1094 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 VVGR + YE+IV G+ + G PESF VLVKE+QALGL + + + + Sbjct: 1095 VVGRVKTYEAIVKGDPIPKPGVPESFRVLVKELQALGLDMKVLGADKQEIELR 1147 >gi|255527834|ref|ZP_05394683.1| DNA-directed RNA polymerase, beta subunit [Clostridium carboxidivorans P7] gi|296187258|ref|ZP_06855654.1| DNA-directed RNA polymerase, beta subunit [Clostridium carboxidivorans P7] gi|255508475|gb|EET84866.1| DNA-directed RNA polymerase, beta subunit [Clostridium carboxidivorans P7] gi|296048129|gb|EFG87567.1| DNA-directed RNA polymerase, beta subunit [Clostridium carboxidivorans P7] Length = 1232 Score = 848 bits (2191), Expect = 0.0, Method: Composition-based stats. Identities = 426/955 (44%), Positives = 588/955 (61%), Gaps = 65/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K E+ ++P+LIEVQ SY+ FL EGLQ F + PI ++G Sbjct: 9 KRTRMSFSKLKEVGEMPNLIEVQLNSYNWFL----------KEGLQEVFDDINPIQDYTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV Y+ D K+ V++C RD TYA PLK+ +RL+ K ++KEQ Sbjct: 59 NLNLEFVGYKLDMDNIKYTVEECKERDSTYAAPLKVKVRLL---------NKETGEVKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++D + GK L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDMSVDKT---GKKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ E DS DII+VRID+ RK+P+T A+G ++ EI F + Sbjct: 167 GAWLEYETDSNDIIYVRIDKTRKLPITILARAMGYGTDAEITEFFGEDERLKATIEKDNT 226 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD----- 301 L+ K + GE ++S + L L K + +G Sbjct: 227 KTREEALLEIYK------RLRPGEPPTVDSAQSLIESLFFDPKRYDLSRVGRYKFNKKLA 280 Query: 302 ---CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A+DIVN +TGEI +E G+ I + EI + + + + D V I Sbjct: 281 LNLRIANQISAQDIVNPQTGEILVEKGEKISREKALEIQNCGVNMVNVQLEDRVIK--II 338 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 N V N + + ++ + + + + Y + ++ Sbjct: 339 GNNFVNIHN-----FVDFNIDDLNIKELVHYPALKQILDN-------YSDEDSIKEQIKK 386 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 ++ P +HI ++DI I + L G DDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 387 NIHALIP---KHIIRDDIYTTINYELGLPYDIGHTDDIDHLGNRRLRSVGELLQNQFRIG 443 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L RMER +KER++ D + + PQ LIN +PV +A+ EFF SSQLSQ + N LS +TH Sbjct: 444 LSRMERVVKERMTIQDQEVITPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHK 503 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A+VN YGFI Sbjct: 504 RRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLAAYAKVNEYGFI 563 Query: 599 ETPYRKVCDGKVT--NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 ETPYR V T +VY++A EE+ IAQAN LDE+G F + V R + ++V Sbjct: 564 ETPYRIVDKKTGTVQKKIVYMTADEEDEYVIAQANEPLDEEGHFIDSKVTVRDQEDVLVV 623 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P + +D +D S +Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E Sbjct: 624 PAQDVDLMDISARQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIE 683 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A SG AK AG V V A + ++ S G+D YRL+KF+RSNQ++C+ Sbjct: 684 FKAAVDSGVLPKAKNAGTVVYVSANEVRVKRD------SDGGIDTYRLLKFKRSNQSSCI 737 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP+V G++V + +++DGPSTDLG++ALG+N+ + F+ W GYN+ED+MLISE +V + Sbjct: 738 NQRPIVSKGEKVDKGTVLSDGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVKK 797 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEE+E ARDTKLGPEEITRDIPNV E+ LK+IDE GII +GAEV GDILVG Sbjct: 798 DVFTSIHIEEYEAEARDTKLGPEEITRDIPNVGEDALKDIDERGIIRIGAEVRSGDILVG 857 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV+IF R D Sbjct: 858 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKIFTRENGD 912 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 179/538 (33%), Positives = 245/538 (45%), Gaps = 77/538 (14%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 EV + G + R + I++ I+ G +V+ G +L + Sbjct: 709 EVRVKRDSDGGIDTYRLLKFKRSNQSSCINQRPIVSKGEKVDKGTVLSDGPSTDLGEIAL 768 Query: 908 PEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + + I E A+ + + ++ S + + R E Sbjct: 769 GKNIRMGFITWEGYNYEDAMLISEELVKKDVFTSIHIEEYEAEARDTKLGPEEITRDIPN 828 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E +D DE+ I+ R +IL G+ G L + E R Sbjct: 829 VGEDALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR---- 883 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 E KI + GD++PPGV ++V+ ++ KR Sbjct: 884 -------------EVRDTSLRVPHGEAGIIVDVKIFTRENGDELPPGVNKLVRCYIVQKR 930 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E HLG Sbjct: 931 KISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLG 990 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 WA +G I + + D DI Sbjct: 991 WAASEMGWHIATPVFDGATEEDIVQCLKDAGYDESGK----------------------- 1027 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 T ++DG TG+ FD PVTVGY+Y+LKL H+ Sbjct: 1028 -----TVLYDG--------------------------RTGDAFDNPVTVGYMYILKLAHL 1056 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDV Sbjct: 1057 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDV 1116 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 VGR + YE+IV G + E G PESF VL+KE+QAL L + + N + E + + Sbjct: 1117 VGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDDNQEIKLKESVDEE 1174 >gi|251799653|ref|YP_003014384.1| DNA-directed RNA polymerase subunit beta [Paenibacillus sp. JDR-2] gi|247547279|gb|ACT04298.1| DNA-directed RNA polymerase, beta subunit [Paenibacillus sp. JDR-2] Length = 1187 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 438/967 (45%), Positives = 597/967 (61%), Gaps = 83/967 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++++P+LIE+Q+ SY+ FL + L F+ Sbjct: 7 LAGQLVQYGR-RTRRSYARINEVLEVPNLIEIQQKSYEKFLDND----------LLELFQ 55 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEF+ Y PK+ VD+ RD+TYA PL++ +RL K Sbjct: 56 DISPIQDFTGNLSLEFIDYSLGEPKYSVDESKERDVTYAAPLRVKVRL---------FNK 106 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++F + +GK Y Sbjct: 107 ETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFS---TKVDKNGKKTY 163 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W+++E D+KDI++VRIDR RK+PVT L ALG ++ EIL Sbjct: 164 TATVIPNRGAWLELETDAKDIMYVRIDRTRKIPVTVLLRALGFGTDAEILELLGHDEYIR 223 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK------- 291 D + L+ + GE +++ K L K Sbjct: 224 NTLDKDNTDSTEKALI------EIYERLRPGEPPTLDNAKSLLVARFFDPKRYDLANVGR 277 Query: 292 -GVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + + L +AE +V+ TGEI EAG +ID + L+EI +D Sbjct: 278 YKINKKLHIKNRLFNQRLAETLVDPGTGEIIAEAGQMIDRRLLDEI------------LD 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N + V + D L V P D + Sbjct: 326 KLEKNVGFKTYHVANGVLDADSIPLQAISVYSP----------------------LDDAK 363 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 V +V N + V+HI DII+ I ++L +G G DDID+LGNRR+RSVGE+ Sbjct: 364 VIKVISNGVI----DKSVKHITPADIISSINYFINLLHGVGNTDDIDHLGNRRLRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL++FA Sbjct: 480 PLAELTHKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFA 539 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIE PYR V G VT + YL+A EE+N +AQAN+ L E+G+F ++ V R Sbjct: 540 RINEYGFIEAPYRWVDPKTGVVTEQISYLTADEEDNYVVAQANAKLTEEGNFVDDSVIVR 599 Query: 649 CA---GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 + +P E++D++D SPKQVVS+A +LIPFLENDDSNR LMG NMQRQAVPLL Sbjct: 600 YNKQADNILTMPSERVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLI 659 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG-VDIYRL 764 +AP VGTGME AK SG IV+K G++E+ A I +R E G + ++L Sbjct: 660 PKAPLVGTGMEHKSAKDSGVCIVSKYDGVIERASANEIWLRRTEILDGKQVVGDLVKHKL 719 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 KF RSNQ TC+NQRPLV+ GD +++ DI+ADGPST+ G+LALGRN++VAFM W GYN+E Sbjct: 720 HKFMRSNQGTCINQRPLVRKGDVIKKGDILADGPSTEQGELALGRNVVVAFMTWEGYNYE 779 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 D++L+SE++V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ LKN+DE GII V Sbjct: 780 DAILLSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRV 839 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 GAE++ GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G VVDV++ Sbjct: 840 GAEISAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKV 899 Query: 945 FNRHGID 951 F R D Sbjct: 900 FTRENGD 906 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 185/529 (34%), Positives = 265/529 (50%), Gaps = 68/529 (12%) Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + I++ ++ G + GDIL + + + + ++ A Sbjct: 712 GDLVKHKLHKFMRSNQGTCINQRPLVRKGDVIKKGDILADGPSTE-QGELALGRNVVVAF 770 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQV 976 + + D L +S +V ++ I++ E + E + RD + Sbjct: 771 MTWEGYNYEDAIL-----LSEKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE 825 Query: 977 ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVE 1036 +N+ R I G +G K T ++ R F + +V+ Sbjct: 826 DALKNLDER-GIIRVGAEISAGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSL 884 Query: 1037 SLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGN 1096 + + + K+ + GD++PPGV ++V+V++A KR I GDKMAGRHGN Sbjct: 885 RVPHGTDGIVVDV------KVFTRENGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGN 938 Query: 1097 KGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLI 1156 KG+++RI+P EDMPFL DGTPV++VLNPLGVPSRMN+GQ+ E HLG AC LG + + Sbjct: 939 KGVIARIMPEEDMPFLPDGTPVEVVLNPLGVPSRMNIGQVLEVHLGMACKRLGLHAATPV 998 Query: 1157 NDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADE 1216 D D VFD Sbjct: 999 FDGAREYD---------------------------------------------VFD---- 1009 Query: 1217 EAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYS 1276 + A + +G++ILYDG TGE F+R VTVG +YM+KL HMV DK++ARSTG YS Sbjct: 1010 -----TMEEAGMQRNGKTILYDGRTGESFEREVTVGVMYMIKLAHMVDDKIHARSTGPYS 1064 Query: 1277 LVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGN 1336 LVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YESIV G Sbjct: 1065 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGE 1124 Query: 1337 DTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME-EIPDFNKCE 1384 + E G PESF VL+KE+Q+LG+ + + + E + D + Sbjct: 1125 NVPEPGVPESFKVLIKELQSLGMDVKILTENEEEIEMKEIDDEDDGTSD 1173 >gi|677851|emb|CAA45512.1| DNA-directed RNA polymerase beta chain [Staphylococcus aureus RN4220] gi|1094970|prf||2107219B RNA polymerase:SUBUNIT=beta gi|1096954|prf||2113202B RNA polymerase:SUBUNIT=beta Length = 1182 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 442/965 (45%), Positives = 597/965 (61%), Gaps = 80/965 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ + + E++++P+LIE+Q SY+ FL EGL F+ Sbjct: 1 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLR----------EGLIEMFR 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+D+++ RD TYA PL++ +RLI+ K Sbjct: 51 DISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLII---------K 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT GTFVI G +R++VSQL RSP ++F+ + +G+ Y Sbjct: 102 ETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDK---NGRENY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 IIP++G W++ E D+KD+++VRIDR RK+P+T L ALG S+ EI+ Sbjct: 159 DATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG- 297 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDGTENTEQALL------EIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGR 272 Query: 298 -------ITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE IVN ETGEI +E G V+D + ++EI Sbjct: 273 YKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMD------------ 320 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 V + + + + +V P D Sbjct: 321 -VLESNANSEVFELHGSVIDEPVEIQSIKVYVPND------------------------D 355 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 GR + N +V+ I DIIA + +L +G G DDID+LGNRR+RSVGE+ Sbjct: 356 EGRT-TTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGEL 414 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +S+ PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 415 LQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQAN 474 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L+ +TH RRLSALG GG+ R RA +E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 475 PLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 534 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN +GFIETPYRKV +T+ + YL+A EE++ +AQANS LDE+G F ++ V CR Sbjct: 535 RVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCR 594 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G ++ +EK+D++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+ EA Sbjct: 595 FRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEA 654 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS-VEGDLDPSTSGVDIYRLMKF 767 PFVGTGME V A+ SGAAI AK G VE V++ I++R VE + +D Y L KF Sbjct: 655 PFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKF 714 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSN TC NQRP+V VGD V N+I+ADGPS +LG++ALGRN++V FM W GYN+ED++ Sbjct: 715 KRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAV 774 Query: 828 LISERMVSEDVFTSIHIEEFEV-MARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGA 886 ++SER+V +DV+TSIHIEE+E RDTKLGPEEITRDIPNVSE LKN+D+ GI+ +GA Sbjct: 775 IMSERLVKDDVYTSIHIEEYESRRQRDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGA 834 Query: 887 EVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFN 946 EV GDILVGK+TPKG + +T EE+LL AIFGEKA +VRDTSLRVP G G V+DV++FN Sbjct: 835 EVKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFN 894 Query: 947 RHGID 951 R D Sbjct: 895 REEGD 899 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 249/1158 (21%), Positives = 423/1158 (36%), Gaps = 129/1158 (11%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFL-----GI 298 + + + DTG VI ++ + S L++S + + Sbjct: 98 LIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGREN 157 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A + ++ D + L + + VD + +N Y+ Sbjct: 158 YDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYL 217 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL++VGR K N Sbjct: 218 RNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNK 277 Query: 419 RLNLDTPDDVRHI--------RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +L+L + + E ++ +L + + N + G + Sbjct: 278 KLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSV 337 Query: 471 LKNQYRLGLLRME----RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLE 526 + + +++ + + I +++++ FF Sbjct: 338 IDEPVEIQSIKVYVPNDDEGRTTTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYT 397 Query: 527 EHVNSLSRITHTRRLSALGQG--GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 + ++ L RRL ++G+ R R V R+ +T L++ Sbjct: 398 DDIDHLG----NRRLRSVGELLQNQFRIGLSRMERVVRE----RMSIQDTESITPQQLIN 449 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 A + + + + ++ + L Sbjct: 450 IRPVIASIKEFFGSSQLSQFMDQANPLAELTH---------------------KRRLSAL 488 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPL 703 E + + + + I + + S + Sbjct: 489 GPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRK 548 Query: 704 LKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYR 763 + + + ++ + A + +VA+ + + + + Sbjct: 549 VDLDTHAITDQIDYLTADEEDSYVVAQANSKL-----DENGRFMDDEVVCRFRGNNTVMA 603 Query: 764 LMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNF 823 K + + + +D ++ A+ A G Sbjct: 604 KEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEH 663 Query: 824 EDSMLISERMVSEDVFTSIHIEEFEVMARDT-------KLGPEEITRDIPNVSEEGLKNI 876 + + ++ H+E E++ R G + Sbjct: 664 VAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCY 723 Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVS 936 ++ I+ VG V +IL + M ++ + D + Sbjct: 724 NQRPIVAVGDVVEYNEILADGPS-MELGEMALGRNVVVGFMTWDGYNYEDAVIM----SE 778 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAV 996 V D + H + R + E + RD + +N+ R + G Sbjct: 779 RLVKDDVYTSIHIEEYESRRQRDTKLGPEEITRDIPNVSESALKNLDDR-GIVYIGAEVK 837 Query: 997 SGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNK 1056 G K T ++ R F + +V+ + K Sbjct: 838 DGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIV------LDVK 891 Query: 1057 IEKIQWGDD-MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 + + GDD + PGV ++V+V++ KR I GDKM GRHGNKG++S+I+P EDMP+L DG Sbjct: 892 VFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDG 951 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 P+DI+LNPLGVPSRMN+GQ+ E HLG A LG + S + D + D+ Sbjct: 952 RPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWST------- 1004 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + A + G +++ Sbjct: 1005 ------------------IEEAGMARDG-----------------------------KTV 1017 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD ++VG +YMLKL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 1018 LYDGRTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1077 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDD VGR + YE+IV G + PESF VL+KE+Q Sbjct: 1078 EMEVWALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQ 1137 Query: 1356 ALGLSIDLENSRTKNSAK 1373 +LGL + + + + Sbjct: 1138 SLGLDVKVMDEQDNEIEM 1155 >gi|327383528|gb|AEA55004.1| DNA-directed RNA polymerase subunit beta [Lactobacillus casei LC2W] gi|327386721|gb|AEA58195.1| DNA-directed RNA polymerase subunit beta [Lactobacillus casei BD-II] Length = 1194 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 420/956 (43%), Positives = 579/956 (60%), Gaps = 79/956 (8%) Query: 8 NGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITA 67 G R R+ + + E++D+P+LIE+Q SY FL +EGL+ F + PI Sbjct: 3 YGKHRTRRSYARIKEVLDLPNLIEIQTNSYQWFL----------DEGLKEMFDDIMPIDD 52 Query: 68 FSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKE 127 F G LEFV Y+ PK+ V++ D Y+ PL +TLRL +IK Sbjct: 53 FQGKLSLEFVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLT---------NHETGEIKS 103 Query: 128 QSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD 187 Q ++ GD PLMTK GTF+I G +R++VSQL RSPG++F + + + ++ Y +IP+ Sbjct: 104 QDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFHSETDK---NSRVTYGTTVIPN 160 Query: 188 QGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWC 246 +G W++ E D+KDI +VRIDR RK+P+T + ALG S+ +I++ F + Sbjct: 161 RGAWLEYETDAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKD- 219 Query: 247 FPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS----- 300 + D + + GE +S + L K + +G Sbjct: 220 VHKNTDDSRTDEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKL 279 Query: 301 ---DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAY 357 L +AE + + +TGE+ + G +D + ++++ Sbjct: 280 SLKTRLLNQVLAETLADPDTGEVIAQKGTKVDRQVMDKLAPYL----------------- 322 Query: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMN 417 DR D Y+ G V+ +S+ + DK +N Sbjct: 323 -----------DRDDFKTITYQPSDQGVVTDPIELQSIKVYSQVTPDKE---------IN 362 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 + N V+HI D++A + ++L+ G G+IDDID+LGNRR+RSVGE+L+NQ+R+ Sbjct: 363 LIGNGHIGKKVKHIVPADVLASMNYFLNLQEGLGSIDDIDHLGNRRIRSVGELLQNQFRI 422 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N L +TH Sbjct: 423 GLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGELTH 482 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A VN YGF Sbjct: 483 KRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYAVVNPYGF 542 Query: 598 IETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 IETPYR+V KVT+ + YL+A EE+N +AQANS L++DGSF +E V R I Sbjct: 543 IETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDETVLARHKDNNIE 602 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ AP VGTGM Sbjct: 603 ISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVNPHAPLVGTGM 662 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC 775 E A SG A++A AG VE VDA +I +R +G LD Y LMKF+RSN Sbjct: 663 EYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALDA-------YNLMKFKRSNAGKN 715 Query: 776 VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835 NQRP+V +GD V ++IIADGP+ G+LALG+N ++AFM W+ YN+ED++++SER+V Sbjct: 716 YNQRPIVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIVLSERLVK 775 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 +DV+TSIHIEE+E ARDTKLGPEE+TR+IPNV EE LK++DE G++ VGAEV GDILV Sbjct: 776 DDVYTSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEVRDGDILV 835 Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 GK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G + DV+IF R D Sbjct: 836 GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTREAGD 891 Score = 523 bits (1346), Expect = e-145, Method: Composition-based stats. Identities = 236/1072 (22%), Positives = 385/1072 (35%), Gaps = 102/1072 (9%) Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D + I + E F S+ I + + ++ + Sbjct: 170 DAKDIAYVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRT 229 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 +AL DIY +RPG+ T + S+ FFD +YDL++VGR K+N +L+L T + Sbjct: 230 DEALKDIYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQV 289 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 + L + + + ++ R + ++ Sbjct: 290 L-----------AETLADPDTGEVIAQKGTKVDRQVMDKLAPYLDRDDFKTITYQPSDQG 338 Query: 491 SSVDI---DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 D S+ + ++ + ++ + S LG Sbjct: 339 VVTDPIELQSIKVYSQVTPDKEINLIGNGHIGKKVKHIVPADVLASMNYFLNLQEGLGSI 398 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 +R V + + + S+ A V I R V Sbjct: 399 DDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMSIQDTATVTPQQLI--NIRPVVA 456 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDAS 667 + + + L + + + Sbjct: 457 SIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYG 512 Query: 668 PKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAA 726 + I + + S V+ + + V ++ + A Sbjct: 513 RMCPIETPEGPNIGLINSLASYAVVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNY 572 Query: 727 IVAKRA----GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 IVA+ VD + + K + C+ Sbjct: 573 IVAQANSPLNDDGSFVDETVLARHKDNNIEISPDKVDYMDVSPKQVVAVATACIP----- 627 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 + +D ++ A+ A + G ++ + +++ + T Sbjct: 628 ----FLENDDSNRALMGANMQRQAVPLVNPHAPLVGTGMEYKAAHDSGTAVLANNAGTVE 683 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 +++ ++ R + G + + KN ++ I+ +G V D ++ Sbjct: 684 YVDAKQIRVRR-EDGALDAYNLMKFKRSNAGKNYNQRPIVTIGDHV-DVDEIIADGPAMQ 741 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + + + A + D + V D + H + + + Sbjct: 742 NGELALGQNPIIAFMTWNMYNYEDAIVL----SERLVKDDVYTSIHIEEYESEARDTKLG 797 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E+ + + L + G G K T +S R Sbjct: 798 PEEVTREIPNVGEEALKD--LDEFGVVRVGAEVRDGDILVGKVTPKGVTELSAEERLLHA 855 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 F + +V+ + + KI + GD++ PGV +V+V++ KR Sbjct: 856 IFGEKAREVRDTSLRVPHGGGGIIQDV------KIFTREAGDELSPGVNMMVRVYITQKR 909 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKMAGRHGNKG VS ++P EDMP+L DGTPVDI L+P+GVPSRMN+GQ+ E HLG Sbjct: 910 KIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVPSRMNIGQVLELHLG 969 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG + + + D + D+ Sbjct: 970 MAARNLGIHVATPVFDGANDKDLW------------------------------------ 993 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 A + A + G+S+LYDG TGEPF+ V+VG +Y +KL+HM Sbjct: 994 -----------ATVKE-------AGMASDGKSVLYDGRTGEPFENRVSVGIMYYMKLSHM 1035 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDV Sbjct: 1036 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDV 1095 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 VGR + YE+IV G + G PESF VLVKE+QALGL + + + K Sbjct: 1096 VGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGLDMKVLGADKKEIELR 1147 >gi|184155999|ref|YP_001844339.1| DNA-directed RNA polymerase subunit beta [Lactobacillus fermentum IFO 3956] gi|183227343|dbj|BAG27859.1| DNA-directed RNA polymerase beta subunit [Lactobacillus fermentum IFO 3956] Length = 1193 Score = 847 bits (2189), Expect = 0.0, Method: Composition-based stats. Identities = 429/966 (44%), Positives = 596/966 (61%), Gaps = 84/966 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY+ F+ ++GL+ F Sbjct: 4 LAGHLVKYGKHRTRRSYSRIKEVLDLPNLIEIQTDSYNWFM----------DKGLREMFD 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V + D Y+ PL +TLRL Sbjct: 54 DIMPIDDFQGKLSLEFVDYQLLEPKYTVAEAREHDANYSAPLHVTLRLT---------NH 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG++++ + + +G+ Y Sbjct: 105 ETGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYNEEADK---NGRPSY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFY---PKI 236 IP++G W++ E D+K I +VRIDR RK+P+T + ALG S+ EI + Sbjct: 162 GANFIPNRGAWLEYETDAKGISYVRIDRTRKLPITELVRALGFGSDDEIWDMLGSESESL 221 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKF 295 + D D V + + GE +S + L + K + Sbjct: 222 NATIEKDLHK---EPEDSRVEESLKDIYERLRPGEPKTADSARSLLTTRFFDPKRYDMAP 278 Query: 296 LGITS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL 347 +G L GL +AE + + ETGEI + GDVI ++ L+E+ P+L Sbjct: 279 VGRYKTNKKLQMKYRLLGLTLAETLADPETGEIIAKDGDVITKEVLKELE-------PVL 331 Query: 348 YVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYD 407 D Y +A++ + + + + D ++ Sbjct: 332 EQDDFKMITY----------TPSDEAVVTAPVQL-----------QKIMVYSKNDPER-- 368 Query: 408 LSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSV 467 K+ + N D++HI+ DI+A I ++L+ G GT DDID+LGNRR+RSV Sbjct: 369 -------KVPVVSNGHISLDLKHIQPADILASINYFLNLQEGIGTTDDIDHLGNRRIRSV 421 Query: 468 GEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEE 527 GE+L+NQ+R+GL RMER ++ER+S DI++V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 422 GELLQNQFRIGLARMERVVRERMSIQDINTVTPQQLINIRPVVASIKEFFGSSQLSQFMD 481 Query: 528 HVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 N L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ Sbjct: 482 QTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLS 541 Query: 588 SFARVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELV 645 S+ARVNAYGFIETPYR+V D KVT+ + YL+A EE+N IAQAN+ L+EDGSF + + Sbjct: 542 SYARVNAYGFIETPYRRVSWADHKVTDRIDYLTADEEDNFIIAQANTPLNEDGSFVHDEI 601 Query: 646 FCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 CR + I E +D++D SPKQVVS+A++ IPFLENDDSNR LMG NMQRQAVPL+ Sbjct: 602 MCRDKEDYIETAPENVDYMDVSPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLIN 661 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 AP +GTG+E A SG A++AK +G VE VDA + +R +G LD Y+LM Sbjct: 662 PHAPLIGTGIEYKAAHDSGVALIAKNSGTVEYVDAREVRVRQEDGTLD-------TYKLM 714 Query: 766 KFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 KF+RSN NQRP+VKVG+ V +D++ADGPS + G+LALG+N L+AFM W GYNFED Sbjct: 715 KFRRSNGGKNYNQRPIVKVGEWVDADDVLADGPSMEQGELALGQNPLIAFMTWQGYNFED 774 Query: 826 SMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVG 885 ++ I+ER+V +DV+TSIHIE +E AR+TKLGPEE+TR+IPNVSE+ K++DE G+I VG Sbjct: 775 AIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVSEDARKDLDESGVIRVG 834 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 AEV+ GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G + DV++F Sbjct: 835 AEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVF 894 Query: 946 NRHGID 951 R D Sbjct: 895 TRENGD 900 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 176/530 (33%), Positives = 254/530 (47%), Gaps = 67/530 (12%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 + G + + + G KN ++ I+ VG V+ D+L + + + + Sbjct: 702 RQEDGTLDTYKLMKFRRSNGGKNYNQRPIVKVGEWVDADDVLADGPS-MEQGELALGQNP 760 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 L A + + D V V + + E + E E+ +D Sbjct: 761 LIAFMTWQGYNFEDAIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVSED 820 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 + + + + I G G K T +S R F + +V+ Sbjct: 821 ARKDLDESGV------IRVGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVR 874 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + K+ + GD++ PGV ++V+V++A KR IQ GDKM+G Sbjct: 875 DTSLRVPHGGGGIIQDV------KVFTRENGDELAPGVNKMVRVYIAQKRKIQVGDKMSG 928 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG VS ++P EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG I Sbjct: 929 RHGNKGTVSIVVPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQVIELHLGMAARELGIHI 988 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D + D V+D Sbjct: 989 ATPVFDGANDQD---------------------------------------------VWD 1003 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 E A L G++ILYDG TGEPF++ V VG ++ LKL HMV DK++ARST Sbjct: 1004 AVKE---------AGLPSDGKTILYDGRTGEPFEQRVAVGVMHYLKLAHMVDDKIHARST 1054 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD VGR Y++I Sbjct: 1055 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVNTYQAI 1114 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 + G+ + G PESF VLVKE+Q+LGL + + + + + D Sbjct: 1115 IDGDQIPKPGVPESFRVLVKELQSLGLDMKVLDDKHEEIQLKSMDEDVAD 1164 >gi|260662743|ref|ZP_05863637.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|260552824|gb|EEX25823.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus fermentum 28-3-CHN] Length = 1193 Score = 847 bits (2189), Expect = 0.0, Method: Composition-based stats. Identities = 429/966 (44%), Positives = 596/966 (61%), Gaps = 84/966 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY+ F+ ++GL+ F Sbjct: 4 LAGHLVKYGKHRTRRSYSRIKEVLDLPNLIEIQTDSYNWFM----------DKGLREMFD 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ V + D Y+ PL +TLRL Sbjct: 54 DIMPIDDFQGKLSLEFVDYQLLEPKYTVAEAREHDANYSAPLHVTLRLT---------NH 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG++++ + + +G+ Y Sbjct: 105 ETGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYNEEADK---NGRPSY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFY---PKI 236 IP++G W++ E D+K I +VRIDR RK+P+T + ALG S+ EI + Sbjct: 162 GANFIPNRGAWLEYETDAKGISYVRIDRTRKLPITELVRALGFGSDDEIWDMLGSESESL 221 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKF 295 + D D V + + GE +S + L + K + Sbjct: 222 NATIEKDLHK---EPEDSRVEESLKDIYERLRPGEPKTADSARSLLTTRFFDPKRYDMAP 278 Query: 296 LGITS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL 347 +G L GL +AE + + ETGEI + GDVI ++ L+E+ P+L Sbjct: 279 VGRYKTNKKLQMKYRLLGLTLAETLADPETGEIIAKDGDVITKEVLKELE-------PVL 331 Query: 348 YVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYD 407 D Y +A++ + + + + D ++ Sbjct: 332 EQDDFKMITY----------TPSDEAVVTAPVQL-----------QKIMVYSKNDPER-- 368 Query: 408 LSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSV 467 K+ + N D++HI+ DI+A I ++L+ G GT DDID+LGNRR+RSV Sbjct: 369 -------KVPVVSNGHISLDLKHIQPADILASINYFLNLQEGIGTTDDIDHLGNRRIRSV 421 Query: 468 GEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEE 527 GE+L+NQ+R+GL RMER ++ER+S DI++V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 422 GELLQNQFRIGLARMERVVRERMSIQDINTVTPQQLINIRPVVASIKEFFGSSQLSQFMD 481 Query: 528 HVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 N L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ Sbjct: 482 QTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLS 541 Query: 588 SFARVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELV 645 S+ARVNAYGFIETPYR+V D KVT+ + YL+A EE+N IAQAN+ L+EDGSF + + Sbjct: 542 SYARVNAYGFIETPYRRVSWADHKVTDRIDYLTADEEDNFIIAQANTPLNEDGSFVHDEI 601 Query: 646 FCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 CR + I E +D++D SPKQVVS+A++ IPFLENDDSNR LMG NMQRQAVPL+ Sbjct: 602 MCRDKEDYIETAPENVDYMDVSPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLIN 661 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 AP +GTG+E A SG A++AK +G VE VDA + +R +G LD Y+LM Sbjct: 662 PHAPLIGTGIEYKAAHDSGVALIAKNSGTVEYVDAREVRVRQEDGTLD-------TYKLM 714 Query: 766 KFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 KF+RSN NQRP+VKVG+ V +D++ADGPS + G+LALG+N L+AFM W GYNFED Sbjct: 715 KFRRSNGGKNYNQRPIVKVGEWVDADDVLADGPSMEQGELALGQNPLIAFMTWQGYNFED 774 Query: 826 SMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVG 885 ++ I+ER+V +DV+TSIHIE +E AR+TKLGPEE+TR+IPNVSE+ K++DE G+I VG Sbjct: 775 AIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVSEDARKDLDESGVIRVG 834 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 AEV+ GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G + DV++F Sbjct: 835 AEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVF 894 Query: 946 NRHGID 951 R D Sbjct: 895 TRENGD 900 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 177/530 (33%), Positives = 255/530 (48%), Gaps = 67/530 (12%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 + G + + + G KN ++ I+ VG V+ D+L + + + + Sbjct: 702 RQEDGTLDTYKLMKFRRSNGGKNYNQRPIVKVGEWVDADDVLADGPS-MEQGELALGQNP 760 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 L A + + D V V + + E + E E+ +D Sbjct: 761 LIAFMTWQGYNFEDAIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVSED 820 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 + + + + I G G K T +S R F + +V+ Sbjct: 821 ARKDLDESGV------IRVGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVR 874 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + K+ + GD++ PGV ++V+V++A KR IQ GDKM+G Sbjct: 875 DTSLRVPHGGGGIIQDV------KVFTRENGDELAPGVNKMVRVYIAQKRKIQVGDKMSG 928 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG VS ++P EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG I Sbjct: 929 RHGNKGTVSIVVPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQVIELHLGMAARELGIHI 988 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 +L+ D + D V+D Sbjct: 989 ATLVFDGANDQD---------------------------------------------VWD 1003 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 E A L G++ILYDG TGEPF++ V VG ++ LKL HMV DK++ARST Sbjct: 1004 AVKE---------AGLPSDGKTILYDGRTGEPFEQRVAVGVMHYLKLAHMVDDKIHARST 1054 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDD VGR Y++I Sbjct: 1055 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVNTYQAI 1114 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 + G+ + G PESF VLVKE+Q+LGL + + + + + D Sbjct: 1115 IDGDQIPKPGVPESFRVLVKELQSLGLDMKVLDDKHEEIQLKSMDEDVAD 1164 >gi|41017743|sp|Q8GCR3|RPOB4_ENTFC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|27372997|gb|AAO00731.1| DNA-dependent RNA polymerase subunit beta [Enterococcus faecium] Length = 1208 Score = 847 bits (2189), Expect = 0.0, Method: Composition-based stats. Identities = 418/963 (43%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 54 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + N ++ + + +V P D Sbjct: 329 FIENGLNSVTYYPSEDGVVTDPMTVQVIKVFSPKDP------------------------ 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 365 --EREVNVIGNGYPEAPVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 543 KVNKFGFIETPYRRVDRQTGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 603 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA +I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDASQIRVRRDNGALDK-------YDITKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+L M W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLSVSMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 KDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 173/499 (34%), Positives = 237/499 (47%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + V V Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLSVSMTWEGYNYEDAIIMSRRLVKDDVY 786 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + ++L G+ Sbjct: 787 TSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKDGDLLVGKVT 846 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 847 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 889 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 890 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 949 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 950 TPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA--------------- 994 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D+ V + T ++DG Sbjct: 995 -------------SDEDVWETVREAGMASEAKTVLYDG---------------------- 1019 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1020 ----RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1075 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1076 EMEVWALEAYGAAYTLQEILTSKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1135 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + + Sbjct: 1136 SLGLDMRVLDIKDAEIELR 1154 >gi|315580834|gb|EFU93025.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0309A] Length = 1207 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 592/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 54 DILPIDDFQGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKSQEVFFGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S + I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSYDTIFEIFGDSESLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTIEKD-LHKNASDSRTEEGLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQIMETL-------------- 326 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 YI N L + +DA++ + T V + + Sbjct: 327 ----GEYIDNGLNSVTYYPSEDAVV--------TEPMTIQVIQVLSPKDP---------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N D V+ +R DI+A + +L G +DDID+LGNRR+RSVGE+ Sbjct: 365 --ERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ V YL+A E++ +AQANS L+EDG+F ++V R Sbjct: 543 KVNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL++ + Sbjct: 603 LQSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRS 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDK-------YMVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 175/499 (35%), Positives = 237/499 (47%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + E M + +L A + + D + V V Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKDDVY 786 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + ++L G+ Sbjct: 787 TSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVGKVT 846 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 847 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 889 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 890 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 949 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 950 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA--------------- 994 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D+ V + T ++DG Sbjct: 995 -------------TDEDVWETVREAGMASDAKTVLYDG---------------------- 1019 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD ++VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1020 ----RTGEPFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1075 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1135 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + Sbjct: 1136 SLGLDMRVLDIEEAEIELR 1154 >gi|41017745|sp|Q8GCR5|RPOB3_ENTFC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|27372993|gb|AAO00729.1| DNA-dependent RNA polymerase subunit beta [Enterococcus faecium] Length = 1208 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 419/963 (43%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLGEMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 54 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E +KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETSAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + +V P D Sbjct: 329 FIDNGLNSVTYYPSEDGVVTDPMTVQVIKVFSPKDP------------------------ 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 365 --EREVNVIGNGYPESAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 543 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 603 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDASEIRVRRDNGALDK-------YAVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 176/504 (34%), Positives = 237/504 (47%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 778 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 779 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 830 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 831 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 889 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 890 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 944 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 945 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 994 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 995 ------------------SDEDVWETVREAGMASDAKTILYDG----------------- 1019 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1020 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1070 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1071 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1130 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + + Sbjct: 1131 VKELQSLGLDMRVLDIKDSEIQLR 1154 >gi|227512857|ref|ZP_03942906.1| DNA-directed RNA polymerase subunit beta [Lactobacillus buchneri ATCC 11577] gi|227083857|gb|EEI19169.1| DNA-directed RNA polymerase subunit beta [Lactobacillus buchneri ATCC 11577] Length = 1205 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 428/963 (44%), Positives = 587/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY+ FL +GL+ F Sbjct: 4 LAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTNSYNWFL----------KDGLRETFD 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ VD+ + Y+ PL ITL+L + D Sbjct: 54 GIMPIDDFQGKLSLEFVDYQLLEPKYTVDEAREHEANYSAPLHITLKLTNHETD------ 107 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG+++ D + +G++ Y Sbjct: 108 ---EIKTQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYHEDTDK---NGRISY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E DSK+I +VRIDR RK+P+T + ALG S+ EI Sbjct: 162 GTTVIPNRGAWLEFETDSKNISYVRIDRTRKIPLTELIRALGFGSDGEITDILGDNDSLE 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + D V + + GE ES + L + K + +G Sbjct: 222 LTLEKD-VHKDTDDSRVEESLKDIYERLRPGEPKTAESSRSLLTARFFDPKRYDMAPVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L GL +AE + + ETGE+ ++ V+ + ++++ Y+D Sbjct: 281 YKTNKKLSLKNRLLGLTLAETLADPETGEVIVQKDTVVTKDVMKKLSP---------YLD 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 AY N +D+ + + I +V D Sbjct: 332 QKEFKAYTFNP--SDEAVVTEPMTVQIIKVYSANDP------------------------ 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + P +HI DIIA + +L+ G G+IDDID+LGNRR+RSVGE+ Sbjct: 366 --EKVVPLIGNDNIPLAFKHITPADIIASMNYFFNLQEGIGSIDDIDHLGNRRIRSVGEL 423 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 424 LQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 483 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+A Sbjct: 484 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA 543 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIETPYR+V KVT+ + YL+A EE+N IAQANS L++DGSF +V R Sbjct: 544 RINKYGFIETPYRRVDWTSHKVTDRIDYLTADEEDNFVIAQANSPLNDDGSFVNNVVMAR 603 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 I + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 604 HKSNNIEISIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVDPHA 663 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTG+E A SG A++ K AG VE VDA + IR +G LD Y+LMKF+ Sbjct: 664 PLVGTGIEYKAAHDSGVALICKFAGTVEYVDAREVRIRRDDGTLDK-------YKLMKFR 716 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V+VGD V ++++ADGPS + G+LALG+N +VAFM W GYNFED++ Sbjct: 717 RSNGGKNYNQRPIVRVGDHVDPDEVLADGPSMEGGELALGQNPIVAFMTWQGYNFEDAIA 776 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 ISER+V +DV+TSIHIEE+E RDTKLGPEE+TR+IPNV E+ LKN+DE G I +GAEV Sbjct: 777 ISERLVKDDVYTSIHIEEYESETRDTKLGPEEMTREIPNVGEDALKNLDEGGTIRIGAEV 836 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 + GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G V DV++F R Sbjct: 837 HDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIVQDVKVFTRE 896 Query: 949 GID 951 D Sbjct: 897 NGD 899 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 257/1105 (23%), Positives = 398/1105 (36%), Gaps = 168/1105 (15%) Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 D N I + E F S+ IL + ++ + Sbjct: 178 DSKNISYVRIDRTRKIPLTELIRALGFGSDGEITDILGDNDSLELTLEKDVHKDTDDSRV 237 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV----KMNMRLNLDTPD 426 +++L DIY +RPG+ T + S+ FFD +YD++ VGR K++++ L Sbjct: 238 EESLKDIYERLRPGEPKTAESSRSLLTARFFDPKRYDMAPVGRYKTNKKLSLKNRLLGLT 297 Query: 427 DVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 + + +I + L + ++ ++ + + I Sbjct: 298 LAETLADPETGEVIVQKDTVVTKDVMKKLSPYLDQKEFKAYTFNPSDEAVVTEPMTVQII 357 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT-----RRL 541 K ++ V N + + ++ + I RR+ Sbjct: 358 KVYSANDPEKVVPLIGNDNIPLAFKHITPADIIASMNYFFNLQEGIGSIDDIDHLGNRRI 417 Query: 542 SALGQ-------GGVARARAGVEMR-------DVHPTHYGRICPAETSEGHNIGLVSSLT 587 ++G+ G++R V R V P I P S G Sbjct: 418 RSVGELLQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQ 477 Query: 588 SFARVNAYGFIETPYRK----------------VCDGKVTNDVVYLSAMEEENRYIAQAN 631 + N G + R V D T+ E I N Sbjct: 478 FMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLIN 537 Query: 632 S--SLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNR 689 S S + R ++ID++ A + IA + P +D Sbjct: 538 SLSSYARINKYGFIETPYRRVDWTSHKVTDRIDYLTADEEDNFVIAQANSPL---NDDGS 594 Query: 690 VLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE 749 + M R ++ V V+ A+ +E D+ R ++ + Sbjct: 595 FVNNVVMARHKSNNIEISIDKVD---YMDVSPKQVVAVATACIPFLENDDSNRALMGAN- 650 Query: 750 GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGR 809 QR PLV G + Sbjct: 651 -----------------MQRQAVPLVDPHAPLVGTGI-----------------EYKAAH 676 Query: 810 NMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVS 869 + VA + E R+ +D G + + + Sbjct: 677 DSGVALICKFAGTVEYVDAREVRIRRDD-------------------GTLDKYKLMKFRR 717 Query: 870 EEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSL 929 G KN ++ I+ VG V+P ++L + +G + + + A + + D Sbjct: 718 SNGGKNYNQRPIVRVGDHVDPDEVLADGPSMEG-GELALGQNPIVAFMTWQGYNFEDAI- 775 Query: 930 RVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEI 989 + V D + H + + + E+ + + L I Sbjct: 776 ---AISERLVKDDVYTSIHIEEYESETRDTKLGPEEMTREIPNVGEDALKN--LDEGGTI 830 Query: 990 LCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSIL 1049 G G K T +S R F + +V+ + + Sbjct: 831 RIGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIVQDV 890 Query: 1050 EDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDM 1109 K+ + GD++ PGV R+V+V++A KR IQ GDKM+GRHGNKG VS ++P EDM Sbjct: 891 ------KVFTRENGDELSPGVNRMVRVYIAQKRKIQVGDKMSGRHGNKGTVSVVIPEEDM 944 Query: 1110 PFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLR 1169 PFL DGTPVDI+L+P+GVPSRMN+GQ+ E HLG A LG + + + D ++ DI Sbjct: 945 PFLPDGTPVDIMLSPMGVPSRMNIGQVLELHLGMAARKLGIHVATPVFDGASDKDIWNAV 1004 Query: 1170 SFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLD 1229 Sbjct: 1005 KEAGMPKDGKYIL----------------------------------------------- 1017 Query: 1230 ESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNR 1289 G++ GEPFD+P+ VG ++ LKL HMV DK++ARS G YSLVTQQPLGGK+ Sbjct: 1018 YDGRT-------GEPFDKPIAVGVMHYLKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQF 1070 Query: 1290 GGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF V Sbjct: 1071 GGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRV 1130 Query: 1350 LVKEMQALGLSIDLENSRTKNSAKM 1374 LVKE+Q+LGL + + +S K Sbjct: 1131 LVKELQSLGLDMKVLDSSHKEIELR 1155 >gi|51894220|ref|YP_076911.1| DNA-directed RNA polymerase subunit beta [Symbiobacterium thermophilum IAM 14863] gi|81387938|sp|Q67JT3|RPOB_SYMTH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|51857909|dbj|BAD42067.1| RNA polymerase beta subunit [Symbiobacterium thermophilum IAM 14863] Length = 1250 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 435/960 (45%), Positives = 593/960 (61%), Gaps = 110/960 (11%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 +V G R R F + E++++P+LIE+Q+ SY FL EGLQ F+ + Sbjct: 3 KIVQAGR-RQRLSFSRIDEVLEMPNLIELQRNSYQWFLR----------EGLQEMFQDIS 51 Query: 64 PITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 PI F+G +LEF+ Y PK+ +++C RD+TYA PL++ +RLI K Sbjct: 52 PIQDFTGNLVLEFIDYSLGEPKYSIEECKERDVTYAAPLRVRVRLI---------NKETG 102 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 ++KEQ ++MGD PLMT GTF+I G +R++VSQL RSPG++F SGK L+ Sbjct: 103 EVKEQEVFMGDFPLMTPTGTFIINGAERVIVSQLVRSPGVYFSEQID---PSGKKLFFAT 159 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRG 242 +IP++G W++ E D D+I+VR+DR RK+P T L ALG S+ EIL + Sbjct: 160 MIPNRGAWLEFESDVNDVIYVRVDRTRKLPATVLLRALGFGSDQEILDAVGDSEYIRRTL 219 Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGIT-- 299 + L+ K + GE ++ ++L L K + +G Sbjct: 220 EKDSTESEEEALIEIYK------RLRPGEPPAADNARQLLETLFFEPKRYDLMHVGRYRL 273 Query: 300 ------SDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVN 353 + G + +V+ ETGE+ Sbjct: 274 NKKLALKRRIVGTSTVDRVVHPETGEVLA------------------------------- 302 Query: 354 NNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGR 413 +A + I + + + + +++ + + + R Sbjct: 303 ------------------EAGVQIDKRL--AEKIDEAGVDAL-------TVRLRDGGIVR 335 Query: 414 VKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKN 473 V N R V+ I ++DI+A+I +V L G G++DDID+LGNRRVRSVGE+L+N Sbjct: 336 VVANGR----PDIRVKTIVRQDIVAVINYMVSLFKGLGSVDDIDHLGNRRVRSVGELLQN 391 Query: 474 QYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLS 533 Q+R+GL RMER IKER++ D+D + PQ LIN +PVV+AV EFF SSQLSQ + N L+ Sbjct: 392 QFRIGLARMERVIKERMTIQDVDIITPQALINIRPVVAAVKEFFGSSQLSQFMDQTNPLA 451 Query: 534 RITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVN 593 +T+ RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+ +L +FAR+N Sbjct: 452 ELTNKRRLSALGPGGLSRERAGYEVRDVHTSHYGRMCPIETPEGPNIGLIGALATFARIN 511 Query: 594 AYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 YGFIETPYRKV +VT+++VYL+A EE+ IAQAN L+ DG+F + V CR Sbjct: 512 EYGFIETPYRKVDQESGRVTDEIVYLTADEEDENIIAQANEPLNPDGTFARDRVTCRYRD 571 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E + VP ++D++D SPKQVVSIA +LIPFLENDD++R LMG NMQRQAVPLL+ EAP+V Sbjct: 572 EILQVPPSQVDYMDVSPKQVVSIATALIPFLENDDASRALMGSNMQRQAVPLLRTEAPYV 631 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTGME A SG ++A+ G+V + A +V++ + V Y+L KF RSN Sbjct: 632 GTGMEYRSAWDSGVCVIAENDGVVLRATASEVVVQYDDMQ-------VKKYKLTKFTRSN 684 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 Q TC+NQ+P+V+ GD VR+ D+IADGPSTD G+LALGRN+LVA+M + GYN+ED+++I+E Sbjct: 685 QGTCMNQKPIVRAGDRVRKGDVIADGPSTDQGELALGRNVLVAYMCYEGYNYEDAIIINE 744 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+V EDVFTSIHIEE E ARDTKLGPEEITRDIPNV E+ LK++DE GII +GAEV PG Sbjct: 745 RLVREDVFTSIHIEEHECEARDTKLGPEEITRDIPNVGEDVLKDLDERGIIRIGAEVRPG 804 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG VVDV++F R D Sbjct: 805 DILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKVFTRENGD 864 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 148/514 (28%), Positives = 219/514 (42%), Gaps = 81/514 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ G V GD++ + + + +L A + + D + V V Sbjct: 694 IVRAGDRVRKGDVIADGPST-DQGELALGRNVLVAYMCYEGYNYEDAIIINERLVREDVF 752 Query: 941 DVRIFNRHGIDKNERSISVER------EQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 H + + + E E + +D DE+ I+ R +IL G+ Sbjct: 753 TSIHIEEHECEARDTKLGPEEITRDIPNVGEDVLKDL-DERGIIRIGAEVRPGDILVGKV 811 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G L + E R E Sbjct: 812 TPKGETELTAEERLLRAIFGEKAR-----------------EVRDTSLRVPHGESGIVVD 854 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 K+ + GD++ PGV +V+V+ MA K R + D Sbjct: 855 VKVFTRENGDELSPGVNELVRVY------------MA----QK----RKISQGD------ 888 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 G K + + + P + ++ Sbjct: 889 ----------------------------KMAGRHGNKGVISVIVPEEDMPFMPDGTPIDI 920 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 ++ +++ + G+ V++PVFDGA+E+ I ML A L +G++ Sbjct: 921 ILTPLGVPSRMNIGQIMEIHLGWAAKTLGMYVASPVFDGANEQDIREMLLKAHLPPNGKT 980 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 +LYDG TGEPFD VTVGY YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 981 VLYDGKTGEPFDNEVTVGYKYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRF 1040 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE+ Sbjct: 1041 GEMEVWALEAYGAAYTLQELLTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKEL 1100 Query: 1355 QALGLSIDLENSRTKNSAKME--EIPDFNKCELK 1386 Q+L L + + + E + D + +L+ Sbjct: 1101 QSLALDVKVLDESGNEIELRELDDEMDLSDRDLE 1134 >gi|182627157|ref|ZP_02954870.1| DNA-directed RNA polymerase, beta subunit [Clostridium perfringens D str. JGS1721] gi|177907460|gb|EDT70132.1| DNA-directed RNA polymerase, beta subunit [Clostridium perfringens D str. JGS1721] Length = 1234 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 429/955 (44%), Positives = 592/955 (61%), Gaps = 65/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K ++ ++P+LIE+Q SY FL + GL F + PI+ F+G Sbjct: 9 KRTRMSFAKVKDVAEMPNLIEIQLDSYKWFL----------DAGLYEVFDDINPISNFTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +LEFV Y D K+ V++C RD TYA PLK+ +RL K +IKEQ Sbjct: 59 NLVLEFVGYTLDMDNIKYSVEECKERDTTYAAPLKVAVRL---------QNKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG++++++ + GK L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNYNVDKT---GKKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ E DS D+I+VRID+ RK+P++ A+G S+ E+L F + + + Sbjct: 167 GAWLEYETDSNDVIYVRIDKTRKLPISILGRAMGFGSDQELLEYFGEEERFKATIEKDNT 226 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD----- 301 L+ K + GE ++S L L K + +G Sbjct: 227 KTKEEALLEIYK------RLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLA 280 Query: 302 ---CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + AEDIV+ TGE+ + G+ I + EEI + I + +L D V I Sbjct: 281 IGLRIANQIAAEDIVDKLTGEVLVAKGEKISRANAEEIQNRGINSVDVLVEDRVIR---I 337 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 D +K + ++ + + + Y + ++ Sbjct: 338 IGNHFVDIHKCVD----FDISDLNIRELVHYPTLREILDN-------YSDEETIKEEIKK 386 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 + P +HI K+DI A I + L G +DDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 387 NMTRLIP---KHIIKDDIFATISYQIGLAYNIGYVDDIDHLGNRRLRSVGELLQNQFRIG 443 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L RMER +KER++ D +++ PQ LIN +PV +A+ EFF SSQLSQ + N LS +TH Sbjct: 444 LSRMERVVKERMTIQDQEAITPQQLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHK 503 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDV+ +HYGR+CP ET EG NIGL++SL ++A+VN YGFI Sbjct: 504 RRLSALGPGGLSRERAGFEVRDVNHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFI 563 Query: 599 ETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 ETPYR V +VT ++ Y +A EE+ +AQAN LDE+G F ++ V R GE ++V Sbjct: 564 ETPYRVVDKAEGRVTGEIRYFTADEEDQYLVAQANEPLDENGCFIDKKVTVRDKGEVLVV 623 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P + +D +D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK AP VGTG+E Sbjct: 624 PSKDVDLMDVSPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPYAPIVGTGIE 683 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A SG AK AG V V A + ++ GVD YRL+KF+RSNQ TC+ Sbjct: 684 YKAAVDSGVLPKAKNAGEVVYVSANEVRVKRE------LDGGVDTYRLLKFKRSNQGTCI 737 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP+V GD V + +++ADGPSTDLG++ALG+N+ + F+ W GYN+ED+MLISE +V E Sbjct: 738 NQRPIVAKGDWVLKGEVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVRE 797 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEE+E ARDTKLGPEEITRDIPNVSE+ LK+IDE GII +GAEV GDILVG Sbjct: 798 DVFTSIHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDERGIIRIGAEVRSGDILVG 857 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV++F R D Sbjct: 858 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRENGD 912 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 185/598 (30%), Positives = 257/598 (42%), Gaps = 79/598 (13%) Query: 795 ADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV--SEDVFTSIHIEEFEVMAR 852 A +L + P G E + ++ +++ +++ EV + Sbjct: 654 ASRALMGSNMQRQAVPLLKPYAPIVGTGIEYKAAVDSGVLPKAKNAGEVVYVSANEVRVK 713 Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 G + R + I++ I+ G V G++L + + Sbjct: 714 RELDGGVDTYRLLKFKRSNQGTCINQRPIVAKGDWVLKGEVLADGPSTDLGEIALGKNIR 773 Query: 913 LRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELL 967 + I E A+ + + +R S + + R E E Sbjct: 774 MGFITWEGYNYEDAMLISEELVREDVFTSIHIEEYECEARDTKLGPEEITRDIPNVSEDA 833 Query: 968 ARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 +D DE+ I+ R +IL G+ G L + E R Sbjct: 834 LKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR--------- 883 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 E K+ + GDD+ PGV +V+ ++A KR I G Sbjct: 884 --------EVRDTSLRVPHGEAGIIVDVKVFTRENGDDLSPGVNELVRCYIAQKRKISVG 935 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E HLGWA Sbjct: 936 DKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASA 995 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 LG I + + D DI + Sbjct: 996 LGWHIATPVFDGATETDIEDCLEKAGYNRNGKTVL------------------------- 1030 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 G TGE FD VTVG +Y+LKL H+V DK+ Sbjct: 1031 ----------------------RDG-------RTGEEFDNEVTVGIMYILKLAHLVDDKI 1061 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDVVGR + Sbjct: 1062 HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVK 1121 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 YE+IV G + E G PESF VL+KE+QAL L + + N + E D ++ E+ Sbjct: 1122 TYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDNNQEVKFKELAEDDDEIEV 1179 >gi|227509924|ref|ZP_03939973.1| DNA-directed RNA polymerase subunit beta [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190530|gb|EEI70597.1| DNA-directed RNA polymerase subunit beta [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1205 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 428/963 (44%), Positives = 587/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY+ FL +GL+ F Sbjct: 4 LAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTNSYNWFL----------KDGLRETFD 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ VD+ + Y+ PL ITL+L + D Sbjct: 54 GIMPIDDFQGKLSLEFVDYQLLEPKYTVDEAREHEANYSAPLHITLKLTNHETD------ 107 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG+++ D + +G++ Y Sbjct: 108 ---EIKTQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYHEDTDK---NGRISY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E DSK+I +VRIDR RK+P+T + ALG S+ EI Sbjct: 162 GTTVIPNRGAWLEFETDSKNISYVRIDRTRKIPLTELIRALGFGSDGEITDILGDNDSLE 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + D V + + GE ES + L + K + +G Sbjct: 222 LTLEKD-VHKDTDDSRVEESLKDIYERLRPGEPKTAESSRSLLTARFFDPKRYDMAPVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L GL +AE + + ETGE+ ++ V+ + ++++ Y+D Sbjct: 281 YKTNKKLSLKNRLLGLTLAETLADPETGEVIVQKDTVVTKDVMKKLSP---------YLD 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 AY N +D+ + + I +V D Sbjct: 332 QKEFKAYTFNP--SDEAVVTEPMTVQIIKVYSANDP------------------------ 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + P +HI DIIA + +L+ G G+IDDID+LGNRR+RSVGE+ Sbjct: 366 --EKVVPLIGNDNIPLAFKHITPADIIASMNYFFNLQEGIGSIDDIDHLGNRRIRSVGEL 423 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 424 LQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 483 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+A Sbjct: 484 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA 543 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 RVN YGFIETPYR+V KVT+ + YL+A EE+N IAQANS L++DGSF +V R Sbjct: 544 RVNKYGFIETPYRRVDWTSHKVTDRIDYLTADEEDNFVIAQANSPLNDDGSFVNNVVMAR 603 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 I + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 604 HKSNNIEISIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVDPHA 663 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTG+E A SG A++ K AG VE VDA + IR +G LD Y+LMKF+ Sbjct: 664 PLVGTGIEYKAAHDSGVALICKFAGTVEYVDAREVRIRRDDGTLDK-------YKLMKFR 716 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V+VGD V ++++ADGPS + G+LALG+N +VAFM W GYNFED++ Sbjct: 717 RSNGGKNYNQRPIVRVGDHVDPDEVLADGPSMEGGELALGQNPIVAFMTWQGYNFEDAIA 776 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 ISER+V +DV+TSIHIEE+E RDTKLGPEE+TR+IPNV E+ LKN+DE G I +GAEV Sbjct: 777 ISERLVKDDVYTSIHIEEYESETRDTKLGPEEMTREIPNVGEDALKNLDEGGTIRIGAEV 836 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 + GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G + DV++F R Sbjct: 837 HDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTRE 896 Query: 949 GID 951 D Sbjct: 897 NGD 899 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 172/522 (32%), Positives = 243/522 (46%), Gaps = 67/522 (12%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 G + + + G KN ++ I+ VG V+P ++L + +G + + Sbjct: 701 RRDDGTLDKYKLMKFRRSNGGKNYNQRPIVRVGDHVDPDEVLADGPSMEG-GELALGQNP 759 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 + A + + D + V D + H + + + E+ + Sbjct: 760 IVAFMTWQGYNFEDAI----AISERLVKDDVYTSIHIEEYESETRDTKLGPEEMTREIPN 815 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 + L I G G K T +S R F + +V+ Sbjct: 816 VGEDALKN--LDEGGTIRIGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVR 873 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + K+ + GD++ PGV R+V+V++A KR IQ GDKM+G Sbjct: 874 DTSLRVPHGGGGIIQDV------KVFTRENGDELSPGVNRMVRVYIAQKRKIQVGDKMSG 927 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG VS ++P EDMPFL DGTPVDI+L+P+GVPSRMN+GQ+ E HLG A LG + Sbjct: 928 RHGNKGTVSVVIPEEDMPFLPDGTPVDIMLSPMGVPSRMNIGQVLELHLGMAARKLGIHV 987 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D ++ DI Sbjct: 988 ATPVFDGASDKDIWNAVKEAGMPKDGKYIL------------------------------ 1017 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G++ GEPFD+P+ VG ++ LKL HMV DK++ARS Sbjct: 1018 -----------------YDGRT-------GEPFDKPIAVGVMHYLKLAHMVDDKIHARSI 1053 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+I Sbjct: 1054 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAI 1113 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 V G + G PESF VLVKE+Q+LGL + + +S K Sbjct: 1114 VKGEPIPKPGVPESFRVLVKELQSLGLDMKVLDSSHKEIELR 1155 >gi|315028694|gb|EFT40626.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX4000] Length = 1207 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 593/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 54 DILPIDDFQGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKSQEVFFGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTIEKD-LHKNASDSRTEEGLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQIMETL-------------- 326 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 YI N L + +DA++ + T V + + Sbjct: 327 ----GEYIDNGLNSVTYYPSEDAVV--------TEPMTIQVIQVLSPKDP---------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N D V+ +R DI+A + +L G +DDID+LGNRR+RSVGE+ Sbjct: 365 --ERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +T+ RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTYKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ V YL+A E++ +AQANS L+EDG+F ++V R Sbjct: 543 KVNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL++ + Sbjct: 603 LQSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRS 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDK-------YMVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 175/499 (35%), Positives = 237/499 (47%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + E M + +L A + + D + V V Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKDDVY 786 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + ++L G+ Sbjct: 787 TSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVGKVT 846 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 847 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 889 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 890 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 949 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 950 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA--------------- 994 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D+ V + T ++DG Sbjct: 995 -------------TDEDVWETVREAGMASDAKTVLYDG---------------------- 1019 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD ++VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1020 ----RTGEPFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1075 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1135 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + Sbjct: 1136 SLGLDMRVLDIEEAEIELR 1154 >gi|23097567|ref|NP_691033.1| DNA-directed RNA polymerase subunit beta [Oceanobacillus iheyensis HTE831] gi|41017735|sp|Q8ETY8|RPOB_OCEIH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|22775790|dbj|BAC12068.1| DNA-directed RNA polymerase beta subunit [Oceanobacillus iheyensis HTE831] Length = 1179 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 432/964 (44%), Positives = 595/964 (61%), Gaps = 75/964 (7%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M +V G R R+ + + E++++P+LIE+Q ASYD FL EGL+ F+ Sbjct: 1 MTGQLVQYGRHRQRRSYARINEVLELPNLIEIQTASYDWFL----------EEGLREMFQ 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV Y PK+ VD+ RD+TY PL++ +RLI Sbjct: 51 DISPIEDFTGNLSLEFVDYSLGDPKYPVDEAKERDVTYNAPLRVKVRLI---------NN 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 ++KEQ ++MGD PLMT+ GTF+I G +R++VSQL RSP ++++ + +GK Sbjct: 102 ETGEVKEQEVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYYNEKIDK---NGKRGI 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KDI +VRIDR RK+P+T L ALG ++ EI Sbjct: 159 GATVIPNRGAWLEFETDAKDIAYVRIDRTRKLPITVLLRALGFGTDQEITDLLGENEYLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + L+ + GE +E+ K L K + +G Sbjct: 219 NTLEKDNTENAEKALL------EIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLAHVGR 272 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE IV+ ETGE+ E G+ ++ K L++I L Sbjct: 273 YKMNKKLHMKNRLFNQILAEPIVDPETGEVIAEKGEKLERKLLDKI----------LPYL 322 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + + + L + + + +++ P D + Sbjct: 323 ERAEDRFGESVLSPHEGVLEDEITIQSVKIIDPTDPN----------------------- 359 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 G ++ + N +DV++I DI++ I +L + G DDID+LGNRR+RSVGE+ Sbjct: 360 -GERELTVIGNGGVTNDVKNITPADILSSISYFFNLLHEVGGTDDIDHLGNRRLRSVGEL 418 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D SV PQ LIN +PV++++ EFF SSQLSQ + N Sbjct: 419 LQNQFRIGLSRMERVVRERMSIQDTSSVTPQQLINIRPVIASIKEFFGSSQLSQFMDQTN 478 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 479 PLGELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 538 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIE+PYR+V GKVTN + YL+A E++N +AQANS LDED F E V R Sbjct: 539 KVNKFGFIESPYRRVDPETGKVTNKIDYLTADEQDNYIVAQANSPLDEDSRFQNEEVISR 598 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 + I+V R+KID++D SPKQVVS A + IPFLENDDSNR LMG NMQRQAVPL+K +A Sbjct: 599 FQEDNIVVSRDKIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMKPQA 658 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPS-TSGVDIYRLMKF 767 P VGTGME V K SGAA++ G++E+V+A + +R + +D Y L K+ Sbjct: 659 PIVGTGMEYVNGKDSGAAVICHHDGVIERVEAKEVYVRRISIVDGKEVEGDLDRYGLQKY 718 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 +RSNQ TC NQRP+V GD V + +++ADGPS + G+LALG+N+LV FM W GYN+ED++ Sbjct: 719 KRSNQGTCYNQRPIVSQGDRVTKGEVLADGPSMEDGELALGQNVLVGFMTWEGYNYEDAI 778 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++SER+V +DV+TSIHIEEFE ARDTKLGPEEITRDIPNV E+ LKN+DE GII VGAE Sbjct: 779 IMSERLVKDDVYTSIHIEEFESEARDTKLGPEEITRDIPNVGEDALKNLDEHGIIRVGAE 838 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V+DV+IFNR Sbjct: 839 VTDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFNR 898 Query: 948 HGID 951 D Sbjct: 899 EDGD 902 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 266/1086 (24%), Positives = 398/1086 (36%), Gaps = 183/1086 (16%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 D + N Y+RNTL D ++ + ALL+IY +RPG+ T A+S+ FFD +YDL Sbjct: 208 TDLLGENEYLRNTLEKDNTENAEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDL 267 Query: 409 STVGRVKMNMRLNLD--------------------TPDDVRHIRKEDIIAIIKILVDLRN 448 + VGR KMN +L++ + + ++ + I+ L + Sbjct: 268 AHVGRYKMNKKLHMKNRLFNQILAEPIVDPETGEVIAEKGEKLERKLLDKILPYLERAED 327 Query: 449 GKGTIDDIDNLGNRRVRSV--GEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDL-IN 505 G + G + + R I + D+ ++ P D+ + Sbjct: 328 RFGESVLSPHEGVLEDEITIQSVKIIDPTDPNGERELTVIGNGGVTNDVKNITPADILSS 387 Query: 506 AKPVVSAVCEFFCSSQLSQLEEHV--NSLSRITHTRRLSALGQGGVARAR-AGVEMRDVH 562 + + E + + L + + + R+ V R R + + V Sbjct: 388 ISYFFNLLHEVGGTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTSSVT 447 Query: 563 PTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK----------------VC 606 P I P S G + N G + R V Sbjct: 448 PQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRERAGFEVR 507 Query: 607 DGKVTNDVVYLSAMEEENRYIAQANS--SLDEDGSFTEELVFCRCAGEEILVPREKIDFI 664 D ++ E I NS S + F R E KID++ Sbjct: 508 DVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNKFGFIESPYRRVDPETGKVTNKIDYL 567 Query: 665 DASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSG 724 A + +A + P E Q + V E V S Sbjct: 568 TADEQDNYIVAQANSPLDE---------DSRFQNEEVISRFQEDNIVV----------SR 608 Query: 725 AAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 I + V A I + QR Q P+V Sbjct: 609 DKIDYMDVSPKQVVSAATACI-----PFLENDDSNRALMGANMQRQAVPLMKPQAPIVGT 663 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 G E + ++ + I + E + Sbjct: 664 GMEYVNGKDSGAAVICHHDGVIERVEAKEVYV--------RRISIVDGKEVEGDLDRYGL 715 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +++ + + G R I+ G V G++L + + Sbjct: 716 QKY----KRSNQGTCYNQRP----------------IVSQGDRVTKGEVLADGPS-MEDG 754 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 + + +L + + D + + K++ S+ E+ Sbjct: 755 ELALGQNVLVGFMTWEGYNYEDAIIMS----------------ERLVKDDVYTSIHIEEF 798 Query: 965 ELLARDKDDEQVILDRNI----------YSRLMEILCGQNAVSGPKGFKKSTVLSSDLIS 1014 E ARD + R+I I G G K T +S Sbjct: 799 ESEARDTKLGPEEITRDIPNVGEDALKNLDEHGIIRVGAEVTDGDILVGKVTPKGVTELS 858 Query: 1015 EYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVV 1074 R F + +V+ + KI + GD++PPGV ++V Sbjct: 859 AEERLLHAIFGEKAREVRDTSLRVPHGGGGIV------LDVKIFNREDGDELPPGVNQLV 912 Query: 1075 KVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVG 1134 + ++ KR I GDKMAGRHGNKG++S+ILP EDMP+L DGTP+DI+LNPLGVPSRMN+G Sbjct: 913 RAYIVQKRKIHEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIG 972 Query: 1135 QIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVL 1194 Q+FE HLG A LG + S + D D+ Sbjct: 973 QVFELHLGMAARQLGIHVASPVFDGAREEDVWETLEEAGMPRDAK--------------- 1017 Query: 1195 RVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYI 1254 T ++DG TGE FD V+VG + Sbjct: 1018 -------------TVLYDG--------------------------RTGEAFDNRVSVGVM 1038 Query: 1255 YMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEM 1314 YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+ Sbjct: 1039 YMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEI 1098 Query: 1315 LTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 LT+KSDD VGR + YE+IV G++ E G PESF VL+KE+Q+LG+ + + +S Sbjct: 1099 LTVKSDDTVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKMLSSNEDEIDMR 1158 Query: 1375 EEIPDF 1380 E + Sbjct: 1159 ELEEEE 1164 >gi|327536346|gb|AEA95180.1| DNA-directed RNA polymerase subunit beta [Enterococcus faecalis OG1RF] Length = 1207 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 592/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 54 DILPIDDFQGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKSQEVFFGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTIEKD-LHKNASDSRTEEGLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQIMETL-------------- 326 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 YI N L + +DA++ + T V + + Sbjct: 327 ----GEYIDNGLNSVTYYPSEDAVV--------TEPMTIQVIQVLSPKDP---------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N D V+ +R DI+A + +L G +DDID+LGNRR+RSVGE+ Sbjct: 365 --ERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +T RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTRKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ V YL+A E++ +AQANS L+EDG+F ++V R Sbjct: 543 KVNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL++ + Sbjct: 603 LQSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRS 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDK-------YMVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 175/499 (35%), Positives = 237/499 (47%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + E M + +L A + + D + V V Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKDDVY 786 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + ++L G+ Sbjct: 787 TSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVGKVT 846 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 847 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 889 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 890 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 949 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 950 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA--------------- 994 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D+ V + T ++DG Sbjct: 995 -------------TDEDVWETVREAGMASDAKTVLYDG---------------------- 1019 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD ++VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1020 ----RTGEPFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1075 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1135 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + Sbjct: 1136 SLGLDMRVLDIEEAEIELR 1154 >gi|281419555|ref|ZP_06250566.1| DNA-directed RNA polymerase, beta subunit [Clostridium thermocellum JW20] gi|281406777|gb|EFB37044.1| DNA-directed RNA polymerase, beta subunit [Clostridium thermocellum JW20] Length = 1250 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 458/955 (47%), Positives = 603/955 (63%), Gaps = 64/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 VR + K E+ID+P+LIE+QK SY+ FL EG + FK V PIT ++G Sbjct: 9 RNVRMSYSKIDEVIDMPNLIEIQKNSYEQFL----------KEGFKEVFKDVNPITDYTG 58 Query: 71 AAMLEFVSYEFDPP-KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEFV Y D P K+ VD+C RD TYA PLK+ +RLI K ++KEQ Sbjct: 59 NLILEFVDYSLDEPPKYSVDECKERDATYAAPLKVKVRLI---------NKETGEVKEQE 109 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 I+MGD PLMT+ GTF+I G +R++VSQL RSPGI++ + +GK L++ +IP++G Sbjct: 110 IFMGDFPLMTETGTFIINGAERVIVSQLVRSPGIYYA---MKIDKAGKQLFSNTVIPNRG 166 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ E DS D++ VRIDR RK+P+T + ALG ++ EI F Sbjct: 167 AWLEYETDSNDVLSVRIDRTRKLPLTVLVRALGYGTDLEITELFGEDERILATIQKDSTK 226 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD------ 301 L+ K + GE +ES K L GL K + G Sbjct: 227 TEEEGLLEIYK------RLRPGEPPTVESAKALLHGLFFDPKRYDLAKPGRFKFNKKLSI 280 Query: 302 --CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + G E+I + +TGEI + G+ I + E I ++ + + IL VD N Sbjct: 281 AARIHGFIAGENIKDPDTGEIIVAEGETISREKAETIQNAGVNTV-ILRVDGKNVKVIGN 339 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 + ++DI R + D + E + + + + Sbjct: 340 D-------------MVDIKRYV-DFDPKEIGINEKVKRDVLMEILEEYKGKGDDAIKKAL 385 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 +HI KEDII+ I ++ L G G+ DDID+LGNRR+RSVGE+L+NQ+R+GL Sbjct: 386 QERIDDLIPKHITKEDIISSISYIIGLSYGIGSTDDIDHLGNRRLRSVGELLQNQFRIGL 445 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RMER ++ER++ D+D PQ LIN +PV +A+ EFF SSQLSQ + N L+ +TH R Sbjct: 446 SRMERVVRERMTIQDLDVATPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLAELTHKR 505 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+ SL+++ARVN YGFIE Sbjct: 506 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARVNEYGFIE 565 Query: 600 TPYRKVCDG---KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 TPYRKV KVTN++VYL+A EE+ IAQAN LDE+G F V CR E I V Sbjct: 566 TPYRKVSKEEPGKVTNEIVYLTADEEDEYIIAQANEPLDEEGRFISNKVVCRYKEEFIEV 625 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 KIDF+D SPKQ+VS+A S+IPFLENDD+NR LMG NMQRQAVPL+K E+P VGTG+E Sbjct: 626 DPSKIDFMDVSPKQIVSVATSMIPFLENDDANRALMGANMQRQAVPLIKTESPIVGTGIE 685 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A+ SG I+AK G+VE+V A I+IR+ +G D Y+L+K+ RSNQ TC+ Sbjct: 686 YRAARDSGVVILAKNPGVVEKVTANEIIIRTKDGKRD-------TYKLLKYMRSNQGTCI 738 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP+VK G+EV D+IADGPSTD G++ALG+N+LV FM W GYN+ED++LISER+V + Sbjct: 739 NQRPIVKKGEEVEAGDVIADGPSTDNGEIALGKNVLVGFMTWEGYNYEDAILISERLVKD 798 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEE+E ARDTKLGPE+ITR+IPNVSE+ LK+++ GII +GAEV GDILVG Sbjct: 799 DVFTSIHIEEYEAEARDTKLGPEDITREIPNVSEDALKDLNSEGIIRIGAEVRAGDILVG 858 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG VVDV+IF R D Sbjct: 859 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKIFTRENGD 913 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 170/532 (31%), Positives = 236/532 (44%), Gaps = 77/532 (14%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 TK G + + + + I++ I+ G EV GD++ + + + + Sbjct: 715 RTKDGKRDTYKLLKYMRSNQGTCINQRPIVKKGEEVEAGDVIADGPSTDN-GEIALGKNV 773 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARD 970 L + + D L V V + + + + E +I ++ D Sbjct: 774 LVGFMTWEGYNYEDAILISERLVKDDVFTSIHIEEYEAEARDTKLGPEDITREIPNVSED 833 Query: 971 KDDEQV---ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 + I+ R +IL G+ G L + E R Sbjct: 834 ALKDLNSEGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR--------- 884 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 E KI + GD++ PGV ++V+V+VA KR I G Sbjct: 885 --------EVRDTSLRVPHGESGIVVDVKIFTRENGDELAPGVNKLVRVYVAQKRKISVG 936 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNK GV SR+ Sbjct: 937 DKMAGRHGNK----------------------------GVISRI---------------- 952 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 ++ + L+ V+ +++ V G V+ Sbjct: 953 --LPVEDMPFLPDGTP--------LDIVLNPLGVPSRMNIGQVLEVHLGYAAKALGWKVA 1002 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA EE I LR A L E G+SILYDG TGEPF+ VTVGY+YMLKL H+V DK+ Sbjct: 1003 TPVFDGATEEDIVQTLRKAGLAEDGKSILYDGRTGEPFENRVTVGYMYMLKLAHLVDDKI 1062 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + Sbjct: 1063 HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVK 1122 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 YE+IV G + E G PESF VL+KE+Q+L L + + + + A E + D Sbjct: 1123 TYEAIVKGENVPEPGIPESFKVLIKELQSLCLDVKVYSEEQEEIAIKESVED 1174 >gi|125975206|ref|YP_001039116.1| DNA-directed RNA polymerase subunit beta [Clostridium thermocellum ATCC 27405] gi|158513257|sp|A3DIZ4|RPOB_CLOTH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|125715431|gb|ABN53923.1| DNA-directed RNA polymerase subunit beta [Clostridium thermocellum ATCC 27405] Length = 1250 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 459/955 (48%), Positives = 604/955 (63%), Gaps = 64/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 VR + K E+ID+P+LIE+QK SY+ FL EG + FK V PIT ++G Sbjct: 9 RNVRMSYSKIDEVIDMPNLIEIQKNSYEQFL----------KEGFKEVFKDVNPITDYTG 58 Query: 71 AAMLEFVSYEFDPP-KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEFV Y D P K+ VD+C RD TYA PLK+ +RLI K ++KEQ Sbjct: 59 NLILEFVDYSLDEPPKYSVDECKERDATYAAPLKVKVRLI---------NKETGEVKEQE 109 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 I+MGD PLMT+ GTF+I G +R++VSQL RSPGI++ + +GK L++ +IP++G Sbjct: 110 IFMGDFPLMTETGTFIINGAERVIVSQLVRSPGIYYA---MKIDKAGKQLFSNTVIPNRG 166 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ E DS D++ VRIDR RK+P+T + ALG ++ EI F Sbjct: 167 AWLEYETDSNDVLSVRIDRTRKLPLTVLVRALGYGTDLEITELFGEDERILATIQKDSTK 226 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD------ 301 L+ K + GE +ES K L GL K + G Sbjct: 227 TEEEGLLEIYK------RLRPGEPPTVESAKALLHGLFFDPKRYDLAKPGRFKFNKKLSI 280 Query: 302 --CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + G E+I + +TGEI + G+ I + E I ++ + + IL VD N Sbjct: 281 AARIHGFIAGENIKDPDTGEIIVAEGETISREKAETIQNAGVNTV-ILRVDGKNVKVIGN 339 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 + ++DI R + D + E + + + + Sbjct: 340 D-------------MVDIKRYV-DFDPKEIGINEKVKRDVLMEILEEYKGKGDDAIKKAL 385 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 +HI KEDII+ I ++ L G G+ DDID+LGNRR+RSVGE+L+NQ+R+GL Sbjct: 386 QERIDDLIPKHITKEDIISSISYIIGLSYGIGSTDDIDHLGNRRLRSVGELLQNQFRIGL 445 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RMER ++ER++ D+D V PQ LIN +PV +A+ EFF SSQLSQ + N L+ +TH R Sbjct: 446 SRMERVVRERMTIQDLDVVTPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLAELTHKR 505 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+ SL+++ARVN YGFIE Sbjct: 506 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARVNEYGFIE 565 Query: 600 TPYRKVCDG---KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 TPYRKV KVTN++VYL+A EE+ IAQAN LDE+G F V CR E I V Sbjct: 566 TPYRKVSKEEPGKVTNEIVYLTADEEDEYIIAQANEPLDEEGRFISNKVVCRYKEEFIEV 625 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 KIDF+D SPKQ+VS+A S+IPFLENDD+NR LMG NMQRQAVPL+K E+P VGTG+E Sbjct: 626 DPSKIDFMDVSPKQIVSVATSMIPFLENDDANRALMGANMQRQAVPLIKTESPIVGTGIE 685 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A+ SG I+AK G+VE+V A I+IR+ +G D Y+L+K+ RSNQ TC+ Sbjct: 686 YRAARDSGVVILAKNPGVVEKVTANEIIIRTKDGKRD-------TYKLLKYMRSNQGTCI 738 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP+VK G+EV D+IADGPSTD G++ALG+N+LV FM W GYN+ED++LISER+V + Sbjct: 739 NQRPIVKKGEEVEAGDVIADGPSTDNGEIALGKNVLVGFMTWEGYNYEDAILISERLVKD 798 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEE+E ARDTKLGPE+ITR+IPNVSE+ LK+++ GII +GAEV GDILVG Sbjct: 799 DVFTSIHIEEYEAEARDTKLGPEDITREIPNVSEDALKDLNSEGIIRIGAEVRAGDILVG 858 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG VVDV+IF R D Sbjct: 859 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKIFTRENGD 913 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 169/532 (31%), Positives = 235/532 (44%), Gaps = 77/532 (14%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 TK G + + + + I++ I+ G EV GD++ + + + + Sbjct: 715 RTKDGKRDTYKLLKYMRSNQGTCINQRPIVKKGEEVEAGDVIADGPSTDN-GEIALGKNV 773 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARD 970 L + + D L V V + + + + E +I ++ D Sbjct: 774 LVGFMTWEGYNYEDAILISERLVKDDVFTSIHIEEYEAEARDTKLGPEDITREIPNVSED 833 Query: 971 KDDEQV---ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 + I+ R +IL G+ G L + E R Sbjct: 834 ALKDLNSEGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR--------- 884 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 E KI + GD++ PGV ++V+V+VA KR I G Sbjct: 885 --------EVRDTSLRVPHGESGIVVDVKIFTRENGDELAPGVNKLVRVYVAQKRKISVG 936 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNK GV SR+ Sbjct: 937 DKMAGRHGNK----------------------------GVISRI---------------- 952 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 ++ + L+ V+ +++ V G V+ Sbjct: 953 --LPVEDMPFLPDGTP--------LDIVLNPLGVPSRMNIGQVLEVHLGYAAKALGWKVA 1002 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA EE I LR A L E G+SILYDG TGEPF+ VTVGY+YMLKL H+V DK+ Sbjct: 1003 TPVFDGATEEDIVQTLRKAGLAEDGKSILYDGRTGEPFENRVTVGYMYMLKLAHLVDDKI 1062 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + Sbjct: 1063 HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVK 1122 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 YE+IV G + E G PE F VL+KE+Q+L L + + + + A E + D Sbjct: 1123 TYEAIVKGENVPEPGIPECFKVLIKELQSLCLDVKVYSEEQEEIAIKESVED 1174 >gi|256003132|ref|ZP_05428124.1| DNA-directed RNA polymerase, beta subunit [Clostridium thermocellum DSM 2360] gi|255992823|gb|EEU02913.1| DNA-directed RNA polymerase, beta subunit [Clostridium thermocellum DSM 2360] gi|316939370|gb|ADU73404.1| DNA-directed RNA polymerase, beta subunit [Clostridium thermocellum DSM 1313] Length = 1250 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 459/955 (48%), Positives = 604/955 (63%), Gaps = 64/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 VR + K E+ID+P+LIE+QK SY+ FL EG + FK V PIT ++G Sbjct: 9 RNVRMSYSKIDEVIDMPNLIEIQKNSYEQFL----------KEGFKEVFKDVNPITDYTG 58 Query: 71 AAMLEFVSYEFDPP-KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEFV Y D P K+ VD+C RD TYA PLK+ +RLI K ++KEQ Sbjct: 59 NLILEFVDYSLDEPPKYSVDECKERDATYAAPLKVKVRLI---------NKETGEVKEQE 109 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 I+MGD PLMT+ GTF+I G +R++VSQL RSPGI++ + +GK L++ +IP++G Sbjct: 110 IFMGDFPLMTETGTFIINGAERVIVSQLVRSPGIYYA---MKIDKAGKQLFSNTVIPNRG 166 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ E DS D++ VRIDR RK+P+T + ALG ++ EI F Sbjct: 167 AWLEYETDSNDVLSVRIDRTRKLPLTVLVRALGYGTDLEITELFGEDERILATIQKDSTK 226 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD------ 301 L+ K + GE +ES K L GL K + G Sbjct: 227 TEEEGLLEIYK------RLRPGEPPTVESAKALLHGLFFDPKRYDLAKPGRFKFNKKLSI 280 Query: 302 --CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + G E+I + +TGEI + G+ I + E I ++ + + IL VD N Sbjct: 281 AARIHGFIAGENIKDPDTGEIIVAEGETISREKAETIQNAGVNTV-ILRVDGKNVKVIGN 339 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 + ++DI R + D + E + + + + Sbjct: 340 D-------------MVDIKRYV-DFDPKEIGINEKVKRDVLMEILEEYKGKGDDAIKKAL 385 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 +HI KEDII+ I ++ L G G+ DDID+LGNRR+RSVGE+L+NQ+R+GL Sbjct: 386 QERIDDLIPKHITKEDIISSISYIIGLSYGIGSTDDIDHLGNRRLRSVGELLQNQFRIGL 445 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RMER ++ER++ D+D V PQ LIN +PV +A+ EFF SSQLSQ + N L+ +TH R Sbjct: 446 SRMERVVRERMTIQDLDVVTPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLAELTHKR 505 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+ SL+++ARVN YGFIE Sbjct: 506 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARVNEYGFIE 565 Query: 600 TPYRKVCDG---KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 TPYRKV KVTN++VYL+A EE+ IAQAN LDE+G F V CR E I V Sbjct: 566 TPYRKVSKEEPGKVTNEIVYLTADEEDEYIIAQANEPLDEEGRFISNKVVCRYKEEFIEV 625 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 KIDF+D SPKQ+VS+A S+IPFLENDD+NR LMG NMQRQAVPL+K E+P VGTG+E Sbjct: 626 DPSKIDFMDVSPKQIVSVATSMIPFLENDDANRALMGANMQRQAVPLIKTESPIVGTGIE 685 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A+ SG I+AK G+VE+V A I+IR+ +G D Y+L+K+ RSNQ TC+ Sbjct: 686 YRAARDSGVVILAKNPGVVEKVTANEIIIRTKDGKRD-------TYKLLKYMRSNQGTCI 738 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP+VK G+EV D+IADGPSTD G++ALG+N+LV FM W GYN+ED++LISER+V + Sbjct: 739 NQRPIVKKGEEVEAGDVIADGPSTDNGEIALGKNVLVGFMTWEGYNYEDAILISERLVKD 798 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEE+E ARDTKLGPE+ITR+IPNVSE+ LK+++ GII +GAEV GDILVG Sbjct: 799 DVFTSIHIEEYEAEARDTKLGPEDITREIPNVSEDALKDLNSEGIIRIGAEVRAGDILVG 858 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG VVDV+IF R D Sbjct: 859 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKIFTRENGD 913 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 170/532 (31%), Positives = 236/532 (44%), Gaps = 77/532 (14%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 TK G + + + + I++ I+ G EV GD++ + + + + Sbjct: 715 RTKDGKRDTYKLLKYMRSNQGTCINQRPIVKKGEEVEAGDVIADGPSTDN-GEIALGKNV 773 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARD 970 L + + D L V V + + + + E +I ++ D Sbjct: 774 LVGFMTWEGYNYEDAILISERLVKDDVFTSIHIEEYEAEARDTKLGPEDITREIPNVSED 833 Query: 971 KDDEQV---ILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQ 1027 + I+ R +IL G+ G L + E R Sbjct: 834 ALKDLNSEGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR--------- 884 Query: 1028 DEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSG 1087 E KI + GD++ PGV ++V+V+VA KR I G Sbjct: 885 --------EVRDTSLRVPHGESGIVVDVKIFTRENGDELAPGVNKLVRVYVAQKRKISVG 936 Query: 1088 DKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVG 1147 DKMAGRHGNK GV SR+ Sbjct: 937 DKMAGRHGNK----------------------------GVISRI---------------- 952 Query: 1148 LGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVS 1207 ++ + L+ V+ +++ V G V+ Sbjct: 953 --LPVEDMPFLPDGTP--------LDIVLNPLGVPSRMNIGQVLEVHLGYAAKALGWKVA 1002 Query: 1208 TPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267 TPVFDGA EE I LR A L E G+SILYDG TGEPF+ VTVGY+YMLKL H+V DK+ Sbjct: 1003 TPVFDGATEEDIVQTLRKAGLAEDGKSILYDGRTGEPFENRVTVGYMYMLKLAHLVDDKI 1062 Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTR 1327 +ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + Sbjct: 1063 HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVK 1122 Query: 1328 VYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 YE+IV G + E G PESF VL+KE+Q+L L + + + + A E + D Sbjct: 1123 TYEAIVKGENVPEPGIPESFKVLIKELQSLCLDVKVYSEEQEEIAIKESVED 1174 >gi|289566323|ref|ZP_06446753.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium D344SRF] gi|289161899|gb|EFD09769.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium D344SRF] Length = 1205 Score = 845 bits (2184), Expect = 0.0, Method: Composition-based stats. Identities = 419/963 (43%), Positives = 589/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA VV G R R+ F + E++++ +LIE+Q SY FL +EGL+ F+ Sbjct: 1 MAGHVVKYGKHRERRSFARISEVLELSNLIEIQTDSYQWFL----------DEGLREMFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 51 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 102 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 159 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 219 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 278 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 325 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + +V P D Sbjct: 326 FIDNGLNSVTYYPSEDGVVTDPMTVQVIKVFSPRDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 362 --EREVNVIGNGYPEAAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +T+ RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 480 PLGELTYKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 540 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 660 PWVGTGMEYKSAHDSGAALLCKHDGVVEYVDASEIRVRRDNGALDK-------YDVTKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 713 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 833 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 892 Query: 949 GID 951 D Sbjct: 893 AGD 895 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 176/504 (34%), Positives = 236/504 (46%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + Sbjct: 725 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 775 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 776 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 827 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 828 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 886 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 887 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 941 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 942 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 991 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 992 ------------------SDEDVWETVREAGMASDAKTVLYDG----------------- 1016 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1017 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1067 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1068 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1127 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + Sbjct: 1128 VKELQSLGLDMRVLDIEETEIELR 1151 >gi|315159665|gb|EFU03682.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecalis TX0312] Length = 1207 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 592/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 54 DILPIDDFQGNLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL SPG++F G+ +GK + Sbjct: 105 ETGEIKSQEVFFGDFPLMTEMGTFIINGAERVIVSQLVHSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTIEKD-LHKNASDSRTEEGLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQIMETL-------------- 326 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 YI N L + +DA++ + T V + + Sbjct: 327 ----GEYIDNGLNSVTYYPSEDAVV--------TEPMTIQVIQVLSPKDP---------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N D V+ +R DI+A + +L G +DDID+LGNRR+RSVGE+ Sbjct: 365 --ERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V G+VT+ V YL+A E++ +AQANS L+EDG+F ++V R Sbjct: 543 KVNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL++ + Sbjct: 603 LQSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRS 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDK-------YMVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 175/499 (35%), Positives = 237/499 (47%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + E M + +L A + + D + V V Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKDDVY 786 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + ++L G+ Sbjct: 787 TSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVGKVT 846 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 847 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 889 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 890 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 949 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 950 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA--------------- 994 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D+ V + T ++DG Sbjct: 995 -------------TDEDVWETVREAGMASDAKTVLYDG---------------------- 1019 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD ++VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1020 ----RTGEPFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1075 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1076 EMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1135 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + Sbjct: 1136 SLGLDMRVLDIEEAEIELR 1154 >gi|314949429|ref|ZP_07852770.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium TX0082] gi|313644260|gb|EFS08840.1| DNA-directed RNA polymerase, beta subunit [Enterococcus faecium TX0082] Length = 1208 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 418/963 (43%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 4 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V + D Y+ PL +TLRL + Sbjct: 54 DILPIDDFNGNLSLEFVDYELKEPKYTVAEARAHDANYSAPLHVTLRLT---------NR 104 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 105 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 162 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSETLR 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + K + +G Sbjct: 222 NTVEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPKRYDLANVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G V+ + +E + Sbjct: 281 YKVNKKLDLKTRLLNLTLAETLVDPETGEIIVEKGTVLTHQVMETL------------AP 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 ++N ++ + + +V P D Sbjct: 329 FIDNGLNSVTYYPSEDGVVTDPMTVQVIKVFSPRDP------------------------ 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 ++N+ N V+ +R DIIA + ++L G G +DDID+LGNRR+RSVGE+ Sbjct: 365 --EREVNVIGNGYPEAAVKTVRPADIIASMSYFLNLMEGIGNVDDIDHLGNRRIRSVGEL 422 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 423 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 482 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +T R LSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+A Sbjct: 483 PLGELTRKRCLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA 542 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN +GFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +++V R Sbjct: 543 KVNKFGFIETPYRRVDRETGRVTDQIDYLTADIEDHYIVAQANSPLNEDGTFAQDVVMAR 602 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + V +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 603 AQSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 662 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 663 PWVGTGMEYKSAHDSGAALLCKHDGVVEYVDASEIRVRRDNGALDK-------YDVTKFR 715 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRP+V +G++V + D +ADGPS + G++ALG+N+LV FM W GYN+ED+++ Sbjct: 716 RSNSGTSYNQRPIVHLGEKVEKGDTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAII 775 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 776 MSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 835 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 QDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 895 Query: 949 GID 951 D Sbjct: 896 AGD 898 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 176/504 (34%), Positives = 236/504 (46%), Gaps = 87/504 (17%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 I+ +G +V GD L + + M + +L + + D + Sbjct: 728 IVHLGEKVEKGDTLADGPS-MEQGEMALGQNVLVGFMTWEGYNYEDAIIMSR-------- 778 Query: 941 DVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEIL 990 + K++ S+ E+ E ARD + R I + I Sbjct: 779 --------RLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIR 830 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G G K T +S R F + +V+ + + Sbjct: 831 IGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV- 889 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMP Sbjct: 890 -----KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMP 944 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 FL DGTP+DI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 945 FLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA---------- 994 Query: 1171 FLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDE 1230 D+ V + T ++DG Sbjct: 995 ------------------SDEDVWETVREAGMASDAKTVLYDG----------------- 1019 Query: 1231 SGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRG 1290 TGEPFD V+VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ G Sbjct: 1020 ---------RTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFG 1070 Query: 1291 GQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVL 1350 GQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VL Sbjct: 1071 GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVL 1130 Query: 1351 VKEMQALGLSIDLENSRTKNSAKM 1374 VKE+Q+LGL + + + Sbjct: 1131 VKELQSLGLDMRVLDIEETEIELR 1154 >gi|187932557|ref|YP_001884466.1| DNA-directed RNA polymerase subunit beta [Clostridium botulinum B str. Eklund 17B] gi|226699388|sp|B2TIG8|RPOB_CLOBB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|187720710|gb|ACD21931.