RPSBLAST alignment for GI: 254780143 and conserved domain: pfam04563

>gnl|CDD|113338 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the protrusion domain. The other lobe (pfam04561) is nested within this domain. Length = 394

 Score = 77.0 bits (190), Expect = 4e-14
 Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 58/238 (24%)

Query: 28  DLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE--FVSYEFDPPK 85
            L+E Q  S++ FL          +EGLQ       PI                +   PK
Sbjct: 1   GLVEQQLDSFNWFL----------DEGLQEEIDEFPPIEDEDEEPEFSLKVGQIKLAKPK 50

Query: 86  FDVDD----------CLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDL 135
               D             R+LTY+ PL +   L V + +E         I++Q +++G +
Sbjct: 51  IKESDGKTREIYPREARLRNLTYSSPLYVPAELTVNNTEE---------IEKQKVFIGKI 101

Query: 136 PLMTK------------------------DGTFVIKGIQRIVVSQLHRSPGIHFDHDKGR 171
           PLM +                         G F++ GI++++++Q+ RSP I++   K +
Sbjct: 102 PLMLRSNACILNGASESELVKLGECPLDPGGYFIVNGIEKVIINQIQRSPNIYYVFKKDK 161

Query: 172 ASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEIL 229
             +     Y+  II ++G  + +E  SK  I+ RI+   K+ +   L+ALG++  EI+
Sbjct: 162 NGIRI---YSASIISNRGRSVRLEITSKGKIYARINSGAKLIIFVLLLALGLNPVEII 216