RPSBLAST alignment for GI: 254780143 and conserved domain: KOG0214

>gnl|CDD|35435 KOG0214, KOG0214, KOG0214, RNA polymerase II, second largest subunit [Transcription]. Length = 1141
 Score =  179 bits (455), Expect = 6e-45
 Identities = 119/538 (22%), Positives = 203/538 (37%), Gaps = 63/538 (11%)

Query: 449 GKGTIDDIDNLGNRRVRS-VGEMLKNQYRLGLLRMERSIKERISSVDIDSVMP--QDLIN 505
           G   +D    L  +  RS   ++L++  R     +E  +   I       ++    +   
Sbjct: 359 GNKRLDLAGPLLAKLFRSLFAKLLRDVTRYMQKCLENGVDFNIELAIKAKIITNGLNYAL 418

Query: 506 AKPVVSAVCE-FFCSSQLSQLEEHVNSLSRITHTRRLSALG--QGGVARARAGVEMRDVH 562
           A        +     + +SQ+   +N LS ++H RR ++     G +A+ R       +H
Sbjct: 419 ATGNWGDQKKAMQGRAGVSQVLNRLNPLSTLSHLRRTNSPIGRTGKLAKPR------QLH 472

Query: 563 PTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD--GKVTNDVVYLSAM 620
            +H+G +CPAET EG   GLV +L+  A ++  G +E+P  +  +  G    + +  S  
Sbjct: 473 NSHWGMVCPAETPEGQACGLVKNLSLMAYIS-VGSLESPIVEFLEEWGMENLEEISPSPS 531

Query: 621 EEENRYIAQANS-SLDED-GSFTEELVFCRCAGEEILVPREKIDFIDASPKQV---VSIA 675
            +  +         L  D       L   R    +  +  E     D   K++       
Sbjct: 532 PDATKVFVNGVWVGLHRDPEELVATLKRLR---RQFDIIAEVSMVRDIRDKEIRIFTDAG 588

Query: 676 ASLIPFLENDD--------SNRVLM--GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725
            SL P L  ++          R L     N  R A  L   E  ++ T  E  V  + G 
Sbjct: 589 RSLRPLLIVENAKLLIKKRHIRALKQSKPNEYRWAHLLSSGEVEYIDTEEEETVMIAMGP 648

Query: 726 AIVAKRA--GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR---SNQNTCVNQRP 780
             +A+ A        +    +I  V   + P        R   +Q           +  P
Sbjct: 649 KDLAESAYPKTYTHCEIHPSMILGVCASIIPFPDHNQSPRNT-YQSAMGKQAMGVYHTNP 707

Query: 781 LVKVGDEVRRNDIIADGPSTDLG-------DLALGRNMLVAFMPWHGYNFEDSMLISERM 833
            V++    +          T          +L  G+N +VA   + GYN EDS+++++  
Sbjct: 708 QVRMDTLAKVLYYPQKPLVTTRAMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSS 767

Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKN-----IDECGIICVGAEV 888
           V   +F S  I  ++        GPEEI  + P     G++N     +D+ GII  G+ V
Sbjct: 768 VDRGLFRSFFIRSYKDQEHKKDQGPEEIFEEPPRGEGRGMRNGKYDKLDDDGIIMPGSRV 827

Query: 889 NPGDILVGKITPK--GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944
           + GD+L+GK TP+   E    PE++L            RD S ++     G +VD   
Sbjct: 828 SGGDVLIGKTTPQPAKEDESGPEDRLYTK---------RDHSTKLRHTERG-IVDQVW 875