RPSBLAST alignment for GI: 254780143 and conserved domain: KOG0216
>gnl|CDD|35437 KOG0216, KOG0216, KOG0216, RNA polymerase I, second largest subunit [Transcription]. Length = 1111
Score = 135 bits (340), Expect = 1e-31
Identities = 102/420 (24%), Positives = 159/420 (37%), Gaps = 103/420 (24%)
Query: 994 NAVSGPKGFKKSTVLSS---DLISEYPRSQWWQFAVQDEKVQR-NVESL-----KVQYET 1044
N S +GF TV + DL + RS+ + + + ++++ + + L K++Y
Sbjct: 744 NKSSYERGFAYGTVYKTEKIDLSKKRSRSKHFGRSPGEPELKKLDADGLPSIGQKLEYGD 803
Query: 1045 SKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVF--------------VAMKRPIQSGDKM 1090
D K +I+ PG++ V+V + + R GDK
Sbjct: 804 PYYAYFDEETGK-TRIKKYHGTEPGIVDEVRVLGNDMGDQEKCATITLRIPRNPIIGDKF 862
Query: 1091 AGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGK 1150
+ RHG KGI S+ P DMPF + G DI++NP PSRM +G
Sbjct: 863 SSRHGQKGICSQKWPTIDMPFTESGMVPDIIINPHAFPSRMTIGM--------------- 907
Query: 1151 KIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPV 1210
+E + G + D +TP
Sbjct: 908 --------------------LIESMAGKAGALHGNA-QD-----------------ATPF 929
Query: 1211 FDGADEEAIN---SMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKV 1267
+ AI+ ML+ A + G +Y G+ G + G +Y +L HMVSDK
Sbjct: 930 IFSEENTAIDYFGEMLKKAGYNYYGNEPMYSGVDGREMRADIFFGVVYYQRLRHMVSDKF 989
Query: 1268 YARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD-DVVGRT 1326
RSTG +T QP+ G+ GG R GEME + A+G +++LQ+ L SD V
Sbjct: 990 QVRSTGPVDSLTHQPVKGRKRGGGIRFGEMERDALIAHGTSFLLQDRLLNSSDYTVAEVC 1049
Query: 1327 RVYESIVA----------------------GNDTFETGTPESFNVLVKEMQALGLSIDLE 1364
R SI++ G P F L E+ A+ + + L+
Sbjct: 1050 RTCGSILSTQQKLIKEPGGSTSTVTCRSCDGKGVTTVAMPYVFKYLTAELAAMNIKMRLD 1109