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum B str. Eklund 17B] Length = 1249 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 441/956 (46%), Positives = 602/956 (62%), Gaps = 67/956 (7%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R FGK ++ ++P+LIEVQ SY FL EGL F+ + PIT F+G Sbjct: 9 KRTRMSFGKVKDVTEMPNLIEVQLDSYQWFLR----------EGLHEVFEDINPITNFTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +LEFV Y+ D K+ V++C RD TYA PLK+++RL +IKEQ Sbjct: 59 NLVLEFVDYKLDMDNIKYSVEECKERDATYAAPLKVSVRL---------QNNETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++++ + GK LY+ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNYSIDKT---GKKLYSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ E DS DII+VRID+ RK+P+T A+G S+ E+L F + + Sbjct: 167 GAWLEYETDSNDIIYVRIDKTRKLPITILARAMGFGSDQELLDFFGEDERFRASIEKDNT 226 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD----- 301 L+ K + GE ++S L L K + +G Sbjct: 227 KTREEGLLEIYK------RLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLA 280 Query: 302 ---CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A D++N TGEI +E G I E+I ++ I+ + IL D + I Sbjct: 281 LNLRIANQIAAMDVINPSTGEIMVEKGQKISRLLAEDIQNAGIKSVDILVDDKLVR--VI 338 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESM-FNFLFFDSDKYDLSTVGRVKMN 417 N +DI + + P DVS + E + + L D Y T + ++ Sbjct: 339 SNN------------FVDITKQV-PFDVSDLQIKELVHYPTLREILDNYSDETTIKEEIK 385 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 L+ P +HI K+DI A I + L G G +DDID+LGNRR+RSVGE+L+NQ+R+ Sbjct: 386 KNLSRLIP---KHIIKDDIFATISYELGLPYGIGYVDDIDHLGNRRLRSVGELLQNQFRI 442 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL RMER +KER++ D +S+ PQ LIN +PV +A+ EFF SSQLSQ + N LS +TH Sbjct: 443 GLSRMERVVKERMTIQDQESITPQMLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTH 502 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +FARVN YGF Sbjct: 503 KRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFARVNEYGF 562 Query: 598 IETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 IETPYR V + + T ++ Y +A EE+ IAQA LDE+G F ++ V R + ++ Sbjct: 563 IETPYRIVDKENARATEEIRYFTADEEDQCLIAQAKEPLDENGYFVDKKVTVRYLEDVLV 622 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 VP +D +D S +Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+ Sbjct: 623 VPATDVDLMDVSARQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGI 682 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC 775 E A SG A+ AG+V V A I ++ S G D YRL+KF+RSNQ++C Sbjct: 683 EFKAAVDSGVLPKARNAGVVTFVSANEIRVKRD------SDGGTDNYRLLKFKRSNQSSC 736 Query: 776 VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835 +NQRP+V G+ V +N ++ADGPSTDLG++ALG+N+ + F+ W GYN+ED+MLISE +V Sbjct: 737 INQRPIVNKGEIVFKNQVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVR 796 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 EDVFTS+HIEE+E ARDTKLGPEEITRDIPNVSE+ LK+ID+ GII +GAEV GDILV Sbjct: 797 EDVFTSMHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSGDILV 856 Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 GK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VD+++F R D Sbjct: 857 GKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDIKVFTRENGD 912 Score = 519 bits (1337), Expect = e-144, Method: Composition-based stats. Identities = 264/1141 (23%), Positives = 416/1141 (36%), Gaps = 122/1141 (10%) Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSDCLC---GLYVAEDIVNGETG----------EIY 321 E G + +G + + + V+ G+ + G + V G +I Sbjct: 121 EQGTFIINGAERVIVSQLVRSPGVYYNYSIDKTGKKLYSATVIPNRGAWLEYETDSNDII 180 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 D + + + + +D + R ++ D K R++ LL+IY+ + Sbjct: 181 YVRIDKTRKLPITILARAMGFGSDQELLDFFGEDERFRASIEKDNTKTREEGLLEIYKRL 240 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 RPG+ T A S+ + LFFD+ +YDLS VGR K N +L L+ + + I Sbjct: 241 RPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLALNLRIANQIAAMDVINPSTG 300 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 ++ + K + +++ N ++SV ++ + ++ R I + VDI +P Sbjct: 301 EIMVEKGQKISRLLAEDIQNAGIKSVDILVDD-------KLVRVIS--NNFVDITKQVPF 351 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDV 561 D ++ + V L + I + LS L + + + Sbjct: 352 D-VSDLQIKELVHYPTLREILDNYSDETTIKEEI--KKNLSRLIPKHIIKDDIFATISYE 408 Query: 562 HPTHYGR--ICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSA 619 YG + + + V L + + R V + D ++ Sbjct: 409 LGLPYGIGYVDDIDHLGNRRLRSVGELL---QNQFRIGLSRMERVVKERMTIQDQESITP 465 Query: 620 MEEENRY-IAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASL 678 N +A A ++ + E R ++ Sbjct: 466 QMLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRD 525 Query: 679 IPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK--SSGAAIVAKRAGIVE 736 + + + L A G + A + Sbjct: 526 VHHSHYGRMCPIETPEGPNIGLINSLATFARVNEYGFIETPYRIVDKENARATEEIRYFT 585 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF----------QRSNQNTCVNQRPLVKVGD 786 + + +I + LD + VD +++ + Q V Sbjct: 586 ADEEDQCLIAQAKEPLDENGYFVDKKVTVRYLEDVLVVPATDVDLMDVSARQIVSVATAM 645 Query: 787 EVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV--SEDVFTSIHI 844 + A +L P G E + ++ + + + Sbjct: 646 IPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEFKAAVDSGVLPKARNAGVVTFV 705 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 E+ + G + R + I++ I+ G V +L + Sbjct: 706 SANEIRVKRDSDGGTDNYRLLKFKRSNQSSCINQRPIVNKGEIVFKNQVLADGPSTDLGE 765 Query: 905 PMTPEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISV 959 + + I E A+ + + +R S + + R E Sbjct: 766 IALGKNIRMGFITWEGYNYEDAMLISEELVREDVFTSMHIEEYECEARDTKLGPEEITRD 825 Query: 960 EREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRS 1019 E +D DD I+ R +IL G+ G L + E R Sbjct: 826 IPNVSEDALKDIDDR-GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR- 883 Query: 1020 QWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVA 1079 E K+ + GD++ PGV +V+ ++ Sbjct: 884 ----------------EVRDTSLRVPHGEAGIIVDIKVFTRENGDELNPGVNELVRCYIV 927 Query: 1080 MKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFET 1139 KR I GDKMAGRHGNKG++SRILP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E Sbjct: 928 QKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEV 987 Query: 1140 HLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 HLGWA LG I + + D +I Sbjct: 988 HLGWAASKLGWHISTPVFDGATENEIEECLEKAGYNANGK-------------------- 1027 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 T ++DG TGEPFD VTVG +Y+LKL Sbjct: 1028 --------TVLYDG--------------------------RTGEPFDNLVTVGIMYILKL 1053 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KS Sbjct: 1054 AHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKS 1113 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 DDVVGR + YE+IV G + E G PESF VL+KE+QAL L + + N + + E D Sbjct: 1114 DDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNENHQEVSLKEYTDD 1173 Query: 1380 F 1380 Sbjct: 1174 E 1174 >gi|225026546|ref|ZP_03715738.1| hypothetical protein EUBHAL_00795 [Eubacterium hallii DSM 3353] gi|224956160|gb|EEG37369.1| hypothetical protein EUBHAL_00795 [Eubacterium hallii DSM 3353] Length = 1302 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 434/980 (44%), Positives = 606/980 (61%), Gaps = 66/980 (6%) Query: 9 GLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAF 68 G +R + + +++D+P+LIEVQK SY FL GL+ F+ + PIT + Sbjct: 37 GSKNIRMSYARQKDVLDMPNLIEVQKDSYKWFLTD----------GLKEVFEDISPITDY 86 Query: 69 SGAAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIK 126 SG LEFV ++ + K+ +++C RD TYA PLK+ +RL K D K Sbjct: 87 SGQLSLEFVDFQLCREDRKYSIEECKERDATYAAPLKVKVRLH---------NKETDDFK 137 Query: 127 EQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIP 186 + I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++ + GK LY+C +IP Sbjct: 138 QHDIFMGDLPLMTETGTFVINGAERVIVSQLVRSPGIYYAISHDKI---GKKLYSCTVIP 194 Query: 187 DQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGD 243 ++G W++ E DS D+ +VR+DR RKVPVT + ALG+ + EI F KI+ + D Sbjct: 195 NRGAWLEYETDSNDVFYVRVDRTRKVPVTVLIRALGIGTNAEIKELFGEEPKILKTLEKD 254 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSD 301 + + +D+ E +I S L K + K K L + Sbjct: 255 TATNYQEGLKKLYEKIRPGEPLSVDSAESLINSMFFDARRYDLAKVGRYKFNKKLMF-RN 313 Query: 302 CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNT 361 + G +A+D+++ TGEI EAG + ++ + I ++ +P +YV++ + ++ Sbjct: 314 RIAGHRLAQDVLDPSTGEILFEAGVRLTKEQADAIQNA---AVPYVYVETEEKEVKVLSS 370 Query: 362 LVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLN 421 ++ D + P +V + + L ++YD + ++ + Sbjct: 371 MMVDITSFVD---------VDPEEVGVTELVY--YPALEKILEEYDDIDEIKAQIRKNIT 419 Query: 422 LDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLR 481 P +HI +EDI+A I + L G G DDID+LGNRR+R+VGE+L+NQYR+GL R Sbjct: 420 ELIP---KHITREDILASINYNIHLEYGVGNDDDIDHLGNRRIRAVGELLQNQYRIGLSR 476 Query: 482 MERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRL 541 +ER ++ER+++ DI+S+ PQ LIN KPV +AV EFF SSQLSQ + N LS +TH RRL Sbjct: 477 LERVVRERMTTQDIESISPQTLINIKPVTAAVKEFFGSSQLSQFMDQHNPLSELTHKRRL 536 Query: 542 SALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETP 601 SALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++AR+N YGF+E P Sbjct: 537 SALGPGGLSRDRAGFEVRDVHYSHYGRMCPVETPEGPNIGLINSLATYARINEYGFVEAP 596 Query: 602 YRKVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 YRKV + VT+DVVYL+A EE+N +AQAN LDE+G F V R E Sbjct: 597 YRKVDKSDPQNPVVTDDVVYLTADEEDNYTVAQANEPLDEEGHFIHTNVSGRYREETSEF 656 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + +ID +D SPK V S+A S+IPFLENDD+NR LMG NMQRQAVPLLK E P VGTGME Sbjct: 657 RKSRIDLMDVSPKMVFSVATSMIPFLENDDANRALMGSNMQRQAVPLLKTEVPVVGTGME 716 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 + A+ SG I+A AG VE + I+++ +G D Y ++KF RSNQ C+ Sbjct: 717 AKAARDSGVCIIAHHAGTVEYSTSKEIIVKREDGIRD-------TYHVIKFSRSNQGNCM 769 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP+V GD V DI+ADG ST G++ALG+N L+ FM W GYN+ED++L+SER+V Sbjct: 770 NQRPIVNKGDHVEAGDILADGASTCGGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQN 829 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DV+TS+HIEE+E ARDTKLG EEITRD+ +SE+ LK++DE GII +GAEV+ GDILVG Sbjct: 830 DVYTSVHIEEYEAEARDTKLGQEEITRDLAGLSEDVLKDLDENGIIRIGAEVHAGDILVG 889 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID----- 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G G V+D ++F R D Sbjct: 890 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGAYGVVMDTKVFTRENGDELPPT 949 Query: 952 --KNERSISVEREQIELLAR 969 K+ R ++ +I + + Sbjct: 950 VNKSVRVYIAQKRKISVGDK 969 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 253/1055 (23%), Positives = 401/1055 (38%), Gaps = 67/1055 (6%) Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 + I TL D + ++ L +Y +RPG+ + AES+ N +FFD+ +YDL+ Sbjct: 239 ELFGEEPKILKTLEKDTATNYQEGLKKLYEKIRPGEPLSVDSAESLINSMFFDARRYDLA 298 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKED---IIAIIKILVDLRNGKGTIDDIDNLGNRRVRS 466 VGR K N +L + ++ I +R K D I N V Sbjct: 299 KVGRYKFNKKLMFRNRIAGHRLAQDVLDPSTGEILFEAGVRLTKEQADAIQNAAVPYVYV 358 Query: 467 VGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLE 526 E E+ +K S + V ++ P V E L ++ Sbjct: 359 ETE-------------EKEVKVLSSMM----VDITSFVDVDPEEVGVTELVYYPALEKIL 401 Query: 527 EHVNSLSRITHTRRLSA--LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVS 584 E + + I R + L + R + YG + N + Sbjct: 402 EEYDDIDEIKAQIRKNITELIPKHITREDILASINYNIHLEYGVGNDDDIDHLGN-RRIR 460 Query: 585 SLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 ++ + + R V + T D+ +S N A S + Sbjct: 461 AVGELLQNQYRIGLSRLERVVRERMTTQDIESISPQTLINIKPVTAAVKEFFGSSQLSQF 520 Query: 645 VFCRCAGEEILVPREKIDF------IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 + E+ R D + +V + S + ++ + Sbjct: 521 MDQHNPLSELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPVETPEGPNIGLINS 580 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG 758 A E FV V +V + + + LD Sbjct: 581 LATYARINEYGFVEAPYRKVDKSDPQNPVVTDDVVYLTADEEDNYTVAQANEPLDEEGHF 640 Query: 759 VDIYRLMKFQRS--------NQNTCVNQRPL--VKVGDEVRRNDIIADGPSTDLGDLALG 808 + +++ V+ + + V + A+ Sbjct: 641 IHTNVSGRYREETSEFRKSRIDLMDVSPKMVFSVATSMIPFLENDDANRALMGSNMQRQA 700 Query: 809 RNMLVAFMPWHGYNFEDSMLISERMVSEDVFT-SIHIEEFEVMARDTKLGPEEITRDIPN 867 +L +P G E + ++ + + + G + I Sbjct: 701 VPLLKTEVPVVGTGMEAKAARDSGVCIIAHHAGTVEYSTSKEIIVKREDGIRDTYHVIKF 760 Query: 868 VSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDT 927 +++ I+ G V GDIL + G M + L + + D Sbjct: 761 SRSNQGNCMNQRPIVNKGDHVEAGDILADGASTCG-GEMALGKNPLIGFMTWEGYNYEDA 819 Query: 928 SLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLM 987 L + + V + + + + E LA +D LD N R+ Sbjct: 820 VL-LSERLVQNDVYTSVHIEEYEAEARDTKLGQEEITRDLAGLSEDVLKDLDENGIIRIG 878 Query: 988 EILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKS 1047 + + + G K T L+++ R+ + + A + V Sbjct: 879 AEVHAGDILVGKVTPKGETELTAE--ERLLRAIFGEKAREVRDTSLRVPHG--------- 927 Query: 1048 ILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCE 1107 K+ + GD++PP V + V+V++A KR I GDKMAGRHGNKG+VSR+LP E Sbjct: 928 AYGVVMDTKVFTRENGDELPPTVNKSVRVYIAQKRKISVGDKMAGRHGNKGVVSRVLPVE 987 Query: 1108 DMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISP 1167 DMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG + + + + DI Sbjct: 988 DMPFLPNGRPLDIVLNPLGVPSRMNIGQVLELHLSLASKVLGFNVATPVFNGADENDIMD 1047 Query: 1168 LRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMAD 1227 + D + + W + + Sbjct: 1048 TLEMANDYANKTWEEFEERWGDKVNDDIMKYLWDN--------------RDHREEWKGVP 1093 Query: 1228 LDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKS 1287 +D +G+ L DG TG+ FD PV++G+++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1094 IDRTGKVQLRDGRTGQEFDSPVSIGFMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKA 1153 Query: 1288 NRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESF 1347 GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ G + E G PESF Sbjct: 1154 QFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGENIPEPGIPESF 1213 Query: 1348 NVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 VL+KE Q+L L + + E N+ Sbjct: 1214 KVLLKEFQSLALDVRVLKEDMTEIELQEGSETINE 1248 >gi|158319535|ref|YP_001512042.1| DNA-directed RNA polymerase subunit beta [Alkaliphilus oremlandii OhILAs] gi|182676550|sp|A8MLD2|RPOB_ALKOO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158139734|gb|ABW18046.1| DNA-directed RNA polymerase, beta subunit [Alkaliphilus oremlandii OhILAs] Length = 1241 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 433/965 (44%), Positives = 595/965 (61%), Gaps = 65/965 (6%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M V G R + + E++++P+LI++QK SY FL +EGL+ F Sbjct: 1 MMPHPVQLGKK-TRMSYSQIDEVLEMPNLIDLQKDSYQWFL----------DEGLKEVFD 49 Query: 61 SVFPITAFSGAAMLEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGA 119 V PI ++G +LEFV Y D PK++++D RD+TYA PLK+ +RLI Sbjct: 50 DVSPIEDYTGNLILEFVDYSLDENPKYNIEDSKERDVTYAAPLKVKVRLI---------N 100 Query: 120 KSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLL 179 K+ ++KEQ ++MGD PLMT GTF+I G +R++V+QL RSPG+++ + + GK L Sbjct: 101 KTTGEVKEQEVFMGDFPLMTDTGTFIINGAERVIVNQLVRSPGVYYSREFDKT---GKQL 157 Query: 180 YACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVY 238 ++ +IP++G W++ E DS DI+ VRIDR RK PVT L ALG S+ +I Sbjct: 158 FSATVIPNRGAWLEYETDSNDIVSVRIDRTRKQPVTVLLRALGYGSDAQIKELLGEDERL 217 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLG 297 + + L+ K + GE +E+ K L L K + +G Sbjct: 218 LATLEKDSTKTTDEALLEIYK------KLRPGEPPTVENAKSLLRTLFFDPKRYDLAKVG 271 Query: 298 ITS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYV 349 + + G A +IV+ TGEI +E G ID ++ + S I ++ I Y Sbjct: 272 RYKFNKKLSLANRILGKKAAANIVDPSTGEILVEEGTKIDRETSIMVQDSGINEVFI-YA 330 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 + + N V ++ D + V + + + + D D Sbjct: 331 EDNKVIKVLGNHFVNINKHIP-----FNIEELKISDKVYYPVLKEILDTFSQEEDIRDAL 385 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 +HI DIIA I +L + G IDDID+LGNRR RSVGE Sbjct: 386 K----------ERAKELSPKHIIIADIIASISYEFNLAHDTGNIDDIDHLGNRRSRSVGE 435 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +L+NQ+R+GL RMER +KER++ D+D PQ LIN +PV +A+ EFF SSQLSQ + Sbjct: 436 LLQNQFRIGLSRMERVVKERMTIQDVDLATPQALINIRPVAAAIKEFFGSSQLSQFMDQN 495 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N LS +TH RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+++L+++ Sbjct: 496 NPLSELTHKRRLSALGPGGLSRERAGFEVRDVHNSHYGRMCPIETPEGPNIGLINTLSTY 555 Query: 590 ARVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 ARVN YGFIE+PYRKV + VTN + YL+A EE+ IAQAN LDE+G F + + C Sbjct: 556 ARVNEYGFIESPYRKVDKKRGVVTNVIEYLTADEEDLLVIAQANEPLDEEGRFVNKRIAC 615 Query: 648 RCAGEEILVPR-EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKA 706 R I + ++D++D SPKQVVS+A ++IPFLENDD+NR LMG NMQRQAVPLL Sbjct: 616 RMQFGAIDIAPANEVDYMDVSPKQVVSVATAMIPFLENDDANRALMGANMQRQAVPLLIT 675 Query: 707 EAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMK 766 +AP +GTGME AK SG I+AK G+++++ + IVI+ + D Y+L+K Sbjct: 676 DAPIIGTGMEYQSAKDSGVVILAKHDGVIDRLSSNEIVIKRDK------DGQKDRYKLLK 729 Query: 767 FQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDS 826 F+RSNQ TC+NQRP+V G+ V+ D+IADGPST+ G++ALGRN L+ FM W GYN+ED+ Sbjct: 730 FKRSNQGTCINQRPIVSKGERVKAGDVIADGPSTNQGEIALGRNCLIGFMTWEGYNYEDA 789 Query: 827 MLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGA 886 +LI+E++V ED TSIHIEE+E ARDTKLGPEEITRDIPNV EE LK++DE GII +GA Sbjct: 790 ILINEKLVKEDSLTSIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDLDERGIIRIGA 849 Query: 887 EVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFN 946 EV GDILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G SG +VD+++F+ Sbjct: 850 EVQSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDIKVFS 909 Query: 947 RHGID 951 R D Sbjct: 910 RENGD 914 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 185/540 (34%), Positives = 254/540 (47%), Gaps = 79/540 (14%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E++ + K G ++ + + I++ I+ G V GD++ + + + Sbjct: 711 EIVIKRDKDGQKDRYKLLKFKRSNQGTCINQRPIVSKGERVKAGDVIADGPST-NQGEIA 769 Query: 908 PEEKLLRAIFGEKAVDVRDTSL------RVPSGVSGTVVDVRIFNRHGIDKNERSISVER 961 L + + D L + S S + + R E Sbjct: 770 LGRNCLIGFMTWEGYNYEDAILINEKLVKEDSLTSIHIEEYEAEARDTKLGPEEITRDIP 829 Query: 962 EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E +D DE+ I+ + +IL G+ G L + E R Sbjct: 830 NVGEEALKDL-DERGIIRIGAEVQSGDILVGKVTPKGETELTAEERLLRAIFGEKAR--- 885 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 E + K+ + GD++PPGV +V+ ++A K Sbjct: 886 --------------EVRDTSLKVPHGESGIIVDIKVFSRENGDELPPGVNELVRAYIAQK 931 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R I GDKMAGRHGNKG++SR+LP EDMPFL DGTP++IVLNPLGVPSRMN+GQ+ E HL Sbjct: 932 RKINVGDKMAGRHGNKGVISRVLPAEDMPFLADGTPLEIVLNPLGVPSRMNIGQVLEVHL 991 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 G A LG + + + D DI L +A + Sbjct: 992 GLAAKSLGWNVATPVFDGANEHDIM-------------------------DALEMAGFSR 1026 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 SG + LYDG TGEPFD VTVGY+YMLKL+H Sbjct: 1027 SG-----------------------------KVKLYDGRTGEPFDNDVTVGYMYMLKLHH 1057 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDD Sbjct: 1058 LVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDD 1117 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 VVGR + YE IV G + E G PESF VL+KE+Q+L L + + E + D + Sbjct: 1118 VVGRVKTYECIVKGENIPEPGVPESFKVLIKELQSLCLDVKVLTEEDSEIEIKESVEDDS 1177 >gi|197303964|ref|ZP_03168996.1| hypothetical protein RUMLAC_02701 [Ruminococcus lactaris ATCC 29176] gi|197296932|gb|EDY31500.1| hypothetical protein RUMLAC_02701 [Ruminococcus lactaris ATCC 29176] Length = 1287 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 441/953 (46%), Positives = 589/953 (61%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++++P+LIEVQK SY FL +EGL+ F + PI +SG Sbjct: 13 KSFRMSYSRQEEVLEMPNLIEVQKDSYKWFL----------DEGLKEVFDDISPIADYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +D+C RD TYA PLK+ +RL K +I E Sbjct: 63 HLSLEFVDFTLCEDDVKYTIDECKERDATYAAPLKVRVRLY---------NKENDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMTK GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 114 EIFMGDLPLMTKTGTFVINGAERVIVSQLVRSPGIYYGIAHDKF---GKKLYSATVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG+ + EI+ F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGIGTNAEIIDLFGEEPKILASFTKDTS 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 231 ESYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDPRRYDLAKVGRYKFNKKLNL-KNRV 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED+V+ TGE+ E G I + I +S I + D N + N +V Sbjct: 290 TGQVLAEDVVSAVTGEVVAEKGTKITRELAGMIQNSAAPYIWVEGEDESRNIKVLSNLMV 349 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 ++ D + V E ++ + + V +K ++ +L Sbjct: 350 DLQSVVDI-------------DPAEVGVTEQVYYPVLAGIIEESAGDVDEMKRMIKRDLH 396 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G G DDID+LGNRR+R+VGE+L+NQYR+GL RME Sbjct: 397 -DLIPKHITKEDILASINYNMHLEYGMGNDDDIDHLGNRRIRAVGELLQNQYRIGLSRME 455 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D D + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 456 RVVRERMTTQDQDGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 515 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +AR+N YGFIE PYR Sbjct: 516 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLACYARINEYGFIEAPYR 575 Query: 604 KVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 KV + VT++VVY++A EE+N ++AQAN+ LDE+G F + V R E R Sbjct: 576 KVDKSDPMNPVVTDEVVYMTADEEDNYHVAQANTPLDEEGHFINKNVSGRYREETQDYER 635 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 K D++D SPKQV S+A +LIPFL+NDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 636 NKFDYMDVSPKQVFSVATALIPFLQNDDANRALMGSNMQRQAVPLLTTEAPVVGTGMEVK 695 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG A VA++AG+VE + I IR +G Y+L KFQRSNQ+ C NQ Sbjct: 696 SAVDSGVAEVAEQAGVVESSTSTSITIRHDDGTK-------KTYKLTKFQRSNQSNCYNQ 748 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V G+ V +IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V EDV Sbjct: 749 RPIVDKGERVEAGQVIADGPSTSGGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQEDV 808 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRDIP V ++ LK++DE GII +GAEV GDILVGK+ Sbjct: 809 YTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDLDERGIIRIGAEVRAGDILVGKV 868 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R D Sbjct: 869 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTRENGD 921 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 238/1067 (22%), Positives = 400/1067 (37%), Gaps = 79/1067 (7%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D I + D ++ ++ LL++Y+ +RPG+ AES+ +FFD +YDL Sbjct: 212 IDLFGEEPKILASFTKDTSESYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDPRRYDL 271 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 + VGR K N +LNL + + ++ + A+ G+ + + + Sbjct: 272 AKVGRYKFNKKLNLKNRVTGQVLAEDVVSAVT--------GEVVAEKGTKITRELAGMIQ 323 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 + R+IK + + + V V + + + Sbjct: 324 NSAAPYIWVEGEDESRNIKVLSNLMVDLQSVVDIDPAEVGVTEQVYYPVLAGIIEESAGD 383 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 V+ + R+ R L L + + + YG + N + ++ Sbjct: 384 VDEMKRMI-KRDLHDLIPKHITKEDILASINYNMHLEYGMGNDDDIDHLGN-RRIRAVGE 441 Query: 589 FARVNAYGFIETPYRKVCDGKVTND-----------VVYLSAMEEENRYIAQANSSLDED 637 + + R V + T D + ++A +E +Q + +D++ Sbjct: 442 LLQNQYRIGLSRMERVVRERMTTQDQDGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQN 501 Query: 638 G--------SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNR 689 L + + + + + L N + Sbjct: 502 NPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLACY 561 Query: 690 VLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE 749 + ++A V + + V + Sbjct: 562 ARI------NEYGFIEAPYRKVDKSDPMNPVVTDEVVYMTADEEDNYHVAQANTPLDEEG 615 Query: 750 GDLDPSTSGVDIYRLMKFQRSNQNTC---VNQRPLVKVGDEVRRNDIIADGPSTDLGDLA 806 ++ + SG ++R+ + Q V + A+ Sbjct: 616 HFINKNVSGRYREETQDYERNKFDYMDVSPKQVFSVATALIPFLQNDDANRALMGSNMQR 675 Query: 807 LGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH-IEEFEVMARDTKLGPEEITRDI 865 +L P G E + + + + G ++ + Sbjct: 676 QAVPLLTTEAPVVGTGMEVKSAVDSGVAEVAEQAGVVESSTSTSITIRHDDGTKKTYKLT 735 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 ++ I+ G V G ++ + G M + L + + Sbjct: 736 KFQRSNQSNCYNQRPIVDKGERVEAGQVIADGPSTSG-GEMALGKNPLIGFMTWEGYNYE 794 Query: 926 DTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE------LLARDKDDEQVILD 979 D L V V + + + + E + +D DE+ I+ Sbjct: 795 DAVLLSERLVQEDVYTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDL-DERGIIR 853 Query: 980 RNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLK 1039 R +IL G+ G L + E R E Sbjct: 854 IGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRD 896 Query: 1040 VQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGI 1099 + K+ + GD++ PGV + V++++A KR I GDKMAGRHGNKG+ Sbjct: 897 TSLKVPHGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGV 956 Query: 1100 VSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY 1159 VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG + + + Sbjct: 957 VSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNVSTPVFAG 1016 Query: 1160 KANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAI 1219 DI + + ++ + ++ Sbjct: 1017 ANENDIMDTLDLANDYVNLEWEEFEKKHGEELRPEVLQFLSENRAH-------------- 1062 Query: 1220 NSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVT 1279 + + L G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARSTG YSLVT Sbjct: 1063 RELWKGVPLSRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVT 1122 Query: 1280 QQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTF 1339 QQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ G + Sbjct: 1123 QQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGENIP 1182 Query: 1340 ETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCELK 1386 E G PESF VL+KE+Q+L L + + ME + D+ + +L+ Sbjct: 1183 EPGVPESFKVLLKELQSLALDVRVLRDDNTEVKIMESV-DYGETDLR 1228 >gi|302388106|ref|YP_003823928.1| DNA-directed RNA polymerase, beta subunit [Clostridium saccharolyticum WM1] gi|302198734|gb|ADL06305.1| DNA-directed RNA polymerase, beta subunit [Clostridium saccharolyticum WM1] Length = 1283 Score = 843 bits (2177), Expect = 0.0, Method: Composition-based stats. Identities = 436/953 (45%), Positives = 595/953 (62%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 +R F + E++++P+LIE+QK SY FL +EGL+ F+ + PI F+G Sbjct: 8 KSLRMSFSRQKEVLEMPNLIEIQKNSYQWFL----------DEGLKEVFEDISPIADFAG 57 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV++ D K+ +++C RD TYA PLK+ +RL D D +I E Sbjct: 58 HLSLEFVNFTLCKDDIKYTIEECKERDATYAAPLKVKVRLCNKDKD---------EINEH 108 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT G+FVI G +R++VSQL RSPGI++ + + GK LYAC +IP++ Sbjct: 109 EIFMGDLPLMTDTGSFVINGAERVIVSQLVRSPGIYYGIEHDKV---GKELYACTVIPNR 165 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS DI +VR+DR RKVPVT + ALG + EI+ F K++ S D Sbjct: 166 GAWLEYETDSNDIFYVRVDRTRKVPVTVLIRALGFGTNAEIIELFGEEPKLLASFGKDTS 225 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E ++ S L K + K K L + + Sbjct: 226 DNYQDGLLELYKKIRPGEPLSVDSAESLLNSMFFDPRRYDLAKVGRYKFNKKL-HFKNRI 284 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED+V+ TGEI EAG +D++ +I ++ +P ++++ V + + + L+ Sbjct: 285 TGHVLAEDVVDTTTGEILAEAGTTVDKQLATDIQNA---AVPFVWLEGVEHKQKVLSNLM 341 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D + D + E +F S N Sbjct: 342 VDLSTFV------------SFDPKEAGITELVFYPALEKILAEAGSEDEETLKNALHRNI 389 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L GT DDID+LGNRR+R+VGE+L+NQYR+GL RME Sbjct: 390 NELIPKHITKEDILASINYNMHLEEEVGTADDIDHLGNRRIRAVGELLQNQYRIGLSRME 449 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D+D + PQ LIN KPV +AV EFF SSQLSQ + N L+ +TH RRLSA Sbjct: 450 RVVRERMTTQDMDGITPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLAELTHKRRLSA 509 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL ++ARVN YGF+E PYR Sbjct: 510 LGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLINSLATYARVNQYGFVEAPYR 569 Query: 604 KVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 V + VT++VVYL+A EE+N +AQAN LDEDG F + + R E R Sbjct: 570 VVDKTNAQNPVVTDEVVYLTADEEDNFVVAQANEPLDEDGHFVHKNISGRFREETSEFQR 629 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 + ID +D SPK V S+A ++IPFLENDD+NR LMG NMQRQAVPLL E P VGTGMES Sbjct: 630 KNIDLMDVSPKMVFSVATAMIPFLENDDANRALMGSNMQRQAVPLLTTETPVVGTGMESK 689 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG +VA+ AG+VE+ + I+I+ S G D+YRL KF+RSNQ+ C NQ Sbjct: 690 AAVDSGVCVVARNAGVVERSASNEIIIKRD------SDGGKDVYRLTKFKRSNQSNCYNQ 743 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 +P+V + V + ++IADGPST G++ALG+N L+ FM W GYN+ED++L+SE++V EDV Sbjct: 744 KPIVYKNNHVEKGEVIADGPSTQNGEIALGKNPLIGFMTWEGYNYEDAVLLSEKLVQEDV 803 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRD+P V E+ LK++DE GII +GAEV GDILVGK+ Sbjct: 804 YTSVHIEEYEAEARDTKLGPEEITRDVPGVGEDALKDLDERGIIRIGAEVRAGDILVGKV 863 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G +VD ++F R D Sbjct: 864 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAYGIIVDAKVFTRENGD 916 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 179/595 (30%), Positives = 267/595 (44%), Gaps = 42/595 (7%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLG 857 +L P G E + +V+ + E++ + G Sbjct: 663 MGSNMQRQAVPLLTTETPVVGTGMESKAAVDSGVCVVARNAGVVERSASNEIIIKRDSDG 722 Query: 858 PEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIF 917 +++ R ++ I+ V G+++ + + + + L Sbjct: 723 GKDVYRLTKFKRSNQSNCYNQKPIVYKNNHVEKGEVIADGPSTQN-GEIALGKNPLIGFM 781 Query: 918 GEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI------ELLARDK 971 + + D L V V + + + + E E +D Sbjct: 782 TWEGYNYEDAVLLSEKLVQEDVYTSVHIEEYEAEARDTKLGPEEITRDVPGVGEDALKDL 841 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ R +IL G+ G L + E R Sbjct: 842 -DERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR------------- 887 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E + K+ + GD++ PGV + V++++A KR I GDKMA Sbjct: 888 ----EVRDTSLKVPHGAYGIIVDAKVFTRENGDELSPGVNQTVRIYIAQKRKISVGDKMA 943 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG Sbjct: 944 GRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAARALGFN 1003 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 + + + D DI + Y + V + Sbjct: 1004 VSTPVFDGANEIDIMDTLDVAND-YVNMEWKDFQEKYSETLKPEVIRYLGDHL------- 1055 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 + + ++ G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARS Sbjct: 1056 ------DHKELWKGVPINRDGKVRLRDGRTGEFFDSPVTIGHMHYLKLHHLVDDKIHARS 1109 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE++T+KSDDVVGR + YE+ Sbjct: 1110 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEIMTVKSDDVVGRVKTYEA 1169 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCELK 1386 I+ G++ E G PESF VL+KE+Q+L L + + E DF + +L+ Sbjct: 1170 IIKGDNIPEPGIPESFKVLLKELQSLALDVRVLRDDNTEVQIAEST-DFEETDLR 1223 >gi|188588112|ref|YP_001919665.1| DNA-directed RNA polymerase subunit beta [Clostridium botulinum E3 str. Alaska E43] gi|251780255|ref|ZP_04823175.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226699387|sp|B2UYA3|RPOB_CLOBA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|188498393|gb|ACD51529.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum E3 str. Alaska E43] gi|243084570|gb|EES50460.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1241 Score = 842 bits (2176), Expect = 0.0, Method: Composition-based stats. Identities = 440/956 (46%), Positives = 599/956 (62%), Gaps = 67/956 (7%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R FGK ++ ++P+LIEVQ SY FL EGL F + PIT F+G Sbjct: 9 KRTRMSFGKVKDVTEMPNLIEVQLDSYQWFLR----------EGLHEVFDDINPITNFTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +LEFV Y+ D K+ V++C RD TYA PLK+++RL +IKEQ Sbjct: 59 NLVLEFVDYKLDMDNIKYSVEECKERDATYAAPLKVSVRL---------QNNETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT GTF+I G +R++VSQL RSPG+++++ + GK LY+ +IP++ Sbjct: 110 EVFMGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYNYSIDKT---GKKLYSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ E DS DII+VRID+ RK+P+T A+G S+ E+L F + + Sbjct: 167 GAWLEYETDSNDIIYVRIDKTRKLPITILARAMGFGSDQELLDFFGEDERFRASIEKDNT 226 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD----- 301 L+ K + GE ++S L L K + +G Sbjct: 227 KTREEGLLEIYK------RLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLA 280 Query: 302 ---CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A D++N TGEI +E G I E+I ++ I+ + IL D + I Sbjct: 281 LNLRIANQIAAMDVINPSTGEIMVEKGQKISRLLSEDIQNAGIKSVDILVDDKLVR--VI 338 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESM-FNFLFFDSDKYDLSTVGRVKMN 417 N +DI + + P DVS + E + + L D Y + ++ Sbjct: 339 SNN------------FVDITKQV-PFDVSDLQIKELVHYPTLKEILDNYSDEATIKEEIK 385 Query: 418 MRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRL 477 L+ P +HI K+DI A I + L G G +DDID+LGNRR+RSVGE+L+NQ+R+ Sbjct: 386 KNLSRLIP---KHIIKDDIFATISYELGLPYGIGYVDDIDHLGNRRLRSVGELLQNQFRI 442 Query: 478 GLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH 537 GL RMER +KER++ D +S+ PQ LIN +PV +A+ EFF SSQLSQ + N LS +TH Sbjct: 443 GLSRMERVVKERMTIQDQESITPQMLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTH 502 Query: 538 TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGF 597 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +FARVN YGF Sbjct: 503 KRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFARVNEYGF 562 Query: 598 IETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 IETPYR + + + T ++ Y +A EE+ IAQA LDE+G F ++ V R + ++ Sbjct: 563 IETPYRIIDKENARATEEIRYFTADEEDQCLIAQAKEPLDENGYFVDKKVTVRYLEDVLV 622 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGM 715 VP +D +D S +Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+ Sbjct: 623 VPATDVDLMDVSARQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGI 682 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC 775 E A SG AK AG+V V A I ++ S G D YRL+KF+RSNQ++C Sbjct: 683 EFKAAVDSGVLPKAKNAGVVTFVSANEIRVKRD------SDGGTDNYRLLKFKRSNQSSC 736 Query: 776 VNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVS 835 +NQRP+V G+ V +N ++ADGPSTDLG++ALG+N+ + F+ W GYN+ED+MLISE +V Sbjct: 737 INQRPIVNKGEIVFKNQVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVR 796 Query: 836 EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILV 895 EDVFTS+HIEE+E ARDTKLGPEEITRDIPNVSE+ LK+ID+ GII +GAEV GDILV Sbjct: 797 EDVFTSMHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSGDILV 856 Query: 896 GKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 GK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VD+++F R D Sbjct: 857 GKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDIKVFTRENGD 912 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 268/1151 (23%), Positives = 420/1151 (36%), Gaps = 142/1151 (12%) Query: 275 ESGKKLTSGLLKSLKEKGVKFLGITSDCLC---GLYVAEDIVNGETG----------EIY 321 + G + +G + + + V+ G+ + G + V G +I Sbjct: 121 DQGTFIINGAERVIVSQLVRSPGVYYNYSIDKTGKKLYSATVIPNRGAWLEYETDSNDII 180 Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 D + + + + +D + R ++ D K R++ LL+IY+ + Sbjct: 181 YVRIDKTRKLPITILARAMGFGSDQELLDFFGEDERFRASIEKDNTKTREEGLLEIYKRL 240 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 RPG+ T A S+ + LFFD+ +YDLS VGR K N +L L+ + + I Sbjct: 241 RPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLALNLRIANQIAAMDVINPSTG 300 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 ++ + K + +++ N ++SV ++ + ++ R I + VDI +P Sbjct: 301 EIMVEKGQKISRLLSEDIQNAGIKSVDILVDD-------KLVRVIS--NNFVDITKQVPF 351 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDV 561 D ++ + V L + I + LS L + + + Sbjct: 352 D-VSDLQIKELVHYPTLKEILDNYSDEATIKEEI--KKNLSRLIPKHIIKDDIFATISYE 408 Query: 562 HPTHYGR--ICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSA 619 YG + + + V L + + R V + D ++ Sbjct: 409 LGLPYGIGYVDDIDHLGNRRLRSVGELL---QNQFRIGLSRMERVVKERMTIQDQESITP 465 Query: 620 MEEENRY-IAQAN---------SSLDEDGSFTEELVFCRC---------AGEEILVPREK 660 N +A A S + + EL R + E Sbjct: 466 QMLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRD 525 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLM-GCNMQRQAVPLLKAEAPFVGTGMESVV 719 + + L N + + ++ E + Sbjct: 526 VHHSHYGRMCPIETPEGPNIGLINSLATFARVNEYGFIETPYRIIDKENARATEEIRYFT 585 Query: 720 AKSSGAAIVA---KRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A ++A + ++ +R +E L + VD + Sbjct: 586 ADEEDQCLIAQAKEPLDENGYFVDKKVTVRYLEDVLVVPATDVD----------LMDVSA 635 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 Q V + A +L P G E + ++ + Sbjct: 636 RQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEFKAAVDSGVLPK 695 Query: 837 DVFTSIHIEEF--EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 + E+ + G + R + I++ I+ G V +L Sbjct: 696 AKNAGVVTFVSANEIRVKRDSDGGTDNYRLLKFKRSNQSSCINQRPIVNKGEIVFKNQVL 755 Query: 895 VGKITPKGESPMTPEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 + + + I E A+ + + +R S + + R Sbjct: 756 ADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVREDVFTSMHIEEYECEARDT 815 Query: 950 IDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLS 1009 E E +D DD I+ R +IL G+ G L Sbjct: 816 KLGPEEITRDIPNVSEDALKDIDDR-GIIRIGAEVRSGDILVGKVTPKGETELTAEERLL 874 Query: 1010 SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPG 1069 + E R E K+ + GD++ PG Sbjct: 875 RAIFGEKAR-----------------EVRDTSLRVPHGEAGIIVDIKVFTRENGDELNPG 917 Query: 1070 VLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPS 1129 V +V+ ++ KR I GDKMAGRHGNKG++SRILP EDMPFL DG P+ I LNPLGVPS Sbjct: 918 VNELVRCYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGRPLQICLNPLGVPS 977 Query: 1130 RMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYD 1189 RMN+GQ+ E HLGWA LG I + + D +I Sbjct: 978 RMNIGQVLEVHLGWAASKLGWHISTPVFDGATENEIEACLEKAGYNANGK---------- 1027 Query: 1190 DDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPV 1249 T ++DG TGEPFD PV Sbjct: 1028 ------------------TVLYDG--------------------------RTGEPFDNPV 1043 Query: 1250 TVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAY 1309 TVG +Y+LKL H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ Sbjct: 1044 TVGIMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAH 1103 Query: 1310 VLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTK 1369 LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE+QAL L + + N + Sbjct: 1104 TLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNENHQ 1163 Query: 1370 NSAKMEEIPDF 1380 + E D Sbjct: 1164 EVSLKEYTDDE 1174 >gi|255654155|ref|ZP_05399564.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile QCD-23m63] gi|296449806|ref|ZP_06891574.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile NAP08] gi|296877870|ref|ZP_06901891.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile NAP07] gi|296261350|gb|EFH08177.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile NAP08] gi|296431124|gb|EFH16950.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile NAP07] Length = 1238 Score = 842 bits (2176), Expect = 0.0, Method: Composition-based stats. Identities = 435/955 (45%), Positives = 598/955 (62%), Gaps = 65/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K EI D+P+LIE+Q SY+ FL EGL+ F + PI ++G Sbjct: 9 KRTRMSFSKIKEIADVPNLIEIQVDSYEWFL----------KEGLKEVFDDISPIEDYTG 58 Query: 71 AAMLEFVSYEFD-PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEFV Y D PK+D+++C RD TY PLK+ +RLI K +IKEQ Sbjct: 59 NLILEFVDYSLDDKPKYDIEECKERDATYCAPLKVKVRLI---------NKETGEIKEQE 109 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 ++MGD PLMT+ GTFVI G +R++VSQL RSPG+++ ++ + GK L + +IP++G Sbjct: 110 VFMGDFPLMTERGTFVINGAERVIVSQLVRSPGVYYAEERDKT---GKRLISSTVIPNRG 166 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ E DS D+I VR+DR RK PVT L ALG+ ++ EI+ S + Sbjct: 167 AWLEYETDSNDVISVRVDRTRKQPVTVLLRALGIGTDAEIIDLLGEDERLSATLEKDNTK 226 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD------ 301 L+ K + GE +ES L + L K + +G Sbjct: 227 TVEEGLVEIYK------KLRPGEPPTVESASSLLNALFFDPKRYDLAKVGRYKFNKKLAL 280 Query: 302 --CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + AEDI+N ETGE++++AG+ I + I ++ I + +L D Sbjct: 281 CYRIMNKISAEDIINPETGEVFVKAGEKISYDLAKAIQNAGINVVNLLMDDDKKVRVIGN 340 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 N + + D L+I + + L D Y + + R Sbjct: 341 NFVDIKSHIDFDIDDLNIKEKVH-------------YPTLKEILDGYSDEEEIKEAIKSR 387 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 + P +HI +DIIA I ++ G IDDID+LGNRR+RSVGE+L+NQ R+GL Sbjct: 388 IKELIP---KHILLDDIIASISYEFNIFYNIGNIDDIDHLGNRRIRSVGELLQNQVRIGL 444 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RMER IKER++ D++++ PQ L+N +PV +A+ EFF SSQLSQ + N LS +TH R Sbjct: 445 SRMERVIKERMTVQDMEAITPQALVNIRPVSAAIKEFFGSSQLSQFMDQTNPLSELTHKR 504 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A++N +GFIE Sbjct: 505 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLGTYAKINEFGFIE 564 Query: 600 TPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILV 656 +PYRK VT+++ YL+A EE+ AQAN L EDG F V CR G +V Sbjct: 565 SPYRKFDKETSTVTDEIHYLTADEEDLFVRAQANEPLTEDGKFVNHRVVCRTVNGAVEMV 624 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P ++D++D SPKQVVS+A ++IPFLENDD+NR LMG NMQRQAVPL++ EAP +GTG+E Sbjct: 625 PESRVDYMDISPKQVVSVATAMIPFLENDDANRALMGANMQRQAVPLVRREAPIIGTGIE 684 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 AK SGA +VA+ +GI E+V A I+I+ +G+ D Y L+KF+RSN TC+ Sbjct: 685 YRAAKDSGAVVVARNSGIAERVTADEIIIKREDGNRD-------RYNLLKFKRSNSGTCI 737 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQ P++ GD++ + D+IADGP+TDLG++ALGRN L+AFM W GYN+ED++LI+ER+V E Sbjct: 738 NQTPIINKGDQIMKGDVIADGPATDLGEVALGRNCLIAFMTWEGYNYEDAILINERLVKE 797 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D ++IHIEE+E ARDTKLGPEEITRDIPNV + +KN+D+ GII +GAEV+ GDILVG Sbjct: 798 DRLSTIHIEEYECEARDTKLGPEEITRDIPNVGDSAIKNLDDRGIIRIGAEVDSGDILVG 857 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G SG +VDV++F R D Sbjct: 858 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTRENGD 912 Score = 466 bits (1199), Expect = e-128, Method: Composition-based stats. Identities = 158/441 (35%), Positives = 220/441 (49%), Gaps = 70/441 (15%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEILCGQNAVSGPKG 1001 K +R ++ E+ E ARD + R+I I G SG Sbjct: 796 KEDRLSTIHIEEYECEARDTKLGPEEITRDIPNVGDSAIKNLDDRGIIRIGAEVDSGDIL 855 Query: 1002 FKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQ 1061 K T ++ R F + +V+ + + K+ + Sbjct: 856 VGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDV------KVFTRE 909 Query: 1062 WGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIV 1121 GDD+ PGV +V+ ++A KR I+ GDKMAGRHGNKG++SR+LP EDMPF+++GTP+DI+ Sbjct: 910 NGDDLSPGVNELVRCYIAKKRKIKVGDKMAGRHGNKGVISRVLPEEDMPFMENGTPLDII 969 Query: 1122 LNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSH 1181 LNP G+PSRMN+GQ+ E HLG A LG + + + D DI Sbjct: 970 LNPQGIPSRMNIGQVLEVHLGLAAKTLGWYVATSVFDGANEYDIMDALEEAGYPRDGKLT 1029 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLT 1241 G++ Sbjct: 1030 L-----------------------------------------------YDGRT------- 1035 Query: 1242 GEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWC 1301 GE FD +TVGY+Y LKL+H+V +K++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1036 GESFDNRITVGYMYYLKLHHLVDEKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA 1095 Query: 1302 IQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361 ++AYGAA++LQE+LT+KSDDVVGR R YE+IV G + E G PESF VL+KE+Q+L L + Sbjct: 1096 LEAYGAAHILQEILTVKSDDVVGRVRTYEAIVKGENIPEPGIPESFKVLIKELQSLCLDV 1155 Query: 1362 DLENSRTKNSAKMEEIPDFNK 1382 + + E + + + Sbjct: 1156 KVLTDEDQEIEVRESVDEDDT 1176 >gi|167758507|ref|ZP_02430634.1| hypothetical protein CLOSCI_00847 [Clostridium scindens ATCC 35704] gi|167663703|gb|EDS07833.1| hypothetical protein CLOSCI_00847 [Clostridium scindens ATCC 35704] Length = 1291 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 428/953 (44%), Positives = 586/953 (61%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++ +P+LIEVQK SY FL +EGL+ F + PI +SG Sbjct: 13 KSSRMSYSRQKEVLQMPNLIEVQKDSYQWFL----------DEGLKEVFDDISPIADYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL K +I E Sbjct: 63 HLSLEFVDFTLCEDDVKYTIEECKERDATYAAPLKVRVRLH---------NKETDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 114 EIFMGDLPLMTSTGTFVINGAERVIVSQLVRSPGIYYAIAHDKV---GKKLYSSTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + A+G + EI+ F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRAMGFGTNPEIVELFGEEPKIIASFEKDAA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 231 TNYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDPRRYDLAKVGRYKFNKKLAL-KNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +A+D+ + TGE+ EAG + + ++I ++ + + I D N + N +V Sbjct: 290 TGQILAQDVASPLTGEVIAEAGTKVTRELADQIQNAAVPYVWIEREDEERNIKVLSNMMV 349 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 + + D V E ++ + + + +K ++ ++ Sbjct: 350 DITS-------------IVDVDPKEVGVTELVYYPVLAGILEETAGDIDELKDAIKRDIH 396 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G G DDID+LGNRR+RSVGE+L+NQYR+GL R+E Sbjct: 397 -DLIPKHITKEDILASINYNIHLEYGLGNDDDIDHLGNRRIRSVGELLQNQYRIGLSRLE 455 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D++ + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 456 RVVRERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 515 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++AR+N YGFIE PYR Sbjct: 516 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLATYARINQYGFIEAPYR 575 Query: 604 KVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 K+ + VT +VVY++A EE+N ++AQAN LD +G F + V R E R Sbjct: 576 KINHDDPANPVVTEEVVYMTADEEDNYHVAQANEPLDAEGHFIHKNVSGRYRDETQEYER 635 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 D++D SPK V S+A +LIPFLENDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 636 RMFDYMDVSPKMVFSVATALIPFLENDDANRALMGSNMQRQAVPLLMTEAPVVGTGMEEK 695 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG ++A+ G+VE+ + I IR +G + Y+L+KF RSNQ+ C NQ Sbjct: 696 SAVDSGVCVIAETGGVVERSTSTEITIRQDDG-------NLKRYKLIKFLRSNQSNCYNQ 748 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V GD V D+IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V EDV Sbjct: 749 RPIVFKGDRVEAGDVIADGPSTSNGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQEDV 808 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRDIP V ++ LKN+DE GII +GAEV GDILVGK+ Sbjct: 809 YTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKNLDERGIIRIGAEVRAGDILVGKV 868 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R D Sbjct: 869 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTRDNGD 921 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 245/1100 (22%), Positives = 409/1100 (37%), Gaps = 79/1100 (7%) Query: 316 ETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALL 375 ++ +++ D + + + + V+ I + D + ++ LL Sbjct: 179 DSNDVFYVRVDRTRKVPITVLIRAMGFGTNPEIVELFGEEPKIIASFEKDAATNYQEGLL 238 Query: 376 DIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKED 435 ++Y+ +RPG+ AES+ +FFD +YDL+ VGR K N +L L + + ++ Sbjct: 239 ELYKKIRPGEPLAVDSAESLITSMFFDPRRYDLAKVGRYKFNKKLALKNRITGQILAQDV 298 Query: 436 IIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDI 495 + G+ + + + + ER+IK + + Sbjct: 299 ASPLT--------GEVIAEAGTKVTRELADQIQNAAVPYVWIEREDEERNIKVLSNMMVD 350 Query: 496 DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAG 555 + + V V + L + ++ L R + L + + Sbjct: 351 ITSIVDVDPKEVGVTELVYYPVLAGILEETAGDIDELKDAI-KRDIHDLIPKHITKEDIL 409 Query: 556 VEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVV 615 + YG + N + S+ + + R V + T D+ Sbjct: 410 ASINYNIHLEYGLGNDDDIDHLGN-RRIRSVGELLQNQYRIGLSRLERVVRERMTTQDLE 468 Query: 616 YLSAMEEENRYIAQANSS----------LDEDGSFTEELVFCRC---------AGEEILV 656 +S N A + + EL R + + Sbjct: 469 GISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSALGPGGLSRDRAGF 528 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM-GCNMQRQAVPLLKAEAPFVGTGM 715 + + + L N + + + + P Sbjct: 529 EVRDVHYSHYGRMCPIETPEGPNIGLINSLATYARINQYGFIEAPYRKINHDDPANPVVT 588 Query: 716 ESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC 775 E + V + + + + SG +++R + Sbjct: 589 EE-------VVYMTADEEDNYHVAQANEPLDAEGHFIHKNVSGRYRDETQEYERRMFDYM 641 Query: 776 -VNQRPL--VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 V+ + + V + A+ +L+ P G E+ + Sbjct: 642 DVSPKMVFSVATALIPFLENDDANRALMGSNMQRQAVPLLMTEAPVVGTGMEEKSAVDSG 701 Query: 833 -MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 V + + + G + + I + ++ I+ G V G Sbjct: 702 VCVIAETGGVVERSTSTEITIRQDDGNLKRYKLIKFLRSNQSNCYNQRPIVFKGDRVEAG 761 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 D++ + M + L + + D L V V + + Sbjct: 762 DVIADGPSTSN-GEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQEDVYTSVHIEEYEAE 820 Query: 952 KNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKST 1006 + + E I + D DE+ I+ R +IL G+ G Sbjct: 821 ARDTKLGPEEITRDIPGVGDDALKNLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEE 880 Query: 1007 VLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDM 1066 L + E R E + K+ GD++ Sbjct: 881 RLLRAIFGEKAR-----------------EVRDTSLKVPHGEYGIVVDAKVFTRDNGDEL 923 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 PGV + V++++A KR I GDKMAGRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLG Sbjct: 924 SPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLG 983 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E HL A LG I + + D DI S E + Sbjct: 984 VPSRMNIGQVLEIHLSLAAKALGFNIATPVFDGADENDIMDTLDLAND-YVNLSWEEFEA 1042 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + ++ + V + + + + G+ L DG TGE FD Sbjct: 1043 KHKEELLPEVLQYLSD-------------NREHRKLWKGVPISRDGKVRLRDGRTGEYFD 1089 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 PVT+G+++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1090 SPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1149 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 A+Y LQE+LT+KSDDV+GR + YE+I+ G + E G PESF VL+KE+Q+LGL + + Sbjct: 1150 ASYTLQEILTVKSDDVIGRVKTYEAIIKGENIPEPGIPESFKVLLKELQSLGLDVRVLRD 1209 Query: 1367 RTKNSAKMEEIPDFNKCELK 1386 ME + D + + + Sbjct: 1210 DNTEVEIMETV-DMGETDFR 1228 >gi|254973724|ref|ZP_05270196.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile QCD-66c26] gi|255091114|ref|ZP_05320592.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile CIP 107932] gi|255312768|ref|ZP_05354351.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile QCD-76w55] gi|255515528|ref|ZP_05383204.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile QCD-97b34] gi|255648622|ref|ZP_05395524.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile QCD-37x79] gi|260681839|ref|YP_003213124.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile CD196] gi|260685437|ref|YP_003216570.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile R20291] gi|306518745|ref|ZP_07405092.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile QCD-32g58] gi|260208002|emb|CBA60173.1| DNA-directed RNA polymerase beta chain [Clostridium difficile CD196] gi|260211453|emb|CBE01567.1| DNA-directed RNA polymerase beta chain [Clostridium difficile R20291] Length = 1238 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 435/955 (45%), Positives = 598/955 (62%), Gaps = 65/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K EI D+P+LIE+Q SY+ FL EGL+ F + PI ++G Sbjct: 9 KRTRMSFSKIKEIADVPNLIEIQVDSYEWFL----------KEGLKEVFDDISPIEDYTG 58 Query: 71 AAMLEFVSYEFD-PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEFV Y D PK+D+++C RD TY PLK+ +RLI K +IKEQ Sbjct: 59 NLILEFVDYSLDDKPKYDIEECKERDATYCAPLKVKVRLI---------NKETGEIKEQE 109 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 ++MGD PLMT+ GTFVI G +R++VSQL RSPG+++ ++ + GK L + +IP++G Sbjct: 110 VFMGDFPLMTERGTFVINGAERVIVSQLVRSPGVYYAEERDKT---GKRLISSTVIPNRG 166 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ E DS D+I VR+DR RK PVT L ALG+ ++ EI+ S + Sbjct: 167 AWLEYETDSNDVISVRVDRTRKQPVTVLLRALGIGTDAEIIDLLGEDERLSATLEKDNTK 226 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD------ 301 L+ K + GE +ES L + L K + +G Sbjct: 227 TVEEGLVEIYK------KLRPGEPPTVESASSLLNALFFDPKRYDLAKVGRYKFNKKLAL 280 Query: 302 --CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + AEDI+N ETGE++++AG+ I + I ++ I + +L D Sbjct: 281 CYRIMNKISAEDIINPETGEVFVKAGEKISYDLAKAIQNAGINVVNLLMDDDKKVRVIGN 340 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 N + + D L+I + + L D Y + + R Sbjct: 341 NFVDIKSHIDFDIDDLNIKEKVH-------------YPTLKEILDGYSDEEEIKEAIKSR 387 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 + P +HI +DIIA I ++ G IDDID+LGNRR+RSVGE+L+NQ R+GL Sbjct: 388 IKELIP---KHILLDDIIASISYEFNIFYNIGNIDDIDHLGNRRIRSVGELLQNQVRIGL 444 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RMER IKER++ D++++ PQ L+N +PV +A+ EFF SSQLSQ + N LS +TH R Sbjct: 445 SRMERVIKERMTVQDMEAITPQALVNIRPVSAAIKEFFGSSQLSQFMDQTNPLSELTHKR 504 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A++N +GFIE Sbjct: 505 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLGTYAKINEFGFIE 564 Query: 600 TPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILV 656 +PYRK VT+++ YL+A EE+ AQAN L EDG F V CR G +V Sbjct: 565 SPYRKFDKETSTVTDEIHYLTADEEDLFVRAQANEPLTEDGKFVNHRVVCRTVNGAVEMV 624 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P ++D++D SPKQVVS+A ++IPFLENDD+NR LMG NMQRQAVPL++ EAP +GTG+E Sbjct: 625 PESRVDYMDISPKQVVSVATAMIPFLENDDANRALMGANMQRQAVPLVRREAPIIGTGIE 684 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 AK SGA +VA+ +GI E+V A I+I+ +G+ D Y L+KF+RSN TC+ Sbjct: 685 YRAAKDSGAVVVARNSGIAERVTADEIIIKREDGNRD-------RYNLLKFKRSNSGTCI 737 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQ P++ GD++ + D+IADGP+TDLG++ALGRN L+AFM W GYN+ED++LI+ER+V E Sbjct: 738 NQTPIINKGDQIIKGDVIADGPATDLGEVALGRNCLIAFMTWEGYNYEDAILINERLVKE 797 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D ++IHIEE+E ARDTKLGPEEITRDIPNV + +KN+D+ GII +GAEV+ GDILVG Sbjct: 798 DRLSTIHIEEYECEARDTKLGPEEITRDIPNVGDSAIKNLDDRGIIRIGAEVDSGDILVG 857 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G SG +VDV++F R D Sbjct: 858 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTRENGD 912 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 157/441 (35%), Positives = 220/441 (49%), Gaps = 70/441 (15%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEILCGQNAVSGPKG 1001 K +R ++ E+ E ARD + R+I I G SG Sbjct: 796 KEDRLSTIHIEEYECEARDTKLGPEEITRDIPNVGDSAIKNLDDRGIIRIGAEVDSGDIL 855 Query: 1002 FKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQ 1061 K T ++ R F + +V+ + + K+ + Sbjct: 856 VGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDV------KVFTRE 909 Query: 1062 WGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIV 1121 GDD+ PGV +V+ ++A KR I+ GDKMAGRHGNKG++SR+LP EDMPF+++GTP+DI+ Sbjct: 910 NGDDLSPGVNELVRCYIAKKRKIKVGDKMAGRHGNKGVISRVLPEEDMPFMENGTPLDII 969 Query: 1122 LNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSH 1181 LNP G+PSRMN+GQ+ E HLG A LG + + + D DI Sbjct: 970 LNPQGIPSRMNIGQVLEVHLGLAAKTLGWYVATSVFDGANEYDIMDALEEAGYPRDGKLT 1029 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLT 1241 G++ Sbjct: 1030 L-----------------------------------------------YDGRT------- 1035 Query: 1242 GEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWC 1301 G+ FD +TVGY+Y LKL+H+V +K++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1036 GQSFDNRITVGYMYYLKLHHLVDEKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA 1095 Query: 1302 IQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361 ++AYGAA++LQE+LT+KSDDVVGR R YE+IV G + E G PESF VL+KE+Q+L L + Sbjct: 1096 LEAYGAAHILQEILTVKSDDVVGRVRTYEAIVKGENIPEPGIPESFKVLIKELQSLCLDV 1155 Query: 1362 DLENSRTKNSAKMEEIPDFNK 1382 + + E + + + Sbjct: 1156 KVLTDEDQEIEVRESVDEDDT 1176 >gi|126697633|ref|YP_001086530.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile 630] gi|255099226|ref|ZP_05328203.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile QCD-63q42] gi|255305008|ref|ZP_05349180.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile ATCC 43255] gi|123363690|sp|Q18CF1|RPOB_CLOD6 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|115249070|emb|CAJ66881.1| DNA-directed RNA polymerase subunit beta [Clostridium difficile] Length = 1238 Score = 842 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 435/955 (45%), Positives = 598/955 (62%), Gaps = 65/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K EI D+P+LIE+Q SY+ FL EGL+ F + PI ++G Sbjct: 9 KRTRMSFSKIKEIADVPNLIEIQVDSYEWFL----------KEGLKEVFDDISPIEDYTG 58 Query: 71 AAMLEFVSYEFD-PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEFV Y D PK+D+++C RD TY PLK+ +RLI K +IKEQ Sbjct: 59 NLILEFVDYSLDDKPKYDIEECKERDATYCAPLKVKVRLI---------NKETGEIKEQE 109 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 ++MGD PLMT+ GTFVI G +R++VSQL RSPG+++ ++ + GK L + +IP++G Sbjct: 110 VFMGDFPLMTERGTFVINGAERVIVSQLVRSPGVYYAEERDKT---GKRLISSTVIPNRG 166 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ E DS D+I VR+DR RK PVT L ALG+ ++ EI+ S + Sbjct: 167 AWLEYETDSNDVISVRVDRTRKQPVTVLLRALGIGTDAEIIDLLGEDERLSATLEKDNTK 226 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD------ 301 L+ K + GE +ES L + L K + +G Sbjct: 227 TVEEGLVEIYK------KLRPGEPPTVESASSLLNALFFDPKRYDLAKVGRYKFNKKLAL 280 Query: 302 --CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + AEDI+N ETGE++++AG+ I + I ++ I + +L D Sbjct: 281 CYRIMNKISAEDIINPETGEVFVKAGEKISYDLAKAIQNAGINVVNLLMDDDKKVRVIGN 340 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 N + + D L+I + + L D Y + + R Sbjct: 341 NFVDIKSHIDFDIDDLNIKEKVH-------------YPTLKEILDGYSDEEEIKEAIKSR 387 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 + P +HI +DIIA I ++ G IDDID+LGNRR+RSVGE+L+NQ R+GL Sbjct: 388 IKELIP---KHILLDDIIASISYEFNIFYNIGNIDDIDHLGNRRIRSVGELLQNQVRIGL 444 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RMER IKER++ D++++ PQ L+N +PV +A+ EFF SSQLSQ + N LS +TH R Sbjct: 445 SRMERVIKERMTVQDMEAITPQALVNIRPVSAAIKEFFGSSQLSQFMDQTNPLSELTHKR 504 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A++N +GFIE Sbjct: 505 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLGTYAKINEFGFIE 564 Query: 600 TPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILV 656 +PYRK VT+++ YL+A EE+ AQAN L EDG F V CR G +V Sbjct: 565 SPYRKFDKETSTVTDEIHYLTADEEDLFVRAQANEPLTEDGKFVNHRVVCRTVNGAVEMV 624 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P ++D++D SPKQVVS+A ++IPFLENDD+NR LMG NMQRQAVPL++ EAP +GTG+E Sbjct: 625 PESRVDYMDISPKQVVSVATAMIPFLENDDANRALMGANMQRQAVPLVRREAPIIGTGIE 684 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 AK SGA +VA+ +GI E+V A I+I+ +G+ D Y L+KF+RSN TC+ Sbjct: 685 YRAAKDSGAVVVARNSGIAERVTADEIIIKREDGNRD-------RYNLLKFKRSNSGTCI 737 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQ P++ GD++ + D+IADGP+TDLG++ALGRN L+AFM W GYN+ED++LI+ER+V E Sbjct: 738 NQTPIINKGDQIIKGDVIADGPATDLGEVALGRNCLIAFMTWEGYNYEDAILINERLVKE 797 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D ++IHIEE+E ARDTKLGPEEITRDIPNV + +KN+D+ GII +GAEV+ GDILVG Sbjct: 798 DRLSTIHIEEYECEARDTKLGPEEITRDIPNVGDSAIKNLDDRGIIRIGAEVDSGDILVG 857 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G SG +VDV++F R D Sbjct: 858 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTRENGD 912 Score = 466 bits (1199), Expect = e-128, Method: Composition-based stats. Identities = 158/441 (35%), Positives = 220/441 (49%), Gaps = 70/441 (15%) Query: 952 KNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEILCGQNAVSGPKG 1001 K +R ++ E+ E ARD + R+I I G SG Sbjct: 796 KEDRLSTIHIEEYECEARDTKLGPEEITRDIPNVGDSAIKNLDDRGIIRIGAEVDSGDIL 855 Query: 1002 FKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQ 1061 K T ++ R F + +V+ + + K+ + Sbjct: 856 VGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDV------KVFTRE 909 Query: 1062 WGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIV 1121 GDD+ PGV +V+ ++A KR I+ GDKMAGRHGNKG++SR+LP EDMPF+++GTP+DI+ Sbjct: 910 NGDDLSPGVNELVRCYIAKKRKIKVGDKMAGRHGNKGVISRVLPEEDMPFMENGTPLDII 969 Query: 1122 LNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSH 1181 LNP G+PSRMN+GQ+ E HLG A LG + + + D DI Sbjct: 970 LNPQGIPSRMNIGQVLEVHLGLAAKTLGWYVATSVFDGANEYDIMDALEEAGYPRDGKLT 1029 Query: 1182 TEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLT 1241 G++ Sbjct: 1030 L-----------------------------------------------YDGRT------- 1035 Query: 1242 GEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWC 1301 GE FD +TVGY+Y LKL+H+V +K++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1036 GESFDNRITVGYMYYLKLHHLVDEKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA 1095 Query: 1302 IQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361 ++AYGAA++LQE+LT+KSDDVVGR R YE+IV G + E G PESF VL+KE+Q+L L + Sbjct: 1096 LEAYGAAHILQEILTVKSDDVVGRVRTYEAIVKGENIPEPGIPESFKVLIKELQSLCLDV 1155 Query: 1362 DLENSRTKNSAKMEEIPDFNK 1382 + + E + + + Sbjct: 1156 KVLTDEDQEIEVRESVDEDDT 1176 >gi|24380333|ref|NP_722288.1| DNA-directed RNA polymerase subunit beta [Streptococcus mutans UA159] gi|290579694|ref|YP_003484086.1| DNA-dependent RNA polymerase subunit beta [Streptococcus mutans NN2025] gi|41018032|sp|Q8DS46|RPOB_STRMU RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|24378350|gb|AAN59594.1|AE015022_1 DNA-dependent RNA polymerase, beta subunit [Streptococcus mutans UA159] gi|254996593|dbj|BAH87194.1| DNA-dependent RNA polymerase beta subunit [Streptococcus mutans NN2025] Length = 1187 Score = 842 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DTGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYELKEPKYTLEEARAHDAHYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPLMTEMGTFIINGAERIIVSQLVRSPGVYFN---DKVDKNGKIGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIIDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPNDSRTDEALKEIYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG + ++ I D+ Sbjct: 278 YKINKKLNVKTRLLNQVIAENLVDPETGEILVEAGTEMTRSVIDSIADYLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N + +L ++VM P D Sbjct: 332 --NKIVYTPNEYAVL----TEPVVLQKFKVMAPNDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N D VRH+ DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 362 --DRTVTVIGNASPDDKVRHLTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV KVTN++ +L+A EE+ +AQANS L+EDGSF EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRETGKVTNEIEWLTADEEDEFTVAQANSKLNEDGSFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P ++++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPASSVEYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTGME A SGAAI+A+ G V DA +I +R +G LD +Y + KF+ Sbjct: 660 PFVGTGMEYQAAHDSGAAIIAQHNGKVVYSDADKIEVRREDGSLD-------VYHVTKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LV+VGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVRVGDSVEKGDFIADGPSMEKGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EEFE RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVCDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 239/1069 (22%), Positives = 397/1069 (37%), Gaps = 122/1069 (11%) Query: 332 SLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFS 390 + + S +I ++ D + N ++ + +AL +IY +RPG+ T Sbjct: 195 LVRALGFSGDDEIIDIFGDSELVRNTIEKDIHKNPNDSRTDEALKEIYERLRPGEPKTAD 254 Query: 391 VAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGK 450 + S+ FFD+ +YDL+ VGR K+N +LN + I + LVD G+ Sbjct: 255 SSRSLLIARFFDARRYDLAAVGRYKINKKLN--------VKTRLLNQVIAENLVDPETGE 306 Query: 451 GTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVV 510 ++ + + S+ + L + + + + + + ++ V+ Sbjct: 307 ILVEAGTEMTRSVIDSIADYLDG-------DLNKIVY---TPNEYAVLTEPVVLQKFKVM 356 Query: 511 SAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRIC 570 + + + + + ++ H L + A + H G Sbjct: 357 APND----PDRTVTVIGNASPDDKVRHLTPADILAEMSYFLNLAEGLGKVDDIDHLGNRR 412 Query: 571 PAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQA 630 E L R N + +V + ++ ++A +E +Q Sbjct: 413 IRAVGELLANQFRIGLARMER-NVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQL 471 Query: 631 NSSLDEDG--------SFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPF 681 + +D+ L + + + + I Sbjct: 472 SQFMDQHNPLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGL 531 Query: 682 LENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA--KSSGAAIVAKRAGIVEQVD 739 + N S L + + E V +E + A + A + Sbjct: 532 INNLSSYGHLNKYGFIQTPYRKVDRETGKVTNEIEWLTADEEDEFTVAQANSKLNEDGSF 591 Query: 740 AIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPS 799 A IV+ +G+ + Y + Q V + ++ Sbjct: 592 AEEIVMGRHQGNNQEFPASSVEY---------MDVSPKQVVAVATACIPFLENDDSNRAL 642 Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTSIHIEEFEVMARDTKLGP 858 ++ P+ G E S + + + + + + G Sbjct: 643 MGANMQRQAVPLIDPKAPFVGTGMEYQAAHDSGAAIIAQHNGKVVYSDADKIEVRREDGS 702 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 ++ ++ ++ VG V GD + + + M + + A Sbjct: 703 LDVYHVTKFRRSNSGTAYNQRTLVRVGDSVEKGDFIADGPS-MEKGEMALGQNPVVAYMT 761 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD---D 973 + + D + V V + + + E +I + D D Sbjct: 762 WEGYNFEDAVIMSERLVKDDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDALKDLD 821 Query: 974 EQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQR 1033 E I+ + +IL G+ G K L + + R +V+ Sbjct: 822 EMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSR-----------EVRD 870 Query: 1034 NVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGR 1093 + + + KI GD++ GV +V+V++A KR I+ GDKMAGR Sbjct: 871 TSLRVPHGGDGVVCDV------KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGR 924 Query: 1094 HGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIK 1153 HGNKG+VSRI+P EDMP+L DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I Sbjct: 925 HGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIA 984 Query: 1154 SLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDG 1213 + + D + D+ T ++DG Sbjct: 985 TPVFDGATSDDLWETVKEAGMDSDAK----------------------------TVLYDG 1016 Query: 1214 ADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTG 1273 TGEPFD V+VG +YM+KL+HMV DK++ARS G Sbjct: 1017 --------------------------RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVG 1050 Query: 1274 SYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIV 1333 YS +TQQPLGGK+ GGQR GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I Sbjct: 1051 PYSTITQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAIT 1110 Query: 1334 AGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 G + G PESF VLVKE+Q+LGL + + + K + + Sbjct: 1111 KGKPIPKPGVPESFRVLVKELQSLGLDMRVLDKDDKEVDLRDLDEGEDD 1159 >gi|331007093|ref|ZP_08330316.1| DNA-directed RNA polymerase beta subunit [gamma proteobacterium IMCC1989] gi|330419088|gb|EGG93531.1| DNA-directed RNA polymerase beta subunit [gamma proteobacterium IMCC1989] Length = 643 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 356/640 (55%), Positives = 484/640 (75%), Gaps = 1/640 (0%) Query: 725 AAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKV 784 VAKR G++E+VDA RIV+R+ + + + +GVDIY L K+ RSNQNTC+NQ+P+V V Sbjct: 1 MCGVAKRGGVIERVDAARIVVRASDSETEAGDAGVDIYNLTKYTRSNQNTCINQKPIVHV 60 Query: 785 GDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHI 844 GD + R DI+ADGPS D+G+LALG+NM +AFMPW+GYNFEDS+L+SER+V ED FT+IHI Sbjct: 61 GDTIVRGDILADGPSVDMGELALGQNMRIAFMPWNGYNFEDSILVSERVVKEDRFTTIHI 120 Query: 845 EEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGES 904 +E +ARDTKLG EEIT DIPNV E L +DE GI+ +GAEV PGDILVGK+TPKGE+ Sbjct: 121 QELTCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVGPGDILVGKVTPKGET 180 Query: 905 PMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI 964 +TPEEKLLRAIFGEKA DV+DTS RVP+ GTV+DV++F R G++K+ RS ++E Q+ Sbjct: 181 QLTPEEKLLRAIFGEKASDVKDTSSRVPTSTKGTVIDVQVFTRDGLEKDPRSKAIEEMQL 240 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQF 1024 E + +D ++E I++ + RL +L GQ +G K KK T L+++++++ + Q + Sbjct: 241 EKVRKDLNEEFRIVEAATFERLYSVLVGQKTSAG-KAVKKGTELTAEILADLDKDQLFNL 299 Query: 1025 AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPI 1084 V D+ + ++ + Q + ++IL++RF++K K+Q GDD+ PGVL++VKV++A+KR I Sbjct: 300 RVSDDAINEQIDRAEEQLKERRAILDERFEDKKRKLQTGDDLAPGVLKIVKVYLAIKRRI 359 Query: 1085 QSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWA 1144 Q GDKMAGRHGNKG++S I+P EDMP+ + G P+DIVLNPLGVPSRMNVGQ+ E HLG A Sbjct: 360 QPGDKMAGRHGNKGVISVIMPIEDMPYDEHGEPIDIVLNPLGVPSRMNVGQVLEMHLGLA 419 Query: 1145 CVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGV 1204 GLG KI ++I KA ++ + G E + ++ D ++ +A+ + GV Sbjct: 420 AKGLGNKIDAMIRQQKAVKEVRGFLEDIYNKTGDIKDREDLKNFSDKELMDLAQNLRGGV 479 Query: 1205 PVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVS 1264 P++T VFDGA E I S+LR+ADL +SGQ LYDG +G+ F RPVTVGY+Y+LKLNH+V Sbjct: 480 PMATRVFDGAKETEIKSLLRLADLPDSGQMTLYDGRSGDAFTRPVTVGYMYVLKLNHLVD 539 Query: 1265 DKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVG 1324 DK++ARSTGSYSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV G Sbjct: 540 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAG 599 Query: 1325 RTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 RT++Y++IV G+ E G PESFNVLVKE+++LG++++LE Sbjct: 600 RTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGINMELE 639 >gi|227522985|ref|ZP_03953034.1| DNA-directed RNA polymerase subunit beta [Lactobacillus hilgardii ATCC 8290] gi|227089803|gb|EEI25115.1| DNA-directed RNA polymerase subunit beta [Lactobacillus hilgardii ATCC 8290] Length = 1205 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 425/963 (44%), Positives = 585/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY+ FL +GL+ F Sbjct: 4 LAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTNSYNWFL----------KDGLRETFD 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ VD+ + Y+ PL ITL+L + D Sbjct: 54 GIMPIDDFQGKLSLEFVDYQLLEPKYTVDEAREHEANYSAPLHITLKLTNHETD------ 107 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSP +++ D + +G++ Y Sbjct: 108 ---EIKTQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPSVYYHEDTDK---NGRISY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E DSK+I +VRIDR RK+P+T + A G S+ EI Sbjct: 162 GTTVIPNRGAWLEFETDSKNISYVRIDRTRKIPLTELIRAFGFGSDGEITDILGDNDSLE 221 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + D V + + GE ES + L + K + +G Sbjct: 222 LTLEKD-VHKDTDDSRVEESLKDIYERLRPGEPKTAESSRSLLTARFFDPKRYDMAPVGR 280 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L GL +AE + + ETGE+ ++ V+ + ++++ Y+D Sbjct: 281 YKTNKKLSLKNRLLGLTLAETLADPETGEVIVQKDTVVTKDVMKKLSP---------YLD 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 AY N +D+ + + I +V D Sbjct: 332 QKEFKAYTFNP--SDEAVVTEPMTVQIIKVYSANDP------------------------ 365 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + P +HI DIIA + +L+ G G+IDDID+LGNRR+RSVGE+ Sbjct: 366 --EKVVPLIGNDNIPLAFKHITPADIIASMNYFFNLQEGIGSIDDIDHLGNRRIRSVGEL 423 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 424 LQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 483 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+S+A Sbjct: 484 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA 543 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFIETPYR+V KVT+ + YL+A EE+N IAQANS L++DGSF +V R Sbjct: 544 RINKYGFIETPYRRVDWTSHKVTDRIDYLTADEEDNFVIAQANSPLNDDGSFVNNVVMAR 603 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 I + +K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 604 HKSNNIEISIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVDPHA 663 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTG+E A SG A++ K AG VE VDA + IR +G LD Y+LMKF+ Sbjct: 664 PLVGTGIEYKAAHDSGVALICKFAGTVEYVDAREVRIRRDDGTLDK-------YKLMKFR 716 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQRP+V+VGD V ++++ADGPS + G+LALG+N +VAFM W GYNFED++ Sbjct: 717 RSNGGKNYNQRPIVRVGDHVDPDEVLADGPSMEGGELALGQNPIVAFMTWQGYNFEDAIA 776 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 ISER+V +DV+TSIHIEE+E RDTKLGPEE+TR+IPNV E+ LK++DE G I +GAEV Sbjct: 777 ISERLVKDDVYTSIHIEEYESETRDTKLGPEEMTREIPNVGEDALKDLDEGGTIRIGAEV 836 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 + GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G V DV++F R Sbjct: 837 HDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIVQDVKVFTRE 896 Query: 949 GID 951 D Sbjct: 897 NGD 899 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 251/1072 (23%), Positives = 392/1072 (36%), Gaps = 170/1072 (15%) Query: 345 PILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSD 404 IL + ++ + +++L DIY +RPG+ T + S+ FFD Sbjct: 212 DILGDNDSLELTLEKDVHKDTDDSRVEESLKDIYERLRPGEPKTAESSRSLLTARFFDPK 271 Query: 405 KYDLSTVGRV----KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLG 460 +YD++ VGR K++++ L + + +I + L Sbjct: 272 RYDMAPVGRYKTNKKLSLKNRLLGLTLAETLADPETGEVIVQKDTVVTKDVMKKLSPYLD 331 Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSS 520 + ++ ++ + + IK ++ V N + + Sbjct: 332 QKEFKAYTFNPSDEAVVTEPMTVQIIKVYSANDPEKVVPLIGNDNIPLAFKHITPADIIA 391 Query: 521 QLSQLEEHVNSLSRITHT-----RRLSALGQ-------GGVARARAGVEMR-------DV 561 ++ + I RR+ ++G+ G++R V R V Sbjct: 392 SMNYFFNLQEGIGSIDDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMSIQDTSTV 451 Query: 562 HPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK----------------V 605 P I P S G + N G + R V Sbjct: 452 TPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEV 511 Query: 606 CDGKVTNDVVYLSAMEEENRYIAQANS--SLDEDGSFTEELVFCRCAGEEILVPREKIDF 663 D T+ E I NS S + R ++ID+ Sbjct: 512 RDVHYTHYGRMCPIETPEGPNIGLINSLSSYARINKYGFIETPYRRVDWTSHKVTDRIDY 571 Query: 664 IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSS 723 + A + IA + P +D + M R ++ V V+ Sbjct: 572 LTADEEDNFVIAQANSPL---NDDGSFVNNVVMARHKSNNIEISIDKVD---YMDVSPKQ 625 Query: 724 GAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVK 783 A+ +E D+ R ++ + QR PLV Sbjct: 626 VVAVATACIPFLENDDSNRALMGAN------------------MQRQAVPLVDPHAPLVG 667 Query: 784 VGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH 843 G + + VA + E R+ +D Sbjct: 668 TGI-----------------EYKAAHDSGVALICKFAGTVEYVDAREVRIRRDD----GT 706 Query: 844 IEEFEVM-ARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKG 902 ++++++M R + G R I V + ++D ++ G + G++ +G Sbjct: 707 LDKYKLMKFRRSNGGKNYNQRPIVRVGD----HVDPDEVLADGPSMEGGELALG------ 756 Query: 903 ESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + E A+ + + ++ S + + R E Sbjct: 757 -QNPIVAFMTWQGYNFEDAIAISERLVKDDVYTSIHIEEYESETRDTKLGPEEMTREIPN 815 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E +D D+ I G G K T +S R Sbjct: 816 VGEDALKDLDEGGTI------------RIGAEVHDGDILVGKVTPKGVTELSAEERLLHA 863 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 F + +V+ + + K+ + GD++ PGV R+V+V++A KR Sbjct: 864 IFGEKSREVRDTSLRVPHGGGGIVQDV------KVFTRENGDELSPGVNRMVRVYIAQKR 917 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 IQ GDKM+GRHGNKG VS ++P EDMPFL DGTPVDI+L+P+GVPSRMN+GQ+ E HLG Sbjct: 918 KIQVGDKMSGRHGNKGTVSVVIPEEDMPFLPDGTPVDIMLSPMGVPSRMNIGQVLELHLG 977 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG + + + D ++ DI Sbjct: 978 MAARKLGIHVATPVFDGASDKDIWNAVKEAGMPKDGKYIL-------------------- 1017 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G++ GEPFD+P+ VG ++ LKL HM Sbjct: 1018 ---------------------------YDGRT-------GEPFDKPIAVGVMHYLKLAHM 1043 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDV Sbjct: 1044 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDV 1103 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKM 1374 VGR + YE+IV G + G PESF VLVKE+Q+LGL + + +S K Sbjct: 1104 VGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLDMKVLDSSHKEIELR 1155 >gi|256847754|ref|ZP_05553199.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715443|gb|EEU30419.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus coleohominis 101-4-CHN] Length = 1196 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 423/966 (43%), Positives = 587/966 (60%), Gaps = 84/966 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A +V G R R+ + + E++D+P+LIE+Q SY+ F+ ++G++ F Sbjct: 4 LAGHLVKYGKHRTRRSYSRIKEVLDLPNLIEIQTNSYNWFM----------DKGIREMFN 53 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F G LEFV Y+ PK+ VD+ D Y+ PL +TLRL + Sbjct: 54 DIMPIDDFQGKLSLEFVDYQLMEPKYTVDEAREHDANYSAPLHVTLRLTSHE-------- 105 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT GTF+I G +R++VSQL RSPG++++ + + +G Y Sbjct: 106 -TGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYNEETDK---NGWPSY 161 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFY---PKI 236 IP++G W++ E D+K I +VRIDR RK+P+T + ALG S+ EI+ + Sbjct: 162 GANFIPNRGAWLEYETDAKGISYVRIDRTRKLPLTELVRALGFGSDDEIIEMLGGNSDSL 221 Query: 237 VYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKF 295 + D A D V + + GE +S + L + K + Sbjct: 222 SATLDKDVHK---DAEDSRVEEALKDIYERLRPGEPKTADSARSLLTARFFDPKRYDMAP 278 Query: 296 LGITS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL 347 +G L G +AE + + ETGEI GDV+ ++ L+++ + D Sbjct: 279 VGRYKTNKKLKMKYRLLGQTLAETLADPETGEILANKGDVVTKEVLKKLEPALESD---- 334 Query: 348 YVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYD 407 +A++ + K D Sbjct: 335 -------------DFKMVTYTPSDEAVVTAPVKL----------------QKILVYSKKD 365 Query: 408 LSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSV 467 V + N + P +++HI+ DIIA + +L+ G G+ DDID+LGNRR+RSV Sbjct: 366 PERVVPIVSNGHI----PLELKHIQPADIIASVNYFFNLQEGIGSTDDIDHLGNRRIRSV 421 Query: 468 GEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEE 527 GE+L+NQ+R+GL RMER ++ER+S DI++V PQ LIN +PVV+++ EFF SSQLSQ + Sbjct: 422 GELLQNQFRIGLARMERVVRERMSIQDINTVTPQQLINIRPVVASIKEFFGSSQLSQFMD 481 Query: 528 HVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 N L +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL+ Sbjct: 482 QTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLS 541 Query: 588 SFARVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELV 645 S+ARVN YGFIETPYR+V KVT+ + YL+A EE+N IAQAN+ L++DGSF E+ + Sbjct: 542 SYARVNKYGFIETPYRRVSWETHKVTDKIDYLTADEEDNYIIAQANTKLNDDGSFAEDEI 601 Query: 646 FCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 CR + I E +D++D SPKQVVS+A++ IPFLENDDSNR LMG NMQRQAVPL+ Sbjct: 602 MCRDKDDYISTTAENVDYMDISPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLIN 661 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 AP +GTG+E A SG A++AK +G VE VDA I +R + LD Y+LM Sbjct: 662 PHAPLIGTGIEYKAAHDSGVALIAKYSGTVEYVDAREIRVRRDDDTLD-------TYKLM 714 Query: 766 KFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 KF+RSN NQRP+VKVG+ V +DI+ADGPS + G+LALG+N L+AFM W GYNFED Sbjct: 715 KFRRSNGGKNYNQRPIVKVGEHVDADDILADGPSMEQGELALGQNPLIAFMTWQGYNFED 774 Query: 826 SMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVG 885 ++ ISER+V +DV+TSIHIE +E AR+TKLGPEE+TR+IPNV + LKN+DE G++ VG Sbjct: 775 AIAISERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVGADALKNLDENGVVRVG 834 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 AEV+ GDILVGK+TPKG + ++ EE+LL AIFGEK+ +VRDTSLRVP G G + DV++F Sbjct: 835 AEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVF 894 Query: 946 NRHGID 951 R D Sbjct: 895 TRENGD 900 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 248/1070 (23%), Positives = 407/1070 (38%), Gaps = 114/1070 (10%) Query: 319 EIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIY 378 E+ G D++ +E + + L D ++ ++AL DIY Sbjct: 197 ELVRALGFGSDDEIIEMLGGNSDSLSATLDKDV----------HKDAEDSRVEEALKDIY 246 Query: 379 RVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIA 438 +RPG+ T A S+ FFD +YD++ VGR K N +L K Sbjct: 247 ERLRPGEPKTADSARSLLTARFFDPKRYDMAPVGRYKTNKKL------------KMKYRL 294 Query: 439 IIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSV 498 + + L + T + + N G+ + V + L+ +M + V Sbjct: 295 LGQTLAETLADPETGEILANKGDVVTKEVLKKLEPALESDDFKMVTYTPSDEAVVTAPVK 354 Query: 499 MPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGV-- 556 + + L+ +K V + + +H+ I L +G + Sbjct: 355 LQKILVYSKKDPERVVPIVSNGHIPLELKHIQPADIIASVNYFFNLQEGIGSTDDIDHLG 414 Query: 557 --EMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDV 614 +R V + + S+ V I R V Sbjct: 415 NRRIRSVGELLQNQFRIGLARMERVVRERMSIQDINTVTPQQLI--NIRPVVASIK---- 468 Query: 615 VYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSI 674 + + + L + + + + Sbjct: 469 EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIET 528 Query: 675 AAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAG 733 I + + S + + E V ++ + A I+A+ Sbjct: 529 PEGPNIGLINSLSSYARVNKYGFIETPYRRVSWETHKVTDKIDYLTADEEDNYIIAQANT 588 Query: 734 IVEQ--VDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR--SNQNTCVNQRPLVKVGDEVR 789 + A ++ + D +T+ Y + ++ S + C+ + Sbjct: 589 KLNDDGSFAEDEIMCRDKDDYISTTAENVDYMDISPKQVVSVASACIP---------FLE 639 Query: 790 RNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEV 849 +D ++ A+ A + G ++ + ++++ T +++ E+ Sbjct: 640 NDDSNRALMGANMQRQAVPLINPHAPLIGTGIEYKAAHDSGVALIAKYSGTVEYVDAREI 699 Query: 850 MARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPE 909 R + S G KN ++ I+ VG V+ DIL + + + Sbjct: 700 RVRRDDDTLDTYKLMKFRRSNGG-KNYNQRPIVKVGEHVDADDILADGPS-MEQGELALG 757 Query: 910 EKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLAR 969 + L A + + D V V + + E + E E+ Sbjct: 758 QNPLIAFMTWQGYNFEDAIAISERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNV 817 Query: 970 DKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDE 1029 D + + + + G G K T +S R F + Sbjct: 818 GADALKNLDENGVVR------VGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKSR 871 Query: 1030 KVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDK 1089 +V+ + + K+ + GD++ PGV ++V+V++A KR IQ GDK Sbjct: 872 EVRDTSLRVPHGGGGIIQDV------KVFTRENGDELSPGVNKMVRVYIAQKRKIQVGDK 925 Query: 1090 MAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLG 1149 M+GRHGNKG VS ++P EDMP++ DGTP+DI+L+P+GVPSRMN+GQ+ E HLG A LG Sbjct: 926 MSGRHGNKGTVSIVVPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQVIELHLGMAARELG 985 Query: 1150 KKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTP 1209 I + + D + D Sbjct: 986 IHIATPVFDGATDQD--------------------------------------------- 1000 Query: 1210 VFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYA 1269 V+D E A L G++ILYDG TGEPF++ V VG ++ LKL HMV DK++A Sbjct: 1001 VWDAVKE---------AGLPSDGKTILYDGRTGEPFEQRVAVGVMHYLKLAHMVDDKIHA 1051 Query: 1270 RSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVY 1329 RS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR Y Sbjct: 1052 RSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVNTY 1111 Query: 1330 ESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 ++I+ G+ + G PESF VLVKE+Q+LGL + + ++ + D Sbjct: 1112 DAIINGDQIPKPGVPESFRVLVKELQSLGLDMKVLDNNHEEVQLKNMDED 1161 >gi|168178824|ref|ZP_02613488.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum NCTC 2916] gi|226950941|ref|YP_002806032.1| DNA-directed RNA polymerase subunit beta [Clostridium botulinum A2 str. Kyoto] gi|254765283|sp|C1FMV9|RPOB_CLOBJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|182670035|gb|EDT82011.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum NCTC 2916] gi|226841129|gb|ACO83795.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum A2 str. Kyoto] gi|322807814|emb|CBZ05389.1| DNA-directed RNA polymerase beta subunit [Clostridium botulinum H04402 065] Length = 1232 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 440/951 (46%), Positives = 601/951 (63%), Gaps = 57/951 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F + E+ +P+LIEVQ SYD FL EGLQ F + PI ++G Sbjct: 9 KRTRMSFSRLKEVGQMPNLIEVQLDSYDWFL----------KEGLQEVFDDINPIQDYTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV Y+ D K+ V++C RD TYA PLK+ +RL+ K +IKEQ Sbjct: 59 NLNLEFVGYKLDLDSIKYSVEECKERDSTYAAPLKVKVRLL---------NKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++D + G L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDMTVDKT---GSKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS--QRGDFW 245 G W++ E DS +II+VRID+ RK+P+T ALG ++ EI+ F D Sbjct: 167 GAWLEYETDSNNIIYVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATIEKDNT 226 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 A + +D+ E +IES L + + K K L I + Sbjct: 227 KTREEALLEIYKRLRPGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNKKLAIHL-RI 285 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 +DIVN +TGEI ++ G+ ID+ EI + I ++ I D + I N V Sbjct: 286 TNQIADQDIVNPQTGEILVQKGEKIDKDKAIEIQNCGINEVYIKIDD--KSFKVIGNHFV 343 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL-FFDSDKYDLSTVGRVKMNMRLNL 422 + + P D+S ++ E +F + D Y + ++ + Sbjct: 344 DIHS-------------LVPFDISDLNIKEYVFYPVLKEILDNYADEESIKEEIRKNIYR 390 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 P +HI +EDI A I + L G DDID+LGNRR+RSVGE+L+NQ+R+GL RM Sbjct: 391 LIP---KHIIREDIYATINYELGLSYDIGYKDDIDHLGNRRLRSVGELLQNQFRIGLSRM 447 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER +KER++ D + + PQ LIN +PV +++ EFF SSQLSQ + N LS +TH RRLS Sbjct: 448 ERVVKERMTIQDQEVITPQALINIRPVAASIKEFFGSSQLSQFMDQTNPLSELTHKRRLS 507 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +FA+VN YGFIETPY Sbjct: 508 ALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFAKVNEYGFIETPY 567 Query: 603 RKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 R++ + + TND+VY++A EE+ IA+++ +DE+G F ++ V R E ++VP + Sbjct: 568 RRIDPKNKRATNDIVYMTADEEDLYVIARSDEPIDENGYFIDDKVTVRAKEEVLVVPVSE 627 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++++D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E A Sbjct: 628 VEYMDISPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEYKAA 687 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG AK AG V V A I +R S G+D Y+L+KF+RSNQ TC+NQRP Sbjct: 688 TDSGVLPKAKNAGTVVYVSADEIRVRRD------SDGGIDKYKLLKFKRSNQGTCINQRP 741 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V G+ V + ++ADGPSTDLG++ALG+N+L+ F+ W GYN+ED+MLISE++V EDVFT Sbjct: 742 IVSKGEVVAKETLLADGPSTDLGEIALGKNILMGFITWEGYNYEDAMLISEQLVKEDVFT 801 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE+E ARDTKLGPEEITRDIPNV EE LK+IDE GII +GAEV GDILVGK+TP Sbjct: 802 SIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDERGIIRIGAEVRSGDILVGKVTP 861 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV+IF R D Sbjct: 862 KGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKIFTRENGD 912 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 187/544 (34%), Positives = 253/544 (46%), Gaps = 78/544 (14%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E+ R G + + + I++ I+ G V +L + Sbjct: 709 EIRVRRDSDGGIDKYKLLKFKRSNQGTCINQRPIVSKGEVVAKETLLADGPSTDLGEIAL 768 Query: 908 PEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + L+ I E A+ + + ++ S + + R E Sbjct: 769 GKNILMGFITWEGYNYEDAMLISEQLVKEDVFTSIHIEEYEAEARDTKLGPEEITRDIPN 828 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E +D DE+ I+ R +IL G+ G L + E R Sbjct: 829 VGEEALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR---- 883 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 E KI + GD++PPGV ++V+ ++A KR Sbjct: 884 -------------EVRDTSLRVPHGEAGIIVDVKIFTRENGDELPPGVNKLVRCYIAQKR 930 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E HLG Sbjct: 931 KISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLG 990 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG I + + D DI Sbjct: 991 LAASKLGWHIATPVFDGAIESDIVDCLRKA------------------------------ 1020 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G E+ G+++LYDG TGEPFD VTVGY+Y+LKL H+ Sbjct: 1021 ----------GYSED--------------GKTVLYDGRTGEPFDNRVTVGYMYILKLAHL 1056 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDV Sbjct: 1057 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDV 1116 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 VGR + YE+IV G + E G PESF VL+KE+QAL L + + N + E + D + Sbjct: 1117 VGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDDNQEIKLKESV-DEDA 1175 Query: 1383 CELK 1386 EL+ Sbjct: 1176 DELE 1179 >gi|153939112|ref|YP_001392842.1| DNA-directed RNA polymerase subunit beta [Clostridium botulinum F str. Langeland] gi|166229293|sp|A7GJ82|RPOB_CLOBL RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|152935008|gb|ABS40506.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum F str. Langeland] gi|295320821|gb|ADG01199.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum F str. 230613] Length = 1234 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 440/951 (46%), Positives = 601/951 (63%), Gaps = 57/951 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F + E+ +P+LIEVQ SYD FL EGLQ F + PI ++G Sbjct: 9 KRTRMSFSRLKEVGQMPNLIEVQLDSYDWFL----------KEGLQEVFDDINPIQDYTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV Y+ D K+ V++C RD TYA PLK+ +RL+ K +IKEQ Sbjct: 59 NLNLEFVGYKLDLDSIKYSVEECKERDSTYAAPLKVKVRLL---------NKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++D + G L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDMTVDKT---GSKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS--QRGDFW 245 G W++ E DS +II+VRID+ RK+P+T ALG ++ EI+ F D Sbjct: 167 GAWLEYETDSNNIIYVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATIEKDNT 226 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 A + +D+ E +IES L + + K K L I + Sbjct: 227 KTREEALLEIYKRLRPGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNKKLAIHL-RI 285 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 +DIVN +TGEI ++ G+ ID+ EI + I ++ I D + I N V Sbjct: 286 TNQIADQDIVNPQTGEILVQKGEKIDKDKAIEIQNCGINEVYIKIDD--KSFKVIGNHFV 343 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL-FFDSDKYDLSTVGRVKMNMRLNL 422 + + P D+S ++ E +F + D Y + ++ + Sbjct: 344 DIHS-------------LVPFDISDLNIKEYVFYPVLKEILDNYADEESIKEEIRKNIYR 390 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 P +HI +EDI A I + L G DDID+LGNRR+RSVGE+L+NQ+R+GL RM Sbjct: 391 LIP---KHIIREDIYATINYELGLSYDIGYKDDIDHLGNRRLRSVGELLQNQFRIGLSRM 447 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER +KER++ D + + PQ LIN +PV +++ EFF SSQLSQ + N LS +TH RRLS Sbjct: 448 ERVVKERMTIQDQEVITPQALINIRPVAASIKEFFGSSQLSQFMDQTNPLSELTHKRRLS 507 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +FA+VN YGFIETPY Sbjct: 508 ALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFAKVNEYGFIETPY 567 Query: 603 RKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 R++ + + TND+VY++A EE+ IA+++ +DE+G F ++ V R E ++VP + Sbjct: 568 RRIDPKNKRATNDIVYMTADEEDLYVIARSDEPIDENGYFIDDKVTVRAKEEVLVVPVSE 627 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++++D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E A Sbjct: 628 VEYMDISPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEYKAA 687 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG AK AG V V A I +R S G+D Y+L+KF+RSNQ TC+NQRP Sbjct: 688 TDSGVLPKAKNAGTVVYVSADEIRVRRD------SDGGIDKYKLLKFKRSNQGTCINQRP 741 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V G+ V + ++ADGPSTDLG++ALG+N+L+ F+ W GYN+ED+MLISE++V EDVFT Sbjct: 742 IVSKGEVVAKETLLADGPSTDLGEIALGKNILMGFITWEGYNYEDAMLISEQLVKEDVFT 801 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE+E ARDTKLGPEEITRDIPNV EE LK+IDE GII +GAEV GDILVGK+TP Sbjct: 802 SIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDERGIIRIGAEVRSGDILVGKVTP 861 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV+IF R D Sbjct: 862 KGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKIFTRENGD 912 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 187/544 (34%), Positives = 253/544 (46%), Gaps = 78/544 (14%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E+ R G + + + I++ I+ G V +L + Sbjct: 709 EIRVRRDSDGGIDKYKLLKFKRSNQGTCINQRPIVSKGEVVAKETLLADGPSTDLGEIAL 768 Query: 908 PEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + L+ I E A+ + + ++ S + + R E Sbjct: 769 GKNILMGFITWEGYNYEDAMLISEQLVKEDVFTSIHIEEYEAEARDTKLGPEEITRDIPN 828 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E +D DE+ I+ R +IL G+ G L + E R Sbjct: 829 VGEEALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR---- 883 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 E KI + GD++PPGV ++V+ ++A KR Sbjct: 884 -------------EVRDTSLRVPHGEAGIIVDVKIFTRENGDELPPGVNKLVRCYIAQKR 930 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E HLG Sbjct: 931 KISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLG 990 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG I + + D DI Sbjct: 991 LAASKLGWHIATPVFDGAIESDIVDCLRKA------------------------------ 1020 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G E+ G+++LYDG TGEPFD VTVGY+Y+LKL H+ Sbjct: 1021 ----------GYSED--------------GKTVLYDGRTGEPFDNRVTVGYMYILKLAHL 1056 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDV Sbjct: 1057 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDV 1116 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 VGR + YE+IV G + E G PESF VL+KE+QAL L + + N + E + D + Sbjct: 1117 VGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDDNQEIKLKESV-DEDA 1175 Query: 1383 CELK 1386 EL+ Sbjct: 1176 DELE 1179 >gi|148381429|ref|YP_001255970.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum A str. ATCC 3502] gi|153933778|ref|YP_001385804.1| DNA-directed RNA polymerase subunit beta [Clostridium botulinum A str. ATCC 19397] gi|166229292|sp|A7FZ77|RPOB_CLOB1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|182676559|sp|A5I7L4|RPOB_CLOBH RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|148290913|emb|CAL85049.1| DNA-directed RNA polymerase beta chain [Clostridium botulinum A str. ATCC 3502] gi|152929822|gb|ABS35322.