Query         gi|254780144|ref|YP_003064557.1| 50S ribosomal protein L12P [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 126
No_of_seqs    114 out of 1829
Neff          5.0 
Searched_HMMs 23785
Date          Sun May 22 12:39:50 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780144.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2ftc_E Mitochondrial ribosomal 100.0 1.2E-38 5.2E-43  252.4  13.2  123    3-126     2-137 (137)
  2 2j01_L 50S ribosomal protein L 100.0   1E-38 4.2E-43  253.0  12.7  122    2-126     3-125 (125)
  3 2zjq_5 50S ribosomal protein L 100.0 2.4E-38   1E-42  250.6  11.8  120    2-126     3-122 (122)
  4 1rqu_A L8, 50S ribosomal prote 100.0 7.6E-38 3.2E-42  247.6  11.9  118    3-126     3-120 (120)
  5 1dd3_A 50S ribosomal protein L 100.0 1.3E-38 5.5E-43  252.3   6.7  122    3-126     2-128 (128)
  6 1ctf_A Ribosomal protein L7/L1  99.9 6.9E-26 2.9E-30  175.5   5.7   74   51-126     1-74  (74)
  7 1dd4_C 50S ribosomal protein L  98.6 3.3E-08 1.4E-12   68.9   4.5   37    4-40      3-39  (40)
  8 1rqt_A L8, 50S ribosomal prote  97.7 2.3E-05 9.5E-10   51.9   4.4   32    5-36      5-36  (37)
  9 1zav_U 50S ribosomal protein L  97.0 0.00047   2E-08   44.0   4.1   29    3-31      2-30  (30)
 10 1aip_C EF-TS, elongation facto  77.2     3.9 0.00016   20.3   5.1   25   72-96      4-28  (196)
 11 2cp9_A EF-TS, EF-TSMT, elongat  69.1     3.3 0.00014   20.8   3.1   41   69-115     7-47  (64)
 12 1xb2_B EF-TS, elongation facto  65.5     4.2 0.00018   20.1   3.1   25   72-96      5-29  (291)
 13 1sy7_A Catalase 1; heme oxidat  61.9     8.6 0.00036   18.3   6.7   92    5-125   463-566 (715)
 14 1efu_B Elongation factor TS; c  57.3      10 0.00043   17.8   5.2   38   71-114     4-41  (282)
 15 2zkr_l 60S ribosomal protein L  36.2      20 0.00086   16.0   2.7   16  110-125   131-146 (148)
 16 1mul_A NS2, HU-2, DNA binding   31.9     7.8 0.00033   18.5  -0.0   17   13-29     15-31  (90)
 17 1vq8_L 50S ribosomal protein L  30.4      28  0.0012   15.2   2.7   16  110-125   128-143 (165)
 18 1hue_A HU protein; DNA-binding  29.8      10 0.00042   17.8   0.2   18   13-30     15-32  (90)
 19 1in0_A YAJQ protein, HI1034; a  25.4      31  0.0013   14.9   2.1   66   57-124    45-122 (163)
 20 3jyw_V 60S ribosomal protein L  22.6      34  0.0014   14.6   1.9   16  110-125   126-141 (142)
 21 1b8z_A Protein (histonelike pr  21.8      13 0.00056   17.1  -0.4   17   13-29     15-31  (90)

No 1  
>2ftc_E Mitochondrial ribosomal protein L7/12, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
Probab=100.00  E-value=1.2e-38  Score=252.39  Aligned_cols=123  Identities=33%  Similarity=0.495  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf             189999999609999999999999999378710001223------------55444432222222431157774377554
Q gi|254780144|r    3 NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVV------------APVAAEAGSAASEKTEFEVVLKGFDDPKK   70 (126)
Q Consensus         3 ki~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~~~------------~~~~~~~~~~~~EKt~fdV~L~~~~~~~~   70 (126)
                      |+++|+|+|++|||+|++||++.|+++|||+..++++++            +++.+..++..+|||+|||+|++|++ ++
T Consensus         2 kv~~iv~~i~~LtllE~~eL~~~le~k~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EKt~FdV~L~~~~~-~~   80 (137)
T 2ftc_E            2 KIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKP-VD   80 (137)
T ss_pred             CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEEECCCCC-HH
T ss_conf             68999999970989999999999999969984311221223344555445566555442100013357887324772-12


