RPSBLAST alignment for GI: 254780143 and conserved domain: KOG0214
>gnl|CDD|35435 KOG0214, KOG0214, KOG0214, RNA polymerase II, second largest subunit [Transcription]. Length = 1141
Score = 179 bits (455), Expect = 6e-45
Identities = 119/538 (22%), Positives = 203/538 (37%), Gaps = 63/538 (11%)
Query: 449 GKGTIDDIDNLGNRRVRS-VGEMLKNQYRLGLLRMERSIKERISSVDIDSVMP--QDLIN 505
G +D L + RS ++L++ R +E + I ++ +
Sbjct: 359 GNKRLDLAGPLLAKLFRSLFAKLLRDVTRYMQKCLENGVDFNIELAIKAKIITNGLNYAL 418
Query: 506 AKPVVSAVCE-FFCSSQLSQLEEHVNSLSRITHTRRLSALG--QGGVARARAGVEMRDVH 562
A + + +SQ+ +N LS ++H RR ++ G +A+ R +H
Sbjct: 419 ATGNWGDQKKAMQGRAGVSQVLNRLNPLSTLSHLRRTNSPIGRTGKLAKPR------QLH 472
Query: 563 PTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCD--GKVTNDVVYLSAM 620
+H+G +CPAET EG GLV +L+ A ++ G +E+P + + G + + S
Sbjct: 473 NSHWGMVCPAETPEGQACGLVKNLSLMAYIS-VGSLESPIVEFLEEWGMENLEEISPSPS 531
Query: 621 EEENRYIAQANS-SLDED-GSFTEELVFCRCAGEEILVPREKIDFIDASPKQV---VSIA 675
+ + L D L R + + E D K++
Sbjct: 532 PDATKVFVNGVWVGLHRDPEELVATLKRLR---RQFDIIAEVSMVRDIRDKEIRIFTDAG 588
Query: 676 ASLIPFLENDD--------SNRVLM--GCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGA 725
SL P L ++ R L N R A L E ++ T E V + G
Sbjct: 589 RSLRPLLIVENAKLLIKKRHIRALKQSKPNEYRWAHLLSSGEVEYIDTEEEETVMIAMGP 648
Query: 726 AIVAKRA--GIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQR---SNQNTCVNQRP 780
+A+ A + +I V + P R +Q + P
Sbjct: 649 KDLAESAYPKTYTHCEIHPSMILGVCASIIPFPDHNQSPRNT-YQSAMGKQAMGVYHTNP 707
Query: 781 LVKVGDEVRRNDIIADGPSTDLG-------DLALGRNMLVAFMPWHGYNFEDSMLISERM 833
V++ + T +L G+N +VA + GYN EDS+++++
Sbjct: 708 QVRMDTLAKVLYYPQKPLVTTRAMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSS 767
Query: 834 VSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKN-----IDECGIICVGAEV 888
V +F S I ++ GPEEI + P G++N +D+ GII G+ V
Sbjct: 768 VDRGLFRSFFIRSYKDQEHKKDQGPEEIFEEPPRGEGRGMRNGKYDKLDDDGIIMPGSRV 827
Query: 889 NPGDILVGKITPK--GESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRI 944
+ GD+L+GK TP+ E PE++L RD S ++ G +VD
Sbjct: 828 SGGDVLIGKTTPQPAKEDESGPEDRLYTK---------RDHSTKLRHTERG-IVDQVW 875