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum A str. ATCC 19397] Length = 1232 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 440/951 (46%), Positives = 601/951 (63%), Gaps = 57/951 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F + E+ +P+LIEVQ SYD FL EGLQ F + PI ++G Sbjct: 9 KRTRMSFSRLKEVGQMPNLIEVQLDSYDWFL----------KEGLQEVFDDINPIQDYTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV Y+ D K+ V++C RD TYA PLK+ +RL+ K +IKEQ Sbjct: 59 NLNLEFVGYKLDLDSIKYSVEECKERDSTYAAPLKVKVRLL---------NKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++D + G L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDMTVDKT---GSKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS--QRGDFW 245 G W++ E DS +II+VRID+ RK+P+T ALG ++ EI+ F D Sbjct: 167 GAWLEYETDSNNIIYVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATIEKDNT 226 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 A + +D+ E +IES L + + K K L I + Sbjct: 227 KTREEALLEIYKRLRPGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNKKLAIHL-RI 285 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 +DIVN +TGEI ++ G+ ID+ EI + I ++ I D + I N V Sbjct: 286 TNQIADQDIVNPQTGEILVQKGEKIDKDKAIEIQNCGINEVYIKIDD--KSFKVIGNHFV 343 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL-FFDSDKYDLSTVGRVKMNMRLNL 422 + + P D+S ++ E +F + D Y + ++ + Sbjct: 344 DIHS-------------LVPFDISDLNIKEYVFYPVLKEILDNYADEESIKEEIRKNIYR 390 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 P +HI +EDI A I + L G DDID+LGNRR+RSVGE+L+NQ+R+GL RM Sbjct: 391 LIP---KHIIREDIYATINYELALSYDIGYKDDIDHLGNRRLRSVGELLQNQFRIGLSRM 447 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER +KER++ D + + PQ LIN +PV +++ EFF SSQLSQ + N LS +TH RRLS Sbjct: 448 ERVVKERMTIQDQEVITPQALINIRPVAASIKEFFGSSQLSQFMDQTNPLSELTHKRRLS 507 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +FA+VN YGFIETPY Sbjct: 508 ALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFAKVNEYGFIETPY 567 Query: 603 RKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 R++ + + TND+VY++A EE+ IA+++ +DE+G F ++ V R E ++VP + Sbjct: 568 RRIDPKNKRATNDIVYMTADEEDLYVIARSDEPIDENGYFIDDKVTVRAKEEVLVVPVSE 627 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++++D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E A Sbjct: 628 VEYMDISPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEYKAA 687 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG AK AG V V A I +R S G+D Y+L+KF+RSNQ TC+NQRP Sbjct: 688 TDSGVLPKAKNAGTVVYVSADEIRVRRD------SDGGIDKYKLLKFKRSNQGTCINQRP 741 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V G+ V + ++ADGPSTDLG++ALG+N+L+ F+ W GYN+ED+MLISE++V EDVFT Sbjct: 742 IVSKGEVVAKETLLADGPSTDLGEIALGKNILMGFITWEGYNYEDAMLISEQLVKEDVFT 801 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE+E ARDTKLGPEEITRDIPNV EE LK+IDE GII +GAEV GDILVGK+TP Sbjct: 802 SIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDERGIIRIGAEVRSGDILVGKVTP 861 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV+IF R D Sbjct: 862 KGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKIFTRENGD 912 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 187/544 (34%), Positives = 253/544 (46%), Gaps = 78/544 (14%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E+ R G + + + I++ I+ G V +L + Sbjct: 709 EIRVRRDSDGGIDKYKLLKFKRSNQGTCINQRPIVSKGEVVAKETLLADGPSTDLGEIAL 768 Query: 908 PEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + L+ I E A+ + + ++ S + + R E Sbjct: 769 GKNILMGFITWEGYNYEDAMLISEQLVKEDVFTSIHIEEYEAEARDTKLGPEEITRDIPN 828 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E +D DE+ I+ R +IL G+ G L + E R Sbjct: 829 VGEEALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR---- 883 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 E KI + GD++PPGV ++V+ ++A KR Sbjct: 884 -------------EVRDTSLRVPHGEAGIIVDVKIFTRENGDELPPGVNKLVRCYIAQKR 930 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E HLG Sbjct: 931 KISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLG 990 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG I + + D DI Sbjct: 991 LAASKLGWHIATPVFDGAIESDIVDCLRKA------------------------------ 1020 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G E+ G+++LYDG TGEPFD VTVGY+Y+LKL H+ Sbjct: 1021 ----------GYSED--------------GKTVLYDGRTGEPFDNRVTVGYMYILKLAHL 1056 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDV Sbjct: 1057 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDV 1116 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 VGR + YE+IV G + E G PESF VL+KE+QAL L + + N + E + D + Sbjct: 1117 VGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDDNQEIKLKESV-DEDA 1175 Query: 1383 CELK 1386 EL+ Sbjct: 1176 DELE 1179 >gi|288904307|ref|YP_003429528.1| RNA polymerase (beta subunit) [Streptococcus gallolyticus UCN34] gi|306830337|ref|ZP_07463507.1| DNA-directed RNA polymerase subunit beta [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977303|ref|YP_004287019.1| DNA-directed RNA polymerase subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731032|emb|CBI12576.1| RNA polymerase (beta subunit) [Streptococcus gallolyticus UCN34] gi|304427362|gb|EFM30464.1| DNA-directed RNA polymerase subunit beta [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177231|emb|CBZ47275.1| DNA-directed RNA polymerase subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1190 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 585/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DNGLREVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PIT F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPITNFTDTMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIMDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPADSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG V+ ++ I D+ Sbjct: 278 YKINKKLNVKTRLLNQTIAENLVDAETGEILVEAGTVMTRDVIDSIAEQLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVSPVDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D R + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 362 --NRVVTIVGNANPDDKARALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+++ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSTYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGVVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 600 HQGNNQEFPSNIVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++AK G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAKHDGRVVFSDAEKVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYN+ED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMEKGEMALGQNPIVAYMTWDGYNYEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1234), Expect = e-132, Method: Composition-based stats. Identities = 171/508 (33%), Positives = 236/508 (46%), Gaps = 79/508 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + D + V V Sbjct: 725 LVKVGDIVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWDGYNYEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQI----ELLARDKDDEQVILDRNIYSRLMEILCGQN 994 + + + E +I E +D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDL-DEMGIIRIGAEVKEGDILVGKV 842 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K L + + R +V+ + + + Sbjct: 843 TPKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV----- 886 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L D Sbjct: 887 -KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPD 945 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D + D+ Sbjct: 946 GTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGATSEDLWDTVREAGM 1005 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 T ++DG Sbjct: 1006 DSDAK----------------------------TVLYDG--------------------- 1016 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1017 -----RTGEPFDNRVSVGIMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRF 1071 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+ Sbjct: 1072 GEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKEL 1131 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNK 1382 Q+LGL + + + + + Sbjct: 1132 QSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|291549812|emb|CBL26074.1| DNA-directed RNA polymerase subunit beta [Ruminococcus torques L2-14] Length = 1287 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 434/953 (45%), Positives = 593/953 (62%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++++P+LIEVQK SY FL ++GL+ F + PI ++G Sbjct: 13 KSFRMSYSRQQEVLEMPNLIEVQKDSYQWFL----------DKGLKEVFDDISPIADYNG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + + K+ +D+C RD TYA PLK+ +RL K +I E Sbjct: 63 HLSLEFVDFTLCEEDAKYTIDECKERDATYAAPLKVRVRLY---------NKETDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMTK GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 114 EIFMGDLPLMTKTGTFVINGAERVIVSQLVRSPGIYYGIAHDKF---GKKLYSATVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG+ + EI+ F K++ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGVGTNAEIIELFGEEPKLLASFGKDTS 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 231 ENYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDPRRYDLAKVGRYKFNKKL-LLKNRV 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED V+ TGE+ E G I + + I ++ + I + ++ N + N +V Sbjct: 290 SGQILAEDAVSAITGEVVAEKGTKITREIADMIQNAAVPYIWVEGEETSRNIKVLSNMMV 349 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 + A++DI D + V E ++ + + V +K ++ +L Sbjct: 350 DLQ------AVVDI-------DPAEVGVTEQVYYPVLAGIIEESAGDVDEMKRLIKRDLH 396 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI A I + L G G DDID+LGNRR+R+VGE+L+NQYR+GL R+E Sbjct: 397 -DLIPKHITKEDIFASINYNMHLEYGMGNDDDIDHLGNRRIRAVGELLQNQYRIGLSRLE 455 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D D + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 456 RVVRERMTTQDQDGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 515 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +AR+N YGFIE PYR Sbjct: 516 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLACYARINEYGFIEAPYR 575 Query: 604 KVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 K+ + VT++VVY++A EE+N ++AQAN+ LDE+G F + V R E R Sbjct: 576 KIDKTDPMNPVVTDEVVYMTADEEDNYHVAQANTPLDEEGHFINKNVSGRYREETQDYER 635 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 K D++D SPK V S+A +LIPFL+NDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 636 NKFDYMDVSPKMVFSVATALIPFLQNDDANRALMGSNMQRQAVPLLTTEAPVVGTGMEVK 695 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG A VA++AG+VE + I IR +G Y+L KFQRSNQ+ C NQ Sbjct: 696 TAVDSGVAEVAEQAGVVESSTSTSITIRHDDGTK-------KTYKLTKFQRSNQSNCYNQ 748 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V G+ V +IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V +DV Sbjct: 749 RPIVDKGERVEAGQVIADGPSTSGGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQDDV 808 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRDIP V ++ LK++DE GII +GAEV GDILVGK+ Sbjct: 809 YTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDLDERGIIRIGAEVRAGDILVGKV 868 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R D Sbjct: 869 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTRENGD 921 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 244/1067 (22%), Positives = 400/1067 (37%), Gaps = 79/1067 (7%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 ++ + + D +++ ++ LL++Y+ +RPG+ AES+ +FFD +YDL Sbjct: 212 IELFGEEPKLLASFGKDTSENYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDPRRYDL 271 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 + VGR K N +L L + + ++ + AI G+ + + + Sbjct: 272 AKVGRYKFNKKLLLKNRVSGQILAEDAVSAIT--------GEVVAEKGTKITREIADMIQ 323 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 + R+IK + + + V V + + + Sbjct: 324 NAAVPYIWVEGEETSRNIKVLSNMMVDLQAVVDIDPAEVGVTEQVYYPVLAGIIEESAGD 383 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 V+ + R+ R L L + + + YG + N + ++ Sbjct: 384 VDEMKRLI-KRDLHDLIPKHITKEDIFASINYNMHLEYGMGNDDDIDHLGN-RRIRAVGE 441 Query: 589 FARVNAYGFIETPYRKVCDGKVTND-----------VVYLSAMEEENRYIAQANSSLDED 637 + + R V + T D + ++A +E +Q + +D++ Sbjct: 442 LLQNQYRIGLSRLERVVRERMTTQDQDGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQN 501 Query: 638 ---GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 G T + + R + D + P N L Sbjct: 502 NPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLACY 561 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS----VEG 750 + + T + V + A A + + Sbjct: 562 ARINEYGFIEAPYRKIDKTDPMNPVVTDEVVYMTADEEDNYHVAQANTPLDEEGHFINKN 621 Query: 751 DLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRN 810 Y KF + + + V + A+ Sbjct: 622 VSGRYREETQDYERNKFDYMDVSPKMVFS--VATALIPFLQNDDANRALMGSNMQRQAVP 679 Query: 811 MLVAFMPWHGYNFEDSMLISERMVSEDVFTSIH-IEEFEVMARDTKLGPEEITRDIPNVS 869 +L P G E + + + + G ++ + Sbjct: 680 LLTTEAPVVGTGMEVKTAVDSGVAEVAEQAGVVESSTSTSITIRHDDGTKKTYKLTKFQR 739 Query: 870 EEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSL 929 ++ I+ G V G ++ + G M + L + + D L Sbjct: 740 SNQSNCYNQRPIVDKGERVEAGQVIADGPSTSG-GEMALGKNPLIGFMTWEGYNYEDAVL 798 Query: 930 RVPSGVSGTVVDVRIFNRHGIDKNERSISVE--REQI--------ELLARDKDDEQVILD 979 V D + H + + + E+I + +D DE+ I+ Sbjct: 799 L----SERLVQDDVYTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDL-DERGIIR 853 Query: 980 RNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLK 1039 R +IL G+ G L + E R E Sbjct: 854 IGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRD 896 Query: 1040 VQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGI 1099 + K+ + GD++ PGV + V++++A KR I GDKMAGRHGNKG+ Sbjct: 897 TSLKVPHGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGV 956 Query: 1100 VSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY 1159 VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG + + + Sbjct: 957 VSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNVSTPVFAG 1016 Query: 1160 KANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAI 1219 DI E + ++ V + Sbjct: 1017 ANENDIMDTLDLAND-YVNLEWDEFEKKHGEELRPEVLQFLSE-------------NRDH 1062 Query: 1220 NSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVT 1279 + + L G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARSTG YSLVT Sbjct: 1063 RELWKGVPLSRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVT 1122 Query: 1280 QQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTF 1339 QQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ G + Sbjct: 1123 QQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGENIP 1182 Query: 1340 ETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCELK 1386 E G PESF VL+KE+Q+L L + + ME + D+ + +L+ Sbjct: 1183 EPGVPESFKVLLKELQSLALDVRVLRDDNTEVKIMESV-DYGETDLR 1228 >gi|322390726|ref|ZP_08064238.1| DNA-directed RNA polymerase subunit beta [Streptococcus parasanguinis ATCC 903] gi|321142553|gb|EFX38019.1| DNA-directed RNA polymerase subunit beta [Streptococcus parasanguinis ATCC 903] Length = 1189 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 422/963 (43%), Positives = 585/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYSLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIIDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAPVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLNIKNRLLNQTIAEPLVDAETGEILVEAGTVMTRDVIDSISEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + L ++V+ P D Sbjct: 330 GLNKITYIPN----DAAVLTEPVELQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR I DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRIITPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D D + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNDVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV G VTN++V+L+A EE+ +AQANS L+E G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREKGVVTNEIVWLTADEEDEYIVAQANSKLNEKGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HRGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYHVQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDAVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV E+ L+++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDALRDLDETGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 168/507 (33%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDAVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEDALRDLDETGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIRVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + + Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGEDD 1159 >gi|322386310|ref|ZP_08059941.1| DNA-directed RNA polymerase subunit beta [Streptococcus cristatus ATCC 51100] gi|321269677|gb|EFX52606.1| DNA-directed RNA polymerase subunit beta [Streptococcus cristatus ATCC 51100] Length = 1190 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EIL F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEILDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLNIKNRLLNQTLAEHLVDAETGEILVEAGTVMTRSVIDSIAEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + L ++V+ P D Sbjct: 330 GLNKITYIPN----DSAVLTEPVELQKFKVVAPSDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + M N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTMIGNANPSDKVRTVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+E G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEKGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 238/1074 (22%), Positives = 395/1074 (36%), Gaps = 132/1074 (12%) Query: 332 SLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFS 390 + + S +I ++ D + N ++ + +AL +IY +RPG+ T Sbjct: 195 LVRALGFSGDDEILDIFGDSDLVRNTIEKDIHKNPMDSRTDEALKEIYERLRPGEPKTAE 254 Query: 391 VAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGK 450 + S+ FFD +YDL+ VGR ++N R + + + + LVD G+ Sbjct: 255 SSRSLLVARFFDPHRYDLAAVGRY----KINKKLNIKNRLLNQ----TLAEHLVDAETGE 306 Query: 451 GTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVV 510 ++ + + S+ E L N K D + + VV Sbjct: 307 ILVEAGTVMTRSVIDSIAEQLDNGLN----------KITYIPNDSAVLTEPVELQKFKVV 356 Query: 511 SAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRIC 570 + ++ + + N ++ L + A R H G Sbjct: 357 APSD----PDRVVTMIGNANPSDKVRTVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRR 412 Query: 571 PAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQA 630 E + L+ R N + +V + ++ ++A +E Sbjct: 413 IRAVGELLANQVRLGLSRMER-NVRERMSVQDNEVLTPQQIINIRPVTAAIKE----FFG 467 Query: 631 NSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRV 690 +S L + L + + + + + + Sbjct: 468 SSQLSQFMDQHNPLSELSHKRRLSALGPGGLT------RDRAGYEVRDVHYTHYGRMCPI 521 Query: 691 LMGCNMQRQAVPLLKAEAPFVGTGMESVVAK--SSGAAIVAKRAGIVEQVDAIRIVIRSV 748 + L + G + A +V + + ++ Sbjct: 522 ETPEGPNIGLINNLSSYGHLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQA 581 Query: 749 EGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDL------ 802 L+ + + + Q +NQ +Q V D + + Sbjct: 582 NSKLNEKGGFAEPIVMGRHQGNNQEFPSDQ---VDYMDVSPKQVVAVATACIPFLENDDS 638 Query: 803 -------GDLALGRNMLVAFMPWHGYNFEDSML--ISERMVSEDVFTSIHIEEFEVMARD 853 ++ P+ G E ++++ + + +V R Sbjct: 639 NRALMGANMQRQAVPLIDPKAPYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRR 698 Query: 854 TKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLL 913 + S G ++ ++ VG V GD + + M + + Sbjct: 699 EDGSLDVYHIQKFRRSNSGTAY-NQRTLVKVGDVVEKGDFIADGPS-MENGEMALGQNPI 756 Query: 914 RAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDK 971 A + + D + V V + + + + E +I + D Sbjct: 757 VAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDA 816 Query: 972 D---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQD 1028 DE I+ + +IL G+ G K L + + R Sbjct: 817 LKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSR---------- 866 Query: 1029 EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGD 1088 +V+ + + + KI GD++ GV +V+V++A KR I+ GD Sbjct: 867 -EVRDTSLRVPHGADGVVRDV------KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGD 919 Query: 1089 KMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGL 1148 KMAGRHGNKG+VSRI+P EDMP+L DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A L Sbjct: 920 KMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNL 979 Query: 1149 GKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVST 1208 G I + + D ++ D+ Sbjct: 980 GIHIATPVFDGASSEDLWSTVREAGM---------------------------------- 1005 Query: 1209 PVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVY 1268 + ++L G TGEPFD V+VG +YM+KL+HMV DK++ Sbjct: 1006 -------DSDAKTIL------YDG-------RTGEPFDNRVSVGVMYMIKLHHMVDDKLH 1045 Query: 1269 ARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRV 1328 ARS G YS VTQQPLGGK+ GGQR GEMEVW ++AYGA+ VLQE+LT KSDD+ GR + Sbjct: 1046 ARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDDINGRLKA 1105 Query: 1329 YESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 YE+I G + G PESF VLVKE+Q+LGL + + + + + D ++ Sbjct: 1106 YEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDDQEVELRDLDEDMDE 1159 >gi|28212181|ref|NP_783125.1| DNA-directed RNA polymerase subunit beta [Clostridium tetani E88] gi|41017721|sp|Q890N4|RPOB_CLOTE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|28204625|gb|AAO37062.1| DNA-directed RNA polymerase beta chain [Clostridium tetani E88] Length = 1236 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 441/955 (46%), Positives = 600/955 (62%), Gaps = 62/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K E+ ++ +LIEVQ SY+ FL EGLQ F + PI ++G Sbjct: 9 KRTRMSFSKIKEVCEMSNLIEVQLDSYEWFLQ----------EGLQEVFDDINPIQDYTG 58 Query: 71 AAMLEFVSYEFDPP--KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV Y+ D K+ V++C RD TYA PLK+++RLI K +IKEQ Sbjct: 59 NLSLEFVGYKLDMENIKYSVEECKERDATYAAPLKVSVRLI---------NKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++D + SGK L++ +IP++ Sbjct: 110 DVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDVSLDK---SGKELFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ E DS DII+VRID+ RK+P++ + AL S+ EI+ F + Sbjct: 167 GAWLEYETDSNDIIYVRIDKTRKLPISILIRALEYGSDLEIIDYFGEDERLKASIEKDNT 226 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD----- 301 L+ K + GE ++S L L K + +G Sbjct: 227 KTKEEALLEIYK------RLRPGEPPTVDSAMSLIGSLFFDAKRYDLSRVGRYKFNKKLA 280 Query: 302 ---CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A+DIVN TGEI ++ G+ ID EI +S I + I D V Sbjct: 281 LHLRIANQISAQDIVNPATGEIVVQEGEKIDRDKAIEIQNSGINSVDIQLDDKVLRVIGN 340 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + K D L V P L D Y + + ++ Sbjct: 341 NFVDIKSFVKFDIDDLNIKEYVHYP--------------TLKEILDNYSDEEMIKEQIKK 386 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 +N+ P +HI ++DI++ I + L G G DDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 387 NINVLIP---KHIIRDDIMSTISYEIGLPYGIGYTDDIDHLGNRRLRSVGELLQNQFRIG 443 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L RMER +KER++ D DS+ PQ LIN +PV +++ EFF SSQLSQ + N LS +TH Sbjct: 444 LSRMERVVKERMTIQDQDSITPQALINIRPVTASIKEFFGSSQLSQFMDQTNPLSELTHK 503 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A+VN YGFI Sbjct: 504 RRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFI 563 Query: 599 ETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 ETPYRKV VT+D++Y++A EE++ IA+AN L++DG+F ++ + R + ++V Sbjct: 564 ETPYRKVDKATGVVTHDIIYMTADEEDHYLIAKANEILNDDGTFIDDKITVRDQEDVLVV 623 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P+E++DF+D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK EAP VGTG+E Sbjct: 624 PKEEVDFMDVSPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPEAPIVGTGIE 683 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A S AK+ G+V V A I ++ + S VD Y+L+KF+RSNQ TC+ Sbjct: 684 YKAAVDSAVLPKAKKPGVVTYVSASEIRVKKDKP---DSNGDVDKYKLLKFKRSNQGTCI 740 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQ+PLV GD+V ++ADGPSTDLG++ALG+N+ + F+ W GYN+ED+MLISE +V E Sbjct: 741 NQKPLVSKGDKVDTKTVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVRE 800 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEE+E ARDTKLGPEEITRDIPNV E+ LK+IDE GII +GAEV GDILVG Sbjct: 801 DVFTSIHIEEYEAEARDTKLGPEEITRDIPNVGEDALKDIDERGIIRIGAEVRSGDILVG 860 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV++F R D Sbjct: 861 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRENGD 915 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 163/414 (39%), Positives = 212/414 (51%), Gaps = 72/414 (17%) Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 DE+ I+ R +IL G+ G L + E R Sbjct: 841 DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR-------------- 886 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 E K+ + GD++ PGV ++V+ ++A KR I GDKMAG Sbjct: 887 ---EVRDTSLRVPHGEAGIIVDVKVFTRENGDELSPGVNKLVRCYIAQKRKISVGDKMAG 943 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E HLG A LG + Sbjct: 944 RHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGLAASKLGWHV 1003 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D +I T ++D Sbjct: 1004 ATPVFDGATEPEIVECLEKAGYEGDGK----------------------------TVLYD 1035 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G TGEPFD VTVGY+Y+LKL H+V DK++ARST Sbjct: 1036 G--------------------------RTGEPFDNRVTVGYMYILKLAHLVDDKIHARST 1069 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDVVGR + YE+I Sbjct: 1070 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAI 1129 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCELK 1386 V G + E G PESF VL+KE+QAL L + + N + A +E+ D + EL+ Sbjct: 1130 VKGENIPEPGVPESFKVLIKELQALCLDVKVLNDDNEEIAI-KELADDDMVELE 1182 >gi|323353633|ref|ZP_08088166.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis VMC66] gi|322121579|gb|EFX93342.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis VMC66] gi|325697739|gb|EGD39623.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK160] Length = 1188 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 582/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTNTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EIL F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEILDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLEARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLSVKTRLLNQTIAEPLVDAETGEILVEAGTVMTRSVIDSIAEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D L ++V+ P D Sbjct: 330 GLNKITYIPN----DSAVLTDPVELQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRIVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+E G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEKGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y++ KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYQIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 168/507 (33%), Positives = 237/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|228478020|ref|ZP_04062631.1| DNA-directed RNA polymerase, beta subunit [Streptococcus salivarius SK126] gi|228250200|gb|EEK09453.1| DNA-directed RNA polymerase, beta subunit [Streptococcus salivarius SK126] Length = 1193 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 426/963 (44%), Positives = 589/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKEFL----------DTGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPADSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L G +AE++V+ ETGEI +EAG + ++ I D+ Sbjct: 278 YKVNKKLNIKTRLLGQTIAENLVDPETGEILVEAGTEMTRDVIDSIAEYLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVAPNDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTTADILAEMSYFLNLAEGIGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV KVTN+VV+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGKVTNEVVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEYPSHLVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVVYSDADKVEVRREDGSLD-------VYTIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMEGGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EEFE RDTKLGPEEITR++PNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEFESETRDTKLGPEEITRELPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 169/508 (33%), Positives = 237/508 (46%), Gaps = 79/508 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + +G M + + A + + D + V V Sbjct: 725 LVKVGDIVEKGDFIADGPSMEG-GEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER------EQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 + + + E E +D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITRELPNVGEEALKDL-DEMGIIRIGAEVKEGDILVGKV 842 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K L + + R +V+ + + + Sbjct: 843 TPKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV----- 886 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L D Sbjct: 887 -KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPD 945 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 946 GTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM 1005 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 + ++L G Sbjct: 1006 -----------------------------------------DSDAKTIL------YDG-- 1016 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1017 -----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRF 1071 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGA+ +LQE+LT KSDDV GR + YE+I G + G PESF VLVKE+ Sbjct: 1072 GEMEVWALEAYGASNILQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKEL 1131 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNK 1382 Q+LGL + + + + + Sbjct: 1132 QSLGLDMRVLDEDDYEVELRDLDEGEDD 1159 >gi|306832583|ref|ZP_07465722.1| DNA-directed RNA polymerase subunit beta [Streptococcus bovis ATCC 700338] gi|304425191|gb|EFM28318.1| DNA-directed RNA polymerase subunit beta [Streptococcus bovis ATCC 700338] Length = 1190 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 425/963 (44%), Positives = 586/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DNGLREVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PIT F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPITNFTDTMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPADSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG V+ ++ I D+ Sbjct: 278 YKINKKLNVKTRLLNQTIAENLVDTETGEILVEAGTVMTRDVIDSIAEQLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVSPVDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D R + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKARALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+++ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSTYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRTTGVVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 600 HQGNNQEFPSNIVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++AK G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAKHDGRVVFSDAEKVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYN+ED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMEKGEMALGQNPIVAYMTWDGYNYEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1234), Expect = e-132, Method: Composition-based stats. Identities = 171/508 (33%), Positives = 236/508 (46%), Gaps = 79/508 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + D + V V Sbjct: 725 LVKVGDIVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWDGYNYEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQI----ELLARDKDDEQVILDRNIYSRLMEILCGQN 994 + + + E +I E +D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDL-DEMGIIRIGAEVKEGDILVGKV 842 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K L + + R +V+ + + + Sbjct: 843 TPKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV----- 886 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L D Sbjct: 887 -KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPD 945 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D + D+ Sbjct: 946 GTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGATSEDLWDTVREAGM 1005 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 T ++DG Sbjct: 1006 DSDAK----------------------------TVLYDG--------------------- 1016 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1017 -----RTGEPFDNRVSVGIMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRF 1071 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+ Sbjct: 1072 GEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKEL 1131 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNK 1382 Q+LGL + + + + + Sbjct: 1132 QSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|238922790|ref|YP_002936303.1| DNA-directed RNA polymerase subunit beta [Eubacterium rectale ATCC 33656] gi|238874462|gb|ACR74169.1| DNA-directed RNA polymerase subunit beta [Eubacterium rectale ATCC 33656] gi|291528829|emb|CBK94415.1| DNA-directed RNA polymerase subunit beta [Eubacterium rectale M104/1] Length = 1313 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 433/960 (45%), Positives = 592/960 (61%), Gaps = 64/960 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 +R + + E++ +P+LIEVQK SY FL +EGL+ AF + PIT +SG Sbjct: 13 KSMRMSYSRQKEVLQMPNLIEVQKDSYQWFL----------DEGLKEAFADISPITDYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 L+FV + D K+ + +C RD TYA PLK+ +RL K +I E Sbjct: 63 KLSLDFVDFTLCEDDVKYTIPECKERDATYAAPLKVKVRLH---------NKETDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++ + GK LY+C +IP++ Sbjct: 114 EIFMGDLPLMTETGTFVINGAERVIVSQLVRSPGIYYGIAHDKL---GKTLYSCTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T L ALG+ + + IL F KI S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLLRALGVGTNQAILDMFGDEPKIQASFSKDPA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQV-IESGKKLTSGLLKSLKEKGVKFLGITS---- 300 + I GE + +ES + L + + + + +G Sbjct: 231 ITEREPQGSYEAG-LLELYKKIRPGEPLSVESAESLITAMFFDPRRYDLAKVGRYKFNKK 289 Query: 301 ----DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 + + G +AED+V+ TGE+ EAG V+D +I ++ +P L++ + N Sbjct: 290 LALKNRISGQVLAEDVVDPSTGEVIAEAGTVVDRALATQIQNA---AVPALWIQTETRNV 346 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 I ++++ D + L D + V E ++ + + S R++ Sbjct: 347 KILSSMMVD-IRSWIPELE---------DPKSIGVTELVYYPVLAQILEEYDSLEDRIEA 396 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 R D +HI KEDI A I + L G GT DDID+LGNRR+R+VGE+L+NQYR Sbjct: 397 IKRDISDLI--PKHITKEDIFATINYNMHLEWGAGTDDDIDHLGNRRIRAVGELLQNQYR 454 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GL R+ER ++ER+++ D++ + PQ LIN KPV +AV EFF SSQLSQ + N L +T Sbjct: 455 IGLSRLERVVRERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELT 514 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YG Sbjct: 515 HKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPVETPEGPNIGLINSLACYARINEYG 574 Query: 597 FIETPYRKV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 F+E PYRK+ + VT +VVY++A EE+N ++AQAN LD +G F V R Sbjct: 575 FVEAPYRKIDKTDPKNPVVTEEVVYMTADEEDNYHVAQANEKLDAEGHFVRNSVSGRYRE 634 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E + D++D SPK V S+A +LIPFL+NDD R LMG NMQRQAVPLL EAP V Sbjct: 635 ETQEYDKSAFDYMDVSPKMVFSVATALIPFLQNDDPTRALMGSNMQRQAVPLLTTEAPVV 694 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E+ A SG +VAK G V ++ RI+I+ +G+ Y L KF RSN Sbjct: 695 GTGIETKAAVDSGVCVVAKADGEVLSSESNRIIIKETDGNKRE-------YILTKFSRSN 747 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 Q+ C NQRP+V GD+V+ D+IADGPST G+LALG+N L+ FM W GYN+ED++L+SE Sbjct: 748 QSNCYNQRPIVFKGDKVKAGDVIADGPSTSQGELALGKNPLIGFMTWEGYNYEDAVLLSE 807 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+V DV+TS+HIEE+EV +RDTKLGPEEITRD+P V ++ LK++DE GII VGAEV G Sbjct: 808 RLVEYDVYTSVHIEEYEVESRDTKLGPEEITRDVPGVGDDALKDLDERGIIRVGAEVRAG 867 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G +VD ++F R D Sbjct: 868 DILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAYGIIVDAKVFTRENGD 927 Score = 542 bits (1397), Expect = e-151, Method: Composition-based stats. Identities = 249/1051 (23%), Positives = 415/1051 (39%), Gaps = 70/1051 (6%) Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 + LL++Y+ +RPG+ + AES+ +FFD +YDL+ VGR K N +L L Sbjct: 239 SYEAGLLELYKKIRPGEPLSVESAESLITAMFFDPRRYDLAKVGRYKFNKKLALKNRISG 298 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + + ++ + ++ + L + + L Q +++ S+ Sbjct: 299 QVLAEDVVDPSTGEVIA----EAGTVVDRALATQIQNAAVPALWIQTETRNVKILSSMMV 354 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH--TRRLSALGQ 546 I S + P+ + + V V L+Q+ E +SL R +S L Sbjct: 355 DIRSWIPELEDPKSIGVTELVYYPV--------LAQILEEYDSLEDRIEAIKRDISDLIP 406 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 + + + +G + N + ++ + + R V Sbjct: 407 KHITKEDIFATINYNMHLEWGAGTDDDIDHLGN-RRIRAVGELLQNQYRIGLSRLERVVR 465 Query: 607 DGKVTNDVVYLSAMEEENRYIAQANSS----------LDEDGSFTEELVFCRC------- 649 + T D+ +S N A + + EL R Sbjct: 466 ERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSALGPG 525 Query: 650 --AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM-GCNMQRQAVPLLKA 706 + + + + V L N + + + Sbjct: 526 GLSRDRAGFEVRDVHYTHYGRMCPVETPEGPNIGLINSLACYARINEYGFVEAPYRKIDK 585 Query: 707 EAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMK 766 P E VV ++ A E++DA +R+ Y Sbjct: 586 TDPKNPVVTEEVVYMTADEEDNYHVAQANEKLDAEGHFVRN--SVSGRYREETQEYDKSA 643 Query: 767 FQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDS 826 F + + + + ++ +D +++ A+ A + G + + Sbjct: 644 FDYMDVSPKMVFSVATALIPFLQNDDPTRALMGSNMQRQAVPLLTTEAPVVGTGIETKAA 703 Query: 827 MLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGA 886 + +V++ + E ++ ++T E ++ I+ G Sbjct: 704 VDSGVCVVAKADGEVLSSESNRIIIKETDGNKREYI-LTKFSRSNQSNCYNQRPIVFKGD 762 Query: 887 EVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFN 946 +V GD++ + + + + L + + D L V V Sbjct: 763 KVKAGDVIADGPST-SQGELALGKNPLIGFMTWEGYNYEDAVLLSERLVEYDVYTSVHIE 821 Query: 947 RHGIDKNERSISVEREQIE------LLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 + ++ + + E + +D DE+ I+ R +IL G+ G Sbjct: 822 EYEVESRDTKLGPEEITRDVPGVGDDALKDL-DERGIIRVGAEVRAGDILVGKVTPKGET 880 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 L + E R E + K+ Sbjct: 881 ELTAEERLLRAIFGEKAR-----------------EVRDTSLKVPHGAYGIIVDAKVFTR 923 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 + GD++ PGV + V++++A KR I GDKMAGRHGNKG+VSR+LP EDMPFL +G P+DI Sbjct: 924 ENGDELSPGVNQSVRIYIAQKRKISVGDKMAGRHGNKGVVSRVLPVEDMPFLPNGRPLDI 983 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQ+ E HL A LG I + + D DI + Sbjct: 984 VLNPLGVPSRMNIGQVLEIHLSLAAKALGFNISTPVFDGANEVDIEDTLELANDYVNLPF 1043 Query: 1181 HTEKISDYDDDSVLRVAEQWK--SGVPVSTPVFDG----ADEEAINSMLRMADLDESGQS 1234 E++ + + V T D + A S+ + + + G+ Sbjct: 1044 DKEELEKDLQAEHPYWSADAEIFYDKYVDTLREDVMEYLSTNRAHRSLWKGVPISKDGKV 1103 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 L DG TGE FD T+G+++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1104 QLRDGRTGECFDGKTTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRF 1163 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+I+ G + E G PESF VL+KE+ Sbjct: 1164 GEMEVWALEAYGAAYTLQEILTMKSDDVVGRVKTYEAIIKGENIPEPGIPESFKVLLKEL 1223 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 QALGL + + + + +E ++ ++ Sbjct: 1224 QALGLDVKVLDENREEVELIET-SEYGNTDI 1253 >gi|210623170|ref|ZP_03293620.1| hypothetical protein CLOHIR_01570 [Clostridium hiranonis DSM 13275] gi|210153783|gb|EEA84789.1| hypothetical protein CLOHIR_01570 [Clostridium hiranonis DSM 13275] Length = 1241 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 442/955 (46%), Positives = 600/955 (62%), Gaps = 65/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K EI D+P+LIE+Q SY FL EGL+ F + PI ++G Sbjct: 13 KRKRMSFSKIKEIADVPNLIEIQVDSYKWFL----------EEGLKEVFDDISPIEDYTG 62 Query: 71 AAMLEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEFV Y D PK+D+++C RD TY PLK+ +RLI K +IKEQ Sbjct: 63 NLILEFVDYSLDENPKYDIEECKERDATYCAPLKVKVRLI---------NKETGEIKEQE 113 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 ++MGD PLMT+ GTFVI G +R++VSQL RSP +++ ++ + GK L + +IP++G Sbjct: 114 VFMGDFPLMTERGTFVINGAERVIVSQLVRSPSVYYAEERDKT---GKRLISSTVIPNRG 170 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ E DS D+I VR+DR RK PVT L ALG+ S+ EI+ S + Sbjct: 171 AWLEYETDSNDVISVRVDRTRKQPVTVLLRALGIGSDAEIIELLGEDERLSATLEKDNTN 230 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD------ 301 L+ K + GE +ES L + L K + +G Sbjct: 231 TVEEGLIEIYK------KLRPGEPPTVESASSLINALFFDPKRYDLAKVGRYKFNKKLAI 284 Query: 302 --CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + A DIVN ETGE++++AG+ I ++I ++ I + +L D Sbjct: 285 CYRIMNRVAARDIVNPETGEVFVKAGETIGYNVAKDIQNAGINVVHLLVDDEKEIKVIGN 344 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 N + + + + + L I + + L D YD + + R Sbjct: 345 NFVDIEAHVNFDISDLKIKEKVH-------------YPTLKEILDNYDDEEEIKEAIKSR 391 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 + P +HI +DIIA I +L G GTIDDID+LGNRR+RSVGE+L+NQ R+GL Sbjct: 392 MKELIP---KHILLDDIIASISYEFNLFYGVGTIDDIDHLGNRRIRSVGELLQNQVRIGL 448 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RMER IKER++ D++S+ PQ L+N +PV +A+ EFF SSQLSQ + N LS +TH R Sbjct: 449 SRMERVIKERMTVQDMESITPQALVNIRPVSAAIKEFFGSSQLSQFMDQTNPLSELTHKR 508 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A+VN YGFIE Sbjct: 509 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLGTYAKVNEYGFIE 568 Query: 600 TPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILV 656 +PYRK +VTN++ YL+A EE+ AQAN L EDG F + CR G L+ Sbjct: 569 SPYRKYDKETGRVTNEIHYLTADEEDLFVRAQANEPLTEDGEFINNRIACRTVNGALELL 628 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 +K+D++D SPKQVVS+A ++IPFLENDD+NR LMG NMQRQAVPL++ EAP +GTG+E Sbjct: 629 SSDKVDYMDISPKQVVSVATAMIPFLENDDANRALMGSNMQRQAVPLVRREAPIIGTGIE 688 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 AK SGA +VAK G+V++V A I+I+ +G D Y+L+KF+RSN TC+ Sbjct: 689 YRAAKDSGAVVVAKNGGVVDRVSADEIIIKKEDGTKDK-------YKLLKFKRSNAGTCI 741 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQ P+V G+E++ D+IADGP+TDLG++ALGRN +AFM W GYN+ED++LI+ER+V E Sbjct: 742 NQTPIVSKGEEIKAGDVIADGPATDLGEIALGRNCFIAFMTWEGYNYEDAVLINERLVRE 801 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D ++IHIEE+E ARDTKLGPEEITRDIPNV E +KN+D+ GII +GAEV+ GDILVG Sbjct: 802 DRLSTIHIEEYECEARDTKLGPEEITRDIPNVGESAIKNLDDRGIIRIGAEVDSGDILVG 861 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G SG +VDV++F R D Sbjct: 862 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTRENGD 916 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 254/1175 (21%), Positives = 422/1175 (35%), Gaps = 117/1175 (9%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + I+ E+VI S + + + + Sbjct: 98 KVRLINKETGEIKEQEVFMGDFPLMTERGTFVINGAERVIVSQLVRSPSVYYAEERDKTG 157 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 I+S + + I + + + I + ++ + Sbjct: 158 KRLISSTVIPNRGAWLEYETDSNDVISVRVDRTRKQPVTVLLRALGIGSDAEI-IELLGE 216 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 + + TL D ++ L++IY+ +RPG+ T A S+ N LFFD +YDL+ VGR Sbjct: 217 DERLSATLEKDNTNTVEEGLIEIYKKLRPGEPPTVESASSLINALFFDPKRYDLAKVGRY 276 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 K N +L + R + +V+ G+ + + +G + + N Sbjct: 277 KFNKKLAICYRIMNRV--------AARDIVNPETGEVFVKAGETIGYNVAKDIQNAGINV 328 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 L + E+ IK ++ V + +N + E L ++ ++ + Sbjct: 329 VHLLVDD-EKEIKVIGNNF----VDIEAHVNFDISDLKIKEKVHYPTLKEILDNYDDEEE 383 Query: 535 ITH--TRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARV 592 I R+ L + + YG + N + S+ + Sbjct: 384 IKEAIKSRMKELIPKHILLDDIIASISYEFNLFYGVGTIDDIDHLGN-RRIRSVGELLQN 442 Query: 593 NAYGFIETPYRKVCDGKVTNDVVYLS------------AMEEE-------NRYIAQANSS 633 + R + + D+ ++ A++E S Sbjct: 443 QVRIGLSRMERVIKERMTVQDMESITPQALVNIRPVSAAIKEFFGSSQLSQFMDQTNPLS 502 Query: 634 LDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLM 692 L + E + + I + + + + Sbjct: 503 ELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLGTYAKVN 562 Query: 693 GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVA---KRAGIVEQVDAIRIVIRSVE 749 E V + + A + A + + RI R+V Sbjct: 563 EYGFIESPYRKYDKETGRVTNEIHYLTADEEDLFVRAQANEPLTEDGEFINNRIACRTVN 622 Query: 750 GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGR 809 G L+ +S Y + Q V + A+ Sbjct: 623 GALELLSSDKVDY---------MDISPKQVVSVATAMIPFLENDDANRALMGSNMQRQAV 673 Query: 810 NMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNV 868 ++ P G E S +V + + + + G ++ + + Sbjct: 674 PLVRREAPIIGTGIEYRAAKDSGAVVVAKNGGVVDRVSADEIIIKKEDGTKDKYKLLKFK 733 Query: 869 SEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTS 928 I++ I+ G E+ GD++ + A + + D Sbjct: 734 RSNAGTCINQTPIVSKGEEIKAGDVIADGPATDL-GEIALGRNCFIAFMTWEGYNYEDAV 792 Query: 929 LRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLME 988 L V + R+ H + + + E + RD + +N+ R Sbjct: 793 LIN----ERLVREDRLSTIHIEEYECEARDT-KLGPEEITRDIPNVGESAIKNLDDR-GI 846 Query: 989 ILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSI 1048 I G SG K T ++ R F + +V+ + Sbjct: 847 IRIGAEVDSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVD 906 Query: 1049 LEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCED 1108 + K+ + GDD+ PGV +V+ ++A KR I+ GDKMAGRHGNKG++SR+LP ED Sbjct: 907 V------KVFTRENGDDLSPGVNELVRCYIAKKRKIKVGDKMAGRHGNKGVISRVLPEED 960 Query: 1109 MPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPL 1168 MPF++DGTP+DIVLNP GVPSRMN+GQ+ E HLG A LG + + + D DI Sbjct: 961 MPFMEDGTPMDIVLNPQGVPSRMNIGQVLEVHLGLAAKKLGWYVATSVFDGANEYDIMDA 1020 Query: 1169 RSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADL 1228 Sbjct: 1021 LEEAGYPRDGKLTL---------------------------------------------- 1034 Query: 1229 DESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 G++ G+ FD +TVGY+Y LKL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1035 -YDGRT-------GDSFDNRITVGYMYYLKLHHLVDDKLHARSTGPYSLVTQQPLGGKAQ 1086 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++AYGAA++LQE+LT+KSDDVVGR R YE+IV G + E G PESF Sbjct: 1087 FGGQRFGEMEVWALEAYGAAHILQEILTVKSDDVVGRVRTYEAIVKGENIPEPGIPESFK 1146 Query: 1349 VLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKC 1383 VL+KE+Q+L L + + + + E + + Sbjct: 1147 VLIKELQSLCLDVKVLTAEDQEIEVKESVDYEDDG 1181 >gi|322374094|ref|ZP_08048628.1| DNA-directed RNA polymerase, beta subunit [Streptococcus sp. C150] gi|321277060|gb|EFX54131.1| DNA-directed RNA polymerase, beta subunit [Streptococcus sp. C150] Length = 1193 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 427/963 (44%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DTGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE +S + L + + +G Sbjct: 219 NTVEKDI-HKNPADSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L G +AE++V+ ETGEI +EAG + ++ I D+ Sbjct: 278 YKVNKKLNIKTRLLGQTIAENLVDPETGEILVEAGTEMTRDVIDSIAEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVAPNDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTTADILAEMSYFLNLAEGIGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV KVTN+VV+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGKVTNEVVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 600 HQGNNQEYPSHLVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPRA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PFVGTGMEYQAAHDSGAAVIAQHDGKVVYSDADKVEVRREDGSLD-------VYTVQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMEGGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EEFE RDTKLGPEEITR++PNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEFESETRDTKLGPEEITRELPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 175/508 (34%), Positives = 243/508 (47%), Gaps = 79/508 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + +G M + + A + + D + V V Sbjct: 725 LVKVGDIVEKGDFIADGPSMEG-GEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER------EQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 + + + E E +D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITRELPNVGEEALKDL-DEMGIIRIGAEVKEGDILVGKV 842 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K L + + R +V+ + + + Sbjct: 843 TPKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV----- 886 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L D Sbjct: 887 -KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPD 945 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 946 GTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLW-------- 997 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 D E +D ++ Sbjct: 998 -------------------------------------DTVREA---------GMDSDAKT 1011 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 ILYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1012 ILYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRF 1071 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGA+ +LQE+LT KSDDV GR + YE+I G + G PESF VLVKE+ Sbjct: 1072 GEMEVWALEAYGASNILQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKEL 1131 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNK 1382 Q+LGL + + + + + Sbjct: 1132 QSLGLDMRVLDEDDHEVELRDLDEGEDD 1159 >gi|55821840|ref|YP_140282.1| DNA-directed RNA polymerase subunit beta [Streptococcus thermophilus LMG 18311] gi|55823756|ref|YP_142197.1| DNA-directed RNA polymerase subunit beta [Streptococcus thermophilus CNRZ1066] gi|81558888|sp|Q5LXV3|RPOB_STRT1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|81560075|sp|Q5M2F5|RPOB_STRT2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|55737825|gb|AAV61467.1| DNA-directed RNA polymerase beta subunit [Streptococcus thermophilus LMG 18311] gi|55739741|gb|AAV63382.1| DNA-directed RNA polymerase beta subunit [Streptococcus thermophilus CNRZ1066] gi|312279182|gb|ADQ63839.1| DNA-directed RNA polymerase subunit beta [Streptococcus thermophilus ND03] Length = 1193 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 430/963 (44%), Positives = 591/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++ +P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLGLPNLIEIQTDSFKEFL----------DTGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPADSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L G +AE++V+ ETGEI +EAG + ++ I D+ Sbjct: 278 YKLNKKLNIKTRLLGQTIAENLVDPETGEILVEAGTEMTRDVIDSIAEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVAPNDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRRVR+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTTADILAEMSYFLNLAEGIGKVDDIDHLGNRRVRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D +++ PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEALTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+++ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSTYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFI+TPYRKV KVTN+VV+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 RLNKYGFIQTPYRKVDRATGKVTNEVVWLTADEEDEYIVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPSHLVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTGME A SGAA++AK G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PFVGTGMEYQAAHDSGAAVIAKHDGKVVYSDADKVEVRREDGSLD-------VYTIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMEGGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EEFE RDTKLGPEEITR++PNVSEE LKN+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEFESETRDTKLGPEEITRELPNVSEEALKNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 175/507 (34%), Positives = 242/507 (47%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + +G M + + A + + D + V V Sbjct: 725 LVKVGDIVEKGDFIADGPSMEG-GEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVEREQIE-----LLARDKDDEQVILDRNIYSRLMEILCGQNA 995 + + + E E A DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITRELPNVSEEALKNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIYIATPVFDGASSEDLW--------- 997 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D E +D ++I Sbjct: 998 ------------------------------------DTVREA---------GMDSDAKTI 1012 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1013 LYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ +LQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNILQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDYEVELRDLDEGEDD 1159 >gi|225412293|ref|ZP_03761482.1| hypothetical protein CLOSTASPAR_05515 [Clostridium asparagiforme DSM 15981] gi|225042170|gb|EEG52416.1| hypothetical protein CLOSTASPAR_05515 [Clostridium asparagiforme DSM 15981] Length = 1080 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 437/951 (45%), Positives = 592/951 (62%), Gaps = 59/951 (6%) Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAML 74 + + E++++P+LIE+QK SY FL EGL+ AF + PI F+G L Sbjct: 1 MSYSRQKEVLEMPNLIEIQKDSYQWFL----------KEGLKEAFDDISPIADFAGHLSL 50 Query: 75 EFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYM 132 EFV + D K+ +++C RD TYA PLK+ +RL D D ++ E I+M Sbjct: 51 EFVDFTLCKDDVKYTIEECKERDATYAAPLKVKVRLYNKDKD---------EMNEHEIFM 101 Query: 133 GDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWM 192 GDLPLMT G+FVI G +R++VSQL RSPGI++ + GK L+ C +IP++G W+ Sbjct: 102 GDLPLMTDTGSFVINGAERVIVSQLVRSPGIYYGIGHDKV---GKELFTCTVIPNRGAWL 158 Query: 193 DIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFWCFPL 249 + E DS D+ +VR+DR RKVPVT + ALG + EIL F K++ S D Sbjct: 159 EYETDSNDVFYVRVDRTRKVPVTVLVRALGYGTNAEILDLFGEEPKLLASFGKDTSDNYQ 218 Query: 250 SAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCLCGLY 307 + + +D+ E ++ S L K + K K L + L G Sbjct: 219 DGLLELYKKIRPGEPLSVDSAESLLNSMFFDPRRYDLAKVGRYKFNKKLSF-KNRLNGQT 277 Query: 308 VAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 +AED+V+ TGEI EAG +D+ EI ++ +P ++VD N + + ++ D Sbjct: 278 LAEDVVDTTTGEILAEAGTKVDKNKAAEIQNA---AVPFVWVDGPNRKQKVLSNMMVD-- 332 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 L Y P +V + + + ++ T + L + D Sbjct: 333 -------LAAYVSFDPEEV----GVTELVYYPALSAILAEVGTDDTEALKEALRKNIHDL 381 Query: 428 V-RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI 486 + +HI KEDIIA I + L G DDID+LGNRR+R+VGE+L+NQYR+GL RMER + Sbjct: 382 IPKHITKEDIIASINYNMHLEEEVGNADDIDHLGNRRIRAVGELLQNQYRIGLSRMERVV 441 Query: 487 KERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQ 546 +ER+++ D+D + PQ LIN KPV +AV EFF SSQLSQ + N L+ +TH RRLSALG Sbjct: 442 RERMTTQDMDGITPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLAELTHKRRLSALGP 501 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL ++ARVN YGFIE PYR V Sbjct: 502 GGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLINSLATYARVNQYGFIEAPYRVVD 561 Query: 607 ------DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 + +VT++VVYL+A EE+N +AQAN +LDEDG F V R E ++ Sbjct: 562 KTTDPANPRVTDEVVYLTADEEDNFVVAQANEALDEDGHFVHNNVSGRFRTETSEFQKKT 621 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ID +D SPK V S+A ++IPFLENDD+NR LMG NMQRQAVPLL EAP VGTG+E A Sbjct: 622 IDLMDVSPKMVFSVATAMIPFLENDDANRALMGSNMQRQAVPLLTTEAPAVGTGIEGKAA 681 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG ++A+ AG+V + + I+I+ S D+Y L KF+RSNQ+ C NQ+P Sbjct: 682 VDSGVCVLARNAGVVTRSASNEIIIKRD------SDGNKDVYHLTKFKRSNQSNCYNQKP 735 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V GD V ++IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V EDV+T Sbjct: 736 IVYKGDHVEAGEVIADGPSTSQGEIALGKNPLIGFMTWEGYNYEDAVLLSERLVQEDVYT 795 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE+E ARDTKLGPEEITRD+P V E+ LK++DE GII +GAEV GDILVGK+TP Sbjct: 796 SIHIEEYEAEARDTKLGPEEITRDVPGVGEDALKDLDERGIIRIGAEVRAGDILVGKVTP 855 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G +VD ++F R D Sbjct: 856 KGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAYGIIVDAKVFTRENGD 906 Score = 237 bits (604), Expect = 1e-59, Method: Composition-based stats. Identities = 110/461 (23%), Positives = 168/461 (36%), Gaps = 41/461 (8%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV--SEDVFTSIHIEEFEVMARDTKLG 857 +L P G E + + + + E++ + G Sbjct: 653 MGSNMQRQAVPLLTTEAPAVGTGIEGKAAVDSGVCVLARNAGVVTRSASNEIIIKRDSDG 712 Query: 858 PEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIF 917 +++ ++ I+ G V G+++ + + + + L Sbjct: 713 NKDVYHLTKFKRSNQSNCYNQKPIVYKGDHVEAGEVIADGPST-SQGEIALGKNPLIGFM 771 Query: 918 GEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI------ELLARDK 971 + + D L V V + + + + E E +D Sbjct: 772 TWEGYNYEDAVLLSERLVQEDVYTSIHIEEYEAEARDTKLGPEEITRDVPGVGEDALKDL 831 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ R +IL G+ G L + E R Sbjct: 832 -DERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR------------- 877 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E + K+ + GD++ PGV V++++A KR I GDKMA Sbjct: 878 ----EVRDTSLKVPHGAYGIIVDAKVFTRENGDELAPGVNETVRIYIAQKRKISVGDKMA 933 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG Sbjct: 934 GRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFN 993 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 + + I D DI S E + Y D V + S + Sbjct: 994 VSTPIFDGANENDIQDTLELAND-YVNLSWEEFETKYKDLIRPEVMDYLGSNL------- 1045 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 + + + G+ L DG TGE FD VT+G Sbjct: 1046 ------EHRELWKGVPISRDGKVRLRDGRTGEFFDGSVTIG 1080 >gi|283798887|ref|ZP_06348040.1| DNA-directed RNA polymerase, beta subunit [Clostridium sp. M62/1] gi|291073346|gb|EFE10710.1| DNA-directed RNA polymerase, beta subunit [Clostridium sp. M62/1] gi|295092651|emb|CBK78758.1| DNA-directed RNA polymerase subunit beta [Clostridium cf. saccharolyticum K10] Length = 1289 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 431/953 (45%), Positives = 587/953 (61%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 +R F + E++++P+LIE+QK SY FL +EGL+ F + PI F+G Sbjct: 13 KGIRMSFSRQKEVLEMPNLIEIQKNSYQWFL----------DEGLREVFDDISPIADFAG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL D D +I E Sbjct: 63 HLSLEFVDFTLCKDDIKYTIEECKERDATYAAPLKVKVRLCNKDKD---------EINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT G+FVI G +R++VSQL RSPGI++ + G LY+C +IP++ Sbjct: 114 EIFMGDLPLMTDTGSFVINGAERVIVSQLVRSPGIYYGIGHDKI---GTELYSCTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVY--SQRGDFW 245 G W++ E DS DI +VR+DR RKVPVT + ALG + EI+ F ++ S D Sbjct: 171 GAWLEYETDSNDIFYVRVDRTRKVPVTVLIRALGYGTNAEIIDLFGDELKLEKSFEKDTS 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E ++ S L K + K K L + + Sbjct: 231 DNYQDGLLELYKKIRPGEPLSVDSAESLLNSMFFDPRRYDLAKVGRYKFNKKL-HFKNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED+V+ TGEI E G V+D++ +I ++ +P +++ N + + ++ Sbjct: 290 AGHTLAEDVVDMSTGEILAEKGTVVDKELATKIQNA---AVPFVWIAGEKKNHKVLSNMM 346 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D D + V E +F + + + Sbjct: 347 VDLAAYV------------SFDPAEIGVTELVFYPVLENILAENDGKGEDELKEAIRKNI 394 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDIIA I + L G GT DDID+LGNRR+R+VGE+L+NQYR+GL RME Sbjct: 395 HELIPKHITKEDIIASINYNMHLEGGIGTPDDIDHLGNRRIRAVGELLQNQYRIGLSRME 454 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D++++ PQ LIN KPV +AV EFF SSQLSQ + N LS +TH RRLSA Sbjct: 455 RVVRERMTTQDMENISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLSELTHKRRLSA 514 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL ++ARVN YGF+E PYR Sbjct: 515 LGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLINSLATYARVNQYGFVEAPYR 574 Query: 604 KVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 V + VT++VVYL+A EE+N +AQAN LDE+G F V R E + Sbjct: 575 VVDKTDPSNPVVTDEVVYLTADEEDNFVVAQANEPLDEEGHFVHNNVSGRFREETSEFQK 634 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +ID +D SPK V S+A S+IPFL+NDD+NR LMG NMQRQAVPLL EAP VGTG+E Sbjct: 635 RRIDLMDVSPKMVFSVATSMIPFLQNDDANRALMGSNMQRQAVPLLTTEAPAVGTGIEGK 694 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG ++AK AG+VE+ + I+++ S D+YRL KF RSNQ+ C NQ Sbjct: 695 AAVDSGVCVLAKNAGVVERSASNEIIVKRD------SDGQKDVYRLTKFTRSNQSNCYNQ 748 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 +P+V GD V ++IADG ST G++ALG+N L+ FM W GYN+ED++L+SER+V EDV Sbjct: 749 KPIVYKGDHVEAGEVIADGASTCNGEIALGKNPLIGFMTWEGYNYEDAVLLSERLVQEDV 808 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRD+P V E+ LK++DE GII +GAEV GDILVGK+ Sbjct: 809 YTSVHIEEYEAEARDTKLGPEEITRDVPGVGEDALKDLDERGIIRIGAEVRAGDILVGKV 868 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G +VD ++F R D Sbjct: 869 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAYGIIVDAKVFTRENGD 921 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 180/547 (32%), Positives = 259/547 (47%), Gaps = 44/547 (8%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E++ + G +++ R ++ I+ G V G+++ + + Sbjct: 718 EIIVKRDSDGQKDVYRLTKFTRSNQSNCYNQKPIVYKGDHVEAGEVIADGAST-CNGEIA 776 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI--- 964 + L + + D L V V + + + + E Sbjct: 777 LGKNPLIGFMTWEGYNYEDAVLLSERLVQEDVYTSVHIEEYEAEARDTKLGPEEITRDVP 836 Query: 965 ---ELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E +D DE+ I+ R +IL G+ G L + E R Sbjct: 837 GVGEDALKDL-DERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR--- 892 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 E + K+ + GD++ PGV V++++A K Sbjct: 893 --------------EVRDTSLKVPHGAYGIIVDAKVFTRENGDELSPGVNETVRIYIAQK 938 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R I GDKMAGRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL Sbjct: 939 RKISVGDKMAGRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHL 998 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT--GSHTEKISDYDDDSVLRVAEQ 1199 A LG + + I D DI+ + T K D D+ V+ Sbjct: 999 SLAAKALGFNVSTPIFDGANENDIADTLEMANDYVNTSWEEFEAKYKDKVDEGVMEYLG- 1057 Query: 1200 WKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKL 1259 + + + G+ L DG TGE FD PVT+G+++ LKL Sbjct: 1058 ---------------SHLEHRKLWKGVPISRDGKVRLRDGRTGEFFDSPVTIGHMHYLKL 1102 Query: 1260 NHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKS 1319 +H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KS Sbjct: 1103 HHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKS 1162 Query: 1320 DDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 DDVVGR + YE+I+ G + E G PESF VL+KE+Q+LGL + + E I D Sbjct: 1163 DDVVGRVKTYEAIIKGENIPEPGVPESFKVLLKELQSLGLDVRVLREDGSEVELSENI-D 1221 Query: 1380 FNKCELK 1386 + +++ Sbjct: 1222 YGDTDIR 1228 >gi|168181856|ref|ZP_02616520.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum Bf] gi|237796950|ref|YP_002864502.1| DNA-directed RNA polymerase subunit beta [Clostridium botulinum Ba4 str. 657] gi|259494176|sp|C3KVQ9|RPOB_CLOB6 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|182674872|gb|EDT86833.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum Bf] gi|229262928|gb|ACQ53961.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum Ba4 str. 657] Length = 1241 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 439/951 (46%), Positives = 600/951 (63%), Gaps = 57/951 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F + E+ +P+LIEVQ SYD FL EGLQ F + PI ++G Sbjct: 9 KRTRMSFSRLKEVGQMPNLIEVQLDSYDWFL----------KEGLQEVFDDINPIQDYTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV Y+ D K+ V++C RD TYA PLK+ +RL+ K +IKEQ Sbjct: 59 NLNLEFVGYKLDLDSIKYSVEECKERDSTYAAPLKVKVRLL---------NKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++D + G L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDMTVDKT---GSKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS--QRGDFW 245 G W++ E DS +II+VRID+ RK+P+T ALG ++ EI+ F D Sbjct: 167 GAWLEYETDSNNIIYVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATIEKDNT 226 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 A + +D+ E +IES L + + K K L I + Sbjct: 227 KTREEALLEIYKRLRPGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNKKLAIHL-RI 285 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 +DIVN +TGEI ++ G+ ID+ EI + I ++ I D + I N V Sbjct: 286 TNQIADQDIVNPQTGEILVQKGEKIDKDKAIEIQNCGINEVYIKIDD--KSFKVIGNHFV 343 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL-FFDSDKYDLSTVGRVKMNMRLNL 422 + + D+S ++ E +F + D Y + ++ + Sbjct: 344 DIHS-------------LISFDISDLNIKEYVFYPVLKEILDNYADEESIKEEIRKNIYR 390 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 P +HI +EDI A I + L G DDID+LGNRR+RSVGE+L+NQ+R+GL RM Sbjct: 391 LIP---KHIIREDIYATINYELGLSYDIGYKDDIDHLGNRRLRSVGELLQNQFRIGLSRM 447 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER +KER++ D + + PQ LIN +PV +++ EFF SSQLSQ + N LS +TH RRLS Sbjct: 448 ERVVKERMTIQDQEVITPQALINIRPVAASIKEFFGSSQLSQFMDQTNPLSELTHKRRLS 507 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +FA+VN YGFIETPY Sbjct: 508 ALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFAKVNEYGFIETPY 567 Query: 603 RKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 R++ + + TND+VY++A EE+ IA+++ +DE+G F ++ V R E ++VP + Sbjct: 568 RRIDPKNKRATNDIVYMTADEEDLYVIARSDEPIDENGYFIDDKVTVRAKEEVLVVPVSE 627 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++++D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E A Sbjct: 628 VEYMDISPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEYKAA 687 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG AK AG V V A I +R S G+D Y+L+KF+RSNQ TC+NQRP Sbjct: 688 TDSGVLPKAKNAGTVAYVSADEIRVRRD------SDGGIDKYKLLKFKRSNQGTCINQRP 741 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V G+ V + ++ADGPSTDLG++ALG+N+L+ F+ W GYN+ED+MLISE++V EDVFT Sbjct: 742 IVSKGEVVAKETLLADGPSTDLGEIALGKNILMGFITWEGYNYEDAMLISEQLVREDVFT 801 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE+E ARDTKLGPEEITRDIPNV EE LK+IDE GII +GAEV GDILVGK+TP Sbjct: 802 SIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDERGIIRIGAEVRSGDILVGKVTP 861 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV+IF R D Sbjct: 862 KGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKIFTRENGD 912 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 188/544 (34%), Positives = 253/544 (46%), Gaps = 78/544 (14%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E+ R G + + + I++ I+ G V +L + Sbjct: 709 EIRVRRDSDGGIDKYKLLKFKRSNQGTCINQRPIVSKGEVVAKETLLADGPSTDLGEIAL 768 Query: 908 PEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + L+ I E A+ + + +R S + + R E Sbjct: 769 GKNILMGFITWEGYNYEDAMLISEQLVREDVFTSIHIEEYEAEARDTKLGPEEITRDIPN 828 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E +D DE+ I+ R +IL G+ G L + E R Sbjct: 829 VGEEALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR---- 883 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 E KI + GD++PPGV ++V+ ++A KR Sbjct: 884 -------------EVRDTSLRVPHGEAGIIVDVKIFTRENGDELPPGVNKLVRCYIAQKR 930 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E HLG Sbjct: 931 KISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLG 990 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG I + + D DI Sbjct: 991 LAASKLGWHIATPVFDGAIESDIVDCLRKA------------------------------ 1020 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G E+ G+++LYDG TGEPFD VTVGY+Y+LKL H+ Sbjct: 1021 ----------GYSED--------------GKTVLYDGRTGEPFDNRVTVGYMYILKLAHL 1056 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDV Sbjct: 1057 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDV 1116 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 VGR + YE+IV G + E G PESF VL+KE+QAL L + + N + E + D + Sbjct: 1117 VGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDDNQEIKLKESV-DEDA 1175 Query: 1383 CELK 1386 EL+ Sbjct: 1176 DELE 1179 >gi|116628547|ref|YP_821166.1| DNA-directed RNA polymerase subunit beta [Streptococcus thermophilus LMD-9] gi|122266858|sp|Q03IK2|RPOB_STRTD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|116101824|gb|ABJ66970.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Streptococcus thermophilus LMD-9] Length = 1193 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 429/963 (44%), Positives = 591/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++ +P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLGLPNLIEIQTDSFKEFL----------DTGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPADSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L G +AE++V+ ETGEI +EAG + ++ I D+ Sbjct: 278 YKLNKKLNIKTRLLGQTIAENLVDPETGEILVEAGTEMTRDVIDSIAEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVAPNDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTTADILAEMSYFLNLAEGIGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D +++ PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEALTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+++ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSTYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 R+N YGFI+TPYRKV KVTN+VV+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 RLNKYGFIQTPYRKVDRATGKVTNEVVWLTADEEDEYIVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPSHLVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTGME A SGAA++AK G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PFVGTGMEYQAAHDSGAAVIAKHDGKVVYSDADKVEVRREDGSLD-------VYTIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMEGGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EEFE RDTKLGPEEITR++PNVSEE LKN+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEFESETRDTKLGPEEITRELPNVSEEALKNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 169/507 (33%), Positives = 236/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + +G M + + A + + D + V V Sbjct: 725 LVKVGDIVEKGDFIADGPSMEG-GEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVEREQIE-----LLARDKDDEQVILDRNIYSRLMEILCGQNA 995 + + + E E A DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITRELPNVSEEALKNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIYIATPVFDGASSEDLWDTVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ +LQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNILQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDYEVELRDLDEGEDD 1159 >gi|158513702|sp|A3CKD3|RPOB_STRSV RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1188 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 419/963 (43%), Positives = 581/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTNTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EIL F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEILDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLEARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLSVKTRLLNQTIAEPLVDAETGEILVEAGTVMTRSVIDSIAEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N L ++V+ P D Sbjct: 330 GLNKITYIPNDSAVLTAPVD----LQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRIVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+E G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEKGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y++ KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYQIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1234), Expect = e-132, Method: Composition-based stats. Identities = 168/507 (33%), Positives = 237/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|291523709|emb|CBK89296.1| DNA-directed RNA polymerase subunit beta [Eubacterium rectale DSM 17629] Length = 1313 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 433/960 (45%), Positives = 592/960 (61%), Gaps = 64/960 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 +R + + E++ +P+LIEVQK SY FL +EGL+ AF + PIT +SG Sbjct: 13 KSMRMSYSRQKEVLQMPNLIEVQKDSYQWFL----------DEGLKEAFADISPITDYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 L+FV + D K+ + +C RD TYA PLK+ +RL K +I E Sbjct: 63 KLSLDFVDFTLCEDDVKYTIPECKERDATYAAPLKVKVRLH---------NKETDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++ + GK LY+C +IP++ Sbjct: 114 EIFMGDLPLMTETGTFVINGAERVIVSQLVRSPGIYYGIAHDKL---GKTLYSCTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T L ALG+ + + IL F KI S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLLRALGVGTNQAILDMFGDEPKIQASFSKDPA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQV-IESGKKLTSGLLKSLKEKGVKFLGITS---- 300 + I GE + +ES + L + + + + +G Sbjct: 231 ITEREPQGSYEAG-LLELYKKIRPGEPLSVESAESLITAMFFDPRRYDLAKVGRYKFNKK 289 Query: 301 ----DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 + + G +AED+V+ TGE+ EAG V+D +I ++ +P L++ + N Sbjct: 290 LALKNRISGQVLAEDVVDPSTGEVIAEAGTVVDRALATQIQNA---AVPALWIQTETRNV 346 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 I ++++ D + L D + V E ++ + + S R++ Sbjct: 347 KILSSMMVD-IRSWIPELE---------DPKSIGVTELVYYPVLAQILEEYDSLEDRIEA 396 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 R D +HI KEDI A I + L G GT DDID+LGNRR+R+VGE+L+NQYR Sbjct: 397 IKRDISDLI--PKHITKEDIFATINYNMHLEWGAGTDDDIDHLGNRRIRAVGELLQNQYR 454 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GL R+ER ++ER+++ D++ + PQ LIN KPV +AV EFF SSQLSQ + N L +T Sbjct: 455 IGLSRLERVVRERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELT 514 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL +AR+N YG Sbjct: 515 HKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPVETPEGPNIGLINSLACYARINEYG 574 Query: 597 FIETPYRKV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 F+E PYRK+ + VT +VVY++A EE+N ++AQAN LD +G F V R Sbjct: 575 FVEAPYRKIDKTDPKNPVVTEEVVYMTADEEDNYHVAQANEKLDAEGHFIRNSVSGRYRE 634 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E + D++D SPK V S+A +LIPFL+NDD R LMG NMQRQAVPLL EAP V Sbjct: 635 ETQEYDKSAFDYMDVSPKMVFSVATALIPFLQNDDPTRALMGSNMQRQAVPLLTTEAPVV 694 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTG+E+ A SG +VAK G V ++ RI+I+ +G+ Y L KF RSN Sbjct: 695 GTGIETKAAVDSGVCVVAKADGEVLSSESNRIIIKETDGNKRE-------YILTKFSRSN 747 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 Q+ C NQRP+V GD+V+ D+IADGPST G+LALG+N L+ FM W GYN+ED++L+SE Sbjct: 748 QSNCYNQRPIVFKGDKVKAGDVIADGPSTSQGELALGKNPLIGFMTWEGYNYEDAVLLSE 807 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+V DV+TS+HIEE+EV +RDTKLGPEEITRD+P V ++ LK++DE GII VGAEV G Sbjct: 808 RLVEYDVYTSVHIEEYEVESRDTKLGPEEITRDVPGVGDDALKDLDERGIIRVGAEVRAG 867 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G +VD ++F R D Sbjct: 868 DILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAYGIIVDAKVFTRENGD 927 Score = 543 bits (1398), Expect = e-151, Method: Composition-based stats. Identities = 250/1051 (23%), Positives = 415/1051 (39%), Gaps = 70/1051 (6%) Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 + LL++Y+ +RPG+ + AES+ +FFD +YDL+ VGR K N +L L Sbjct: 239 SYEAGLLELYKKIRPGEPLSVESAESLITAMFFDPRRYDLAKVGRYKFNKKLALKNRISG 298 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + + ++ + ++ + L + + L Q +++ S+ Sbjct: 299 QVLAEDVVDPSTGEVIA----EAGTVVDRALATQIQNAAVPALWIQTETRNVKILSSMMV 354 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH--TRRLSALGQ 546 I S + P+ + + V V L+Q+ E +SL R +S L Sbjct: 355 DIRSWIPELEDPKSIGVTELVYYPV--------LAQILEEYDSLEDRIEAIKRDISDLIP 406 Query: 547 GGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVC 606 + + + +G + N + ++ + + R V Sbjct: 407 KHITKEDIFATINYNMHLEWGAGTDDDIDHLGN-RRIRAVGELLQNQYRIGLSRLERVVR 465 Query: 607 DGKVTNDVVYLSAMEEENRYIAQANSS----------LDEDGSFTEELVFCRC------- 649 + T D+ +S N A + + EL R Sbjct: 466 ERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSALGPG 525 Query: 650 --AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM-GCNMQRQAVPLLKA 706 + + + + V L N + + + Sbjct: 526 GLSRDRAGFEVRDVHYTHYGRMCPVETPEGPNIGLINSLACYARINEYGFVEAPYRKIDK 585 Query: 707 EAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMK 766 P E VV ++ A E++DA IR+ Y Sbjct: 586 TDPKNPVVTEEVVYMTADEEDNYHVAQANEKLDAEGHFIRN--SVSGRYREETQEYDKSA 643 Query: 767 FQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDS 826 F + + + + ++ +D +++ A+ A + G + + Sbjct: 644 FDYMDVSPKMVFSVATALIPFLQNDDPTRALMGSNMQRQAVPLLTTEAPVVGTGIETKAA 703 Query: 827 MLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGA 886 + +V++ + E ++ ++T E ++ I+ G Sbjct: 704 VDSGVCVVAKADGEVLSSESNRIIIKETDGNKREYI-LTKFSRSNQSNCYNQRPIVFKGD 762 Query: 887 EVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFN 946 +V GD++ + + + + L + + D L V V Sbjct: 763 KVKAGDVIADGPST-SQGELALGKNPLIGFMTWEGYNYEDAVLLSERLVEYDVYTSVHIE 821 Query: 947 RHGIDKNERSISVEREQIE------LLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 + ++ + + E + +D DE+ I+ R +IL G+ G Sbjct: 822 EYEVESRDTKLGPEEITRDVPGVGDDALKDL-DERGIIRVGAEVRAGDILVGKVTPKGET 880 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 L + E R E + K+ Sbjct: 881 ELTAEERLLRAIFGEKAR-----------------EVRDTSLKVPHGAYGIIVDAKVFTR 923 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 + GD++ PGV + V++++A KR I GDKMAGRHGNKG+VSR+LP EDMPFL +G P+DI Sbjct: 924 ENGDELSPGVNQSVRIYIAQKRKISVGDKMAGRHGNKGVVSRVLPVEDMPFLPNGRPLDI 983 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 VLNPLGVPSRMN+GQ+ E HL A LG I + + D DI + Sbjct: 984 VLNPLGVPSRMNIGQVLEIHLSLAAKALGFNISTPVFDGANEVDIEDTLELANDYVNLPF 1043 Query: 1181 HTEKISDYDDDSVLRVAEQWK--SGVPVSTPVFDG----ADEEAINSMLRMADLDESGQS 1234 E++ + + V T D + A S+ + + + G+ Sbjct: 1044 DKEELEKDLQAEHPYWSADAEIFYDKYVDTLREDVMEYLSTNRAHRSLWKGVPISKDGKV 1103 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 L DG TGE FD T+G+++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1104 QLRDGRTGECFDGKTTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRF 1163 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+I+ G + E G PESF VL+KE+ Sbjct: 1164 GEMEVWALEAYGAAYTLQEILTMKSDDVVGRVKTYEAIIKGENIPEPGIPESFKVLLKEL 1223 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 QALGL + + + + +E ++ ++ Sbjct: 1224 QALGLDVKVLDENREEVELIET-SEYGNTDI 1253 >gi|315640268|ref|ZP_07895385.1| DNA-directed RNA polymerase subunit beta [Enterococcus italicus DSM 15952] gi|315483930|gb|EFU74409.1| DNA-directed RNA polymerase subunit beta [Enterococcus italicus DSM 15952] Length = 1213 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 590/963 (61%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A VV G R R+ F + E++++P+LIE+Q SY FL +EGL+ F+ Sbjct: 15 LAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFL----------DEGLREMFE 64 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI F+G LEFV YE PK+ V++ D Y+ PL +TLRL + Sbjct: 65 DILPIDDFNGNLSLEFVDYELKTPKYTVEEARAHDANYSAPLHVTLRLT---------NR 115 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD PLMT+ GTF+I G +R++VSQL RSPG++F G+ +GK + Sbjct: 116 ETGEIKAQEVFFGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYFH---GKVDKNGKEGF 172 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+KDI +VRIDR RK+P+T + ALG S++ I F Sbjct: 173 GSTVIPNRGAWLEMETDAKDISYVRIDRTRKIPLTVLVRALGFGSDDTIFDIFGESKSLR 232 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +A+D + + GE +S + L + + + +G Sbjct: 233 NTIEKD-LHKNASDSRTEEGLKDVYERLRPGEPKTADSSRNLLNARFFDPRRYDLASVGR 291 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L L +AE +V+ ETGEI +E G VI + ++E Sbjct: 292 YKVNKKLDLRTRLLNLTLAETLVDPETGEIIVEKGTVITHQVMDE--------------- 336 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 Y+ N L +D G V+ + + F D ++ Sbjct: 337 --TLGEYLTNGLNAVTYYPSED-----------GVVTDPMTVQVIKVFSPLDPERE---- 379 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N +VR +R DII+ + +L G +DDID+LGNRR+RSVGE+ Sbjct: 380 -----INVIGNGYPGPEVRTVRPADIISAMSYFFNLMESIGKVDDIDHLGNRRIRSVGEL 434 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +++ PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 435 LQNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 494 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL++SL S+A Sbjct: 495 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLASYA 554 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +VN YGFIETPYR+V +VT+ + YL+A E++ +AQANS L+EDG+F +V R Sbjct: 555 KVNKYGFIETPYRRVDRESGRVTDTIDYLTADIEDHYVVAQANSPLNEDGTFKNSVVMAR 614 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E + + K+D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ ++ Sbjct: 615 ATSENLEIDVNKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPKS 674 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++ K G+VE VDA I +R G LD Y + KF+ Sbjct: 675 PWVGTGMEYKSAHDSGAALLCKADGVVEYVDAKEIRVRRDNGTLD-------TYAITKFR 727 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQRPLV +G++V + D +ADGPS + G++ALG+N+LVAFM W GYN+ED+++ Sbjct: 728 RSNSGTSYNQRPLVGLGEQVEKGDTLADGPSMENGEMALGQNVLVAFMTWEGYNYEDAVI 787 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +S R+V +DV+TS+HIEE+E ARDTKLGPEEITR+IPNV E+ LKN+DE GII +GAEV Sbjct: 788 MSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKNLDEMGIIRIGAEV 847 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GD+LVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 848 EDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRE 907 Query: 949 GID 951 D Sbjct: 908 AGD 910 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 173/499 (34%), Positives = 236/499 (47%), Gaps = 77/499 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +G +V GD L + M + +L A + + D + V V Sbjct: 740 LVGLGEQVEKGDTLADGPS-MENGEMALGQNVLVAFMTWEGYNYEDAVIMSRRLVKDDVY 798 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ ++L G+ Sbjct: 799 TSVHIEEYESEARDTKLGPEEITREIPNVGEDALKNLDEMGIIRIGAEVEDGDLLVGKVT 858 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G L + E R +V+ + + Sbjct: 859 PKGVTELSAEERLLHAIFGEKAR-----------EVRDTSLRVPHGGGGIVHDV------ 901 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++ PGV +V+V++ KR I GDKMAGRHGNKG+VSRI+P EDMPFL DG Sbjct: 902 KIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDG 961 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D Sbjct: 962 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGA--------------- 1006 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D+ V + T ++DG Sbjct: 1007 -------------SDEDVWETVREAGMAKDAKTILYDG---------------------- 1031 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD ++VG +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1032 ----RTGEPFDGRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG 1087 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q Sbjct: 1088 EMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQ 1147 Query: 1356 ALGLSIDLENSRTKNSAKM 1374 +LGL + + + + Sbjct: 1148 SLGLDMRVLDIDDQEIELR 1166 >gi|300857254|ref|YP_003782238.1| DNA-directed RNA polymerase subunit beta [Clostridium ljungdahlii DSM 13528] gi|300437369|gb|ADK17136.1| DNA-directed RNA polymerase beta chain [Clostridium ljungdahlii DSM 13528] Length = 1242 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 433/951 (45%), Positives = 600/951 (63%), Gaps = 57/951 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F + EI +P+LIEVQ SY+ FL EGLQ F + PI ++ Sbjct: 9 KRTRMSFSRLKEIGHMPNLIEVQLDSYNWFL----------KEGLQEVFDDINPIQDYTA 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV Y+ D K+ V++C RD TYA PLK+ +RLI K ++KEQ Sbjct: 59 NLNLEFVGYKLDMDNIKYSVEECKERDATYAAPLKVKVRLI---------NKETGEVKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++D + GK L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDLSVDKT---GKNLFSSTVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS--QRGDFW 245 G W++ E DS ++I+VRID+ RK+P+T + A+G ++ EI + F D Sbjct: 167 GAWLEYETDSNNVIYVRIDKTRKLPITILIRAMGYGTDAEITNFFGEDERLKATIEKDNT 226 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 A + +D+ + +IES L + + K K L + + Sbjct: 227 KTHEEALLEIYKRLRPGEPPTVDSAQSLIESLFFDAKRYDLSRVGRYKFNKKLSLHL-RI 285 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 A+D+VN +TGEI I+ G+ I+ + EI I + I D V I N V Sbjct: 286 ANQIAAQDVVNPDTGEILIQKGEKINREKAVEIQQCGINVVDIQIEDIVLR--VIGNNFV 343 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESM-FNFLFFDSDKYDLSTVGRVKMNMRLNL 422 R D+ ++ ES+ + L D Y + ++ ++ Sbjct: 344 D-------------IRSFIDFDIDDLNIKESVHYPTLKKILDNYSDEESIKEQIRKNIHE 390 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 P +HI ++D+ A I + L G G DDID+LGNRR+RSVGE+L+NQ+R+GL RM Sbjct: 391 LIP---KHIVRDDMYATISYELGLAYGVGHTDDIDHLGNRRLRSVGELLQNQFRIGLSRM 447 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER +KER++ D + + PQ LIN +PV +++ EFF SSQLSQ + N LS +TH RRLS Sbjct: 448 ERVVKERMTIQDQEVITPQALINIRPVAASIKEFFGSSQLSQFMDQTNPLSELTHKRRLS 507 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++ARVN YGFIETPY Sbjct: 508 ALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATYARVNQYGFIETPY 567 Query: 603 RKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 RKV + +VTN++VY++A EE+ I +AN +DE+G+F + + R + I+VP + Sbjct: 568 RKVDKENKRVTNEIVYMTADEEDEYLIGRANEPIDENGNFIDNKITVRDKEDVIVVPGQD 627 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 +D++D S +Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E A Sbjct: 628 VDYMDVSSRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEYKAA 687 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG A+ AG+V V A + ++ S G DIYRL+KFQRSNQ TC+NQRP Sbjct: 688 VDSGVLPKARNAGVVSYVCANEVRVKRD------SDGGTDIYRLLKFQRSNQCTCINQRP 741 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V+ G+ V++ ++ADGPSTDLG++ALG+N+ + F W GYN+ED+MLISE +V +DVFT Sbjct: 742 IVEKGEVVKKGTVLADGPSTDLGEIALGKNIRMGFTTWEGYNYEDAMLISEELVKKDVFT 801 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIH+EE+E ARDTKLGPEEITRDIPNV E+ LK+IDE GII +GAEV GDILVGK+TP Sbjct: 802 SIHLEEYESEARDTKLGPEEITRDIPNVGEDALKDIDERGIIRIGAEVRAGDILVGKVTP 861 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV++F R D Sbjct: 862 KGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRENGD 912 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 186/572 (32%), Positives = 261/572 (45%), Gaps = 77/572 (13%) Query: 814 AFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 A + G ++ ++ + + ++ EV + G +I R + Sbjct: 675 APIVGTGIEYKAAVDSGVLPKARNAGVVSYVCANEVRVKRDSDGGTDIYRLLKFQRSNQC 734 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 I++ I+ G V G +L + + + + + + D L Sbjct: 735 TCINQRPIVEKGEVVKKGTVLADGPSTDL-GEIALGKNIRMGFTTWEGYNYEDAMLISEE 793 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDK---DDEQVILDRNIYSRLME 988 V V + + + + E I + D DE+ I+ R + Sbjct: 794 LVKKDVFTSIHLEEYESEARDTKLGPEEITRDIPNVGEDALKDIDERGIIRIGAEVRAGD 853 Query: 989 ILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSI 1048 IL G+ G L + E R E Sbjct: 854 ILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRDTSLRVPHGE 896 Query: 1049 LEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCED 1108 K+ + GD++ PGV ++V+ ++A KR I GDKMAGRHGNKG++SR+LP ED Sbjct: 897 AGIIVDVKVFTRENGDELSPGVNKLVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEED 956 Query: 1109 MPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPL 1168 MPFL DG P+ I LNPLGVPSRMN+GQ+ E HLGWA LG + + + D DI Sbjct: 957 MPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASKLGWHVATPVFDGATEEDILEC 1016 Query: 1169 RSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADL 1228 G E+ Sbjct: 1017 LKKA----------------------------------------GYRED----------- 1025 Query: 1229 DESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 G++ILYDG TGE F+RPVTVGY+Y+LKL H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1026 ---GKTILYDGRTGEEFNRPVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQ 1082 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDVVGR + YE+IV G + E G PESF Sbjct: 1083 FGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGIPESFK 1142 Query: 1349 VLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 VL+KE+QAL L + + N + E + + Sbjct: 1143 VLIKELQALCLDVKVLNDNKEEIKLKESVDEE 1174 >gi|320547856|ref|ZP_08042140.1| DNA-directed RNA polymerase subunit beta [Streptococcus equinus ATCC 9812] gi|320447616|gb|EFW88375.1| DNA-directed RNA polymerase subunit beta [Streptococcus equinus ATCC 9812] Length = 1190 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 422/963 (43%), Positives = 585/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DNGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PIT F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPITNFTDTMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIMDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPADSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG V+ ++ I D+ Sbjct: 278 YKINKKLNIKTRLLNQTIAENLVDAETGEILVEAGTVMTRDVIDSIADQLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVAPNDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D R + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKARALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+++ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSTYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV +TN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGVITNEIVWLTADEEDEYTVAQANSKLNEDGTFAEDIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 600 HQGNNQEFPASVVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++AK G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAKHDGRVIFSDAEKVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQ LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYN+ED+++ Sbjct: 713 RSNSGTAYNQHTLVKVGDIVEKGDFIADGPSMEKGEMALGQNPIVAYMTWDGYNYEDAII 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV EE LK++DE GII +GAEV Sbjct: 773 LSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 174/508 (34%), Positives = 243/508 (47%), Gaps = 79/508 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + D + V V Sbjct: 725 LVKVGDIVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWDGYNYEDAIILSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQI----ELLARDKDDEQVILDRNIYSRLMEILCGQN 994 + + + E +I E +D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDL-DEMGIIRIGAEVKEGDILVGKV 842 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K L + + R +V+ + + + Sbjct: 843 TPKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV----- 886 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSR++P EDMP+L D Sbjct: 887 -KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRVVPVEDMPYLPD 945 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D + D+ Sbjct: 946 GTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGATSEDLW-------- 997 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 D +E A + ++ Sbjct: 998 -------------------------------------DTVNE---------AGMASDAKT 1011 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 +LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1012 VLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRF 1071 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+ Sbjct: 1072 GEMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKEL 1131 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNK 1382 Q+LGL + + + + + Sbjct: 1132 QSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|326203312|ref|ZP_08193177.1| DNA-directed RNA polymerase, beta subunit [Clostridium papyrosolvens DSM 2782] gi|325986570|gb|EGD47401.1| DNA-directed RNA polymerase, beta subunit [Clostridium papyrosolvens DSM 2782] Length = 1246 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 438/954 (45%), Positives = 605/954 (63%), Gaps = 65/954 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + K E++++P+LIEVQK SY FL +EGL+ F+ + PIT ++G Sbjct: 9 RNTRMSYSKMREVLEMPNLIEVQKNSYQWFL----------DEGLREVFRDISPITDYTG 58 Query: 71 AAMLEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +L+FV Y D PK+ V++C RD TY+ PLK +RLI K ++KEQ Sbjct: 59 NLILDFVDYSLDDTPKYSVEECKERDTTYSAPLKAKVRLI---------NKESGEVKEQE 109 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 I+MGD PLMT GTF+I G +R++VSQL RSPGI++ R GK LY+ +IP++G Sbjct: 110 IFMGDFPLMTDTGTFIINGAERVIVSQLVRSPGIYYSMKFDRV---GKKLYSNTVIPNRG 166 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ E DS DI+ VRIDR RK+P+T L ALG ++ EI+ Sbjct: 167 AWLEYETDSNDILSVRIDRTRKLPLTVLLRALGYGTDFEIMQLLGEDERLLATIQKDNAK 226 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS------- 300 + L+ K + GE ++S + L + L K + G Sbjct: 227 TTEEGLLEIYK------RLRPGEPPTVDSARSLLNSLFFDPKRYDLAKFGRFKFNKKLAI 280 Query: 301 -DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + + G AE+IV+ ETGE+ + G++I+ E+ +S + I+Y+ + + Sbjct: 281 SNLISGQVAAENIVSAETGEVLVTEGELIERDKAVEVQNSG---VNIVYLSVEGKSIKVI 337 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 D + DI + V + E + N + K L + Sbjct: 338 GNNTVDIHAYVD---FDISDLNINEKVKYAVLKEILENTSGEEQIKKTLKERINDLI--- 391 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 +HI +DIIA I +++L G G+IDDID+LGNRR+RSVGE+L+NQ+R+GL Sbjct: 392 --------PKHITIDDIIASINYIINLDYGIGSIDDIDHLGNRRIRSVGELLQNQFRIGL 443 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RMER ++ER++ DID V PQ LIN +PV +A+ EFF SSQLSQ + N L+ +T+ R Sbjct: 444 SRMERVVRERMTIQDIDIVTPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLAELTNKR 503 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+ SL+++ARVN YGFIE Sbjct: 504 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARVNEYGFIE 563 Query: 600 TPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 PYRKV + +VTN++VYL+A E+ +AQA L +DG+F V R E + V Sbjct: 564 APYRKVDRKNRRVTNEIVYLTADVEDPFVVAQATEPLSDDGTFVSNKVVARYRHEILEVE 623 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 KIDF+D SP+Q+VS+A ++IPFLENDD+NR LMG NMQRQAVPL+KA++P VGTG+E Sbjct: 624 SNKIDFMDVSPQQMVSVATAMIPFLENDDANRALMGSNMQRQAVPLIKADSPIVGTGIEF 683 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 A+ SG ++AK AG++++V A IVI++ G D Y+L+K+ RSNQ TC+N Sbjct: 684 KAARDSGVCVIAKNAGVIDKVSANEIVIKTNSGQKD-------TYKLLKYMRSNQGTCLN 736 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 QRP+V+ G+ + + +IIADGPSTD G++ALGRN+L+ FM W GYN+ED++LI+E++V ED Sbjct: 737 QRPIVRKGEMIEKGEIIADGPSTDNGEIALGRNILIGFMTWEGYNYEDAILINEKLVKED 796 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 V+TSIHIEE+E +RDTKLGPEEITRDIPNV EE LK++D+ GII +GAEV GDILVGK Sbjct: 797 VYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEEALKDLDDRGIIRIGAEVRSGDILVGK 856 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 +TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG +VDV++F R D Sbjct: 857 VTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIIVDVKVFTRENGD 910 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 269/1215 (22%), Positives = 432/1215 (35%), Gaps = 143/1215 (11%) Query: 213 PVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ 272 P+T IL + + + K L++ ++GE Sbjct: 52 PIT------DYTGNLILDFVDYSLDDTPKYSVEECKERDTTYSAPLKAKVRLINKESGEV 105 Query: 273 V------------IESGKKLTSGLLKSLKEKGVKFLGIT---SDCLCGLYVAEDIVNGET 317 ++G + +G + + + V+ GI G + + V Sbjct: 106 KEQEIFMGDFPLMTDTGTFIINGAERVIVSQLVRSPGIYYSMKFDRVGKKLYSNTVIPNR 165 Query: 318 G----------EIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKN 367 G +I D + L + + + + + + T+ D Sbjct: 166 GAWLEYETDSNDILSVRIDRTRKLPLTVLLRALGYGTDFEIMQLLGEDERLLATIQKDNA 225 Query: 368 KDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDD 427 K ++ LL+IY+ +RPG+ T A S+ N LFFD +YDL+ GR K N +L + Sbjct: 226 KTTEEGLLEIYKRLRPGEPPTVDSARSLLNSLFFDPKRYDLAKFGRFKFNKKLAISNLIS 285 Query: 428 VRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIK 487 + E+I++ V + G+ D ++ + + ++ Sbjct: 286 GQV-AAENIVSAETGEVLVTEGELIERDKAVEVQNSGVNIVYLSVEGKSIKVIGNNTVDI 344 Query: 488 ERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQG 547 DI + + + + + Q+ + R++ L Sbjct: 345 HAYVDFDISDLNINEKVKYAVLKEILENTSGEEQIKKTL-----------KERINDLIPK 393 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 + + + YG + N + S+ + + R V + Sbjct: 394 HITIDDIIASINYIINLDYGIGSIDDIDHLGN-RRIRSVGELLQNQFRIGLSRMERVVRE 452 Query: 608 GKVTNDVVYLSAMEEENRY-IAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDA 666 D+ ++ N +A A ++ + E R Sbjct: 453 RMTIQDIDIVTPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLAELTNKRRLSALGPGG 512 Query: 667 SPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG--------MESV 718 ++ + + + L A G ++ Sbjct: 513 LSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARVNEYGFIEAPYRKVDRK 572 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTS----GVDIYRLMKFQRSNQNT 774 + + + V A S +G + +I + + + Sbjct: 573 NRRVTNEIVYLTADVEDPFVVAQATEPLSDDGTFVSNKVVARYRHEILEVESNKIDFMDV 632 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE----DSMLIS 830 Q V + A+ ++ A P G E + Sbjct: 633 SPQQMVSVATAMIPFLENDDANRALMGSNMQRQAVPLIKADSPIVGTGIEFKAARDSGVC 692 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 + V + E + T G ++ + + + +++ I+ G + Sbjct: 693 VIAKNAGVIDKVSANE---IVIKTNSGQKDTYKLLKYMRSNQGTCLNQRPIVRKGEMIEK 749 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 G+I+ + + +L + + D L V V + Sbjct: 750 GEIIADGPSTDN-GEIALGRNILIGFMTWEGYNYEDAILINEKLVKEDVYTSIHIEEYEA 808 Query: 951 DKNERSISVER------EQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKK 1004 + + + E E +D DD I+ R +IL G+ G Sbjct: 809 ESRDTKLGPEEITRDIPNVGEEALKDLDDR-GIIRIGAEVRSGDILVGKVTPKGETELTA 867 Query: 1005 STVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGD 1064 L + E R E K+ + GD Sbjct: 868 EERLLRAIFGEKAR-----------------EVRDTSLRVPHGESGIIVDVKVFTRENGD 910 Query: 1065 DMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNP 1124 ++PPGV ++V+ ++A KR I GDKMAGRHGNKG++SRILP EDMPFL DGTP++IVLNP Sbjct: 911 ELPPGVNQLVRCYIAQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGTPLEIVLNP 970 Query: 1125 LGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEK 1184 LGVPSRMN+GQ+ E HLG+A LG KI + + D DI K Sbjct: 971 LGVPSRMNIGQVLEVHLGFAAKALGWKIATPVFDGATEEDIRDTLIQAGKDP-------- 1022 Query: 1185 ISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEP 1244 DG LYDG TG+P Sbjct: 1023 ---------------------------DGKTV-------------------LYDGRTGDP 1036 Query: 1245 FDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQA 1304 FD VTVGY+Y LKL H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++A Sbjct: 1037 FDNRVTVGYMYYLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1096 Query: 1305 YGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLE 1364 YGAAY LQE+LT+KSDDVVGR + YESIV G + E G PESF VL+KE+Q+L L + + Sbjct: 1097 YGAAYTLQEILTVKSDDVVGRVKTYESIVKGENIPEPGIPESFKVLIKELQSLALDVKVY 1156 Query: 1365 NSRTKNSAKMEEIPD 1379 + + A E + D Sbjct: 1157 SEEQEEIAIKEYVED 1171 >gi|170761098|ref|YP_001788829.1| DNA-directed RNA polymerase subunit beta [Clostridium botulinum A3 str. Loch Maree] gi|226699390|sp|B1KSN3|RPOB_CLOBM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|169408087|gb|ACA56498.