Q ss_pred             CHHHHHHHHH-HCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             3357877677-6599889999998637977660999899999999999748579939
Q gi|254780144|r   71 KIAVIKEVRA-ITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVELR  126 (126)
Q Consensus        71 Ki~vIK~vR~-it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~VeiK  126 (126)
                      ||+|||+||+ +|||||||||+|||++|++||+|+||+|||++|++|+++||+|+|+
T Consensus        81 KI~vIK~VR~~it~LgLkEAK~lVE~~P~~iKe~vsKeEAE~ik~kLe~aGA~Vele  137 (137)
T 2ftc_E           81 KVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE  137 (137)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             678999999871799859999998808898872899999999999999859979729


No 2  
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=100.00  E-value=1e-38  Score=252.95  Aligned_cols=122  Identities=55%  Similarity=0.780  Sum_probs=110.1

Q ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             718999999960999999999999999937871000122-3554444322222224311577743775543357877677
Q gi|254780144|r    2 SNIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSV-VAPVAAEAGSAASEKTEFEVVLKGFDDPKKKIAVIKEVRA   80 (126)
Q Consensus         2 aki~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~~-~~~~~~~~~~~~~EKt~fdV~L~~~~~~~~Ki~vIK~vR~   80 (126)
                      -++++|+|+|++||++|++||++.|+++|||++++++++ +++++++++++++|||+|||+|++|+  ++||+|||+||+
T Consensus         3 ~~~~~i~d~i~~LTllE~~eLv~~leek~gv~~~~~~~~~~~~~~~~~~~~~~Ekt~f~V~L~~~~--~kKI~vIK~vR~   80 (125)
T 2j01_L            3 LDIERIKEELSQATVLELKQLIDALKEAWGVTAAAPVAVAAAPAAGAAAAPAEEKTEFDVILKEAG--AKKLEVIKELRA   80 (125)
T ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC--CCCCEEHHHHHH
T ss_conf             659999999960879999999999999979885421134667776666553332655589962378--765200236665


Q ss_pred             HCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             6599889999998637977660999899999999999748579939
Q gi|254780144|r   81 ITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVELR  126 (126)
Q Consensus        81 it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~VeiK  126 (126)
                      +|||||||||+|||+ |.+||+|++|+|||++|++||++||+|+||
T Consensus        81 it~LgLkEAK~lVE~-p~~vke~vsKeeAe~~K~kLe~aGA~VelK  125 (125)
T 2j01_L           81 ITGLGLKEAKDLAEK-GGPVKEGVSKQEAEEIKKKLEAVGAVVELK  125 (125)
T ss_pred             HCCCCHHHHHHHHHC-CCHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             069988999998606-710421899999999999999859979739


No 3  
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=100.00  E-value=2.4e-38  Score=250.64  Aligned_cols=120  Identities=49%  Similarity=0.692  Sum_probs=107.9

Q ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             71899999996099999999999999993787100012235544443222222243115777437755433578776776
Q gi|254780144|r    2 SNIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEAGSAASEKTEFEVVLKGFDDPKKKIAVIKEVRAI   81 (126)
Q Consensus         2 aki~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~~~~~~~~~~~~~~~EKt~fdV~L~~~~~~~~Ki~vIK~vR~i   81 (126)
                      .+.++|+|+|++|||+|++||++.|+++|||+++++++++  +++++.++++|||+|||+|++|+  ++||+|||+||++
T Consensus         3 ~~~~~ive~i~~LTllE~~eLv~~lee~fgv~~~~~~~~~--~~~~~~~~~~Ekt~F~V~L~~~~--~~Ki~vIK~vR~i   78 (122)
T 2zjq_5            3 YDKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVSGG--GAGAASPAAEEKTEFDVVLIDAG--ASKINVIKEIRGI   78 (122)
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCEEEEEEECCC--CCCCEEEEHHHHC
T ss_conf             7699999999618899999999999998599844345666--65666665555526799963278--7765366302521


Q ss_pred             CCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             599889999998637977660999899999999999748579939
Q gi|254780144|r   82 TDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVELR  126 (126)
Q Consensus        82 t~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~VeiK  126 (126)
                      |||||||||+|||+ |++||+|+||+|||++|++|+++||+|+||
T Consensus        79 t~LgLkEAK~lVE~-p~~ike~vsKeeAE~ikkkLe~aGA~VeiK  122 (122)
T 2zjq_5           79 TGLGLKEAKDMSEK-GGVLKEGVAKDEAEKMKAQLEAAGARVELK  122 (122)
T ss_pred             CCCCHHHHHHHHHC-CHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             69988999988607-716641899999999999999859879749


