RPSBLAST alignment for GI: 254780143 and conserved domain: CHL00001

>gnl|CDD|176946 CHL00001, rpoB, RNA polymerase beta subunit. Length = 1070
 Score =  138 bits (351), Expect = 7e-33
 Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 33/231 (14%)

Query: 16  FFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLE 75
               N  +  IP   ++Q   +  F+          ++GL         I         +
Sbjct: 2   LRDGNEGMSTIPGFNQIQFEGFCRFI----------DQGLTEELSKFPKIEDTDQEIEFQ 51

Query: 76  FVS--YEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMG 133
                Y+   P     D ++  LTY+  L +   LI          K  +D++EQ++++G
Sbjct: 52  LFVETYQLVEPLIKERDAVYESLTYSSELYVPAGLI---------WKKSRDMQEQTVFIG 102

Query: 134 DLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHF----DHDKGRASLSGKLLYACRIIPDQG 189
           ++PLM   GTF+I GI R+V++Q+ RSPGI++    DH       +G  +Y   II D G
Sbjct: 103 NIPLMNSLGTFIINGIYRVVINQILRSPGIYYRSELDH-------NGISVYTGTIISDWG 155

Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEIL-STFYPKIVYS 239
             +++E D K  I  R+ R++K+ +   L A+G++  EIL +  YP+I  S
Sbjct: 156 GRLELEIDRKARIWARVSRKQKISILVLLSAMGLNLREILDNVCYPEIFLS 206