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum A3 str. Loch Maree] Length = 1239 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 438/951 (46%), Positives = 600/951 (63%), Gaps = 57/951 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F + E+ +P+LIEVQ SYD FL EGLQ F + PI ++G Sbjct: 9 KRTRMSFSRLKEVGQMPNLIEVQLDSYDWFL----------KEGLQEVFDDINPIQDYTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV Y+ D K+ V++C RD TYA PLK+ +RL+ K +IKEQ Sbjct: 59 NLNLEFVGYKLDLDSIKYSVEECKERDSTYAAPLKVKVRLL---------NKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++D + G L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDMTVDKT---GSKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS--QRGDFW 245 G W++ E DS +II+VRID+ RK+P+T ALG ++ EI+ F D Sbjct: 167 GAWLEYETDSNNIIYVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATIEKDNT 226 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 A + +D+ E +IES L + + K K L I + Sbjct: 227 KTREEALLEIYKRLRPGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNKKLAIHL-RI 285 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 +DIVN +TGEI ++ G+ ID+ EI + + ++ I D + I N V Sbjct: 286 TNQIADQDIVNPQTGEILVQKGEKIDKDKAIEIQNCGVNEVYIKIDD--KSFKVIGNHFV 343 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL-FFDSDKYDLSTVGRVKMNMRLNL 422 + + D+S ++ E +F + D Y + ++ + Sbjct: 344 DIHS-------------LISFDISDLNIKEYVFYPVLKEILDNYADEESIKEEIRKNIYR 390 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 P +HI +EDI A I + L G DDID+LGNRR+RSVGE+L+NQ+R+GL RM Sbjct: 391 LIP---KHIIREDIYATINYELGLSYDIGYKDDIDHLGNRRLRSVGELLQNQFRIGLSRM 447 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER +KER++ D + + PQ LIN +PV +++ EFF SSQLSQ + N LS +TH RRLS Sbjct: 448 ERVVKERMTIQDQEVITPQALINIRPVAASIKEFFGSSQLSQFMDQTNPLSELTHKRRLS 507 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +FA+VN YGFIETPY Sbjct: 508 ALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFAKVNEYGFIETPY 567 Query: 603 RKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 R++ + + TND+VY++A EE+ IA+++ +DE+G F ++ V R E ++VP + Sbjct: 568 RRIDPKNKRATNDIVYMTADEEDLYVIARSDEPIDENGYFMDDKVTVRAKEEVLVVPVSE 627 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++++D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E A Sbjct: 628 VEYMDISPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEYKAA 687 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG AK AG V V A I +R S G+D Y+L+KF+RSNQ TC+NQRP Sbjct: 688 TDSGVLPKAKNAGTVAYVSADEIRVRRD------SDGGIDKYKLLKFKRSNQGTCINQRP 741 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V G+ V + ++ADGPSTDLG++ALG+N+L+ F+ W GYN+ED+MLISE++V EDVFT Sbjct: 742 IVSKGEVVAKETLLADGPSTDLGEIALGKNILMGFITWEGYNYEDAMLISEQLVREDVFT 801 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE+E ARDTKLGPEEITRDIPNV EE LK+IDE GII +GAEV GDILVGK+TP Sbjct: 802 SIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDERGIIRIGAEVRSGDILVGKVTP 861 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV+IF R D Sbjct: 862 KGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKIFTRENGD 912 Score = 499 bits (1285), Expect = e-138, Method: Composition-based stats. Identities = 188/544 (34%), Positives = 253/544 (46%), Gaps = 78/544 (14%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E+ R G + + + I++ I+ G V +L + Sbjct: 709 EIRVRRDSDGGIDKYKLLKFKRSNQGTCINQRPIVSKGEVVAKETLLADGPSTDLGEIAL 768 Query: 908 PEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + L+ I E A+ + + +R S + + R E Sbjct: 769 GKNILMGFITWEGYNYEDAMLISEQLVREDVFTSIHIEEYEAEARDTKLGPEEITRDIPN 828 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E +D DE+ I+ R +IL G+ G L + E R Sbjct: 829 VGEEALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR---- 883 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 E KI + GD++PPGV ++V+ ++A KR Sbjct: 884 -------------EVRDTSLRVPHGEAGIIVDVKIFTRENGDELPPGVNKLVRCYIAQKR 930 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E HLG Sbjct: 931 KISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLG 990 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG I + + D DI Sbjct: 991 LAASKLGWHIATPVFDGAIESDIVDCLRKA------------------------------ 1020 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G E+ G+++LYDG TGEPFD VTVGY+Y+LKL H+ Sbjct: 1021 ----------GYSED--------------GKTVLYDGRTGEPFDNRVTVGYMYILKLAHL 1056 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDV Sbjct: 1057 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDV 1116 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 VGR + YE+IV G + E G PESF VL+KE+QAL L + + N + E + D + Sbjct: 1117 VGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDDNQEIKLKESV-DEDV 1175 Query: 1383 CELK 1386 EL+ Sbjct: 1176 DELE 1179 >gi|312134688|ref|YP_004002026.1| DNA-directed RNA polymerase subunit beta [Caldicellulosiruptor owensensis OL] gi|311774739|gb|ADQ04226.1| DNA-directed RNA polymerase, beta subunit [Caldicellulosiruptor owensensis OL] Length = 1230 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 432/959 (45%), Positives = 600/959 (62%), Gaps = 60/959 (6%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 V G R +GK E++D+P L+E+QK S+ FL +EGL+ + + PI Sbjct: 7 VQYG-KVQRMSYGKVKEVLDLPYLLEIQKKSFQWFL----------DEGLREVLREISPI 55 Query: 66 TAFSGAAMLEFVSYEF-DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKD 124 +S +LEFV Y F PPK+ +C RD TYA PLK+ +RLI K + Sbjct: 56 KDYSETLLLEFVDYYFDGPPKYSEQECKERDATYARPLKVKVRLI---------NKETGE 106 Query: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRI 184 IKEQ IYMG+ P+MT+ GTF+I G +R++VSQL RSPG +F + G+ +++ + Sbjct: 107 IKEQDIYMGEFPIMTETGTFIINGAERVIVSQLIRSPGCYFASSIDKQ---GRRIFSGTL 163 Query: 185 IPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALG-MDSEEILSTFYPKIVYSQRGD 243 IP++G W++ E D+ +++ VR+DR RKV +T+ L A G + + I F + Sbjct: 164 IPNRGAWLEFETDTNELLSVRLDRTRKVSLTTLLKAFGLYNQQMIFEKFGEDERLKASLE 223 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS-- 300 + + A + + GE +E+ + L + + + + +G Sbjct: 224 KEANKGELGNPVENA-LLEVYRRLRPGEPPNVENARNLLNNMFFDPRRYDLAKVGRYKFN 282 Query: 301 ------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 + A+D+V+ TGEI ++ GD+I + I + I ++ + + Sbjct: 283 KKLSLWKRIFNKRAAQDVVDPRTGEILVKNGDMITREIALNIQDAGINEVWVYADEERLF 342 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 NT+ D+ D + ++ V E + N D+S + R+ Sbjct: 343 KVVGNNTVKLDRYVDFD------VSDLNIKELVYLPVLEEILNATN------DVSEIKRL 390 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DI A + L+ G G DDID+LGNRRVR+VGE+L+NQ Sbjct: 391 IKEK----ERELVPYCLTIDDIYAATSYFLGLKYGIGATDDIDHLGNRRVRAVGELLQNQ 446 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL RMER I+ER++ DID+V PQ LIN +PV +A+ EFF SS LSQ + VN L+ Sbjct: 447 FRIGLARMERVIRERMNIHDIDTVTPQTLINIRPVTAAIKEFFGSSPLSQFMDQVNPLAA 506 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +T+ RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++ARVN Sbjct: 507 LTNKRRLSALGPGGLSRDRAGFEVRDVHHSHYGRMCPIETPEGPNIGLITSLATYARVNE 566 Query: 595 YGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGE 652 YGF+ETPYRKV + +VT++VVYL+A EE+ IAQA +D++G F + V R E Sbjct: 567 YGFLETPYRKVDKKEARVTDEVVYLTADEEDTYKIAQATEPVDQEGRFINQRVTVRFGEE 626 Query: 653 EILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVG 712 I V + ++D ID SPKQ+VS++ SLIPFLENDD+NR LMG NMQRQAVPLL E+P +G Sbjct: 627 IIEVDKHEVDLIDISPKQIVSVSTSLIPFLENDDANRALMGSNMQRQAVPLLITESPIIG 686 Query: 713 TGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 TG+E A SG I+AK+ G+VE+V A IVIR+ +G D +Y L+KF+R+NQ Sbjct: 687 TGVEYRAAVDSGVCILAKKDGVVEKVSADEIVIRNNDGTKD-------VYHLLKFKRTNQ 739 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 TC NQRP+VK G EV+ ++IADGPSTD G+LALG+N+LVAFMPW GYN+ED++LISER Sbjct: 740 GTCFNQRPIVKKGQEVKAGEVIADGPSTDHGELALGKNVLVAFMPWEGYNYEDAILISER 799 Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ +K++DE GII +GAEV GD Sbjct: 800 LVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGEDAIKDLDERGIIRIGAEVKSGD 859 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 ILVGK+TPKGE+ +T EE+LLRAIFGEKA + RDTSLRVP G G VVDV++F+R D Sbjct: 860 ILVGKVTPKGETELTAEERLLRAIFGEKARETRDTSLRVPHGEGGIVVDVKVFSRDKGD 918 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 249/1194 (20%), Positives = 424/1194 (35%), Gaps = 162/1194 (13%) Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK-LTSGLLKSLKEKGVKFLGITSDCL 303 + + + +TG +I ++ + S L++S + + Sbjct: 99 LINKETGEIKEQDIYMGEFPIMTETGTFIINGAERVIVSQLIRSPGCYFASSIDKQGRRI 158 Query: 304 CGLYVAEDI-----VNGETGEIYIEAGDVIDEKSLEEIFHS-----EIRDIPILYVDSVN 353 + + +T E+ D + SL + + + D Sbjct: 159 FSGTLIPNRGAWLEFETDTNELLSVRLDRTRKVSLTTLLKAFGLYNQQMIFEKFGEDERL 218 Query: 354 NNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGR 413 + + + ++ALL++YR +RPG+ A ++ N +FFD +YDL+ VGR Sbjct: 219 KASLEKEANKGELGNPVENALLEVYRRLRPGEPPNVENARNLLNNMFFDPRRYDLAKVGR 278 Query: 414 VKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKN 473 K N +L+L ++ + +VD R G+ + + D + ++ + N Sbjct: 279 YKFNKKLSL--------WKRIFNKRAAQDVVDPRTGEILVKNGDMITREIALNIQDAGIN 330 Query: 474 QYRLG--LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNS 531 + + R+ + + +D +N K +V L LEE +N+ Sbjct: 331 EVWVYADEERLFKVVGNNTVKLDRYVDFDVSDLNIKELVY----------LPVLEEILNA 380 Query: 532 LSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFAR 591 + ++ +RL + + ++ +++ + G R Sbjct: 381 TNDVSEIKRLIKEKERELVPYCLTIDDIYAATSYFLGLKY-----GIGATDDIDHLGNRR 435 Query: 592 VNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 V A G + ++ ++ + E I ++ + + Sbjct: 436 VRAVGELLQNQFRIGLARMERVIR-------ERMNIHDIDTVTPQTLINIRPVTAAIK-- 486 Query: 652 EEILVPREKIDFIDASPKQVV----SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 E +P + ++A L D + + + Sbjct: 487 EFFGSSPLSQFMDQVNPLAALTNKRRLSALGPGGLSRDRAGFEVRDVHHSHYGRMCPIET 546 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 G+ + +A + +VD + L Sbjct: 547 PEGPNIGLITSLATYARVNEYGFLETPYRKVDKKEARVTDEVVYLTADEEDTYKIAQATE 606 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDII---------------------------ADGPST 800 + +NQR V+ G+E+ D A+ Sbjct: 607 PVDQEGRFINQRVTVRFGEEIIEVDKHEVDLIDISPKQIVSVSTSLIPFLENDDANRALM 666 Query: 801 DLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV----SEDVFTSIHIEEFEVMARDTKL 856 +L+ P G E + + + V + +E + Sbjct: 667 GSNMQRQAVPLLITESPIIGTGVEYRAAVDSGVCILAKKDGVVEKVSADE---IVIRNND 723 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G +++ + ++ I+ G EV G+++ + + + +L A Sbjct: 724 GTKDVYHLLKFKRTNQGTCFNQRPIVKKGQEVKAGEVIADGPST-DHGELALGKNVLVAF 782 Query: 917 FGEKAVDVRDTSLRVPS------GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARD 970 + + D L S + + R E E +D Sbjct: 783 MPWEGYNYEDAILISERLVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGEDAIKD 842 Query: 971 KDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEK 1030 DE+ I+ + +IL G+ G L + E R Sbjct: 843 L-DERGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRAIFGEKAR------------ 889 Query: 1031 VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKM 1090 E+ K+ GD++PPGV ++V+V+VA KR I GDKM Sbjct: 890 -----ETRDTSLRVPHGEGGIVVDVKVFSRDKGDELPPGVNQLVRVYVAQKRKISVGDKM 944 Query: 1091 AGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGK 1150 AGRHGNK GV SR+ Sbjct: 945 AGRHGNK----------------------------GVISRI------------------L 958 Query: 1151 KIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPV 1210 ++ + ++ V+ +++ G V+TPV Sbjct: 959 PVEDMPFLPDGTP--------VDIVLNPLGVPSRMNIGQILETHLGYAAKALGWKVATPV 1010 Query: 1211 FDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYAR 1270 FDGA EE I L++A L+ +G++ILYDG TGEPFD VTVGY+YMLKL H+V DK++AR Sbjct: 1011 FDGAKEEDIEEALKLAGLNPTGKTILYDGRTGEPFDNEVTVGYMYMLKLVHLVDDKIHAR 1070 Query: 1271 STGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYE 1330 STG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDV GR + YE Sbjct: 1071 STGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVTGRVKTYE 1130 Query: 1331 SIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 +IV G + E G PESF VLVKE+Q+L L + L + K E + D + + Sbjct: 1131 AIVKGENIPEPGIPESFKVLVKELQSLCLDVKLLSEDNKEIELKESVDDDEQPQ 1184 >gi|327467037|gb|EGF12551.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK330] gi|328945415|gb|EGG39568.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK1087] Length = 1188 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 582/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EIL F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEILDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLEARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLSVKTRLLNQTIAEPLVDAETGEILVEAGTVMTRSVIDSIAEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D L ++V+ P D Sbjct: 330 GLNKITYIPN----DSAVLTDPVELQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRIVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+E G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEKGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y++ KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYQIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 168/507 (33%), Positives = 237/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|303239015|ref|ZP_07325545.1| DNA-directed RNA polymerase, beta subunit [Acetivibrio cellulolyticus CD2] gi|302593353|gb|EFL63071.1| DNA-directed RNA polymerase, beta subunit [Acetivibrio cellulolyticus CD2] Length = 1251 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 445/954 (46%), Positives = 610/954 (63%), Gaps = 63/954 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 VR + K E+ID+P+LIE+Q+ SY FL ++GL+ F+ V PIT ++G Sbjct: 9 RNVRMSYSKIDEVIDMPNLIEIQRNSYIQFL----------DDGLREVFRDVSPITDYTG 58 Query: 71 AAMLEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +L+FV Y D PK+ V++C RD TY+ PLK+ +RLI K ++KEQ Sbjct: 59 NLILDFVDYSIDDNPKYSVEECKERDATYSAPLKVKVRLI---------NKETGEVKEQE 109 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 I+MGD PLMT +GTF+I G +R++VSQL RSPGI++ + GK LY+ +IP++G Sbjct: 110 IFMGDFPLMTDNGTFIINGAERVIVSQLVRSPGIYYAMKFDKI---GKQLYSNTVIPNRG 166 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ E DS D++ VRIDR RK+P+T L ALG ++ EI Sbjct: 167 AWLEYETDSNDVMSVRIDRTRKLPITVLLRALGYGTDLEITELLGEDERIIATIQKDSAK 226 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD------ 301 L+ K + GE +ES + L GL K + G Sbjct: 227 TEDEGLLEIYK------RLRPGEPPTVESARSLLFGLFFDPKRYDLAKFGRFKFNKKLSI 280 Query: 302 --CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + G AE+I++ ETGE+ + G+ I + E I ++ + + Y++ + Sbjct: 281 ASRINGFLAAENIIDPETGEVIVAEGEKISRQKAEVIQNAGVNAV---YLNIEGKKLKVM 337 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 + D L Y P ++ + + +K + + + + Sbjct: 338 GNGMVD---------LKSYVDFDPKEIGFNEKVKLSVLKTVLEENKDKDTEELKKAIKEK 388 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 ++ P ++I EDII+ I ++ L G G +DDID+LGNRR+RSVGE+L+NQ+R+GL Sbjct: 389 VDELIP---KYITVEDIISSINYIITLSYGVGQVDDIDHLGNRRLRSVGELLQNQFRIGL 445 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RMER ++ER++ DID V PQ LIN +PV +A+ EFF SSQLSQ + N L+ +TH R Sbjct: 446 ARMERVVRERMTIQDIDIVTPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLAELTHKR 505 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+ SL++FARVN YGFIE Sbjct: 506 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTFARVNEYGFIE 565 Query: 600 TPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 PYR+V KVTN++VYL+A EE+ +AQAN LDE+G F ++ V CR E + V Sbjct: 566 APYRRVDKETLKVTNEIVYLTADEEDAFIVAQANEPLDEEGKFLDKKVVCRAREEFLEVE 625 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 K+DF+D SPKQ+VS+A S+IPFLENDD+NR LMG NMQRQAVPL++ ++P VGTG+E Sbjct: 626 PSKVDFMDVSPKQIVSVATSMIPFLENDDANRALMGANMQRQAVPLIRTDSPIVGTGIEY 685 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 AK SG ++AK GI+E+V A IVIR+ EG D IY+L+K+ RSNQ TC+N Sbjct: 686 KAAKDSGVCVLAKNPGIIEKVSASEIVIRTKEGKRD-------IYKLLKYLRSNQGTCIN 738 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q+P+V+ G+EV + D+IADGPSTD G++ LGRN+L+ FM W GYN+ED++LISE++V ED Sbjct: 739 QKPIVRKGEEVEKGDVIADGPSTDKGEIGLGRNILIGFMTWEGYNYEDAILISEKLVKED 798 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 VFTSIHIEE+E +RDTKLGPEEITR+IPNVSE+ LK++D+ GII VGAEV GDILVGK Sbjct: 799 VFTSIHIEEYEAESRDTKLGPEEITREIPNVSEDSLKDLDDRGIIRVGAEVRSGDILVGK 858 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 +TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G SG +VDV++F R D Sbjct: 859 VTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIIVDVKVFTRENGD 912 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 189/533 (35%), Positives = 257/533 (48%), Gaps = 79/533 (14%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 TK G +I + + + I++ I+ G EV GD++ + + + + Sbjct: 714 RTKEGKRDIYKLLKYLRSNQGTCINQKPIVRKGEEVEKGDVIADGPST-DKGEIGLGRNI 772 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQI----EL 966 L + + D L V V + + + + E +I E Sbjct: 773 LIGFMTWEGYNYEDAILISEKLVKEDVFTSIHIEEYEAESRDTKLGPEEITREIPNVSED 832 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 +D DD I+ R +IL G+ G L + E R Sbjct: 833 SLKDLDDR-GIIRVGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR-------- 883 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 E K+ + GD++ PGV ++V+V++A KR I Sbjct: 884 ---------EVRDTSLRVPHGESGIIVDVKVFTRENGDELSPGVNQLVRVYIAQKRKISV 934 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG++SRILP EDMPFL DGTP+ IVLNPLGVPSRMN+GQ+ E HLG+A Sbjct: 935 GDKMAGRHGNKGVISRILPEEDMPFLPDGTPLQIVLNPLGVPSRMNIGQVLEVHLGFAAK 994 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG KI + + D DI Sbjct: 995 ALGWKIATPVFDGATEEDIVETLKKA---------------------------------- 1020 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 G E+ G+++LYDG TG PF+ VTVGY+Y+LKL H+V DK Sbjct: 1021 ------GLSED--------------GKTVLYDGRTGLPFENRVTVGYMYILKLAHLVDDK 1060 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDVVGR Sbjct: 1061 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRV 1120 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPD 1379 + YE+IV G + E G PESF VL+KE+Q+L L + + + + A E + D Sbjct: 1121 KTYEAIVKGENVPEPGIPESFKVLIKELQSLCLDVKVYSEEQEEIAIKESVED 1173 >gi|239628535|ref|ZP_04671566.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518681|gb|EEQ58547.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1296 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 437/954 (45%), Positives = 597/954 (62%), Gaps = 58/954 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 VR + + E++++P+LIE+QK SY FL +EGL+ AF + PI F+G Sbjct: 13 KSVRMSYSRQKEVLEMPNLIEIQKDSYQWFL----------DEGLREAFDDISPIADFAG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL D D ++ E Sbjct: 63 HLSLEFVDFTLCKDDIKYTIEECKERDATYAAPLKVKVRLYNKDKD---------EMNEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT G+FVI G +R++VSQL RSPGI++ + GK LY C +IP++ Sbjct: 114 EIFMGDLPLMTDTGSFVINGAERVIVSQLVRSPGIYYGIGHDKV---GKELYTCTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVPVT + ALG + EIL F K++ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPVTVLIRALGFGTNAEILELFGEEPKLLASFGKDTS 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E ++ S L K + K K L L Sbjct: 231 DNYQDGLLELYKKIRPGEPLSVDSAESLLNSMFFDPRRYDLAKVGRYKFNKKLSF-KYRL 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED+V+ TGEI EAG +D++S +I ++ +P ++VD + + + ++ Sbjct: 290 NGQILAEDVVDTTTGEILAEAGTKLDKESAMKIQNA---AVPFVWVDGPDRKQKVLSNMM 346 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 + + P D V E ++ + + +K +R N+ Sbjct: 347 VELSAHV------------PFDPEEVGVTELVYYPALSSILEEAGTDPEALKEAIRRNIH 394 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G DDID+LGNRR+R+VGE+L+NQYR+GL RME Sbjct: 395 -DLIPKHITKEDILASINYNMHLEGQVGNADDIDHLGNRRIRAVGELLQNQYRIGLSRME 453 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D+D + PQ LIN KPV +AV EFF SSQLSQ + N L+ +TH RRLSA Sbjct: 454 RVVRERMTTQDMDGITPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLAELTHKRRLSA 513 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL ++ARVN YGFIE PYR Sbjct: 514 LGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLINSLATYARVNQYGFIEAPYR 573 Query: 604 KVC------DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 V + +VT++VVYL+A EE+N +AQAN +LDE+G F V R E Sbjct: 574 VVDKTTDPANPRVTDEVVYLTADEEDNFVVAQANEALDEEGHFIHNNVSGRFRTETSEFQ 633 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 ++ ID +D SPK V S+A ++IPFLENDD+NR LMG NMQRQAVPLL EAP VGTG+ES Sbjct: 634 KKTIDLMDVSPKMVFSVATAMIPFLENDDANRALMGSNMQRQAVPLLTTEAPAVGTGIES 693 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 A SG +VA+ AG+VE+ + I+I+ + D+Y L KF+RSNQ+ C N Sbjct: 694 KAAVDSGVCVVARNAGVVERSASNEIIIKRDK------DGNRDVYHLTKFKRSNQSNCYN 747 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q+P+V D V ++IADGPSTD G++ALG+N L+ FM W GYN+ED++L+SER+V ED Sbjct: 748 QKPIVYKNDHVEAGEVIADGPSTDNGEIALGKNPLIGFMTWEGYNYEDAVLLSERLVQED 807 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 V+TS+HIEE+E ARDTKLGPEEITRD+P V E+ LK++DE GII +GAEV GDILVGK Sbjct: 808 VYTSVHIEEYEAEARDTKLGPEEITRDVPGVGEDALKDLDERGIIRIGAEVRAGDILVGK 867 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 +TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G +VD ++F R D Sbjct: 868 VTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAYGIIVDAKVFTRENGD 921 Score = 526 bits (1354), Expect = e-146, Method: Composition-based stats. Identities = 185/595 (31%), Positives = 267/595 (44%), Gaps = 42/595 (7%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLG 857 +L P G E + +V+ + E++ + K G Sbjct: 668 MGSNMQRQAVPLLTTEAPAVGTGIESKAAVDSGVCVVARNAGVVERSASNEIIIKRDKDG 727 Query: 858 PEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIF 917 ++ ++ I+ V G+++ + + + L Sbjct: 728 NRDVYHLTKFKRSNQSNCYNQKPIVYKNDHVEAGEVIADGPSTDN-GEIALGKNPLIGFM 786 Query: 918 GEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI------ELLARDK 971 + + D L V V + + + + E E +D Sbjct: 787 TWEGYNYEDAVLLSERLVQEDVYTSVHIEEYEAEARDTKLGPEEITRDVPGVGEDALKDL 846 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ R +IL G+ G L + E R Sbjct: 847 -DERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR------------- 892 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E + K+ + GD++ PGV V++++A KR I GDKMA Sbjct: 893 ----EVRDTSLKVPHGAYGIIVDAKVFTRENGDELSPGVNETVRIYIAQKRKISVGDKMA 948 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG Sbjct: 949 GRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFN 1008 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 + + I D DI + ++K + S + Sbjct: 1009 VSTPIFDGANENDIMDTLELANDYVNLP-------------WEEFEVKYKDLIKPSVMDY 1055 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 GA E + + + G+ L DG TGE FD VT+G+++ LKL+H+V DK++ARS Sbjct: 1056 LGAHLEH-RELWKGVPISRDGKVRLRDGRTGEFFDGAVTIGHMHYLKLHHLVDDKIHARS 1114 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE++T+KSDDVVGR + YE+ Sbjct: 1115 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEIMTVKSDDVVGRVKTYEA 1174 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCELK 1386 I+ G + E G PESF VL+KEMQ+LGL + + E I D+ EL+ Sbjct: 1175 IIKGENIPEPGVPESFKVLLKEMQSLGLDVQVLRDDGTEVEMAENI-DYGDTELR 1228 >gi|255282535|ref|ZP_05347090.1| DNA-directed RNA polymerase, beta subunit [Bryantella formatexigens DSM 14469] gi|255266828|gb|EET60033.1| DNA-directed RNA polymerase, beta subunit [Bryantella formatexigens DSM 14469] Length = 1282 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 435/966 (45%), Positives = 603/966 (62%), Gaps = 72/966 (7%) Query: 9 GLGRVR---------KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 R+R + + E++++P+LIEVQK SY FL +EGL+ F Sbjct: 2 EKNRIRPIKNGNSFRMSYSRQKEVLEMPNLIEVQKDSYQWFL----------DEGLKEVF 51 Query: 60 KSVFPITAFSGAAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFT 117 + PI + LEFV ++ D K+ +++C RD TYA PLK+ +RL Sbjct: 52 DDISPIRDYGEKLSLEFVDFKLCEDDVKYSIEECKERDATYAAPLKVKVRLH-------- 103 Query: 118 GAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 K +I E I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++ + GK Sbjct: 104 -NKETDEINEHEIFMGDLPLMTETGTFVINGAERVIVSQLVRSPGIYYGIAHDKI---GK 159 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP-- 234 L++C +IP++G W++ E DS DI +VR+DR RKVP+T + ALG+ + EIL F Sbjct: 160 RLFSCTVIPNRGAWLEYETDSNDIFYVRVDRTRKVPITVLVRALGISTNAEILELFGEEP 219 Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKG 292 KIV + D + + +++ E +I + L K + K Sbjct: 220 KIVATLAKDTATNYQEGLLELYKKIRPGEPLAVESAESLIMAMFFDPRRYDLAKVGRYKF 279 Query: 293 VKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSV 352 K L + + + G +AED+++ TGEI EAG + + I ++ +P ++V + Sbjct: 280 NKKL-LLRNRIAGHVLAEDVIDPSTGEILAEAGTKATRELADTIQNA---AVPFVWVQTE 335 Query: 353 NNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDV--STFSVAESMFNFLFFDSDKYDLST 410 N + ++++ D Y + P +V + ++ + L +SD D+ Sbjct: 336 ERNVKVLSSMMVDITN---------YVDIDPQEVGVTELVYYPALKSILEENSDIEDIKE 386 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 R ++ + +HI KEDI+A I + L G GT DDID+LGNRR+RSVGE+ Sbjct: 387 AIRRDIHDLIP-------KHITKEDILASINYNIHLEYGIGTDDDIDHLGNRRIRSVGEL 439 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQYR+GL R+ER ++ER+++ D++ + PQ LIN KPV +AV EFF SSQLSQ + N Sbjct: 440 LQNQYRIGLSRLERVVRERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNN 499 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL S+A Sbjct: 500 PLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLASYA 559 Query: 591 RVNAYGFIETPYRKV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELV 645 R+N YGFIE PYR + + +VT++VVY++A EE+N ++AQAN +LDE+G F + V Sbjct: 560 RINQYGFIEAPYRVIDKSDPKNPRVTDEVVYMTADEEDNYHVAQANEALDEEGHFIRKTV 619 Query: 646 FCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 R E R D++D SPK V S+A +LIPFL+NDD+NR LMG NMQRQAVPLL Sbjct: 620 SGRYREETQEYDRAMFDYMDVSPKMVFSVATALIPFLQNDDANRALMGSNMQRQAVPLLT 679 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 EAP VGTGME+ A SG +VAK AG VE+V + IVIR+ +G D Y L Sbjct: 680 TEAPVVGTGMETKTAVDSGVCVVAKHAGTVERVTSKDIVIRTDDGKRDE-------YHLT 732 Query: 766 KFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 KF RSNQ+ C NQ+P+V G+ V+ +IADGPST G++ALG+N L+ FM W GYN+ED Sbjct: 733 KFLRSNQSNCYNQKPIVFKGNRVQEGQVIADGPSTSNGEIALGKNPLIGFMTWEGYNYED 792 Query: 826 SMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVG 885 ++L+SER+V +DV+TS+HIEE+E ARDTKLGPEEITRD+P V ++ LK++DE GII VG Sbjct: 793 AVLLSERLVMDDVYTSVHIEEYEAEARDTKLGPEEITRDVPGVGDDALKDLDERGIIRVG 852 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 AEV GDILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F Sbjct: 853 AEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVF 912 Query: 946 NRHGID 951 R D Sbjct: 913 TREAGD 918 Score = 555 bits (1431), Expect = e-155, Method: Composition-based stats. Identities = 248/1135 (21%), Positives = 421/1135 (37%), Gaps = 85/1135 (7%) Query: 280 LTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHS 339 + G+ K + + + G ++ + ++ +I+ D + + + + Sbjct: 148 IYYGIAHDKIGKRLFSCTVIPNR--GAWLEYE---TDSNDIFYVRVDRTRKVPITVLVRA 202 Query: 340 EIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL 399 ++ I TL D + ++ LL++Y+ +RPG+ AES+ + Sbjct: 203 LGISTNAEILELFGEEPKIVATLAKDTATNYQEGLLELYKKIRPGEPLAVESAESLIMAM 262 Query: 400 FFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNL 459 FFD +YDL+ VGR K N +L L + ++ I G I Sbjct: 263 FFDPRRYDLAKVGRYKFNKKLLLRNRIAGHVLAEDVIDPST----------GEILAEAGT 312 Query: 460 GNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 R + + + ER++K S + + V V Sbjct: 313 KATRELADTIQNAAVPFVWVQTEERNVKVLSSMMVDITNYVDIDPQEVGVTELVYYPALK 372 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 S L + + + I R + L + + + YG + N Sbjct: 373 SILEENSDIEDIKEAI--RRDIHDLIPKHITKEDILASINYNIHLEYGIGTDDDIDHLGN 430 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSS------ 633 + S+ + + R V + T D+ +S N A Sbjct: 431 -RRIRSVGELLQNQYRIGLSRLERVVRERMTTQDLEGISPQSLINIKPVTAAVKEFFGSS 489 Query: 634 ----LDEDGSFTEELVFCRC---------AGEEILVPREKIDFIDASPKQVVSIAASLIP 680 + + EL R + + + + + Sbjct: 490 QLSQFMDQNNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNI 549 Query: 681 FLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDA 740 L N ++ + ++A + + + V Sbjct: 550 GLINSLASYARI------NQYGFIEAPYRVIDKSDPKNPRVTDEVVYMTADEEDNYHVAQ 603 Query: 741 IRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC-VNQRPL--VKVGDEVRRNDIIADG 797 + + + SG ++ R+ + V+ + + V + A+ Sbjct: 604 ANEALDEEGHFIRKTVSGRYREETQEYDRAMFDYMDVSPKMVFSVATALIPFLQNDDANR 663 Query: 798 PSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER-MVSEDVFTSIHIEEFEVMARDTKL 856 +L P G E + V ++ + + T Sbjct: 664 ALMGSNMQRQAVPLLTTEAPVVGTGMETKTAVDSGVCVVAKHAGTVERVTSKDIVIRTDD 723 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + ++ I+ G V G ++ + + L+ + Sbjct: 724 GKRDEYHLTKFLRSNQSNCYNQKPIVFKGNRVQEGQVIADGPSTSNGEIALGKNPLIGFM 783 Query: 917 --FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ---IELLARDK 971 G D S R+ T V + + D + R+ + +D Sbjct: 784 TWEGYNYEDAVLLSERLVMDDVYTSVHIEEYEAEARDTKLGPEEITRDVPGVGDDALKDL 843 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ R +IL G+ G L + E R Sbjct: 844 -DERGIIRVGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR------------- 889 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E + K+ + GD++ PGV + V++++A KR I GDKMA Sbjct: 890 ----EVRDTSLKVPHGEYGIVVDAKVFTREAGDELAPGVNQAVRIYIAQKRKISVGDKMA 945 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG Sbjct: 946 GRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFN 1005 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 + + I D DI + K ++ + +++ Sbjct: 1006 VSTPIFDGANENDIMDTLDLANDYVNLEWEEFKAKHEEELLPEVLDYLYEN--------- 1056 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 + + + G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARS Sbjct: 1057 -----RDHRKLWKGVPISRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARS 1111 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSL+TQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDD++GR + YE+ Sbjct: 1112 TGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDIIGRVKTYEA 1171 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCELK 1386 I+ G + E G PESF VL+KE+Q+LGL + + K E + + + +++ Sbjct: 1172 IIKGENIPEPGIPESFKVLLKELQSLGLDVRVLGENQKEVEIKETVE-YGETDIR 1225 >gi|222528810|ref|YP_002572692.1| DNA-directed RNA polymerase subunit beta [Caldicellulosiruptor bescii DSM 6725] gi|254765268|sp|B9MQG5|RPOB_ANATD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|222455657|gb|ACM59919.1| DNA-directed RNA polymerase, beta subunit [Caldicellulosiruptor bescii DSM 6725] Length = 1228 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 428/959 (44%), Positives = 600/959 (62%), Gaps = 60/959 (6%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 V G R +GK E++D+P L+E+QK S+ FL +EGL+ + + PI Sbjct: 7 VQYG-KVQRMSYGKVKEVLDLPYLLEIQKKSFQWFL----------DEGLREVLREISPI 55 Query: 66 TAFSGAAMLEFVSYEF-DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKD 124 +S +LEFV Y F PPK+ +C RD TYA PLK+ +RLI K + Sbjct: 56 KDYSETLLLEFVDYYFDGPPKYSEQECKERDATYARPLKVKVRLI---------NKETGE 106 Query: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRI 184 IKEQ IYMG+ P+MT+ GTF+I G +R++VSQL RSPG +F + G+ +++ + Sbjct: 107 IKEQDIYMGEFPIMTETGTFIINGAERVIVSQLIRSPGCYFASSIDKQ---GRKIFSGTL 163 Query: 185 IPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGD 243 IP++G W++ E D+ +++ VR+DR RKV +T+ L A G+ +++ I F + Sbjct: 164 IPNRGAWLEFETDASELLSVRLDRTRKVSLTTLLKAFGLYNQQLIFEKFGEDERLKASLE 223 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS-- 300 + + A + + GE +E+ + L + + + +G Sbjct: 224 KEANKGELGNPVENA-LLEVYRRLRPGEPPNVENARNLLYSMFFDPRRYDLAKVGRYKFN 282 Query: 301 ------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 + A+D+V+ +TGEI ++ G++I + +I + + ++ + + Sbjct: 283 KKLSLWKRIFNKRAAQDVVDPKTGEILVKEGELITREIATQIQDAGVNEVWVYADEERPF 342 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 NT+ D+ + + + + D + V + Sbjct: 343 KVVGNNTVKLDRYVEFD---------------VSDINIKELVYRPVLDDILNTTNDVLEI 387 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 K ++ + + +DI A + L+ G GT DDID+LGNRRVR+VGE+L+NQ Sbjct: 388 KRLIK-ERERELVPYCLTIDDIFAATSYFLGLKYGIGTTDDIDHLGNRRVRAVGELLQNQ 446 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL RMER I+ER++ DID+V PQ LIN +PV +A+ EFF SS LSQ + VN L+ Sbjct: 447 FRIGLARMERVIRERMNIHDIDTVTPQTLINIRPVTAAIKEFFGSSPLSQFMDQVNPLAA 506 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +T+ RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++ARVN Sbjct: 507 LTNKRRLSALGPGGLSRDRAGFEVRDVHHSHYGRMCPIETPEGPNIGLITSLATYARVNE 566 Query: 595 YGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGE 652 YGF+ETPYRKV + +VTN+VVYL+A EE+ IAQA +DE+G F + V R E Sbjct: 567 YGFLETPYRKVDKKEARVTNEVVYLTADEEDTYKIAQATEPVDEEGRFINQRVTVRFGEE 626 Query: 653 EILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVG 712 I V + ++D ID SPKQ+VS++ SLIPFLENDD+NR LMG NMQRQAVPLL E+P +G Sbjct: 627 IIEVDKHEVDLIDISPKQIVSVSTSLIPFLENDDANRALMGSNMQRQAVPLLMTESPIIG 686 Query: 713 TGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 TG+E A SG I+AK+ G+VE V A IVIR+ +G D +Y L+KF+R+NQ Sbjct: 687 TGVEYRAAVDSGVCILAKKDGVVENVSADEIVIRNNDGTKD-------VYHLLKFKRTNQ 739 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 TC NQRP+V+ G EV+ ++IADGPSTD G+LALG+N+LVAFMPW GYN+ED++LISER Sbjct: 740 GTCFNQRPIVRKGQEVKAGEVIADGPSTDHGELALGKNVLVAFMPWEGYNYEDAILISER 799 Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ +K++DE GII +GAEV GD Sbjct: 800 LVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGEDAIKDLDERGIIRIGAEVKSGD 859 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 ILVGK+TPKGE+ +T EE+LLRAIFGEKA + RDTSLRVP G G VVDV++F+R D Sbjct: 860 ILVGKVTPKGETELTAEERLLRAIFGEKARETRDTSLRVPHGEGGIVVDVKVFSRDKGD 918 Score = 449 bits (1154), Expect = e-123, Method: Composition-based stats. Identities = 164/538 (30%), Positives = 234/538 (43%), Gaps = 79/538 (14%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 G +++ + ++ I+ G EV G+++ + + + + Sbjct: 720 RNNDGTKDVYHLLKFKRTNQGTCFNQRPIVRKGQEVKAGEVIADGPST-DHGELALGKNV 778 Query: 913 LRAIFGEKAVDVRDTSLRVPS------GVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 L A + + D L S + + R E E Sbjct: 779 LVAFMPWEGYNYEDAILISERLVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGED 838 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 +D DE+ I+ + +IL G+ G L + E R Sbjct: 839 AIKDL-DERGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRAIFGEKAR-------- 889 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 E+ K+ GD++PPGV ++V+V+VA KR I Sbjct: 890 ---------ETRDTSLRVPHGEGGIVVDVKVFSRDKGDELPPGVNQLVRVYVAQKRKISV 940 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNK GV SR+ Sbjct: 941 GDKMAGRHGNK----------------------------GVISRI--------------- 957 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 ++ + ++ V+ +++ G V Sbjct: 958 ---LPVEDMPFLPDGTP--------VDIVLNPLGVPSRMNIGQILETHLGYAAKALGWKV 1006 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA EE I L++A L+ +G++ILYDG TGEPFD VTVGY+YMLKL H+V DK Sbjct: 1007 ATPVFDGAKEEDIEEALKLAGLNPTGKTILYDGRTGEPFDNEVTVGYMYMLKLVHLVDDK 1066 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDV GR Sbjct: 1067 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVTGRV 1126 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 + YE+IV G + E G PESF VLVKE+Q+L L + L + K E + + + + Sbjct: 1127 KTYEAIVKGENIPEPGIPESFKVLVKELQSLCLDVKLLSEDNKEIELKESVDEDEQPQ 1184 >gi|154503742|ref|ZP_02040802.1| hypothetical protein RUMGNA_01566 [Ruminococcus gnavus ATCC 29149] gi|153795842|gb|EDN78262.1| hypothetical protein RUMGNA_01566 [Ruminococcus gnavus ATCC 29149] Length = 1285 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 436/953 (45%), Positives = 592/953 (62%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++++P+LIEVQK SY FL +EGL+ F + PI+ ++G Sbjct: 13 KSSRMSYSRQKEVLEMPNLIEVQKDSYQWFL----------DEGLKEVFDDISPISDYAG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL + +I E Sbjct: 63 HFSLEFVDFTLCEDDVKYTIEECKERDATYAAPLKVRVRLY---------NRETDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMTK GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 114 EIFMGDLPLMTKTGTFVINGAERVIVSQLVRSPGIYYGIAHDKL---GKELYSSTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG+ + EI+ F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGIGTNAEIIDLFGEEPKILASFGKDTA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 231 ENYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDPRRYDLAKVGRYKFNKKLAL-KNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G VAED+VN TGEI E G +I + + I +S + + D N + N +V Sbjct: 290 KGQKVAEDVVNELTGEIVAEKGTLITAEIADAIQNSGAPFVWVEGEDESRNIKILSNMMV 349 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 + A++DI D V E ++ + + V +K ++ ++ Sbjct: 350 DLQ------AVVDI-------DPEEVGVTEQVYYPVLAGLLEESAGDVEELKSLIKRDIH 396 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G DDID+LGNRR+R+VGE+L+NQYR+GL R+E Sbjct: 397 -DLIPKHITKEDILASINYNIHLEYRMGNDDDIDHLGNRRIRAVGELLQNQYRIGLSRLE 455 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D D V PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 456 RVVRERMTTQDQDGVSPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 515 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++AR+N YGFIE PYR Sbjct: 516 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLATYARINEYGFIEAPYR 575 Query: 604 KVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 K+ + VT DVVY++A EE+N ++AQAN+ LDE+G F + V R E R Sbjct: 576 KIDKTDPMNPIVTEDVVYMTADEEDNYHVAQANTPLDEEGHFLHKNVSGRYREETQEYER 635 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 K D++D SP+ V S+A +LIPFLENDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 636 SKFDYMDVSPQMVFSVATALIPFLENDDANRALMGSNMQRQAVPLLTTEAPAVGTGMEVK 695 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG +VA+RAG+VE + I I+ +G Y+L KF RSNQ+ C NQ Sbjct: 696 AAVDSGVCMVAERAGVVESSTSTSITIKHDDGTK-------KTYKLTKFLRSNQSNCYNQ 748 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 P+V G+ V +IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V+EDV Sbjct: 749 VPIVDKGERVEAGQVIADGPSTSNGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVAEDV 808 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRDIP V ++ LK++DE GII +GAEV GDILVGK+ Sbjct: 809 YTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDLDERGIIRIGAEVRAGDILVGKV 868 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G +VD ++F R D Sbjct: 869 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIIVDAKVFTRENGD 921 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 243/1065 (22%), Positives = 404/1065 (37%), Gaps = 75/1065 (7%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D I + D ++ ++ LL++Y+ +RPG+ AES+ +FFD +YDL Sbjct: 212 IDLFGEEPKILASFGKDTAENYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDPRRYDL 271 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 + VGR + N R ++ ++ L G+ + + ++ Sbjct: 272 AKVGRY----KFNKKLALKNRIKGQKVAEDVVNELT----GEIVAEKGTLITAEIADAIQ 323 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 + R+IK + + + V V + L + Sbjct: 324 NSGAPFVWVEGEDESRNIKILSNMMVDLQAVVDIDPEEVGVTEQVYYPVLAGLLEESAGD 383 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVE-MRDVHPTH-YGRICPAETSEGHNIGLVSSL 586 V L + R + L + + ++H + G + I V L Sbjct: 384 VEELKSLI-KRDIHDLIPKHITKEDILASINYNIHLEYRMGNDDDIDHLGNRRIRAVGEL 442 Query: 587 TSFARVNAYGFIETPYRKVCDGKVTND-----------VVYLSAMEEENRYIAQANSSLD 635 + + R V + T D + ++A +E +Q + +D Sbjct: 443 L---QNQYRIGLSRLERVVRERMTTQDQDGVSPQSLINIKPVTAAVKEFFGSSQLSQFMD 499 Query: 636 ED---GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM 692 ++ G T + + R + D + P N L Sbjct: 500 QNNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLA 559 Query: 693 GCNMQRQAVPLLKAEAPFVGTG-MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGD 751 + + T M +V + + V + Sbjct: 560 TYARINEYGFIEAPYRKIDKTDPMNPIVTED--VVYMTADEEDNYHVAQANTPLDEEGHF 617 Query: 752 LDPSTSGVDIYRLMKFQRSNQNTC-VNQRPL--VKVGDEVRRNDIIADGPSTDLGDLALG 808 L + SG +++RS + V+ + + V + A+ Sbjct: 618 LHKNVSGRYREETQEYERSKFDYMDVSPQMVFSVATALIPFLENDDANRALMGSNMQRQA 677 Query: 809 RNMLVAFMPWHGYNFEDSMLISERMVS-EDVFTSIHIEEFEVMARDTKLGPEEITRDIPN 867 +L P G E + + + + + G ++ + Sbjct: 678 VPLLTTEAPAVGTGMEVKAAVDSGVCMVAERAGVVESSTSTSITIKHDDGTKKTYKLTKF 737 Query: 868 VSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDT 927 + ++ I+ G V G ++ + M + L + + D Sbjct: 738 LRSNQSNCYNQVPIVDKGERVEAGQVIADGPSTSN-GEMALGKNPLIGFMTWEGYNYEDA 796 Query: 928 SLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE------LLARDKDDEQVILDRN 981 L V+ V + + + + E + +D DE+ I+ Sbjct: 797 VLLSERLVAEDVYTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDL-DERGIIRIG 855 Query: 982 IYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQ 1041 R +IL G+ G L + E R E Sbjct: 856 AEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRDTS 898 Query: 1042 YETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVS 1101 + K+ + GD++ PGV + V++++A KR I GDKMAGRHGNKG+VS Sbjct: 899 LKVPHGEYGIIVDAKVFTRENGDELSPGVNQSVRIYIAQKRKISVGDKMAGRHGNKGVVS 958 Query: 1102 RILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKA 1161 R+LP EDMP+L +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG + + + Sbjct: 959 RVLPVEDMPYLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNVATPVFGGAN 1018 Query: 1162 NGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINS 1221 DI + + ++ + V + + Sbjct: 1019 ENDIMDTLDLAND-YVNMEWEDFEKKHGEELLPEVLQYLSD-------------NREHRA 1064 Query: 1222 MLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQ 1281 + + L G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARSTG YSLVTQQ Sbjct: 1065 LWKGVPLSRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQ 1124 Query: 1282 PLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFET 1341 PLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ G + E Sbjct: 1125 PLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGENIPEP 1184 Query: 1342 GTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCELK 1386 G PESF VL+KE+Q+L L + + ME + D+ + +L+ Sbjct: 1185 GIPESFKVLLKELQSLALDVRVLRDDNTEVEIMEAV-DYGETDLR 1228 >gi|317501870|ref|ZP_07960055.1| DNA-directed RNA polymerase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088617|ref|ZP_08337528.1| DNA-directed RNA polymerase subunit beta [Lachnospiraceae bacterium 3_1_46FAA] gi|316896760|gb|EFV18846.1| DNA-directed RNA polymerase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407574|gb|EGG87074.1| DNA-directed RNA polymerase subunit beta [Lachnospiraceae bacterium 3_1_46FAA] Length = 1287 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 434/953 (45%), Positives = 587/953 (61%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++++P+LIEVQK SY FL +EGL+ F + PI +SG Sbjct: 13 KSFRMSYSRQKEVLEMPNLIEVQKDSYQWFL----------DEGLKEVFDDISPIADYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +D+C RD TYA PLK+ +RL K +I E Sbjct: 63 HLSLEFVDFTLCEDDVKYTIDECKERDATYAAPLKVRVRLH---------NKETDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMTK GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 114 EIFMGDLPLMTKTGTFVINGAERVIVSQLVRSPGIYYGIAHDKL---GKKLYSSTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG+ + EI+ F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGIGTNAEIVDLFGEEPKILASFTKDTA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 231 ESYQEGLLELYKKIRPGEPLAVDSAESLINSMFFDPRRYDLAKVGRYKFNKKL-MLKNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED V+ TGEI E G I + ++I ++ + + + D N + N +V Sbjct: 290 AGCILAEDAVSQLTGEIVAEKGTKITRELADKIQNNAVPYLWVEGEDEERNIKILSNMMV 349 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 + D V E ++ + + + +K ++ ++ Sbjct: 350 DFQAVTDI-------------DPEEVGVTEQVYYPVLAGIIEESAGDIEEMKALIKRDIH 396 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G GT DDID+LGNRR+R+VGE+L+NQYR+GL R+E Sbjct: 397 -DLIPKHITKEDILASINYNMHLEYGMGTDDDIDHLGNRRIRAVGELLQNQYRIGLSRLE 455 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D + + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 456 RVVRERMTTQDQEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 515 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++AR+N YGF+E PYR Sbjct: 516 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLATYARINQYGFVEAPYR 575 Query: 604 KV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 + + VT VVY++A EE+N ++AQAN+ LDE+G F + V R E R Sbjct: 576 WIDKSDPENPVVTEKVVYMTADEEDNYHVAQANTPLDEEGHFIHKNVSGRYREETQEYER 635 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 K D++D SPK V S+A +LIPFLENDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 636 SKFDYMDVSPKMVFSVATALIPFLENDDANRALMGSNMQRQAVPLLTTEAPVVGTGMEVK 695 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG +VA+RAG VE + IV+R +G Y+L KFQRSNQ+ C NQ Sbjct: 696 AAVDSGVCVVAERAGTVESSTSKEIVVREEDGKKTS-------YKLTKFQRSNQSNCYNQ 748 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V GD V +IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V +DV Sbjct: 749 RPIVNKGDVVAAGQVIADGPSTSGGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQDDV 808 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRDIP V ++ LK++DE GII +GAEV GDILVGK+ Sbjct: 809 YTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDLDERGIIRIGAEVRAGDILVGKV 868 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R D Sbjct: 869 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTRENGD 921 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 255/1066 (23%), Positives = 416/1066 (39%), Gaps = 77/1066 (7%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 VD I + D + ++ LL++Y+ +RPG+ AES+ N +FFD +YDL Sbjct: 212 VDLFGEEPKILASFTKDTAESYQEGLLELYKKIRPGEPLAVDSAESLINSMFFDPRRYDL 271 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 + VGR K N +L L + ++ + + +V + K T + D + N V Sbjct: 272 AKVGRYKFNKKLMLKNRIAGCILAEDAVSQLTGEIVAEKGTKITRELADKIQNNAV---- 327 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 + ER+IK + + + V V + + + Sbjct: 328 ----PYLWVEGEDEERNIKILSNMMVDFQAVTDIDPEEVGVTEQVYYPVLAGIIEESAGD 383 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 + + + R + L + + + YG + N + ++ Sbjct: 384 IEEMKALI-KRDIHDLIPKHITKEDILASINYNMHLEYGMGTDDDIDHLGN-RRIRAVGE 441 Query: 589 FARVNAYGFIETPYRKVCDGKVTND-----------VVYLSAMEEENRYIAQANSSLDED 637 + + R V + T D + ++A +E +Q + +D++ Sbjct: 442 LLQNQYRIGLSRLERVVRERMTTQDQEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQN 501 Query: 638 ---GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 G T + + R + D + P N L Sbjct: 502 NPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLATY 561 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS----VEG 750 Q + + E+ V + A A + + Sbjct: 562 ARINQYGFVEAPYRWIDKSDPENPVVTEKVVYMTADEEDNYHVAQANTPLDEEGHFIHKN 621 Query: 751 DLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRN 810 Y KF + + + + + +D +++ A+ Sbjct: 622 VSGRYREETQEYERSKFDYMDVSPKMVFSVATALIPFLENDDANRALMGSNMQRQAVPLL 681 Query: 811 MLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSE 870 A + G + ++ +V+E T E++ R+ + G + + Sbjct: 682 TTEAPVVGTGMEVKAAVDSGVCVVAERAGTVESSTSKEIVVRE-EDGKKTSYKLTKFQRS 740 Query: 871 EGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLR 930 ++ I+ G V G ++ + G M + L + + D L Sbjct: 741 NQSNCYNQRPIVNKGDVVAAGQVIADGPSTSG-GEMALGKNPLIGFMTWEGYNYEDAVLL 799 Query: 931 VPSGVSGTVVDVRIFNRHGIDKNERSISVE--REQI--------ELLARDKDDEQVILDR 980 V D + H + + + E+I + +D DE+ I+ Sbjct: 800 ----SERLVQDDVYTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDL-DERGIIRI 854 Query: 981 NIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKV 1040 R +IL G+ G L + E R E Sbjct: 855 GAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRDT 897 Query: 1041 QYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIV 1100 + K+ + GD++ PGV + V++++A KR I GDKMAGRHGNKG+V Sbjct: 898 SLKVPHGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGVV 957 Query: 1101 SRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK 1160 SR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG I + + D Sbjct: 958 SRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNISTPVFDGA 1017 Query: 1161 ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAIN 1220 DI E + + + V + Sbjct: 1018 NEIDIMDTLDLAND-YVNLEWEEFEKKHGQELLPEVLQYLSD-------------NREHR 1063 Query: 1221 SMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQ 1280 ++ + L G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARSTG YSLVTQ Sbjct: 1064 NLWKGVPLSRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQ 1123 Query: 1281 QPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFE 1340 QPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ G + E Sbjct: 1124 QPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGENIPE 1183 Query: 1341 TGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCELK 1386 G PESF VL+KE+Q+L L + + ME + D+ + +L+ Sbjct: 1184 PGIPESFKVLLKELQSLALDVRVLRDDNTEVEIMENV-DYGETDLR 1228 >gi|324994403|gb|EGC26317.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK678] gi|325688490|gb|EGD30507.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK72] gi|325689597|gb|EGD31602.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK115] gi|327473093|gb|EGF18520.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK408] gi|327490872|gb|EGF22653.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK1058] Length = 1188 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 582/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EIL F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEILDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLEARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDAETGEILVEAGTVMTRSVIDSIAEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D L ++V+ P D Sbjct: 330 GLNKITYIPN----DSAVLTDPVELQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRIVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+E G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEKGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y++ KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYQIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 168/507 (33%), Positives = 237/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|77413372|ref|ZP_00789565.1| DNA-directed RNA polymerase, beta subunit [Streptococcus agalactiae 515] gi|77160542|gb|EAO71660.1| DNA-directed RNA polymerase, beta subunit [Streptococcus agalactiae 515] Length = 1191 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DAGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ +LEFV YE PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMVLEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E D+KDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDAKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+GETGEI +EAG V+ ++ I D+ Sbjct: 278 YKINKKLNLKTRLLNQTIAENLVDGETGEILVEAGTVMTRDVIDSIAEHIDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVILQKFKVVAPTDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGNS--------NPEDKVRALTPADILAEMSYFLNLAEGIGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRSTGAVTNEIVWLTADEEDEFTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSSIVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++AK G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAKHDGRVIFSDAEKVEVRREDGSLD-------VYHVQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDLVEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV E+ L+++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDSLRDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 170/507 (33%), Positives = 236/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDLVEKGDFIADGPS-MENGEMALGQNPVVAYMTWEGYNFEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEDSLRDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWETVQEAGMD 1006 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 T ++DG Sbjct: 1007 SDAK----------------------------TVLYDG---------------------- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|325693918|gb|EGD35837.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK150] Length = 1188 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 582/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EIL F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEILDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLDARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLSVKTRLLNQTIAEPLVDAETGEILVEAGTVMTRSVIDSIAEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D L ++V+ P D Sbjct: 330 GLNKITYIPN----DSAVLTDPVELQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRIVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+E G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEKGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y++ KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYQIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 168/507 (33%), Positives = 237/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|160937581|ref|ZP_02084942.1| hypothetical protein CLOBOL_02472 [Clostridium bolteae ATCC BAA-613] gi|158439650|gb|EDP17400.1| hypothetical protein CLOBOL_02472 [Clostridium bolteae ATCC BAA-613] Length = 1309 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 438/954 (45%), Positives = 593/954 (62%), Gaps = 58/954 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 VR + + E++++P+LIE+QK SY FL EGL+ AF + PI F+G Sbjct: 28 KSVRMSYSRQKEVLEMPNLIEIQKDSYQWFL----------KEGLKEAFDDISPIADFAG 77 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL D D ++ E Sbjct: 78 HLSLEFVDFTLCKDDIKYTIEECKERDATYAAPLKVKVRLYNKDKD---------EMNEH 128 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT G+FVI G +R++VSQL RSPGI++ + GK LY C +IP++ Sbjct: 129 EIFMGDLPLMTDTGSFVINGAERVIVSQLVRSPGIYYGIGHDKV---GKELYTCTVIPNR 185 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVPVT + ALG + EIL F K++ S D Sbjct: 186 GAWLEYETDSNDVFYVRVDRTRKVPVTVLIRALGFGTNAEILELFGEEPKLLASFGKDTS 245 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E ++ S L K + K K L L Sbjct: 246 DNYQDGLLELYKKIRPGEPLSVDSAESLLNSMFFDPRRYDLAKVGRYKFNKKLSF-KYRL 304 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED+V+ TGEI EAG +D++S I ++ +P ++VD + + + ++ Sbjct: 305 NGQVLAEDVVDTATGEILAEAGTKLDKESAMRIQNA---AVPYVWVDGPDRKQKVLSNMM 361 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 + + P D V E ++ + + +K +R N+ Sbjct: 362 VELSAYV------------PFDPEEVGVTELVYYPALASILEEAGTDEESLKEAVRRNIH 409 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G DDID+LGNRR+R+VGE+L+NQYR+GL RME Sbjct: 410 -DLIPKHITKEDILASINYNMHLEEQVGNADDIDHLGNRRIRAVGELLQNQYRIGLSRME 468 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D+D + PQ LIN KPV +AV EFF SSQLSQ + N L+ +TH RRLSA Sbjct: 469 RVVRERMTTQDMDGITPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLAELTHKRRLSA 528 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL ++ARVN YGFIE PYR Sbjct: 529 LGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLINSLATYARVNQYGFIEAPYR 588 Query: 604 KVCD------GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 V +VT++VVYL+A EE+N +AQAN +LDE+G F V R E Sbjct: 589 VVDKTTDPSSPRVTDEVVYLTADEEDNFVVAQANEALDEEGHFIHNNVSGRFRTETSEFQ 648 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 ++ ID +D SPK V S+A ++IPFLENDD+NR LMG NMQRQAVPLL EAP VGTG+E+ Sbjct: 649 KKTIDLMDVSPKMVFSVATAMIPFLENDDANRALMGSNMQRQAVPLLTTEAPAVGTGIEA 708 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 A SG +VAK AG+VE+ + I+IR S D+Y L KF+RSNQ+ C N Sbjct: 709 KAAVDSGVCVVAKNAGVVERSASNEIIIRRD------SDGNRDVYHLTKFKRSNQSNCYN 762 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q+P+V D V ++IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V ED Sbjct: 763 QKPIVYKNDHVEAGEVIADGPSTSNGEIALGKNPLIGFMTWEGYNYEDAVLLSERLVQED 822 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 V+TS+HIEE+E ARDTKLGPEEITRD+P V E+ LK++DE GII +GAEV GDILVGK Sbjct: 823 VYTSVHIEEYEAEARDTKLGPEEITRDVPGVGEDALKDLDERGIIRIGAEVRAGDILVGK 882 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 +TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G +VD ++F R D Sbjct: 883 VTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAYGIIVDAKVFTRENGD 936 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 177/545 (32%), Positives = 255/545 (46%), Gaps = 40/545 (7%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E++ R G ++ ++ I+ V G+++ + + Sbjct: 733 EIIIRRDSDGNRDVYHLTKFKRSNQSNCYNQKPIVYKNDHVEAGEVIADGPSTSN-GEIA 791 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI--- 964 + L + + D L V V + + + + E Sbjct: 792 LGKNPLIGFMTWEGYNYEDAVLLSERLVQEDVYTSVHIEEYEAEARDTKLGPEEITRDVP 851 Query: 965 ---ELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E +D DE+ I+ R +IL G+ G L + E R Sbjct: 852 GVGEDALKDL-DERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR--- 907 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 E + K+ + GD++ PGV + V++++A K Sbjct: 908 --------------EVRDTSLKVPHGAYGIIVDAKVFTRENGDELSPGVNQTVRIYIAQK 953 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R I GDKMAGRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL Sbjct: 954 RKISVGDKMAGRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHL 1013 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 A LG + + I D DI + + +L+ + Sbjct: 1014 SLAAKALGFNVSTPIFDGANENDIMDTLEVANDYVNLS---WDEFKAKYEDLLKPSVIDY 1070 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 G + + + + G+ L DG TGE FD VT+G+++ LKL+H Sbjct: 1071 LGAHL-----------EHRELWKGVPISRDGKVRLRDGRTGEYFDGAVTIGHMHYLKLHH 1119 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE++T+KSDD Sbjct: 1120 LVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEIMTVKSDD 1179 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 VVGR + YE+I+ G + E G PESF VL+KEMQ+LGL + + E I D+ Sbjct: 1180 VVGRVKTYEAIIKGENIPEPGVPESFKVLLKEMQSLGLDVQVLRDDGTEVEMNENI-DYG 1238 Query: 1382 KCELK 1386 EL+ Sbjct: 1239 DTELR 1243 >gi|324990484|gb|EGC22422.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK353] Length = 1188 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 582/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EIL F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEILDIFGDNDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLEARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDAETGEILVEAGTVMTRSVIDSIAEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D L ++V+ P D Sbjct: 330 GLNKITYIPN----DSAVLTDPVELQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRIVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+E G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEKGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y++ KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYQIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 168/507 (33%), Positives = 237/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|153935474|ref|YP_001389211.1| DNA-directed RNA polymerase subunit beta [Clostridium botulinum A str. Hall] gi|152931388|gb|ABS36887.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum A str. Hall] Length = 1232 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 440/951 (46%), Positives = 601/951 (63%), Gaps = 57/951 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F + E+ +P+LIEVQ SYD FL EGLQ F + PI ++G Sbjct: 9 KRTRMSFSRLKEVGQMPNLIEVQLDSYDWFL----------KEGLQEVFDDINPIQDYTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV Y+ D K+ V++C RD TYA PLK+ +RL+ K +IKEQ Sbjct: 59 NLNLEFVGYKLDLDSIKYSVEECKERDSTYAAPLKVKVRLL---------NKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++D + G L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDMTVDKT---GSKLFSTTVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS--QRGDFW 245 G W++ E DS +II+VRID+ RK+P+T ALG ++ EI+ F D Sbjct: 167 GAWLEYETDSNNIIYVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATIEKDNT 226 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 A + +D+ E +IES L + + K K L I + Sbjct: 227 KTREEALLEIYKRLRPGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNKKLAIHL-RI 285 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 +DIVN +TGEI ++ G+ ID+ EI + I ++ I D + I N V Sbjct: 286 TNQIADQDIVNPQTGEILVQKGEKIDKDKAIEIQNCGINEVYIKIDD--KSFKVIGNHFV 343 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL-FFDSDKYDLSTVGRVKMNMRLNL 422 + + P D+S ++ E +F + D Y + ++ + Sbjct: 344 DIHS-------------LVPFDISDLNIKEYVFYPVLKEILDNYADEESIKEEIRKNIYR 390 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 P +HI +EDI A I + L G DDID+LGNRR+RSVGE+L+NQ+R+GL RM Sbjct: 391 LIP---KHIIREDIYATINYELALSYDIGYKDDIDHLGNRRLRSVGELLQNQFRIGLSRM 447 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER +KER++ D + + PQ LIN +PV +++ EFF SSQLSQ + N LS +TH RRLS Sbjct: 448 ERVVKERMTIQDQEVITPQALINIRPVAASIKEFFGSSQLSQFMDQTNPLSELTHKRRLS 507 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +FA+VN YGFIETPY Sbjct: 508 ALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFAKVNEYGFIETPY 567 Query: 603 RKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 R++ + + TND+VY++A EE+ IA+++ +DE+G F ++ V R E ++VP + Sbjct: 568 RRIDPKNKRATNDIVYMTADEEDLYVIARSDEPIDENGYFIDDKVTVRAKEEVLVVPVSE 627 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++++D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E A Sbjct: 628 VEYMDISPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEYKAA 687 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG AK AG V V A I +R S G+D Y+L+KF+RSNQ TC+NQRP Sbjct: 688 TDSGVLPKAKNAGTVVYVSADEIRVRRD------SDGGIDKYKLLKFKRSNQGTCINQRP 741 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V G+ V + ++ADGPSTDLG++ALG+N+L+ F+ W GYN+ED+MLISE++V EDVFT Sbjct: 742 IVSKGEVVAKETLLADGPSTDLGEIALGKNILMGFITWEGYNYEDAMLISEQLVKEDVFT 801 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE+E ARDTKLGPEEITRDIPNV EE LK+IDE GII +GAEV GDILVGK+TP Sbjct: 802 SIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDERGIIRIGAEVRSGDILVGKVTP 861 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV+IF R D Sbjct: 862 KGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKIFTRENGD 912 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 187/544 (34%), Positives = 253/544 (46%), Gaps = 78/544 (14%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E+ R G + + + I++ I+ G V +L + Sbjct: 709 EIRVRRDSDGGIDKYKLLKFKRSNQGTCINQRPIVSKGEVVAKETLLADGPSTDLGEIAL 768 Query: 908 PEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + L+ I E A+ + + ++ S + + R E Sbjct: 769 GKNILMGFITWEGYNYEDAMLISEQLVKEDVFTSIHIEEYEAEARDTKLGPEEITRDIPN 828 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E +D DE+ I+ R +IL G+ G L + E R Sbjct: 829 VGEEALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR---- 883 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 E KI + GD++PPGV ++V+ ++A KR Sbjct: 884 -------------EVRDTSLRVPHGEAGIIVDVKIFTRENGDELPPGVNKLVRCYIAQKR 930 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E HLG Sbjct: 931 KISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLG 990 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG I + + D DI Sbjct: 991 LAASKLGWHIATPVFDGAIESDIVDCLRKA------------------------------ 1020 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G E+ G+++LYDG TGEPFD VTVGY+Y+LKL H+ Sbjct: 1021 ----------GYSED--------------GKTVLYDGRTGEPFDNRVTVGYMYILKLAHL 1056 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDV Sbjct: 1057 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDV 1116 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 VGR + YE+IV G + E G PESF VL+KE+QAL L + + N + E + D + Sbjct: 1117 VGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDDNQEIKLKESV-DEDA 1175 Query: 1383 CELK 1386 EL+ Sbjct: 1176 DELE 1179 >gi|153815044|ref|ZP_01967712.1| hypothetical protein RUMTOR_01261 [Ruminococcus torques ATCC 27756] gi|145847612|gb|EDK24530.1| hypothetical protein RUMTOR_01261 [Ruminococcus torques ATCC 27756] Length = 1287 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 434/953 (45%), Positives = 587/953 (61%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++++P+LIEVQK SY FL +EGL+ F + PI +SG Sbjct: 13 KSFRMSYSRQKEVLEMPNLIEVQKDSYQWFL----------DEGLKEVFDDISPIADYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +D+C RD TYA PLK+ +RL K +I E Sbjct: 63 HLSLEFVDFTLCEDDVKYTIDECKERDATYAAPLKVRVRLH---------NKETDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMTK GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 114 EIFMGDLPLMTKTGTFVINGAERVIVSQLVRSPGIYYGIAHDKL---GKKLYSSTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG+ + EI+ F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGIGTNAEIVDLFGEEPKILASFTKDTA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 231 ESYQEGLLELYKKIRPGEPLAVDSAESLINSMFFDPRRYDLAKVGRYKFNKKL-MLKNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED V+ TGEI E G I + ++I ++ + + + D N + N +V Sbjct: 290 AGCILAEDAVSQLTGEIVAEKGTKITRELADKIQNNAVPYLWVEGEDEERNIKILSNMMV 349 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 + D V E ++ + + + +K ++ ++ Sbjct: 350 DLQAVTDI-------------DPEEVGVTEQVYYPVLAGIIEESAGDIEEMKALIKRDIH 396 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G GT DDID+LGNRR+R+VGE+L+NQYR+GL R+E Sbjct: 397 -DLIPKHITKEDILASINYNMHLEYGMGTDDDIDHLGNRRIRAVGELLQNQYRIGLSRLE 455 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D + + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 456 RVVRERMTTQDQEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 515 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++AR+N YGF+E PYR Sbjct: 516 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLATYARINQYGFVEAPYR 575 Query: 604 KV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 + + VT VVY++A EE+N ++AQAN+ LDE+G F + V R E R Sbjct: 576 WIDKSDPENPVVTEKVVYMTADEEDNYHVAQANTPLDEEGHFIHKNVSGRYREETQEYER 635 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 K D++D SPK V S+A +LIPFLENDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 636 SKFDYMDVSPKMVFSVATALIPFLENDDANRALMGSNMQRQAVPLLTTEAPVVGTGMEVK 695 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG +VA+RAG VE + IV+R +G Y+L KFQRSNQ+ C NQ Sbjct: 696 AAVDSGVCVVAERAGTVESSTSKEIVVREEDGKKTS-------YKLTKFQRSNQSNCYNQ 748 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V GD V +IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V +DV Sbjct: 749 RPIVNKGDVVAAGQVIADGPSTSGGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQDDV 808 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRDIP V ++ LK++DE GII +GAEV GDILVGK+ Sbjct: 809 YTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDLDERGIIRIGAEVRAGDILVGKV 868 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R D Sbjct: 869 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTRENGD 921 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 255/1066 (23%), Positives = 416/1066 (39%), Gaps = 77/1066 (7%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 VD I + D + ++ LL++Y+ +RPG+ AES+ N +FFD +YDL Sbjct: 212 VDLFGEEPKILASFTKDTAESYQEGLLELYKKIRPGEPLAVDSAESLINSMFFDPRRYDL 271 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 + VGR K N +L L + ++ + + +V + K T + D + N V Sbjct: 272 AKVGRYKFNKKLMLKNRIAGCILAEDAVSQLTGEIVAEKGTKITRELADKIQNNAV---- 327 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 + ER+IK + + + V V + + + Sbjct: 328 ----PYLWVEGEDEERNIKILSNMMVDLQAVTDIDPEEVGVTEQVYYPVLAGIIEESAGD 383 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 + + + R + L + + + YG + N + ++ Sbjct: 384 IEEMKALI-KRDIHDLIPKHITKEDILASINYNMHLEYGMGTDDDIDHLGN-RRIRAVGE 441 Query: 589 FARVNAYGFIETPYRKVCDGKVTND-----------VVYLSAMEEENRYIAQANSSLDED 637 + + R V + T D + ++A +E +Q + +D++ Sbjct: 442 LLQNQYRIGLSRLERVVRERMTTQDQEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQN 501 Query: 638 ---GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 G T + + R + D + P N L Sbjct: 502 NPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLATY 561 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS----VEG 750 Q + + E+ V + A A + + Sbjct: 562 ARINQYGFVEAPYRWIDKSDPENPVVTEKVVYMTADEEDNYHVAQANTPLDEEGHFIHKN 621 Query: 751 DLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRN 810 Y KF + + + + + +D +++ A+ Sbjct: 622 VSGRYREETQEYERSKFDYMDVSPKMVFSVATALIPFLENDDANRALMGSNMQRQAVPLL 681 Query: 811 MLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSE 870 A + G + ++ +V+E T E++ R+ + G + + Sbjct: 682 TTEAPVVGTGMEVKAAVDSGVCVVAERAGTVESSTSKEIVVRE-EDGKKTSYKLTKFQRS 740 Query: 871 EGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLR 930 ++ I+ G V G ++ + G M + L + + D L Sbjct: 741 NQSNCYNQRPIVNKGDVVAAGQVIADGPSTSG-GEMALGKNPLIGFMTWEGYNYEDAVLL 799 Query: 931 VPSGVSGTVVDVRIFNRHGIDKNERSISVE--REQI--------ELLARDKDDEQVILDR 980 V D + H + + + E+I + +D DE+ I+ Sbjct: 800 ----SERLVQDDVYTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDL-DERGIIRI 854 Query: 981 NIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKV 1040 R +IL G+ G L + E R E Sbjct: 855 GAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRDT 897 Query: 1041 QYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIV 1100 + K+ + GD++ PGV + V++++A KR I GDKMAGRHGNKG+V Sbjct: 898 SLKVPHGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGVV 957 Query: 1101 SRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYK 1160 SR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG I + + D Sbjct: 958 SRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNISTPVFDGA 1017 Query: 1161 ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAIN 1220 DI E + + + V + Sbjct: 1018 NEIDIMDTLDLAND-YVNLEWEEFEKKHGQELLPEVLQYLSD-------------NREHR 1063 Query: 1221 SMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQ 1280 ++ + L G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARSTG YSLVTQ Sbjct: 1064 NLWKGVPLSRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQ 1123 Query: 1281 QPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFE 1340 QPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ G + E Sbjct: 1124 QPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGENIPE 1183 Query: 1341 TGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCELK 1386 G PESF VL+KE+Q+L L + + ME + D+ + +L+ Sbjct: 1184 PGIPESFKVLLKELQSLALDVRVLRDDNTEVEIMENV-DYGETDLR 1228 >gi|170757275|ref|YP_001783129.1| DNA-directed RNA polymerase subunit beta [Clostridium botulinum B1 str. Okra] gi|226699389|sp|B1IGG2|RPOB_CLOBK RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|169122487|gb|ACA46323.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum B1 str. Okra] Length = 1232 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 439/951 (46%), Positives = 599/951 (62%), Gaps = 57/951 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F + E+ +P+LIEVQ SYD FL EGLQ F + PI ++G Sbjct: 9 KRTRMSFSRLKEVGQMPNLIEVQLDSYDWFL----------KEGLQEVFDDINPIQDYTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV Y+ D K+ V++C RD TYA PLK+ +RL+ K +IKEQ Sbjct: 59 NLNLEFVGYKLDLDSIKYSVEECKERDSTYAAPLKVKVRLL---------NKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++D + G L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDMTVDKT---GSKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS--QRGDFW 245 G W++ E DS +II+VRID+ RK+P+T ALG ++ EI+ F D Sbjct: 167 GAWLEYETDSNNIIYVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATIEKDNT 226 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 A + +D+ E +IES L + + K K L I + Sbjct: 227 KTREEALLEIYKRLRPGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNKKLAIHL-RI 285 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 +DIVN +TGEI ++ G+ ID+ EI I ++ I D + I N V Sbjct: 286 TNQIADQDIVNPQTGEILVQKGEKIDKDKAIEIQSCGINEVYIKIDD--KSFKVIGNHFV 343 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL-FFDSDKYDLSTVGRVKMNMRLNL 422 + + D+S ++ E +F + D Y + ++ + Sbjct: 344 DIHS-------------LVSFDISDLNIKEYVFYPVLKEILDNYADEESIKEEIRKNIYR 390 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 P +HI +EDI A I + L G DDID+LGNRR+RSVGE+L+NQ+R+GL RM Sbjct: 391 LIP---KHIIREDIYATINYELALSYDIGYKDDIDHLGNRRLRSVGELLQNQFRIGLSRM 447 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER +KER++ D + + PQ LIN +PV +++ EFF SSQLSQ + N LS +TH RRLS Sbjct: 448 ERVVKERMTIQDQEVITPQALINIRPVAASIKEFFGSSQLSQFMDQTNPLSELTHKRRLS 507 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +FA+VN YGFIETPY Sbjct: 508 ALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFAKVNEYGFIETPY 567 Query: 603 RKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 R++ + + TND+VY++A EE+ IA+++ +DE+G F ++ V R E ++VP + Sbjct: 568 RRIDPKNKRATNDIVYMTADEEDLYVIARSDEPIDENGYFIDDKVTVRAKEEVLVVPVSE 627 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++++D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E A Sbjct: 628 VEYMDISPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEYKAA 687 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG AK AG V V A I +R S G+D Y+L+KF+RSNQ TC+NQRP Sbjct: 688 TDSGVLPKAKNAGTVVYVSADEIRVRRD------SDGGIDKYKLLKFKRSNQGTCINQRP 741 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V G+ V + ++ADGPSTDLG++ALG+N+L+ F+ W GYN+ED+MLISE++V EDVFT Sbjct: 742 IVSKGEVVAKETLLADGPSTDLGEIALGKNILMGFITWEGYNYEDAMLISEQLVKEDVFT 801 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE+E ARDTKLGPEEITRDIPNV EE LK+IDE GII +GAEV GDILVGK+TP Sbjct: 802 SIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDERGIIRIGAEVRSGDILVGKVTP 861 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV+IF R D Sbjct: 862 KGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKIFTRENGD 912 Score = 499 bits (1285), Expect = e-138, Method: Composition-based stats. Identities = 187/544 (34%), Positives = 253/544 (46%), Gaps = 78/544 (14%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E+ R G + + + I++ I+ G V +L + Sbjct: 709 EIRVRRDSDGGIDKYKLLKFKRSNQGTCINQRPIVSKGEVVAKETLLADGPSTDLGEIAL 768 Query: 908 PEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + L+ I E A+ + + ++ S + + R E Sbjct: 769 GKNILMGFITWEGYNYEDAMLISEQLVKEDVFTSIHIEEYEAEARDTKLGPEEITRDIPN 828 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E +D DE+ I+ R +IL G+ G L + E R Sbjct: 829 VGEEALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR---- 883 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 E KI + GD++PPGV ++V+ ++A KR Sbjct: 884 -------------EVRDTSLRVPHGEAGIIVDVKIFTRENGDELPPGVNKLVRCYIAQKR 930 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E HLG Sbjct: 931 KISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLG 990 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG I + + D DI Sbjct: 991 LAASKLGWHIATPVFDGAIESDIVDCLRKA------------------------------ 1020 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G E+ G+++LYDG TGEPFD VTVGY+Y+LKL H+ Sbjct: 1021 ----------GYSED--------------GKTVLYDGRTGEPFDNRVTVGYMYILKLAHL 1056 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDV Sbjct: 1057 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDV 1116 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 VGR + YE+IV G + E G PESF VL+KE+QAL L + + N + E + D + Sbjct: 1117 VGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDDNQEIKLKESV-DEDA 1175 Query: 1383 CELK 1386 EL+ Sbjct: 1176 DELE 1179 >gi|187776568|ref|ZP_02993041.1| hypothetical protein CLOSPO_00082 [Clostridium sporogenes ATCC 15579] gi|187775227|gb|EDU39029.1| hypothetical protein CLOSPO_00082 [Clostridium sporogenes ATCC 15579] Length = 1236 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 439/951 (46%), Positives = 599/951 (62%), Gaps = 57/951 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F + E+ +P+LIEVQ SYD FL EGLQ F + PI ++G Sbjct: 9 KRTRMSFSRLKEVGQMPNLIEVQLDSYDWFL----------KEGLQEVFDDINPIQDYTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV Y+ D K+ V++C RD TYA PLK+ +RL+ K +IKEQ Sbjct: 59 NLNLEFVGYKLDLDSIKYSVEECKERDSTYAAPLKVKVRLL---------NKETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++D + G L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDMTVDKT---GSKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS--QRGDFW 245 G W++ E DS +II+VRID+ RK+P+T ALG ++ EI+ F D Sbjct: 167 GAWLEYETDSNNIIYVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATIEKDNT 226 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 A + +D+ E +IES L + + K K L I + Sbjct: 227 KTREEALLEIYKRLRPGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNKKLAIHL-RI 285 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 +DIVN +TGEI ++ G+ ID+ EI + I ++ I D + I N V Sbjct: 286 TNQIADQDIVNPQTGEILVQKGEKIDKDKAIEIQNCGINEVYIKIDD--KSFKVIGNHFV 343 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL-FFDSDKYDLSTVGRVKMNMRLNL 422 + + D+S ++ E +F + D Y + ++ + Sbjct: 344 DIHS-------------LVSFDISDLNIKEYVFYPVLKEILDNYADEESIKEEIRKNIYR 390 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 P +HI +EDI A I + L G DDID+LGNRR+RSVGE+L+NQ+R+GL RM Sbjct: 391 LIP---KHIIREDIYATINYELGLSYDIGYKDDIDHLGNRRLRSVGELLQNQFRIGLSRM 447 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER +KER++ D + + PQ LIN +PV +++ EFF SSQLSQ + N LS +TH RRLS Sbjct: 448 ERVVKERMTIQDQEVITPQALINIRPVAASIKEFFGSSQLSQFMDQTNPLSELTHKRRLS 507 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +FA+VN YGFIETPY Sbjct: 508 ALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFAKVNEYGFIETPY 567 Query: 603 RKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 R++ + + TND+VY++A EE+ IA+++ +DE G F ++ V R E ++VP + Sbjct: 568 RRIDPKNKRATNDIVYMTADEEDLYVIARSDEPIDEKGYFLDDKVTVRAKEEVLVVPVSE 627 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA 720 ++++D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E A Sbjct: 628 VEYMDISPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEYKAA 687 Query: 721 KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP 780 SG AK AG V V A I +R S G+D Y+L+KF+RSNQ TC+NQRP Sbjct: 688 TDSGVLPKAKNAGTVVYVSADEIRVRRD------SDGGIDKYKLLKFKRSNQGTCINQRP 741 Query: 781 LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT 840 +V G+ V + ++ADGPSTDLG++ALG+N+L+ F+ W GYN+ED+MLISE++V EDVFT Sbjct: 742 IVSKGEVVAKETLLADGPSTDLGEIALGKNILMGFITWEGYNYEDAMLISEQLVKEDVFT 801 Query: 841 SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP 900 SIHIEE+E ARDTKLGPEEITRDIPNV EE LK+IDE GII +GAEV GDILVGK+TP Sbjct: 802 SIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDERGIIRIGAEVRSGDILVGKVTP 861 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 KGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV+IF R D Sbjct: 862 KGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKIFTRENGD 912 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 187/544 (34%), Positives = 253/544 (46%), Gaps = 78/544 (14%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E+ R G + + + I++ I+ G V +L + Sbjct: 709 EIRVRRDSDGGIDKYKLLKFKRSNQGTCINQRPIVSKGEVVAKETLLADGPSTDLGEIAL 768 Query: 908 PEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE 962 + L+ I E A+ + + ++ S + + R E Sbjct: 769 GKNILMGFITWEGYNYEDAMLISEQLVKEDVFTSIHIEEYEAEARDTKLGPEEITRDIPN 828 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 E +D DE+ I+ R +IL G+ G L + E R Sbjct: 829 VGEEALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR---- 883 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 E KI + GD++PPGV ++V+ ++A KR Sbjct: 884 -------------EVRDTSLRVPHGEAGIIVDVKIFTRENGDELPPGVNKLVRCYIAQKR 930 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E HLG Sbjct: 931 KISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLG 990 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG I + + D DI Sbjct: 991 LAASKLGWHIATPVFDGAIESDIVDCLRKA------------------------------ 1020 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 G E+ G+++LYDG TGEPFD VTVGY+Y+LKL H+ Sbjct: 1021 ----------GYSED--------------GKTVLYDGRTGEPFDNRVTVGYMYILKLAHL 1056 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDV Sbjct: 1057 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDV 1116 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 VGR + YE+IV G + E G PESF VL+KE+QAL L + + N + E + D + Sbjct: 1117 VGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNDDNQEIKLKESV-DEDA 1175 Query: 1383 CELK 1386 EL+ Sbjct: 1176 DELE 1179 >gi|291535404|emb|CBL08516.1| DNA-directed RNA polymerase subunit beta [Roseburia intestinalis M50/1] gi|291537953|emb|CBL11064.1| DNA-directed RNA polymerase subunit beta [Roseburia intestinalis XB6B4] Length = 1298 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 428/964 (44%), Positives = 601/964 (62%), Gaps = 68/964 (7%) Query: 9 GLGRVR---------KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 R+R + + E++++P+LIEVQK SY FL EGL+ F Sbjct: 2 EKNRIRPVKAGKGMRMSYSRQKEVLEMPNLIEVQKDSYQWFL----------KEGLKEVF 51 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPP--KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFT 117 + PI +SG LEFV + K+ + +C RD TYA PLK+ +RL Sbjct: 52 DDISPIADYSGHLSLEFVDFTLCESDVKYTIPECKERDATYAAPLKVKVRLH-------- 103 Query: 118 GAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 K +I E I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++ + GK Sbjct: 104 -NKETDEINEHEIFMGDLPLMTETGTFVINGAERVIVSQLVRSPGIYYGIAHDKV---GK 159 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYP-- 234 LY+C +IP++G W++ E DS D+ +VR+DR RKVP+T + ALG+ + +EI+ F Sbjct: 160 KLYSCTVIPNRGAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGIGTNQEIVDLFGEEP 219 Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKG 292 KI+ S D + + +++ E +I + L K + K Sbjct: 220 KILASFGKDVATNYEEGLLELYKKIRPGEPLTVESAESLISAMFFDPRRYDLAKVGRYKF 279 Query: 293 VKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSV 352 K L + + + G +AED+VN TGEI EAG + ++I ++ +P +++ + Sbjct: 280 NKKL-MLKNRINGHVLAEDVVNLATGEIIAEAGTEVTRSLADDIQNA---AVPYVWIQTE 335 Query: 353 NNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVG 412 N + ++++ D + + ++ + V + +D DL Sbjct: 336 TRNVKVLSSMMVDLRAYVD----CNPKDLGITELVYYPVLAQLME---EHTDIDDLKEAI 388 Query: 413 RVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLK 472 + ++ + +HI K+DI A I + L G G DDID+LGNRR+R+VGE+L+ Sbjct: 389 KKNVHDLIP-------KHITKDDIFASINYNMHLEYGIGNDDDIDHLGNRRIRAVGELLQ 441 Query: 473 NQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSL 532 NQYR+GL R+ER ++ER++++D+D + PQ LIN KPV +AV EFF SSQLSQ + N L Sbjct: 442 NQYRIGLSRLERVVRERMTTLDLDGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPL 501 Query: 533 SRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARV 592 +TH RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL S+AR+ Sbjct: 502 GELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLASYARI 561 Query: 593 NAYGFIETPYRKV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 N YGF+E PYRK+ + +VT++VVY++A EE+N ++AQAN +LD +G F V Sbjct: 562 NEYGFVEAPYRKIDKSDPKNPRVTDEVVYMTADEEDNYHVAQANEALDAEGHFVRNSVSG 621 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R E + D++D SPK V S+A +LIPFL+NDD+NR LMG NMQRQAVPLL + Sbjct: 622 RYREETQEYEKTMFDYMDVSPKMVFSVATALIPFLQNDDANRALMGSNMQRQAVPLLTTD 681 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 AP VGTGME+ A SG ++AK++GIVE ++ +I+I+S EG D +Y+L KF Sbjct: 682 APVVGTGMETKAAVDSGVCVIAKKSGIVESSESNQIIIKSDEGTRD-------VYKLTKF 734 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ+ C NQRP+V GD V ++IADGPST G+LALG+N L+ FM W GYN+ED++ Sbjct: 735 SRSNQSNCYNQRPIVFKGDRVEAGEVIADGPSTSNGELALGKNPLIGFMTWEGYNYEDAV 794 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 L+SER+V +DV+TSIHIEE+E ARDTKLGPEEITRD+P V ++ LK++DE GII +GAE Sbjct: 795 LLSERLVQDDVYTSIHIEEYEAEARDTKLGPEEITRDVPGVGDDALKDLDERGIIRIGAE 854 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R Sbjct: 855 VRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTR 914 Query: 948 HGID 951 D Sbjct: 915 ENGD 918 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 184/592 (31%), Positives = 271/592 (45%), Gaps = 28/592 (4%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISER-MVSEDVFTSIHIEEFEVMARDTKLGP 858 +L P G E + V + E + + G Sbjct: 666 MGSNMQRQAVPLLTTDAPVVGTGMETKAAVDSGVCVIAKKSGIVESSESNQIIIKSDEGT 725 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI-- 916 ++ + ++ I+ G V G+++ + + L+ + Sbjct: 726 RDVYKLTKFSRSNQSNCYNQRPIVFKGDRVEAGEVIADGPSTSNGELALGKNPLIGFMTW 785 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ---IELLARDKDD 973 G D S R+ T + + + D + R+ + +D D Sbjct: 786 EGYNYEDAVLLSERLVQDDVYTSIHIEEYEAEARDTKLGPEEITRDVPGVGDDALKDL-D 844 Query: 974 EQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQR 1033 E+ I+ R +IL G+ G L + E R Sbjct: 845 ERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR--------------- 889 Query: 1034 NVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGR 1093 E + K+ + GD++ PGV + V++++A KR I GDKMAGR Sbjct: 890 --EVRDTSLKVPHGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGR 947 Query: 1094 HGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIK 1153 HGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG I+ Sbjct: 948 HGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNIE 1007 Query: 1154 SLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDG 1213 + + D DI + + + V + D Sbjct: 1008 TPVFDGAKEIDIQDTLELANDYVNMPFDAAEAEKEGKTESFEEKYKDILREDVMKYLSD- 1066 Query: 1214 ADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTG 1273 A ++ + + G+ L DG TGEPFD PVT+G+++ LKL+H+V DK++ARSTG Sbjct: 1067 --NRAHRALWKGVPISRDGKVQLRDGRTGEPFDSPVTIGHMHYLKLHHLVDDKIHARSTG 1124 Query: 1274 SYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIV 1333 YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ Sbjct: 1125 PYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAII 1184 Query: 1334 AGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 G++ E G PESF VL+KE+Q+LGL + + + ME ++ +L Sbjct: 1185 KGDNIPEPGIPESFKVLLKELQSLGLDVKVLDEDRNEVELMET-SEYGNTDL 1235 >gi|260437412|ref|ZP_05791228.1| DNA-directed RNA polymerase, beta subunit [Butyrivibrio crossotus DSM 2876] gi|292810044|gb|EFF69249.1| DNA-directed RNA polymerase, beta subunit [Butyrivibrio crossotus DSM 2876] Length = 1289 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 432/960 (45%), Positives = 589/960 (61%), Gaps = 63/960 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 VR + + E++D+P+LIEVQK SY FL +GL+ F+ + PIT +SG Sbjct: 13 KNVRMSYSRQKEVLDMPNLIEVQKNSYKWFL----------EDGLKEVFEDISPITDYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL K +IKE Sbjct: 63 HLSLEFVDFMLCEDDKKYSIEECKERDATYAAPLKVKVRLY---------NKETDEIKEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT GTFVI G +R++VSQL RSPGI+++ + GK LY+C +IP++ Sbjct: 114 DIFMGDLPLMTATGTFVINGAERVIVSQLVRSPGIYYEIGHDKI---GKTLYSCTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ VR+DR RKVPVT + ALG + +I F KI S D Sbjct: 171 GAWLEYETDSNDVFSVRVDRTRKVPVTVLIRALGFGTNAQIRELFGDEPKIEASIAKDPS 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQV-IESGKKLTSGLLKSLKEKGVKFLGITS---- 300 S + + I GE + ++S + L + + + + +G Sbjct: 231 VTEKSP-NGGYEEGLLELYKKIRPGEPLSVDSAESLINAMFFDPRRYDLAKVGRYKFNKK 289 Query: 301 ----DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 + + G +AED+V+ TGEI AGD + + S I ++ + Sbjct: 290 LNFRNRIWGHKLAEDVVDVTTGEIIASAGDTLTKDSALAIQNAAV--------------P 335 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 YI + K K + ++DI + + + S+ + + +T Sbjct: 336 YIWLAVEDRKVKVLSNMMVDITKHVDITEEEAKSLGIHEAVYYPVLKTILEENTSIDDIK 395 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 + +HI +DIIA I + L G GT DDID+LGNRR+R+VGE+L+NQYR Sbjct: 396 EAIKKNASDLVPKHITVDDIIASINYNIHLEYGVGTKDDIDHLGNRRIRAVGELLQNQYR 455 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GL RMER ++ER+++ D++ PQ LIN KPV +AV EFF SSQLSQ + N LS IT Sbjct: 456 IGLSRMERVVRERMTTQDVEGASPQTLINIKPVTAAVKEFFGSSQLSQFMDQNNPLSEIT 515 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL ++AR+N YG Sbjct: 516 HKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLINSLATYARINEYG 575 Query: 597 FIETPYRKV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 F+E PYR V + +VT +V YL+A EE+N Y+AQAN+ LDE+G F + V R Sbjct: 576 FVEAPYRVVDKTDPKNPRVTEEVRYLTADEEDNYYVAQANAELDENGYFVKNSVSGRYRE 635 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E + KID +D SPK V S+A S+IPFL+NDD+NR LMG NMQRQAVPLL ++ V Sbjct: 636 ETSEFEKSKIDLMDVSPKMVFSVATSMIPFLQNDDANRALMGSNMQRQAVPLLTTDSAVV 695 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTGME A SGA +VA++ G+V++ + IVI +G+ Y+L KF RSN Sbjct: 696 GTGMEYKTAVDSGACVVAEKGGLVDRATSTEIVILEDDGNRHS-------YQLTKFARSN 748 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 Q+ C NQ+P+V GD V D+IADGPST G++ALG+N L+ FM W GYN+ED++L+SE Sbjct: 749 QSNCYNQKPIVTKGDRVEAGDVIADGPSTSNGEIALGKNPLIGFMTWEGYNYEDAVLLSE 808 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+V +DV+TS+HIEE+E ARDTKLGPEEITR++P V E+ LK++DE GII +GAEV G Sbjct: 809 RLVRDDVYTSVHIEEYEAEARDTKLGPEEITREVPGVGEDALKDLDERGIIRIGAEVRAG 868 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G G +VD ++F R D Sbjct: 869 DILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEYGVIVDAKVFTRENGD 928 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 187/581 (32%), Positives = 268/581 (46%), Gaps = 51/581 (8%) Query: 816 MPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKN 875 M + + +++E+ D TS I E G + Sbjct: 699 MEYKTAVDSGACVVAEKGGLVDRATSTEIVILEDD------GNRHSYQLTKFARSNQSNC 752 Query: 876 IDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI--FGEKAVDVRDTSLRVPS 933 ++ I+ G V GD++ + + L+ + G D S R+ Sbjct: 753 YNQKPIVTKGDRVEAGDVIADGPSTSNGEIALGKNPLIGFMTWEGYNYEDAVLLSERLVR 812 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVEREQ---IELLARDKDDEQVILDRNIYSRLMEIL 990 T V + + D + RE E +D DE+ I+ R +IL Sbjct: 813 DDVYTSVHIEEYEAEARDTKLGPEEITREVPGVGEDALKDL-DERGIIRIGAEVRAGDIL 871 Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050 G+ G L + E R E Sbjct: 872 VGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRDTSLRVPHGEYG 914 Query: 1051 DRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMP 1110 K+ + GDD+ PGV + V++++A KR I GDKMAGRHGNKG+VSRILP EDMP Sbjct: 915 VIVDAKVFTRENGDDLNPGVNQSVRIYIAQKRKISVGDKMAGRHGNKGVVSRILPVEDMP 974 Query: 1111 FLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRS 1170 +L +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG KI + + D DI Sbjct: 975 YLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAARALGFKISTPVFDGANEKDIMDTLD 1034 Query: 1171 FLEKVIGTG--SHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADL 1228 + EK ++ ++ + + + + Sbjct: 1035 LANDYVNLEWDEFKEKWDGKINEELMEYLGEHL----------------DHRAEWKGVPI 1078 Query: 1229 DESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1079 SRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQ 1138 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ G++ E G PESF Sbjct: 1139 FGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGDNIPEPGIPESFK 1198 Query: 1349 VLVKEMQALGLSIDLENSRTKNSAKMEEI----PDFNKCEL 1385 VL++E+++L L + + + E I D + +L Sbjct: 1199 VLLEELRSLALDVKVLDENGDEVDIKENIGYAESDTSHEDL 1239 >gi|312865581|ref|ZP_07725807.1| DNA-directed RNA polymerase, beta subunit [Streptococcus downei F0415] gi|311098909|gb|EFQ57127.1| DNA-directed RNA polymerase, beta subunit [Streptococcus downei F0415] Length = 1193 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 429/963 (44%), Positives = 594/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------ENGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTETMELEFVGYELKEPKYSLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EIL F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEILDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE +S + L + + + +G Sbjct: 219 NTIEKDI-HKNPADARTDEALKEIYERLRPGEPKTADSSRSLLTARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+GETGEI +EAG V+ ++ I + + Sbjct: 278 YKINKKLNVKTRLLNQTLAENLVDGETGEILVEAGTVMTRDVIDSIAEALD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N+ Y N D + +L ++V+ P D ++ Sbjct: 330 GLNSFVYTPN----DYAVVTEPVILQKFKVVSPLDADKV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGNS--------NPDDKVRALTPADILAEMSYFLNLAQGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D +++ PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLTRMERNVRERMSVQDNEALTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV KVTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRSTGKVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFAASTVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PFVGTGMEYQAAHDSGAAVIAQHPGRVTFSDAEKVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD+V + D IADGPS + G++ALGRN +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDQVEKGDFIADGPSMEKGEMALGRNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G +G V DV+IF R Sbjct: 833 EEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGAGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 172/508 (33%), Positives = 236/508 (46%), Gaps = 79/508 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG +V GD + + + M + A + + D + V V Sbjct: 725 LVKVGDQVEKGDFIADGPS-MEKGEMALGRNPIVAYMTWEGYNFEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQI----ELLARDKDDEQVILDRNIYSRLMEILCGQN 994 + + + E +I E +D DE I+ +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDL-DEMGIIRIGAEVEEGDILVGKV 842 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K L + + R +V+ + + Sbjct: 843 TPKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGAGIVRDV----- 886 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L D Sbjct: 887 -KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPD 945 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D + D+ Sbjct: 946 GTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGATSEDLWETVEEAGM 1005 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 T ++DG Sbjct: 1006 DSDAK----------------------------TVLYDG--------------------- 1016 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL+HMV DK++ARSTG YSLVTQQPLGGK+ GGQR Sbjct: 1017 -----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRF 1071 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+ Sbjct: 1072 GEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKEL 1131 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNK 1382 Q+LGL + + + + + Sbjct: 1132 QSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|312622901|ref|YP_004024514.1| DNA-directed RNA polymerase subunit beta [Caldicellulosiruptor kronotskyensis 2002] gi|312203368|gb|ADQ46695.1| DNA-directed RNA polymerase, beta subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 1228 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 432/959 (45%), Positives = 600/959 (62%), Gaps = 60/959 (6%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 V G R +GK E++D+P L+E+QK S+ FL +EGL+ + + PI Sbjct: 7 VQYG-KVQRMSYGKVKEVLDLPYLLEIQKKSFQWFL----------DEGLREVLREISPI 55 Query: 66 TAFSGAAMLEFVSYEF-DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKD 124 +S +LEFV Y F PPK+ +C RD TYA PLK+ +RLI K + Sbjct: 56 KDYSETLLLEFVDYYFDGPPKYSEQECKERDATYARPLKVKVRLI---------NKETGE 106 Query: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRI 184 IKEQ IYMG+ P+MT+ GTF+I G +R++VSQL RSPG +F + G+ +++ + Sbjct: 107 IKEQDIYMGEFPIMTETGTFIINGAERVIVSQLIRSPGCYFASSIDKQ---GRKIFSGTL 163 Query: 185 IPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALG-MDSEEILSTFYPKIVYSQRGD 243 IP++G W++ E D+ +++ VR+DR RKV +T+ L A G + + I F + Sbjct: 164 IPNRGAWLEFETDTSELLSVRLDRTRKVSLTTLLKAFGLYNQQMIFEKFGEDERLKASLE 223 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS-- 300 + + A + + GE +E+ + L + + + +G Sbjct: 224 KEANKGELGNPVENA-LLEVYRRLRPGEPPNVENARNLLYNMFFDPRRYDLAKVGRYKFN 282 Query: 301 ------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 + A+D+V+ +TGEI ++ G++I + +I + I ++ + + Sbjct: 283 KKLSLWKRIFNKRAAQDVVDPKTGEILVKEGELITREIATQIQDAGINEVWVYADEERPF 342 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 NT+ D+ + + L I + D + V + Sbjct: 343 KVVGNNTVKLDRYVEFDVSDLHIK---------------ELVYKPVLDDILNTTNDVLEI 387 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 K +R + + +DI A + L+ G GT DDID+LGNRRVR+VGE+L+NQ Sbjct: 388 KRLIR-ERERELVPYCLTIDDIFAATSYFLGLKYGIGTTDDIDHLGNRRVRAVGELLQNQ 446 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL RMER I+ER++ DID+V PQ LIN +PV +A+ EFF SS LSQ + VN L+ Sbjct: 447 FRIGLARMERVIRERMNIHDIDTVTPQTLINIRPVTAAIKEFFGSSPLSQFMDQVNPLAA 506 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +T+ RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++ARVN Sbjct: 507 LTNKRRLSALGPGGLSRDRAGFEVRDVHHSHYGRMCPIETPEGPNIGLITSLATYARVNE 566 Query: 595 YGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGE 652 YGF+ETPYRKV + +VTN+VVYL+A EE+ IAQA +DE+G F + V R E Sbjct: 567 YGFLETPYRKVDKKEARVTNEVVYLTADEEDTYKIAQATEPVDEEGRFINQRVTVRFGEE 626 Query: 653 EILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVG 712 I V + ++D ID SPKQ+VS++ SLIPFLENDD+NR LMG NMQRQAVPLL E+P +G Sbjct: 627 IIEVDKHEVDLIDISPKQIVSVSTSLIPFLENDDANRALMGSNMQRQAVPLLMTESPIIG 686 Query: 713 TGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 TG+E A SG I+AK+ G+VE+V A IVIR+ +G D +Y L+KF+R+NQ Sbjct: 687 TGVEYRAAVDSGVCILAKKDGVVEKVSADEIVIRNNDGTKD-------VYHLLKFKRTNQ 739 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 TC NQRP+V+ G EV+ ++IADGPSTD G+LALG+N+LVAFMPW GYN+ED++LISER Sbjct: 740 GTCFNQRPIVRKGQEVKAGEVIADGPSTDHGELALGKNVLVAFMPWEGYNYEDAILISER 799 Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ +K++DE GII +GAEV GD Sbjct: 800 LVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGEDAIKDLDERGIIRIGAEVKSGD 859 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 ILVGK+TPKGE+ +T EE+LLRAIFGEKA + RDTSLRVP G G VVDV++F+R D Sbjct: 860 ILVGKVTPKGETELTAEERLLRAIFGEKARETRDTSLRVPHGEGGIVVDVKVFSRDKGD 918 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 163/538 (30%), Positives = 234/538 (43%), Gaps = 79/538 (14%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 G +++ + ++ I+ G EV G+++ + + + + Sbjct: 720 RNNDGTKDVYHLLKFKRTNQGTCFNQRPIVRKGQEVKAGEVIADGPST-DHGELALGKNV 778 Query: 913 LRAIFGEKAVDVRDTSLRVPS------GVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 L A + + D L S + + R E E Sbjct: 779 LVAFMPWEGYNYEDAILISERLVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGED 838 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 +D DE+ I+ + +IL G+ G L + E R Sbjct: 839 AIKDL-DERGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRAIFGEKAR-------- 889 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 E+ K+ GD++PPGV ++V+V+VA KR I Sbjct: 890 ---------ETRDTSLRVPHGEGGIVVDVKVFSRDKGDELPPGVNQLVRVYVAQKRKISV 940 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNK GV SR+ Sbjct: 941 GDKMAGRHGNK----------------------------GVISRI--------------- 957 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 ++ + ++ V+ +++ G V Sbjct: 958 ---LPVEDMPFLPDGTP--------VDIVLNPLGVPSRMNIGQILETHLGYAAKALGWKV 1006 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA EE I L++A L+ +G++ILYDG TGEPFD VTVGY+YMLKL H+V DK Sbjct: 1007 ATPVFDGAKEEDIEEALKLAGLNPTGKTILYDGRTGEPFDNEVTVGYMYMLKLVHLVDDK 1066 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDV GR Sbjct: 1067 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVTGRV 1126 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 + YE+IV G + E G PESF VLVKE+Q+L L + L + + E + + + + Sbjct: 1127 KTYEAIVKGENIPEPGIPESFKVLVKELQSLCLDVKLLSENNEEIELKESVDEDEQPQ 1184 >gi|312862392|ref|ZP_07722635.1| DNA-directed RNA polymerase, beta subunit [Streptococcus vestibularis F0396] gi|322515918|ref|ZP_08068859.1| DNA-directed RNA polymerase subunit beta [Streptococcus vestibularis ATCC 49124] gi|311102035|gb|EFQ60235.1| DNA-directed RNA polymerase, beta subunit [Streptococcus vestibularis F0396] gi|322125592|gb|EFX96922.1| DNA-directed RNA polymerase subunit beta [Streptococcus vestibularis ATCC 49124] Length = 1193 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 426/963 (44%), Positives = 589/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKEFL----------DTGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE +S + L + + +G Sbjct: 219 NTVEKDI-HKNPADSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L G +AE++V+ ETGEI +EAG + ++ I D+ Sbjct: 278 YKVNKKLNIKTRLLGQTIAENLVDPETGEILVEAGTEMTRDVIDSIAEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVAPNDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTTADILAEMSYFLNLAEGIGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV KVTN+VV+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGKVTNEVVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEYPSHLVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVVYSDADKVEVRREDGSLD-------VYTIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMEGGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EEFE RDTKLGPEEITR++PNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEFESETRDTKLGPEEITRELPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 169/508 (33%), Positives = 237/508 (46%), Gaps = 79/508 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + +G M + + A + + D + V V Sbjct: 725 LVKVGDIVEKGDFIADGPSMEG-GEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER------EQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 + + + E E +D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITRELPNVGEEALKDL-DEMGIIRIGAEVKEGDILVGKV 842 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K L + + R +V+ + + + Sbjct: 843 TPKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV----- 886 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L D Sbjct: 887 -KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPD 945 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 946 GTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM 1005 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 + ++L G Sbjct: 1006 -----------------------------------------DSDAKTIL------YDG-- 1016 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1017 -----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRF 1071 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGA+ +LQE+LT KSDDV GR + YE+I G + G PESF VLVKE+ Sbjct: 1072 GEMEVWALEAYGASNILQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKEL 1131 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNK 1382 Q+LGL + + + + + Sbjct: 1132 QSLGLDMRVLDEDDHEVELRDLDEGEDD 1159 >gi|150392168|ref|YP_001322217.1| DNA-directed RNA polymerase subunit beta [Alkaliphilus metalliredigens QYMF] gi|182676549|sp|A6TWJ0|RPOB_ALKMQ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|149952030|gb|ABR50558.1| DNA-directed RNA polymerase, beta subunit [Alkaliphilus metalliredigens QYMF] Length = 1246 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 436/962 (45%), Positives = 601/962 (62%), Gaps = 66/962 (6%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 V G VR + + E++D+P+LIE+QK +YD FL +EGL+ F + Sbjct: 3 HPVQLGKK-VRMSYSQINEVLDMPNLIELQKEAYDWFL----------DEGLREVFNDIS 51 Query: 64 PITAFSGAAMLEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 PI ++G +LEFV Y D PK+DV + RD TYA PLK+ +RLI K Sbjct: 52 PIQDYTGNLILEFVDYSLDENPKYDVGESKERDATYAAPLKVKVRLI---------NKET 102 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 ++KEQ ++MGD PLMT GTF+I G +R++VSQL RSPG++++ + GK LY+ Sbjct: 103 GEVKEQEVFMGDFPLMTDTGTFIINGAERVIVSQLVRSPGVYYNRQFDKT---GKQLYSA 159 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQR 241 +IP++G W++ E DS D++ VR+DR RK P T L ALG ++ +I Sbjct: 160 TVIPNRGAWLEYETDSNDVVSVRVDRTRKQPATVLLRALGYGTDQQIKDLLGEDERILAT 219 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGE-QVIESGKKLTSGLLKSLKEKGVKFLGITS 300 + + L+ K + GE IES L + L K + +G Sbjct: 220 LEKDNTKTAEEGLLEIYK------KLRPGEPPTIESATSLINTLFFDAKRYDLAKVGRYK 273 Query: 301 --------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSV 352 + + AE++ + +TGEI +E G ID + I +S I ++ + Y + Sbjct: 274 FSKKLSLANRIMSHKAAENVSDPQTGEILVEEGTKIDREISLLIQNSGINEVHV-YSEEN 332 Query: 353 NNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVG 412 I N V K D + ++ + + V + D +D Sbjct: 333 KKIKVIGNHFVDIKTHIDFD-----IQDLKLRERVYYPVLREIL-------DTFDSEAEI 380 Query: 413 RVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLK 472 + + R P +HI K DI+A I +L + G +DDID+LGNRR+RSVGE+L+ Sbjct: 381 KEALKERKRELIP---KHILKSDIVASINYAFNLAHEIGNVDDIDHLGNRRLRSVGELLQ 437 Query: 473 NQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSL 532 NQ+R+GL RMER +KER++ D+D V PQ LIN +PV +++ EFF SSQLSQ + N L Sbjct: 438 NQFRIGLSRMERVVKERMTIQDVDLVTPQALINIRPVAASIKEFFGSSQLSQFMDQTNPL 497 Query: 533 SRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARV 592 + +TH RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+S+AR+ Sbjct: 498 AELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSSYARI 557 Query: 593 NAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-C 649 N YGFIE+PYRKV + VT D+ YL+A EE+ IAQAN LDE+G F + V R Sbjct: 558 NEYGFIESPYRKVDKKRDVVTTDIEYLTADEEDLFIIAQANEPLDEEGKFGNKRVTSRTK 617 Query: 650 AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAP 709 G +VP +++D++D SPKQVVS+A ++IPFLENDD+NR LMG NMQRQAVPLL +AP Sbjct: 618 FGGIDVVPFDEVDYMDVSPKQVVSVATAMIPFLENDDANRALMGSNMQRQAVPLLITDAP 677 Query: 710 FVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 +GTGME AK SG +VA+ +GIV+ V + IV++ +G D Y+L+KF+R Sbjct: 678 IIGTGMEYKAAKDSGVVVVARNSGIVDYVASNEIVVKLEDGQKD-------RYKLLKFKR 730 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 SNQ TC+NQ+P+V G+ + D+IADGPSTD G++ALGRN LV FM W GYNFED++LI Sbjct: 731 SNQGTCINQKPIVSKGERIEAGDVIADGPSTDRGEIALGRNCLVGFMAWEGYNFEDAILI 790 Query: 830 SERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVN 889 +E++V ED T+IHIEE+E ARDTKLGPEEITRDIPNV E+ LK++DE G+I +GAEV Sbjct: 791 NEKLVKEDALTTIHIEEYESEARDTKLGPEEITRDIPNVGEDSLKDLDERGVIRIGAEVE 850 Query: 890 PGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHG 949 GDILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G +G +VD+++F R Sbjct: 851 SGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGENGIIVDIKVFTREN 910 Query: 950 ID 951 D Sbjct: 911 GD 912 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 241/1209 (19%), Positives = 415/1209 (34%), Gaps = 143/1209 (11%) Query: 223 MDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQV--------- 273 IL + + + D A KV L++ +TGE Sbjct: 56 YTGNLILEFVDYSLDENPKYDVGESKERDATYAAPLKVKVRLINKETGEVKEQEVFMGDF 115 Query: 274 ---IESGKKLTSGLLKSLKEKGVKFLGITSDCLC---GLYVAEDIVNGETG--------- 318 ++G + +G + + + V+ G+ + G + V G Sbjct: 116 PLMTDTGTFIINGAERVIVSQLVRSPGVYYNRQFDKTGKQLYSATVIPNRGAWLEYETDS 175 Query: 319 -EIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDI 377 ++ D ++ + + D + + I TL D K ++ LL+I Sbjct: 176 NDVVSVRVDRTRKQPATVLLRALGYGTDQQIKDLLGEDERILATLEKDNTKTAEEGLLEI 235 Query: 378 YRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDII 437 Y+ +RPG+ T A S+ N LFFD+ +YDL+ VGR K + +L+L + Sbjct: 236 YKKLRPGEPPTIESATSLINTLFFDAKRYDLAKVGRYKFSKKLSLA--------NRIMSH 287 Query: 438 AIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDS 497 + + D + G+ +++ + + N+ + ++ VDI + Sbjct: 288 KAAENVSDPQTGEILVEEGTKIDREISLLIQNSGINEVHVYSEENKKIKVIGNHFVDIKT 347 Query: 498 VMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITH--TRRLSALGQGGVARARAG 555 + D+ + K + E L ++ + +S + I R L + ++ Sbjct: 348 HIDFDIQDLK-----LRERVYYPVLREILDTFDSEAEIKEALKERKRELIPKHILKSDIV 402 Query: 556 VEMRDVHPT--HYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTND 613 + G + + + V L + + R V + D Sbjct: 403 ASINYAFNLAHEIGNVDDIDHLGNRRLRSVGELL---QNQFRIGLSRMERVVKERMTIQD 459 Query: 614 VVYLSAMEEENRYIAQANSS----------LDEDGSFTEELVFCRC---------AGEEI 654 V ++ N A+ + + EL R + E Sbjct: 460 VDLVTPQALINIRPVAASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERA 519 Query: 655 LVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGT 713 + + I + + S + + + V T Sbjct: 520 GFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSSYARINEYGFIESPYRKVDKKRDVVTT 579 Query: 714 GMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQN 773 +E + A I+A+ + + + V V + + + + Sbjct: 580 DIEYLTADEEDLFIIAQ--ANEPLDEEGKFGNKRVTSRTKFGGIDVVPFDEVDYM----D 633 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 Q V + A+ +L+ P G E + Sbjct: 634 VSPKQVVSVATAMIPFLENDDANRALMGSNMQRQAVPLLITDAPIIGTGMEYKAAKDSGV 693 Query: 834 VSEDVFTSIH-IEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 V + I + + G ++ + + I++ I+ G + GD Sbjct: 694 VVVARNSGIVDYVASNEIVVKLEDGQKDRYKLLKFKRSNQGTCINQKPIVSKGERIEAGD 753 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDK 952 ++ + + L + + D L V + + + Sbjct: 754 VIADGPSTDR-GEIALGRNCLVGFMAWEGYNFEDAILINEKLVKEDALTTIHIEEYESEA 812 Query: 953 NERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSD- 1011 + + E E + +D LD R+ + + + G K T L+++ Sbjct: 813 RDTKLGPE-EITRDIPNVGEDSLKDLDERGVIRIGAEVESGDILVGKVTPKGETELTAEE 871 Query: 1012 -LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGV 1070 L+ + + KV + V K+ + GD++PPGV Sbjct: 872 RLLRAIFGEKAREVRDTSLKVPHGENGIIV-------------DIKVFTRENGDELPPGV 918 Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130 +V+V++A K+ I Sbjct: 919 NELVRVYIAKKKKI---------------------------------------------- 932 Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190 NVG G K + + + LE V+ +++ Sbjct: 933 -NVG-------DKMAGRHGNKGVISRILPQEDMPFLEDGTPLEIVLNPLGVPSRMNIGQI 984 Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250 V G V+TPVFDGA+E I L + G+ L DG TGE FD PVT Sbjct: 985 LEVHLGLAAKALGWKVATPVFDGANEFDIMDALEESGYPRGGKLKLQDGRTGEAFDNPVT 1044 Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310 VGY+YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ Sbjct: 1045 VGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHT 1104 Query: 1311 LQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKN 1370 LQE+LT+KSDDVVGR + YE IV G + E G PESF VL+KE+Q+L L + + Sbjct: 1105 LQEILTVKSDDVVGRVKTYECIVKGENIPEPGVPESFKVLIKELQSLCLDVKVLTDDDHE 1164 Query: 1371 SAKMEEIPD 1379 E I D Sbjct: 1165 LEIKETIDD 1173 >gi|327459627|gb|EGF05973.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK1] Length = 1188 Score = 838 bits (2164), Expect = 0.0, Method: Composition-based stats. Identities = 419/963 (43%), Positives = 581/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EIL F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEILDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLDARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLSVKTRLLNQTIAEPLVDAETGEILVEAGTVMTRSVIDSIAEQLN--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N L ++V+ P D Sbjct: 330 GLNKITYIPNDSAVLTAPVE----LQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRIVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+E G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEKGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y++ KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYQIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1234), Expect = e-132, Method: Composition-based stats. Identities = 168/507 (33%), Positives = 237/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|289804191|ref|ZP_06534820.1| DNA-directed RNA polymerase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 871 Score = 838 bits (2164), Expect = 0.0, Method: Composition-based stats. Identities = 473/878 (53%), Positives = 631/878 (71%), Gaps = 13/878 (1%) Query: 322 IEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVM 381 A + L ++ S + I L+ + +++ YI T+ D DR AL++IYR+M Sbjct: 1 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRLSALVEIYRMM 60 Query: 382 RPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIK 441 RPG+ T AES+F LFF D+YDLS VGR+K N L D + + K+DII ++K Sbjct: 61 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGILSKDDIIDVMK 120 Query: 442 ILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQ 501 L+D+RNGKG +DDID+LGNRR+RSVGEM +NQ+R+GL+R+ER++KER+S D+D++MPQ Sbjct: 121 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ 180 Query: 502 DLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDV 561 D+INAKP+ +AV EFF SSQLSQ + N LS ITH RR+SALG GG+ R RAG E+RDV Sbjct: 181 DMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV 240 Query: 562 HPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAME 621 HPTHYGR+CP ET EG NIGL++SL+ +A+ N YGF+ETPYR+V DG VT+++ YLSA+E Sbjct: 241 HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVTDEIHYLSAIE 300 Query: 622 EENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPF 681 E N IAQANS+LD++G F E+LV CR GE L R+++D++D S +QVVS+ ASLIPF Sbjct: 301 EGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 360 Query: 682 LENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAI 741 LE+DD+NR LMG NMQRQAVP L+A+ P VGTGME VA SG VAKR G V+ VDA Sbjct: 361 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGTVQYVDAS 420 Query: 742 RIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTD 801 RIVI+ E ++ P +G+DIY L K+ RSNQNTC+NQ P V +G+ V R D++ADGPSTD Sbjct: 421 RIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTD 480 Query: 802 LGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEI 861 LG+LALG+NM VAFMPW+GYNFEDS+L+SER+V ED FT+IHI+E ++RDTKLGPEEI Sbjct: 481 LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI 540 Query: 862 TRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKA 921 T DIPNV E L +DE GI+ +GAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA Sbjct: 541 TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 600 Query: 922 VDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRN 981 DV+D+SLRVP+GVSGTV+DV++F R G++K++R++ +E Q++ +D +E IL+ Sbjct: 601 SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 660 Query: 982 IYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQ 1041 ++SR+ +L ++ + + PR +W + + DE+ Q +E L Q Sbjct: 661 LFSRIRAVLVSGGV-------------EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 707 Query: 1042 YETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVS 1101 Y+ K E + + K KI GDD+ PGVL++VKV++A+KR IQ GDKMAGRHGNKG++S Sbjct: 708 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 767 Query: 1102 RILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKA 1161 +I P EDMP+ ++GTPVDIVLNPLGVPSRMN+GQI ETHLG A G+G KI +++ + Sbjct: 768 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 827 Query: 1162 NGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQ 1199 + + +S + DD VLR+A + Sbjct: 828 VAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLARK 865 >gi|240146975|ref|ZP_04745576.1| DNA-directed RNA polymerase, beta subunit [Roseburia intestinalis L1-82] gi|257200890|gb|EEU99174.1| DNA-directed RNA polymerase, beta subunit [Roseburia intestinalis L1-82] Length = 1298 Score = 838 bits (2164), Expect = 0.0, Method: Composition-based stats. Identities = 428/964 (44%), Positives = 601/964 (62%), Gaps = 68/964 (7%) Query: 9 GLGRVR---------KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 R+R + + E++++P+LIEVQK SY FL EGL+ F Sbjct: 2 EKNRIRPVKAGKGMRMSYSRQKEVLEMPNLIEVQKDSYQWFL----------KEGLKEVF 51 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPP--KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFT 117 + PI +SG LEFV + K+ + +C RD TYA PLK+ +RL Sbjct: 52 DDISPIADYSGHLSLEFVDFTLCESDVKYTIPECKERDATYAAPLKVKVRLH-------- 103 Query: 118 GAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 K +I E I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++ + GK Sbjct: 104 -NKETDEINEHEIFMGDLPLMTETGTFVINGAERVIVSQLVRSPGIYYGIAHDKV---GK 159 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYP-- 234 LY+C +IP++G W++ E DS D+ +VR+DR RKVP+T + ALG+ + +EI+ F Sbjct: 160 KLYSCTVIPNRGAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGIGTNQEIVDLFGEEP 219 Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKG 292 KI+ S D + + +++ E +I + L K + K Sbjct: 220 KILASFGKDVATNYEEGLLELYKKIRPGEPLTVESAESLISAMFFDPRRYDLAKVGRYKF 279 Query: 293 VKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSV 352 K L + + + G +AED+VN TGEI EAG + ++I ++ +P +++ + Sbjct: 280 NKKL-MLKNRINGHVLAEDVVNLATGEIIAEAGTEVTRSLADDIQNA---AVPYVWIQTE 335 Query: 353 NNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVG 412 N + ++++ D + + ++ + V + +D DL Sbjct: 336 TRNVKVLSSMMVDLRAYVD----CNPKDLGITELVYYPVLAQLME---EHTDIDDLKEAI 388 Query: 413 RVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLK 472 + ++ + +HI K+DI A I + L G G DDID+LGNRR+R+VGE+L+ Sbjct: 389 KKNVHDLIP-------KHITKDDIFASINYNMHLEYGIGNDDDIDHLGNRRIRAVGELLQ 441 Query: 473 NQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSL 532 NQYR+GL R+ER ++ER++++D+D + PQ LIN KPV +AV EFF SSQLSQ + N L Sbjct: 442 NQYRIGLSRLERVVRERMTTLDLDGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPL 501 Query: 533 SRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARV 592 +TH RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL S+AR+ Sbjct: 502 GELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLASYARI 561 Query: 593 NAYGFIETPYRKV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 N YGF+E PYRK+ + +VT++VVY++A EE+N ++AQAN +LD +G F V Sbjct: 562 NEYGFVEAPYRKIDKSDPKNPRVTDEVVYMTADEEDNYHVAQANEALDAEGHFVRNSVSG 621 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R E + D++D SPK V S+A +LIPFL+NDD+NR LMG NMQRQAVPLL + Sbjct: 622 RYREETQEYEKTMFDYMDVSPKMVFSVATALIPFLQNDDANRALMGSNMQRQAVPLLTTD 681 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 AP VGTGME+ A SG ++AK++GIVE ++ +I+I+S EG D +Y+L KF Sbjct: 682 APVVGTGMETKAAVDSGVCVIAKKSGIVESSESNQIIIKSDEGTRD-------VYKLTKF 734 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ+ C NQRP+V GD V ++IADGPST G+LALG+N L+ FM W GYN+ED++ Sbjct: 735 SRSNQSNCYNQRPIVFKGDRVEAGEVIADGPSTSNGELALGKNPLIGFMTWEGYNYEDAV 794 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 L+SER+V +DV+TSIHIEE+E ARDTKLGPEEITRD+P V ++ LK++DE GII +GAE Sbjct: 795 LLSERLVQDDVYTSIHIEEYEAEARDTKLGPEEITRDVPGVGDDALKDLDERGIIRIGAE 854 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R Sbjct: 855 VRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTR 914 Query: 948 HGID 951 D Sbjct: 915 ENGD 918 Score = 533 bits (1372), Expect = e-148, Method: Composition-based stats. Identities = 184/592 (31%), Positives = 271/592 (45%), Gaps = 28/592 (4%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISER-MVSEDVFTSIHIEEFEVMARDTKLGP 858 +L P G E + V + E + + G Sbjct: 666 MGSNMQRQAVPLLTTDAPVVGTGMETKAAVDSGVCVIAKKSGIVESSESNQIIIKSDEGT 725 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI-- 916 ++ + ++ I+ G V G+++ + + L+ + Sbjct: 726 RDVYKLTKFSRSNQSNCYNQRPIVFKGDRVEAGEVIADGPSTSNGELALGKNPLIGFMTW 785 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ---IELLARDKDD 973 G D S R+ T + + + D + R+ + +D D Sbjct: 786 EGYNYEDAVLLSERLVQDDVYTSIHIEEYEAEARDTKLGPEEITRDVPGVGDDALKDL-D 844 Query: 974 EQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQR 1033 E+ I+ R +IL G+ G L + E R Sbjct: 845 ERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR--------------- 889 Query: 1034 NVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGR 1093 E + K+ + GD++ PGV + V++++A KR I GDKMAGR Sbjct: 890 --EVRDTSLKVPHGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGR 947 Query: 1094 HGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIK 1153 HGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG I+ Sbjct: 948 HGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNIE 1007 Query: 1154 SLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDG 1213 + + D DI + + + V + D Sbjct: 1008 TPVFDGAKEIDIQDTLELANDYVNMPFDAAEAEKEGKTENFEEKYKDILREDVMKYLSD- 1066 Query: 1214 ADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTG 1273 A ++ + + G+ L DG TGEPFD PVT+G+++ LKL+H+V DK++ARSTG Sbjct: 1067 --NRAHRALWKGVPISRDGKVQLRDGRTGEPFDSPVTIGHMHYLKLHHLVDDKIHARSTG 1124 Query: 1274 SYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIV 1333 YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ Sbjct: 1125 PYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAII 1184 Query: 1334 AGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 G++ E G PESF VL+KE+Q+LGL + + + ME ++ +L Sbjct: 1185 KGDNIPEPGIPESFKVLLKELQSLGLDVKVLDEDRNEVELMET-SEYGNTDL 1235 >gi|312128088|ref|YP_003992962.1| DNA-directed RNA polymerase subunit beta [Caldicellulosiruptor hydrothermalis 108] gi|311778107|gb|ADQ07593.1| DNA-directed RNA polymerase, beta subunit [Caldicellulosiruptor hydrothermalis 108] Length = 1230 Score = 838 bits (2164), Expect = 0.0, Method: Composition-based stats. Identities = 430/959 (44%), Positives = 602/959 (62%), Gaps = 60/959 (6%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 V G R +GK E++D+P L+E+QK S+ FL +EGL+ + + PI Sbjct: 7 VQYG-KVQRMSYGKVKEVLDLPYLLEIQKKSFQWFL----------DEGLREVLREISPI 55 Query: 66 TAFSGAAMLEFVSYEF-DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKD 124 +S +LEFV Y F PPK+ +C RD TYA PLK+ +RLI K + Sbjct: 56 KDYSETLLLEFVDYYFDGPPKYSEQECKERDATYARPLKVKVRLI---------NKETGE 106 Query: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRI 184 IKEQ IYMG+ P+MT+ GTF+I G +R++VSQL RSPG +F + G+ +++ + Sbjct: 107 IKEQDIYMGEFPIMTETGTFIINGAERVIVSQLIRSPGCYFASSIDKQ---GRKIFSGTL 163 Query: 185 IPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALG-MDSEEILSTFYPKIVYSQRGD 243 IP++G W++ E D+ +++ VR+DR RKV +T+ L A G + + I F + Sbjct: 164 IPNRGAWLEFETDASELLSVRLDRTRKVSLTTLLKAFGLYNQQMIFEKFGEDERLKASLE 223 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS-- 300 + + A + + GE +E+ + L + + + +G Sbjct: 224 KEANKGELGNPVENA-LLEVYRRLRPGEPPNVENARNLLYNMFFDPRRYDLAKVGRYKFN 282 Query: 301 ------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 + A+D+V+ TGEI ++ G+VI + +I + I ++ + + Sbjct: 283 KKLSLWKRIFNKRAAQDVVDPRTGEILVKEGEVITREIATQIQDAGINEVWVYADEEREF 342 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 NT+ D+ + + L+I ++ + + D+S + R+ Sbjct: 343 KVVGNNTVKLDRYVEFDVSDLNIKELVYKPVLEDILKTTN------------DVSEIKRL 390 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DI A + L+ G GT DDID+LGNRRVR+VGE+L+NQ Sbjct: 391 IKER----ERELVPYCLTIDDIFAATSYFLGLKYGIGTTDDIDHLGNRRVRAVGELLQNQ 446 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL RMER I+ER++ DID+V PQ LIN +PV +A+ EFF SS LSQ + VN L+ Sbjct: 447 FRIGLARMERVIRERMNIHDIDTVTPQTLINIRPVTAAIKEFFGSSPLSQFMDQVNPLAA 506 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +T+ RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++ARVN Sbjct: 507 LTNKRRLSALGPGGLSRDRAGFEVRDVHHSHYGRMCPIETPEGPNIGLITSLATYARVNE 566 Query: 595 YGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGE 652 YGF+ETPYRKV + +VT++VVYL+A EE+ IAQA +DE+G F + V R E Sbjct: 567 YGFLETPYRKVDKKEARVTDEVVYLTADEEDTYRIAQATEPVDEEGRFINQRVTVRFGEE 626 Query: 653 EILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVG 712 I V + ++D ID SPKQ+VS++ SLIPFLENDD+NR LMG NMQRQAVPLL E+P +G Sbjct: 627 IIEVDKHEVDLIDISPKQIVSVSTSLIPFLENDDANRALMGSNMQRQAVPLLTTESPIIG 686 Query: 713 TGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 TG+E A SG I+AK+ G+VE+V A IVIR+ +G D +Y L+KF+R+NQ Sbjct: 687 TGVEYRAAVDSGVCILAKKDGVVEKVSADEIVIRNNDGTKD-------VYHLLKFKRTNQ 739 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 TC NQRP+V+ G E++ ++IADGPSTD G+LALG+N+LVAFMPW GYN+ED++LISER Sbjct: 740 GTCFNQRPIVRKGQEIKAGEVIADGPSTDHGELALGKNVLVAFMPWEGYNYEDAILISER 799 Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ +K++DE GII +GAEV GD Sbjct: 800 LVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGEDAIKDLDERGIIRIGAEVKSGD 859 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 ILVGK+TPKGE+ +T EE+LLRAIFGEKA + RDTSLRVP G G VVDV++F+R D Sbjct: 860 ILVGKVTPKGETELTAEERLLRAIFGEKARETRDTSLRVPHGEGGIVVDVKVFSRDKGD 918 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 163/538 (30%), Positives = 233/538 (43%), Gaps = 79/538 (14%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 G +++ + ++ I+ G E+ G+++ + + + + Sbjct: 720 RNNDGTKDVYHLLKFKRTNQGTCFNQRPIVRKGQEIKAGEVIADGPST-DHGELALGKNV 778 Query: 913 LRAIFGEKAVDVRDTSLRVPS------GVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 L A + + D L S + + R E E Sbjct: 779 LVAFMPWEGYNYEDAILISERLVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGED 838 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 +D DE+ I+ + +IL G+ G L + E R Sbjct: 839 AIKDL-DERGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRAIFGEKAR-------- 889 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 E+ K+ GD++PPGV ++V+V+VA KR I Sbjct: 890 ---------ETRDTSLRVPHGEGGIVVDVKVFSRDKGDELPPGVNQLVRVYVAQKRKISV 940 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNK GV SR+ Sbjct: 941 GDKMAGRHGNK----------------------------GVISRI--------------- 957 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 ++ + ++ V+ +++ G V Sbjct: 958 ---LPVEDMPFLPDGTP--------VDIVLNPLGVPSRMNIGQILETHLGYAAKALGWKV 1006 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA EE I L++A L +G++ILYDG TGEPFD VTVGY+YMLKL H+V DK Sbjct: 1007 ATPVFDGAKEEDIEEALKLAGLKPTGKTILYDGRTGEPFDNEVTVGYMYMLKLVHLVDDK 1066 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDV GR Sbjct: 1067 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVTGRV 1126 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 + YE+IV G + E G PESF VLVKE+Q+L L + L + K E + + + + Sbjct: 1127 KTYEAIVKGENIPEPGIPESFKVLVKELQSLCLDVKLLSEDNKEIELKESVDEDEQPQ 1184 >gi|157150595|ref|YP_001451193.1| DNA-directed RNA polymerase subunit beta [Streptococcus gordonii str. Challis substr. CH1] gi|189043873|sp|A8AZI3|RPOB_STRGC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|157075389|gb|ABV10072.1| DNA-directed RNA polymerase, beta subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 1188 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 418/963 (43%), Positives = 582/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKIGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ ++ I + Sbjct: 278 YKINKKLNIKTRLLNQTIAEPLVDAETGEILVEAGTLMTRSVIDSIAEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + L ++V+ P D Sbjct: 330 GLNKITYIPN----DSAVLTEPVELQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRTVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+E+G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEEGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 169/507 (33%), Positives = 237/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSDDLWDTVREAGMD 1006 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 T ++DG Sbjct: 1007 SDAK----------------------------TVLYDG---------------------- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|77410922|ref|ZP_00787278.1| DNA-directed RNA polymerase, beta subunit [Streptococcus agalactiae CJB111] gi|77162977|gb|EAO73932.1| DNA-directed RNA polymerase, beta subunit [Streptococcus agalactiae CJB111] Length = 1191 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DAGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMDLEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E D+KDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDAKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+GETGEI EAG V+ ++ I D+ Sbjct: 278 YKINKKLNLKTRLLNQTIAENLVDGETGEILAEAGTVMTRDVIDSIAEHIDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVILQKFKVVAPTDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGNS--------NPEDKVRALTPADILAEMSYFLNLAEGIGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRSTGAVTNEIVWLTADEEDEFTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSSIVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++AK G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAKHDGRVIFSDAEKVEVRREDGSLD-------VYHVQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDLVEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV E+ L+++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDSLRDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 170/507 (33%), Positives = 236/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDLVEKGDFIADGPS-MENGEMALGQNPVVAYMTWEGYNFEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEDSLRDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWETVQEAGMD 1006 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 T ++DG Sbjct: 1007 SDAK----------------------------TVLYDG---------------------- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|225573383|ref|ZP_03782138.1| hypothetical protein RUMHYD_01575 [Blautia hydrogenotrophica DSM 10507] gi|225039296|gb|EEG49542.1| hypothetical protein RUMHYD_01575 [Blautia hydrogenotrophica DSM 10507] Length = 1284 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 426/953 (44%), Positives = 594/953 (62%), Gaps = 59/953 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 +R + + E++++P+LIEVQK SY FL +EGL+ F + PI + G Sbjct: 13 KSMRMSYQRQKEVLEMPNLIEVQKDSYQWFL----------DEGLKEVFDDISPIADYGG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEF+ + D K+ ++ C RD+TYA PLK+ +RLI K +I E Sbjct: 63 KLSLEFIDFTLCVDDAKYTIEQCKERDVTYAAPLKVRVRLI---------NKENDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++ + GK LY+C +IP++ Sbjct: 114 EIFMGDLPLMTETGTFVINGAERVIVSQLVRSPGIYYAISHDKV---GKKLYSCTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG + EI+ F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGYGTNAEIIELFGEEPKILASFTKDTA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +++ E +I S L K + K K L + + + Sbjct: 231 ESYQEGLLELYKKIRPGEPLAVESAESLIMSMFFDPRRYDLAKVGRYKFNKKL-MLRNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED+V+G TGEI EAG V+ ++ ++I ++ + Y+ Sbjct: 290 AGQALAEDVVDGTTGEILAEAGTVVSKELADDIQNAAV--------------PYVWIQTE 335 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 K K ++DI + + + + + + + +K + ++ Sbjct: 336 ERKVKVLSSMMVDIRKYVDAD--PKEMGVTELVYYPVLEKILEENDNLEEIKAAVHRDIH 393 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G G DDID+LGNRR+R+VGE+L+NQYR+GL R+E Sbjct: 394 -DLIPKHITKEDILASINYNMHLEYGLGNDDDIDHLGNRRIRAVGELLQNQYRIGLSRLE 452 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ DI+ + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 453 RVVRERMTTQDIEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 512 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL S+AR+N YGF+E PYR Sbjct: 513 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLASYARINQYGFVEAPYR 572 Query: 604 KV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 K+ + +VT +V+Y++A EE+N ++AQAN LDE+G F + V R E R Sbjct: 573 KIDKSDPKNPRVTEEVIYMTADEEDNYHVAQANEPLDENGYFIRKNVSGRYREETQEYER 632 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 + D++D SPK V S+A +LIPFL+NDD+NR LMG NMQRQAVPLL EAP VGTGME+ Sbjct: 633 QMFDYMDVSPKMVFSVATALIPFLQNDDANRALMGSNMQRQAVPLLTTEAPVVGTGMETK 692 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG ++AK+AG+V++ + I I++ +G D Y L KF RSNQ+ C NQ Sbjct: 693 AAVDSGVCVLAKKAGVVQRATSTDISIKNDDGTRDD-------YHLTKFMRSNQSNCYNQ 745 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V G+ V +IADGPST G+LALG+N L+ FM W GYN+ED++L+SER+V +DV Sbjct: 746 RPIVVQGEHVEAGQVIADGPSTSNGELALGKNPLIGFMTWEGYNYEDAVLLSERLVQDDV 805 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRD+P V ++ LK++DE GII +GAEV GDILVGK+ Sbjct: 806 YTSVHIEEYEAEARDTKLGPEEITRDVPGVGDDALKDLDERGIIRIGAEVRAGDILVGKV 865 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R D Sbjct: 866 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTRENGD 918 Score = 559 bits (1441), Expect = e-156, Method: Composition-based stats. Identities = 252/1139 (22%), Positives = 427/1139 (37%), Gaps = 94/1139 (8%) Query: 280 LTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHS 339 + + K + + + G ++ + ++ +++ D + + + + Sbjct: 148 IYYAISHDKVGKKLYSCTVIPNR--GAWLEYE---TDSNDVFYVRVDRTRKVPITVLIRA 202 Query: 340 EIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL 399 ++ I + D + ++ LL++Y+ +RPG+ AES+ + Sbjct: 203 LGYGTNAEIIELFGEEPKILASFTKDTAESYQEGLLELYKKIRPGEPLAVESAESLIMSM 262 Query: 400 FFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNL 459 FFD +YDL+ VGR K N +L L + + ++ + ++ + + D++ Sbjct: 263 FFDPRRYDLAKVGRYKFNKKLMLRNRIAGQALAEDVVDGTTGEILAEAGTVVSKELADDI 322 Query: 460 GNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 N V V + R + + + V + ++A P V E Sbjct: 323 QNAAVPYV-------WIQTEERKVKVLSSMM-------VDIRKYVDADPKEMGVTELVYY 368 Query: 520 SQLSQLEEHVNSLSRI--THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEG 577 L ++ E ++L I R + L + + + YG + Sbjct: 369 PVLEKILEENDNLEEIKAAVHRDIHDLIPKHITKEDILASINYNMHLEYGLGNDDDIDHL 428 Query: 578 HNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSS---- 633 N + ++ + + R V + T D+ +S N A Sbjct: 429 GN-RRIRAVGELLQNQYRIGLSRLERVVRERMTTQDIEGISPQSLINIKPVTAAVKEFFG 487 Query: 634 ------LDEDGSFTEELVFCRC---------AGEEILVPREKIDFIDASPKQVVSIAASL 678 + + EL R + + + + + Sbjct: 488 SSQLSQFMDQNNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGP 547 Query: 679 IPFLENDDSNRVLM-GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQ 737 L N ++ + + P E V+ ++ A E Sbjct: 548 NIGLINSLASYARINQYGFVEAPYRKIDKSDPKNPRVTEEVIYMTADEEDNYHVAQANEP 607 Query: 738 VDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADG 797 +D IR + ++ + + + V + A+ Sbjct: 608 LDENGYFIRKNVSGRYREETQEYERQMFDYMDVSPKMVFS----VATALIPFLQNDDANR 663 Query: 798 PSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER-MVSEDVFTSIHIEEFEVMARDTKL 856 +L P G E + V + ++ Sbjct: 664 ALMGSNMQRQAVPLLTTEAPVVGTGMETKAAVDSGVCVLAKKAGVVQRATSTDISIKNDD 723 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + + ++ I+ G V G ++ + + + L Sbjct: 724 GTRDDYHLTKFMRSNQSNCYNQRPIVVQGEHVEAGQVIADGPSTSN-GELALGKNPLIGF 782 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE--REQI--------EL 966 + + D L V D + H + + + E+I + Sbjct: 783 MTWEGYNYEDAVLL----SERLVQDDVYTSVHIEEYEAEARDTKLGPEEITRDVPGVGDD 838 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 +D DE+ I+ R +IL G+ G L + E R Sbjct: 839 ALKDL-DERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR-------- 889 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 E + K+ + GD++ PGV + V++++A KR I Sbjct: 890 ---------EVRDTSLKVPHGEYGIVVDAKVFTRENGDELSPGVNQSVRIYIAQKRKISV 940 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A Sbjct: 941 GDKMAGRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAK 1000 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 LG I + + D DI + + Y + V E ++ + Sbjct: 1001 ALGFNIATPVFDGANENDIMDTLDMANDYVNMEDFADFKEKYREVLAPDVMEYLENNL-- 1058 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 + + + G+ L DG TGE FD PVT+G+++ LKL+H+V DK Sbjct: 1059 -----------EHRKLWKGVPISRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDK 1107 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR Sbjct: 1108 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRV 1167 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 + YE+I+ G++ E G PESF VL+KE+Q+LGL + + N ME + D+ +L Sbjct: 1168 KTYEAIIKGDNIPEPGIPESFKVLLKELQSLGLDVRVLNEDQTEVEIMESV-DYGDTDL 1225 >gi|262283748|ref|ZP_06061512.1| DNA-directed RNA polymerase subunit beta [Streptococcus sp. 2_1_36FAA] gi|262260594|gb|EEY79296.1| DNA-directed RNA polymerase subunit beta [Streptococcus sp. 2_1_36FAA] Length = 1190 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 418/963 (43%), Positives = 582/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKIGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ ++ I + Sbjct: 278 YKINKKLNIKTRLLNQTIAEPLVDAETGEILVEAGTLMTRSVIDSIAEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + L ++V+ P D Sbjct: 330 GLNKITYIPN----DSAVLTEPVELQKFKVVAPNDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRTVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+E+G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEEGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 169/507 (33%), Positives = 237/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSDDLWDTVREAGMD 1006 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 T ++DG Sbjct: 1007 SDAK----------------------------TVLYDG---------------------- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|22536344|ref|NP_687195.1| DNA-directed RNA polymerase subunit beta [Streptococcus agalactiae 2603V/R] gi|25010231|ref|NP_734626.1| DNA-directed RNA polymerase subunit beta [Streptococcus agalactiae NEM316] gi|76788022|ref|YP_328891.1| DNA-directed RNA polymerase subunit beta [Streptococcus agalactiae A909] gi|76798582|ref|ZP_00780812.1| DNA-directed RNA polymerase, beta subunit [Streptococcus agalactiae 18RS21] gi|77406339|ref|ZP_00783402.1| DNA-directed RNA polymerase, beta subunit [Streptococcus agalactiae H36B] gi|77407917|ref|ZP_00784668.1| DNA-directed RNA polymerase, beta subunit [Streptococcus agalactiae COH1] gi|41018037|sp|Q8E239|RPOB_STRA5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|41018040|sp|Q8E7J8|RPOB_STRA3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|88909642|sp|Q3K3L2|RPOB_STRA1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|22533169|gb|AAM99067.1|AE014199_3 DNA-directed RNA polymerase, beta subunit [Streptococcus agalactiae 2603V/R] gi|23094583|emb|CAD45801.1| RNA polymerase beta-subunit [Streptococcus agalactiae NEM316] gi|76563079|gb|ABA45663.1| DNA-directed RNA polymerase, beta subunit [Streptococcus agalactiae A909] gi|76586068|gb|EAO62596.1| DNA-directed RNA polymerase, beta subunit [Streptococcus agalactiae 18RS21] gi|77173464|gb|EAO76582.1| DNA-directed RNA polymerase, beta subunit [Streptococcus agalactiae COH1] gi|77175044|gb|EAO77850.1| DNA-directed RNA polymerase, beta subunit [Streptococcus agalactiae H36B] gi|319744100|gb|EFV96475.1| DNA-directed RNA polymerase subunit beta [Streptococcus agalactiae ATCC 13813] Length = 1191 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 589/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DAGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMDLEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E D+KDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDAKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+GETGEI +EAG V+ ++ I D+ Sbjct: 278 YKINKKLNLKTRLLNQTIAENLVDGETGEILVEAGTVMTRDVIDSIAEHIDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVILQKFKVVAPTDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGNS--------NPEDKVRALTPADILAEMSYFLNLAEGIGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRSTGAVTNEIVWLTADEEDEFTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSSIVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++AK G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAKHDGRVIFSDAEKVEVRREDGSLD-------VYHVQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDLVEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV E+ L+++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDSLRDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 170/507 (33%), Positives = 236/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDLVEKGDFIADGPS-MENGEMALGQNPVVAYMTWEGYNFEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEDSLRDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWETVQEAGMD 1006 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 T ++DG Sbjct: 1007 SDAK----------------------------TVLYDG---------------------- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|15896392|ref|NP_349741.1| DNA-directed RNA polymerase subunit beta [Clostridium acetobutylicum ATCC 824] gi|20139600|sp|Q97EG9|RPOB_CLOAB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|15026209|gb|AAK81081.1|AE007809_7 DNA-dependent RNA polymerase beta subunit [Clostridium acetobutylicum ATCC 824] gi|325510548|gb|ADZ22184.1| DNA-directed RNA polymerase subunit beta [Clostridium acetobutylicum EA 2018] Length = 1241 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 433/955 (45%), Positives = 603/955 (63%), Gaps = 65/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K EI +P+LIEVQ SY FL + GLQ F + PI ++G Sbjct: 9 KRTRMSFSKLDEIGVMPNLIEVQLDSYQWFL----------DNGLQEIFDDINPIQDYTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +LEF+ Y+ D K+ V++C RD TYA PLK+ +RL+ K ++KEQ Sbjct: 59 NLILEFIGYKLDMDNIKYSVEECKERDTTYAAPLKVKVRLL---------NKETGEVKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG ++D+ + +GK L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGAYYDYIVDK---NGKKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ E DS +IHVRID+ RK+P+T + A+G S+ EI++ F + + Sbjct: 167 GAWLEYETDSNSVIHVRIDKTRKLPITILVRAMGFGSDAEIVNYFGEEERLKATIEKDNT 226 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD----- 301 L+ K + GE ++S L + L K + +G Sbjct: 227 KTREEALLEIYK------RLRPGEPPTVDSAFSLINSLFFDPKRYDLSRVGRYKFNKKLA 280 Query: 302 ---CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + A+DIVN ETGEI +E G I ++ EI +S I + I D++ I Sbjct: 281 VSIRIANKTAAKDIVNPETGEIIVEKGQRISKEKALEIQNSGINSVDISVDDNIIR--VI 338 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 N V K+ + D R + + L + Y + ++ Sbjct: 339 GNNFVDIKSYIKFDISDLNIREL------------VYYPVLKEILENYTDEEAIKEQLKK 386 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 ++ P +HI K+D+ A + + L G G +DDID+LGNRRVRSVGE+L+NQ+R+G Sbjct: 387 NVHKLVP---KHIIKDDMFATVSYELGLAYGIGNVDDIDHLGNRRVRSVGELLQNQFRIG 443 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L RMER +KER++ D + + PQ LIN +PV +++ EFF SSQLSQ + +N LS +TH Sbjct: 444 LSRMERVVKERMTIQDQEVITPQALINIRPVAASIKEFFGSSQLSQFMDQINPLSELTHK 503 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A+VN YGF+ Sbjct: 504 RRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFV 563 Query: 599 ETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 ETPYR V + VT+++ Y++A EE+ IA+AN +LDE+G F ++ + R E ++V Sbjct: 564 ETPYRTVDKEQGRVTDEIHYITADEEDRCLIARANEALDENGYFIDKKITVRAPDEVLVV 623 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P ++D +D S +Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E Sbjct: 624 PANEVDLMDVSARQMVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPVVGTGIE 683 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A SG A+ AG+VE V A + +R S GVD YRL+KF+RSNQ TC+ Sbjct: 684 HKAAVDSGILPKARNAGVVEYVSANEVRVRRD------SDGGVDTYRLLKFKRSNQGTCI 737 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP+V+ ++V + ++ADG STDLG++ALGRN+ + F+ W GYN+ED+MLISE++V + Sbjct: 738 NQRPIVEKNEKVEKGTVLADGQSTDLGEIALGRNIRMGFITWEGYNYEDAMLISEQLVRD 797 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEE+E ARDTKLGPEEITRDIPNV E+ LK+IDE GII +GAEV GDILVG Sbjct: 798 DVFTSIHIEEYEAEARDTKLGPEEITRDIPNVGEDALKDIDERGIIRIGAEVRSGDILVG 857 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV+IF R D Sbjct: 858 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKIFTRENGD 912 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 253/1219 (20%), Positives = 407/1219 (33%), Gaps = 157/1219 (12%) Query: 223 MDSEEILSTF-YPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQV-------- 273 IL Y + + + KV L++ +TGE Sbjct: 56 YTGNLILEFIGYKLDMDNIKYSVEECKERDTTYAAPLKVKVRLLNKETGEVKEQEVFMGD 115 Query: 274 ----IESGKKLTSGLLKSLKEKGVKFLGITSDCLC---GLYVAEDIVNGETG-------- 318 E G + +G + + + V+ G D + G + V G Sbjct: 116 FPLMTEQGTFIINGAERVIVSQLVRSPGAYYDYIVDKNGKKLFSATVIPNRGAWLEYETD 175 Query: 319 --EIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLD 376 + D + + + + V+ ++ T+ D K R++ALL+ Sbjct: 176 SNSVIHVRIDKTRKLPITILVRAMGFGSDAEIVNYFGEEERLKATIEKDNTKTREEALLE 235 Query: 377 IYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDI 436 IY+ +RPG+ T A S+ N LFFD +YDLS VGR K N +L + + Sbjct: 236 IYKRLRPGEPPTVDSAFSLINSLFFDPKRYDLSRVGRYKFNKKLAVSIRIANKT------ 289 Query: 437 IAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDID 496 K +V+ G+ ++ + + + N + + I+ ++ Sbjct: 290 --AAKDIVNPETGEIIVEKGQRISKEKALEIQNSGINSVDISVDD--NIIRVIGNNFVDI 345 Query: 497 SVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGV 556 + I+ + V L + ++ + + L + + Sbjct: 346 KSYIKFDISDLNIRELVYYPVLKEILENYTDEEAIKEQL--KKNVHKLVPKHIIKDDMFA 403 Query: 557 EMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVY 616 + YG + N V S+ + + R V + D Sbjct: 404 TVSYELGLAYGIGNVDDIDHLGN-RRVRSVGELLQNQFRIGLSRMERVVKERMTIQDQEV 462 Query: 617 LSAMEEENRY-IA------QANSSLDEDGSFTEELVFCRCAG------------EEILVP 657 ++ N +A +S L + L E Sbjct: 463 ITPQALINIRPVAASIKEFFGSSQLSQFMDQINPLSELTHKRRLSALGPGGLSRERAGFE 522 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRV-LMGCNMQRQAVPLLKAEAPFVGTGME 716 + + L N + + + E V + Sbjct: 523 VRDVHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFVETPYRTVDKEQGRVTDEIH 582 Query: 717 SVVAKSSGAAIVAKRAG----IVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 + A ++A+ +D V E + P+ + Sbjct: 583 YITADEEDRCLIARANEALDENGYFIDKKITVRAPDEVLVVPAN-----------EVDLM 631 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 + Q V + A +L P G E + Sbjct: 632 DVSARQMVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPVVGTGIEHKAAVDSG 691 Query: 833 MVSEDVFTSIHIEEF----EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 ++ + + E+ EV R G + R + I++ I+ +V Sbjct: 692 ILPKARNAGVV--EYVSANEVRVRRDSDGGVDTYRLLKFKRSNQGTCINQRPIVEKNEKV 749 Query: 889 NPGDILVGKITPKGE-----SPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVR 943 G +L + + E A+ + + +R S + + Sbjct: 750 EKGTVLADGQSTDLGEIALGRNIRMGFITWEGYNYEDAMLISEQLVRDDVFTSIHIEEYE 809 Query: 944 IFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFK 1003 R E E +D DE+ I+ R +IL G+ G Sbjct: 810 AEARDTKLGPEEITRDIPNVGEDALKDI-DERGIIRIGAEVRSGDILVGKVTPKGETELT 868 Query: 1004 KSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWG 1063 L + E R E KI + G Sbjct: 869 AEERLLRAIFGEKAR-----------------EVRDTSLRVPHGEAGIIVDVKIFTRENG 911 Query: 1064 DDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLN 1123 D++PPGV +V+ ++A KR I GDKM+GRHGNK Sbjct: 912 DELPPGVNELVRCYIAQKRKISVGDKMSGRHGNK-------------------------- 945 Query: 1124 PLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE 1183 GV SR + + P L+ + Sbjct: 946 --GVISR--------------------------VLPEEDMPFLPDGRPLQICLNPLGVPS 977 Query: 1184 KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243 +++ V G ++TPVFDGA E I L+ A E G+++LYDG TGE Sbjct: 978 RMNIGQVLEVHLGWAAANLGWHIATPVFDGALEPEIVECLKRAGYAEDGKTVLYDGRTGE 1037 Query: 1244 PFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQ 1303 FD VTVGY+Y+LKL H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++ Sbjct: 1038 AFDNRVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1097 Query: 1304 AYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363 AYGAA+ LQE+LT+KSDDVVGR + YE+IV G + E G PE+F VL+KE+QAL L + + Sbjct: 1098 AYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGIPEAFKVLIKELQALCLDVKV 1157 Query: 1364 ENSRTKNSAKMEEIPDFNK 1382 + E I D + Sbjct: 1158 LSDNNNEIELKESIEDETE 1176 >gi|317132039|ref|YP_004091353.1| DNA-directed RNA polymerase, beta subunit [Ethanoligenens harbinense YUAN-3] gi|315470018|gb|ADU26622.1| DNA-directed RNA polymerase, beta subunit [Ethanoligenens harbinense YUAN-3] Length = 1232 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 434/957 (45%), Positives = 594/957 (62%), Gaps = 69/957 (7%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 VR F E++D+P+LIEVQK SY FL +EGL+ FK V IT F+G Sbjct: 11 KNVRMSFAHIDEVLDMPNLIEVQKNSYQWFL----------DEGLKEVFKDVSAITDFTG 60 Query: 71 AAMLEFVSYEFD-PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +L+FV Y + PK+ +++C RD TYA P+++ RLI + ++KEQ Sbjct: 61 NLVLDFVDYTIENQPKYGIEECKERDATYAAPMRVLARLI---------NRETGEVKEQE 111 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 I+MGD PLMT GTFVI G +R++VSQL RSPG+++ + GK L+ +IP++G Sbjct: 112 IFMGDFPLMTDSGTFVINGAERVIVSQLVRSPGVYYGMQHDKT---GKKLFTATVIPNRG 168 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ E DS D+ +VRID+ RK+PVT F+ ALG+ S+ EIL F + Sbjct: 169 AWLEYETDSNDVFYVRIDKNRKIPVTVFIRALGLGSDAEILDFFGDDDRIKSSIEKDNTK 228 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS------- 300 LM + GE +ES + + L + + +G Sbjct: 229 SIEEGLM------EVYRKLRPGEPPTVESAQTHINALFFDPRRYDLSRVGRYKYNKKLAI 282 Query: 301 -DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + L G ++ + N TGEI +AG+ + EI + + + D R Sbjct: 283 GNRLTGCTLSRPVANPLTGEILADAGETLSRARAHEIERAGVDTAFVQVFD--------R 334 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESM-FNFLFFDSDKYDLSTVGRVKMNM 418 V DA L P D + E + F+ L + ++ + + Sbjct: 335 EVKVISNGMVDADAFL-------PFDPEEVGIREKVRFSVLREILEAHEGEDDLKAAVEE 387 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 R++ P +HI +DI + I L +L N G IDDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 388 RMDDLIP---KHIIIDDIFSSINYLNNLANDIGVIDDIDHLGNRRIRSVGELLQNQFRIG 444 Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 RMER I+ER++ S D+D++ PQ +IN++PV++++ EFF SS LSQ + N L+ +T Sbjct: 445 FSRMERVIRERMNLQSQDLDTITPQSIINSRPVMASIKEFFGSSPLSQFMDQTNPLAELT 504 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL+S L SFAR+N YG Sbjct: 505 HKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLISYLASFARINDYG 564 Query: 597 FIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEI 654 FIE PYRKV V+++VVY++A E+ +AQAN LDE+G F V R E + Sbjct: 565 FIEAPYRKVDKVTGIVSSEVVYMTADVEDEYTVAQANEPLDEEGRFARPKVAARHRDEIL 624 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG 714 + REKID++D SPK VVS+A ++IPFLENDD+NR LMG NMQRQAVPLL+ ++P VGTG Sbjct: 625 EIEREKIDYMDVSPKMVVSVATAMIPFLENDDANRALMGSNMQRQAVPLLRTDSPIVGTG 684 Query: 715 MESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNT 774 ME A SG ++AK G+VE+V A ++IR+ G LD Y L+KF RSNQ T Sbjct: 685 MEYKAAVDSGVCVLAKEEGVVERVAADEVIIRTDSGRLD-------NYHLIKFLRSNQGT 737 Query: 775 CVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMV 834 C NQ P+V G+ V + ++ADGPST G++ALGRN+L+ FM W GYN+ED++L++E +V Sbjct: 738 CFNQHPIVHHGERVVKGQVLADGPSTSQGEIALGRNVLIGFMTWEGYNYEDAVLLNEHLV 797 Query: 835 SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDIL 894 +DV+TSIHIEE+E+ ARDTKLGPEEITRDIPNV E+ L+++DE GII VGAEV+ GDIL Sbjct: 798 MDDVYTSIHIEEYELEARDTKLGPEEITRDIPNVGEDALRDLDERGIIRVGAEVHAGDIL 857 Query: 895 VGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 VGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G G VVDV++F R + Sbjct: 858 VGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEYGIVVDVKVFTRENSE 914 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 188/580 (32%), Positives = 256/580 (44%), Gaps = 80/580 (13%) Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 G + + L R Y + E V + +E + T Sbjct: 663 GSNMQRQAVPLLRTDSPIVGTGMEYKAAVDSGVCVLAKEEGVVERVAADE---VIIRTDS 719 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G + I + ++ I+ G V G +L + + + +L Sbjct: 720 GRLDNYHLIKFLRSNQGTCFNQHPIVHHGERVVKGQVLADGPST-SQGEIALGRNVLIGF 778 Query: 917 FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD-- 972 + + D L V V + ++ + + E I + D Sbjct: 779 MTWEGYNYEDAVLLNEHLVMDDVYTSIHIEEYELEARDTKLGPEEITRDIPNVGEDALRD 838 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ +IL G+ G L + E R Sbjct: 839 LDERGIIRVGAEVHAGDILVGKVTPKGETELTAEERLLRAIFGEKAR------------- 885 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E K+ + +++ PGV VV+ ++A KR I GDKMA Sbjct: 886 ----EVRDTSLRVPHGEYGIVVDVKVFTRENSEELNPGVNMVVRCYIAQKRKISVGDKMA 941 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG+VSR+LP EDMPFL DGTP+DIVLNPLGVPSRMN+GQ+ E HLG+A LG K Sbjct: 942 GRHGNKGVVSRVLPAEDMPFLPDGTPLDIVLNPLGVPSRMNIGQVLEVHLGYAAKALGWK 1001 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I + + D GDI+ Sbjct: 1002 IMTPVFDGAHEGDIAECLKEA--------------------------------------- 1022 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 G E+ G+ LYDG TGE FD PVTVGY+Y LKL H+V DK++ARS Sbjct: 1023 -GLRED--------------GKCCLYDGRTGEQFDNPVTVGYMYFLKLAHLVDDKIHARS 1067 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+ T+KSDDVVGR + YE+ Sbjct: 1068 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEIQTVKSDDVVGRVKTYEA 1127 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNS 1371 IV G + G PE+F VL+KE+Q+LGL + + + + Sbjct: 1128 IVKGQNVPRPGVPEAFKVLIKELQSLGLDMKVLDKAGEEI 1167 >gi|312868034|ref|ZP_07728238.1| DNA-directed RNA polymerase, beta subunit [Streptococcus parasanguinis F0405] gi|311096438|gb|EFQ54678.1| DNA-directed RNA polymerase, beta subunit [Streptococcus parasanguinis F0405] Length = 1189 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 422/963 (43%), Positives = 586/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL N GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------NHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYSLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIIDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAPVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLNIKNRLLNQTIAEPLVDAETGEILVEAGTVMTRDVIDSISEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + L ++V+ P D Sbjct: 330 GLNKITYIPN----DAAVLTEPVELQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR I DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRIITPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D D++ PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNDALTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV KVTN++V+L+A EE+ +AQANS L+ DG+F E++V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGKVTNEIVWLTADEEDEYTVAQANSKLNADGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPASSVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EEFE RDTKLGPEEITR+IPNV E+ L+++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDALRDLDETGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 370 bits (949), Expect = 1e-99, Method: Composition-based stats. Identities = 133/507 (26%), Positives = 208/507 (41%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEDALRDLDETGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A K R + D Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIA----------------QK----RKIRVGD------- 919 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 G K + P + ++ + Sbjct: 920 ---------------------------KMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIM 952 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + +++ + G+ ++TPVFDGA E + ++ A +D ++I Sbjct: 953 LNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVKEAGMDSDAKTI 1012 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1013 LYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + + Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGEDD 1159 >gi|331086364|ref|ZP_08335444.1| DNA-directed RNA polymerase subunit beta [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406130|gb|EGG85653.1| DNA-directed RNA polymerase subunit beta [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1282 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 434/953 (45%), Positives = 595/953 (62%), Gaps = 58/953 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++ +P+LIEVQK SY FL +EGL+ F+ + PI +SG Sbjct: 13 KSSRMSYSRQKEVLQMPNLIEVQKDSYQWFL----------DEGLKEVFRDISPIADYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL + D +I E Sbjct: 63 HLSLEFVDFTLCEDDVKYTIEECKERDATYAAPLKVRVRLYNKEKD---------EINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT GTFVI G +R++VSQL RSPGI++ + GK L++ +IP++ Sbjct: 114 EIFMGDLPLMTATGTFVINGAERVIVSQLVRSPGIYYAIAHDKI---GKELFSSTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG + EI+ F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGFGTNAEIIELFGEEPKILASFGKDTA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 231 ENYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDARRYDLAKVGRYKFNKKLAL-KNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G AE +V+ TGE+ +E G +I + E I ++ +P ++V + + ++ Sbjct: 290 SGQKAAETVVSPLTGEVLVEEGQLITRELAEAIQNA---AVPYVWVQGEERKIKVLSNMM 346 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D A++DI D V E++F + + V +K +R N++ Sbjct: 347 VDLK-----AIVDI-------DPKEVGVTEAVFYPVLAGLLEETAGDVEELKDAIRKNIN 394 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G GT DDID+LGNRR+R+VGE+L+NQYR+GL R+E Sbjct: 395 -ELIPKHITKEDILASINYNIHLEYGLGTDDDIDHLGNRRIRAVGELLQNQYRIGLSRLE 453 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D+D + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 454 RVVRERMTTQDLDGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 513 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++AR+N YGFIE PYR Sbjct: 514 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLATYARINEYGFIEAPYR 573 Query: 604 KVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 K+ + VT +V+Y++A EE+N ++AQAN LDE+G F + V R E R Sbjct: 574 KIDKTDPANPVVTEEVIYMTADEEDNYHVAQANEPLDEEGHFLHKNVSGRYREETQEYER 633 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 + D++D SPK V S+A +LIPFLENDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 634 KMFDYMDVSPKMVFSVATALIPFLENDDANRALMGSNMQRQAVPLLTTEAPVVGTGMEVK 693 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG +VA++AG VE+ + I IR +G Y+L KF RSNQ+ C NQ Sbjct: 694 AAVDSGVCVVAEQAGTVERSTSKEITIRHEDGTK-------KTYKLTKFLRSNQSNCYNQ 746 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V G++V +IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V +DV Sbjct: 747 RPIVVKGEKVEAGQVIADGPSTSNGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQDDV 806 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRDIP V ++ LK++DE GII +GAEV GDILVGK+ Sbjct: 807 YTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDLDERGIIRIGAEVRAGDILVGKV 866 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R D Sbjct: 867 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTRENGD 919 Score = 533 bits (1372), Expect = e-148, Method: Composition-based stats. Identities = 185/597 (30%), Positives = 272/597 (45%), Gaps = 49/597 (8%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISER-MVSEDVFTSIHIEEFEVMARDTKLGP 858 +L P G E + V + ++ + + + G Sbjct: 667 MGSNMQRQAVPLLTTEAPVVGTGMEVKAAVDSGVCVVAEQAGTVERSTSKEITIRHEDGT 726 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 ++ + + ++ I+ G +V G ++ + M + L Sbjct: 727 KKTYKLTKFLRSNQSNCYNQRPIVVKGEKVEAGQVIADGPSTSN-GEMALGKNPLIGFMT 785 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE--REQI--------ELLA 968 + + D L V D + H + + + E+I + Sbjct: 786 WEGYNYEDAVLL----SERLVQDDVYTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDAL 841 Query: 969 RDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQD 1028 +D DE+ I+ R +IL G+ G L + E R Sbjct: 842 KDL-DERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR---------- 890 Query: 1029 EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGD 1088 E + K+ + GD++ PGV + V++++A KR I GD Sbjct: 891 -------EVRDTSLKVPHGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGD 943 Query: 1089 KMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGL 1148 KMAGRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A L Sbjct: 944 KMAGRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKAL 1003 Query: 1149 GKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVST 1208 G I + + D DI E + ++ + V + Sbjct: 1004 GFNIATPVFDGANENDIMDTLDLAND-YVNLEWEEFEQKHKEELLPEVMQYLSD------ 1056 Query: 1209 PVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVY 1268 + + L G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ Sbjct: 1057 -------NREHRKLWKGVPLSRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIH 1109 Query: 1269 ARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRV 1328 ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + Sbjct: 1110 ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKT 1169 Query: 1329 YESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 YE+I+ G++ E G PESF VL+KE+Q+LGL + + ME I D+ + +L Sbjct: 1170 YEAIIKGDNIPEPGIPESFKVLLKELQSLGLDVRVLREDQTEVEIMETI-DYGETDL 1225 >gi|160894090|ref|ZP_02074868.1| hypothetical protein CLOL250_01644 [Clostridium sp. L2-50] gi|156864123|gb|EDO57554.1| hypothetical protein CLOL250_01644 [Clostridium sp. L2-50] Length = 1310 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 427/983 (43%), Positives = 605/983 (61%), Gaps = 66/983 (6%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 V +G G +R + + +++++P+ IEVQK SY FL GL+ AFK + PI Sbjct: 40 VQSGKG-IRMSYSRQKDVLEMPNFIEVQKNSYQWFLTD----------GLKEAFKDISPI 88 Query: 66 TAFSGAAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 T ++G LEFV ++ D K+ +++C RD TYA PLK+ +RL D K Sbjct: 89 TDYTGQLSLEFVDFQLCRDDVKYSIEECKERDATYAAPLKVKVRLHANDA---------K 139 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 ++ E I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++D + GK LY+C Sbjct: 140 EMSEHEIFMGDLPLMTETGTFVINGAERVIVSQLVRSPGIYYDIAHDKI---GKKLYSCT 196 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQ 240 +IP++G W++ E DS D+ +VR+DR RKVP+T + +LG+ + EI+ F KI+ S Sbjct: 197 VIPNRGAWLEYETDSNDVFYVRVDRTRKVPITVLIRSLGIGTNAEIIDLFGEEPKILASI 256 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGI 298 D + + +++ E +I + L K + K K L Sbjct: 257 EKDPSETYQDGLLELYKKIRPGEPLAVESAENLINAMFFDPRRYDLAKVGRYKFNKKLAF 316 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + + G +AED ++ TGE+ EAG + ++I + + Y+ Sbjct: 317 Q-NRITGQILAEDAIDPATGEVIAEAGTTLTRAQAKDIQDAAV--------------PYV 361 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 K + ++D+ + + D + + E ++ + Sbjct: 362 MIQTEERNVKVLSNMVVDLSKYVG-FDPAEVGIHEGVYYPVLETLLNEYSDE--EELKAA 418 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 + +HI KEDIIA I + L G GT DDID+LGNRR+R+VGE+L+NQYR+G Sbjct: 419 IARDASDLVPKHITKEDIIASINYNIHLEYGIGTKDDIDHLGNRRIRAVGELLQNQYRIG 478 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L R+ER ++ER+++ D++++ PQ LIN KPV +AV EFF SSQLSQ + N LS +TH Sbjct: 479 LSRLERVVRERMTTQDVETITPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLSELTHK 538 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL ++AR+N YGF+ Sbjct: 539 RRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLINSLATYARINEYGFV 598 Query: 599 ETPYRKVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEE 653 E PYRK+ + VT++V+YL+A EE+N +AQAN LD DG F V R + Sbjct: 599 EAPYRKLDKSDPANPVVTDEVIYLTADEEDNYRVAQANEPLDADGHFVNNNVSGRYREDT 658 Query: 654 ILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGT 713 P+ ++D +D SPK V S+A S+IPFLENDD+NR LMG NMQRQAVPL+ E+ VGT Sbjct: 659 TEFPKSRVDLMDVSPKMVFSVATSMIPFLENDDANRALMGSNMQRQAVPLMLTESAVVGT 718 Query: 714 GMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQN 773 GME+ A SG IVAKR G+VE + I I++ E DIY ++KF RSNQ Sbjct: 719 GMEAKAAVDSGVCIVAKRDGVVEYSTSKEICIKADE------DGTKDIYHVIKFARSNQG 772 Query: 774 TCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERM 833 C+NQRP+V G+ V+ ++IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+ Sbjct: 773 NCMNQRPIVFKGEHVKAGEVIADGPSTSGGEIALGKNPLIGFMTWEGYNYEDAVLLSERL 832 Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDI 893 V +DV+TSIHIEE+E ARDTKLGPEEITRD+ +S + LK++DE GII +GAEV GDI Sbjct: 833 VKDDVYTSIHIEEYECEARDTKLGPEEITRDLAGLSNDALKDLDENGIIRIGAEVRAGDI 892 Query: 894 LVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR------ 947 LVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G ++D +IF R Sbjct: 893 LVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAFGVIMDTKIFTRENGDEL 952 Query: 948 -HGIDKNERSISVEREQIELLAR 969 G++K+ R ++ +I++ + Sbjct: 953 SPGVNKSVRVYIAQKRKIQVGDK 975 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 254/1131 (22%), Positives = 424/1131 (37%), Gaps = 83/1131 (7%) Query: 280 LTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHS 339 + + K + + + G ++ + + + + ++ + L I Sbjct: 179 IYYDIAHDKIGKKLYSCTVIPNR--GAWLEYETDSNDVFYVRVDRTRKVPITVL--IRSL 234 Query: 340 EIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL 399 I + +D I ++ D ++ +D LL++Y+ +RPG+ AE++ N + Sbjct: 235 GIGTNAEI-IDLFGEEPKILASIEKDPSETYQDGLLELYKKIRPGEPLAVESAENLINAM 293 Query: 400 FFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNL 459 FFD +YDL+ VGR K N +L + + ++ I G + Sbjct: 294 FFDPRRYDLAKVGRYKFNKKLAFQNRITGQILAEDAIDPAT----------GEVIAEAGT 343 Query: 460 GNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 R ++ + + ER++K + V S + V Sbjct: 344 TLTRAQAKDIQDAAVPYVMIQTEERNVKVLSNMVVDLSKYVGFDPAEVGIHEGVYYPVLE 403 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 + L++ + + I R S L + + + YG + N Sbjct: 404 TLLNEYSDEEELKAAIA--RDASDLVPKHITKEDIIASINYNIHLEYGIGTKDDIDHLGN 461 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSS------ 633 + ++ + + R V + T DV ++ N A Sbjct: 462 -RRIRAVGELLQNQYRIGLSRLERVVRERMTTQDVETITPQSLINIKPVTAAVKEFFGSS 520 Query: 634 ----LDEDGSFTEELVFCRC---------AGEEILVPREKIDFIDASPKQVVSIAASLIP 680 + + EL R + + + + + Sbjct: 521 QLSQFMDQNNPLSELTHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNI 580 Query: 681 FLENDDSNRVLM-GCNMQRQAVPLLK---AEAPFVGTGMESVVAKSSGAAIVAKRAGIVE 736 L N + + L P V + + A +A Sbjct: 581 GLINSLATYARINEYGFVEAPYRKLDKSDPANPVVTDEVIYLTA-DEEDNYRVAQANEPL 639 Query: 737 QVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIAD 796 D + + +T + V + + +D Sbjct: 640 DADGHFVNNNVSGRYREDTTEFPKSRVDLMDVSPKMVFSVATSMI----PFLENDDANRA 695 Query: 797 GPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKL 856 +++ A+ + + + G + ++ +V++ + E+ + + Sbjct: 696 LMGSNMQRQAVPLMLTESAVVGTGMEAKAAVDSGVCIVAKRDGVVEYSTSKEICIKADED 755 Query: 857 GPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI 916 G ++I I +++ I+ G V G+++ + G + L+ + Sbjct: 756 GTKDIYHVIKFARSNQGNCMNQRPIVFKGEHVKAGEVIADGPSTSGGEIALGKNPLIGFM 815 Query: 917 --FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI---ELLARDK 971 G D S R+ T + + + D + R+ +D Sbjct: 816 TWEGYNYEDAVLLSERLVKDDVYTSIHIEEYECEARDTKLGPEEITRDLAGLSNDALKDL 875 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE I+ R +IL G+ G L + E R Sbjct: 876 -DENGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR------------- 921 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E + KI + GD++ PGV + V+V++A KR IQ GDKMA Sbjct: 922 ----EVRDTSLKVPHGAFGVIMDTKIFTRENGDELSPGVNKSVRVYIAQKRKIQVGDKMA 977 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG++SR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HLG A LG K Sbjct: 978 GRHGNKGVISRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLGLASQVLGFK 1037 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 + + + D DI + Y D V Sbjct: 1038 VSTPVFDGADEFDIMDTLEMAND-YANTEWEDFYEKYKDSVSEEVMNYLYE--------- 1087 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 + +D +G+ L DG TGE FD PVT+GY++ LKL+H+V DK++ARS Sbjct: 1088 ----NRDHREEWKGVPIDRTGKVQLRDGRTGEEFDSPVTIGYMHYLKLHHLVDDKIHARS 1143 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDV+GR + YE+ Sbjct: 1144 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVIGRVKTYEA 1203 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 I+ G + G PESF VL+KE Q+LGL + + E I +++ Sbjct: 1204 IIKGENIPTPGIPESFKVLLKEFQSLGLDVRVVKDDMTEVDLGETIEAYDE 1254 >gi|325662611|ref|ZP_08151211.1| DNA-directed RNA polymerase subunit beta [Lachnospiraceae bacterium 4_1_37FAA] gi|325471108|gb|EGC74334.1| DNA-directed RNA polymerase subunit beta [Lachnospiraceae bacterium 4_1_37FAA] Length = 1282 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 434/953 (45%), Positives = 595/953 (62%), Gaps = 58/953 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++ +P+LIEVQK SY FL +EGL+ F+ + PI +SG Sbjct: 13 KSSRMSYSRQKEVLQMPNLIEVQKDSYQWFL----------DEGLKEVFRDISPIADYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL + D +I E Sbjct: 63 HLSLEFVDFTLCEDDVKYTIEECKERDATYAAPLKVRVRLYNKEKD---------EINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT GTFVI G +R++VSQL RSPGI++ + GK L++ +IP++ Sbjct: 114 EIFMGDLPLMTATGTFVINGAERVIVSQLVRSPGIYYAIAHDKI---GKELFSSTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG + EI+ F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGFGTNAEIIELFGEEPKILASFGKDTA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 231 ENYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDARRYDLAKVGRYKFNKKLAL-KNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G AE +V+ TGE+ +E G +I + E I ++ +P ++V + + ++ Sbjct: 290 SGQKAAETVVSPLTGEVLVEEGQLITRELAEAIQNA---AVPYVWVQGEERKIKVLSNMM 346 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D A++DI D V E++F + + V +K +R N++ Sbjct: 347 VDLK-----AIVDI-------DPKEVGVTEAVFYPVLAGLLEETAGDVEELKDAIRKNIN 394 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G GT DDID+LGNRR+R+VGE+L+NQYR+GL R+E Sbjct: 395 -ELIPKHITKEDILASINYNIHLEYGLGTDDDIDHLGNRRIRAVGELLQNQYRIGLSRLE 453 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D+D + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 454 RVVRERMTTQDLDGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 513 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++AR+N YGFIE PYR Sbjct: 514 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLATYARINEYGFIEAPYR 573 Query: 604 KVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 K+ + VT +V+Y++A EE+N ++AQAN LDE+G F + V R E R Sbjct: 574 KIDKTDPANPVVTEEVIYMTADEEDNYHVAQANEPLDEEGHFLHKNVSGRYREETQEYER 633 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 + D++D SPK V S+A +LIPFLENDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 634 KMFDYMDVSPKMVFSVATALIPFLENDDANRALMGSNMQRQAVPLLTTEAPVVGTGMEVK 693 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG +VA++AG VE+ + I IR +G Y+L KF RSNQ+ C NQ Sbjct: 694 AAVDSGVCVVAEQAGTVERSTSKEITIRHEDGTK-------KTYKLTKFLRSNQSNCYNQ 746 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V G++V +IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V +DV Sbjct: 747 RPIVVKGEKVEAGQVIADGPSTSNGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQDDV 806 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRDIP V ++ LK++DE GII +GAEV GDILVGK+ Sbjct: 807 YTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDLDERGIIRIGAEVRAGDILVGKV 866 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R D Sbjct: 867 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTRENGD 919 Score = 532 bits (1371), Expect = e-148, Method: Composition-based stats. Identities = 185/597 (30%), Positives = 272/597 (45%), Gaps = 49/597 (8%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISER-MVSEDVFTSIHIEEFEVMARDTKLGP 858 +L P G E + V + ++ + + + G Sbjct: 667 MGSNMQRQAVPLLTTEAPVVGTGMEVKAAVDSGVCVVAEQAGTVERSTSKEITIRHEDGT 726 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 ++ + + ++ I+ G +V G ++ + M + L Sbjct: 727 KKTYKLTKFLRSNQSNCYNQRPIVVKGEKVEAGQVIADGPSTSN-GEMALGKNPLIGFMT 785 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE--REQI--------ELLA 968 + + D L V D + H + + + E+I + Sbjct: 786 WEGYNYEDAVLL----SERLVQDDVYTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDAL 841 Query: 969 RDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQD 1028 +D DE+ I+ R +IL G+ G L + E R Sbjct: 842 KDL-DERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR---------- 890 Query: 1029 EKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGD 1088 E + K+ + GD++ PGV + V++++A KR I GD Sbjct: 891 -------EVRDTSLKVPHGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGD 943 Query: 1089 KMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGL 1148 KMAGRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A L Sbjct: 944 KMAGRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKAL 1003 Query: 1149 GKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVST 1208 G I + + D DI E + ++ + V + Sbjct: 1004 GFNIATPVFDGANENDIMDTLDLAND-YVNLEWEEFEQKHKEELLPEVMQYLSD------ 1056 Query: 1209 PVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVY 1268 + + L G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ Sbjct: 1057 -------NREHRKLWKGVPLSRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIH 1109 Query: 1269 ARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRV 1328 ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + Sbjct: 1110 ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKT 1169 Query: 1329 YESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 YE+I+ G++ E G PESF VL+KE+Q+LGL + + ME I D+ + +L Sbjct: 1170 YEAIIKGDNIPEPGIPESFKVLLKELQSLGLDVRVLREDQTEVEIMETI-DYGETDL 1225 >gi|324992319|gb|EGC24241.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK405] Length = 1188 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 582/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EIL F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEILDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLEARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLSVKTRLLNQTIAEPLVDAETGEILVEAGTVMTRSVIDSIAEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D L ++V+ P D Sbjct: 330 GLNKITYIPN----DSAVLTDPVELQKFKVVAPTD------------------------- 360 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 361 -SDRVVTIIGNANPSDKVRIVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+E G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEKGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y++ KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYQIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 168/507 (33%), Positives = 237/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|171778937|ref|ZP_02919999.1| hypothetical protein STRINF_00860 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282583|gb|EDT48007.1| hypothetical protein STRINF_00860 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1215 Score = 836 bits (2160), Expect = 0.0, Method: Composition-based stats. Identities = 422/963 (43%), Positives = 585/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 27 LAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DNGLREVFE 76 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PIT F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 77 DVLPITNFTDTMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 127 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 128 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 184 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 185 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIMDIFGDSELVR 244 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE +S + L + + +G Sbjct: 245 NTIEKDI-HKNPADSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGR 303 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG V+ ++ I D+ Sbjct: 304 YKINKKLNIKTRLLNQTIAENLVDAETGEILVEAGTVMTRDVIDSIADQLDGDL------ 357 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 358 --NKFVYTPN----DYAVVTEPVVLQKFKVISPVDPDRV------------------VTI 393 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D R + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 394 VGN--------ANPDDKARALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 445 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 446 LANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 505 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+++ Sbjct: 506 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSTYG 565 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 566 HLNKYGFIQTPYRKVDRATGVVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEDIVMGR 625 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 626 HQGNNQEFPSNIVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHA 685 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++AK G V DA ++ +R +G LD +Y + KF+ Sbjct: 686 PYVGTGMEYQAAHDSGAAVIAKHDGRVVFSDAEKVEVRREDGSLD-------VYHITKFR 738 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQ LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYN+ED+++ Sbjct: 739 RSNSGTAYNQHTLVKVGDIVEKGDFIADGPSMEKGEMALGQNPIVAYMTWDGYNYEDAII 798 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV EE LK++DE GII +GAEV Sbjct: 799 LSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEV 858 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 859 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 918 Query: 949 GID 951 D Sbjct: 919 NGD 921 Score = 499 bits (1285), Expect = e-138, Method: Composition-based stats. Identities = 174/508 (34%), Positives = 243/508 (47%), Gaps = 79/508 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + D + V V Sbjct: 751 LVKVGDIVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWDGYNYEDAIILSERLVKEDVY 809 Query: 941 DVRIFNRHGIDKNERSISVER--EQI----ELLARDKDDEQVILDRNIYSRLMEILCGQN 994 + + + E +I E +D DE I+ + +IL G+ Sbjct: 810 TSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDL-DEMGIIRIGAEVKEGDILVGKV 868 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K L + + R +V+ + + + Sbjct: 869 TPKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV----- 912 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSR++P EDMP+L D Sbjct: 913 -KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRVVPVEDMPYLPD 971 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D + D+ Sbjct: 972 GTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGATSEDLW-------- 1023 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 D +E A + ++ Sbjct: 1024 -------------------------------------DTVNE---------AGMASDAKT 1037 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 +LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1038 VLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRF 1097 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+ Sbjct: 1098 GEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKEL 1157 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNK 1382 Q+LGL + + + + + Sbjct: 1158 QSLGLDMRVLDEDDNEVELRDLDEGEDD 1185 >gi|331091890|ref|ZP_08340722.1| DNA-directed RNA polymerase subunit beta [Lachnospiraceae bacterium 2_1_46FAA] gi|330402789|gb|EGG82356.1| DNA-directed RNA polymerase subunit beta [Lachnospiraceae bacterium 2_1_46FAA] Length = 1276 Score = 836 bits (2160), Expect = 0.0, Method: Composition-based stats. Identities = 431/953 (45%), Positives = 586/953 (61%), Gaps = 58/953 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++ +P+LIEVQK SY FL + GL+ F+ + PI +SG Sbjct: 13 KSSRMSYSRQKEVLQMPNLIEVQKDSYQWFL----------DAGLKEVFEDISPIADYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL K +I E Sbjct: 63 HLSLEFVDFTLCEDDVKYTIEECKERDATYAAPLKVKVRLY---------NKETDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMTK GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 114 EIFMGDLPLMTKTGTFVINGAERVIVSQLVRSPGIYYAIAHDKI---GKELYSSTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG + EIL F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGFGTNAEILDLFGEEPKILASFGKDTA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 231 ESYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDARRYDLAKVGRYKFNKKLAL-KNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G AEDIV+ TGE+ +E G VI + E I + +P ++V N I + ++ Sbjct: 290 TGQVAAEDIVSAITGEVIVEEGQVITRELAEAIQN---GAVPFVWVKGEERNIKILSNMM 346 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D D +AE ++ + D + + +K +R N+ Sbjct: 347 VDLESVVD------------VDAKELGIAELVYYPVLADLLEETGGDIDELKEEIRRNIH 394 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G GT DDID+LGNRR+R+VGE+L+NQYR+GL R+E Sbjct: 395 -ELIPKHITKEDILASINYNIHLEYGIGTDDDIDHLGNRRIRAVGELLQNQYRIGLSRLE 453 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D++ + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 454 RVVRERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 513 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +AR+N YGF+E PYR Sbjct: 514 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLACYARINEYGFVEAPYR 573 Query: 604 KV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 K+ + VT +VVY++A EE+N ++AQAN LD +G F + V R E + Sbjct: 574 KIDKTDPKNPVVTEEVVYMTADEEDNYHVAQANEPLDAEGHFIHKNVSGRYREETQEYEK 633 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 D++D SPK V S+A +LIPFLENDD R LMG NMQRQAVPLL EAP VGTGME+ Sbjct: 634 TAFDYMDVSPKMVFSVATALIPFLENDDPTRALMGSNMQRQAVPLLMTEAPVVGTGMETK 693 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG IVA++AG+V++ + I ++ +G Y+L KF RSNQ+ C NQ Sbjct: 694 AAVDSGVCIVAEQAGVVDRSTSKEITVKHDDGTR-------KTYKLTKFLRSNQSNCYNQ 746 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V G+ V +IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V +DV Sbjct: 747 RPIVVKGERVEAGQVIADGPSTSNGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQDDV 806 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TSIHIEE+E ARDTKLGPEEITRDIP V ++ LK++D+ GII +GAEV GDILVGK+ Sbjct: 807 YTSIHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDLDDRGIIRIGAEVRAGDILVGKV 866 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R D Sbjct: 867 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTRENGD 919 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 261/1180 (22%), Positives = 432/1180 (36%), Gaps = 84/1180 (7%) Query: 233 YPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG 292 Y K G V I+ E+VI S + G+ ++ Sbjct: 103 YNKETDEINEHEIFMGDLPLMTKTGTFV------INGAERVIVSQLVRSPGIYYAIAHDK 156 Query: 293 VKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSV 352 + +S + A ++ +++ D + + + + +D Sbjct: 157 IGKELYSSTVIPNRG-AWLEYETDSNDVFYVRVDRTRKVPITVLIRALGFGTNAEILDLF 215 Query: 353 NNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVG 412 I + D + ++ LL++Y+ +RPG+ AES+ +FFD+ +YDL+ VG Sbjct: 216 GEEPKILASFGKDTAESYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDARRYDLAKVG 275 Query: 413 RVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLK 472 R K N +L L + EDI++ I V + G+ ++ + Sbjct: 276 RYKFNKKLALKNRITGQV-AAEDIVSAITGEVIVEEGQVITRELAEAIQNGAVPFVWVKG 334 Query: 473 NQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSL 532 ER+IK + + + + V + L + ++ L Sbjct: 335 E---------ERNIKILSNMMVDLESVVDVDAKELGIAELVYYPVLADLLEETGGDIDEL 385 Query: 533 SRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARV 592 R + L + + + YG + N + ++ + Sbjct: 386 KEEI-RRNIHELIPKHITKEDILASINYNIHLEYGIGTDDDIDHLGN-RRIRAVGELLQN 443 Query: 593 NAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGE 652 + R V + T D+ +S N A S + + Sbjct: 444 QYRIGLSRLERVVRERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLG 503 Query: 653 EILVPREKIDF------IDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKA 706 E+ R D + +V + S + ++ + A Sbjct: 504 ELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLACYARIN 563 Query: 707 EAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMK 766 E FV + +V + + + + LD + + Sbjct: 564 EYGFVEAPYRKIDKTDPKNPVVTEEVVYMTADEEDNYHVAQANEPLDAEGHFIHKNVSGR 623 Query: 767 FQRSNQNT------CVNQRPL----VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 ++ Q ++ P V + +L+ Sbjct: 624 YREETQEYEKTAFDYMDVSPKMVFSVATALIPFLENDDPTRALMGSNMQRQAVPLLMTEA 683 Query: 817 PWHGYNFEDSMLISERMVSEDVFTSIH-IEEFEVMARDTKLGPEEITRDIPNVSEEGLKN 875 P G E + + + + + G + + + Sbjct: 684 PVVGTGMETKAAVDSGVCIVAEQAGVVDRSTSKEITVKHDDGTRKTYKLTKFLRSNQSNC 743 Query: 876 IDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGV 935 ++ I+ G V G ++ + M + L + + D L Sbjct: 744 YNQRPIVVKGERVEAGQVIADGPSTSN-GEMALGKNPLIGFMTWEGYNYEDAVLL----S 798 Query: 936 SGTVVDVRIFNRHGIDKNERSISVE--REQI--------ELLARDKDDEQVILDRNIYSR 985 V D + H + + + E+I + +D DD I+ R Sbjct: 799 ERLVQDDVYTSIHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDLDDR-GIIRIGAEVR 857 Query: 986 LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 +IL G+ G L + E R E + Sbjct: 858 AGDILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRDTSLKVP 900 Query: 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILP 1105 K+ + GD++ PGV + V++++A KR I GDKMAGRHGNKG+VSR+LP Sbjct: 901 HGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGVVSRVLP 960 Query: 1106 CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI 1165 EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG I + + D DI Sbjct: 961 VEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNIATPVFDGANEVDI 1020 Query: 1166 SPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225 + + ++ + ++ + + Sbjct: 1021 MDTLDLANDYVNLEWEEFEAKHKEELLPEVLEYLSEN--------------REHRKLWKG 1066 Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 L G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARSTG YSLVTQQPLGG Sbjct: 1067 VPLSRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGG 1126 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ G + E G PE Sbjct: 1127 KAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGENIPEPGIPE 1186 Query: 1346 SFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 SF VL+KE+Q+LGL + + ME I D+ + +L Sbjct: 1187 SFKVLLKELQSLGLDVRVLRDDNTEVEIMETI-DYGETDL 1225 >gi|118443602|ref|YP_877190.1| DNA-directed RNA polymerase subunit beta [Clostridium novyi NT] gi|158512396|sp|A0PXT8|RPOB_CLONN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|118134058|gb|ABK61102.1| DNA-directed RNA polymerase, beta subunit [Clostridium novyi NT] Length = 1241 Score = 836 bits (2160), Expect = 0.0, Method: Composition-based stats. Identities = 431/950 (45%), Positives = 595/950 (62%), Gaps = 55/950 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K E+ +P+LIEVQ SYD F EGL F V PI ++G Sbjct: 9 KRTRMSFSKVKEMCPMPNLIEVQLNSYDWF----------WKEGLNEVFDDVNPIQDYTG 58 Query: 71 AAMLEFVSYEFDP--PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +LEF+ Y D K+ V++C RD TYA PLK+ +RL+ K ++KEQ Sbjct: 59 NLILEFIDYNLDKDAIKYSVEECKERDATYAAPLKVKVRLL---------NKETGEVKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTFVI G +R++VSQL RSPG ++ +D + GK L++ +IP++ Sbjct: 110 EVFMGDFPLMTQQGTFVINGAERVIVSQLVRSPGAYYGYDVDKT---GKKLFSSTVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS--QRGDFW 245 G W++ E DS DII+VRID+ RK+P++ + ALG+ S+ EI+ F + D Sbjct: 167 GAWLEYETDSNDIIYVRIDKTRKLPISILIRALGLGSDAEIVDWFGEEERLKATIEKDNT 226 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 A + +D+ +I S L + + K K L I L Sbjct: 227 KTREEALLEIYKRLRPGEPPTVDSALSLINSLFFDAKRYDLSRVGRYKFNKKLAIYI-RL 285 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 AED+VN TGEI ++ G+ ID + EI + I + I D V Sbjct: 286 LNQVAAEDVVNPFTGEIIVQKGETIDREKALEIQNCAINAVNIQVEDKV----------- 334 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 K + +DI++ + + L D Y + ++ ++ Sbjct: 335 ---IKVIGNNFVDIHKFIDFDISDLKIKEHVHYPTLKNILDNYTDEKSIKEEIKKNIHEL 391 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 P +HI +DI A I + L GTIDDID+LGNRR+RSVGE+L+NQ+R+GL RME Sbjct: 392 IP---KHIVVDDIYATISYELGLPYEIGTIDDIDHLGNRRLRSVGELLQNQFRIGLSRME 448 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R +KER++ D + + PQ LIN +PV +A+ EFF SSQLSQ + N LS +TH RRLSA Sbjct: 449 RVVKERMTIQDQEVITPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSA 508 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +A+VN YGFIETPYR Sbjct: 509 LGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLACYAKVNEYGFIETPYR 568 Query: 604 KV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 V + +VT+++VYL+A EE++ +AQA LDE+G F +E + R + I+V ++++ Sbjct: 569 LVDKKEARVTDEIVYLTADEEDHYLVAQAKEPLDENGCFIDEKITVRDLEDVIVVSKDQV 628 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D +D SP Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK AP VGTG+E A Sbjct: 629 DLMDVSPSQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPAAPIVGTGIEYKAAV 688 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+ G++E V + + IR S G+D ++L+K++RSNQ TC+NQRP+ Sbjct: 689 DSGVLPKAEHDGVIEYVSSTEVRIRRD------SDGGLDKHKLLKYKRSNQGTCINQRPI 742 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V G++V+ D++ADGPSTD G++ALG+N+ + F+ W GYN+ED+ML+SE++V +D+FTS Sbjct: 743 VSKGEKVKAGDVLADGPSTDFGEIALGQNIRMGFITWEGYNYEDAMLVSEQLVRDDIFTS 802 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE+E ARDTKLGPEEITRDIPNV E+ LKNIDE GI+ +GAEV GDILVGK+TPK Sbjct: 803 IHIEEYESEARDTKLGPEEITRDIPNVGEDALKNIDERGIVRIGAEVRSGDILVGKVTPK 862 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 GE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV++F R D Sbjct: 863 GETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRENGD 912 Score = 506 bits (1302), Expect = e-140, Method: Composition-based stats. Identities = 190/593 (32%), Positives = 269/593 (45%), Gaps = 80/593 (13%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI--HIEEFEVMARDTKLG 857 +L P G E + ++ + + ++ EV R G Sbjct: 659 MGSNMQRQAVPLLKPAAPIVGTGIEYKAAVDSGVLPKAEHDGVIEYVSSTEVRIRRDSDG 718 Query: 858 PEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIF 917 + + + I++ I+ G +V GD+L + + + + Sbjct: 719 GLDKHKLLKYKRSNQGTCINQRPIVSKGEKVKAGDVLADGPST-DFGEIALGQNIRMGFI 777 Query: 918 GEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDK---D 972 + + D L V + + + + + E I + D Sbjct: 778 TWEGYNYEDAMLVSEQLVRDDIFTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNI 837 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 DE+ I+ R +IL G+ G L + E R Sbjct: 838 DERGIVRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAR-------------- 883 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 E K+ + GD++PPGV +V+ ++A KR I GDKMAG Sbjct: 884 ---EVRDTSLRVPHGEAGIIVDVKVFTRENGDELPPGVNELVRCYIAQKRKISVGDKMAG 940 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG++SRILP EDMPFL DG P+ I LNPLGVPSRMN+GQ+ E HLGWA +G I Sbjct: 941 RHGNKGVISRILPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAAGEMGWHI 1000 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + + +I L Sbjct: 1001 ATPVFNGAFEDEIVELLQEA---------------------------------------- 1020 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G E+ G+++LYDG TGEPFD VTVGY+Y+LKL+H+V DK++ARST Sbjct: 1021 GYSED--------------GKTVLYDGRTGEPFDNRVTVGYMYILKLHHLVDDKIHARST 1066 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDVVGR + YE+I Sbjct: 1067 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEVLTVKSDDVVGRVKTYEAI 1126 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 V G + E G PESF VL+KE+QAL L + + S T K++E + + +L Sbjct: 1127 VKGENIPEPGVPESFKVLIKELQALCLDVKVL-SDTNEEIKIKESSEEDMEDL 1178 >gi|327459246|gb|EGF05594.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis SK1057] Length = 1188 Score = 836 bits (2160), Expect = 0.0, Method: Composition-based stats. Identities = 419/963 (43%), Positives = 582/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P ++ + ALG +EIL F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFSTLVRALGFSGDDEILDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLEARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDAETGEILVEAGTVMTRSVIDSIAEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D L ++V+ P D Sbjct: 330 GLNKITYIPN----DSAVLTDPVELQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRIVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+E G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEKGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y++ KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYQIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 168/507 (33%), Positives = 237/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|296877136|ref|ZP_06901176.1| DNA-directed RNA polymerase subunit beta [Streptococcus parasanguinis ATCC 15912] gi|296431656|gb|EFH17463.1| DNA-directed RNA polymerase subunit beta [Streptococcus parasanguinis ATCC 15912] Length = 1189 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 586/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEIRDPKYSLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIIDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAPVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +V+ ETGEI +EAG V+ ++ I + Sbjct: 278 YKINKKLNIKNRLLNQTIAEPLVDAETGEILVEAGTVMTRDVIDSISEQLD--------N 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + L ++V+ P D Sbjct: 330 GLNKITYIPN----DAAVLTEPVELQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPSDKVRIVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D D + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNDVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV G VTN++V+L+A EE+ +AQANS L+E+G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREKGVVTNEIVWLTADEEDEYIVAQANSKLNEEGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HRGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV E+ L+++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDALRDLDETGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 175/507 (34%), Positives = 245/507 (48%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEDALRDLDETGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIRVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLW--------- 997 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D E A +D ++I Sbjct: 998 ------------------------------------DTVKE---------AGMDSDAKTI 1012 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1013 LYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + + Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGEDD 1159 >gi|302871396|ref|YP_003840032.1| DNA-directed RNA polymerase, beta subunit [Caldicellulosiruptor obsidiansis OB47] gi|302574255|gb|ADL42046.1| DNA-directed RNA polymerase, beta subunit [Caldicellulosiruptor obsidiansis OB47] Length = 1230 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 430/959 (44%), Positives = 601/959 (62%), Gaps = 60/959 (6%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 V G R +GK E++D+P L+E+QK S+ FL +EGL+ + + PI Sbjct: 7 VQYG-KVQRMSYGKVKEVLDLPYLLEIQKKSFQWFL----------DEGLREVLREISPI 55 Query: 66 TAFSGAAMLEFVSYEF-DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKD 124 +S +LEFV Y F PPK+ +C RD TYA PLK+ +RLI K + Sbjct: 56 KDYSETLLLEFVDYYFDGPPKYSEQECKERDATYARPLKVKVRLI---------NKETGE 106 Query: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRI 184 IKEQ IYMG+ P+MT+ GTF+I G +R++VSQL RSPG +F + G+ +++ + Sbjct: 107 IKEQDIYMGEFPIMTETGTFIINGAERVIVSQLIRSPGCYFASSIDKQ---GRKIFSGTL 163 Query: 185 IPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALG-MDSEEILSTFYPKIVYSQRGD 243 IP++G W++ E D+ +++ VR+DR RKV +T+ L A G + + I F + Sbjct: 164 IPNRGAWLEFETDTSELLSVRLDRTRKVSLTTLLKAFGLYNQQMIFEKFGEDERLKASLE 223 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS-- 300 + + A + + GE +E+ + L + + + +G Sbjct: 224 KEANKGELGNPVENA-LLEVYRRLRPGEPPNVENARNLLYNMFFDPRRYDLAKVGRYKFN 282 Query: 301 ------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 + A+D+V+ +TGEI ++ G+VI + I + I ++ + + Sbjct: 283 KKLSLWKRIFNKRAAQDVVDPKTGEILVKEGEVITREVALNIQDAGINEVWVYADEERLF 342 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 NT+ DK D + ++ V + + + D+S + R+ Sbjct: 343 KVVGNNTVKLDKYVDFD------VSDLNIKELVYLPVLKEILDTTS------DVSEIKRL 390 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DI A + L+ G GT DDID+LGNRRVR+VGE+L+NQ Sbjct: 391 IKEK----ERELVPYCLTIDDIYAATSYFLGLKYGIGTTDDIDHLGNRRVRAVGELLQNQ 446 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL RMER I+ER++ DID+V PQ LIN +PV +A+ EFF SS LSQ + VN L+ Sbjct: 447 FRIGLARMERVIRERMNIHDIDTVTPQTLINIRPVTAAIKEFFGSSPLSQFMDQVNPLAA 506 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +T+ RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++ARVN Sbjct: 507 LTNKRRLSALGPGGLSRDRAGFEVRDVHHSHYGRMCPIETPEGPNIGLITSLATYARVNE 566 Query: 595 YGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGE 652 YGF+ETPYRKV + +VT+++VYL+A EE+ IAQA +DE+G F + V R E Sbjct: 567 YGFLETPYRKVDKKEARVTDEIVYLTADEEDTYKIAQATEPVDEEGRFINQRVTVRFGEE 626 Query: 653 EILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVG 712 I V + ++D ID SPKQ+VS++ SLIPFLENDD+NR LMG NMQRQAVPLL E+P +G Sbjct: 627 IIEVDKYEVDLIDISPKQIVSVSTSLIPFLENDDANRALMGSNMQRQAVPLLMTESPIIG 686 Query: 713 TGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 TG+E A SG I+A++ G+VE+V A IVIR+ +G D +Y L+KF+R+NQ Sbjct: 687 TGVEYRAAVDSGVCILAEKDGVVEKVSADEIVIRNNDGTKD-------VYNLLKFKRTNQ 739 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 TC NQRP+V+ G EV+ ++IADGPSTD G+LALG+N+LVAFMPW GYN+ED++LISER Sbjct: 740 GTCFNQRPIVRKGQEVKAGEVIADGPSTDHGELALGKNVLVAFMPWEGYNYEDAILISER 799 Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ +K++DE GII +GAEV GD Sbjct: 800 LVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGEDAIKDLDERGIIRIGAEVKSGD 859 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 ILVGK+TPKGE+ +T EE+LLRAIFGEKA + RDTSLRVP G G VVDV++F+R D Sbjct: 860 ILVGKVTPKGETELTAEERLLRAIFGEKARETRDTSLRVPHGEGGIVVDVKVFSRDKGD 918 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 177/645 (27%), Positives = 261/645 (40%), Gaps = 86/645 (13%) Query: 750 GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGR 809 G +I + K++ + Q V + A+ Sbjct: 616 NQRVTVRFGEEIIEVDKYEVDLIDISPKQIVSVSTSLIPFLENDDANRALMGSNMQRQAV 675 Query: 810 NMLVAFMPWHGYNFEDSMLISERMV----SEDVFTSIHIEEFEVMARDTKLGPEEITRDI 865 +L+ P G E + + + V + +E + G +++ + Sbjct: 676 PLLMTESPIIGTGVEYRAAVDSGVCILAEKDGVVEKVSADE---IVIRNNDGTKDVYNLL 732 Query: 866 PNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVR 925 ++ I+ G EV G+++ + + + +L A + + Sbjct: 733 KFKRTNQGTCFNQRPIVRKGQEVKAGEVIADGPST-DHGELALGKNVLVAFMPWEGYNYE 791 Query: 926 DTSLRVPS------GVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILD 979 D L S + + R E E +D DE+ I+ Sbjct: 792 DAILISERLVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGEDAIKDL-DERGIIR 850 Query: 980 RNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLK 1039 + +IL G+ G L + E R E+ Sbjct: 851 IGAEVKSGDILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------ETRD 893 Query: 1040 VQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGI 1099 K+ GD++PPGV ++V+V+VA KR I GDKMAGRHGNK Sbjct: 894 TSLRVPHGEGGIVVDVKVFSRDKGDELPPGVNQLVRVYVAQKRKISVGDKMAGRHGNK-- 951 Query: 1100 VSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY 1159 GV SR+ ++ + Sbjct: 952 --------------------------GVISRI------------------LPVEDMPFLP 967 Query: 1160 KANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAI 1219 ++ V+ +++ G V+TPVFDGA EE I Sbjct: 968 DGTP--------VDIVLNPLGVPSRMNIGQILETHLGYAAKALGWKVATPVFDGAKEEDI 1019 Query: 1220 NSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVT 1279 L++A L+ +G++ILYDG TGEPFD VTVGY+YMLKL H+V DK++ARSTG YSLVT Sbjct: 1020 EEALKLAGLNPTGKTILYDGRTGEPFDNEVTVGYMYMLKLVHLVDDKIHARSTGPYSLVT 1079 Query: 1280 QQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTF 1339 QQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDV GR + YE+IV G + Sbjct: 1080 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVTGRVKTYEAIVKGENIP 1139 Query: 1340 ETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 E G PESF VLVKE+Q+L L + L + K E + D + + Sbjct: 1140 EPGIPESFKVLVKELQSLCLDVKLLSEDNKEIELKESVDDDEQPQ 1184 >gi|266620116|ref|ZP_06113051.1| DNA-directed RNA polymerase, beta subunit [Clostridium hathewayi DSM 13479] gi|288868345|gb|EFD00644.1| DNA-directed RNA polymerase, beta subunit [Clostridium hathewayi DSM 13479] Length = 1288 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 434/954 (45%), Positives = 597/954 (62%), Gaps = 58/954 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 +R F + E++++P+LIE+QK SY FL +EGL+ F+ + PI F+G Sbjct: 13 KSLRMSFSRQKEVLEMPNLIEIQKNSYQWFL----------DEGLKEVFEDISPIADFAG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL D D +I E Sbjct: 63 HLSLEFVDFTLCKDDIKYTIEECKERDATYAAPLKVKVRLCNKDKD---------EINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT G+FVI G +R++VSQL RSPGI++ + GK LY C +IP++ Sbjct: 114 EIFMGDLPLMTDTGSFVINGAERVIVSQLVRSPGIYYGIGHDKV---GKELYTCTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS DI +VR+DR RKVPVT + ALG + EI+ F K++ S D Sbjct: 171 GAWLEYETDSNDIFYVRVDRTRKVPVTVLIRALGFGTNAEIIELFGEEPKLLASFGKDTS 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E ++ S L K + K K L + + Sbjct: 231 DNYQDGLLELYKKIRPGEPLSVDSAESLLNSMFFDPRRYDLAKVGRYKFNKKL-HFKNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G ++ED+V+ TGEI AG +D++ +I ++ +P ++V+ + + + L+ Sbjct: 290 VGHVLSEDVVDTTTGEILATAGTTVDKQLAVDIQNA---AVPYVWVEGLERRQKVLSNLM 346 Query: 364 TDKNKDRKDALLDIYRVMRPGDV-STFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNL 422 D L Y P D T V + + D D V + ++ L Sbjct: 347 VD---------LGAYVSFDPKDAGVTELVFYPVLEKILEDVGTED-EEVLKSAIHRSLGE 396 Query: 423 DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 P +H+ KEDI+A I + L G DDID+LGNRR+R+VGE+L+NQYR+GL RM Sbjct: 397 LIP---KHVTKEDILASINYNMHLEQQVGNADDIDHLGNRRIRAVGELLQNQYRIGLSRM 453 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 ER ++ER+++ D++ + PQ LIN KPV +AV EFF SSQLSQ + N L+ +TH RRLS Sbjct: 454 ERVVRERMTTQDMEGITPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLAELTHKRRLS 513 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 ALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL ++ARVN YGF+E PY Sbjct: 514 ALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLINSLATYARVNQYGFVEAPY 573 Query: 603 RKVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVP 657 R V + VT++VVYL+A EE+N +AQAN LDE+G F + + R E Sbjct: 574 RLVDKSDPNNPIVTDEVVYLTADEEDNFVVAQANEPLDEEGHFIHKNISGRFREETSEFQ 633 Query: 658 REKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMES 717 R+ ID +D SPK V S+A ++IPFLENDD+NR LMG NMQRQAVPLL EAP VGTGME+ Sbjct: 634 RKSIDLMDVSPKMVFSVATAMIPFLENDDANRALMGSNMQRQAVPLLTTEAPVVGTGMEA 693 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 A SG +VA+ AG+VE+ + I+I+ + G D+Y L KF+RSNQ+ C N Sbjct: 694 KAAVDSGVCVVARNAGVVERSASNEIIIKRD------ADGGRDVYHLTKFKRSNQSNCYN 747 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q+P+V + V + ++IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V ED Sbjct: 748 QKPIVYKNNHVEKGEVIADGPSTQNGEIALGKNPLIGFMTWEGYNYEDAVLLSERLVQED 807 Query: 838 VFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGK 897 V+TS+HIEE+E ARDTKLGPEEITRD+P V E+ LK++DE GII +GAEV GDILVGK Sbjct: 808 VYTSVHIEEYEAEARDTKLGPEEITRDVPGVGEDALKDLDERGIIRIGAEVRAGDILVGK 867 Query: 898 ITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 +TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G +VD ++F R D Sbjct: 868 VTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAYGIIVDAKVFTRENGD 921 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 182/595 (30%), Positives = 267/595 (44%), Gaps = 42/595 (7%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLG 857 +L P G E + +V+ + E++ + G Sbjct: 668 MGSNMQRQAVPLLTTEAPVVGTGMEAKAAVDSGVCVVARNAGVVERSASNEIIIKRDADG 727 Query: 858 PEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIF 917 ++ ++ I+ V G+++ + + + + L Sbjct: 728 GRDVYHLTKFKRSNQSNCYNQKPIVYKNNHVEKGEVIADGPSTQN-GEIALGKNPLIGFM 786 Query: 918 GEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI------ELLARDK 971 + + D L V V + + + + E E +D Sbjct: 787 TWEGYNYEDAVLLSERLVQEDVYTSVHIEEYEAEARDTKLGPEEITRDVPGVGEDALKDL 846 Query: 972 DDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE+ I+ R +IL G+ G L + E R Sbjct: 847 -DERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR------------- 892 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E + K+ + GD++ PGV + V++++A KR I GDKMA Sbjct: 893 ----EVRDTSLKVPHGAYGIIVDAKVFTRENGDELSPGVNQTVRIYIAQKRKISVGDKMA 948 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG Sbjct: 949 GRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAARALGFN 1008 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 I + + D DI + E Y+D V E + Sbjct: 1009 IATPVFDGANEIDIMDTLDVAND-YVNMTWEEFQDKYNDTLKPEVIEYLGEHL------- 1060 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 + + L G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARS Sbjct: 1061 ------DHRELWKGVPLSRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARS 1114 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE++T+KSDDVVGR + YE+ Sbjct: 1115 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEIMTVKSDDVVGRVKTYEA 1174 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCELK 1386 I+ G + E G PESF VL+KE+Q+L L + + E + D+ + +L+ Sbjct: 1175 IIKGENIPEPGIPESFKVLLKELQSLALDVRVLRDDNTEVQIAESM-DYEETDLR 1228 >gi|225569775|ref|ZP_03778800.1| hypothetical protein CLOHYLEM_05869 [Clostridium hylemonae DSM 15053] gi|225161245|gb|EEG73864.1| hypothetical protein CLOHYLEM_05869 [Clostridium hylemonae DSM 15053] Length = 1287 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 426/953 (44%), Positives = 584/953 (61%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++ +P+LIEVQK SY FL +EGL+ F + PI +SG Sbjct: 13 KSSRMSYSRQKEVLQMPNLIEVQKDSYQWFL----------DEGLKEVFDDISPIADYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL K +I E Sbjct: 63 HLSLEFVDFTLCEDDVKYTIEECKERDATYAAPLKVRVRLH---------NKETDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 114 EIFMGDLPLMTSTGTFVINGAERVIVSQLVRSPGIYYAIAHDKV---GKKLYSSTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG+ + EI+ F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLVRALGIGTNPEIVDLFGEEPKILASFEKDAA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 231 TNYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDPRRYDLAKVGRYKFNKKLAL-KNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED+ + TGE+ E G + ++ + I ++ + I D N + N +V Sbjct: 290 TGQVLAEDVKSALTGEVVAEKGTKVTRETADAIQNAAAPFVWIERPDEERNIKVLSNMMV 349 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 + D V E ++ + + + +K ++ ++ Sbjct: 350 DLASVVDI-------------DPKEVGVTELVYYPVLETLLEETAGDIDELKDAIKRDIH 396 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G G DDID+LGNRR+R+VGE+L+NQYR+GL R+E Sbjct: 397 -DLIPKHITKEDILASINYNIHLEYGLGNDDDIDHLGNRRIRAVGELLQNQYRIGLSRLE 455 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D++ + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 456 RVVRERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 515 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++AR+N YGF+E PYR Sbjct: 516 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLATYARINQYGFVEAPYR 575 Query: 604 KV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 ++ + VT+ VVY++A EE+N ++AQAN LD++G F + V R E R Sbjct: 576 EISHEDPDNPVVTDKVVYMTADEEDNYHVAQANEPLDDEGHFVHKNVSGRYREETQEYER 635 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 + D++D SPK V S+A +LIPFLENDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 636 TRFDYMDVSPKMVFSVATALIPFLENDDANRALMGSNMQRQAVPLLMTEAPVVGTGMEEK 695 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG +VA+ G+VE+ + I IR + L Y+L KF RSNQ+ C NQ Sbjct: 696 AAVDSGVCMVAEAGGVVERSTSNEITIRQDDNSL-------KRYKLTKFLRSNQSNCYNQ 748 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V GD V D+IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V +DV Sbjct: 749 RPIVFKGDRVEAGDVIADGPSTSNGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQDDV 808 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRDIP V ++ LKN+DE GII +GAEV GDILVGK+ Sbjct: 809 YTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKNLDERGIIRIGAEVRAGDILVGKV 868 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R D Sbjct: 869 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTRENGD 921 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 244/1060 (23%), Positives = 397/1060 (37%), Gaps = 67/1060 (6%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 VD I + D + ++ LL++Y+ +RPG+ AES+ +FFD +YDL Sbjct: 212 VDLFGEEPKILASFEKDAATNYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDPRRYDL 271 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 + VGR K N +L L + + ++ A+ G+ + + ++ Sbjct: 272 AKVGRYKFNKKLALKNRITGQVLAEDVKSALT--------GEVVAEKGTKVTRETADAIQ 323 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 + ER+IK + + + + V V + L + Sbjct: 324 NAAAPFVWIERPDEERNIKVLSNMMVDLASVVDIDPKEVGVTELVYYPVLETLLEETAGD 383 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 ++ L R + L + + + YG + N + ++ Sbjct: 384 IDELKDAI-KRDIHDLIPKHITKEDILASINYNIHLEYGLGNDDDIDHLGN-RRIRAVGE 441 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSS----------LDEDG 638 + + R V + T D+ +S N A + Sbjct: 442 LLQNQYRIGLSRLERVVRERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQN 501 Query: 639 SFTEELVFCRCAGEEIL----VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGC 694 + EL R R + D + P N L Sbjct: 502 NPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLATY 561 Query: 695 NMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDP 754 Q + ++ V + A A + + Sbjct: 562 ARINQYGFVEAPYREISHEDPDNPVVTDKVVYMTADEEDNYHVAQANE-PLDDEGHFVHK 620 Query: 755 STSGVDIYRLMKFQRSNQNTC-VNQRPL--VKVGDEVRRNDIIADGPSTDLGDLALGRNM 811 + SG +++R+ + V+ + + V + A+ + Sbjct: 621 NVSGRYREETQEYERTRFDYMDVSPKMVFSVATALIPFLENDDANRALMGSNMQRQAVPL 680 Query: 812 LVAFMPWHGYNFEDSMLISERMVS-EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSE 870 L+ P G E+ + + + + + + + + Sbjct: 681 LMTEAPVVGTGMEEKAAVDSGVCMVAEAGGVVERSTSNEITIRQDDNSLKRYKLTKFLRS 740 Query: 871 EGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLR 930 ++ I+ G V GD++ + M + L + + D L Sbjct: 741 NQSNCYNQRPIVFKGDRVEAGDVIADGPSTSN-GEMALGKNPLIGFMTWEGYNYEDAVLL 799 Query: 931 VPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSR 985 V V + + + + E I + D DE+ I+ R Sbjct: 800 SERLVQDDVYTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKNLDERGIIRIGAEVR 859 Query: 986 LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETS 1045 +IL G+ G L + E R E + Sbjct: 860 AGDILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRDTSLKVP 902 Query: 1046 KSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILP 1105 K+ + GD++ PGV + V++++A KR I GDKMAGRHGNKG+VSR+LP Sbjct: 903 HGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGVVSRVLP 962 Query: 1106 CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDI 1165 EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG I + + D DI Sbjct: 963 VEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNIATPVFDGANEIDI 1022 Query: 1166 SPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225 + + +D + +D + + Sbjct: 1023 MDTLDLANDYVNLSWEEFEKKHKEDLLPEVLQYL--------------SDNREHRKLWKG 1068 Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285 + G+ L DG +GE FD PVT+G+++ LKL+H+V DK++ARSTG YSLVTQQPLGG Sbjct: 1069 VPISRDGKVRLRDGRSGEFFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGG 1128 Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345 K+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDV+GR + YE+I+ G + E G PE Sbjct: 1129 KAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVIGRVKTYEAIIKGENIPEPGIPE 1188 Query: 1346 SFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 SF VL+KE+Q+LGL + + ME + D + + Sbjct: 1189 SFKVLLKELQSLGLDVRVLRDDNTEVEIMETV-DMGETDF 1227 >gi|291521812|emb|CBK80105.1| DNA-directed RNA polymerase subunit beta [Coprococcus catus GD/7] Length = 1285 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 425/960 (44%), Positives = 592/960 (61%), Gaps = 70/960 (7%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 +R + + E++++P+LIEVQK SYD FL +GL+ F+ + PIT +SG Sbjct: 13 RNIRMSYSRQKEVLEMPNLIEVQKNSYDWFL----------KKGLKEVFEDISPITDYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEF + + K+ +++C RD TYA PLK+ +RLI + D F+ E Sbjct: 63 HLSLEFTDFSLCEEEAKYSIEECKERDATYAAPLKVKVRLINKETDSFS---------EH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 114 EIFMGDLPLMTATGTFVINGAERVIVSQLVRSPGIYYGVGHDKL---GKELYSATVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYP--KIVYSQRGDFW 245 G W++ E DS DI +VR+DR RKVPVT + ALG+ + +EI+ F KI+ + + Sbjct: 171 GAWLEYETDSNDIYYVRVDRTRKVPVTVLIRALGVGTNQEIIDLFGEEPKIMATLSSNKD 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQV-IESGKKLTSGLLKSLKEKGVKFLGITS---- 300 + + I GE + +ES + L + + + + +G Sbjct: 231 VSD------SYQSGLLELYKKIRPGEPLAVESAESLINAMFFDPRRYDLAKVGRYKFNKK 284 Query: 301 ----DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 + + G +AED+V+ TGEI EA ++ E ++I ++ + +YV + Sbjct: 285 LALKNRITGFALAEDVVDETTGEIIAEADTMVTEDLAQKIQNAG---VAAVYVQTEERVE 341 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 + + ++ + D T + E + + + +K Sbjct: 342 KVLSNMMVELTSFVD------------VDPETLGITEKYVYYPVLRQILDENEDIEDIKD 389 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 ++ N HI KEDI A I + L G G DDID+LGNRR+R+VGE+L+NQYR Sbjct: 390 AIKKNA-ADLVPMHITKEDIFASINYNMHLEYGVGNADDIDHLGNRRIRAVGELLQNQYR 448 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GL RMER ++ER+++ D++ V Q LIN KPV +AV EFF SSQLSQ + N LS +T Sbjct: 449 IGLSRMERVVRERMTTQDLEGVSAQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLSELT 508 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL SFAR+N YG Sbjct: 509 HKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPVETPEGPNIGLINSLASFARINQYG 568 Query: 597 FIETPYRKV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 FIE PYR + + +VT++V YL+A EE+ +AQAN +DE+G F + V R Sbjct: 569 FIEAPYRILDKTDPKNPRVTDEVAYLTADEEDKFRVAQANEPIDENGYFVNKTVSGRYRE 628 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E R ++D +D SP+ V S+A S+IPFL+NDD+NR LMG NMQRQAVPL+ ++P V Sbjct: 629 ETTSFQRSQVDLMDVSPRMVFSVATSMIPFLQNDDANRALMGSNMQRQAVPLMLTDSPVV 688 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTGME+ A SG +VAKR G+VE+ + ++I++ +G D Y+L+KF SN Sbjct: 689 GTGMEAKAAVDSGVCVVAKRGGVVERSASNEVIIKADDGTRD-------TYKLLKFSGSN 741 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 Q C NQRP+V GD V + D++ADGPST G+LALG+N L+ FM W GYNFED++L+SE Sbjct: 742 QGACYNQRPIVFRGDRVEKGDVLADGPSTSQGELALGKNPLIGFMTWEGYNFEDAVLLSE 801 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+V EDV+TSIHI E+E ARDTKLGPEEITRD+P V ++ LKN+DE GII VGAEV G Sbjct: 802 RLVQEDVYTSIHISEYEAEARDTKLGPEEITRDVPGVGDDALKNLDERGIIRVGAEVRAG 861 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G ++D ++F R D Sbjct: 862 DILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIILDAKVFTRENGD 921 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 260/1072 (24%), Positives = 409/1072 (38%), Gaps = 79/1072 (7%) Query: 342 RDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFF 401 + I+ + + D + + LL++Y+ +RPG+ AES+ N +FF Sbjct: 207 TNQEIIDLFGEEPKIMATLSSNKDVSDSYQSGLLELYKKIRPGEPLAVESAESLINAMFF 266 Query: 402 DSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGN 461 D +YDL+ VGR K N +L L + ++ + ++ + T D + N Sbjct: 267 DPRRYDLAKVGRYKFNKKLALKNRITGFALAEDVVDETTGEIIAEADTMVTEDLAQKIQN 326 Query: 462 RRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ 521 V +V Y R+E+ + + V++ S + D V Sbjct: 327 AGVAAV-------YVQTEERVEKVLSNMM--VELTSFVDVDPETLGITEKYVYYPV---- 373 Query: 522 LSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTH----YGRICPAETSEG 577 L Q+ + + I + +A + + + + H G + Sbjct: 374 LRQILDENEDIEDIKDAIKKNAADLVPMHITKEDIFASINYNMHLEYGVGNADDIDHLGN 433 Query: 578 HNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSS---- 633 I V L + + R V + T D+ +SA N A Sbjct: 434 RRIRAVGELL---QNQYRIGLSRMERVVRERMTTQDLEGVSAQSLINIKPVTAAVKEFFG 490 Query: 634 ------LDEDGSFTEELVFCRCAGEEIL----VPREKIDFIDASPKQVVSIAASLIPFLE 683 + + EL R R + D + P Sbjct: 491 SSQLSQFMDQNNPLSELTHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPVETPEGP 550 Query: 684 NDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRI 743 N L Q + T ++ A + A A Sbjct: 551 NIGLINSLASFARINQYGFIEAPYRILDKTDPKNPRVTDEVAYLTADEEDKFRVAQANE- 609 Query: 744 VIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC-VNQRPL--VKVGDEVRRNDIIADGPST 800 I ++ + SG FQRS + V+ R + V + A+ Sbjct: 610 PIDENGYFVNKTVSGRYREETTSFQRSQVDLMDVSPRMVFSVATSMIPFLQNDDANRALM 669 Query: 801 DLGDLALGRNMLVAFMPWHGYNFEDSMLISER-MVSEDVFTSIHIEEFEVMARDTKLGPE 859 +++ P G E + V + + G Sbjct: 670 GSNMQRQAVPLMLTDSPVVGTGMEAKAAVDSGVCVVAKRGGVVERSASNEVIIKADDGTR 729 Query: 860 EITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGE 919 + + + ++ I+ G V GD+L + + + + L Sbjct: 730 DTYKLLKFSGSNQGACYNQRPIVFRGDRVEKGDVLADGPST-SQGELALGKNPLIGFMTW 788 Query: 920 KAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE------LLARDKDD 973 + + D L V V + + + + + E + ++ D Sbjct: 789 EGYNFEDAVLLSERLVQEDVYTSIHISEYEAEARDTKLGPEEITRDVPGVGDDALKNL-D 847 Query: 974 EQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQR 1033 E+ I+ R +IL G+ G L + E R Sbjct: 848 ERGIIRVGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR--------------- 892 Query: 1034 NVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGR 1093 E + K+ + GD++ PGV + V+V++A KR I GDKMAGR Sbjct: 893 --EVRDTSLKVPHGEYGIILDAKVFTRENGDELSPGVNQCVRVYIAQKRKISVGDKMAGR 950 Query: 1094 HGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIK 1153 HGNKG+VSRILP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HLG A LG KI+ Sbjct: 951 HGNKGVVSRILPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLGLAARALGFKIE 1010 Query: 1154 SLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDG 1213 + + + DI + T E+ S D++ + Sbjct: 1011 TPVFNGADENDIMDTLELANDYVNTS--WEEFSAKWKDTLDEKVYNYLD----------- 1057 Query: 1214 ADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTG 1273 + +A + + +G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARSTG Sbjct: 1058 -ENKAYREEWKGVPISRTGKVQLRDGRTGEEFDSPVTIGFMHYLKLHHLVDDKIHARSTG 1116 Query: 1274 SYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIV 1333 Y+LVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDV GR + YE+I+ Sbjct: 1117 PYALVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTFKSDDVTGRVKAYEAII 1176 Query: 1334 AGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 G + E G PESF VL+KE+Q+L L + + E + D+ + Sbjct: 1177 KGENISEPGIPESFKVLLKELQSLALDVRVLRDDQTEVELGETV-DYGDDDF 1227 >gi|319945775|ref|ZP_08020026.1| DNA-directed RNA polymerase subunit beta [Streptococcus australis ATCC 700641] gi|319748135|gb|EFW00378.1| DNA-directed RNA polymerase subunit beta [Streptococcus australis ATCC 700641] Length = 1189 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 418/963 (43%), Positives = 581/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEIREPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAPVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ ++ I D+ + Sbjct: 278 YKINKKLNIKTRLLNQTIAEPLVDAETGEILVEAGTVMTRDVIDSISEHLDGDLNKIV-- 335 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 D + +L ++V+ P D Sbjct: 336 ----------YTPNDSAVLTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRIVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV G VTN++V+L+A EE+ +AQANS L+E G F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDREKGVVTNEIVWLTADEEDEYIVAQANSKLNEAGGFAEPIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HRGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHGGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 169/507 (33%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIRVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS+VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + K + + Sbjct: 1133 SLGLDMRVLDEDDKEVELRDLDEGEDD 1159 >gi|291562244|emb|CBL41060.1| DNA-directed RNA polymerase subunit beta [butyrate-producing bacterium SS3/4] Length = 1282 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 430/953 (45%), Positives = 582/953 (61%), Gaps = 57/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 VR F + E++++P+LIE+QK SY FL +EGL+ F + PI F+G Sbjct: 8 KSVRMSFSRQKEVLEMPNLIEIQKDSYQWFL----------DEGLKEVFDDISPIADFAG 57 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL D D +I E Sbjct: 58 HLSLEFVDFTLCKDDIKYTIEECKERDATYAAPLKVKVRLCNKDKD---------EINEH 108 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT G+FVI G +R++VSQL RSPGI++ D + GK LY+C +IP++ Sbjct: 109 EIFMGDLPLMTDTGSFVINGAERVIVSQLVRSPGIYYGIDHDKI---GKELYSCTVIPNR 165 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVPVT + ALG + EI+ F K++ S D Sbjct: 166 GAWLEYETDSNDVFYVRVDRTRKVPVTVLIRALGYGTNAEIIDLFGEEPKLLASFGKDTS 225 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E ++ L K + K K L + + Sbjct: 226 DNYQDGLLELYKKIRPGEPLSVDSAESLLNGMFFDPRRYDLAKVGRYKFNKKL-HMKNRI 284 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +EDIV+ TGEI EAG I + I ++ IP +++ + + + L+ Sbjct: 285 VGQIPSEDIVDTSTGEILAEAGKAITKDQAIAIQNA---AIPYVWIQTEERVEKVLSNLM 341 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D L Y P +V + + Sbjct: 342 VD---------LSAYVTFDPAEV----GITELVYYPVLKEILEKAGDDEEALKAELHRNI 388 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 + I KEDI+A I + L G G DDID+LGNRR+R+VGE+L+NQYR+GL RME Sbjct: 389 HELVPKCITKEDILASINYNMHLEYGIGVKDDIDHLGNRRIRAVGELLQNQYRIGLSRME 448 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ DID + PQ LIN KPV +AV EFF SSQLSQ + N LS +TH RRLSA Sbjct: 449 RVVRERMTTQDIDGITPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLSELTHKRRLSA 508 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A+VN YGF+E PYR Sbjct: 509 LGPGGLSRERAGFEVRDVHYTHYGRMCPVETPEGPNIGLINSLASYAKVNQYGFVEAPYR 568 Query: 604 KVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 V + +VT++VVY++A EE+N +AQAN LDE+G F V R E + Sbjct: 569 VVDKTDPANPRVTDEVVYMTADEEDNYIVAQANEPLDENGYFIHNNVSGRFREETSSFQK 628 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 +ID +D SP+ V S+A S+IPFL+NDD+NR LMG NMQRQAVPLL EAP VGTG+E Sbjct: 629 RQIDLMDVSPRMVFSVATSMIPFLQNDDANRALMGSNMQRQAVPLLSTEAPVVGTGIEGK 688 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG +VAK AG+VE+ + IVI+ S D+Y L+KF RSNQ+ NQ Sbjct: 689 AAVDSGVCVVAKNAGVVERSASNEIVIKRD------SDGNRDVYCLIKFSRSNQSNSYNQ 742 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 +P+V GD V + ++IADGPST G++ALG+N L+ FM W GYN+ED++L+SE++V DV Sbjct: 743 KPIVYKGDHVEKGEVIADGPSTKDGEIALGKNPLIGFMTWEGYNYEDAVLLSEKLVMNDV 802 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E +RDTKLGPEEITRD+P V E+ LK++DE GII +GAEV GDILVGK+ Sbjct: 803 YTSVHIEEYECESRDTKLGPEEITRDVPGVGEDALKDLDERGIIRIGAEVRAGDILVGKV 862 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G GT++D ++F R D Sbjct: 863 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAYGTIIDAKLFTRENGD 915 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 259/1171 (22%), Positives = 431/1171 (36%), Gaps = 78/1171 (6%) Query: 243 DFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKS--LKEKGVKFLGITS 300 + ++ ++ +G + DTG VI +++ L G+ I Sbjct: 99 NKDKDEINEHEIFMGD----LPLMTDTGSFVINGAERVIVSQLVRSPGIYYGIDHDKIGK 154 Query: 301 DCLCGLYVAED----IVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNA 356 + + ++ +++ D + + + + +D Sbjct: 155 ELYSCTVIPNRGAWLEYETDSNDVFYVRVDRTRKVPVTVLIRALGYGTNAEIIDLFGEEP 214 Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 + + D + + +D LL++Y+ +RPG+ + AES+ N +FFD +YDL+ VGR K Sbjct: 215 KLLASFGKDTSDNYQDGLLELYKKIRPGEPLSVDSAESLLNGMFFDPRRYDLAKVGRYKF 274 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 N +L++ V I EDI+ + GK D + Sbjct: 275 NKKLHMKNRI-VGQIPSEDIVDTSTGEILAEAGKAITKDQAIAIQNAAIPYV------WI 327 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 R+E+ + + + S + V L + + +L Sbjct: 328 QTEERVEKVLS---NLMVDLSAYVTFDPAEVGITELVYYPVLKEILEKAGDDEEALKAEL 384 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H + + ++H + + G+ + ++ + Sbjct: 385 HRNIHELVPKCITKEDILASINYNMHLEYGIGVKDDIDHLGN--RRIRAVGELLQNQYRI 442 Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSS----------LDEDGSFTEELVF 646 + R V + T D+ ++ N A + + EL Sbjct: 443 GLSRMERVVRERMTTQDIDGITPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLSELTH 502 Query: 647 CRCAGEEIL----VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP 702 R R + D + P N L Q Sbjct: 503 KRRLSALGPGGLSRERAGFEVRDVHYTHYGRMCPVETPEGPNIGLINSLASYAKVNQYGF 562 Query: 703 LLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIY 762 + T + + A A + + + + Sbjct: 563 VEAPYRVVDKTDPANPRVTDEVVYMTADEEDNYIVAQANEPLDENGYFIHNNVSGRFREE 622 Query: 763 RLMKFQRSNQNTCVNQRPL--VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHG 820 +R V+ R + V + A+ +L P G Sbjct: 623 TSSFQKRQIDLMDVSPRMVFSVATSMIPFLQNDDANRALMGSNMQRQAVPLLSTEAPVVG 682 Query: 821 YNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDE 878 E + +V+++ E++ + G ++ I + ++ Sbjct: 683 TGIEGKAAVDSGVCVVAKNAGVVERSASNEIVIKRDSDGNRDVYCLIKFSRSNQSNSYNQ 742 Query: 879 CGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI--FGEKAVDVRDTSLRVPSGVS 936 I+ G V G+++ + K + L+ + G D S ++ Sbjct: 743 KPIVYKGDHVEKGEVIADGPSTKDGEIALGKNPLIGFMTWEGYNYEDAVLLSEKLVMNDV 802 Query: 937 GTVVDVRIFNRHGIDKNERSISVEREQ---IELLARDKDDEQVILDRNIYSRLMEILCGQ 993 T V + + D + R+ E +D DE+ I+ R +IL G+ Sbjct: 803 YTSVHIEEYECESRDTKLGPEEITRDVPGVGEDALKDL-DERGIIRIGAEVRAGDILVGK 861 Query: 994 NAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRF 1053 G L + E R E + Sbjct: 862 VTPKGETELTAEERLLRAIFGEKAR-----------------EVRDTSLKVPHGAYGTII 904 Query: 1054 KNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLK 1113 K+ + GD++ PGV V++++A KR I GDKMAGRHGNKG+VSR+LP EDMPFL Sbjct: 905 DAKLFTRENGDELAPGVNETVRIYIAQKRKISVGDKMAGRHGNKGVVSRVLPVEDMPFLP 964 Query: 1114 DGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLE 1173 +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG + + + D DI Sbjct: 965 NGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNVSTPVFDGADENDIQDTLELAN 1024 Query: 1174 KVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQ 1233 + +LR G + ++ + + +G+ Sbjct: 1025 DYVN---MEWDAFQEKYKDILRPDAMEYLGEHL-----------DHRALWKGVPISRTGK 1070 Query: 1234 SILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQR 1293 L DG TGE FD P T+G+++ LKL+H+V DK++ARSTG Y+LVTQQPLGGK+ GGQR Sbjct: 1071 VQLRDGRTGEYFDGPTTIGHMHYLKLHHLVDDKIHARSTGPYALVTQQPLGGKAQFGGQR 1130 Query: 1294 LGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKE 1353 GEMEVW ++AYGAAY LQE+LT+KSDDVVGR + YE+I+ G + E G PESF VL+KE Sbjct: 1131 FGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIIKGENIPEPGIPESFKVLLKE 1190 Query: 1354 MQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 +Q+LGL + + + E I D++ Sbjct: 1191 LQSLGLDVRVLRDNGEEVDMSENI-DYSDTN 1220 >gi|295397945|ref|ZP_06808002.1| DNA-directed RNA polymerase subunit beta [Aerococcus viridans ATCC 11563] gi|294973830|gb|EFG49600.1| DNA-directed RNA polymerase subunit beta [Aerococcus viridans ATCC 11563] Length = 1193 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 411/963 (42%), Positives = 576/963 (59%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M V G RVR+ + + E++++P+LIE+Q SY FL ++G++ F+ Sbjct: 1 MTGHNVNFGKHRVRRSYSRINEVLELPNLIEIQTDSYKWFL----------DQGMKEMFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI +G LEFV Y F K+++ + D Y+ P+ + LRL+ K Sbjct: 51 DISPIEDHAGKLALEFVDYSFKEAKYNLAEARAHDTNYSAPIYVKLRLM---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK+Q ++ GD PLMT GTF+I G +R++VSQL RSPG++F + +G+ + Sbjct: 102 ETGEIKDQEVFFGDFPLMTDGGTFIINGAERVIVSQLVRSPGVYFH---DKLDKNGRQSF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYS 239 +IP++G W+++E D+K+I +VRIDR RKVP++ + ALG S++ I F Sbjct: 159 GTTVIPNRGAWLEMETDAKNISYVRIDRTRKVPMSVLMRALGFSSDDQIREIFGESETLE 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + +D + + GE +S + L + + + +G Sbjct: 219 LTLEKD-VHKDLSDSRTEEALKEIYERLRPGEPKTADSSRNLLTARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE +V+ ETGEI + G ++ + ++++ Sbjct: 278 YKVNKKLDIKNRLFNQILAETLVDPETGEILADKGTELNREIMDKL-------------- 323 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 Y N L DA+L + + K Sbjct: 324 ----EPYFDNGLNVTTLYPNDDAVL--------TEPVDVQI------------IKIQAPK 359 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 +N+ N + R + D++A + + L G G DDID+LGNRR+RSVGE+ Sbjct: 360 DADRVINVIGNASPGREARALTIADVLASLNYFLGLYEGIGKTDDIDHLGNRRIRSVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S DI+ V PQ LIN +PVV+++ EFF SSQLSQ + N Sbjct: 420 LQNQFRIGLSRMERVVRERMSIQDIEKVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RRLSALG GG+ R RAG E+RDVH +HYGR+CP ET EG NIGL+++L S+A Sbjct: 480 PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINNLASYA 539 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 ++N +GFIETPYR+V KVT+ + YL+A EE+N IAQ NS L+EDGSF EE+V R Sbjct: 540 KINEFGFIETPYRRVDWNTHKVTDRIDYLTADEEDNFVIAQGNSILNEDGSFAEEIVMAR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 E I V E++D++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPLL+ A Sbjct: 600 YVEENIEVKPERVDYMDVSPKQVVSVATASIPFLENDDSNRALMGANMQRQAVPLLQPHA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME A SGAA+VA+ G+VE VDA I +R +G LD Y L+K+ Sbjct: 660 PLVGTGMEHKAAADSGAAVVAQFDGVVEYVDAREIRVRREDGALDK-------YPLIKYH 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN + NQ P V +G+ V +I+A+GPS + G++ALG+N L+AFM W GYN+ED+++ Sbjct: 713 RSNASASYNQTPNVTIGESVTAGEILANGPSMENGEMALGQNPLIAFMTWDGYNYEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSIHI+E E ARDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSIHIDELESEARDTKLGPEEITREIPNVGEDSLRNLDERGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKG + ++ EE LL AIFGEKA +VRDTSLRVP G G V DV++F R Sbjct: 833 KDGDILVGKVTPKGVTELSAEEHLLHAIFGEKAREVRDTSLRVPHGGGGIVNDVKVFYRE 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 245/1098 (22%), Positives = 387/1098 (35%), Gaps = 175/1098 (15%) Query: 320 IYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYR 379 + + A + + EIF L D + ++AL +IY Sbjct: 194 VLMRALGFSSDDQIREIFGESETLELTLEKDV----------HKDLSDSRTEEALKEIYE 243 Query: 380 VMRPGDVSTFSVAESMFNFLFFDS--------------------DKYDLSTVGRVKMNMR 419 +RPG+ T + ++ FFD ++ + ++ Sbjct: 244 RLRPGEPKTADSSRNLLTARFFDPRRYDLAAVGRYKVNKKLDIKNRLFNQILAETLVDPE 303 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 D + +E + + + N + D + V +++K Q Sbjct: 304 TGEILADKGTELNREIMDKLEPYFDNGLNVTTLYPNDDAVLTEPVDV--QIIKIQAPKDA 361 Query: 480 LRMERSIKERISSVDIDSVMPQDL----INAKPVVSAVCEFFCSSQLSQLEEHVNSLSRI 535 R+ I + ++ D+ + + + L Sbjct: 362 DRVINVIGNASPGREARALTIADVLASLNYFLGLYEGIGKTDDIDHLGNRRIRSVGELLQ 421 Query: 536 THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 R + + V + ++ V P I P S G + N Sbjct: 422 NQFRIGLSRMERVVRERMSIQDIEKVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPL 481 Query: 596 GFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEIL 655 G + R LSA L + Sbjct: 482 GELTHKRR-------------LSA------------------------LGPGGLTRDRAG 504 Query: 656 VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLM-GCNMQRQAVPLLKAEAPFVGTG 714 + + + L N+ ++ + + V Sbjct: 505 YEVRDVHYSHYGRMCPIETPEGPNIGLINNLASYAKINEFGFIETPYRRVDWNTHKVTDR 564 Query: 715 MESVVAKSSGAAIVAKRAGIVEQ--VDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 ++ + A ++A+ I+ + A IV+ + Y Sbjct: 565 IDYLTADEEDNFVIAQGNSILNEDGSFAEEIVMARYVEENIEVKPERVDY---------M 615 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE--DSMLIS 830 + Q V + ++ +L P G E + Sbjct: 616 DVSPKQVVSVATASIPFLENDDSNRALMGANMQRQAVPLLQPHAPLVGTGMEHKAAADSG 675 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 +V++ +++ E+ R + G + I + ++ + +G V Sbjct: 676 AAVVAQFDGVVEYVDAREIRVRR-EDGALDKYPLIKYHRSNASASYNQTPNVTIGESVTA 734 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 G+IL + M + L A + D + + Sbjct: 735 GEILANGPS-MENGEMALGQNPLIAFMTWDGYNYEDAVIMS----------------ERL 777 Query: 951 DKNERSISVEREQIELLARDKDDEQVILDRNI----------YSRLMEILCGQNAVSGPK 1000 K++ S+ +++E ARD + R I I G G Sbjct: 778 VKDDVYTSIHIDELESEARDTKLGPEEITREIPNVGEDSLRNLDERGIIRIGAEVKDGDI 837 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 K T +S F + +V+ + + + K+ Sbjct: 838 LVGKVTPKGVTELSAEEHLLHAIFGEKAREVRDTSLRVPHGGGGIVNDV------KVFYR 891 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 + GD++ PGV +V+V++ KR IQ GDKMAGRHGNKG+VSRILP EDMP++ DGTPVDI Sbjct: 892 ENGDELSPGVSMLVRVYIIQKRKIQVGDKMAGRHGNKGVVSRILPQEDMPYMPDGTPVDI 951 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 +LNPLGVPSRMN+GQ+ E HLG A +G I + + D D+ Sbjct: 952 MLNPLGVPSRMNIGQVLELHLGMAAREMGIHIATPVFDGANEEDVW-------------- 997 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGL 1240 E I A + +++LYDG Sbjct: 998 ------------------------------------ETIKE----AGMASDAKTVLYDGR 1017 Query: 1241 TGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVW 1300 TGEPFD V+VG +Y LKL+HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1018 TGEPFDNRVSVGVMYYLKLSHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1077 Query: 1301 CIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLS 1360 ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q+LGL Sbjct: 1078 ALEAYGAAYTLQEILTYKSDDVVGRVQTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLD 1137 Query: 1361 IDLENSRTKNSAKMEEIP 1378 I++ +S K + Sbjct: 1138 IEVLDSDKKAVDLRDMDE 1155 >gi|94987714|ref|YP_595815.1| DNA-directed RNA polymerase beta chain [Streptococcus pyogenes MGAS9429] gi|94541222|gb|ABF31271.1| DNA-directed RNA polymerase beta chain [Streptococcus pyogenes MGAS9429] Length = 961 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 427/963 (44%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DSGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGESDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG + +E I D+ Sbjct: 278 YKVNKKLNIKTRLLNQIIAENLVDAETGEILVEAGTEMTRSVIESIEEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVSPIDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D D + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNDVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV +VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGRVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFSASVVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ IR +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEIRRQDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 105 bits (261), Expect = 8e-20, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 106/314 (33%), Gaps = 26/314 (8%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTSIHIEEFEVMARDTKLGP 858 ++ P+ G E S V + + E + + G Sbjct: 643 MGANMQRQAVPLIDPKAPYVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEIRRQDGS 702 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 ++ ++ ++ VG V GD + + M + + A Sbjct: 703 LDVYHITKFRRSNSGTAYNQRTLVKVGDIVEKGDFIADGPS-MENGEMALGQNPVVAYMT 761 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQI----ELLARDKD 972 + + D + V V + + + E +I E +D Sbjct: 762 WEGYNFEDAVIMSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDL- 820 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 DE I+ + +IL G+ G K L + + R +V+ Sbjct: 821 DEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSR-----------EVR 869 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + + KI GD++ GV +V+V++A KR I+ GDKMAG Sbjct: 870 DTSLRVPHGGDGIVRDV------KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAG 923 Query: 1093 RHGNKGIVSRILPC 1106 RHGNKG+VSRI+P Sbjct: 924 RHGNKGVVSRIVPR 937 >gi|229830154|ref|ZP_04456223.1| hypothetical protein GCWU000342_02261 [Shuttleworthia satelles DSM 14600] gi|229791452|gb|EEP27566.1| hypothetical protein GCWU000342_02261 [Shuttleworthia satelles DSM 14600] Length = 1326 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 434/967 (44%), Positives = 599/967 (61%), Gaps = 66/967 (6%) Query: 4 GVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVF 63 +V +G G VR + ++ E++++P+ I VQ+ SY FL +EG++ AF + Sbjct: 7 HLVKSGKG-VRMSYKRSKEVLEMPNFIAVQRDSYKWFL----------DEGMKEAFDDIS 55 Query: 64 PITAFSGAAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKS 121 PI+ FSG LEFV + D K+ + +C RD TY+ PLK+ +RL K Sbjct: 56 PISDFSGHLSLEFVGFRLCTDEIKYTIPECKARDTTYSAPLKVKVRLY---------NKE 106 Query: 122 IKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYA 181 +I E I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++ D + GK L+ Sbjct: 107 TDEINEHEIFMGDLPLMTETGTFVINGAERVIVSQLVRSPGIYYGIDHDKI---GKELFT 163 Query: 182 CRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGM-DSEEILSTFYP--KIVY 238 +IP++G W++ E DS D+ +VR+DR RKVP+T + ALG+ ++EI+ F KI+ Sbjct: 164 ATVIPNRGAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGLGSNQEIIEMFGEEPKILA 223 Query: 239 SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQV-IESGKKLTSGLLKSLKEKGVKFLG 297 S D + G + I GE + +ES + L SG+ + + +G Sbjct: 224 SFEKDTSITEQAPQGSYEGG-LLELYKKIRPGEPLTVESAESLISGMFFDPRRYDLAKVG 282 Query: 298 ITS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYV 349 + +AED+V+ TGEI AG +D++ + I ++ + Sbjct: 283 RYKFNKKLALRKRINKQVLAEDVVDQSTGEILASAGSRVDQELADRIQNAGV-------- 334 Query: 350 DSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409 ++ T K + ++DI + D + + E ++ + + + + Sbjct: 335 ------PFVWIQTETRNVKVLSNLMVDIRAHVDIDDPRAYGINEKVYYPVLEQLMRENPN 388 Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469 ++ R D RHI ++DI A I + L G G DDID+LGNRR+R+VGE Sbjct: 389 REDLLEAIRRDAHDLI--PRHITRDDIFASINYNMHLEYGLGNDDDIDHLGNRRIRAVGE 446 Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529 +L+NQYR+GL RMER ++ER+S+ D++++ PQ LIN KPV +AV EFF SSQLSQ + Sbjct: 447 LLQNQYRIGLSRMERVVRERMSTQDVETISPQSLINIKPVTAAVKEFFGSSQLSQFMDQN 506 Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589 N L +TH RRLSALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+ Sbjct: 507 NPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPVETPEGPNIGLINSLASY 566 Query: 590 ARVNAYGFIETPYRKVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEEL 644 AR+N YGFIE PYR + + +VT +VVY++A EE+N ++AQAN LD DG F + Sbjct: 567 ARINEYGFIEAPYRVIDKSDADNPRVTEEVVYMAADEEDNYHVAQANEPLDADGHFVHKQ 626 Query: 645 VFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLL 704 V R E R D++D SP+ V S+A +LIPFL+NDD+NR LMG NMQRQAVPLL Sbjct: 627 VSGRFRDETQTYDRGAFDYMDVSPRMVFSVATALIPFLQNDDANRALMGSNMQRQAVPLL 686 Query: 705 KAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRL 764 EAP VGTGME A SG ++A+ AG VE ++ RI+I++ +G G D Y L Sbjct: 687 TTEAPVVGTGMEPKTAVDSGVCVLARAAGTVEAAESNRIIIKTDDG-------GRDEYLL 739 Query: 765 MKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFE 824 KF+RSNQ+ C NQRP+V GD V ++IADGPST G+LALG+N L+ FM W GYN+E Sbjct: 740 TKFERSNQSNCYNQRPIVFKGDRVEAGEVIADGPSTSRGELALGKNPLIGFMTWEGYNYE 799 Query: 825 DSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 D++L+SE +V DV+TSIHIEE+E +RDTKLGPEEITRD+P V +E LK++DE GII + Sbjct: 800 DAVLLSENLVENDVYTSIHIEEYETESRDTKLGPEEITRDVPGVGDEALKDLDENGIIRI 859 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 GAEV GDILVGK+TPKGE+ +T EEKLLRAIFGEKA +VRDTSL+VP G G VVD +I Sbjct: 860 GAEVRSGDILVGKVTPKGETELTAEEKLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKI 919 Query: 945 FNRHGID 951 F R D Sbjct: 920 FTRENGD 926 Score = 542 bits (1397), Expect = e-151, Method: Composition-based stats. Identities = 244/1040 (23%), Positives = 395/1040 (37%), Gaps = 82/1040 (7%) Query: 369 DRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDV 428 + LL++Y+ +RPG+ T AES+ + +FFD +YDL+ VGR K N +L L + Sbjct: 239 SYEGGLLELYKKIRPGEPLTVESAESLISGMFFDPRRYDLAKVGRYKFNKKLALRKRINK 298 Query: 429 RHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKE 488 + + ++ + ++ + + D + N V V + R + + Sbjct: 299 QVLAEDVVDQSTGEILASAGSRVDQELADRIQNAGVPFV-------WIQTETRNVKVLS- 350 Query: 489 RISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR-LSALGQG 547 VDI + + D A + V + E+ N + RR L Sbjct: 351 -NLMVDIRAHVDIDDPRAYGINEKVYYPVLE---QLMRENPNREDLLEAIRRDAHDLIPR 406 Query: 548 GVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD 607 + R + YG + N + ++ + + R V + Sbjct: 407 HITRDDIFASINYNMHLEYGLGNDDDIDHLGN-RRIRAVGELLQNQYRIGLSRMERVVRE 465 Query: 608 GKVTNDVVYLSAMEEENRYIAQANSS----------LDEDGSFTEELVFCRC-------- 649 T DV +S N A + + EL R Sbjct: 466 RMSTQDVETISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSALGPGG 525 Query: 650 -AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 + + + + V L N ++ + ++A Sbjct: 526 LSRDRAGFEVRDVHYTHYGRMCPVETPEGPNIGLINSLASYARI------NEYGFIEAPY 579 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 + + +A V + + + SG + Sbjct: 580 RVIDKSDADNPRVTEEVVYMAADEEDNYHVAQANEPLDADGHFVHKQVSGRFRDETQTYD 639 Query: 769 RSNQNTC-VNQRPL--VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 R + V+ R + V + A+ +L P G E Sbjct: 640 RGAFDYMDVSPRMVFSVATALIPFLQNDDANRALMGSNMQRQAVPLLTTEAPVVGTGMEP 699 Query: 826 SMLISER-MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICV 884 + V ++ E + T G + ++ I+ Sbjct: 700 KTAVDSGVCVLARAAGTVEAAESNRIIIKTDDGGRDEYLLTKFERSNQSNCYNQRPIVFK 759 Query: 885 GAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944 G V G+++ + + + L + + D L + V V Sbjct: 760 GDRVEAGEVIADGPSTSR-GELALGKNPLIGFMTWEGYNYEDAVLLSENLVENDVYTSIH 818 Query: 945 FNRHGIDKNERSISVEREQIE------LLARDKDDEQVILDRNIYSRLMEILCGQNAVSG 998 + + + + E + +D DE I+ R +IL G+ G Sbjct: 819 IEEYETESRDTKLGPEEITRDVPGVGDEALKDL-DENGIIRIGAEVRSGDILVGKVTPKG 877 Query: 999 PKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIE 1058 L + E R E + KI Sbjct: 878 ETELTAEEKLLRAIFGEKAR-----------------EVRDTSLKVPHGEYGIVVDAKIF 920 Query: 1059 KIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPV 1118 + GD++ PGV + V++++A KR I GDKMAGRHGNKG+VSR+LP EDMPFL +G P+ Sbjct: 921 TRENGDELNPGVNKAVRIYIAQKRKIGPGDKMAGRHGNKGVVSRVLPVEDMPFLPNGRPL 980 Query: 1119 DIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGT 1178 DIVLNPLGVPSRMN+GQ+ E HL A LG I++ + D + +I + Sbjct: 981 DIVLNPLGVPSRMNIGQVLEIHLSLAAKALGLNIETPVFDGASEREIGDTLEMANDYVNE 1040 Query: 1179 GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYD 1238 K + + ++ + + + + G+ L D Sbjct: 1041 PWEDFKNKYQEILDQKTMDYLSENRGHRA--------------LWKGVPISRDGKVQLRD 1086 Query: 1239 GLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEME 1298 G TG+PFD P T+G+++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEME Sbjct: 1087 GRTGQPFDGPTTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1146 Query: 1299 VWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALG 1358 VW ++AYGAA+ LQE+LT+KSDDVVGR + YE+I+ G + + GTPESF V++KE+QAL Sbjct: 1147 VWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIIKGENIPDPGTPESFKVMLKELQALA 1206 Query: 1359 LSIDLENSRTKNSAKMEEIP 1378 L +++ + + ME Sbjct: 1207 LDVNVLDDSGREVKLMESTE 1226 >gi|330940876|gb|EGH43834.1| DNA-directed RNA polymerase subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 621 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 350/624 (56%), Positives = 473/624 (75%), Gaps = 5/624 (0%) Query: 744 VIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLG 803 V+R + +++ +GVDIY L K+ RSNQNTC+NQRPLV GD V+R+DI+ADGPSTD+G Sbjct: 2 VVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDRVQRSDIMADGPSTDMG 61 Query: 804 DLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITR 863 LALG+NM +AFM W+G+NFEDS+ +SER+V ED FT+IHI+E +ARDTKLGPEEIT Sbjct: 62 GLALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITA 121 Query: 864 DIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVD 923 DIPNV E L +DE GI+ VGAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA D Sbjct: 122 DIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 181 Query: 924 VRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIY 983 V+DTSLRVP+G GTV+DV++F R G++++ R++S+E+ Q++ + +D ++E I++ + Sbjct: 182 VKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDEIRKDLNEEFRIVEGATF 241 Query: 984 SRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYE 1043 RL L G+ A G G KK ++++++ QW++ + ++ + +E + Sbjct: 242 ERLRSALVGRVAEGG-AGLKKGQEITNEVLDGLEHGQWFKLRMAEDALNEQLEKAQAYIV 300 Query: 1044 TSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRI 1103 + +L+D+F++K K+Q GDD+ PGVL++VKV++A++R IQ GDKMAGRHGNKG+VS I Sbjct: 301 DRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVI 360 Query: 1104 LPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANG 1163 +P EDMP +GTPVDIVLNPLGVPSRMNVGQI ETHLG A GLG+KI ++ + + Sbjct: 361 MPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMLEEQRK-- 418 Query: 1164 DISPLRSFLEKVIGT-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSM 1222 ++ LR FL ++ G E + D D+ +L +A+ ++GVP++TPVFDGA E I +M Sbjct: 419 -VAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLRNGVPMATPVFDGAKESEIKAM 477 Query: 1223 LRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQP 1282 L++AD+ ESGQ L+DG TG F+R VTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQP Sbjct: 478 LKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 537 Query: 1283 LGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETG 1342 LGGK+ GGQR GEMEVW ++AYGAAY LQEMLT+KSDDV GRT++Y++IV G+ E G Sbjct: 538 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPG 597 Query: 1343 TPESFNVLVKEMQALGLSIDLENS 1366 PESFNVL+KE+++LG+ IDLE Sbjct: 598 MPESFNVLIKEIRSLGIDIDLETE 621 >gi|312794076|ref|YP_004026999.1| DNA-directed RNA polymerase subunit beta [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181216|gb|ADQ41386.1| DNA-directed RNA polymerase, beta subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1230 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 431/959 (44%), Positives = 601/959 (62%), Gaps = 60/959 (6%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 V G R +GK E++D+P L+E+QK S+ FL +EGL+ K + PI Sbjct: 7 VQYG-KVQRMSYGKVKEVLDLPYLLEIQKKSFQWFL----------DEGLREVLKEISPI 55 Query: 66 TAFSGAAMLEFVSYEF-DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKD 124 +S +LEFV Y F PPK+ +C RD TYA PLK+ +RLI K + Sbjct: 56 KDYSETLLLEFVDYYFDGPPKYSEQECKERDATYARPLKVKVRLI---------NKETGE 106 Query: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRI 184 IKEQ IYMG+ P+MT+ GTF+I G +R++VSQL RSPG +F + G+ +++ + Sbjct: 107 IKEQDIYMGEFPIMTETGTFIINGAERVIVSQLIRSPGCYFASSIDKQ---GRKIFSGTL 163 Query: 185 IPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGD 243 IP++G W++ E D+ +++ VR+DR RKV +T+ L A G+ +++ I F + Sbjct: 164 IPNRGAWLEFETDASELLSVRLDRTRKVSLTTLLKAFGLYNQQLIFEKFGEDERLKASLE 223 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS-- 300 + + A + + GE +E+ + L + + + +G Sbjct: 224 KEANKGELGNPVENA-LLEVYRRLRPGEPPNVENARNLLYNMFFDPRRYDLAKVGRYKFN 282 Query: 301 ------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 + A+D+V+ +TGEI ++ G+VI + I + I ++ + + Sbjct: 283 KKLSLWKRIFNKRAAQDVVDPKTGEILVKEGEVITREIALNIQDAGINEVWVYADEERTF 342 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 NT+ D+ + + ++ V + + D+S + R+ Sbjct: 343 KVVGNNTVKLDRYVEFD------VSDLNIKELVYKPVLDDILKTTN------DVSEIKRL 390 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DI A + L+ G GT DDID+LGNRRVR+VGE+L+NQ Sbjct: 391 IKEK----ERELVPYCLTIDDIYAATSYFLGLKYGIGTTDDIDHLGNRRVRAVGELLQNQ 446 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL RMER I+ER++ DID+V PQ LIN +PV +A+ EFF SS LSQ + VN L+ Sbjct: 447 FRIGLARMERVIRERMNIHDIDTVTPQTLINIRPVTAAIKEFFGSSPLSQFMDQVNPLAA 506 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +T+ RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++ARVN Sbjct: 507 LTNKRRLSALGPGGLSRDRAGFEVRDVHHSHYGRMCPIETPEGPNIGLITSLATYARVNE 566 Query: 595 YGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGE 652 YGF+ETPYRKV + +VT++VVYL+A EE+ IAQA +DE+G F + V R E Sbjct: 567 YGFLETPYRKVDKKEARVTDEVVYLTADEEDTYKIAQATEPVDEEGRFINQRVTVRFGEE 626 Query: 653 EILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVG 712 I V + ++D ID SPKQ+VS++ SLIPFLENDD+NR LMG NMQRQAVPLL EAP +G Sbjct: 627 IIEVDKHEVDLIDISPKQIVSVSTSLIPFLENDDANRALMGSNMQRQAVPLLTTEAPIIG 686 Query: 713 TGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 TG+E A SG I+AK+ G+VE+V + IVIR+ +G D Y L+KF+R+NQ Sbjct: 687 TGVEYRAAVDSGVCILAKKDGVVEKVSSDEIVIRNNDGTKDA-------YHLLKFKRTNQ 739 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 TC NQRP+V+ G EV+ ++IADGPSTD G+LALG+N+LVAFMPW GYN+ED++LISER Sbjct: 740 GTCFNQRPIVRKGQEVKAGEVIADGPSTDHGELALGKNVLVAFMPWEGYNYEDAILISER 799 Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ +K++DE GII +GAEV GD Sbjct: 800 LVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGEDAIKDLDERGIIRIGAEVKSGD 859 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 ILVGK+TPKGE+ +T EE+LLRAIFGEKA + RDTSLRVP G G VVDV++F+R D Sbjct: 860 ILVGKVTPKGETELTAEERLLRAIFGEKARETRDTSLRVPHGEGGIVVDVKVFSRDKGD 918 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 164/538 (30%), Positives = 233/538 (43%), Gaps = 79/538 (14%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 G ++ + ++ I+ G EV G+++ + + + + Sbjct: 720 RNNDGTKDAYHLLKFKRTNQGTCFNQRPIVRKGQEVKAGEVIADGPST-DHGELALGKNV 778 Query: 913 LRAIFGEKAVDVRDTSLRVPS------GVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 L A + + D L S + + R E E Sbjct: 779 LVAFMPWEGYNYEDAILISERLVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGED 838 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 +D DE+ I+ + +IL G+ G L + E R Sbjct: 839 AIKDL-DERGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRAIFGEKAR-------- 889 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 E+ K+ GD++PPGV ++V+V+VA KR I Sbjct: 890 ---------ETRDTSLRVPHGEGGIVVDVKVFSRDKGDELPPGVNQLVRVYVAQKRKISV 940 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNK GV SR+ Sbjct: 941 GDKMAGRHGNK----------------------------GVISRI--------------- 957 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 ++ + ++ V+ +++ G V Sbjct: 958 ---LPVEDMPFLPDGTP--------VDIVLNPLGVPSRMNIGQILETHLGYAAKALGWKV 1006 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA EE I L++A L+ +G++ILYDG TGEPFD VTVGY+YMLKL H+V DK Sbjct: 1007 ATPVFDGAKEEDIEEALKLAGLNPTGKTILYDGRTGEPFDNEVTVGYMYMLKLVHLVDDK 1066 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDV GR Sbjct: 1067 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVTGRV 1126 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 + YE+IV G + E G PESF VLVKE+Q+L L + L + K E + + + + Sbjct: 1127 KTYEAIVKGENIPEPGIPESFKVLVKELQSLCLDVKLLSEDNKEIELKESVDEDEQPQ 1184 >gi|210611077|ref|ZP_03288719.1| hypothetical protein CLONEX_00909 [Clostridium nexile DSM 1787] gi|210152173|gb|EEA83180.1| hypothetical protein CLONEX_00909 [Clostridium nexile DSM 1787] Length = 1313 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 431/953 (45%), Positives = 595/953 (62%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++ +P+LIEVQK SY FL + GL+ F+ + PI+ +SG Sbjct: 44 KSSRMSYARQKEVLQMPNLIEVQKDSYQWFL----------DAGLKEVFEDISPISDYSG 93 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL K +I E Sbjct: 94 HLSLEFVDFTLCEDDVKYTIEECKERDATYAAPLKVRVRLY---------NKETDEINEH 144 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 145 EIFMGDLPLMTATGTFVINGAERVIVSQLVRSPGIYYAIAHDKV---GKELYSSTVIPNR 201 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG+ + EIL F KI+ S D Sbjct: 202 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGIGTNPEILELFGEEPKILASFGKDVA 261 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 262 ENYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDARRYDLAKVGRYKFNKKLALQ-NRI 320 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED+VN TGE+ E G+ + + I ++ + + I VD N + + ++ Sbjct: 321 TGQVLAEDVVNAITGEVIAEKGEKLSREKATAIQNAAVPYVWI-DVDGEERNIKVLSNMM 379 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D A++DI D V E+++ + + + +K + N+ Sbjct: 380 VDLG-----AVVDI-------DPEEVGVTEAVYYPVLAGLLEETAGDIDELKEEIHKNIH 427 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G GT DDID+LGNRR+R+VGE+L+NQYR+GL R+E Sbjct: 428 -ELIPKHITKEDILASINYNIHLEYGMGTDDDIDHLGNRRIRAVGELLQNQYRIGLSRLE 486 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D++ V PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 487 RVVRERMTTQDLEGVSPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 546 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++AR+N YGFIE PYR Sbjct: 547 LGPGGLSRDRAGFEVRDVHYSHYGRMCPVETPEGPNIGLINSLATYARINEYGFIEAPYR 606 Query: 604 KV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 K+ + VT++VVY++A EE+N ++AQAN LDE+G F + V R E R Sbjct: 607 KIDKADPKNPVVTDEVVYMTADEEDNYHVAQANEPLDEEGHFIHKNVAGRYREETQEYER 666 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 D++D SPK V S+A +LIPFLENDD R LMG NMQRQAVPL+ EAP VGTG+E+ Sbjct: 667 TAFDYMDVSPKMVFSVATALIPFLENDDPTRALMGSNMQRQAVPLMMTEAPVVGTGIETT 726 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG IVA++AG++E+ + IV++ +G Y+L KF RSNQ+ C NQ Sbjct: 727 AAVDSGVCIVAEQAGVIERSTSKEIVVKHDDGTK-------KTYKLTKFLRSNQSNCYNQ 779 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V G++V +IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V +DV Sbjct: 780 RPIVVKGEKVEAGQVIADGPSTSNGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQDDV 839 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TSIHIEE+E ARDTKLGPEEITRDIP V ++ LK++D+ GII +GAEV GDILVGK+ Sbjct: 840 YTSIHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDLDDRGIIRIGAEVRAGDILVGKV 899 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R D Sbjct: 900 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTRENGD 952 Score = 565 bits (1457), Expect = e-158, Method: Composition-based stats. Identities = 267/1182 (22%), Positives = 441/1182 (37%), Gaps = 86/1182 (7%) Query: 233 YPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKG 292 Y K G V I+ E+VI S + G+ ++ Sbjct: 134 YNKETDEINEHEIFMGDLPLMTATGTFV------INGAERVIVSQLVRSPGIYYAIAHDK 187 Query: 293 VKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSV 352 V +S + + Y+ I I P + ++ Sbjct: 188 VGKELYSSTVIPNRGAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGIGTNPEI-LELF 246 Query: 353 NNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVG 412 I + D ++ ++ LL++Y+ +RPG+ AES+ +FFD+ +YDL+ VG Sbjct: 247 GEEPKILASFGKDVAENYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDARRYDLAKVG 306 Query: 413 RVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLK 472 R K N +L L + + ++ + AI G+ + + L + ++ Sbjct: 307 RYKFNKKLALQNRITGQVLAEDVVNAIT--------GEVIAEKGEKLSREKATAIQNAAV 358 Query: 473 NQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSL 532 + + ER+IK + + + V AV + L + ++ L Sbjct: 359 PYVWIDVDGEERNIKVLSNMMVDLGAVVDIDPEEVGVTEAVYYPVLAGLLEETAGDIDEL 418 Query: 533 SRITHTRRLSALGQGGVARARAGVEMRDVHPTH-YGRICPAETSEGHNIGLVSSLTSFAR 591 H + + ++H + G + I V L + Sbjct: 419 KEEIHKNIHELIPKHITKEDILASINYNIHLEYGMGTDDDIDHLGNRRIRAVGELL---Q 475 Query: 592 VNAYGFIETPYRKVCDGKVTND-----------VVYLSAMEEENRYIAQANSSLDED--- 637 + R V + T D + ++A +E +Q + +D++ Sbjct: 476 NQYRIGLSRLERVVRERMTTQDLEGVSPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPL 535 Query: 638 GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQ 697 G T + + R + D + P N L Sbjct: 536 GELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPVETPEGPNIGLINSLATYARI 595 Query: 698 RQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRS----VEGDLD 753 + + ++ V + A A + + Sbjct: 596 NEYGFIEAPYRKIDKADPKNPVVTDEVVYMTADEEDNYHVAQANEPLDEEGHFIHKNVAG 655 Query: 754 PSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLV 813 Y F + + + + + +D +++ A+ M Sbjct: 656 RYREETQEYERTAFDYMDVSPKMVFSVATALIPFLENDDPTRALMGSNMQRQAVPLMMTE 715 Query: 814 AFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 A + G ++ +V+E E++ + G ++ + + Sbjct: 716 APVVGTGIETTAAVDSGVCIVAEQAGVIERSTSKEIVVKHD-DGTKKTYKLTKFLRSNQS 774 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPS 933 ++ I+ G +V G ++ + M + L + + D L Sbjct: 775 NCYNQRPIVVKGEKVEAGQVIADGPSTSN-GEMALGKNPLIGFMTWEGYNYEDAVLL--- 830 Query: 934 GVSGTVVDVRIFNRHGIDKNERSISVE--REQI--------ELLARDKDDEQVILDRNIY 983 V D + H + + + E+I + +D DD I+ Sbjct: 831 -SERLVQDDVYTSIHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDLDDR-GIIRIGAE 888 Query: 984 SRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYE 1043 R +IL G+ G L + E R E + Sbjct: 889 VRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRDTSLK 931 Query: 1044 TSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRI 1103 K+ + GD++ PGV + V++++A KR I GDKMAGRHGNKG+VSR+ Sbjct: 932 VPHGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGVVSRV 991 Query: 1104 LPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANG 1163 LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG I + + D Sbjct: 992 LPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNIATPVFDGANEI 1051 Query: 1164 DISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSML 1223 DI E + + + V + + Sbjct: 1052 DIMDTLDLAND-YVNLEWEEFEKKHGAELLPEVLQYLSD-------------NREHRKLW 1097 Query: 1224 RMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPL 1283 + L G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARSTG YSLVTQQPL Sbjct: 1098 KGVPLSRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPL 1157 Query: 1284 GGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGT 1343 GGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ G++ E G Sbjct: 1158 GGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGDNIPEPGI 1217 Query: 1344 PESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 PESF VL+KE+Q+LGL + + ME I D+ + +L Sbjct: 1218 PESFKVLLKELQSLGLDVRVLREDQTEVEIMETI-DYGETDL 1258 >gi|313891110|ref|ZP_07824729.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313120473|gb|EFR43593.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 1188 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 424/963 (44%), Positives = 587/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DTGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKIGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E D+KDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDAKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIIDIFGESDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG + +E I D+ Sbjct: 278 YKINKKLNIKTRLLNQVIAENLVDSETGEILVEAGTEMTRDVIESIEEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N AY N D + +L ++V+ P D Sbjct: 332 --NKFAYTPN----DYAVVTEPVVLQKFKVVSPLDP------------------------ 361 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 362 --DKVVTIVGNASPDDRVRALTPADILAEMSYFLNLSEGIGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVC--DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV G VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRSKGVVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFAASTVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PFVGTGMEYQAAHDSGAAVIAQHDGKVVFSDAEKVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD + + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIIEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR++PNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREVPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 169/508 (33%), Positives = 234/508 (46%), Gaps = 79/508 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG + GD + + M + + A + + D + V V Sbjct: 725 LVKVGDIIEKGDFIADGPS-MENGEMALGQNPVVAYMTWEGYNFEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER------EQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 + + + E E +D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREVPNVGEEALKDL-DEMGIIRIGAEVKEGDILVGKV 842 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K L + + R +V+ + + + Sbjct: 843 TPKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGIVRDV----- 886 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L D Sbjct: 887 -KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPD 945 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D + D+ Sbjct: 946 GTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASAEDLWETVEEAGM 1005 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 T ++DG Sbjct: 1006 DSDAK----------------------------TVLYDG--------------------- 1016 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1017 -----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRF 1071 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+ Sbjct: 1072 GEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKEL 1131 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNK 1382 Q+LGL + + + + + Sbjct: 1132 QSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|146317779|ref|YP_001197491.1| DNA-directed RNA polymerase subunit beta [Streptococcus suis 05ZYH33] gi|146319971|ref|YP_001199682.1| DNA-directed RNA polymerase subunit beta [Streptococcus suis 98HAH33] gi|223933064|ref|ZP_03625057.1| DNA-directed RNA polymerase, beta subunit [Streptococcus suis 89/1591] gi|253751036|ref|YP_003024177.1| DNA-directed RNA polymerase beta chain [Streptococcus suis SC84] gi|253752937|ref|YP_003026077.1| DNA-directed RNA polymerase beta chain [Streptococcus suis P1/7] gi|253754761|ref|YP_003027901.1| DNA-directed RNA polymerase beta chain [Streptococcus suis BM407] gi|158514126|sp|A4VSK2|RPOB_STRSY RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158514143|sp|A4VYU3|RPOB_STRS2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|145688585|gb|ABP89091.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Streptococcus suis 05ZYH33] gi|145690777|gb|ABP91282.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Streptococcus suis 98HAH33] gi|223898251|gb|EEF64619.1| DNA-directed RNA polymerase, beta subunit [Streptococcus suis 89/1591] gi|251815325|emb|CAZ50895.1| DNA-directed RNA polymerase beta chain [Streptococcus suis SC84] gi|251817225|emb|CAZ54951.1| DNA-directed RNA polymerase beta chain [Streptococcus suis BM407] gi|251819182|emb|CAR44349.1| DNA-directed RNA polymerase beta chain [Streptococcus suis P1/7] gi|292557579|gb|ADE30580.1| DNA-directed RNA polymerase, beta subunit [Streptococcus suis GZ1] gi|319757288|gb|ADV69230.1| DNA-directed RNA polymerase subunit beta [Streptococcus suis JS14] Length = 1190 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 416/963 (43%), Positives = 586/963 (60%), Gaps = 81/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DYGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V P++ F+ LEFV YE PK+ +++ D Y+ P+ +T RL+ K Sbjct: 51 DVLPVSNFTDTMELEFVGYELKEPKYTLEEARAHDANYSAPIYVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ G+ P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGEFPIMTEMGTFIINGAERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE ES + L + + + +G Sbjct: 219 NTIEKDI-HKNPADSRTDEALKEIYERLRPGEPKTAESSRSLLTARFFDPRRYDLAPVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE ++NGETGEI +EAG V+ LE++ D Sbjct: 278 YKINKKLNLRTRLLNQTLAEHVINGETGEIVLEAGTVLSRDVLEKVEAQ---------FD 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + LL ++++ P D Sbjct: 329 ELNLVEYIPN----DNAVLLEPVLLQKFKIVAPKDP------------------------ 360 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + ++VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 361 --ERVVTVIGNANPAENVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 418 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ R+GL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 419 LANQVRIGLTRMERNLRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 478 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 479 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 538 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRK+ G VTN++V+L+A EE+ +AQ+ S LDE+ F +++V R Sbjct: 539 HLNKYGFIQTPYRKIDRATGTVTNEIVWLTADEEDAYIVAQSTSPLDENNRFVDKIVMGR 598 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P + DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 599 HQGNNQEFPADSADFMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 658 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAAI+A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 659 PYVGTGMEYQAAHDSGAAIIAQHDGKVVYADADKVEVRREDGSLD-------VYHISKFR 711 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVK+GD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 712 RSNSGTAYNQRTLVKLGDIVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 771 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 772 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 831 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 832 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 891 Query: 949 GID 951 D Sbjct: 892 NGD 894 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 251/1096 (22%), Positives = 393/1096 (35%), Gaps = 177/1096 (16%) Query: 332 SLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFS 390 + + S +I ++ D + N ++ + +AL +IY +RPG+ T Sbjct: 195 LVRALGFSGDDEIFDIFGDSELVRNTIEKDIHKNPADSRTDEALKEIYERLRPGEPKTAE 254 Query: 391 VAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIA------------ 438 + S+ FFD +YDL+ VGR K+N +LNL T + + + I Sbjct: 255 SSRSLLTARFFDPRRYDLAPVGRYKINKKLNLRTRLLNQTLAEHVINGETGEIVLEAGTV 314 Query: 439 -IIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG----LLRMERSIKERISSV 493 +L + ++ ++ + N + +L ++++ R+ I + Sbjct: 315 LSRDVLEKVEAQFDELNLVEYIPNDNAVLLEPVLLQKFKIVAPKDPERVVTVIGNANPAE 374 Query: 494 DIDSVMPQD----LINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ +V P D + + + L R + + Sbjct: 375 NVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRIGLTRMERNL 434 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK----- 604 + + + P I P + G + N + R Sbjct: 435 RERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGP 494 Query: 605 -----------VCDGKVTNDVVYLSAMEEENRYIAQAN--SSLDEDGSFTEELVFCRCAG 651 V D T+ E I N SS + R Sbjct: 495 GGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFIQTPYRKID 554 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 +I ++ A + +A S P EN+ R + M R Sbjct: 555 RATGTVTNEIVWLTADEEDAYIVAQSTSPLDENN---RFVDKIVMGR------------- 598 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 G S + +V A + + + + + + Sbjct: 599 HQGNNQEFPADSADFMDVSPKQVVAVATACIPFLENDDSNRALMGANM------------ 646 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QR V D A T + A + G E Sbjct: 647 ------QR------QAVPLIDPKAPYVGTGMEYQAAHDSGAAIIAQHDGKVVYADADKVE 694 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 + HI +F R + G R ++ +G V G Sbjct: 695 VRREDGSLDVYHISKF----RRSNSGTAYNQRT----------------LVKLGDIVEKG 734 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 D + + M + + A + + D + V V + + Sbjct: 735 DFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESE 793 Query: 952 KNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKST 1006 + + E +I + D DE I+ + +IL G+ G K Sbjct: 794 TRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEE 853 Query: 1007 VLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDM 1066 L + + R +V+ + + + KI GD++ Sbjct: 854 RLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------KIFTRANGDEL 896 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DGTPVDI+LNPLG Sbjct: 897 QSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLG 956 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 957 VPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWSTVKEAGM------------ 1004 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + ++L G TGEPFD Sbjct: 1005 -----------------------------DSDAKTIL------YDG-------RTGEPFD 1022 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1023 NRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1082 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 A+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q+LGL + + + Sbjct: 1083 ASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDE 1142 Query: 1367 RTKNSAKMEEIPDFNK 1382 + + Sbjct: 1143 DNNEVELRDLDEGEDD 1158 >gi|153952853|ref|YP_001393618.1| DNA-directed RNA polymerase subunit beta [Clostridium kluyveri DSM 555] gi|219853518|ref|YP_002470640.1| hypothetical protein CKR_0175 [Clostridium kluyveri NBRC 12016] gi|189043853|sp|A5N4N9|RPOB_CLOK5 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765284|sp|B9DYA1|RPOB_CLOK1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|146345734|gb|EDK32270.1| RpoB [Clostridium kluyveri DSM 555] gi|219567242|dbj|BAH05226.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1234 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 431/955 (45%), Positives = 591/955 (61%), Gaps = 65/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F + EI +P+LIEVQ SY+ FL EGLQ F+ + PI ++ Sbjct: 9 KRTRMSFSRLKEIGHMPNLIEVQLDSYNWFL----------KEGLQEVFEDINPIQDYTA 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV Y+ D K+ V++C RD TYA PLK+ +RL+ K ++KEQ Sbjct: 59 NLNLEFVGYKLDMDNIKYSVEECKERDSTYAAPLKVKVRLL---------NKETGEVKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++D + GK L++ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDVSVDKT---GKNLFSSTVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCF 247 G W++ E DS +II+VRID+ RK+P+T + A+G ++ EI + F + Sbjct: 167 GAWLEYETDSNNIIYVRIDKTRKLPITILVRAMGHGTDTEITNFFGEDERLKATIEKDNT 226 Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD----- 301 L+ K + GE ++S + L L K + +G Sbjct: 227 KTHEEALLEIYK------RLRPGEPPTVDSARSLIESLFFDPKRYDLSRVGRYKFNKKLS 280 Query: 302 ---CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + D+VN ETGEI ++ G+ ID + +I I + I D+ Sbjct: 281 LHLRIVNQISTGDVVNPETGEILVQKGEKIDREKAVQIQQCGINSVDIEIEDTTLRVIGN 340 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418 + + D L V P L D Y R ++ Sbjct: 341 NFVNINNFIDFNIDDLNIKESVYYPA--------------LKQILDNYSSEESIREQIKK 386 Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478 ++ P +HI ++DI A + + L G G DDID+LGNRR+RSVGE+L+NQ+R+G Sbjct: 387 NIHNLIP---KHIIRDDIYATVSYELGLAYGVGHTDDIDHLGNRRLRSVGELLQNQFRIG 443 Query: 479 LLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHT 538 L RMER +KER++ D + + PQ LIN +PV +++ EFF SSQLSQ + N LS +TH Sbjct: 444 LSRMERVVKERMTIQDQEVITPQALINIRPVAASIKEFFGSSQLSQFMDQTNPLSELTHK 503 Query: 539 RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFI 598 RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A+VN YGFI Sbjct: 504 RRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFI 563 Query: 599 ETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656 ETPYRKV + VTN++VY++A EE+ I +AN +DE+G F + + R + I+V Sbjct: 564 ETPYRKVNKKEKIVTNEIVYMTADEEDEYLIGRANEPIDENGKFVDSKITVRDKEDVIVV 623 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P E +D++D SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E Sbjct: 624 PAEDVDYMDLSPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPVVGTGIE 683 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 A SG A+ AG+V V A I +R S G DIYRL+KFQRSNQ TC+ Sbjct: 684 YKAAVDSGVLPKARNAGVVSYVCANEIRVRRD------SDGGTDIYRLLKFQRSNQGTCI 737 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQRP+V+ G+ V++ ++ADGPSTDLG++ALG+N+ + F W GYN+ED+MLISE +V + Sbjct: 738 NQRPIVEKGEIVQQGTVLADGPSTDLGEIALGKNIRMGFTTWEGYNYEDAMLISEELVKK 797 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 DVFTSIHIEE+E ARDTKLGPEEITRDIPNV E+ LK+ID+ GII +GAEV GDILVG Sbjct: 798 DVFTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKDIDDRGIIKIGAEVRAGDILVG 857 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV++F R D Sbjct: 858 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRKNGD 912 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 188/572 (32%), Positives = 261/572 (45%), Gaps = 77/572 (13%) Query: 814 AFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGL 873 A + G ++ ++ + + ++ E+ R G +I R + Sbjct: 675 APVVGTGIEYKAAVDSGVLPKARNAGVVSYVCANEIRVRRDSDGGTDIYRLLKFQRSNQG 734 Query: 874 KNIDECGIICVGAEVNPGDILVGKITPKGE-----SPMTPEEKLLRAIFGEKAVDVRDTS 928 I++ I+ G V G +L + + E A+ + + Sbjct: 735 TCINQRPIVEKGEIVQQGTVLADGPSTDLGEIALGKNIRMGFTTWEGYNYEDAMLISEEL 794 Query: 929 LRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLME 988 ++ S + + R E E +D DD I+ R + Sbjct: 795 VKKDVFTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKDIDDR-GIIKIGAEVRAGD 853 Query: 989 ILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSI 1048 IL G+ G L + E R E Sbjct: 854 ILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRDTSLRVPHGE 896 Query: 1049 LEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCED 1108 K+ + GD++ PGV ++V+ ++A KR I GDKMAGRHGNKG++SR+LP ED Sbjct: 897 AGIIVDVKVFTRKNGDELSPGVNKLVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEED 956 Query: 1109 MPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPL 1168 MPFL DG P++I LNPLGVPSRMN+GQ+ E HLGWA LG I + + D DI Sbjct: 957 MPFLPDGRPLEICLNPLGVPSRMNIGQVLEVHLGWAASELGWHIATPVFDGATEEDIIEC 1016 Query: 1169 RSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADL 1228 G E+ Sbjct: 1017 LKKA----------------------------------------GYRED----------- 1025 Query: 1229 DESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSN 1288 G++ILYDG TGEPF+RPVTVGY+Y+LKL H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1026 ---GKTILYDGRTGEPFNRPVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQ 1082 Query: 1289 RGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFN 1348 GGQR GEMEVW ++AYGAA+ LQE+LT+KSDDVVGR + YE+IV G + E G PESF Sbjct: 1083 FGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFK 1142 Query: 1349 VLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 VL+KE+QAL L + + N + E + + Sbjct: 1143 VLIKELQALCLDVKVLNDDNQEIKLKESVDEE 1174 >gi|19745277|ref|NP_606413.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes MGAS8232] gi|94989594|ref|YP_597694.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes MGAS10270] gi|41018073|sp|Q8P2Y3|RPOB_STRP8 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158564190|sp|Q1JJ23|RPOB_STRPD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|19747374|gb|AAL96912.1| putative DNA-dependent RNA polymerase subunit beta [Streptococcus pyogenes MGAS8232] gi|94543102|gb|ABF33150.1| DNA-directed RNA polymerase beta chain [Streptococcus pyogenes MGAS10270] Length = 1188 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 427/963 (44%), Positives = 587/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DSGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGESDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG + +E I D+ Sbjct: 278 YKVNKKLNIKTRLLNQIIAENLVDAETGEILVEAGTEMTRSVIESIEEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVSPIDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D D + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNDVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGTVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFSASVVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ IR +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEIRRQDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 178/590 (30%), Positives = 255/590 (43%), Gaps = 80/590 (13%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTSIHIEEFEVMARDTKLGP 858 ++ P+ G E S V + + E + + G Sbjct: 643 MGANMQRQAVPLIDPKAPYVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEIRRQDGS 702 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 ++ ++ ++ VG V GD + + M + + A Sbjct: 703 LDVYHITKFRRSNSGTAYNQRTLVKVGDIVEKGDFIADGPS-MENGEMALGQNPVVAYMT 761 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQI----ELLARDKD 972 + + D + V V + + + E +I E +D Sbjct: 762 WEGYNFEDAVIMSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDL- 820 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 DE I+ + +IL G+ G K L + + R +V+ Sbjct: 821 DEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSR-----------EVR 869 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + + KI GD++ GV +V+V++A KR I+ GDKMAG Sbjct: 870 DTSLRVPHGGDGIVRDV------KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAG 923 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG+VSRI+P EDMP+L DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I Sbjct: 924 RHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHI 983 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D ++ D+ T ++D Sbjct: 984 ATPVFDGASSEDLWDTVREAGMDSDAK----------------------------TVLYD 1015 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G TGEPFD V+VG +YM+KL+HMV DK++ARS Sbjct: 1016 G--------------------------RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSV 1049 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I Sbjct: 1050 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAI 1109 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 G + G PESF VLVKE+Q+LGL + + + + + Sbjct: 1110 TKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|158564250|sp|Q1JNX8|RPOB_STRPC RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Length = 1197 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 427/963 (44%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DSGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGESDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG + +E I D+ Sbjct: 278 YKVNKKLNIKTRLLNQIIAENLVDAETGEILVEAGTEMTRSVIESIEEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVSPIDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D D + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNDVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV +VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGRVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFSASVVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ IR +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEIRRQDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 166/599 (27%), Positives = 249/599 (41%), Gaps = 89/599 (14%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTSIHIEEFEVMARDTKLGP 858 ++ P+ G E S V + + E + + G Sbjct: 643 MGANMQRQAVPLIDPKAPYVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEIRRQDGS 702 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 ++ ++ ++ VG V GD + + M + + A Sbjct: 703 LDVYHITKFRRSNSGTAYNQRTLVKVGDIVEKGDFIADGPS-MENGEMALGQNPVVAYMT 761 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQI----ELLARDKD 972 + + D + V V + + + E +I E +D Sbjct: 762 WEGYNFEDAVIMSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDL- 820 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 DE I+ + +IL G+ G K L + + R +V+ Sbjct: 821 DEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSR-----------EVR 869 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + + KI GD++ GV +V+V++A KR I+ GDKMAG Sbjct: 870 DTSLRVPHGGDGIVRDV------KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAG 923 Query: 1093 RHGNKGIVSRILP---------CEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGW 1143 RHGNKG+VSRI+P EDMP+L D Sbjct: 924 RHGNKGVVSRIVPKGVVSRIVPVEDMPYL-----PD------------------------ 954 Query: 1144 ACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSG 1203 G + ++N ++ I + + A G Sbjct: 955 -----GTPVDIMLNPLGVPSRMN------------------IGQVMELHLGMAARNL--G 989 Query: 1204 VPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMV 1263 + ++TPVFDGA E + +R A +D +++LYDG TGEPFD V+VG +YM+KL+HMV Sbjct: 990 IHIATPVFDGASSEDLWDTVREAGMDSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMV 1049 Query: 1264 SDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVV 1323 DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+ VLQE+LT KSDDV Sbjct: 1050 DDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVT 1109 Query: 1324 GRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 GR + YE+I G + G PESF VLVKE+Q+LGL + + + + + Sbjct: 1110 GRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDDNEVELRDLDEGEDD 1168 >gi|330831972|ref|YP_004400797.1| DNA-directed RNA polymerase subunit beta [Streptococcus suis ST3] gi|329306195|gb|AEB80611.1| DNA-directed RNA polymerase subunit beta [Streptococcus suis ST3] Length = 1190 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 416/963 (43%), Positives = 586/963 (60%), Gaps = 81/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DYGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V P++ F+ LEFV YE PK+ +++ D Y+ P+ +T RL+ K Sbjct: 51 DVLPVSNFTDTMELEFVGYELKEPKYTLEEARAHDANYSAPIYVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ G+ P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGEFPIMTEMGTFIINGAERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE ES + L + + + +G Sbjct: 219 NTIEKDI-HKNPADSRTDEALKEIYERLRPGEPKTAESSRSLLTARFFDPRRYDLAPVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE ++NGETGEI +EAG V+ LE++ D Sbjct: 278 YKINKKLNLRTRLLNQTLAEHVINGETGEIVLEAGTVLSRDVLEKVEAQ---------FD 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + LL ++++ P D Sbjct: 329 ELNLVEYIPN----DNAVLLEPVLLQKFKIVAPKDP------------------------ 360 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + ++VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 361 --ERVVTVIGNANPAENVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 418 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ R+GL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 419 LANQVRIGLTRMERNLRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 478 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 479 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 538 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRK+ G VTN++V+L+A EE+ +AQ+ S LDE+ F +++V R Sbjct: 539 HLNKYGFIQTPYRKIDRATGTVTNEIVWLTADEEDAYIVAQSTSPLDENNRFVDKIVMGR 598 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P + DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 599 HQGNNQEFPADSADFMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 658 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAAI+A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 659 PYVGTGMEYQAAHDSGAAIIAQHDGKVVYADADKVEVRREDGSLD-------VYHISKFR 711 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVK+GD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 712 RSNSGTAYNQRTLVKLGDIVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 771 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 772 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 831 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 832 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 891 Query: 949 GID 951 D Sbjct: 892 NGD 894 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 251/1096 (22%), Positives = 393/1096 (35%), Gaps = 177/1096 (16%) Query: 332 SLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFS 390 + + S +I ++ D + N ++ + +AL +IY +RPG+ T Sbjct: 195 LVRALGFSGDDEIFDIFGDSELVRNTIEKDIHKNPADSRTDEALKEIYERLRPGEPKTAE 254 Query: 391 VAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIA------------ 438 + S+ FFD +YDL+ VGR K+N +LNL T + + + I Sbjct: 255 SSRSLLTARFFDPRRYDLAPVGRYKINKKLNLRTRLLNQTLAEHVINGETGEIVLEAGTV 314 Query: 439 -IIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG----LLRMERSIKERISSV 493 +L + ++ ++ + N + +L ++++ R+ I + Sbjct: 315 LSRDVLEKVEAQFDELNLVEYIPNDNAVLLEPVLLQKFKIVAPKDPERVVTVIGNANPAE 374 Query: 494 DIDSVMPQD----LINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ +V P D + + + L R + + Sbjct: 375 NVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRIGLTRMERNL 434 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK----- 604 + + + P I P + G + N + R Sbjct: 435 RERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGP 494 Query: 605 -----------VCDGKVTNDVVYLSAMEEENRYIAQAN--SSLDEDGSFTEELVFCRCAG 651 V D T+ E I N SS + R Sbjct: 495 GGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFIQTPYRKID 554 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 +I ++ A + +A S P EN+ R + M R Sbjct: 555 RATGTVTNEIVWLTADEEDAYIVAQSTSPLDENN---RFVDKIVMGR------------- 598 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 G S + +V A + + + + + + Sbjct: 599 HQGNNQEFPADSADFMDVSPKQVVAVATACIPFLENDDSNRALMGANM------------ 646 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QR V D A T + A + G E Sbjct: 647 ------QR------QAVPLIDPKAPYVGTGMEYQAAHDSGAAIIAQHDGKVVYADADKVE 694 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 + HI +F R + G R ++ +G V G Sbjct: 695 VRREDGSLDVYHISKF----RRSNSGTAYNQRT----------------LVKLGDIVEKG 734 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 D + + M + + A + + D + V V + + Sbjct: 735 DFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESE 793 Query: 952 KNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKST 1006 + + E +I + D DE I+ + +IL G+ G K Sbjct: 794 TRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEE 853 Query: 1007 VLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDM 1066 L + + R +V+ + + + KI GD++ Sbjct: 854 RLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------KIFTRANGDEL 896 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DGTPVDI+LNPLG Sbjct: 897 QSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLG 956 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 957 VPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWSTVKEAGM------------ 1004 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + ++L G TGEPFD Sbjct: 1005 -----------------------------DSDAKTIL------YDG-------RTGEPFD 1022 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1023 NRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1082 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 A+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q+LGL + + + Sbjct: 1083 ASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDE 1142 Query: 1367 RTKNSAKMEEIPDFNK 1382 + + Sbjct: 1143 DNNEVELRDLDEGEDD 1158 >gi|21909611|ref|NP_663879.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes MGAS315] gi|28894988|ref|NP_801338.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes SSI-1] gi|50913477|ref|YP_059449.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes MGAS10394] gi|56808832|ref|ZP_00366545.1| COG0085: DNA-directed RNA polymerase, beta subunit/140 kD subunit [Streptococcus pyogenes M49 591] gi|71902747|ref|YP_279550.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes MGAS6180] gi|94991583|ref|YP_599682.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes MGAS2096] gi|94993486|ref|YP_601584.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes MGAS10750] gi|139472961|ref|YP_001127676.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes str. Manfredo] gi|209558663|ref|YP_002285135.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes NZ131] gi|306828222|ref|ZP_07461483.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes ATCC 10782] gi|41018064|sp|Q8K8W3|RPOB_STRP3 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|73917874|sp|Q5XE97|RPOB_STRP6 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|88909643|sp|Q48VR1|RPOB_STRPM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158512770|sp|A2RC51|RPOB_STRPG RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158564171|sp|Q1J8X1|RPOB_STRPF RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158564180|sp|Q1JE20|RPOB_STRPB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|226699454|sp|B5XJ72|RPOB_STRPZ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|21903792|gb|AAM78682.1| putative DNA-dependent RNA polymerase subunit beta [Streptococcus pyogenes MGAS315] gi|28810233|dbj|BAC63171.1| putative DNA-dependent RNA polymerase subunit beta [Streptococcus pyogenes SSI-1] gi|50902551|gb|AAT86266.1| DNA-directed RNA polymerase beta chain [Streptococcus pyogenes MGAS10394] gi|71801842|gb|AAX71195.1| DNA-directed RNA polymerase beta chain [Streptococcus pyogenes MGAS6180] gi|94545091|gb|ABF35138.1| DNA-directed RNA polymerase beta chain [Streptococcus pyogenes MGAS2096] gi|94546994|gb|ABF37040.1| DNA-directed RNA polymerase beta chain [Streptococcus pyogenes MGAS10750] gi|134271207|emb|CAM29423.1| DNA-directed RNA polymerase beta chain [Streptococcus pyogenes str. Manfredo] gi|209539864|gb|ACI60440.1| DNA-directed RNA polymerase beta subunit [Streptococcus pyogenes NZ131] gi|304429600|gb|EFM32648.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes ATCC 10782] Length = 1188 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 427/963 (44%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DSGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGESDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG + +E I D+ Sbjct: 278 YKVNKKLNIKTRLLNQIIAENLVDAETGEILVEAGTEMTRSVIESIEEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVSPIDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D D + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNDVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV +VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGRVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFSASVVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ IR +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEIRRQDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 178/590 (30%), Positives = 255/590 (43%), Gaps = 80/590 (13%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTSIHIEEFEVMARDTKLGP 858 ++ P+ G E S V + + E + + G Sbjct: 643 MGANMQRQAVPLIDPKAPYVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEIRRQDGS 702 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 ++ ++ ++ VG V GD + + M + + A Sbjct: 703 LDVYHITKFRRSNSGTAYNQRTLVKVGDIVEKGDFIADGPS-MENGEMALGQNPVVAYMT 761 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQI----ELLARDKD 972 + + D + V V + + + E +I E +D Sbjct: 762 WEGYNFEDAVIMSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDL- 820 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 DE I+ + +IL G+ G K L + + R +V+ Sbjct: 821 DEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSR-----------EVR 869 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + + KI GD++ GV +V+V++A KR I+ GDKMAG Sbjct: 870 DTSLRVPHGGDGIVRDV------KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAG 923 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG+VSRI+P EDMP+L DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I Sbjct: 924 RHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHI 983 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D ++ D+ T ++D Sbjct: 984 ATPVFDGASSEDLWDTVREAGMDSDAK----------------------------TVLYD 1015 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G TGEPFD V+VG +YM+KL+HMV DK++ARS Sbjct: 1016 G--------------------------RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSV 1049 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I Sbjct: 1050 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAI 1109 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 G + G PESF VLVKE+Q+LGL + + + + + Sbjct: 1110 TKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|323126355|gb|ADX23652.1| DNA-directed RNA polymerase subunit beta [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1188 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 426/963 (44%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DSGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGESDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG + +E I D+ Sbjct: 278 YKVNKKLNIKTRLLNQIIAENLVDAETGEILVEAGTEMTRSVIESIEEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVSPIDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D D + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNDVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV +VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGRVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFSASVVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PFVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR++PNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREVPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 177/590 (30%), Positives = 253/590 (42%), Gaps = 80/590 (13%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTSIHIEEFEVMARDTKLGP 858 ++ P+ G E S V + + E + + G Sbjct: 643 MGANMQRQAVPLINPKAPFVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEVRREDGS 702 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 ++ ++ ++ VG V GD + + M + + A Sbjct: 703 LDVYHITKFRRSNSGTAYNQRTLVKVGDIVEKGDFIADGPS-MENGEMALGQNPVVAYMT 761 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER------EQIELLARDKD 972 + + D + V V + + + E E +D Sbjct: 762 WEGYNFEDAVIMSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREVPNVGEEALKDL- 820 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 DE I+ + +IL G+ G K L + + R +V+ Sbjct: 821 DEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSR-----------EVR 869 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + + KI GD++ GV +V+V++A KR I+ GDKMAG Sbjct: 870 DTSLRVPHGGDGIVRDV------KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAG 923 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG+VSRI+P EDMP+L DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I Sbjct: 924 RHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHI 983 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D ++ D+ T ++D Sbjct: 984 ATPVFDGASSEDLWDTVREAGMDSDAK----------------------------TVLYD 1015 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G TGEPFD V+VG +YM+KL+HMV DK++ARS Sbjct: 1016 G--------------------------RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSV 1049 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I Sbjct: 1050 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAI 1109 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 G + G PESF VLVKE+Q+LGL + + + + + Sbjct: 1110 TKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|270293428|ref|ZP_06199637.1| DNA-directed RNA polymerase, beta subunit [Streptococcus sp. M143] gi|270278277|gb|EFA24125.1| DNA-directed RNA polymerase, beta subunit [Streptococcus sp. M143] Length = 1203 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 423/963 (43%), Positives = 584/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ +E I Sbjct: 278 YKINKKLNIKTRLLNQTIAEPLVDPETGEILVEAGTVMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVLTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRVVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPAEVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYGGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDLVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LKN+DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKNLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 175/507 (34%), Positives = 245/507 (48%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDLVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKNLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLW--------- 997 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D E A +D ++I Sbjct: 998 ------------------------------------DTVKE---------AGMDSDAKTI 1012 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1013 LYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR R YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLRAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|325261309|ref|ZP_08128047.1| DNA-directed RNA polymerase, beta subunit [Clostridium sp. D5] gi|324032763|gb|EGB94040.1| DNA-directed RNA polymerase, beta subunit [Clostridium sp. D5] Length = 1291 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 437/953 (45%), Positives = 593/953 (62%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++++P+LIEVQK SY FL +EG++ F + PI+ FSG Sbjct: 19 KSSRMSYSRQKEVLEMPNLIEVQKDSYQWFL----------DEGMKEVFADISPISDFSG 68 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFV + D K+ +++C RD TYA PLK+ +RL D D +I E Sbjct: 69 HLSLEFVDFTLCEDDVKYTIEECKERDATYAAPLKVRVRLYNKDND---------EINEH 119 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMTK GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 120 EIFMGDLPLMTKTGTFVINGAERVIVSQLVRSPGIYYGIAHDKL---GKELYSATVIPNR 176 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG+ + EI+ F KI+ S D Sbjct: 177 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGIGTNAEIIDLFGEEPKILASFGKDTA 236 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S + L K + K K L + + + Sbjct: 237 ENYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDSRRYDLAKVGRYKFNKKLAL-KNRI 295 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G VAED+V+ TGEI E G VI + I ++ +P L+V+ + RN + Sbjct: 296 KGQRVAEDVVSPLTGEIVAEKGTVISRDLADTIQNA---AVPYLWVEGEEES---RNIKI 349 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 A++DI D V E ++ + + + +K +R +L Sbjct: 350 LSNMMVDLQAVVDI-------DPKEVGVTEQVYYPVLEGLLEETGGDIEELKDLIRRDLH 402 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G DDID+LGNRR+R+VGE+L+NQYR+GL R+E Sbjct: 403 -DLIPKHITKEDILASINYNIHLEYRMGNEDDIDHLGNRRIRAVGELLQNQYRIGLSRLE 461 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D + + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 462 RVVRERMTTQDQEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 521 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++AR+N YGFIE PYR Sbjct: 522 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLATYARINEYGFIEAPYR 581 Query: 604 KV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 K+ + VT +VVY++A EE+N ++AQAN LD++G F V R E R Sbjct: 582 KIDKENPENPIVTEEVVYMTADEEDNYHVAQANEPLDDEGHFIHRNVSGRYREETQEYER 641 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 K DF+D SPK V S+A +LIPFLENDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 642 SKFDFMDVSPKMVFSVATALIPFLENDDANRALMGSNMQRQAVPLLTTEAPVVGTGMEVK 701 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG IVA++AG++E+ + I I+ +G Y+L KF RSNQ+ C NQ Sbjct: 702 AAVDSGVCIVAEKAGVIERSTSTDITIKHDDGTK-------KTYKLTKFLRSNQSNCYNQ 754 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V G+ V +IADGPST G++ALG+N L+ FM W GYN+ED++L+SER+V +DV Sbjct: 755 RPIVDKGERVEEGQVIADGPSTSNGEMALGKNPLIGFMTWEGYNYEDAVLLSERLVQDDV 814 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRDIP V ++ LK++DE GII +GAEV GDILVGK+ Sbjct: 815 YTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDLDERGIIRIGAEVRAGDILVGKV 874 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G +VD ++F R D Sbjct: 875 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIIVDAKVFTRENGD 927 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 246/1066 (23%), Positives = 409/1066 (38%), Gaps = 79/1066 (7%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D I + D ++ ++ LL++Y+ +RPG+ AES+ +FFDS +YDL Sbjct: 218 IDLFGEEPKILASFGKDTAENYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDSRRYDL 277 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 + VGR K N +L L + + ++ + + +V + + D D + N V Sbjct: 278 AKVGRYKFNKKLALKNRIKGQRVAEDVVSPLTGEIVAEKGTVISRDLADTIQNAAV---- 333 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 + R+IK + + + V V L + Sbjct: 334 ----PYLWVEGEEESRNIKILSNMMVDLQAVVDIDPKEVGVTEQVYYPVLEGLLEETGGD 389 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVE-MRDVHPTHYGRICPAETSEGHNIGLVSSLT 587 + L + R L L + + ++H + R+ + + + ++ Sbjct: 390 IEELKDLI-RRDLHDLIPKHITKEDILASINYNIHLEY--RMGNEDDIDHLGNRRIRAVG 446 Query: 588 SFARVNAYGFIETPYRKVCDGKVTND-----------VVYLSAMEEENRYIAQANSSLDE 636 + + R V + T D + ++A +E +Q + +D+ Sbjct: 447 ELLQNQYRIGLSRLERVVRERMTTQDQEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQ 506 Query: 637 D---GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMG 693 + G T + + R + D + P N L Sbjct: 507 NNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLAT 566 Query: 694 CNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE---- 749 + + E+ + + A A + Sbjct: 567 YARINEYGFIEAPYRKIDKENPENPIVTEEVVYMTADEEDNYHVAQANEPLDDEGHFIHR 626 Query: 750 GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGR 809 Y KF + + + + + +D +++ A+ Sbjct: 627 NVSGRYREETQEYERSKFDFMDVSPKMVFSVATALIPFLENDDANRALMGSNMQRQAVPL 686 Query: 810 NMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVS 869 A + G + ++ +V+E I + G ++ + + Sbjct: 687 LTTEAPVVGTGMEVKAAVDSGVCIVAEKAGV-IERSTSTDITIKHDDGTKKTYKLTKFLR 745 Query: 870 EEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSL 929 ++ I+ G V G ++ + M + L + + D L Sbjct: 746 SNQSNCYNQRPIVDKGERVEEGQVIADGPSTSN-GEMALGKNPLIGFMTWEGYNYEDAVL 804 Query: 930 RVPSGVSGTVVDVRIFNRHGIDKNERSISVE--REQI--------ELLARDKDDEQVILD 979 V D + H + + + E+I + +D DE+ I+ Sbjct: 805 L----SERLVQDDVYTSVHIEEYEAEARDTKLGPEEITRDIPGVGDDALKDL-DERGIIR 859 Query: 980 RNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLK 1039 R +IL G+ G L + E R E Sbjct: 860 IGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRD 902 Query: 1040 VQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGI 1099 + K+ + GD++ PGV + V++++A KR I GDKMAGRHGNKG+ Sbjct: 903 TSLKVPHGEYGIIVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGV 962 Query: 1100 VSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY 1159 VSR+LP EDMP+L +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG I + + D Sbjct: 963 VSRVLPAEDMPYLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNISTPVFDG 1022 Query: 1160 KANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAI 1219 DI + ++ + + Sbjct: 1023 ANEIDIMDTLDLANDYVNLEWEEFVKKHGEELLPEVLEYLLAN--------------REH 1068 Query: 1220 NSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVT 1279 + + L G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARSTG YSLVT Sbjct: 1069 RKLWKGVPLTRDGKVRLRDGRTGEFFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVT 1128 Query: 1280 QQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTF 1339 QQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ G + Sbjct: 1129 QQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGENIP 1188 Query: 1340 ETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 E G PESF VL+KE+Q+L L + + ME + D+ + +L Sbjct: 1189 EPGIPESFKVLLKELQSLALDVRVLRDDNTEVEIMETV-DYGETDL 1233 >gi|312876381|ref|ZP_07736366.1| DNA-directed RNA polymerase, beta subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311796875|gb|EFR13219.1| DNA-directed RNA polymerase, beta subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 1230 Score = 833 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 431/959 (44%), Positives = 602/959 (62%), Gaps = 60/959 (6%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 V G R +GK E++D+P L+E+QK S+ FL +EGL+ K + PI Sbjct: 7 VQYG-KVQRMSYGKVKEVLDLPYLLEIQKKSFQWFL----------DEGLREVLKEISPI 55 Query: 66 TAFSGAAMLEFVSYEF-DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKD 124 +S +LEFV Y F PPK+ +C RD TYA PLK+ +RLI K + Sbjct: 56 KDYSETLLLEFVDYYFDGPPKYSEQECKERDATYARPLKVKVRLI---------NKETGE 106 Query: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRI 184 IKEQ IYMG+ P+MT+ GTF+I G +R++VSQL RSPG +F + G+ +++ + Sbjct: 107 IKEQDIYMGEFPIMTETGTFIINGAERVIVSQLIRSPGCYFASSIDKQ---GRKIFSGTL 163 Query: 185 IPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGD 243 IP++G W++ E D+ +++ VR+DR RKV +T+ L A G+ +++ I F + Sbjct: 164 IPNRGAWLEFETDASELLSVRLDRTRKVSLTTLLKAFGLYNQQLIFEKFGEDERLKASLE 223 Query: 244 FWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS-- 300 + + A + + GE +E+ + L + + + +G Sbjct: 224 KEANKGELGNPVENA-LLEVYRRLRPGEPPNVENARSLLYNMFFDPRRYDLAKVGRYKFN 282 Query: 301 ------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 + A+D+V+ TGEI ++ G+VI + I + I ++ + + Sbjct: 283 KKLSLWKRIFNKRAAQDVVDPMTGEILVKEGEVITREIALNIQDAGINEVWVYADEERPF 342 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 NT+ D+ + + L+I ++ + + D+S + R+ Sbjct: 343 KVVGNNTVKLDRYVEFDVSDLNIKELVYKPVLDDILKITN------------DVSEIKRL 390 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 + + +DI A + L+ G GT DDID+LGNRRVR+VGE+L+NQ Sbjct: 391 IKEK----ERELVPYCLTIDDIYAATSYFLGLKYGIGTTDDIDHLGNRRVRAVGELLQNQ 446 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +R+GL RMER I+ER++ DID+V PQ LIN +PV +A+ EFF SS LSQ + VN L+ Sbjct: 447 FRIGLARMERVIRERMNIHDIDTVTPQTLINIRPVTAAIKEFFGSSPLSQFMDQVNPLAA 506 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +T+ RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++ARVN Sbjct: 507 LTNKRRLSALGPGGLSRDRAGFEVRDVHHSHYGRMCPIETPEGPNIGLITSLATYARVNE 566 Query: 595 YGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGE 652 YGF+ETPYRKV + +VT++VVYL+A EE+ IAQA +D +G F + V R E Sbjct: 567 YGFLETPYRKVDKKEARVTDEVVYLTADEEDTYKIAQATEPVDVEGRFINQRVTVRFGEE 626 Query: 653 EILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVG 712 I V + ++D +D SPKQ+VS++ SLIPFLENDD+NR LMG NMQRQAVPLL EAP +G Sbjct: 627 IIEVDKHEVDLVDISPKQIVSVSTSLIPFLENDDANRALMGSNMQRQAVPLLTTEAPIIG 686 Query: 713 TGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 TG+E A SG I+AK+ G+VE+V A IVIR+ +G D +Y L+KF+R+NQ Sbjct: 687 TGVEYRAAVDSGVCILAKKDGVVEKVSADEIVIRNNDGTKD-------VYHLLKFKRTNQ 739 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 TC NQRP+V+ G EV+ ++IADGPSTD G+LALG+N+LVAFMPW GYN+ED++LISER Sbjct: 740 GTCFNQRPIVRKGQEVKAGEVIADGPSTDHGELALGKNVLVAFMPWEGYNYEDAILISER 799 Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V EDV+TSIHIEE+E ARDTKLGPEEITRDIPNV E+ +K++DE GII +GAEV GD Sbjct: 800 LVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGEDAIKDLDERGIIRIGAEVKSGD 859 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 ILVGK+TPKGE+ +T EE+LLRAIFGEKA + RDTSLRVP G G VVDV++F+R D Sbjct: 860 ILVGKVTPKGETELTAEERLLRAIFGEKARETRDTSLRVPHGEGGIVVDVKVFSRDKGD 918 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 165/538 (30%), Positives = 234/538 (43%), Gaps = 79/538 (14%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 G +++ + ++ I+ G EV G+++ + + + + Sbjct: 720 RNNDGTKDVYHLLKFKRTNQGTCFNQRPIVRKGQEVKAGEVIADGPST-DHGELALGKNV 778 Query: 913 LRAIFGEKAVDVRDTSLRVPS------GVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966 L A + + D L S + + R E E Sbjct: 779 LVAFMPWEGYNYEDAILISERLVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGED 838 Query: 967 LARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAV 1026 +D DE+ I+ + +IL G+ G L + E R Sbjct: 839 AIKDL-DERGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRAIFGEKAR-------- 889 Query: 1027 QDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQS 1086 E+ K+ GD++PPGV ++V+V+VA KR I Sbjct: 890 ---------ETRDTSLRVPHGEGGIVVDVKVFSRDKGDELPPGVNQLVRVYVAQKRKISV 940 Query: 1087 GDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACV 1146 GDKMAGRHGNK GV SR+ Sbjct: 941 GDKMAGRHGNK----------------------------GVISRI--------------- 957 Query: 1147 GLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPV 1206 ++ + ++ V+ +++ G V Sbjct: 958 ---LPVEDMPFLPDGTP--------VDIVLNPLGVPSRMNIGQILETHLGYAAKALGWKV 1006 Query: 1207 STPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDK 1266 +TPVFDGA EE I L++A L+ +G++ILYDG TGEPFD VTVGY+YMLKL H+V DK Sbjct: 1007 ATPVFDGAKEEDIEEALKLAGLNPTGKTILYDGRTGEPFDNEVTVGYMYMLKLVHLVDDK 1066 Query: 1267 VYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRT 1326 ++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW I+AYGAAY LQE+LT+KSDDV GR Sbjct: 1067 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAIEAYGAAYTLQELLTVKSDDVTGRV 1126 Query: 1327 RVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 + YE+IV G + E G PESF VLVKE+Q+L L + L + K E + + + + Sbjct: 1127 KTYEAIVKGENIPEPGIPESFKVLVKELQSLCLDVKLLSEDNKEIELKESVDEDEQPQ 1184 >gi|302023207|ref|ZP_07248418.1| DNA-directed RNA polymerase subunit beta [Streptococcus suis 05HAS68] Length = 1190 Score = 833 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 415/963 (43%), Positives = 586/963 (60%), Gaps = 81/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+L+E+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVQYGKHRTRRSFSRIKEVLDLPNLVEIQTDSFQDFL----------DYGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V P++ F+ LEFV YE PK+ +++ D Y+ P+ +T RL+ K Sbjct: 51 DVLPVSNFTDTMELEFVGYELKEPKYTLEEARAHDANYSAPIYVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ G+ P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGEFPIMTEMGTFIINGAERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD + + GE ES + L + + + +G Sbjct: 219 NTIEKDI-HKNPADSRTDEALKEIYERLRPGEPKTAESSRSLLTARFFDPRRYDLAPVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE ++NGETGEI +EAG V+ LE++ D Sbjct: 278 YKINKKLNLRTRLLNQTLAEHVINGETGEIVLEAGTVLSRDVLEKVEAQ---------FD 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + LL ++++ P D Sbjct: 329 ELNLVEYIPN----DNAVLLEPVLLQKFKIVAPKDP------------------------ 360 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + ++VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 361 --ERVVTVIGNANPAENVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 418 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ R+GL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 419 LANQVRIGLTRMERNLRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 478 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 479 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 538 Query: 591 RVNAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRK+ G VTN++V+L+A EE+ +AQ+ S LDE+ F +++V R Sbjct: 539 HLNKYGFIQTPYRKIDRATGTVTNEIVWLTADEEDAYIVAQSTSPLDENNRFVDKIVMGR 598 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P + DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 599 HQGNNQEFPADSADFMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 658 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAAI+A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 659 PYVGTGMEYQAAHDSGAAIIAQHDGKVVYADADKVEVRREDGSLD-------VYHISKFR 711 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVK+GD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 712 RSNSGTAYNQRTLVKLGDIVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 771 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ L+N+DE GII +GAEV Sbjct: 772 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEV 831 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 832 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 891 Query: 949 GID 951 D Sbjct: 892 NGD 894 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 251/1096 (22%), Positives = 392/1096 (35%), Gaps = 177/1096 (16%) Query: 332 SLEEIFHSEIRDIPILYVD-SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFS 390 + + S +I ++ D + N ++ + +AL +IY +RPG+ T Sbjct: 195 LVRALGFSGDDEIFDIFGDSELVRNTIEKDIHKNPADSRTDEALKEIYERLRPGEPKTAE 254 Query: 391 VAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIA------------ 438 + S+ FFD +YDL+ VGR K+N +LNL T + + + I Sbjct: 255 SSRSLLTARFFDPRRYDLAPVGRYKINKKLNLRTRLLNQTLAEHVINGETGEIVLEAGTV 314 Query: 439 -IIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG----LLRMERSIKERISSV 493 +L + ++ ++ + N + +L ++++ R+ I + Sbjct: 315 LSRDVLEKVEAQFDELNLVEYIPNDNAVLLEPVLLQKFKIVAPKDPERVVTVIGNANPAE 374 Query: 494 DIDSVMPQD----LINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGV 549 ++ +V P D + + + L R + + Sbjct: 375 NVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRIGLTRMERNL 434 Query: 550 ARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRK----- 604 + + + P I P + G + N + R Sbjct: 435 RERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGP 494 Query: 605 -----------VCDGKVTNDVVYLSAMEEENRYIAQAN--SSLDEDGSFTEELVFCRCAG 651 V D T+ E I N SS + R Sbjct: 495 GGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFIQTPYRKID 554 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 +I ++ A + +A S P EN+ R + M R Sbjct: 555 RATGTVTNEIVWLTADEEDAYIVAQSTSPLDENN---RFVDKIVMGR------------- 598 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 G S + +V A + + + + + + Sbjct: 599 HQGNNQEFPADSADFMDVSPKQVVAVATACIPFLENDDSNRALMGANM------------ 646 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 QR V D A T + A + G E Sbjct: 647 ------QR------QAVPLIDPKAPYVGTGMEYQAAHDSGAAIIAQHDGKVVYADADKVE 694 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 + HI +F R + G R ++ +G V G Sbjct: 695 VRREDGSLDVYHISKF----RRSNSGTAYNQRT----------------LVKLGDIVEKG 734 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 D + + M + + A + + D + V V + + Sbjct: 735 DFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESE 793 Query: 952 KNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKST 1006 + + E +I + D DE I+ + +IL G+ G K Sbjct: 794 TRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEE 853 Query: 1007 VLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDM 1066 L + + R +V+ + + + KI GD++ Sbjct: 854 RLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------KIFTRANGDEL 896 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 GV V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DGTPVDI+LNPLG Sbjct: 897 QSGVNMFVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLG 956 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 957 VPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWSTVKEAGM------------ 1004 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 + ++L G TGEPFD Sbjct: 1005 -----------------------------DSDAKTIL------YDG-------RTGEPFD 1022 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1023 NRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1082 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 A+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+Q+LGL + + + Sbjct: 1083 ASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDE 1142 Query: 1367 RTKNSAKMEEIPDFNK 1382 + + Sbjct: 1143 DNNEVELRDLDEGEDD 1158 >gi|251781562|ref|YP_002995863.1| DNA-directed RNA polymerase subunit beta [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390190|dbj|BAH80649.1| DNA-directed RNA polymerase beta subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1188 Score = 833 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 425/963 (44%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DSGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGESDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG + +E I D+ Sbjct: 278 YKVNKKLNIKTRLLNQIIAENLVDAETGEILVEAGTEMTRSVIESIEEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVSPIDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D D + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNDVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV +VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGRVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFSASVVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR++PNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREVPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 177/590 (30%), Positives = 253/590 (42%), Gaps = 80/590 (13%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTSIHIEEFEVMARDTKLGP 858 ++ P+ G E S V + + E + + G Sbjct: 643 MGANMQRQAVPLIDPKAPYVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEVRREDGS 702 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 ++ ++ ++ VG V GD + + M + + A Sbjct: 703 LDVYHITKFRRSNSGTAYNQRTLVKVGDIVEKGDFIADGPS-MENGEMALGQNPVVAYMT 761 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER------EQIELLARDKD 972 + + D + V V + + + E E +D Sbjct: 762 WEGYNFEDAVIMSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREVPNVGEEALKDL- 820 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 DE I+ + +IL G+ G K L + + R +V+ Sbjct: 821 DEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSR-----------EVR 869 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + + KI GD++ GV +V+V++A KR I+ GDKMAG Sbjct: 870 DTSLRVPHGGDGIVRDV------KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAG 923 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG+VSRI+P EDMP+L DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I Sbjct: 924 RHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHI 983 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D ++ D+ T ++D Sbjct: 984 ATPVFDGASSEDLWDTVREAGMDSDAK----------------------------TVLYD 1015 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G TGEPFD V+VG +YM+KL+HMV DK++ARS Sbjct: 1016 G--------------------------RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSV 1049 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I Sbjct: 1050 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAI 1109 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 G + G PESF VLVKE+Q+LGL + + + + + Sbjct: 1110 TKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|160881805|ref|YP_001560773.1| DNA-directed RNA polymerase, beta subunit [Clostridium phytofermentans ISDg] gi|160430471|gb|ABX44034.1| DNA-directed RNA polymerase, beta subunit [Clostridium phytofermentans ISDg] Length = 1278 Score = 833 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 434/953 (45%), Positives = 590/953 (61%), Gaps = 57/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 VR + K E++++P+LIEVQK SY FL EGL F + PI +S Sbjct: 13 KGVRMSYSKQKEVLEMPNLIEVQKDSYQWFL----------EEGLNEVFDDISPIEDYSD 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LEFVS++ D K+ +++C RD TYA PLK+ +RL K ++I E Sbjct: 63 HLSLEFVSFQLCEDDVKYSIEECKERDATYAAPLKVKVRL---------RNKETEEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++ + GK L++ +IP++ Sbjct: 114 DIFMGDLPLMTETGTFVINGAERVIVSQLVRSPGIYYAIQHDKV---GKTLHSSTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T L A+G+ S EI+ F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRNRKVPITVLLRAMGIGSNAEIVEMFGEEPKILASFSKDPS 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +++ E +I S L K + K K L + + + Sbjct: 231 DNYQDGLLELYKKLRPGEPLSVESAESLINSMFFDPRRYDLAKVGRFKFNKKLAL-KNRV 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED+V+ ETGEI EAG +I E I + ++ I L N + N +V Sbjct: 290 LGFPLAEDVVDTETGEILAEAGTIITEALAIRIQNRAVKSI--LVQAEERNVVVLSNMMV 347 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 + D + + + + + + + D + + Sbjct: 348 DFEEYATLDCDKE---ELGITEEVYYPALRMILDSCSSQEEIKD-------AVAKHITDL 397 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 P +HI K+DI A I + L G G DDID+LGNRR+R+VGE+L+NQYR+GL RME Sbjct: 398 IP---KHITKDDIYASINYNMHLEYGIGNEDDIDHLGNRRIRAVGELLQNQYRIGLSRME 454 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D++ + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 455 RVVRERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 514 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL S+AR+N YGFIE PYR Sbjct: 515 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLASYARINQYGFIEAPYR 574 Query: 604 KV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 KV + +VT +VVYL+A EE+ +AQAN LDE G F + V R E + Sbjct: 575 KVDRTDPENPRVTEEVVYLTADEEDKYVVAQANEPLDETGYFVNQSVSGRYREETSSYQK 634 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 K+D +D SPK V S+A ++IPFL+NDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 635 RKVDLMDVSPKMVFSVATAMIPFLQNDDANRALMGSNMQRQAVPLLFTEAPVVGTGMELK 694 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG +V+K+AG VE+ + ++I++ +G YRL+KF RSNQ TC+NQ Sbjct: 695 TAVDSGVCVVSKKAGTVEKSTSREVIIKNDDGTKSS-------YRLVKFARSNQGTCINQ 747 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V GD+V ++IADGPST G+LALG++ L+ FM W GYN+ED++L+SER+V EDV Sbjct: 748 RPIVVKGDKVEAGEVIADGPSTANGELALGKSPLIGFMTWEGYNYEDAVLLSERLVQEDV 807 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TS+HIEE+E ARDTKLGPEEITRD+P V ++ LK++DE GII +GAEV GDILVGK+ Sbjct: 808 YTSVHIEEYEAEARDTKLGPEEITRDVPGVGDDALKDLDERGIIRIGAEVRAGDILVGKV 867 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSLRVP G G +VD ++F R D Sbjct: 868 TPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEYGIIVDAKVFTRENGD 920 Score = 550 bits (1416), Expect = e-153, Method: Composition-based stats. Identities = 258/1176 (21%), Positives = 422/1176 (35%), Gaps = 73/1176 (6%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + + I+ E+VI S + G+ +++ V Sbjct: 99 KVRLRNKETEEINEHDIFMGDLPLMTETGTFVINGAERVIVSQLVRSPGIYYAIQHDKVG 158 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 +S + A ++ +++ D + + + + V+ Sbjct: 159 KTLHSSTVIPNRG-AWLEYETDSNDVFYVRVDRNRKVPITVLLRAMGIGSNAEIVEMFGE 217 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 I + D + + +D LL++Y+ +RPG+ + AES+ N +FFD +YDL+ VGR Sbjct: 218 EPKILASFSKDPSDNYQDGLLELYKKLRPGEPLSVESAESLINSMFFDPRRYDLAKVGRF 277 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 K N +L L R + ++ + + L R + + Q Sbjct: 278 KFNKKLAL----KNRVLGFPLAEDVVDTETGEILAEAGTIITEALAIRIQNRAVKSILVQ 333 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 + + VD + D + + E L + + +S Sbjct: 334 AEERNV-----VVLSNMMVDFEEYATLDCDKEEL---GITEEVYYPALRMILDSCSSQEE 385 Query: 535 ITHT--RRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARV 592 I + ++ L + + + YG + N + ++ + Sbjct: 386 IKDAVAKHITDLIPKHITKDDIYASINYNMHLEYGIGNEDDIDHLGN-RRIRAVGELLQN 444 Query: 593 NAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSS----------LDEDGSFTE 642 + R V + T D+ +S N A + + Sbjct: 445 QYRIGLSRMERVVRERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLG 504 Query: 643 ELVFCRCAGEEIL----VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQR 698 EL R R + D + P N L Sbjct: 505 ELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLASYARIN 564 Query: 699 QAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSG 758 Q + T E+ + A A + + + Sbjct: 565 QYGFIEAPYRKVDRTDPENPRVTEEVVYLTADEEDKYVVAQANEPLDETGYFVNQSVSGR 624 Query: 759 VDIYRLMKFQRSNQNTCVNQRPL--VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFM 816 +R V+ + + V + A+ +L Sbjct: 625 YREETSSYQKRKVDLMDVSPKMVFSVATAMIPFLQNDDANRALMGSNMQRQAVPLLFTEA 684 Query: 817 PWHGYNFEDSMLISER-MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKN 875 P G E + V ++ + G + R + Sbjct: 685 PVVGTGMELKTAVDSGVCVVSKKAGTVEKSTSREVIIKNDDGTKSSYRLVKFARSNQGTC 744 Query: 876 IDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGV 935 I++ I+ G +V G+++ + + + L + + D L V Sbjct: 745 INQRPIVVKGDKVEAGEVIADGPSTAN-GELALGKSPLIGFMTWEGYNYEDAVLLSERLV 803 Query: 936 SGTVVDVRIFNRHGIDKNERSISVEREQIE------LLARDKDDEQVILDRNIYSRLMEI 989 V + + + + E + +D DE+ I+ R +I Sbjct: 804 QEDVYTSVHIEEYEAEARDTKLGPEEITRDVPGVGDDALKDL-DERGIIRIGAEVRAGDI 862 Query: 990 LCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSIL 1049 L G+ G L + E R E Sbjct: 863 LVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRDTSLRVPHGEY 905 Query: 1050 EDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDM 1109 K+ + GD++ PGV + V+V++A KR IQ GDKMAGRHGNKG+VSR+LP EDM Sbjct: 906 GIIVDAKVFTRENGDELSPGVNQTVRVYIAQKRKIQVGDKMAGRHGNKGVVSRVLPAEDM 965 Query: 1110 PFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLR 1169 PFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG + + + D DI Sbjct: 966 PFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLASRVLGFNVSTPVFDGANEYDIMDTL 1025 Query: 1170 SFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLD 1229 + + D + E ++ Sbjct: 1026 ELANDYVNAPLDKFEAKYKDILDPEVMDYL--------------VSNEDYRKQWEGVPIN 1071 Query: 1230 ESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNR 1289 G+ L DG TGE FD VTVG+++ LKL+H+V DK++ARSTG YSLVTQQPLGGK+ Sbjct: 1072 RDGKVRLRDGRTGEYFDSAVTVGFMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQF 1131 Query: 1290 GGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNV 1349 GGQR GEMEVW ++AYGAA++LQE+LT+KSDDV GR + YE+I+ G++ E G PESF V Sbjct: 1132 GGQRFGEMEVWALEAYGAAHILQEILTVKSDDVTGRVKTYEAIIKGDNISEPGIPESFKV 1191 Query: 1350 LVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCEL 1385 L+KE+Q+L L + + + E I D+ + E Sbjct: 1192 LLKELQSLALDVTVLDENGDEVKMTENI-DYGETEF 1226 >gi|15674321|ref|NP_268495.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes M1 GAS] gi|71909897|ref|YP_281447.1| DNA-directed RNA polymerase subunit beta [Streptococcus pyogenes MGAS5005] gi|41018125|sp|Q9A1U1|RPOB_STRP1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|13621404|gb|AAK33216.1| putative DNA-dependent RNA polymerase subunit beta [Streptococcus pyogenes M1 GAS] gi|71852679|gb|AAZ50702.1| DNA-directed RNA polymerase beta chain [Streptococcus pyogenes MGAS5005] Length = 1188 Score = 833 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 427/963 (44%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DSGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGESDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG + +E I D+ Sbjct: 278 YKVNKKLNIKTRLLNQIIAENLVDAETGEILVEAGTEMTRSVIESIEEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVVSPIDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D D + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNDVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGTVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFSASVVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A++ G V DA ++ IR +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQQNGKVVFSDAEKVEIRRQDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 178/590 (30%), Positives = 255/590 (43%), Gaps = 80/590 (13%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTSIHIEEFEVMARDTKLGP 858 ++ P+ G E S V + + E + + G Sbjct: 643 MGANMQRQAVPLIDPKAPYVGTGMEYQAAHDSGAAVIAQQNGKVVFSDAEKVEIRRQDGS 702 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 ++ ++ ++ VG V GD + + M + + A Sbjct: 703 LDVYHITKFRRSNSGTAYNQRTLVKVGDIVEKGDFIADGPS-MENGEMALGQNPVVAYMT 761 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQI----ELLARDKD 972 + + D + V V + + + E +I E +D Sbjct: 762 WEGYNFEDAVIMSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDL- 820 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 DE I+ + +IL G+ G K L + + R +V+ Sbjct: 821 DEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSR-----------EVR 869 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + + KI GD++ GV +V+V++A KR I+ GDKMAG Sbjct: 870 DTSLRVPHGGDGIVRDV------KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAG 923 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG+VSRI+P EDMP+L DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I Sbjct: 924 RHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHI 983 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D ++ D+ T ++D Sbjct: 984 ATPVFDGASSEDLWDTVREAGMDSDAK----------------------------TVLYD 1015 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G TGEPFD V+VG +YM+KL+HMV DK++ARS Sbjct: 1016 G--------------------------RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSV 1049 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I Sbjct: 1050 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAI 1109 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 G + G PESF VLVKE+Q+LGL + + + + + Sbjct: 1110 TKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|306825906|ref|ZP_07459245.1| DNA-directed RNA polymerase subunit beta [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432267|gb|EFM35244.1| DNA-directed RNA polymerase subunit beta [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1223 Score = 833 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 422/963 (43%), Positives = 585/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 21 LAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 70 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 71 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 121 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 122 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 178 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 179 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 238 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 239 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 297 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ +E I D+ Sbjct: 298 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTVMTRSVIESIESYLDGDL------ 351 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N YI N D + +L ++V+ P D Sbjct: 352 --NKIVYIPN----DAAVLTEPVVLQKFKVVAPMDPDRV--------------------- 384 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 385 -----VTIIGNANPDDKVRVVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 439 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 440 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 499 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 500 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 559 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 560 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGR 619 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 620 HQGVNQEYPAEVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 679 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 680 PYVGTGMEYQAAHDSGAAVIAQHDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 732 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 733 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 792 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LKN+DE GII +GAEV Sbjct: 793 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKNLDEMGIIRIGAEV 852 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 853 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 912 Query: 949 GID 951 D Sbjct: 913 NGD 915 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 175/507 (34%), Positives = 245/507 (48%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 745 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 803 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 804 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKNLDEMGIIRIGAEVKEGDILVGKVT 863 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 864 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 906 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 907 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 966 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 967 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLW--------- 1017 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D E A +D ++I Sbjct: 1018 ------------------------------------DTVKE---------AGMDSDAKTI 1032 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1033 LYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1092 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR R YE+I G + G PESF VLVKE+Q Sbjct: 1093 EMEVWALEAYGASNVLQEILTYKSDDINGRLRAYEAITKGKPIPKPGVPESFRVLVKELQ 1152 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1153 SLGLDMRVLDEDDQEVELRDLDEGMDE 1179 >gi|307709965|ref|ZP_07646412.1| DNA-directed RNA polymerase, beta subunit [Streptococcus mitis SK564] gi|307619336|gb|EFN98465.1| DNA-directed RNA polymerase, beta subunit [Streptococcus mitis SK564] Length = 1203 Score = 833 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 584/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I D+ Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIESIESYLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N YI N D + +L ++V+ P D Sbjct: 332 --NKIVYIPN----DAAVVTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRIVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1226), Expect = e-131, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|293375382|ref|ZP_06621663.1| DNA-directed RNA polymerase, beta subunit [Turicibacter sanguinis PC909] gi|325844451|ref|ZP_08168178.1| DNA-directed RNA polymerase, beta subunit [Turicibacter sp. HGF1] gi|292645935|gb|EFF63964.1| DNA-directed RNA polymerase, beta subunit [Turicibacter sanguinis PC909] gi|325489125|gb|EGC91509.1| DNA-directed RNA polymerase, beta subunit [Turicibacter sp. HGF1] Length = 1177 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 427/966 (44%), Positives = 595/966 (61%), Gaps = 78/966 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA +V G R R+ + + +++P+LIE+Q ASY FL ++G++ FK Sbjct: 1 MAGKIVQYGKKRQRRNYSRINVALELPNLIEIQTASYQWFL----------DQGIREMFK 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI +G LEFV Y PK+ V + RD YA PL++ +RL + D + + Sbjct: 51 DISPIEDNNGNLALEFVDYNLGEPKYTVLEAKERDANYAAPLRVKVRLHIKDEE----TQ 106 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK++KE +YMGD PLMT GTFVI G +R++VSQL RS G++++ + + SGK Y Sbjct: 107 AIKEVKESEVYMGDFPLMTPTGTFVINGSERVIVSQLVRSSGVYYNKETDKK--SGKEKY 164 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDS-EEILSTFYPK--IV 237 A ++IP++G W++ E D+KDI++VR+DR RK+P+T L ALG+ + E+I+ F I+ Sbjct: 165 AAQVIPNRGAWLEYELDAKDIVYVRVDRTRKIPITVLLRALGLSTKEQIIEMFGENAYIL 224 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKF 295 + D A + ID + S L + K K Sbjct: 225 NTLEKDQTVNSDEALMEIFQKLRQGEHATIDGARTLFVSRFFDPKRYDLAHVGRYKFNKK 284 Query: 296 LGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN 355 L + L +A DI + ETGE+ +E G VI + E++ +I + I V+ VN Sbjct: 285 LS-AQERLLNQKLASDIFDSETGEVLVEEGTVITRRIFEDVLADKIDRLNIKKVELVN-- 341 Query: 356 AYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVK 415 + ++ ++ + RV V Sbjct: 342 ------PLEERETYVQEFEVYSPRVNEGDQVV---------------------------- 367 Query: 416 MNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQY 475 R+ + D+ +HI DI A I +L + G +DDID+LGNRR+R VGE+L+NQ+ Sbjct: 368 ---RIIGNVEDECKHITTSDIFASISYFFNLLDSVGYLDDIDHLGNRRLRLVGELLQNQF 424 Query: 476 RLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRI 535 R+GL RMER +KER+S + + + P LIN +PV +A+ EFF SSQLSQ + N LS + Sbjct: 425 RIGLSRMERVVKERMSIQETEGITPSSLINIRPVTAAIKEFFGSSQLSQFMDQTNPLSEL 484 Query: 536 THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 TH RRLSALG GG+ R RAG+E+RDVH +HYGR+CP ET EG NIGL++SL+S+A+VN + Sbjct: 485 THKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNKF 544 Query: 596 GFIETPYRKVC----------DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELV 645 GFIETPYRKV VT+++ YL+A EE+ +AQA LDE G+ E V Sbjct: 545 GFIETPYRKVVPVIDEETKQPKMHVTDEIRYLTADEEDRYVVAQAGLDLDEKGN-LPEKV 603 Query: 646 FCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLK 705 R GE ++VP E++DF+D SPKQ+VS+A + IPFLE+DD+NR LMG NMQRQA+PLL Sbjct: 604 IVRHRGENLIVPAERVDFVDVSPKQIVSVATACIPFLEHDDANRALMGANMQRQAIPLLI 663 Query: 706 AEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLM 765 EAPFVGTGME V AK SG A+VA +G VE VD+ I +R + +D Y L+ Sbjct: 664 PEAPFVGTGMEYVAAKDSGQAVVAYNSGTVEYVDSKVIKLRRD------ADGQIDKYPLI 717 Query: 766 KFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFED 825 KF RSN +T +NQRP+VK+GD + +++AD S + G+LALGRN++VAFM W+GYN+ED Sbjct: 718 KFVRSNSSTVLNQRPIVKLGDHINAGEVLADSSSMESGELALGRNVVVAFMTWNGYNYED 777 Query: 826 SMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVG 885 ++++SER+V +DV+TSIHIEE+E+ ARDTKLGPEEITRDIP V E+ LKN+D+ GII +G Sbjct: 778 AIIMSERLVKDDVYTSIHIEEYELEARDTKLGPEEITRDIPGVGEDALKNLDDRGIIRIG 837 Query: 886 AEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIF 945 AEV DILVGK+T KG++ +T EE+LL AIFGEKA +VRDTSLRVP G G V DV+ F Sbjct: 838 AEVKEDDILVGKVTAKGQTELTAEERLLHAIFGEKAREVRDTSLRVPHGGDGIVHDVKYF 897 Query: 946 NRHGID 951 +R D Sbjct: 898 SRRNGD 903 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 238/1083 (21%), Positives = 421/1083 (38%), Gaps = 126/1083 (11%) Query: 316 ETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALL 375 + +I D + + + + ++ NAYI NTL D+ + +AL+ Sbjct: 181 DAKDIVYVRVDRTRKIPITVLLRALGLSTKEQIIEMFGENAYILNTLEKDQTVNSDEALM 240 Query: 376 DIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDT----------- 424 +I++ +R G+ +T A ++F FFD +YDL+ VGR K N +L+ Sbjct: 241 EIFQKLRQGEHATIDGARTLFVSRFFDPKRYDLAHVGRYKFNKKLSAQERLLNQKLASDI 300 Query: 425 --PDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRM 482 + + +E + +I D+ K +I + E ++ + R+ Sbjct: 301 FDSETGEVLVEEGTVITRRIFEDVLADKIDRLNIKKVELVNPLEERETYVQEFEVYSPRV 360 Query: 483 ERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLS 542 + +++ I + +++ FF + V L I H Sbjct: 361 NEGDQVVRIIGNVEDE--CKHITTSDIFASISYFFNL------LDSVGYLDDIDHLGNRR 412 Query: 543 ALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPY 602 G + + + + + + R+ ET L++ A + + Sbjct: 413 LRLVGELLQNQFRIGLSRMERVVKERMSIQETEGITPSSLINIRPVTAAIKEFFGSSQLS 472 Query: 603 RKVCDGKVTNDVVY---LSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV--P 657 + + +++ + LSA+ +A + + + E + Sbjct: 473 QFMDQTNPLSELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLI 532 Query: 658 REKIDFIDASPKQVV-SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 + + + + ++P ++ + + + R + G++ Sbjct: 533 NSLSSYAKVNKFGFIETPYRKVVPVIDEETKQPKMHVTDEIRYLTADEEDRYVVAQAGLD 592 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 + ++ + G V A R+ V S + I Sbjct: 593 LDEKGNLPEKVIVRHRGENLIVPAERVDFVDVSPKQIVSVATACI--------------- 637 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 + +D ++ A+ + A G + + + +V+ Sbjct: 638 ---------PFLEHDDANRALMGANMQRQAIPLLIPEAPFVGTGMEYVAAKDSGQAVVAY 688 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 + T +++ + R G + I V +++ I+ +G +N G++L Sbjct: 689 NSGTVEYVDSKVIKLRRDADGQIDKYPLIKFVRSNSSTVLNQRPIVKLGDHINAGEVLAD 748 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 + + ++ A + D + + K++ Sbjct: 749 SSS-MESGELALGRNVVVAFMTWNGYNYEDAIIMS----------------ERLVKDDVY 791 Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKG---FKKSTVLSSDLI 1013 S+ E+ EL ARD + R+I + L + + K+ +L + Sbjct: 792 TSIHIEEYELEARDTKLGPEEITRDIPGVGEDALKNLDDRGIIRIGAEVKEDDILVGKVT 851 Query: 1014 SEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR-FKNKIEKIQWGDDMPPGVLR 1072 ++ + + ++ + K + GDD+ PGV Sbjct: 852 AKGQTELTAEERLLHAIFGEKAREVRDTSLRVPHGGDGIVHDVKYFSRRNGDDLSPGVNE 911 Query: 1073 VVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMN 1132 V+++++ KR I GDKMAGRHGNKG++S+ILP EDMP++ DGTPVDI+LNPLGVPSRMN Sbjct: 912 VIRIYIVQKRKISEGDKMAGRHGNKGVISKILPQEDMPYMPDGTPVDIMLNPLGVPSRMN 971 Query: 1133 VGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDS 1192 +GQI E HLG A LG + + + D D+ + + Sbjct: 972 IGQILEIHLGMAAKKLGIHVATPVFDGVKTEDLEAIIAEAGMDKDAK------------- 1018 Query: 1193 VLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVG 1252 T ++DG TGE FD ++VG Sbjct: 1019 ---------------TVLYDG--------------------------RTGEKFDNRISVG 1037 Query: 1253 YIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQ 1312 +YM+KL HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQ Sbjct: 1038 VMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1097 Query: 1313 EMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSA 1372 E+LT+KSDD+ GR + YE+IV G + E G PESF VLVKE+Q+LGL + + ++ Sbjct: 1098 EILTVKSDDITGRVKTYEAIVRGENVPEPGIPESFRVLVKELQSLGLDVKILSNEKDEIE 1157 Query: 1373 KME 1375 + Sbjct: 1158 IRD 1160 >gi|153852611|ref|ZP_01994048.1| hypothetical protein DORLON_00021 [Dorea longicatena DSM 13814] gi|149754253|gb|EDM64184.1| hypothetical protein DORLON_00021 [Dorea longicatena DSM 13814] Length = 1292 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 432/953 (45%), Positives = 585/953 (61%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++ +P+LIEVQ SY FL EGL F + PIT +SG Sbjct: 13 KSSRMSYARQKEVVQMPNLIEVQTDSYKWFL----------EEGLNEVFDDISPITDYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 L+FV + D K+ +D+C RD TYA PLK+ +RL K +I E Sbjct: 63 KLSLDFVDFTLCEDEVKYTIDECKERDATYAAPLKVKVRLH---------NKETDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 114 EIFMGDLPLMTRTGTFVINGAERVIVSQLVRSPGIYYAIAHDKL---GKKLYSATVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG+ + EI+ F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGIGTNPEIIELFGEEPKILASFEKDAA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 231 TNYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDPRRYDLAKVGRYKFNKKLAL-KNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED+ + TGE+ EAG I + I ++ + + I ++ + N +V Sbjct: 290 SGHVLAEDVASPMTGEVLAEAGTKITRELASTIQNNAVPYVWISVEETERPIKVLSNMMV 349 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D V E ++ + + + +K ++ ++ Sbjct: 350 DLDAVVDV-------------DPEEVGVTEQVYYPVLAGILEETAGDIDELKDAIKRDIH 396 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G GT DDID+LGNRR+RSVGE+L+NQYR+GL R+E Sbjct: 397 -DLIPKHITKEDILASINYNMHLEYGIGTDDDIDHLGNRRIRSVGELLQNQYRIGLSRLE 455 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D++ + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 456 RVVRERMTTQDMEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 515 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL S+AR+N YGFIE PYR Sbjct: 516 LGPGGLSRDRAGFEVRDVHYSHYGRMCPVETPEGPNIGLINSLASYARINEYGFIEAPYR 575 Query: 604 KVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 K+ + VT++VVY++A EE+N ++AQAN LD++G F + V R E R Sbjct: 576 KINHDDPTNPVVTDEVVYMTADEEDNYHVAQANEQLDKEGHFVRKNVSGRYREETQEYER 635 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 D++D SPK V S+A +LIPFL+NDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 636 RMFDYMDVSPKMVFSVATALIPFLQNDDANRALMGSNMQRQAVPLLFTEAPVVGTGMEEK 695 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG +VA+ G VE+ + I +R +G + Y+L KFQRSNQ+ C NQ Sbjct: 696 AAVDSGVCVVAEEGGTVERSTSTEITVRQDDG-------KLKKYKLTKFQRSNQSNCYNQ 748 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 RP+V GD V + ++IADGPST G+L LG+N L+ FM W GYN+ED++L+SER+V +DV Sbjct: 749 RPIVFKGDRVEKGEVIADGPSTSNGELGLGKNPLIGFMTWEGYNYEDAVLLSERLVQDDV 808 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TSIHIEE+E ARDTKLGPEEITRDIP V ++ LKN+DE GII VGAEV GDILVGK+ Sbjct: 809 YTSIHIEEYEAEARDTKLGPEEITRDIPGVGDDALKNLDERGIIRVGAEVRAGDILVGKV 868 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R G D Sbjct: 869 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTREGGD 921 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 252/1142 (22%), Positives = 415/1142 (36%), Gaps = 66/1142 (5%) Query: 267 IDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGD 326 I+ E+VI S + G+ ++ + ++ + + Y+ Sbjct: 131 INGAERVIVSQLVRSPGIYYAIAHDKLGKKLYSATVIPNRGAWLEYETDSNDVFYVRVDR 190 Query: 327 VIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDV 386 I I P + ++ I + D + ++ LL++Y+ +RPG+ Sbjct: 191 TRKVPITVLIRALGIGTNPEI-IELFGEEPKILASFEKDAATNYQEGLLELYKKIRPGEP 249 Query: 387 STFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDL 446 AES+ +FFD +YDL+ VGR K N +L L + ++ + Sbjct: 250 LAVDSAESLITSMFFDPRRYDLAKVGRYKFNKKLALKNRISGHVLAEDVASPMT------ 303 Query: 447 RNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINA 506 G+ + + ++ + + ER IK + + + Sbjct: 304 --GEVLAEAGTKITRELASTIQNNAVPYVWISVEETERPIKVLSNMMVDLDAVVDVDPEE 361 Query: 507 KPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHY 566 V V + L + ++ L R + L + + + Y Sbjct: 362 VGVTEQVYYPVLAGILEETAGDIDELKDAI-KRDIHDLIPKHITKEDILASINYNMHLEY 420 Query: 567 GRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRY 626 G + N + S+ + + R V + T D+ +S N Sbjct: 421 GIGTDDDIDHLGN-RRIRSVGELLQNQYRIGLSRLERVVRERMTTQDMEGISPQSLINIK 479 Query: 627 IAQANSS----------LDEDGSFTEELVFCRCAGEEIL----VPREKIDFIDASPKQVV 672 A + + EL R R + D Sbjct: 480 PVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYG 539 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 + P N L + + + V + A Sbjct: 540 RMCPVETPEGPNIGLINSLASYARINEYGFIEAPYRKINHDDPTNPVVTDEVVYMTADEE 599 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL--VKVGDEVRR 790 A + + + +R V+ + + V Sbjct: 600 DNYHVAQANEQLDKEGHFVRKNVSGRYREETQEYERRMFDYMDVSPKMVFSVATALIPFL 659 Query: 791 NDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER-MVSEDVFTSIHIEEFEV 849 + A+ +L P G E+ + V + ++ Sbjct: 660 QNDDANRALMGSNMQRQAVPLLFTEAPVVGTGMEEKAAVDSGVCVVAEEGGTVERSTSTE 719 Query: 850 MARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPE 909 + G + + ++ I+ G V G+++ + + Sbjct: 720 ITVRQDDGKLKKYKLTKFQRSNQSNCYNQRPIVFKGDRVEKGEVIADGPSTSNGELGLGK 779 Query: 910 EKLLRAI--FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE---QI 964 L+ + G D S R+ T + + + D + R+ Sbjct: 780 NPLIGFMTWEGYNYEDAVLLSERLVQDDVYTSIHIEEYEAEARDTKLGPEEITRDIPGVG 839 Query: 965 ELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQF 1024 + ++ DE+ I+ R +IL G+ G L + E R Sbjct: 840 DDALKNL-DERGIIRVGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR------ 892 Query: 1025 AVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPI 1084 E + K+ + GD+M PGV + V++++A KR I Sbjct: 893 -----------EVRDTSLKVPHGEYGIVVDAKVFTREGGDEMSPGVNQSVRIYIAQKRKI 941 Query: 1085 QSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWA 1144 GDKMAGRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A Sbjct: 942 SVGDKMAGRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLA 1001 Query: 1145 CVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGV 1204 LG I + + D DI S E + + ++ + V + Sbjct: 1002 AKALGFNIATPVFDGANEIDIMDTLDLAND-YVNLSWEEFEAKHKEELLPEVLQYLSD-- 1058 Query: 1205 PVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVS 1264 + + + G+ L DG TGE FD PVT+G+++ LKL+H+V Sbjct: 1059 -----------NREHRKLWKGVPISRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVD 1107 Query: 1265 DKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVG 1324 DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDV+G Sbjct: 1108 DKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVIG 1167 Query: 1325 RTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCE 1384 R + YE+I+ G + E G PESF VL+KE+Q+LGL + + ME D + + Sbjct: 1168 RVKTYEAIIKGENIPEPGIPESFKVLLKELQSLGLDVRVLRDDNTEVEIMET-SDMGETD 1226 Query: 1385 LK 1386 + Sbjct: 1227 FR 1228 >gi|322410928|gb|EFY01836.1| DNA-directed RNA polymerase subunit beta [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1188 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 428/963 (44%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DSGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGESDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG + +E I D+ Sbjct: 278 YKVNKKLNIKTRLLNQIIAENLVDAETGEILVEAGTEMTRSVIESIEEHLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFIYTPN----DYAVITEPVVLQKFKVVSPIDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D D + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNDVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV +VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGRVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFSASVVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PFVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR+IPNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 178/590 (30%), Positives = 255/590 (43%), Gaps = 80/590 (13%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTSIHIEEFEVMARDTKLGP 858 ++ P+ G E S V + + E + + G Sbjct: 643 MGANMQRQAVPLIDPKAPFVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAEKVEVRREDGS 702 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 ++ ++ ++ VG V GD + + M + + A Sbjct: 703 LDVYHITKFRRSNSGTAYNQRTLVKVGDIVEKGDFIADGPS-MENGEMALGQNPVVAYMT 761 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER--EQI----ELLARDKD 972 + + D + V V + + + E +I E +D Sbjct: 762 WEGYNFEDAVIMSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDL- 820 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 DE I+ + +IL G+ G K L + + R +V+ Sbjct: 821 DEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSR-----------EVR 869 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + + KI GD++ GV +V+V++A KR I+ GDKMAG Sbjct: 870 DTSLRVPHGGDGIVRDV------KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAG 923 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG+VSRI+P EDMP+L DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I Sbjct: 924 RHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHI 983 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D ++ D+ T ++D Sbjct: 984 ATPVFDGASSEDLWDTVREAGMDSDAK----------------------------TVLYD 1015 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G TGEPFD V+VG +YM+KL+HMV DK++ARS Sbjct: 1016 G--------------------------RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSV 1049 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I Sbjct: 1050 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAI 1109 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 G + G PESF VLVKE+Q+LGL + + + + + Sbjct: 1110 TKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|222152310|ref|YP_002561485.1| DNA-directed RNA polymerase subunit beta [Streptococcus uberis 0140J] gi|254765309|sp|B9DSZ5|RPOB_STRU0 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|222113121|emb|CAR40524.1| DNA-directed RNA polymerase beta chain [Streptococcus uberis 0140J] Length = 1188 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 425/963 (44%), Positives = 585/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRINEVLDLPNLIEIQTDSFQDFL----------DTGLREVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E D+KDI + RIDR RK+P T+ + ALG +EIL F + Sbjct: 159 GSTVIPNRGAWLELETDAKDIAYTRIDRTRKIPFTTLVRALGFSGDDEILDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++V+ ETGEI +EAG + +E I D+ Sbjct: 278 YKINKKLNVKTRLLNQIIAENLVDSETGEILVEAGTEMTRDVIESIEAHIDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVVLQKFKVQSPLDPDKV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ATPDDKVRALTPADILAEMSYFLNLSEGIGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D D + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNDVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRATGVVTNEIVWLTADEEDEFTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFAASTVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PFVGTGMEYQAAHDSGAAVIAQHDGKVVFSDAEKVEVRREDGSLD-------VYHVTKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDIVEKGDFIADGPSMEKGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR++PNV EE L+++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREVPNVGEEALRDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 170/508 (33%), Positives = 235/508 (46%), Gaps = 79/508 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDIVEKGDFIADGPS-MEKGEMALGQNPVVAYMTWEGYNFEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER------EQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 + + + E E RD DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREVPNVGEEALRDL-DEMGIIRIGAEVKEGDILVGKV 842 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K L + + R +V+ + + + Sbjct: 843 TPKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGIVRDV----- 886 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L D Sbjct: 887 -KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPD 945 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D D+ + Sbjct: 946 GTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGATAEDLWDTVAEAGM 1005 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 + ++L G Sbjct: 1006 -----------------------------------------DSDAKTIL------YDG-- 1016 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1017 -----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRF 1071 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+ Sbjct: 1072 GEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKEL 1131 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNK 1382 Q+LGL + + + + + Sbjct: 1132 QSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|253681374|ref|ZP_04862171.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum D str. 1873] gi|253561086|gb|EES90538.1| DNA-directed RNA polymerase, beta subunit [Clostridium botulinum D str. 1873] Length = 1241 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 426/950 (44%), Positives = 591/950 (62%), Gaps = 55/950 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K E+ +P+LIEVQ SYD F EGL F + PI ++G Sbjct: 9 KRTRMSFSKVKEMCPMPNLIEVQLNSYDWF----------WKEGLNEVFDDINPIQDYTG 58 Query: 71 AAMLEFVSYEFDP--PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +LEF+ Y D K+ V++C RD TYA PLK+ +RL+ K ++KEQ Sbjct: 59 NLILEFIDYNLDRDAIKYSVEECKERDATYAAPLKVKVRLL---------NKETGEVKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTFVI G +R++VSQL RSPG ++ +D + GK L++ +IP++ Sbjct: 110 EVFMGDFPLMTQQGTFVINGAERVIVSQLVRSPGAYYGYDVDKT---GKKLFSATVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS--QRGDFW 245 G W++ E DS DII+VRID+ RK+P++ + ALG+ S+ EI+ F + D Sbjct: 167 GAWLEYETDSNDIIYVRIDKTRKLPISILIRALGLGSDAEIIEWFGEEERLKSTIEKDNT 226 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 A + +D+ +I S L + + K K L I L Sbjct: 227 KTREEALLEIYKRLRPGEPPTVDSAVSLINSLFFDAKRYDLSRVGRYKFNKKLAIYI-RL 285 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 AED+VN TGEI ++ G+ I+ EI + I + I D + I N V Sbjct: 286 LNQVAAEDVVNPFTGEIIVQKGETIERDKALEIQNCAINAVNIQVEDKIIK--VIGNNFV 343 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 N D ++ + + + + + Y + ++ ++ Sbjct: 344 DIHNFVDFD-----ISDLKIKEHVHYPTLKKILDN-------YTDEESIKEEIRKNIHEL 391 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 P +HI +DI A + + L GTIDDID+LGNRR+RSVGE+L+NQ+R+GL RME Sbjct: 392 IP---KHIVVDDIYATVSYELGLPYSVGTIDDIDHLGNRRLRSVGELLQNQFRIGLSRME 448 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R +KER++ D + + PQ LIN +PV +A+ EFF SSQLSQ + N LS +TH RRLSA Sbjct: 449 RVVKERMTIQDQEVITPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSA 508 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL +A+VN YGFIETPYR Sbjct: 509 LGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLACYAKVNEYGFIETPYR 568 Query: 604 KV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 V D +V ++VYL+A EE++ +AQA LDE+G F E+ + R + I+V + ++ Sbjct: 569 LVDKKDARVKEEIVYLTADEEDHYLVAQAKEPLDEEGHFLEDKITVRTLEDVIVVSKHQV 628 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D +D SP Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK AP VGTG+E A Sbjct: 629 DLMDVSPSQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPAAPIVGTGIEFKAAV 688 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG A+ G+VE V + + IR + G+D +L+K++RSNQ TC+NQRP+ Sbjct: 689 DSGVLPKAEHDGVVEYVSSTEVRIRRD------ADGGLDRCKLLKYKRSNQGTCINQRPI 742 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V G++++ D++ADGPSTD G++ALG+N+ + F+ W GYN+ED+ML+SE++V +D+FTS Sbjct: 743 VSKGEKLKAGDVLADGPSTDFGEIALGQNIRMGFITWEGYNYEDAMLVSEQLVRDDIFTS 802 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE+E ARDTKLGPEEITRDIPNV E+ LKNIDE GI+ +GAEV GDILVGK+TPK Sbjct: 803 IHIEEYESEARDTKLGPEEITRDIPNVGEDALKNIDERGIVRIGAEVRSGDILVGKVTPK 862 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 GE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV++F R D Sbjct: 863 GETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRENGD 912 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 192/628 (30%), Positives = 269/628 (42%), Gaps = 79/628 (12%) Query: 760 DIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWH 819 D+ + K Q + +Q V + A +L P Sbjct: 619 DVIVVSKHQVDLMDVSPSQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPAAPIV 678 Query: 820 GYNFEDSMLISERMVSEDVFTSI--HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNID 877 G E + ++ + + ++ EV R G + + + I+ Sbjct: 679 GTGIEFKAAVDSGVLPKAEHDGVVEYVSSTEVRIRRDADGGLDRCKLLKYKRSNQGTCIN 738 Query: 878 ECGIICVGAEVNPGDILVGKITPK-----GESPMTPEEKLLRAIFGEKAVDVRDTSLRVP 932 + I+ G ++ GD+L + + E A+ V + +R Sbjct: 739 QRPIVSKGEKLKAGDVLADGPSTDFGEIALGQNIRMGFITWEGYNYEDAMLVSEQLVRDD 798 Query: 933 SGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCG 992 S + + R E E ++ DE+ I+ R +IL G Sbjct: 799 IFTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNI-DERGIVRIGAEVRSGDILVG 857 Query: 993 QNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDR 1052 + G L + E R E Sbjct: 858 KVTPKGETELTAEERLLRAIFGEKAR-----------------EVRDTSLRVPHGEAGII 900 Query: 1053 FKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFL 1112 K+ + GD++PPGV +V+ ++A KR I GDKMAGRHGNKG++SRILP EDMPFL Sbjct: 901 VDVKVFTRENGDELPPGVNELVRCYIAQKRKISVGDKMAGRHGNKGVISRILPEEDMPFL 960 Query: 1113 KDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFL 1172 DG P+ I LNPLGVPSRMN+GQ+ E HLGWA +G I + + + +I L Sbjct: 961 PDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAAGEMGWHIATPVFNGAFEDEIVDLLKEA 1020 Query: 1173 EKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESG 1232 DG Sbjct: 1021 GYNA-----------------------------------DGKTV---------------- 1029 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 LYDG TGEPFD VTVGY+Y+LKL+H+V DK++ARSTG YSLVTQQPLGGK+ GGQ Sbjct: 1030 ---LYDGRTGEPFDNRVTVGYMYILKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQ 1086 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAA+ LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+K Sbjct: 1087 RFGEMEVWALEAYGAAHTLQEVLTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIK 1146 Query: 1353 EMQALGLSIDLENSRTKNSAKMEEIPDF 1380 E+QAL L + + + + E + + Sbjct: 1147 ELQALCLDVKVLSGDNEEITIRESVDEE 1174 >gi|254517462|ref|ZP_05129518.1| RNA polymerase subunit beta [Clostridium sp. 7_2_43FAA] gi|226911211|gb|EEH96412.1| RNA polymerase subunit beta [Clostridium sp. 7_2_43FAA] Length = 1235 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 436/950 (45%), Positives = 594/950 (62%), Gaps = 55/950 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R FGK ++ ++P+LIEVQ SY FL EGL F+ + PIT F+G Sbjct: 9 KRTRMSFGKVKDVTEMPNLIEVQLDSYQWFL----------KEGLHEVFEDINPITNFTG 58 Query: 71 AAMLEFVSYEFD--PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 +LEFV Y+ D K+ V+ C RD TYA PLK+++RL +IKEQ Sbjct: 59 NLVLEFVDYKLDMDNIKYSVEKCKERDATYAAPLKVSVRL---------QNNETGEIKEQ 109 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 ++MGD PLMT+ GTF+I G +R++VSQL RSPG+++ + + G+ LY+ +IP++ Sbjct: 110 EVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYSFNVDKT---GEKLYSSTVIPNR 166 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS--QRGDFW 245 G W++ E DS DII+VRID+ RK+P++ A+G S+ E+L F + D Sbjct: 167 GAWLEYETDSNDIIYVRIDKTRKLPISILARAMGFGSDQELLDYFGEDERFKATIEKDNT 226 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 A + +D+ +I+S L + + K K L + L Sbjct: 227 KTKEEALLEIYKRLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLALNL-RL 285 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 A DIVN +TGEI +E G I EEI + I + IL D V I N V Sbjct: 286 VNQVAATDIVNPQTGEIMVEQGKKISRSLAEEIQNVGINSVDILVEDRVVR--VIGNHFV 343 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 D K+ + + ++ + + + + YD + ++ LN Sbjct: 344 -----DIKNFVSFNIEDLNIRELVHYPTLKEILDN-------YDDEDTIKEEIKKNLNRL 391 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 P +HI ++DI A I + L G +DDID+LGNRR+RSVGE+L+NQ+R+GL RME Sbjct: 392 IP---KHIIRDDIFATISYELGLPYSVGYVDDIDHLGNRRLRSVGELLQNQFRIGLSRME 448 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R +KER++ D +++ PQ LIN +PV +A+ EFF SSQLSQ + VN LS +TH RRLSA Sbjct: 449 RVVKERMTIQDQEAITPQMLINIRPVAAAIKEFFGSSQLSQFMDQVNPLSELTHKRRLSA 508 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL ++A+VN YGFIETPYR Sbjct: 509 LGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFIETPYR 568 Query: 604 KV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKI 661 + G +T+++ Y +A EE+ +AQA + ED F + V R + ++V +++ Sbjct: 569 VIDKEKGIITDEIRYFTADEEDLYLVAQAKEPIGEDRKFVDSRVTVRSKHDILVVNADEV 628 Query: 662 DFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAK 721 D ID SP+Q+VS+A ++IPFLENDD++R LMG NMQRQAVPLLK +AP VGTG+E A Sbjct: 629 DLIDVSPRQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPVVGTGIEFKAAV 688 Query: 722 SSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL 781 SG AK AG V V + I I+ G+D Y L+KF+RSNQ TC+NQRPL Sbjct: 689 DSGVLPKAKNAGKVVYVSSNEIRIKRD------VDGGIDTYNLLKFKRSNQGTCINQRPL 742 Query: 782 VKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTS 841 V G+ V +N ++ADGPSTDLG++ALG+N+ + F+ W GYN+ED+MLISE +V EDVFTS Sbjct: 743 VDKGEIVFKNQVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVREDVFTS 802 Query: 842 IHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPK 901 IHIEE+E ARDTKLGPEEITRDIPNVSE+ LK+ID+ GII +GAEV GDILVGK+TPK Sbjct: 803 IHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSGDILVGKVTPK 862 Query: 902 GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 GE+ +T EE+LLRAIFGEKA +VRDTSLRVP G +G +VDV++F R D Sbjct: 863 GETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRENGD 912 Score = 516 bits (1329), Expect = e-143, Method: Composition-based stats. Identities = 253/1104 (22%), Positives = 403/1104 (36%), Gaps = 132/1104 (11%) Query: 316 ETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALL 375 ++ +I D + + + + +D + + T+ D K +++ALL Sbjct: 175 DSNDIIYVRIDKTRKLPISILARAMGFGSDQELLDYFGEDERFKATIEKDNTKTKEEALL 234 Query: 376 DIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKED 435 +IY+ +RPG+ T A S+ + LFFD+ +YDLS VGR K N +L L+ + Sbjct: 235 EIYKRLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLALNLRLVNQV----- 289 Query: 436 IIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDI 495 +V+ + G+ ++ + + + N + + R ++ + Sbjct: 290 ---AATDIVNPQTGEIMVEQGKKISRSLAEEIQNVGINSVDILVED--RVVRVIGNHFVD 344 Query: 496 DSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAG 555 I + V L ++ I + L+ L + R Sbjct: 345 IKNFVSFNIEDLNIRELVHYPTLKEILDNYDDEDTIKEEI--KKNLNRLIPKHIIRDDIF 402 Query: 556 VEMRDVH--PTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTND 613 + P G + + + V L + + R V + D Sbjct: 403 ATISYELGLPYSVGYVDDIDHLGNRRLRSVGELL---QNQFRIGLSRMERVVKERMTIQD 459 Query: 614 VVYLSAMEEENRY-IA------QANSSLDEDGSFTEELVFCRCAG------------EEI 654 ++ N +A +S L + L E Sbjct: 460 QEAITPQMLINIRPVAAAIKEFFGSSQLSQFMDQVNPLSELTHKRRLSALGPGGLSRERA 519 Query: 655 LVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRV-LMGCNMQRQAVPLLKAEAPFVGT 713 + + L N + + ++ E + Sbjct: 520 GFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFIETPYRVIDKEKGIITD 579 Query: 714 GMESVVA--KSSGAAIVAKRA--GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR 769 + A + AK + VD+ R+ +RS L + VD+ + Sbjct: 580 EIRYFTADEEDLYLVAQAKEPIGEDRKFVDS-RVTVRSKHDILVVNADEVDLIDVSP--- 635 Query: 770 SNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLI 829 Q V + A +L P G E + Sbjct: 636 -------RQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPVVGTGIEFKAAV 688 Query: 830 SERMV--SEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 ++ +++ +++ E+ + G + + I++ ++ G Sbjct: 689 DSGVLPKAKNAGKVVYVSSNEIRIKRDVDGGIDTYNLLKFKRSNQGTCINQRPLVDKGEI 748 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAI-----FGEKAVDVRDTSLRVPSGVSGTVVDV 942 V +L + + + I E A+ + + +R S + + Sbjct: 749 VFKNQVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVREDVFTSIHIEEY 808 Query: 943 RIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGF 1002 R E E +D DD I+ R +IL G+ G Sbjct: 809 ECEARDTKLGPEEITRDIPNVSEDALKDIDDR-GIIRIGAEVRSGDILVGKVTPKGETEL 867 Query: 1003 KKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQW 1062 L + E R E K+ + Sbjct: 868 TAEERLLRAIFGEKAR-----------------EVRDTSLRVPHGEAGIIVDVKVFTREN 910 Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122 GD++ PGV +V+ ++A KR I GDKMAGRHGNKG++SR+LP EDMPFL DG P+ I L Sbjct: 911 GDELNPGVNELVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICL 970 Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182 NPLGVPSRMN+GQ+ E HLGWA LG I + + D DI Sbjct: 971 NPLGVPSRMNIGQVLEVHLGWAASQLGWHIATPVFDGATEKDIEDCLEKAGYNANGK--- 1027 Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242 T ++DG TG Sbjct: 1028 -------------------------TVLYDG--------------------------RTG 1036 Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302 E FD VTVG +Y+LKL H+V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW + Sbjct: 1037 EAFDNEVTVGIMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1096 Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362 +AYGAA+ LQE+LT+KSDDVVGR + YE+IV G + E G PESF VL+KE+QAL L + Sbjct: 1097 EAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVK 1156 Query: 1363 LENSRTKNSAKMEEIPDFNKCELK 1386 + N +++E + + +L+ Sbjct: 1157 VLN-DENEEVRLKEFAEEDMEDLE 1179 >gi|307704126|ref|ZP_07641054.1| DNA-directed RNA polymerase, beta subunit [Streptococcus mitis SK597] gi|307622348|gb|EFO01357.1| DNA-directed RNA polymerase, beta subunit [Streptococcus mitis SK597] Length = 1203 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVVTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRIVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|291459928|ref|ZP_06599318.1| DNA-directed RNA polymerase, beta subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291417269|gb|EFE90988.1| DNA-directed RNA polymerase, beta subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 1351 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 436/961 (45%), Positives = 601/961 (62%), Gaps = 55/961 (5%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 V G VR F ++ E++++P+LIE+QK SY FL EGL+ AF + Sbjct: 30 MRPVRTG-KNVRMTFSQSKEVLEMPNLIEIQKDSYRWFL----------KEGLREAFDDI 78 Query: 63 FPITAFSGAAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 PI F+G LEFV+++ + K+ +++C RD TYA PLK+ +RLI D D Sbjct: 79 SPIQDFAGHMSLEFVNFKLCEEEKKYTIEECKERDATYAAPLKVKVRLINKDKD------ 132 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +I E I+MGDLPLMT+ G+FVI G +R++VSQL RSPGI++ D+ + GK LY Sbjct: 133 ---EINEHEIFMGDLPLMTETGSFVINGAERVIVSQLVRSPGIYYSIDRDKL---GKELY 186 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIV 237 +C +IP++G W++ E DS D+ VR+DR RKVPVT F+ ALG+ S EI+ F K++ Sbjct: 187 SCTVIPNRGAWIEYETDSNDVFFVRVDRTRKVPVTVFIRALGIGSNAEIIELFGEEPKLL 246 Query: 238 YSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKF 295 S D + + +D+ E ++ S L K + K K Sbjct: 247 ASFEKDPSDNYQDGLLELYKKIRPGEPLSVDSAESLLRSMFFDPRRYDLAKVGRYKFNKK 306 Query: 296 LGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN 355 L + + GL +AED+ + TGE+ EAG V+ + EEI ++ +P +++D + Sbjct: 307 L-HFKNRIRGLSLAEDVADPATGELLAEAGTVLSREKAEEIQNAG---VPYVWIDGPSRK 362 Query: 356 AYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVK 415 + ++L D + + +R ++ + ++ + + S+ R Sbjct: 363 EKVLSSLQVDASSYFPEDFDLASLGIR--ELVYYPALRALLDEMEGASEAE-----LREA 415 Query: 416 MNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQY 475 + ++ P +HI +EDI A I ++L G DDID+LGNRR+R+VGE+L+NQY Sbjct: 416 VKKHIHELVP---KHITREDIFASINYCMNLEEEIGNPDDIDHLGNRRIRAVGELLQNQY 472 Query: 476 RLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRI 535 R+GL RMER ++ER+S+ DI+ + PQ LIN KPV ++V EFF SSQLSQ + N LS + Sbjct: 473 RIGLSRMERVVRERMSTQDIEEITPQSLINIKPVTASVKEFFGSSQLSQFMDQNNPLSEL 532 Query: 536 THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 TH RRLSALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+AR+N Y Sbjct: 533 THKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYARINEY 592 Query: 596 GFIETPYRKV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA 650 GFIE+PYR V D VT+ VVYL+A EE+N +AQAN +D +G F + V R Sbjct: 593 GFIESPYRVVDKSDPKDPVVTDRVVYLAADEEDNYRVAQANEPIDSEGHFVNDSVSGRYR 652 Query: 651 GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF 710 P+ ID +D SPK V S+A S+IPFL+NDD+NR LMG NMQRQAVPLL E Sbjct: 653 ELTSAFPKASIDMMDVSPKMVFSVATSMIPFLQNDDANRALMGSNMQRQAVPLLVTEPAV 712 Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRS 770 V TGM + A SGA +VA+ +G V + RIVI+ + +D Y+LMKF RS Sbjct: 713 VDTGMSAKAAVDSGACVVAENSGEVLVSASNRIVIKRDK------DGVLDEYKLMKFVRS 766 Query: 771 NQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS 830 N + C NQ+P+V + V + DIIADGPST G++ALG+N L+ FM W GYN+ED++L+S Sbjct: 767 NPSNCYNQKPIVSPHEHVEKGDIIADGPSTSAGEIALGKNPLIGFMTWEGYNYEDAVLLS 826 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 ER+V +DV+TS+HIEE+E ARDTKLGPEEIT D+P V EE LKN+DE GII +GAEV Sbjct: 827 ERLVQQDVYTSVHIEEYECEARDTKLGPEEITSDVPGVGEEALKNLDERGIIRIGAEVRA 886 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 GDILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G GTV++ +F R Sbjct: 887 GDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAYGTVINTMVFTRENS 946 Query: 951 D 951 D Sbjct: 947 D 947 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 251/1183 (21%), Positives = 423/1183 (35%), Gaps = 89/1183 (7%) Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVK 294 K+ + + + I+ E+VI S + G+ S+ + Sbjct: 123 KVRLINKDKDEINEHEIFMGDLPLMTETGSFVINGAERVIVSQLVRSPGIYYSIDRDKLG 182 Query: 295 FLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNN 354 + + + ++ I I + ++ Sbjct: 183 KELYSCTVIPNRGAWIEYETDSNDVFFVRVDRTRKVPVTVFIRALGIGSNAEI-IELFGE 241 Query: 355 NAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRV 414 + + D + + +D LL++Y+ +RPG+ + AES+ +FFD +YDL+ VGR Sbjct: 242 EPKLLASFEKDPSDNYQDGLLELYKKIRPGEPLSVDSAESLLRSMFFDPRRYDLAKVGRY 301 Query: 415 KMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQ 474 K N +L+ + +R + + +A L + + Sbjct: 302 KFNKKLHFK--NRIRGLSLAEDVADPATGELLAEAGTVLSREKAEEIQNAGVP-----YV 354 Query: 475 YRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 + G R E+ + VD S P+D + E L L + + S Sbjct: 355 WIDGPSRKEKVLS--SLQVDASSYFPEDF---DLASLGIRELVYYPALRALLDEMEGASE 409 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN------IGLVSSLTS 588 R + E D+ + + E + + ++ Sbjct: 410 -AELREAVKKHIHELVPKHITRE--DIFASINYCMNLEEEIGNPDDIDHLGNRRIRAVGE 466 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSS----------LDEDG 638 + + R V + T D+ ++ N A+ + Sbjct: 467 LLQNQYRIGLSRMERVVRERMSTQDIEEITPQSLINIKPVTASVKEFFGSSQLSQFMDQN 526 Query: 639 SFTEELVFCRC---------AGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNR 689 + EL R + + + + + L N ++ Sbjct: 527 NPLSELTHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLINSLASY 586 Query: 690 VLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE 749 + +++ V + +A +V I S Sbjct: 587 ARI------NEYGFIESPYRVVDKSDPKDPVVTDRVVYLAADEEDNYRVAQANEPIDSEG 640 Query: 750 GDLDPSTSGVDIYRLMKFQR-SNQNTCVNQRPL--VKVGDEVRRNDIIADGPSTDLGDLA 806 ++ S SG F + S V+ + + V + A+ Sbjct: 641 HFVNDSVSGRYRELTSAFPKASIDMMDVSPKMVFSVATSMIPFLQNDDANRALMGSNMQR 700 Query: 807 LGRNMLVA--FMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRD 864 +LV + G + + ++ +V+E+ + ++ + K G + + Sbjct: 701 QAVPLLVTEPAVVDTGMSAKAAVDSGACVVAENSGEVLVSASNRIVIKRDKDGVLDEYKL 760 Query: 865 IPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDV 924 + V ++ I+ V GDI+ + + + L + + Sbjct: 761 MKFVRSNPSNCYNQKPIVSPHEHVEKGDIIADGPST-SAGEIALGKNPLIGFMTWEGYNY 819 Query: 925 RDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIE-----LLARDKDDEQVILD 979 D L V V + + + + E + A DE+ I+ Sbjct: 820 EDAVLLSERLVQQDVYTSVHIEEYECEARDTKLGPEEITSDVPGVGEEALKNLDERGIIR 879 Query: 980 RNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLK 1039 R +IL G+ G L + E R E Sbjct: 880 IGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRD 922 Query: 1040 VQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGI 1099 + + + D++ PGV V++++A KR I GDKMAGRHGNKG+ Sbjct: 923 TSLKVPHGAYGTVINTMVFTRENSDELAPGVSESVRIYIAQKRKIGVGDKMAGRHGNKGV 982 Query: 1100 VSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDY 1159 VSR+LP EDMP+L +G +DIVLNPLGVPSRMN+GQ+ E HL A LG + + I D Sbjct: 983 VSRVLPVEDMPYLPNGRSLDIVLNPLGVPSRMNIGQVLELHLSLAAKALGLDVSTPIFDG 1042 Query: 1160 KANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAI 1219 DI + ++ K Sbjct: 1043 ADENDIQQTLILANDYVNESWEDFSKKHKEELDPAVYDYLGKHL--------------EH 1088 Query: 1220 NSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVT 1279 + + G+ L DG TGE FD P +G+++ LKL+H+V DK++ARSTG YSLVT Sbjct: 1089 REEWKGVTISVDGKVQLRDGRTGEMFDGPTAIGFMHYLKLHHLVDDKIHARSTGPYSLVT 1148 Query: 1280 QQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTF 1339 QQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT+KSDDV GR + YE+I+ G + Sbjct: 1149 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTMKSDDVAGRVKTYEAIIKGQNIP 1208 Query: 1340 ETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 G PESF VL+KEMQAL L + + + + E++ D N+ Sbjct: 1209 APGVPESFKVLLKEMQALCLDMRVLDEKKNEVEITEDLYDANQ 1251 >gi|195977259|ref|YP_002122503.1| DNA-directed RNA polymerase subunit beta [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225869575|ref|YP_002745522.1| DNA-directed RNA polymerase beta chain [Streptococcus equi subsp. equi 4047] gi|226699450|sp|B4U047|RPOB_STREM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765305|sp|C0M7C8|RPOB_STRE4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|195973964|gb|ACG61490.1| DNA-directed RNA polymerase beta chain RpoB [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225698979|emb|CAW92040.1| DNA-directed RNA polymerase beta chain [Streptococcus equi subsp. equi 4047] Length = 1188 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 425/963 (44%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DSGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIIDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + + +G Sbjct: 219 NTIEKDI-HKNQSDSRTDEALKEIYERLRPGEPKTADSSRSLLTARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++++ ETGEI +EAG + +E I D+ Sbjct: 278 YKINKKLNIKTRLLNQIIAENLIDSETGEILVEAGTEMTRSVIESIEEQLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVILQKFKVVSPVDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D D + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNDVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV +VTN++V+L+A EE+ +AQANS L+ DG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRVIGRVTNEIVWLTADEEDEFTVAQANSKLNPDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P ++DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPASQVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA R+ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAERVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVK+GD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKIGDIVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR++PNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREVPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 169/508 (33%), Positives = 235/508 (46%), Gaps = 79/508 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +G V GD + + + M + + A + + D + V V Sbjct: 725 LVKIGDIVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER------EQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 + + + E E +D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREVPNVGEEALKDL-DEMGIIRIGAEVKEGDILVGKV 842 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K L + + R +V+ + + + Sbjct: 843 TPKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGIVRDV----- 886 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L D Sbjct: 887 -KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPD 945 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D + D+ Sbjct: 946 GTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGATSEDLWETVREAGM 1005 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 T ++DG Sbjct: 1006 DSDAK----------------------------TVLYDG--------------------- 1016 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1017 -----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRF 1071 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+ Sbjct: 1072 GEMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKEL 1131 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNK 1382 Q+LGL + + + + + Sbjct: 1132 QSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|225867707|ref|YP_002743655.1| DNA-directed RNA polymerase beta chain [Streptococcus equi subsp. zooepidemicus] gi|259494193|sp|C0MEE3|RPOB_STRS7 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|225700983|emb|CAW97721.1| DNA-directed RNA polymerase beta chain [Streptococcus equi subsp. zooepidemicus] Length = 1188 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 425/963 (44%), Positives = 590/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFL----------DSGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIIDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + + +G Sbjct: 219 NTIEKDI-HKNQSDSRTDEALKEIYERLRPGEPKTADSSRSLLTARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++++ ETGEI +EAG + +E I D+ Sbjct: 278 YKINKKLNIKTRLLNQIIAENLIDSETGEILVEAGTEMTRSVIESIEEQLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N Y N D + +L ++V+ P D ++ Sbjct: 332 --NKFVYTPN----DYAVVTEPVILQKFKVVSPVDPDRV------------------VTI 367 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 VG + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 368 VGN--------ANPDDKVRALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D D + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNDVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV +VTN++V+L+A EE+ +AQANS L+ DG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRVIGRVTNEIVWLTADEEDEFTVAQANSKLNPDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P ++DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGNNQEFPASQVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA R+ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQHNGKVVFSDAERVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVK+GD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKIGDIVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR++PNV EE LK++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREVPNVGEEALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 169/508 (33%), Positives = 235/508 (46%), Gaps = 79/508 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ +G V GD + + + M + + A + + D + V V Sbjct: 725 LVKIGDIVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKEDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER------EQIELLARDKDDEQVILDRNIYSRLMEILCGQN 994 + + + E E +D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREVPNVGEEALKDL-DEMGIIRIGAEVKEGDILVGKV 842 Query: 995 AVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFK 1054 G K L + + R +V+ + + + Sbjct: 843 TPKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGDGIVRDV----- 886 Query: 1055 NKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKD 1114 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L D Sbjct: 887 -KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPD 945 Query: 1115 GTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEK 1174 GTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D + D+ Sbjct: 946 GTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGATSEDLWETVREAGM 1005 Query: 1175 VIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQS 1234 T ++DG Sbjct: 1006 DSDAK----------------------------TVLYDG--------------------- 1016 Query: 1235 ILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 TGEPFD V+VG +YM+KL+HMV DK++ARS G YSLVTQQPLGGK+ GGQR Sbjct: 1017 -----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRF 1071 Query: 1295 GEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEM 1354 GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I G + G PESF VLVKE+ Sbjct: 1072 GEMEVWALEAYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKEL 1131 Query: 1355 QALGLSIDLENSRTKNSAKMEEIPDFNK 1382 Q+LGL + + + + + Sbjct: 1132 QSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|194396940|ref|YP_002038544.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae G54] gi|226699452|sp|B5E2F3|RPOB_STRP4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|194356607|gb|ACF55055.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae G54] Length = 1203 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDITYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVVTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYNGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRV 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRVNGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|225859717|ref|YP_002741227.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae 70585] gi|254765307|sp|C1CA06|RPOB_STRP7 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|225721911|gb|ACO17765.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae 70585] Length = 1198 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDITYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVVTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRV 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRVNGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|116516435|ref|YP_817182.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae D39] gi|148989960|ref|ZP_01821235.1| DNA-directed RNA polymerase beta subunit [Streptococcus pneumoniae SP6-BS73] gi|148998490|ref|ZP_01825931.1| DNA-directed RNA polymerase beta subunit [Streptococcus pneumoniae SP11-BS70] gi|168484260|ref|ZP_02709212.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|168487101|ref|ZP_02711609.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|168492064|ref|ZP_02716207.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae CDC0288-04] gi|168576638|ref|ZP_02722504.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae MLV-016] gi|225857535|ref|YP_002739046.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae P1031] gi|225861777|ref|YP_002743286.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae Taiwan19F-14] gi|298229974|ref|ZP_06963655.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254765|ref|ZP_06978351.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503732|ref|YP_003725672.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae TCH8431/19A] gi|303254114|ref|ZP_07340229.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae BS455] gi|303260335|ref|ZP_07346305.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae SP-BS293] gi|303262483|ref|ZP_07348425.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae SP14-BS292] gi|303265113|ref|ZP_07351026.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae BS397] gi|303266025|ref|ZP_07351920.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae BS457] gi|303268043|ref|ZP_07353844.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae BS458] gi|307068570|ref|YP_003877536.1| DNA-directed RNA polymerase subunit beta/140 kD subunit [Streptococcus pneumoniae AP200] gi|122277972|sp|Q04IK6|RPOB_STRP2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|158518627|sp|Q8DNF0|RPOB_STRR6 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765311|sp|C1CMQ8|RPOB_STRZP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765312|sp|C1CTL4|RPOB_STRZT RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|116077011|gb|ABJ54731.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae D39] gi|147755683|gb|EDK62729.1| DNA-directed RNA polymerase beta subunit [Streptococcus pneumoniae SP11-BS70] gi|147924620|gb|EDK75706.1| DNA-directed RNA polymerase beta subunit [Streptococcus pneumoniae SP6-BS73] gi|172042457|gb|EDT50503.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|183569961|gb|EDT90489.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|183573741|gb|EDT94269.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae CDC0288-04] gi|183577612|gb|EDT98140.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae MLV-016] gi|225726024|gb|ACO21876.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae P1031] gi|225728394|gb|ACO24245.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298239327|gb|ADI70458.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae TCH8431/19A] gi|301802640|emb|CBW35406.1| DNA-directed RNA polymerase beta chain [Streptococcus pneumoniae INV200] gi|302598947|gb|EFL65978.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae BS455] gi|302636383|gb|EFL66876.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae SP14-BS292] gi|302638501|gb|EFL68966.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae SP-BS293] gi|302642403|gb|EFL72749.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae BS458] gi|302644466|gb|EFL74718.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae BS457] gi|302645330|gb|EFL75564.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae BS397] gi|306410107|gb|ADM85534.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Streptococcus pneumoniae AP200] gi|327389125|gb|EGE87471.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae GA04375] Length = 1203 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDITYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVVTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRV 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRVNGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|67550160|gb|AAY68426.1| RNA polymerase subunit B [Pseudomonas fluorescens] Length = 714 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 391/718 (54%), Positives = 534/718 (74%), Gaps = 5/718 (0%) Query: 578 HNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDED 637 N+GL++SL ++AR N YGF+E+PYR V D VT+++V+LSA+EE + IAQA+++++E+ Sbjct: 1 PNVGLINSLAAYARTNQYGFLESPYRVVKDALVTDEIVFLSAIEEADHVIAQASATMNEE 60 Query: 638 GSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQ 697 +ELV R E + E + +D SPKQVVS+AASLIPFLE+DD+NR LMG NMQ Sbjct: 61 KVLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQ 120 Query: 698 RQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTS 757 RQAVP L+A+ P VGTGME VA+ SG +VA+R G+++ VDA RIV+R + +++ + Sbjct: 121 RQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVADDEVETGEA 180 Query: 758 GVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMP 817 GVDIY L K+ RSNQ+TC+NQRPLV+ GD V+R+DI+ADGPSTD+G+LALG+NM +AFM Sbjct: 181 GVDIYNLTKYTRSNQDTCINQRPLVRKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMA 240 Query: 818 WHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNID 877 W+G+NFEDS+ +SER+V ED FT+IHI+E +ARDTKLGPEEI DIPNV E L +D Sbjct: 241 WNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEIPADIPNVGEAALNKLD 300 Query: 878 ECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSG 937 E GI+ VGAEV GDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP+G G Sbjct: 301 EAGIVYVGAEVGAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKG 360 Query: 938 TVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 TV+DV++F R G++++ R++S+E+ Q++ + +D ++ I++ + RL L G A Sbjct: 361 TVIDVQVFTRDGVERDARALSIEKTQLDGIRKDLNEGFRIVEGATFERLRSALVGHKAEG 420 Query: 998 GPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKI 1057 G G KK + +++ QW++ + ++ + +E + + +L+D+F++K Sbjct: 421 G-AGLKKGQDFTDEVLDGLEHGQWFKLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKK 479 Query: 1058 EKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTP 1117 K+Q GDD+ PGVL++VKV++A++R IQ GDKMAGRHGNKG+VS I+P EDMP +GTP Sbjct: 480 RKLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTP 539 Query: 1118 VDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIG 1177 VD+VLNPLGVPSRMNVGQI ETHLG A GLG+KI +I + + ++ LR FL ++ Sbjct: 540 VDVVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMIEEQR---KVADLRKFLHEIYN 596 Query: 1178 T-GSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSIL 1236 G E++ + D +L +A+ + GVP++TPVFDGA E I +ML++ADL ESGQ L Sbjct: 597 EIGGRKEELDTFSDQEILDLAKNLRGGVPMATPVFDGAKESEIKAMLKLADLPESGQMQL 656 Query: 1237 YDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRL 1294 +DG TG F+RPVTVGY+YMLKLNH+V DK++ARSTGSYSLVTQQPLGGK+ GGQR Sbjct: 657 FDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 714 >gi|148985540|ref|ZP_01818729.1| DNA-directed RNA polymerase beta subunit [Streptococcus pneumoniae SP3-BS71] gi|148993179|ref|ZP_01822745.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae SP9-BS68] gi|149012450|ref|ZP_01833481.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae SP19-BS75] gi|149021911|ref|ZP_01835898.1| DNA-directed RNA polymerase beta subunit [Streptococcus pneumoniae SP23-BS72] gi|168489966|ref|ZP_02714165.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae SP195] gi|168494799|ref|ZP_02718942.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|221232687|ref|YP_002511841.1| DNA-directed RNA polymerase beta chain [Streptococcus pneumoniae ATCC 700669] gi|307128161|ref|YP_003880192.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae 670-6B] gi|254765308|sp|B8ZNW7|RPOB_STRPJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|147763506|gb|EDK70442.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae SP19-BS75] gi|147922260|gb|EDK73381.1| DNA-directed RNA polymerase beta subunit [Streptococcus pneumoniae SP3-BS71] gi|147928153|gb|EDK79171.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae SP9-BS68] gi|147929949|gb|EDK80937.1| DNA-directed RNA polymerase beta subunit [Streptococcus pneumoniae SP23-BS72] gi|183571598|gb|EDT92126.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae SP195] gi|183575332|gb|EDT95860.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|220675149|emb|CAR69733.1| DNA-directed RNA polymerase beta chain [Streptococcus pneumoniae ATCC 700669] gi|301800724|emb|CBW33372.1| DNA-directed RNA polymerase beta chain [Streptococcus pneumoniae OXC141] gi|306485223|gb|ADM92092.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae 670-6B] gi|332072043|gb|EGI82530.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae GA17570] gi|332072149|gb|EGI82635.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae GA41301] Length = 1203 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDITYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVVTEPVVLQKFKVIAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRV 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRVNGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|322391275|ref|ZP_08064746.1| DNA-directed RNA polymerase subunit beta [Streptococcus peroris ATCC 700780] gi|321145879|gb|EFX41269.1| DNA-directed RNA polymerase subunit beta [Streptococcus peroris ATCC 700780] Length = 1200 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 580/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRTLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +E G V+ +E I D+ + Sbjct: 278 YKINKKLNIKTRLLNQTIAEPLVDPETGEILVEKGTVMTRDVIESIEDHLDGDLNKIV-- 335 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 D + +L ++V+ P D Sbjct: 336 ----------YTPNDSAVLTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR I DI+A + ++L G G IDDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRTITPADILAEMSYFLNLAEGIGRIDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV KVTN++V+L+A EE+ +AQANS L+ DG+F E++V R Sbjct: 540 HLNIYGFIQTPYRKVDRATGKVTNEIVWLTADEEDEYTVAQANSKLNADGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPSSSVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTGME A SGAAI+A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PFVGTGMEYQAAHDSGAAIIAQYDGKVTYADADKVEVRREDGSLD-------VYHVQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 174/507 (34%), Positives = 246/507 (48%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLW--------- 997 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D E A +D ++I Sbjct: 998 ------------------------------------DTVKE---------AGMDSDAKTI 1012 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1013 LYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|149003618|ref|ZP_01828483.1| DNA-directed RNA polymerase beta subunit [Streptococcus pneumoniae SP14-BS69] gi|237650981|ref|ZP_04525233.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae CCRI 1974] gi|237821634|ref|ZP_04597479.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae CCRI 1974M2] gi|147758350|gb|EDK65350.1| DNA-directed RNA polymerase beta subunit [Streptococcus pneumoniae SP14-BS69] Length = 1203 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDITYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVVTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRV 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRVNGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIYIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|307708109|ref|ZP_07644577.1| DNA-directed RNA polymerase, beta subunit [Streptococcus mitis NCTC 12261] gi|307615894|gb|EFN95099.1| DNA-directed RNA polymerase, beta subunit [Streptococcus mitis NCTC 12261] Length = 1201 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVVTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRIVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDAVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDAVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|307710994|ref|ZP_07647416.1| DNA-directed RNA polymerase, beta subunit [Streptococcus mitis SK321] gi|307616956|gb|EFN96134.1| DNA-directed RNA polymerase, beta subunit [Streptococcus mitis SK321] Length = 1203 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVVTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRIVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|166030466|ref|ZP_02233295.1| hypothetical protein DORFOR_00127 [Dorea formicigenerans ATCC 27755] gi|166029718|gb|EDR48475.1| hypothetical protein DORFOR_00127 [Dorea formicigenerans ATCC 27755] Length = 1290 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 435/953 (45%), Positives = 592/953 (62%), Gaps = 56/953 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R + + E++ +P+LIEVQK SYD FL GL+ F+ + PIT +SG Sbjct: 13 KSSRMSYSRQKEVLQMPNLIEVQKDSYDWFL----------KSGLKEVFEDISPITDYSG 62 Query: 71 AAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQ 128 LE V + D K+ +D+C RD TYA PLK+ +RL K +I E Sbjct: 63 KLSLELVDFTLCEDDVKYSIDECRDRDATYAAPLKVRVRLH---------NKETDEINEH 113 Query: 129 SIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQ 188 I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++ + GK LY+ +IP++ Sbjct: 114 EIFMGDLPLMTRTGTFVINGAERVIVSQLVRSPGIYYAIAHDKL---GKKLYSSTVIPNR 170 Query: 189 GLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQRGDFW 245 G W++ E DS D+ +VR+DR RKVP+T + ALG+ + EI+ F KI+ S D Sbjct: 171 GAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGIGTNPEIIELFGEEPKIMASFEKDAA 230 Query: 246 CFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGITSDCL 303 + + +D+ E +I S L K + K K L + + + Sbjct: 231 TNYQEGLLELYKKIRPGEPLAVDSAESLITSMFFDPRRYDLAKVGRYKFNKKL-LLKNRI 289 Query: 304 CGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLV 363 G +AED V+ TGE+ EAG + + + I + + + I + N + N +V Sbjct: 290 SGHVLAEDAVSPITGEVIAEAGTKVTREIADRIQNGAVPYVWIDRPEEERNVKVLSNMMV 349 Query: 364 TDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD 423 + + D V E ++ + + + + +K ++ ++ Sbjct: 350 DL-------------KEVVDIDPEEVGVTELVYYPVLANLLEETAGDIDELKAAIKRDIH 396 Query: 424 TPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRME 483 +HI KEDI+A I + L G G DDID+LGNRR+R+VGE+L+NQYR+GL RME Sbjct: 397 -DLIPKHITKEDIMASINYNMHLEYGLGNDDDIDHLGNRRIRAVGELLQNQYRIGLSRME 455 Query: 484 RSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSA 543 R ++ER+++ D++ + PQ LIN KPV +AV EFF SSQLSQ + N L +TH RRLSA Sbjct: 456 RVVRERMTTQDLEGISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSA 515 Query: 544 LGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR 603 LG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL S+AR+N YGFIE PYR Sbjct: 516 LGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLASYARINEYGFIEAPYR 575 Query: 604 KV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPR 658 K+ + +VT++VVY++A EE+N ++AQAN +LDE+G F + V R E R Sbjct: 576 KIDHSDPENPRVTDEVVYMTADEEDNYHVAQANETLDEEGHFVHKNVSGRYREETQAYER 635 Query: 659 EKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESV 718 + D++D SPK V S+A +LIPFL+NDD+NR LMG NMQRQAVPLL EAP VGTGME Sbjct: 636 KAFDYMDVSPKMVFSVATALIPFLQNDDANRALMGSNMQRQAVPLLMTEAPVVGTGMEEK 695 Query: 719 VAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQ 778 A SG +VA+ AG+VE+ + I IR +G L Y+L KF RSNQ+ C NQ Sbjct: 696 AAVDSGVCVVAEEAGVVERSTSAEIQIRQDDGKLKK-------YKLTKFLRSNQSNCYNQ 748 Query: 779 RPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDV 838 R +V GD V + D+IADGPST G+LALG+N L+ FM W GYN+ED++L+SER+V +DV Sbjct: 749 RAIVFKGDRVEKGDVIADGPSTSNGELALGKNPLIGFMTWEGYNYEDAVLLSERLVQDDV 808 Query: 839 FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKI 898 +TSIHIEE+E ARDTKLGPEEITRDIP V ++ LKN+D+ GII VGAEV GDILVGK+ Sbjct: 809 YTSIHIEEYEAEARDTKLGPEEITRDIPGVGDDALKNLDDRGIIRVGAEVRAGDILVGKV 868 Query: 899 TPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G VVD ++F R D Sbjct: 869 TPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIVVDAKVFTRSNGD 921 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 255/1144 (22%), Positives = 422/1144 (36%), Gaps = 70/1144 (6%) Query: 267 IDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGD 326 I+ E+VI S + G+ ++ + +S + + Y+ Sbjct: 131 INGAERVIVSQLVRSPGIYYAIAHDKLGKKLYSSTVIPNRGAWLEYETDSNDVFYVRVDR 190 Query: 327 VIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDV 386 I I P + ++ I + D + ++ LL++Y+ +RPG+ Sbjct: 191 TRKVPITVLIRALGIGTNPEI-IELFGEEPKIMASFEKDAATNYQEGLLELYKKIRPGEP 249 Query: 387 STFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDL 446 AES+ +FFD +YDL+ VGR K N +L L + ++ + I Sbjct: 250 LAVDSAESLITSMFFDPRRYDLAKVGRYKFNKKLLLKNRISGHVLAEDAVSPIT------ 303 Query: 447 RNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINA 506 G+ + + + + ER++K + + + Sbjct: 304 --GEVIAEAGTKVTREIADRIQNGAVPYVWIDRPEEERNVKVLSNMMVDLKEVVDIDPEE 361 Query: 507 KPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHY 566 V V ++ L + ++ L R + L + + + Y Sbjct: 362 VGVTELVYYPVLANLLEETAGDIDELKAAI-KRDIHDLIPKHITKEDIMASINYNMHLEY 420 Query: 567 GRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRY 626 G + N + ++ + + R V + T D+ +S N Sbjct: 421 GLGNDDDIDHLGN-RRIRAVGELLQNQYRIGLSRMERVVRERMTTQDLEGISPQSLINIK 479 Query: 627 IAQANSS----------LDEDGSFTEELVFCRCAGEEIL----VPREKIDFIDASPKQVV 672 A + + EL R R + D Sbjct: 480 PVTAAVKEFFGSSQLSQFMDQNNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYG 539 Query: 673 SIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRA 732 + P N L + + + E+ + A Sbjct: 540 RMCPIETPEGPNIGLINSLASYARINEYGFIEAPYRKIDHSDPENPRVTDEVVYMTADEE 599 Query: 733 GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTC-VNQRPL--VKVGDEVR 789 A + + + SG ++R + V+ + + V Sbjct: 600 DNYHVAQANE-TLDEEGHFVHKNVSGRYREETQAYERKAFDYMDVSPKMVFSVATALIPF 658 Query: 790 RNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEF 847 + A+ +L+ P G E+ + +V+E+ Sbjct: 659 LQNDDANRALMGSNMQRQAVPLLMTEAPVVGTGMEEKAAVDSGVCVVAEEAGVVERSTSA 718 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E+ R G + + + ++ I+ G V GD++ + Sbjct: 719 EIQIRQD-DGKLKKYKLTKFLRSNQSNCYNQRAIVFKGDRVEKGDVIADGPSTSNGELAL 777 Query: 908 PEEKLLRAI--FGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVERE--- 962 + L+ + G D S R+ T + + + D + R+ Sbjct: 778 GKNPLIGFMTWEGYNYEDAVLLSERLVQDDVYTSIHIEEYEAEARDTKLGPEEITRDIPG 837 Query: 963 QIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWW 1022 + ++ DD I+ R +IL G+ G L + E R Sbjct: 838 VGDDALKNLDDR-GIIRVGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR---- 892 Query: 1023 QFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKR 1082 E + K+ GD+M PGV + V++++A KR Sbjct: 893 -------------EVRDTSLKVPHGEYGIVVDAKVFTRSNGDEMSPGVNQSVRIYIAQKR 939 Query: 1083 PIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLG 1142 I GDKMAGRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL Sbjct: 940 KISVGDKMAGRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLS 999 Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 A LG I + + D DI + + ++ + +++ Sbjct: 1000 LAAKALGFNISTPVFDGANEIDIMDTLDLANDYVNLSWEEFEKKHKEELLPEVLDYLYEN 1059 Query: 1203 GVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHM 1262 + + + G+ L DG TGE FD PVT+G+++ LKL+H+ Sbjct: 1060 --------------RDHRKLWKGVPISRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHL 1105 Query: 1263 VSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDV 1322 V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDV Sbjct: 1106 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDV 1165 Query: 1323 VGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +GR + YE+I+ G + E G PESF VL+KE+Q+LGL + + ME D + Sbjct: 1166 IGRVKTYEAIIKGENIPEPGIPESFKVLLKELQSLGLDVRVLRDDNTEVEIMET-SDMGE 1224 Query: 1383 CELK 1386 + Sbjct: 1225 TSFR 1228 >gi|315612444|ref|ZP_07887357.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis ATCC 49296] gi|315315425|gb|EFU63464.1| DNA-directed RNA polymerase subunit beta [Streptococcus sanguinis ATCC 49296] Length = 1203 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 422/963 (43%), Positives = 584/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTVMTRSVIE--------SIEHHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVLTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRVVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPAEVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQFDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 174/507 (34%), Positives = 246/507 (48%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLW--------- 997 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D E A +D ++I Sbjct: 998 ------------------------------------DTVKE---------AGMDSDAKTI 1012 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1013 LYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|331267074|ref|YP_004326704.1| DNA-dependent RNA Polymerase, beta subunit [Streptococcus oralis Uo5] gi|326683746|emb|CBZ01364.1| DNA-dependent RNA Polymerase, beta subunit [Streptococcus oralis Uo5] Length = 1203 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 422/963 (43%), Positives = 584/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTETMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTVMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVLTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRVVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPAEVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYGGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 174/507 (34%), Positives = 246/507 (48%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLW--------- 997 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D E A +D ++I Sbjct: 998 ------------------------------------DTVKE---------AGMDSDAKTI 1012 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1013 LYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|301794905|emb|CBW37366.1| DNA-directed RNA polymerase beta chain [Streptococcus pneumoniae INV104] Length = 1203 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 582/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDITYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVVTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLKEDGTFAEKIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRV 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRVNGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|322374982|ref|ZP_08049496.1| DNA-directed RNA polymerase, beta subunit [Streptococcus sp. C300] gi|321280482|gb|EFX57521.1| DNA-directed RNA polymerase, beta subunit [Streptococcus sp. C300] Length = 1203 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 422/963 (43%), Positives = 584/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTVMTRSVIE--------SIEHHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVLTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRVVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSHLNEDGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPAEVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 174/507 (34%), Positives = 246/507 (48%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLW--------- 997 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D E A +D ++I Sbjct: 998 ------------------------------------DTVKE---------AGMDSDAKTI 1012 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1013 LYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|293364291|ref|ZP_06611017.1| DNA-directed RNA polymerase subunit beta [Streptococcus oralis ATCC 35037] gi|307702743|ref|ZP_07639695.1| DNA-directed RNA polymerase, beta subunit [Streptococcus oralis ATCC 35037] gi|291317137|gb|EFE57564.1| DNA-directed RNA polymerase subunit beta [Streptococcus oralis ATCC 35037] gi|307623859|gb|EFO02844.1| DNA-directed RNA polymerase, beta subunit [Streptococcus oralis ATCC 35037] Length = 1203 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 422/963 (43%), Positives = 584/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ +E I Sbjct: 278 YKINKKLNVTTRLLNQTIAEPLVDPETGEILVEAGTVMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVLTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNTNPDDKVRVVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPAEVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 174/507 (34%), Positives = 246/507 (48%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLW--------- 997 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 D E A +D ++I Sbjct: 998 ------------------------------------DTVKE---------AGMDSDAKTI 1012 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1013 LYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|306828840|ref|ZP_07462032.1| DNA-directed RNA polymerase subunit beta [Streptococcus mitis ATCC 6249] gi|304429018|gb|EFM32106.1| DNA-directed RNA polymerase subunit beta [Streptococcus mitis ATCC 6249] Length = 1203 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 584/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTETMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I Sbjct: 278 YKINKKLNIKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVLTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRVVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P E +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPAEVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 239/507 (47%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|322377182|ref|ZP_08051674.1| DNA-directed RNA polymerase, beta subunit [Streptococcus sp. M334] gi|321281895|gb|EFX58903.1| DNA-directed RNA polymerase, beta subunit [Streptococcus sp. M334] Length = 1203 Score = 832 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I D+ Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIESIESYLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N YI N D +L ++V+ P D Sbjct: 332 --NKIVYIPN----DAAVVTDPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRIVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 166/507 (32%), Positives = 237/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A L I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLDIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|163813884|ref|ZP_02205278.1| hypothetical protein COPEUT_00037 [Coprococcus eutactus ATCC 27759] gi|158450754|gb|EDP27749.1| hypothetical protein COPEUT_00037 [Coprococcus eutactus ATCC 27759] Length = 1293 Score = 832 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 428/989 (43%), Positives = 605/989 (61%), Gaps = 73/989 (7%) Query: 9 GLGRV---------RKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAF 59 R+ R + K +++D+P+ IEVQK SY+ FL GL+ AF Sbjct: 2 EKNRISPVKSGKGYRMSYAKQKDVLDMPNFIEVQKNSYNWFLTD----------GLREAF 51 Query: 60 KSVFPITAFSGAAMLEFVSYEFDPP--KFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFT 117 + + PIT +SG LEFV ++F K+ +++C RD TYA PL++ +RL V D Sbjct: 52 RDISPITDYSGQYSLEFVDFQFCKNDLKYSIEECKERDATYAAPLRVKVRLRVKDAP--- 108 Query: 118 GAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGK 177 D+ E I+MGDLPLMT+ GTFVI G +R++VSQL RSPGI++D + GK Sbjct: 109 ------DMPEYEIFMGDLPLMTETGTFVINGAERVIVSQLVRSPGIYYDITHDKV---GK 159 Query: 178 LLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP-- 234 LYAC +IP++G W++ E DS D+ +VR+DR RKVPVT + ALG+ ++ EI+ F Sbjct: 160 KLYACTVIPNRGAWLEYETDSNDVFYVRVDRTRKVPVTVLIRALGLGTDQEIIDLFGEEP 219 Query: 235 KIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKG 292 KI+ S D + ++ E +I + L K + K Sbjct: 220 KIMESLNKDPAKSYSEGVVELYKKIRPDEPSVVENAESLINAMFFDARRYDLAKVGRYKF 279 Query: 293 VKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSV 352 K L + + G +AED ++ TGE+ EAG V+ E+ + I + +P + + + Sbjct: 280 NKKLAL-KARIAGHVLAEDAIDPSTGEVIAEAGTVVSEELADTIQDA---AVPYVMIQTE 335 Query: 353 NNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVG 412 N + + ++ + D + + E ++ + + Sbjct: 336 ERNVKVLSNMMVNIANYVD------------FDPAELGIVERVYYPVLEGLLEEYGDDTE 383 Query: 413 RVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLK 472 ++K + ++ + +HI KEDI A I + L G G DDID+LGNRR+R+VGE+L+ Sbjct: 384 KLKAAVERDM-SDLVPKHITKEDIFASINYNIHLEYGIGFDDDIDHLGNRRIRAVGELLQ 442 Query: 473 NQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSL 532 NQYR+GL R+ER ++ER+++ D +S+ PQ LIN KPV +AV EFF SSQLSQ + N L Sbjct: 443 NQYRIGLSRLERVVRERMTTQDAESITPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPL 502 Query: 533 SRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARV 592 S +TH RRLSALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL ++AR+ Sbjct: 503 SELTHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLINSLATYARI 562 Query: 593 NAYGFIETPYRKV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647 N YGF+E PYR++ + VT++VVYL+A EE+ + QAN +D DG F V Sbjct: 563 NEYGFVEAPYRRLDKTDPKNPVVTDEVVYLTADEEDRYRVVQANEPIDADGHFVRNNVSG 622 Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 R + P+ K+D +D SPK V S+A S+IPFL+NDD+NR LMG NMQRQAVPL+ E Sbjct: 623 RFRADTTEFPKSKVDLMDVSPKMVFSVATSMIPFLQNDDANRALMGSNMQRQAVPLMMTE 682 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 + VGTGME+ A SG +VAKR G+VE ++ I IR+ E D+Y ++KF Sbjct: 683 SAVVGTGMEAKAAVDSGVCVVAKRDGVVEYSNSTEICIRADE------DGKKDVYHVIKF 736 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 RSNQ C+NQRP+V GD V+ D+IADGPST G++ALG+N L+ FM W GYN+ED++ Sbjct: 737 ARSNQGNCMNQRPIVFKGDHVKAGDVIADGPSTSGGEIALGKNPLIGFMTWEGYNYEDAV 796 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887 L+SER+V +DV+TSIHIE++E ARDTKLG EEITRD+ +S + LK++DE GII +GAE Sbjct: 797 LLSERLVRDDVYTSIHIEKYECEARDTKLGKEEITRDLAGLSNDVLKDLDENGIIRIGAE 856 Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947 V GDILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G V+D ++F R Sbjct: 857 VRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAFGIVIDAKVFTR 916 Query: 948 -------HGIDKNERSISVEREQIELLAR 969 G+DK R ++ +I++ + Sbjct: 917 ADGDDLPAGVDKKVRVYIAQKRKIQVGDK 945 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 256/1133 (22%), Positives = 419/1133 (36%), Gaps = 83/1133 (7%) Query: 280 LTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHS 339 + + K + + + G ++ + + + + ++ + L Sbjct: 148 IYYDITHDKVGKKLYACTVIPNR--GAWLEYETDSNDVFYVRVDRTRKVPVTVLIRALGL 205 Query: 340 EIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL 399 I D I +L D K + ++++Y+ +RP + S AES+ N + Sbjct: 206 GTDQEII---DLFGEEPKIMESLNKDPAKSYSEGVVELYKKIRPDEPSVVENAESLINAM 262 Query: 400 FFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNL 459 FFD+ +YDL+ VGR K N +L L + ++ I G + Sbjct: 263 FFDARRYDLAKVGRYKFNKKLALKARIAGHVLAEDAIDPST----------GEVIAEAGT 312 Query: 460 GNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCS 519 + + + ER++K + + + +V V Sbjct: 313 VVSEELADTIQDAAVPYVMIQTEERNVKVLSNMMVNIANYVDFDPAELGIVERVYYPVLE 372 Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579 L + + L + R +S L + + + YG + N Sbjct: 373 GLLEEYGDDTEKL-KAAVERDMSDLVPKHITKEDIFASINYNIHLEYGIGFDDDIDHLGN 431 Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSS------ 633 + ++ + + R V + T D ++ N A Sbjct: 432 -RRIRAVGELLQNQYRIGLSRLERVVRERMTTQDAESITPQSLINIKPVTAAVKEFFGSS 490 Query: 634 ----LDEDGSFTEELVFCRCAGEEIL----VPREKIDFIDASPKQVVSIAASLIPFLEND 685 + + EL R R + D + P N Sbjct: 491 QLSQFMDQNNPLSELTHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNI 550 Query: 686 DSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVI 745 L + + T ++ V + A V A + Sbjct: 551 GLINSLATYARINEYGFVEAPYRRLDKTDPKNPVVTDEVVYLTADEEDRYRVVQANEPID 610 Query: 746 RSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPL--VKVGDEVRRNDIIADGPSTDLG 803 + + + V+ + + V + A+ Sbjct: 611 ADGHFVRNNVSGRFRADTTEFPKSKVDLMDVSPKMVFSVATSMIPFLQNDDANRALMGSN 670 Query: 804 DLALGRNMLVAFMPWHGYNFEDSMLISE--RMVSEDVFTSIHIEEFEVMARDTKLGPEEI 861 +++ G E + +V++ + E+ R + G +++ Sbjct: 671 MQRQAVPLMMTESAVVGTGMEAKAAVDSGVCVVAKRDGVVEYSNSTEICIRADEDGKKDV 730 Query: 862 TRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKA 921 I +++ I+ G V GD++ + G + + L + Sbjct: 731 YHVIKFARSNQGNCMNQRPIVFKGDHVKAGDVIADGPSTSG-GEIALGKNPLIGFMTWEG 789 Query: 922 VDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD--------- 972 + D L +S +V ++ I+K E + E + RD Sbjct: 790 YNYEDAVL-----LSERLVRDDVYTSIHIEKYECEARDTKLGKEEITRDLAGLSNDVLKD 844 Query: 973 -DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKV 1031 DE I+ R +IL G+ G L + E R Sbjct: 845 LDENGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR------------- 891 Query: 1032 QRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMA 1091 E + K+ GDD+P GV + V+V++A KR IQ GDKMA Sbjct: 892 ----EVRDTSLKVPHGAFGIVIDAKVFTRADGDDLPAGVDKKVRVYIAQKRKIQVGDKMA 947 Query: 1092 GRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKK 1151 GRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HLG A LG K Sbjct: 948 GRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLGLASQVLGFK 1007 Query: 1152 IKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVF 1211 + + + + DI G+ + + Y D V + Sbjct: 1008 VSTPVFNGATEFDIMDTLEMAND-YANGTWEDFEAKYKDTVKPEVMDFLY---------- 1056 Query: 1212 DGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARS 1271 + + ++ +G+ L DG TGE FD PVT+GY++ LKL+H+V DK++ARS Sbjct: 1057 ---KNRDHRAEWKGVPINRTGKVQLRDGRTGENFDAPVTIGYMHYLKLHHLVDDKIHARS 1113 Query: 1272 TGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYES 1331 TG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDV+GR + YE+ Sbjct: 1114 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVIGRVKTYEA 1173 Query: 1332 IVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIP-DFNKC 1383 I+ G + G PESF VL+KE QALGL + + + + D ++ Sbjct: 1174 IIKGENIPAPGVPESFKVLLKEFQALGLDVRVVREEDDEDGNKKMVEVDLSET 1226 >gi|164686520|ref|ZP_02210548.1| hypothetical protein CLOBAR_00087 [Clostridium bartlettii DSM 16795] gi|164604389|gb|EDQ97854.1| hypothetical protein CLOBAR_00087 [Clostridium bartlettii DSM 16795] Length = 1240 Score = 831 bits (2147), Expect = 0.0, Method: Composition-based stats. Identities = 438/955 (45%), Positives = 597/955 (62%), Gaps = 65/955 (6%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R R F K EI D+P+LIE+Q SY FL EGL+ F + PI ++G Sbjct: 9 KRKRMSFSKIKEIADLPNLIEIQVDSYKWFL----------EEGLKEVFNDISPIEDYTG 58 Query: 71 AAMLEFVSYEFD-PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +LEFV Y D PK+D+++C RD TY PLK+ +RLI K +IKEQ Sbjct: 59 NLILEFVDYSLDDKPKYDIEECKERDATYCAPLKVKVRLI---------NKETGEIKEQE 109 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 ++MGD PLMT GTFVI G +R++VSQL RSPG+++ ++ + GK L + +IP++G Sbjct: 110 VFMGDFPLMTDRGTFVINGAERVIVSQLVRSPGVYYALERDKT---GKKLISSTVIPNRG 166 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFP 248 W++ E DS D+I VR+DR RK PVT L ALG+ + EI+ + Sbjct: 167 AWLEYETDSNDVISVRVDRTRKQPVTVLLRALGIGTNAEIIELLGEDERLMATLEKDNTT 226 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITSD------ 301 L+ K + GE +ES L + L K + +G Sbjct: 227 NVEEGLVEIYK------KLRPGEPPTVESASSLINALFFDAKRYDLAKVGRYKFNKKLAL 280 Query: 302 --CLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 + +DI+N ETGE++++A + I +I +S I + I + Sbjct: 281 AYRIMNRVAYDDIINPETGEVFVKADEKISYDDAWKIQNSGINAVTIKTDEDRKVKVIGN 340 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMR 419 N + + D L+I + + L D+Y + + +R Sbjct: 341 NFVDIKAHIDFDIDDLNIKEKVH-------------YPTLKEILDEYSDEEEIKESIKIR 387 Query: 420 LNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL 479 + P +HI +DIIA I +L G G IDDID+LGNRR+RSVGE+L+NQ R+GL Sbjct: 388 IKELVP---KHILLDDIIASISYEFNLFFGIGNIDDIDHLGNRRIRSVGELLQNQVRIGL 444 Query: 480 LRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTR 539 RMER I+ER++ D++S+ PQ L+N +PV +A+ EFF SSQLSQ + N LS +TH R Sbjct: 445 SRMERVIRERMTVQDMESITPQALVNIRPVSAAIKEFFGSSQLSQFMDQTNPLSELTHKR 504 Query: 540 RLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIE 599 RLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+++A++N YGFIE Sbjct: 505 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYAKINEYGFIE 564 Query: 600 TPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR-CAGEEILV 656 +PYRK K+T+++ YL+A EE+ QAN L+ DGSF V CR G LV Sbjct: 565 SPYRKYDKETGKMTDEIHYLTADEEDLFIRVQANEPLNSDGSFVNSKVVCRTVNGAVELV 624 Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716 P E++DF+D SPKQVVSIA ++IPFLENDD+NR LMG NMQRQAVPL++ EAP +GTG+E Sbjct: 625 PTERVDFMDISPKQVVSIATAMIPFLENDDANRALMGANMQRQAVPLMRREAPIIGTGVE 684 Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776 AK SGA +VAK +GI E+V A IVI+ +G+ D Y+L+KF+RSN TC+ Sbjct: 685 YRAAKDSGAVVVAKNSGIAERVTADEIVIKREDGNRD-------RYKLLKFKRSNHGTCI 737 Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836 NQ P++ G+ ++ D+IADGP+TDLG++ALGRN L+AFM W GYN+ED++LI+ER+V E Sbjct: 738 NQTPIINKGEMIKAGDVIADGPATDLGEIALGRNCLIAFMTWEGYNYEDAVLINERLVKE 797 Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 D ++IHIEE+E ARDTKLGPEEIT+DIPNV E +KN+D+ GII +GAEV+ GDILVG Sbjct: 798 DRLSTIHIEEYECEARDTKLGPEEITKDIPNVGESAIKNLDDRGIIRIGAEVDSGDILVG 857 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 K+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G SG +VDV++F R D Sbjct: 858 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTRENGD 912 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 169/536 (31%), Positives = 247/536 (46%), Gaps = 69/536 (12%) Query: 853 DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKL 912 + G + + + I++ II G + GD++ + Sbjct: 714 KREDGNRDRYKLLKFKRSNHGTCINQTPIINKGEMIKAGDVIADGPATDL-GEIALGRNC 772 Query: 913 LRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKD 972 L A + + D L V + R+ H + + + E + +D Sbjct: 773 LIAFMTWEGYNYEDAVLIN----ERLVKEDRLSTIHIEEYECEARDT-KLGPEEITKDIP 827 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 + +N+ R I G SG K T ++ R F + +V+ Sbjct: 828 NVGESAIKNLDDR-GIIRIGAEVDSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVR 886 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + K+ + GDD+ PGV +V+ ++A KR I+ GDKMAG Sbjct: 887 DTSLKVPHGESGIIVDV------KVFTRENGDDLSPGVNELVRCYIAKKRKIKVGDKMAG 940 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG++SR+LP EDMPF++DGTP+DIVLNP G+PSRMN+GQ+ E HLG A LG + Sbjct: 941 RHGNKGVISRVLPEEDMPFMEDGTPMDIVLNPQGIPSRMNIGQVLEMHLGLAAKKLGWHV 1000 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D DI Sbjct: 1001 ATSVFDGAKETDIMDALEEAGYPRDGKLTL------------------------------ 1030 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G++ G+ FD +TVGY+Y LKL+H+V +K++ARST Sbjct: 1031 -----------------YDGRT-------GDTFDNRITVGYMYYLKLHHLVDEKLHARST 1066 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAA++LQE+LT+KSDDVVGR R YE+I Sbjct: 1067 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHILQEILTVKSDDVVGRVRTYEAI 1126 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKME--EIPDFNKCELK 1386 V G + E G PESF VL+KE+Q+L L + + + + E ++ D + Sbjct: 1127 VKGENIPEPGIPESFKVLIKELQSLCLDVKVLSEEDEELEVRESTDLDDEVDGNFE 1182 >gi|313884740|ref|ZP_07818495.1| DNA-directed RNA polymerase, beta subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312620001|gb|EFR31435.1| DNA-directed RNA polymerase, beta subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 1206 Score = 831 bits (2147), Expect = 0.0, Method: Composition-based stats. Identities = 421/961 (43%), Positives = 572/961 (59%), Gaps = 80/961 (8%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 +V G R+ + + E++++P+LIE+Q SY FL +EGLQ F + Sbjct: 4 HHIVKYGKKAERRSYSRIHEVLEMPNLIEIQTDSYQWFL----------DEGLQLMFDDI 53 Query: 63 FPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSI 122 PI S L FV Y K+DV++ D Y+ P+ +TLRLI K Sbjct: 54 SPIVDHSENLELHFVGYSLKEAKYDVNEARSHDANYSRPIYVTLRLI---------NKET 104 Query: 123 KDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYAC 182 ++KEQ ++ GD P+MT+ GTF+I G +R++VSQL RSP ++F R + + Sbjct: 105 GEVKEQEVFFGDFPMMTEMGTFIINGAERVIVSQLVRSPSVYFH---DRVDKKNRHTFTT 161 Query: 183 RIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQR 241 +IP++G W++ E D+K + + RIDR RK+P+T + ALG +S+E I+ F + Sbjct: 162 TVIPNRGAWLEFETDAKGVAYTRIDRTRKLPMTELIRALGFESDEEIIDIFTESDLLEAT 221 Query: 242 GDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS 300 D + AD + + + GE ES + L + + +G Sbjct: 222 LDKD-VHKNIADSRIEESLKDIYERLRPGEPKTAESSRNLLIARFFDPRRYDLAPVGRYK 280 Query: 301 --------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSV 352 L GL +AE++ + ETGEI G + ++ + +I ++ + Sbjct: 281 INKKLNLKYRLQGLTLAENLADPETGEIIFPEGTELTHDKMDTLIPYLENNINLVTLYPS 340 Query: 353 NNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVG 412 + + I +V P D Sbjct: 341 EEGVL------------GEPVDVQIIKVYSPRDP-------------------------- 362 Query: 413 RVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLK 472 +N+ N + DVR + DIIA + L G G DDID+LGNRR+RSVGE+L+ Sbjct: 363 EKVINIIGNGNITPDVRSLTPADIIASANYYLFLDYGIGVSDDIDHLGNRRIRSVGELLQ 422 Query: 473 NQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSL 532 NQ+R+GL RMER ++ER+S D S+ PQ LIN +PVV+A+ EFF SSQLSQ + N L Sbjct: 423 NQFRIGLSRMERVVRERMSLQDTSSMTPQQLINIRPVVAAIKEFFGSSQLSQFMDQSNPL 482 Query: 533 SRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARV 592 +TH RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L S+A++ Sbjct: 483 GELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLASYAKI 542 Query: 593 NAYGFIETPYRKVCD--GKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA 650 N YGFIETPYRKV K T+ + YL+A EE+ +AQANS L+EDGSF E V R Sbjct: 543 NEYGFIETPYRKVDKATHKPTDQIDYLTADEEDYYVVAQANSKLNEDGSFANETVMARYV 602 Query: 651 GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF 710 E + +P E++D++D SPKQVVS+A + IPFLENDDSNR LMG NMQRQAVPLLK APF Sbjct: 603 DENLEIPIERVDYMDVSPKQVVSVATASIPFLENDDSNRALMGANMQRQAVPLLKPHAPF 662 Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRS 770 VGTG+E A SGAA++ KR G V VDA + ++ +G +D Y L KF RS Sbjct: 663 VGTGIEYQAAHDSGAALLCKRDGQVIYVDANEVKVQLEDGSVDS-------YHLTKFARS 715 Query: 771 NQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS 830 N TC NQRPLV+ G++V + DI+ADGPS G+++LG+N LVAFM W GYN+ED++++S Sbjct: 716 NAGTCYNQRPLVRTGEQVEKGDILADGPSMQNGEMSLGQNPLVAFMTWDGYNYEDAIIMS 775 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 ER+V +DV+TSIHIEE+E ARDTKLGPEEITR+IPNVSE+ LK +D+ GII +GAEV Sbjct: 776 ERLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNVSEDALKYLDKDGIIAIGAEVRD 835 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+IF R Sbjct: 836 GDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTRENG 895 Query: 951 D 951 D Sbjct: 896 D 896 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 256/1087 (23%), Positives = 384/1087 (35%), Gaps = 151/1087 (13%) Query: 319 EIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIY 378 I + E F S+ I I + ++ + +++L DIY Sbjct: 184 RIDRTRKLPMTELIRALGFESDEEIIDIFTESDLLEATLDKDVHKNIADSRIEESLKDIY 243 Query: 379 RVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLD-------------TP 425 +RPG+ T + ++ FFD +YDL+ VGR K+N +LNL P Sbjct: 244 ERLRPGEPKTAESSRNLLIARFFDPRRYDLAPVGRYKINKKLNLKYRLQGLTLAENLADP 303 Query: 426 DDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGL-----L 480 + I E + L ++ L +GE + Q Sbjct: 304 ETGEIIFPEGTELTHDKMDTLIPYLENNINLVTLYPSEEGVLGEPVDVQIIKVYSPRDPE 363 Query: 481 RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR 540 ++ I + D+ S+ P D+I + + S + S + Sbjct: 364 KVINIIGNGNITPDVRSLTPADIIASANYYLFLDYGIGVSDDIDHLGNRRIRSVGELLQN 423 Query: 541 LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET 600 +G + R R+ +TS L++ A + + Sbjct: 424 QFRIGLSRMERVVRE------------RMSLQDTSSMTPQQLINIRPVVAAIKEFFGSSQ 471 Query: 601 PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK 660 + + ++ + L + Sbjct: 472 LSQFMDQSNPLGELTH---------------------KRRLSALGPGGLTRDRAGYEVRD 510 Query: 661 IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTG---MES 717 + + + L N+ ++ + + +A T + Sbjct: 511 VHYTHYGRMCPIETPEGPNIGLINNLASYAKINEYGFIETPYRKVDKATHKPTDQIDYLT 570 Query: 718 VVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVN 777 + A + A V+ + Y + Sbjct: 571 ADEEDYYVVAQANSKLNEDGSFANETVMARYVDENLEIPIERVDY---------MDVSPK 621 Query: 778 QRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSED 837 Q V + ++ +L P+ G E Sbjct: 622 QVVSVATASIPFLENDDSNRALMGANMQRQAVPLLKPHAPFVGTGIEYQAAHDSGAALLC 681 Query: 838 VFTSIHIEEFEVMAR-DTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896 I + + G + ++ ++ G +V GDIL Sbjct: 682 KRDGQVIYVDANEVKVQLEDGSVDSYHLTKFARSNAGTCYNQRPLVRTGEQVEKGDILAD 741 Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956 + M+ + L A + D + + K++ Sbjct: 742 GPS-MQNGEMSLGQNPLVAFMTWDGYNYEDAIIMS----------------ERLVKDDVY 784 Query: 957 ISVEREQIELLARDKDDEQVILDRNI----------YSRLMEILCGQNAVSGPKGFKKST 1006 S+ E+ E ARD + R I + I G G K T Sbjct: 785 TSIHIEEYESEARDTKLGPEEITREIPNVSEDALKYLDKDGIIAIGAEVRDGDILVGKVT 844 Query: 1007 VLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDM 1066 +S R F + +V+ + + KI + GD++ Sbjct: 845 PKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDV------KIFTRENGDEL 898 Query: 1067 PPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLG 1126 PGV +V+VF+ KR IQ GDKMAGRHGNKG+VS I+P EDMPFL DGTPVDI+LNPLG Sbjct: 899 SPGVNMLVRVFIVQKRKIQVGDKMAGRHGNKGVVSLIVPEEDMPFLPDGTPVDIMLNPLG 958 Query: 1127 VPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKIS 1186 VPSRMN+GQ+FE HLG A LG I + + D D Sbjct: 959 VPSRMNIGQVFELHLGMAARSLGINIATPVFDGANEND---------------------- 996 Query: 1187 DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFD 1246 V++ E + E ++ILYDG TGEPFD Sbjct: 997 -----------------------VWETVKEA---------GMAEDAKTILYDGRTGEPFD 1024 Query: 1247 RPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYG 1306 R V+VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYG Sbjct: 1025 RKVSVGVMYMMKLGHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1084 Query: 1307 AAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENS 1366 AAY LQE+LT KSDDVVGR + YE+IV G G PESF VLVKE+QALGL + + + Sbjct: 1085 AAYTLQEILTYKSDDVVGRVKTYEAIVKGEQIPRPGVPESFRVLVKELQALGLDLKVLDQ 1144 Query: 1367 RTKNSAK 1373 + Sbjct: 1145 DDQEIDL 1151 >gi|15901784|ref|NP_346388.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae TIGR4] gi|111658849|ref|ZP_01409470.1| hypothetical protein SpneT_02000020 [Streptococcus pneumoniae TIGR4] gi|149007435|ref|ZP_01831078.1| DNA-directed RNA polymerase beta subunit [Streptococcus pneumoniae SP18-BS74] gi|225855453|ref|YP_002736965.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae JJA] gi|41018113|sp|Q97NQ7|RPOB_STRPN RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|254765310|sp|C1CGP4|RPOB_STRZJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|14973467|gb|AAK76028.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae TIGR4] gi|147761007|gb|EDK67976.1| DNA-directed RNA polymerase beta subunit [Streptococcus pneumoniae SP18-BS74] gi|225722523|gb|ACO18376.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae JJA] gi|332071939|gb|EGI82427.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae GA17545] Length = 1203 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETSEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDITYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVVTEPVVLQKFKVIAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRV 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRVNGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|289168678|ref|YP_003446947.1| DNA-dependent RNA Polymerase, beta subunit [Streptococcus mitis B6] gi|288908245|emb|CBJ23087.1| DNA-dependent RNA Polymerase, beta subunit [Streptococcus mitis B6] Length = 1202 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 420/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTVMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVVTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS +++ RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSNKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPKA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDEQEVELRDLDEGMDE 1159 >gi|42518422|ref|NP_964352.1| DNA-directed RNA polymerase subunit beta [Lactobacillus johnsonii NCC 533] gi|81668275|sp|Q74L95|RPOB_LACJO RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|41582707|gb|AAS08318.1| DNA-directed RNA polymerase beta chain [Lactobacillus johnsonii NCC 533] Length = 1209 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 419/988 (42%), Positives = 593/988 (60%), Gaps = 86/988 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 M V G R R+ F + E++ +P+L +VQ SY FL NEG++ F Sbjct: 1 MLGHAVNYGSHRTRRSFSRIKEVLKLPNLTDVQTQSYKWFL----------NEGIREMFD 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI+ FSG LEFV Y+ PK+ +++ D Y+ PL +TL+L Sbjct: 51 DIMPISDFSGKLSLEFVDYKLLKPKYTLEEARDHDANYSAPLHVTLKLT---------NH 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ G+ PLMT GTFVI G +R++VSQL RSPG+++ D + +G+ ++ Sbjct: 102 ETGEIKTQDVFFGEFPLMTDSGTFVINGAERVIVSQLVRSPGVYYHSDFDK---NGRQIF 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+KD+ +VRIDR RK+P+T + ALG S+ EI F Sbjct: 159 GATVIPNRGAWLEYETDAKDLAYVRIDRTRKLPLTVLIRALGFGSDSEIADMFGESDSIR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + AD V + + GE +S + L + + +G Sbjct: 219 FTLEKDI-HKNPADSRVAEALKDIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L +AE + + +TGEI + GDV+ + L+++ Sbjct: 278 YKINKKLSLKNRLLRQTLAETLADPDTGEIIAKKGDVVTHELLDKL-------------- 323 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 + Y+ DR D + Y + G + + + + D ++ Sbjct: 324 ----SPYL----------DRDDFKMVTYEPSKEGVLPDPVTVQEIKVYSKVDPER----- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N DDV+H+ D++A I DL++ GT DDID+LGNRR+R VGE+ Sbjct: 365 ----VVKLMSNGHIADDVKHLTPADVLASINYFFDLQDNIGTTDDIDHLGNRRIRRVGEL 420 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S DI +V PQ LIN +PVV++V EFF SSQLSQ + N Sbjct: 421 LQNQFRIGLARMERVVRERMSIQDISTVTPQQLINIRPVVASVKEFFGSSQLSQFMDQNN 480 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RR+SALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL ++A Sbjct: 481 PLGELTHKRRMSALGPGGLSRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLATYA 540 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 VN YGFIETPYR+V KVT+ + YL+A E+N IA AN+ L+EDGSF +++V R Sbjct: 541 IVNKYGFIETPYRRVSWDTHKVTDKIDYLTADVEDNYIIAGANARLNEDGSFKDKIVLAR 600 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 + + V +KID++D PKQVVS+ ++ IPFLENDDSNR LMG N QRQAVPL+ A Sbjct: 601 HKEDNLEVTPDKIDYMDVIPKQVVSVTSACIPFLENDDSNRALMGANHQRQAVPLINPHA 660 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P VGTGME A SG A+VAK G+VE VDA I IR + LD Y L KF+ Sbjct: 661 PIVGTGMEYRAAHDSGDALVAKAPGVVEYVDANEIRIRRDDDTLDK-------YVLEKFR 713 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN NQ P VK G+ V +++IADGP+ + G+LALG+N ++AF+ W+ YN+ED+++ Sbjct: 714 RSNATKNYNQTPAVKQGERVVADEVIADGPAMENGELALGQNPIIAFLTWNMYNYEDAVM 773 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 ISERMV +DV+TSIHIE++E ARDTKLGPEEITR+IPNV E+ LK++DE GI+ +GAEV Sbjct: 774 ISERMVKDDVYTSIHIEDYESEARDTKLGPEEITREIPNVGEDALKDLDEEGIVRIGAEV 833 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR- 947 GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V +V++F R Sbjct: 834 QDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQNVQVFTRE 893 Query: 948 ------HGIDKNERSISVEREQIELLAR 969 G++K R V++ +I++ + Sbjct: 894 AGDELPPGVNKMVRVYIVQKRKIQVGDK 921 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 263/1082 (24%), Positives = 398/1082 (36%), Gaps = 179/1082 (16%) Query: 350 DSVNNNAYIRNTLVTDKNKDRK-----DALLDIYRVMRPGDVSTFSVAESMFNFLFFDSD 404 D + IR TL D +K+ +AL DIY +RPG+ T + S+ FFD Sbjct: 209 DMFGESDSIRFTLEKDIHKNPADSRVAEALKDIYERLRPGEPKTTDSSRSLLYARFFDPR 268 Query: 405 KYDLSTVGRVKMNMRLNLDTPDDVRHI--------------------RKEDIIAIIKILV 444 +YDL+ VGR K+N +L+L + + E + + L Sbjct: 269 RYDLAPVGRYKINKKLSLKNRLLRQTLAETLADPDTGEIIAKKGDVVTHELLDKLSPYLD 328 Query: 445 DLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQD-- 502 T + +V E +K ++ R+ + + + D+ + P D Sbjct: 329 RDDFKMVTYEPSKEGVLPDPVTVQE-IKVYSKVDPERVVKLMSNGHIADDVKHLTPADVL 387 Query: 503 --LINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRD 560 + + + L R A + V + ++ Sbjct: 388 ASINYFFDLQDNIGTTDDIDHLGNRRIRRVGELLQNQFRIGLARMERVVRERMSIQDIST 447 Query: 561 VHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYR----------------K 604 V P I P S G + N G + R + Sbjct: 448 VTPQQLINIRPVVASVKEFFGSSQLSQFMDQNNPLGELTHKRRMSALGPGGLSRDRAGYE 507 Query: 605 VCDGKVTNDVVYLSAMEEENRYIAQAN--SSLDEDGSFTEELVFCRCAGEEILVPREKID 662 V D T+ E I N ++ + R + +KID Sbjct: 508 VRDVHYTHYGRLCPIETPEGPNIGLINSLATYAIVNKYGFIETPYRRVSWDTHKVTDKID 567 Query: 663 FIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKS 722 ++ A + IA + E D S + + ++ + + + Sbjct: 568 YLTADVEDNYIIAGANARLNE-DGSFKDKIVLARHKEDNLEVTPDK-IDYMDVIPKQV-- 623 Query: 723 SGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLV 782 ++ + +E D+ R ++ + QR P+V Sbjct: 624 --VSVTSACIPFLENDDSNRALMGAN------------------HQRQAVPLINPHAPIV 663 Query: 783 KVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSI 842 G + + LVA P + + +E + D T Sbjct: 664 GTG--------------MEYRAAHDSGDALVAKAPG----VVEYVDANEIRIRRDDDTLD 705 Query: 843 HIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG--KITP 900 V+ + + + P V + DE +I G + G++ +G I Sbjct: 706 KY----VLEKFRRSNATKNYNQTPAVKQGERVVADE--VIADGPAMENGELALGQNPIIA 759 Query: 901 KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE 960 M E + DV S + D R E Sbjct: 760 FLTWNMYNYEDAVMISERMVKDDVY---------TSIHIEDYESEARDTKLGPEEITREI 810 Query: 961 REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ 1020 E +D D+E I+ + +IL G+ G L + E R Sbjct: 811 PNVGEDALKDLDEE-GIVRIGAEVQDGDILVGKVTPKGVTELSAEERLLHAIFGEKAR-- 867 Query: 1021 WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM 1080 + +V + ++ + GD++PPGV ++V+V++ Sbjct: 868 --EVRDTSLRVPHGGGGIVQNV-------------QVFTREAGDELPPGVNKMVRVYIVQ 912 Query: 1081 KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH 1140 KR IQ GDKM+GRHGNKG ++ + P EDMP+L DG PVDI LNP+GVPSRMN+GQ+ E H Sbjct: 913 KRKIQVGDKMSGRHGNKGTIALVCPEEDMPYLPDGRPVDICLNPMGVPSRMNIGQVLELH 972 Query: 1141 LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW 1200 LG A LG + + + D + D+ + Sbjct: 973 LGIAAKQLGIHVATPVFDGASEDDMWNM-------------------------------- 1000 Query: 1201 KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN 1260 E I G+++LYDG TGEPF V+VG +Y LKL Sbjct: 1001 -------------VREAGIGK---------DGKTVLYDGRTGEPFHNRVSVGIMYYLKLT 1038 Query: 1261 HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD 1320 HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSD Sbjct: 1039 HMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSD 1098 Query: 1321 DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF 1380 DVVGR + YE+IV G + G PESF VLVKE+Q+LGL I + + K + D Sbjct: 1099 DVVGRVKAYEAIVKGERIPKPGVPESFRVLVKELQSLGLDIKVLDMDHKEIELRDMDDDS 1158 Query: 1381 NK 1382 N Sbjct: 1159 ND 1160 >gi|315222771|ref|ZP_07864658.1| DNA-directed RNA polymerase, beta subunit [Streptococcus anginosus F0211] gi|315188134|gb|EFU21862.1| DNA-directed RNA polymerase, beta subunit [Streptococcus anginosus F0211] Length = 1188 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 579/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE K+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKESKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE +S + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ ++ I D+ Sbjct: 278 YKINKKLNIKTRLLNQTIAEPLVDPETGEILVEAGTVMTRSVIDSIAEYLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N YI N D +L ++V+ P D Sbjct: 332 --NKITYIPN----DAAVLTDPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D V I DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPGDRVHTITPADILAEMNYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L EDG F E +V R Sbjct: 540 HLNKYGFIQTPYRKVDRETGLVTNEIVWLTADEEDEFIVAQANSKLTEDGRFAEAIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 600 HQGNNQEFPSDQVDFMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAAI+A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAIIAQHDGKVVYSDAAKVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTSYNQRTLVKVGDTVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EEFE RDTKLGPEEITR+IPNV E+ L+++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDALRDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G +G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGAGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 365 bits (936), Expect = 4e-98, Method: Composition-based stats. Identities = 133/507 (26%), Positives = 205/507 (40%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDTVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEDALRDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGAGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A K R + D Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIA----------------QK----RKIRVGD------- 919 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 G K + P + ++ + Sbjct: 920 ---------------------------KMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIM 952 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + +++ + G+ ++TPVFDGA + + +R A +D ++I Sbjct: 953 LNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSDDLWDTVREAGMDSDAKTI 1012 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 LYDG TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1013 LYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR R YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLRAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGMDD 1159 >gi|291544240|emb|CBL17349.1| DNA-directed RNA polymerase subunit beta [Ruminococcus sp. 18P13] Length = 1291 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 417/959 (43%), Positives = 584/959 (60%), Gaps = 55/959 (5%) Query: 11 GRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSG 70 R FGK E++++P+LIEVQK SY F EGL+ F+ V IT ++G Sbjct: 13 KNTRMSFGKINEVLEMPNLIEVQKNSYKWF----------KEEGLKEVFRDVAAITDYNG 62 Query: 71 AAMLEFVSYEFDP-PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQS 129 +L FV Y+ D PK+ + +C RD+TYA PL++ L K D+KE Sbjct: 63 NLVLNFVDYKIDDTPKYTIAECKERDVTYAAPLRVKATL---------WNKETGDVKESE 113 Query: 130 IYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQG 189 I+MGD PLMT+ GTFVI G +R++VSQL RSPG+++ +K + GK L+ +IP++G Sbjct: 114 IFMGDFPLMTESGTFVINGAERVIVSQLVRSPGVYYAFEKDKT---GKDLFKATVIPNRG 170 Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEE-ILSTFYPKIVYSQRGDFWCFP 248 W++ E DS D+ +VRID+ RK+P+T+F+ ALG+ ++E I F Q Sbjct: 171 AWLEYEMDSNDVAYVRIDKNRKIPLTTFIRALGIGTDEEIAEMFGNDERLRQTILQKDGT 230 Query: 249 LSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGITS------- 300 + +D ++ + GE +ES + L K + G Sbjct: 231 KNNSDALIDV-----YKKLRPGEPPTVESAIQHLDNLFFDAKRYDLSRFGRYKYNKKLGI 285 Query: 301 -DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIR 359 L G ++ + N TGE+ +AGD + + EI + + + Y++ Y Sbjct: 286 GSRLVGHILSRPVANELTGELLADAGDRLSFEKAMEIEQAGVYE---AYLNVETKEYYTN 342 Query: 360 NTLVTDKNKDRKDALLDIYRVMRPG---DVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 T K+ + ++ D + + + S + Sbjct: 343 EQNETAIRMVEKEVKVIGNGMVDLSGYVDFDVLEYGINEKVSFKVLKEILESSADAQELE 402 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 +HI +DI A I +L G GT+DDID+LGNRR+RSVGE+L+NQ+R Sbjct: 403 EQVKKRADELVPKHIILDDIYATISYFCNLCEGVGTVDDIDHLGNRRIRSVGELLQNQFR 462 Query: 477 LGLLRMERSIKERISSV--DIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSR 534 +G RMER I+ER++ D+D + PQ L+N +P+ +A+ EFF SS LSQ + N L+ Sbjct: 463 IGFSRMERVIRERMNIQAQDMDVITPQALVNIRPITAAIKEFFGSSPLSQFMDQTNPLAE 522 Query: 535 ITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNA 594 +TH RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL+S L +FAR+N Sbjct: 523 LTHKRRLSALGSGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLISYLATFARINE 582 Query: 595 YGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGE 652 YGFIE PYRKV VT++VVY++A E+N +AQAN L E+G F + V CR + Sbjct: 583 YGFIEAPYRKVDKATGVVTDEVVYMTADVEDNFIVAQANEPLTEEGKFARQRVNCRYREK 642 Query: 653 EILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVG 712 + R+++D++D SPK VVS+A ++IPFLENDD+NR LMG NMQRQAVPLLK E PFVG Sbjct: 643 ILECDRDQVDYMDVSPKMVVSVATAMIPFLENDDANRALMGSNMQRQAVPLLKTERPFVG 702 Query: 713 TGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQ 772 TGME A SG IV G+VE V A ++++ +G Y+L KF+RSNQ Sbjct: 703 TGMEYKAAVDSGVCIVCNADGVVESVCADEVIVKQEDGTKQK-------YKLTKFKRSNQ 755 Query: 773 NTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISER 832 TC+NQRP+V VG+ V++ ++ADGP+T G+++LG+N L+ FM W GYN+ED++L++ER Sbjct: 756 GTCINQRPIVSVGEAVKKGQVLADGPATADGEISLGKNALIGFMTWEGYNYEDAVLLNER 815 Query: 833 MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGD 892 +V EDVFTS+HIEE+E+ RDTKLGPEEITRDIPNVS++ LK++DE GII +GAEV+ GD Sbjct: 816 LVREDVFTSVHIEEYEIECRDTKLGPEEITRDIPNVSDDALKDLDEKGIIRIGAEVHSGD 875 Query: 893 ILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 ILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRD SL+VP G +G +VDV+IF R D Sbjct: 876 ILVGKVTPKGETELTAEERLLRAIFGEKAREVRDNSLKVPHGEAGVIVDVKIFTRDNCD 934 Score = 357 bits (917), Expect = 6e-96, Method: Composition-based stats. Identities = 104/265 (39%), Positives = 139/265 (52%), Gaps = 30/265 (11%) Query: 1143 WACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKS 1202 G K + + P + L+ V+ +++ V Sbjct: 959 KMAGRHGNKGVVSRILPEEDMPFLPDGTPLDIVLNPLGVPSRMNIGQVLEVHLGMAAKAL 1018 Query: 1203 GVPVSTPVFDGADEEAINSMLRMAD------------------------------LDESG 1232 G + TPVFDGA E+ I + L A+ + E G Sbjct: 1019 GWHIMTPVFDGAHEDDIRACLNAANEKNKKIQAEATEQYFTLNTMDKVINPNALEMCEDG 1078 Query: 1233 QSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQ 1292 + LYDG TGE FD VTVGY+Y LKL+H+V DK++ARS G YSLVTQQPLGGK+ GGQ Sbjct: 1079 KFTLYDGRTGEKFDNRVTVGYMYYLKLHHLVDDKIHARSVGPYSLVTQQPLGGKAQFGGQ 1138 Query: 1293 RLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVK 1352 R GEMEVW ++AYGAAY LQE+LT+KSDD VGR YE+IV G + + G PESF VL+K Sbjct: 1139 RFGEMEVWALEAYGAAYTLQEILTVKSDDTVGRVNTYEAIVKGQNVPKPGIPESFKVLIK 1198 Query: 1353 EMQALGLSIDLENSRTKNSAKMEEI 1377 E+Q+LGL + + + + + Sbjct: 1199 ELQSLGLDVRVLDENQEEIDLKQNF 1223 >gi|319940287|ref|ZP_08014639.1| DNA-directed RNA polymerase subunit beta [Streptococcus anginosus 1_2_62CV] gi|319810589|gb|EFW06925.1| DNA-directed RNA polymerase subunit beta [Streptococcus anginosus 1_2_62CV] Length = 1188 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 421/963 (43%), Positives = 579/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE K+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKESKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE +S + L + +G Sbjct: 219 NTIEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTADSSRSLLVARFFDPHRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG V+ ++ I D+ Sbjct: 278 YKINKKLNIKTRLLNQTIAEPLVDPETGEILVEAGTVMTRNVIDSIAEYLDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N YI N D +L ++V+ P D Sbjct: 332 --NKITYIPN----DAAVLTDPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D V I DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPGDRVHTITPADILAEMNYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RLGL RMER+++ER+S D + + PQ +IN +PV +A+ EFF SSQLSQ + N Sbjct: 420 LANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VTN++V+L+A EE+ +AQANS L EDG F E +V R Sbjct: 540 HLNKYGFIQTPYRKVNRETGLVTNEIVWLTADEEDEFIVAQANSKLTEDGRFAEAIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +++DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ A Sbjct: 600 HQGNNQEFPSDQVDFMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAAI+A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAIIAQHDGKVVYSDAAKVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTSYNQRTLVKVGDTVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EEFE RDTKLGPEEITR+IPNV E+ L+++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDALRDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G +G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGAGVVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 168/507 (33%), Positives = 235/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + + M + + A + + D + V V Sbjct: 725 LVKVGDTVEKGDFIADGPS-MEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEFESETRDTKLGPEEITREIPNVGEDALRDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGGAGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRANGDELQSGVNMLVRVYIAQKRKIRVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHIATPVFDGASSDDLWETVREAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR R YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLRAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + Sbjct: 1133 SLGLDMRVLDEDDNEVELRDLDEGMDD 1159 >gi|255029117|ref|ZP_05301068.1| DNA-directed RNA polymerase subunit beta [Listeria monocytogenes LO28] Length = 1161 Score = 830 bits (2144), Expect = 0.0, Method: Composition-based stats. Identities = 441/944 (46%), Positives = 595/944 (63%), Gaps = 80/944 (8%) Query: 21 PEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYE 80 E++++P+LIE+Q ASY FL +EGL+ F+ + PI F+G LEF+ Y+ Sbjct: 1 SEVLELPNLIEIQTASYQWFL----------DEGLREMFRDISPIEDFAGNLSLEFIDYD 50 Query: 81 FDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTK 140 PK+ V++ RD YA PL++ LRLI K ++K+Q ++MGD PLMT+ Sbjct: 51 LGEPKYSVEESKNRDANYAAPLRVKLRLI---------NKETGEVKDQEVFMGDFPLMTE 101 Query: 141 DGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKD 200 GTF+I G +R++VSQL RSPG++F+ G+ +GK + +IP++G W++ E D+KD Sbjct: 102 MGTFIINGAERVIVSQLVRSPGVYFN---GKLDKNGKKGFGSTVIPNRGAWLEYETDAKD 158 Query: 201 IIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYSQRGDFWCFPLSAADLMVGAK 259 ++HVRIDR RK+PVT L ALG S+ EI+ + + L+ Sbjct: 159 VVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRNTLEKDNTDNAEKALL---- 214 Query: 260 VSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEK--------GVKFLGITSDCLCGLYVAE 310 + GE +++ + L K + + L +AE Sbjct: 215 --EIYERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRYKINKKLHLKNRLFNQTLAE 272 Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDR 370 +V+ ETGEI GD++D ++L++I + ++ N R TD + Sbjct: 273 TLVDPETGEIIASKGDILDRRNLDQI------------IPNLENGVGFRTLRPTDGVME- 319 Query: 371 KDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRH 430 L+ ++ P D ++N+ N ++V+H Sbjct: 320 DSVLVQSIKIYAPND--------------------------EEKEINIIGNAYIEENVKH 353 Query: 431 IRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERI 490 I DII+ I +L +G G DDID+LGNRR+RSVGE+L+NQ+R+GL RMER ++ER+ Sbjct: 354 ITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERM 413 Query: 491 SSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVA 550 S D+ ++ PQ LIN +PVV+++ EFF SSQLSQ + N L +TH RRLSALG GG+ Sbjct: 414 SIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLT 473 Query: 551 RARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKV--CDG 608 R RAG E+RDVH +HYGR+CP ET EG NIGL++SL+SFA+VN +GFIETPYR+V Sbjct: 474 RERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPETN 533 Query: 609 KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASP 668 +VT+ + YL+A EE+N +AQANS LDE G+FTEE V R E + V +E+ID++D SP Sbjct: 534 RVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARFRSENLAVEKERIDYMDVSP 593 Query: 669 KQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIV 728 KQVVS+A + IPFLENDDSNR LMG NMQRQAVPL+ EAPFVGTGME V AK SGAA+ Sbjct: 594 KQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEHVSAKDSGAAVT 653 Query: 729 AKRAGIVEQVDAIRIVIRSVE-GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDE 787 AK GIVE V+A I +R V D T G+D Y L KF RSNQ TC NQRP V GD Sbjct: 654 AKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCYNQRPNVAEGDR 713 Query: 788 VRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEF 847 V + +I+ +GPS D G+LALGRN+LVAFM W GYN+ED++++SER+V +DV+TSIHIEEF Sbjct: 714 VVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEF 773 Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E ARDTKLGPEE+TRDIPNV E+ L+++DE GII VGAEV D+LVGK+TPKG + +T Sbjct: 774 ESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLVGKVTPKGVTELT 833 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 EE+LL AIFGEKA +VRDTSLRVP G G V+DV+IF R D Sbjct: 834 AEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTREAGD 877 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 246/1044 (23%), Positives = 392/1044 (37%), Gaps = 106/1044 (10%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D + +N Y+RNTL D + + ALL+IY +RPG+ T A S+ FFD +YDL Sbjct: 188 IDLIGDNDYLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVDNARSLLVSRFFDPKRYDL 247 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 ++VGR K+N +L+L + + + LVD G+ D L R + + Sbjct: 248 ASVGRYKINKKLHLK--------NRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQII 299 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 L+N +G + + SV + S+ + + ++ + + + + Sbjct: 300 PNLEN--GVGFRTLRPTDGVMEDSVLVQSIKIYAPNDEEKEINIIGNAYIEENVKHITPS 357 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTS 588 S L +G +R V + + + S+ Sbjct: 358 DIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQD 417 Query: 589 FARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 + I R V + + + L Sbjct: 418 MTTITPQQLI--NIRPVVASIK----EFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGG 471 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAAS-LIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707 E + + + I + + S + + E Sbjct: 472 LTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPE 531 Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767 V ++ + A +VA+ + + E + S + Sbjct: 532 TNRVTDKIDYLTADEEDNYVVAQANSKL-----DEQGTFTEEEVMARFRSENLAVEKERI 586 Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827 + + + +D ++ A+ A G + Sbjct: 587 DYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEHVSAK 646 Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKL-------GPEEITRDIPNVSEEGLKNIDECG 880 + ++ H+E E+ R L G + V ++ Sbjct: 647 DSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCYNQRP 706 Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 + G V G+IL + + +L A + D + V Sbjct: 707 NVAEGDRVVKGEILGNGPS-MDSGELALGRNVLVAFMTWDGYNYEDAIIM----SERLVK 761 Query: 941 DVRIFNRHGIDKNERSISVE---REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVS 997 D + H + + + E + +D LD R+ + + + Sbjct: 762 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 821 Query: 998 GPKGFKKSTVLSSD--LISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K T L+++ L+ + + +V + Sbjct: 822 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIV-------------LDV 868 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI + GD++PPGV ++V+V++ KR I GDKMAGRHGNKG++SRILP EDMPF+ DG Sbjct: 869 KIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDG 928 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 929 TPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMA 988 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 T ++DG Sbjct: 989 RDAK----------------------------TILYDG---------------------- 998 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 +GE FD ++VG +YM+KL HMV DK++ARSTG YSLVTQQPLGGK+ GGQR G Sbjct: 999 ----RSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFG 1054 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGAAY LQE+LTIKSDDVVGR + YE+IV G E G PESF VL+KE+Q Sbjct: 1055 EMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQ 1114 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPD 1379 +LG+ + + ++ + + D Sbjct: 1115 SLGMDVKMLSADEEEIEMRDMDDD 1138 >gi|295425659|ref|ZP_06818346.1| DNA-directed RNA polymerase subunit beta [Lactobacillus amylolyticus DSM 11664] gi|295064675|gb|EFG55596.1| DNA-directed RNA polymerase subunit beta [Lactobacillus amylolyticus DSM 11664] Length = 1210 Score = 830 bits (2144), Expect = 0.0, Method: Composition-based stats. Identities = 404/963 (41%), Positives = 581/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + V+ G R R+ F K E++ +P+L +VQ SY FL ++G++ F Sbjct: 2 LNGHVLNYGKHRTRRSFSKIKEVLKLPNLTDVQTQSYKWFL----------DKGIKEVFD 51 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI FSG LE+V Y+ PK+ VD+ D TYA P+ +TL+L + Sbjct: 52 DIMPIGDFSGKLSLEYVGYKLQKPKYTVDEARDHDATYAAPMHVTLKLT---------NQ 102 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GDLPLMT+ G+F++ G +R++VSQL RSPG+++ D + +G+ + Sbjct: 103 ETGEIKTQDVFFGDLPLMTESGSFIVNGAERVIVSQLVRSPGVYYSGDFDK---NGRQTF 159 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+K++ +VR+DR RK+P+T + A+G+ S+ EIL F Sbjct: 160 GTTVIPNRGAWLEYETDAKNVSYVRVDRTRKLPLTVLIRAMGLGSDGEILDMFGQSDTLQ 219 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 D + AD V + + GE +S + L + + +G Sbjct: 220 FTLDKD-VHKNPADSRVAEALKDIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLATVGR 278 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L G +AE + + +TGEI + G V+ + ++++ Sbjct: 279 YKINKKLSLKNRLYGQTLAETLADPDTGEIIAKKGTVVTHEVMDKLEKYL---------- 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 DR D + Y+ + G +S + + + + ++ Sbjct: 329 ------------------DRDDFKMVTYQPSKEGVLSDPITVQEIKVYSKVNPERE---- 366 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N DV+H+ D+++ I L++ GT DDID+LGNRR+R VGE+ Sbjct: 367 -----VKLISNGHIGSDVKHLTPADVLSSINYFFALQDQIGTTDDIDHLGNRRIRRVGEL 421 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +P+V+++ EFF SSQLSQ + N Sbjct: 422 LQNQFRIGLARMERVVRERMSIQDPSTVTPQQLINIRPIVASIKEFFGSSQLSQFMDQHN 481 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL ++A Sbjct: 482 PLGELTHKRRMSALGPGGLTRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLATYA 541 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFIETPYR+V KVT+ + YL+A E+N IA AN+ L+EDGSF E+L+ R Sbjct: 542 IINKYGFIETPYRRVSWKTHKVTDKIDYLTADVEDNYIIAGANTPLNEDGSFKEKLILAR 601 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 + + V +KID++D PKQVVS+A++ IPFLENDDSNR LMG N QRQA PL+ Sbjct: 602 HKEDNVEVSPDKIDYMDVIPKQVVSVASACIPFLENDDSNRALMGANQQRQAAPLINPHG 661 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 VGTGME A SGAA++AK G VE VD I IR +G LD Y L K++ Sbjct: 662 SLVGTGMEYRAAHDSGAALLAKAPGTVEYVDGNEIRIRREDGTLDK-------YTLEKYR 714 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN + NQ P VK GD+V +DIIA+GP+ D G+LALG+N L+AFM W+ YN+ED+++ Sbjct: 715 RSNNSKSYNQTPNVKKGDKVDASDIIANGPAMDHGELALGQNPLIAFMTWNMYNYEDAIM 774 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSI IE++E ARDTKLGPEEITR+IPNV E+ LK++DE GI+ +GAEV Sbjct: 775 LSERLVKDDVYTSISIEDYESEARDTKLGPEEITREIPNVGEDALKDLDEDGIVRIGAEV 834 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 + GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+++ R Sbjct: 835 HDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKVYTRE 894 Query: 949 GID 951 D Sbjct: 895 AGD 897 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 176/532 (33%), Positives = 244/532 (45%), Gaps = 81/532 (15%) Query: 851 ARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEE 910 + + + PNV + +D II G ++ G++ +G Sbjct: 711 EKYRRSNNSKSYNQTPNVKKG--DKVDASDIIANGPAMDHGELALG-------QNPLIAF 761 Query: 911 KLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARD 970 E A+ + + ++ S ++ D R E E +D Sbjct: 762 MTWNMYNYEDAIMLSERLVKDDVYTSISIEDYESEARDTKLGPEEITREIPNVGEDALKD 821 Query: 971 KDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEK 1030 DE I+ +IL G+ G L + E R + Sbjct: 822 L-DEDGIVRIGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKAR-----------E 869 Query: 1031 VQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKM 1090 V+ + + K+ + GD++ PGV +V+V++A KR IQ GDKM Sbjct: 870 VRDTSLRVPHGGGGIVQDV------KVYTREAGDELSPGVNTMVRVYIAQKRKIQVGDKM 923 Query: 1091 AGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGK 1150 +GRHGNKG V+ ++P EDMP+L DGTPVDI LNP+GVPSRMN+GQ+ E HLG A LG Sbjct: 924 SGRHGNKGTVAAVVPEEDMPYLPDGTPVDICLNPMGVPSRMNIGQLLELHLGAAARQLGI 983 Query: 1151 KIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPV 1210 + + + D ++ +R A K G T + Sbjct: 984 HVATPVFDGANEDEVWNT-------------------------VRQAGVDKDG---KTVI 1015 Query: 1211 FDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYAR 1270 +DG +GEPF V+VG ++ LKL HMV DK++AR Sbjct: 1016 YDG--------------------------RSGEPFHNRVSVGVMHYLKLTHMVDDKIHAR 1049 Query: 1271 STGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYE 1330 S G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGAAY LQE+LT KSDDVVGR R YE Sbjct: 1050 SIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVRAYE 1109 Query: 1331 SIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +IV G + G PESF VLVKE+Q+LGL I + + + D N+ Sbjct: 1110 AIVKGERIPKPGVPESFRVLVKELQSLGLDIRVLDMNHNEIELRDMDDDSNE 1161 >gi|169833177|ref|YP_001695315.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae Hungary19A-6] gi|226699453|sp|B1I8R4|RPOB_STRPI RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta gi|168995679|gb|ACA36291.1| DNA-directed RNA polymerase, beta subunit [Streptococcus pneumoniae Hungary19A-6] Length = 1203 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 419/963 (43%), Positives = 582/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFL----------DHGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 51 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 159 GSTVIPNRGAWLELESDSKDITYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 219 NTVEKDI-HKNPMDSRTDEALKEIYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE +V+ ETGEI +EAG ++ +E I Sbjct: 278 YKINKKLNVKTRLLNQTIAEPLVDPETGEILVEAGTIMTRSVIE--------SIESHLDG 329 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 +N YI N D + +L ++V+ P D Sbjct: 330 DLNKIVYIPN----DAAVVTEPVVLQKFKVVAPTDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N + D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTIIGNANPDDKVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ RL L RMER+++ER+S D + + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQVRLELSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+S+ Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYG 539 Query: 591 RVNAYGFIETPYRKVCDGK--VTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGF++TPYRKV VTN++V+L+A EE+ +AQANS L+EDG+F E++V R Sbjct: 540 HLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G P +D++D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ +A Sbjct: 600 HQGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQA 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 P+VGTGME A SGAA++A+ G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLD-------VYHIQKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVKVGD V + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TS+H+EE+E RDTKLGPEEITR+IPNV E+ LK++DE GII +GAEV Sbjct: 773 MSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRV 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 238/507 (46%), Gaps = 77/507 (15%) Query: 881 IICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVV 940 ++ VG V GD + + M + + A + + D + V V Sbjct: 725 LVKVGDVVEKGDFIADGPS-MENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVY 783 Query: 941 DVRIFNRHGIDKNERSISVER--EQIELLARDKD---DEQVILDRNIYSRLMEILCGQNA 995 + + + + E +I + D DE I+ + +IL G+ Sbjct: 784 TSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVT 843 Query: 996 VSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKN 1055 G K L + + R +V+ + + + Sbjct: 844 PKGEKDLSAEERLLHAIFGDKSR-----------EVRDTSLRVPHGADGVVRDV------ 886 Query: 1056 KIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDG 1115 KI GD++ GV +V+V++A KR I+ GDKMAGRHGNKG+VSRI+P EDMP+L DG Sbjct: 887 KIFTRVNGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDG 946 Query: 1116 TPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKV 1175 TPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I + + D ++ D+ Sbjct: 947 TPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGM- 1005 Query: 1176 IGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235 + ++L G Sbjct: 1006 ----------------------------------------DSDAKTIL------YDG--- 1016 Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295 TGEPFD V+VG +YM+KL+HMV DK++ARS G YS VTQQPLGGK+ GGQR G Sbjct: 1017 ----RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFG 1072 Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355 EMEVW ++AYGA+ VLQE+LT KSDD+ GR + YE+I G + G PESF VLVKE+Q Sbjct: 1073 EMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQ 1132 Query: 1356 ALGLSIDLENSRTKNSAKMEEIPDFNK 1382 +LGL + + + + + ++ Sbjct: 1133 SLGLDMRVLDEDDQEVELRDLDEGMDE 1159 >gi|329117465|ref|ZP_08246182.1| DNA-directed RNA polymerase, beta subunit [Streptococcus parauberis NCFD 2020] gi|326907870|gb|EGE54784.1| DNA-directed RNA polymerase, beta subunit [Streptococcus parauberis NCFD 2020] Length = 1192 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 419/963 (43%), Positives = 588/963 (61%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 MA V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 1 MAGHEVRYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQEFL----------DAGLKEVFE 50 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YEF PK+ +++ D +Y+ P+ +T RL+ K Sbjct: 51 DVLPISNFTDTMELEFVGYEFKEPKYTLEEARIHDASYSAPIFVTFRLV---------NK 101 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 102 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKIGY 158 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E D+KDI + RIDR RK+P T+ + ALG +EI+ F + Sbjct: 159 GSTVIPNRGAWLELETDAKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGESDLVR 218 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + +D + + GE +S + L + + +G Sbjct: 219 NTIEKDI-HKNPSDSRTDEALKEIYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGR 277 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 L +AE++++ ETGEI +E+G V+ + +E I D+ Sbjct: 278 YKVNKKLNIKTRLLNQTIAENLIDAETGEILVESGTVMTREVIESIEEHIDGDL------ 331 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 N AY N D + +L ++V+ P D Sbjct: 332 --NKFAYTPN----DYAVVTEPVILQKFKVVSPIDPDRV--------------------- 364 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N D VR + DI+A + ++L G G +DDID+LGNRR+R+VGE+ Sbjct: 365 -----VTLIGNAAPDDKVRALTPADILAEMSYFLNLSEGIGKVDDIDHLGNRRIRAVGEL 419 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L NQ+R+GL RMER+++ER+S D D + PQ +IN +PV +AV EFF SSQLSQ + N Sbjct: 420 LANQFRIGLARMERNVRERMSVQDNDVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHN 479 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 LS ++H RRLSALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL+++L+SF Sbjct: 480 PLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFG 539 Query: 591 RVNAYGFIETPYRKVCDG--KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFI+TPYRKV VT+++V+L+A EE+ +AQANS L+EDG+F EE+V R Sbjct: 540 HLNKYGFIQTPYRKVDRSTGIVTSEIVWLTADEEDEFTVAQANSKLNEDGTFAEEIVMGR 599 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 G +DF+D SPKQVV++A + IPFLENDDSNR LMG NMQRQAVPL+ ++ Sbjct: 600 HQGNNQEFSASIVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPKS 659 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 PFVGTGME A SGAA++A+ +G V DA ++ +R +G LD +Y + KF+ Sbjct: 660 PFVGTGMEYQAAHDSGAAVIAQYSGKVVFSDAEKVEVRREDGSLD-------VYHITKFR 712 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN T NQR LVK GD + + D IADGPS + G++ALG+N +VA+M W GYNFED+++ Sbjct: 713 RSNSGTAYNQRTLVKAGDIIEKGDFIADGPSMENGEMALGQNPVVAYMTWEGYNFEDAVI 772 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V EDV+TS+H+EEFE RDTKLGPEEITR++PNV EE L+++DE GII +GAEV Sbjct: 773 MSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREVPNVGEEALRDLDEMGIIRIGAEV 832 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 GDILVGK+TPKGE ++ EE+LL AIFG+K+ +VRDTSLRVP G G V DV+IF R Sbjct: 833 KEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGIVRDVKIFTRA 892 Query: 949 GID 951 D Sbjct: 893 NGD 895 Score = 476 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 176/590 (29%), Positives = 250/590 (42%), Gaps = 80/590 (13%) Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLI-SERMVSEDVFTSIHIEEFEVMARDTKLGP 858 ++ P+ G E S V + + E + + G Sbjct: 643 MGANMQRQAVPLINPKSPFVGTGMEYQAAHDSGAAVIAQYSGKVVFSDAEKVEVRREDGS 702 Query: 859 EEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFG 918 ++ ++ ++ G + GD + + M + + A Sbjct: 703 LDVYHITKFRRSNSGTAYNQRTLVKAGDIIEKGDFIADGPS-MENGEMALGQNPVVAYMT 761 Query: 919 EKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVER------EQIELLARDKD 972 + + D + V V + + + E E RD Sbjct: 762 WEGYNFEDAVIMSERLVKEDVYTSVHLEEFESETRDTKLGPEEITREVPNVGEEALRDL- 820 Query: 973 DEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQ 1032 DE I+ + +IL G+ G K L + + R +V+ Sbjct: 821 DEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSR-----------EVR 869 Query: 1033 RNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAG 1092 + + + KI GD++ GV +V+V++A KR I+ GDKMAG Sbjct: 870 DTSLRVPHGGDGIVRDV------KIFTRANGDELQSGVNMLVRVYIAQKRKIKVGDKMAG 923 Query: 1093 RHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKI 1152 RHGNKG+VSRI+P EDMP+L DGTPVDI+LNPLGVPSRMN+GQ+ E HLG A LG I Sbjct: 924 RHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARNLGIHI 983 Query: 1153 KSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFD 1212 + + D D+ T ++D Sbjct: 984 ATPVFDGATADDLWETVIEAGMDSDAK----------------------------TVLYD 1015 Query: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARST 1272 G TGEPFD V+VG +YM+KL+HMV DK++ARS Sbjct: 1016 G--------------------------RTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSV 1049 Query: 1273 GSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESI 1332 G YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+ VLQE+LT KSDDV GR + YE+I Sbjct: 1050 GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAI 1109 Query: 1333 VAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNK 1382 G + G PESF VLVKE+Q+LGL + + + + + Sbjct: 1110 TKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDDNEVELRDLDEGEDD 1159 >gi|323483088|ref|ZP_08088481.1| DNA-directed RNA polymerase [Clostridium symbiosum WAL-14163] gi|323403628|gb|EGA95933.1| DNA-directed RNA polymerase [Clostridium symbiosum WAL-14163] Length = 1284 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 437/961 (45%), Positives = 596/961 (62%), Gaps = 59/961 (6%) Query: 3 KGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSV 62 V G G VR F + E++++P+LIE+QK SY FL +EGL+ F + Sbjct: 1 MRPVKAGKG-VRMTFSRQKEVLEMPNLIEIQKNSYQWFL----------DEGLREVFADI 49 Query: 63 FPITAFSGAAMLEFVSYEF--DPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 PI F+G L+FV + D K+ +++C RD TYA PLK+ +RL D D Sbjct: 50 SPIADFAGHLSLDFVDFTLCKDDIKYTIEECKERDATYAAPLKVKVRLCNKDKD------ 103 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +I E I+MGDLPLMT G+FVI G +R++VSQL RSPGI++ + G LY Sbjct: 104 ---EINEHEIFMGDLPLMTDTGSFVINGAERVIVSQLVRSPGIYYGIAHDKI---GTELY 157 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVY- 238 +C +IP++G W++ E DS DI +VR+DR RKVPVT + ALG + EI+ F ++ Sbjct: 158 SCTVIPNRGAWLEYETDSNDIFYVRVDRTRKVPVTVLIRALGYGTNAEIIELFGEELKLE 217 Query: 239 -SQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKF 295 S D + + +D+ E ++ S L K + K K Sbjct: 218 KSFEKDPSSNYQDGLLELYKKIRPGEPLSVDSAESLLNSMFFDPRRYDLAKVGRYKFNKK 277 Query: 296 LGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNN 355 L + + G +AED+V+ TGEI E G +D++ +I ++ IP +++ N Sbjct: 278 L-HFKNRIAGHTLAEDVVDMSTGEILAEKGTEVDKQLATDIQNA---AIPYVWIQGERKN 333 Query: 356 AYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVK 415 + + ++ D L Y P +V + + + + + +K Sbjct: 334 HKVLSNMMVD---------LASYVDFDPEEV----GVTELVYYPVLEGILAEAGSDEELK 380 Query: 416 MNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQY 475 ++ ++ +HI KEDIIA I + L G GT DDID+LGNRR+R+VGE+L+NQY Sbjct: 381 EVIKRDIH-DLIPKHITKEDIIASINYNMHLEGGIGTQDDIDHLGNRRIRAVGELLQNQY 439 Query: 476 RLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRI 535 R+GL RMER ++ER+++ D++ V Q LIN KPV +AV EFF SSQLSQ + N L+ + Sbjct: 440 RIGLSRMERVVRERMTTQDMEGVSAQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLAEL 499 Query: 536 THTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAY 595 TH RRLSALG GG++R RAG E+RDVH THYGR+CP ET EG NIGL++SL ++ARVN Y Sbjct: 500 THKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLINSLATYARVNQY 559 Query: 596 GFIETPYRKVC-----DGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCA 650 GF+E PYR V + VT +VVYL+A EE+N +AQAN LD++G F V R Sbjct: 560 GFVEAPYRVVDKSDPHNPVVTEEVVYLTADEEDNFVVAQANEPLDDEGHFIHNNVSGRFR 619 Query: 651 GEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPF 710 E +++ID +D SPK V S+A S+IPFLENDD+NR LMG NMQRQAVPLLK EA Sbjct: 620 EETSEFQKKRIDLMDVSPKMVFSVATSMIPFLENDDANRALMGSNMQRQAVPLLKTEAAV 679 Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRS 770 VGTG+E A SG +VAK AG+VE+ + I+I+ S D+Y L KF+RS Sbjct: 680 VGTGIEGKAAVDSGVCMVAKNAGVVERSASNEIIIKRD------SDGNRDVYHLTKFKRS 733 Query: 771 NQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLIS 830 NQ+ C NQ+P+V GD V ++IADGPSTD G++ALG+N L+ FM W GYN+ED++L+S Sbjct: 734 NQSNCYNQKPIVYKGDHVEVGEVIADGPSTDNGEIALGKNPLIGFMTWEGYNYEDAVLLS 793 Query: 831 ERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNP 890 ER+V EDV+TS+HIEE+E ARDTKLGPEEITRD+P V E+ LK++DE GII +GAEV Sbjct: 794 ERLVQEDVYTSVHIEEYEAEARDTKLGPEEITRDVPGVGEDALKDLDERGIIRIGAEVRA 853 Query: 891 GDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGI 950 GDILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G +VD ++F R Sbjct: 854 GDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGAYGIIVDAKVFTRENG 913 Query: 951 D 951 D Sbjct: 914 D 914 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 180/545 (33%), Positives = 257/545 (47%), Gaps = 40/545 (7%) Query: 848 EVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMT 907 E++ + G ++ ++ I+ G V G+++ + + Sbjct: 711 EIIIKRDSDGNRDVYHLTKFKRSNQSNCYNQKPIVYKGDHVEVGEVIADGPSTDN-GEIA 769 Query: 908 PEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI--- 964 + L + + D L V V + + + + E Sbjct: 770 LGKNPLIGFMTWEGYNYEDAVLLSERLVQEDVYTSVHIEEYEAEARDTKLGPEEITRDVP 829 Query: 965 ---ELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQW 1021 E +D DE+ I+ R +IL G+ G L + E R Sbjct: 830 GVGEDALKDL-DERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAR--- 885 Query: 1022 WQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMK 1081 E + K+ + GD++ PGV V++++A K Sbjct: 886 --------------EVRDTSLKVPHGAYGIIVDAKVFTRENGDELSPGVNETVRIYIAQK 931 Query: 1082 RPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141 R I GDKMAGRHGNKG+VSR+LP EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL Sbjct: 932 RKISVGDKMAGRHGNKGVVSRVLPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHL 991 Query: 1142 GWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWK 1201 A LG + + I D DI S E Y D + ++ E Sbjct: 992 SLAARALGFNVSTPIFDGANEIDIQDTLELAND-YVNTSWEEFEEKYRDKADPKLMEYLG 1050 Query: 1202 SGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 ++ + L G+ L DG TGE FD PVT+G+++ LKL+H Sbjct: 1051 -------------SHLEHRALWKGVPLGRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHH 1097 Query: 1262 MVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDD 1321 +V DK++ARSTG YSLVTQQPLGGK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDD Sbjct: 1098 LVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDD 1157 Query: 1322 VVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFN 1381 VVGR + YE+I+ G + E G PESF VL+KE+Q+LGL + + E I D+ Sbjct: 1158 VVGRVKTYEAIIKGENIPEPGIPESFKVLLKELQSLGLDVRVLKEDGSEVELAETI-DYG 1216 Query: 1382 KCELK 1386 +++ Sbjct: 1217 DTDIR 1221 >gi|253579269|ref|ZP_04856539.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849367|gb|EES77327.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1286 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 427/960 (44%), Positives = 592/960 (61%), Gaps = 61/960 (6%) Query: 6 VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65 V G +R + + E++++P+LIEVQ+ SY FL +EGL+ F + PI Sbjct: 9 VKTG-KSMRMSYQRQEEVLEMPNLIEVQRDSYKWFL----------DEGLREVFDDISPI 57 Query: 66 TAFSGAAMLEFVSYEFDP--PKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIK 123 +SG LEF+ + FD K+ ++ C RD TYA PLK+ +RLI K + Sbjct: 58 ADYSGKLSLEFIDFTFDEKDAKYTIEQCKERDATYAAPLKVRVRLI---------NKETE 108 Query: 124 DIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACR 183 +I E I+MGDLP+MT GTFVI G +R++VSQL RSPGI++ + GK L++ Sbjct: 109 EINEHEIFMGDLPIMTVTGTFVINGAERVIVSQLVRSPGIYYAIAHDKL---GKRLFSST 165 Query: 184 IIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYP--KIVYSQ 240 +IP++G W++ E DS D+ +VR+DR RKVP+T + ALG+ S EI+ F KI+ S Sbjct: 166 VIPNRGAWLEYETDSNDVFYVRVDRTRKVPITVLIRALGVGSNAEIIDLFGEEPKILASF 225 Query: 241 RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSG--LLKSLKEKGVKFLGI 298 D + + +++ E +I + L K + K K L Sbjct: 226 TKDTSTNYQEGLLELYKKIRPGEPLAVESAESLINAMFFDPRRYDLAKVGRYKFNKKL-H 284 Query: 299 TSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYI 358 + + G +AED+V+ TGEI E G V+ ++ I +S + Y+ Sbjct: 285 LNRRIVGHRLAEDVVDASTGEILAEEGTVVTKEMANTIQNSAV--------------PYV 330 Query: 359 RNTLVTDKNKDRKDALLDIYRVMRPG--DVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416 D+ L+ R P D + V E+++ + + + + + R+ Sbjct: 331 WILGEEDRRIKVLSNLMVDIRHYLPEIEDPKSIGVTEAVYYPVLENILEENDTLEDRIAA 390 Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYR 476 R D +HI KEDI A I + L G G DDID+LGNRR+R+VGE+L+NQYR Sbjct: 391 IHRDIHDLI--PKHITKEDIFASINYNMHLEYGLGNADDIDHLGNRRIRAVGELLQNQYR 448 Query: 477 LGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536 +GL R+ER ++ER+++ D +++ PQ LIN KPV +AV EFF SSQLSQ + N L +T Sbjct: 449 IGLSRLERVVRERMTTQDTENISPQSLINIKPVTAAVKEFFGSSQLSQFMDQNNPLGELT 508 Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596 H RRLSALG GG++R RAG E+RDVH +HYGR+CP ET EG NIGL++SL S+AR+N YG Sbjct: 509 HKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPVETPEGPNIGLINSLASYARINQYG 568 Query: 597 FIETPYRKV-----CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAG 651 FIE PYRK+ + +VT++VVY++A EE+N ++AQAN LDE+G F + V R Sbjct: 569 FIEAPYRKIDKSDPKNPRVTDEVVYMTADEEDNYHVAQANEPLDEEGYFIHKNVSGRFRE 628 Query: 652 EEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFV 711 E R D++D SP+ V S+A +LIPFL+NDD+NR LMG NMQRQAVPLL EAP V Sbjct: 629 ETQEYERHMFDYMDVSPRMVFSVATALIPFLQNDDANRALMGSNMQRQAVPLLTTEAPVV 688 Query: 712 GTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSN 771 GTGME A SG +VAK++G V + + I I++ +G D Y L K+ RSN Sbjct: 689 GTGMEVKTAVDSGVCVVAKKSGTVLRSTSTDISIKNDDGTKDD-------YHLTKYLRSN 741 Query: 772 QNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISE 831 Q+ C NQ+P+V G+ V +IADGPST G+LALG+N L+ FM W GYN+ED++L+SE Sbjct: 742 QSNCYNQKPIVFQGEHVEAGQVIADGPSTANGELALGKNPLIGFMTWEGYNYEDAVLLSE 801 Query: 832 RMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPG 891 R+V +DV+TS+HIEE+E ARDTKLGPEEITRD+P V ++ LK++DE GII +GAEV G Sbjct: 802 RLVMDDVYTSVHIEEYECEARDTKLGPEEITRDVPGVGDDALKDLDERGIIRIGAEVRAG 861 Query: 892 DILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGID 951 DILVGK+TPKGE+ +T EE+LLRAIFGEKA +VRDTSL+VP G G +VD ++F R D Sbjct: 862 DILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGEYGIIVDAKVFTRENGD 921 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 254/1062 (23%), Positives = 405/1062 (38%), Gaps = 68/1062 (6%) Query: 349 VDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDL 408 +D I + D + + ++ LL++Y+ +RPG+ AES+ N +FFD +YDL Sbjct: 212 IDLFGEEPKILASFTKDTSTNYQEGLLELYKKIRPGEPLAVESAESLINAMFFDPRRYDL 271 Query: 409 STVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVG 468 + VGR K N +L+L+ + ++ + A ++ G ++ N Sbjct: 272 AKVGRYKFNKKLHLNRRIVGHRLAEDVVDASTGEILA-EEGTVVTKEMANTIQNSAVPYV 330 Query: 469 EMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEH 528 +L + R +++ ++ I + P+ + + V V E + + Sbjct: 331 WILGEEDR--RIKVLSNLMVDIRHYLPEIEDPKSIGVTEAVYYPVLENILEENDTLEDRI 388 Query: 529 VNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTH-YGRICPAETSEGHNIGLVSSLT 587 I + A +H + G + I V L Sbjct: 389 AAIHRDIHDLIPKHITKEDIFASINYN-----MHLEYGLGNADDIDHLGNRRIRAVGELL 443 Query: 588 SFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSS----------LDED 637 + + R V + T D +S N A + Sbjct: 444 ---QNQYRIGLSRLERVVRERMTTQDTENISPQSLINIKPVTAAVKEFFGSSQLSQFMDQ 500 Query: 638 GSFTEELVFCRCAGEEIL----VPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMG 693 + EL R R + D + P N L Sbjct: 501 NNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPVETPEGPNIGLINSLAS 560 Query: 694 CNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLD 753 Q + + ++ + A A + + Sbjct: 561 YARINQYGFIEAPYRKIDKSDPKNPRVTDEVVYMTADEEDNYHVAQANE-PLDEEGYFIH 619 Query: 754 PSTSGVDIYRLMKFQRSNQNTC-VNQRPL--VKVGDEVRRNDIIADGPSTDLGDLALGRN 810 + SG +++R + V+ R + V + A+ Sbjct: 620 KNVSGRFREETQEYERHMFDYMDVSPRMVFSVATALIPFLQNDDANRALMGSNMQRQAVP 679 Query: 811 MLVAFMPWHGYNFEDSMLISER-MVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVS 869 +L P G E + V ++ ++ G ++ + Sbjct: 680 LLTTEAPVVGTGMEVKTAVDSGVCVVAKKSGTVLRSTSTDISIKNDDGTKDDYHLTKYLR 739 Query: 870 EEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAI--FGEKAVDVRDT 927 ++ I+ G V G ++ + + L+ + G D Sbjct: 740 SNQSNCYNQKPIVFQGEHVEAGQVIADGPSTANGELALGKNPLIGFMTWEGYNYEDAVLL 799 Query: 928 SLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQ---IELLARDKDDEQVILDRNIYS 984 S R+ T V + + D + R+ + +D DE+ I+ Sbjct: 800 SERLVMDDVYTSVHIEEYECEARDTKLGPEEITRDVPGVGDDALKDL-DERGIIRIGAEV 858 Query: 985 RLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYET 1044 R +IL G+ G L + E R E + Sbjct: 859 RAGDILVGKVTPKGETELTAEERLLRAIFGEKAR-----------------EVRDTSLKV 901 Query: 1045 SKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRIL 1104 K+ + GD+M PGV + V++++A KR I GDKMAGRHGNKG+VSR+L Sbjct: 902 PHGEYGIIVDAKVFTRENGDEMSPGVNQSVRIYIAQKRKISVGDKMAGRHGNKGVVSRVL 961 Query: 1105 PCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGD 1164 P EDMPFL +G P+DIVLNPLGVPSRMN+GQ+ E HL A LG + + I D Sbjct: 962 PVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNVATPIFQGANEHD 1021 Query: 1165 ISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLR 1224 I + T E Y D V + +A ++ + Sbjct: 1022 IQDTLELANDYVNTEDFEEFREKYKDILAPDVMQYLDE-------------NKAHRALWK 1068 Query: 1225 MADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLG 1284 + G+ L DG TGE FD PVT+G+++ LKL+H+V DK++ARSTG YSLVTQQPLG Sbjct: 1069 GVPISRDGKVRLRDGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLG 1128 Query: 1285 GKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTP 1344 GK+ GGQR GEMEVW ++AYGA+Y LQE+LT+KSDDVVGR + YE+I+ G++ E G P Sbjct: 1129 GKAQFGGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGDNIPEPGIP 1188 Query: 1345 ESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDFNKCELK 1386 ESF VL+KE+Q+LGL + + +E + D+ +L+ Sbjct: 1189 ESFKVLLKELQSLGLDVKVLKDDNTEVHLLESV-DYGDTDLR 1229 >gi|256849190|ref|ZP_05554623.1| DNA-directed RNA polymerase subunit beta [Lactobacillus crispatus MV-1A-US] gi|262047206|ref|ZP_06020164.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus crispatus MV-3A-US] gi|312978421|ref|ZP_07790163.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus crispatus CTV-05] gi|256713966|gb|EEU28954.1| DNA-directed RNA polymerase subunit beta [Lactobacillus crispatus MV-1A-US] gi|260572451|gb|EEX29013.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus crispatus MV-3A-US] gi|310894764|gb|EFQ43836.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus crispatus CTV-05] Length = 1212 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 404/963 (41%), Positives = 587/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + VV G R R+ F + E++ +P+L +VQ SY FL ++G++ F Sbjct: 2 LNGHVVNYGKHRTRRSFSRIKEVLKLPNLTDVQTESYKWFL----------DKGIKEVFD 51 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI+ FSG LE+V Y+ PK+ VD+ D TYA P+ +TL+L + Sbjct: 52 DIMPISDFSGKLSLEYVGYKLQKPKYTVDEARNHDATYAAPMHVTLKLT---------NQ 102 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GDLPLMT+ G+F++ G +R++VSQL RSPG+++ D + +G+ ++ Sbjct: 103 ETGEIKTQDVFFGDLPLMTESGSFIVNGAERVIVSQLVRSPGVYYTGDYDK---NGRQIF 159 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+K++ VR+DR RK+P+T + A+G+ S+ +I+ F Sbjct: 160 GTTVIPNRGAWLEYETDAKNVSFVRVDRTRKLPLTVLIRAMGIGSDSDIIDMFGQSDTLQ 219 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 D + AD V + + GE +S + L + + +G Sbjct: 220 FTLDKD-VHKNPADSRVAEALKDIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGR 278 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L G +AE + + +TGEI + G V+ + ++++ Sbjct: 279 YKINKKLSLKNRLYGQTLAETLADPDTGEIVAKKGTVVTHEVMDKLAPYL---------- 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 DR D + Y+ + G + + + + D ++ Sbjct: 329 ------------------DRDDFKMVTYQPSKEGVLPDPIAVQEIKVYSKVDPERE---- 366 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N D+V+H+ D++A I L++ GT DDID+LGNRR+R VGE+ Sbjct: 367 -----VKLMSNGHIADNVKHLTPADVLASINYFFALQDEIGTTDDIDHLGNRRIRRVGEL 421 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +P+V+++ EFF SSQLSQ + N Sbjct: 422 LQNQFRIGLARMERVVRERMSIQDPSTVTPQQLINIRPIVASIKEFFGSSQLSQFMDQHN 481 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A Sbjct: 482 PLGELTHKRRMSALGPGGLTRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLASYA 541 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFIETPYR+V D KVT+ + YL+A EE+N IA AN+ L++DGSF E+L+ R Sbjct: 542 IINKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNYIIAGANTPLNDDGSFKEKLILAR 601 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 + + V +KID++D PKQVVS+A++ IPFLENDDSNR LMG N QRQA PL+ Sbjct: 602 QKEDNVEVSPDKIDYMDVIPKQVVSVASACIPFLENDDSNRALMGANQQRQAAPLINPHG 661 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 VGTGME A SGAA++AK AG+VE VDA I IR +G LD Y L K++ Sbjct: 662 SLVGTGMEYRAAHDSGAALIAKAAGVVEYVDANEIRIRREDGTLDK-------YTLEKYR 714 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN + NQ P VK+GD V ++D+IA+GP+ D G+LALG+N L+AFM W+ YN+ED+++ Sbjct: 715 RSNNSKSYNQTPNVKLGDHVDKSDVIANGPTMDHGELALGQNPLIAFMTWNMYNYEDAIM 774 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSI IE++E ARDTKLGPEEITR++PN+ E+ LK++D GI+ VGAEV Sbjct: 775 LSERLVKDDVYTSISIEDYESEARDTKLGPEEITRELPNIGEDALKDLDADGIVRVGAEV 834 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 + GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+++ R Sbjct: 835 HDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKVYTRE 894 Query: 949 GID 951 D Sbjct: 895 AGD 897 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 173/502 (34%), Positives = 237/502 (47%), Gaps = 69/502 (13%) Query: 882 ICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVD 941 + +G V+ D++ T + + L A + D + V V Sbjct: 728 VKLGDHVDKSDVIANGPT-MDHGELALGQNPLIAFMTWNMYNYEDAIMLSERLVKDDV-- 784 Query: 942 VRIFNRHGIDKNERSISVEREQIELLARDK-DDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 + + R + E+I + +D LD + R+ G G Sbjct: 785 YTSISIEDYESEARDTKLGPEEITRELPNIGEDALKDLDADGIVRV-----GAEVHDGDI 839 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 K T +S R F + +V+ + + K+ Sbjct: 840 LVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDV------KVYTR 893 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 + GD++ PGV +V+V++A KR IQ GDKM+GRHGNKG V+ ++P EDMP+L DGTPVDI Sbjct: 894 EAGDELSPGVNTMVRVYIAQKRKIQVGDKMSGRHGNKGTVAAVVPEEDMPYLPDGTPVDI 953 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 LNP+GVPSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 954 CLNPMGVPSRMNIGQLLELHLGAAARQLGIHVATPVFDGADENDVW-------------- 999 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGL 1240 +R A K G T V+D G Sbjct: 1000 -----------DTVRQAGVDKDG---KTVVYD--------------------------GR 1019 Query: 1241 TGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVW 1300 TGEPF V+VG ++ LKL HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1020 TGEPFHNRVSVGVMHYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1079 Query: 1301 CIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLS 1360 ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q+LGL Sbjct: 1080 ALEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGEKIPKPGVPESFRVLVKELQSLGLD 1139 Query: 1361 IDLENSRTKNSAKMEEIPDFNK 1382 I + + + D ++ Sbjct: 1140 IRVLDMNHNEIELRDMDEDSSE 1161 >gi|295692153|ref|YP_003600763.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus crispatus ST1] gi|295030259|emb|CBL49738.1| DNA-directed RNA polymerase, beta subunit [Lactobacillus crispatus ST1] Length = 1212 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 404/963 (41%), Positives = 587/963 (60%), Gaps = 79/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 + VV G R R+ F + E++ +P+L +VQ SY FL ++G++ F Sbjct: 2 LNGHVVNYGKHRTRRSFSRIKEVLKLPNLTDVQTESYKWFL----------DKGIKEVFD 51 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 + PI+ FSG LE+V Y+ PK+ VD+ D TYA P+ +TL+L + Sbjct: 52 DIMPISDFSGKLSLEYVGYKLQKPKYTVDEARNHDATYAAPMHVTLKLT---------NQ 102 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GDLPLMT+ G+F++ G +R++VSQL RSPG+++ D + +G+ ++ Sbjct: 103 ETGEIKTQDVFFGDLPLMTESGSFIVNGAERVIVSQLVRSPGVYYTGDYDK---NGRQIF 159 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE-EILSTFYPKIVYS 239 +IP++G W++ E D+K++ VR+DR RK+P+T + A+G+ S+ +I+ F Sbjct: 160 GTTVIPNRGAWLEYETDAKNVSFVRVDRTRKLPLTVLIRAMGIGSDSDIIDMFGQSDTLQ 219 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 D + AD V + + GE +S + L + + +G Sbjct: 220 FTLDKD-VHKNPADSRVAEALKDIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGR 278 Query: 299 TS--------DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVD 350 + L G +AE + + +TGEI + G V+ + ++++ Sbjct: 279 YKINKKLSLKNRLYGQTLAETLADPDTGEIVAKKGTVVTHEVMDKLAPYL---------- 328 Query: 351 SVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLST 410 DR D + Y+ + G + + + + D ++ Sbjct: 329 ------------------DRDDFKMVTYQPSKEGVLPDPITVQEIKVYSKVDPERE---- 366 Query: 411 VGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEM 470 + + N D+V+H+ D++A I L++ GT DDID+LGNRR+R VGE+ Sbjct: 367 -----VKLMSNGHIADNVKHLTPADVLASINYFFALQDEIGTTDDIDHLGNRRIRRVGEL 421 Query: 471 LKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVN 530 L+NQ+R+GL RMER ++ER+S D +V PQ LIN +P+V+++ EFF SSQLSQ + N Sbjct: 422 LQNQFRIGLARMERVVRERMSIQDPSTVTPQQLINIRPIVASIKEFFGSSQLSQFMDQHN 481 Query: 531 SLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFA 590 L +TH RR+SALG GG+ R RAG E+RDVH THYGR+CP ET EG NIGL++SL S+A Sbjct: 482 PLGELTHKRRMSALGPGGLTRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLASYA 541 Query: 591 RVNAYGFIETPYRKV--CDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCR 648 +N YGFIETPYR+V D KVT+ + YL+A EE+N IA AN+ L++DGSF E+L+ R Sbjct: 542 IINKYGFIETPYRRVSWKDHKVTDKIDYLTADEEDNYIIAGANTPLNDDGSFKEKLILAR 601 Query: 649 CAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEA 708 + + V +KID++D PKQVVS+A++ IPFLENDDSNR LMG N QRQA PL+ Sbjct: 602 QKEDNVEVSPDKIDYMDVIPKQVVSVASACIPFLENDDSNRALMGANQQRQAAPLINPHG 661 Query: 709 PFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQ 768 VGTGME A SGAA++AK AG+VE VDA I IR +G LD Y L K++ Sbjct: 662 SLVGTGMEYRAAHDSGAALIAKAAGVVEYVDANEIRIRREDGTLDK-------YTLEKYR 714 Query: 769 RSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSML 828 RSN + NQ P VK+GD V ++D+IA+GP+ D G+LALG+N L+AFM W+ YN+ED+++ Sbjct: 715 RSNNSKSYNQTPNVKLGDHVDKSDVIANGPTMDHGELALGQNPLIAFMTWNMYNYEDAIM 774 Query: 829 ISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEV 888 +SER+V +DV+TSI IE++E ARDTKLGPEEITR++PN+ E+ LK++D GI+ VGAEV Sbjct: 775 LSERLVKDDVYTSISIEDYESEARDTKLGPEEITRELPNIGEDALKDLDADGIVRVGAEV 834 Query: 889 NPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRH 948 + GDILVGK+TPKG + ++ EE+LL AIFGEKA +VRDTSLRVP G G V DV+++ R Sbjct: 835 HDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKVYTRE 894 Query: 949 GID 951 D Sbjct: 895 AGD 897 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 173/502 (34%), Positives = 237/502 (47%), Gaps = 69/502 (13%) Query: 882 ICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVD 941 + +G V+ D++ T + + L A + D + V V Sbjct: 728 VKLGDHVDKSDVIANGPT-MDHGELALGQNPLIAFMTWNMYNYEDAIMLSERLVKDDV-- 784 Query: 942 VRIFNRHGIDKNERSISVEREQIELLARDK-DDEQVILDRNIYSRLMEILCGQNAVSGPK 1000 + + R + E+I + +D LD + R+ G G Sbjct: 785 YTSISIEDYESEARDTKLGPEEITRELPNIGEDALKDLDADGIVRV-----GAEVHDGDI 839 Query: 1001 GFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060 K T +S R F + +V+ + + K+ Sbjct: 840 LVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDV------KVYTR 893 Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120 + GD++ PGV +V+V++A KR IQ GDKM+GRHGNKG V+ ++P EDMP+L DGTPVDI Sbjct: 894 EAGDELSPGVNTMVRVYIAQKRKIQVGDKMSGRHGNKGTVAAVVPEEDMPYLPDGTPVDI 953 Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180 LNP+GVPSRMN+GQ+ E HLG A LG + + + D D+ Sbjct: 954 CLNPMGVPSRMNIGQLLELHLGAAARQLGIHVATPVFDGADENDVW-------------- 999 Query: 1181 HTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGL 1240 +R A K G T V+D G Sbjct: 1000 -----------DTVRQAGVDKDG---KTVVYD--------------------------GR 1019 Query: 1241 TGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVW 1300 TGEPF V+VG ++ LKL HMV DK++ARS G YSLVTQQPLGGK+ GGQR GEMEVW Sbjct: 1020 TGEPFHNRVSVGVMHYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1079 Query: 1301 CIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLS 1360 ++AYGAAY LQE+LT KSDDVVGR + YE+IV G + G PESF VLVKE+Q+LGL Sbjct: 1080 ALEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGEKIPKPGVPESFRVLVKELQSLGLD 1139 Query: 1361 IDLENSRTKNSAKMEEIPDFNK 1382 I + + + D ++ Sbjct: 1140 IRVLDMNHNEIELRDMDEDSSE 1161 >gi|15903819|ref|NP_359369.1| DNA-directed RNA polymerase subunit beta [Streptococcus pneumoniae R6] gi|15459460|gb|AAL00580.1| DNA-dependent RNA polymerase subunit beta [Streptococcus pneumoniae R6] Length = 1216 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 419/963 (43%), Positives = 583/963 (60%), Gaps = 80/963 (8%) Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60 +A V G R R+ F + E++D+P+LIE+Q S+ FL + GL+ F+ Sbjct: 14 LAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFL----------DHGLKEVFE 63 Query: 61 SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK 120 V PI+ F+ LEFV YE PK+ +++ D +Y+ P+ +T RLI K Sbjct: 64 DVLPISNFTDTMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLI---------NK 114 Query: 121 SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY 180 +IK Q ++ GD P+MT+ GTF+I G +RI+VSQL RSPG++F+ + +GK+ Y Sbjct: 115 ETGEIKTQEVFFGDFPIMTEMGTFIINGGERIIVSQLVRSPGVYFN---DKVDKNGKVGY 171 Query: 181 ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMD-SEEILSTFYPKIVYS 239 +IP++G W+++E DSKDI + RIDR RK+P T+ + ALG +EI F + Sbjct: 172 GSTVIPNRGAWLELESDSKDITYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR 231 Query: 240 QRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQ-VIESGKKLTSGLLKSLKEKGVKFLGI 298 + + D + + GE ES + L + + +G Sbjct: 232 NTVEKDI-HKNPMDSRTDEALKEIYERLRP