No 4  
>1rqu_A L8, 50S ribosomal protein L7/L12; ribosome,; NMR {Escherichia coli} SCOP: a.108.1.1 d.45.1.1 PDB: 1rqv_A 2gya_3 2gyc_3
Probab=100.00  E-value=7.6e-38  Score=247.64  Aligned_cols=118  Identities=52%  Similarity=0.760  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHC
Q ss_conf             18999999960999999999999999937871000122355444432222222431157774377554335787767765
Q gi|254780144|r    3 NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEAGSAASEKTEFEVVLKGFDDPKKKIAVIKEVRAIT   82 (126)
Q Consensus         3 ki~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~~~~~~~~~~~~~~~EKt~fdV~L~~~~~~~~Ki~vIK~vR~it   82 (126)
                      ..++|+++|++|||+|+++|++.|+++|||++.+++++    +++++++++|||+|+|+|+.++  ++||+|||+||++|
T Consensus         3 ~~~~ive~i~~LTllE~~eLv~~le~~fgv~~~~~~~~----~~~~~~~~~ekt~f~vil~~~~--~~Ki~VIK~VR~it   76 (120)
T 1rqu_A            3 TKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAV----AAGPVEAAEEKTEFDVILKAAG--ANKVAVIKAVRGAT   76 (120)
T ss_dssp             CHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCTTCCCC----CCCCCCSSCCCCCEEEEEEECC--SCHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCCHHHHHHHCCC--CCCCHHHHHHHHHC
T ss_conf             88999999970889999999999999949996655566----7776544454316888874046--54314689998745


Q ss_pred             CCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             99889999998637977660999899999999999748579939
Q gi|254780144|r   83 DLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVELR  126 (126)
Q Consensus        83 ~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~VeiK  126 (126)
                      ||||+|||+|||++|++||+|++|+|||++|++|+++||+|+||
T Consensus        77 ~LgLkEAK~lVE~~P~~ike~vsKeeAe~iK~kLe~aGa~VelK  120 (120)
T 1rqu_A           77 GLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK  120 (120)
T ss_dssp             CCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             99889999998728898871899999999999999859978629


No 5  
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=100.00  E-value=1.3e-38  Score=252.25  Aligned_cols=122  Identities=59%  Similarity=0.836  Sum_probs=108.3

Q ss_pred             CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             1899999996099999999999999993787100012235--54444322222224311577743775543357877677
Q gi|254780144|r    3 NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVA--PVAAEAGSAASEKTEFEVVLKGFDDPKKKIAVIKEVRA   80 (126)
Q Consensus         3 ki~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~~~~--~~~~~~~~~~~EKt~fdV~L~~~~~~~~Ki~vIK~vR~   80 (126)
                      .+++|+|+|++|||+|+++|++.|+++|||++++++++++  +++++++++.+|||+|||+|++|+  ++||+|||+||+
T Consensus         2 t~~~ive~i~~LtllE~~eLv~~leek~gv~~~~~~~~~~~~~~~~~~~~~~~Ekt~F~V~L~~~~--~~KI~vIK~VR~   79 (128)
T 1dd3_A            2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKTEFDVVLKSFG--QNKIQVIKVVRE   79 (128)
T ss_dssp             CHHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEECT--TCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC--CCCHHHHHHHHH
T ss_conf             889999999719899999999999999799866310023567666665442233654699981377--654012345775


Q ss_pred             HCCCCHHHHHHHHHHCCH---HHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             659988999999863797---7660999899999999999748579939
Q gi|254780144|r   81 ITDLGLKEAKELVESAPK---SLKTGLSKDEANEMKKKLEDAGATVELR  126 (126)
Q Consensus        81 it~LgLkEAK~lVe~~P~---~ike~v~keeAE~ik~~Le~aGa~VeiK  126 (126)
                      +|||||||||+|||++|+   +||+|++|+|||++|++|+++||+|+||
T Consensus        80 it~LgLkEAK~lVE~aP~~~~viKe~vsKeeAE~iK~kLe~aGA~VelK  128 (128)
T 1dd3_A           80 ITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK  128 (128)
T ss_dssp             HHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEEC
T ss_pred             HCCCCHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             3699889999999717984067853889999999999999859879739


No 6  
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=99.92  E-value=6.9e-26  Score=175.54  Aligned_cols=74  Identities=64%  Similarity=0.887  Sum_probs=70.7

Q ss_pred             CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             2222243115777437755433578776776599889999998637977660999899999999999748579939
Q gi|254780144|r   51 AASEKTEFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVELR  126 (126)
Q Consensus        51 ~~~EKt~fdV~L~~~~~~~~Ki~vIK~vR~it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~VeiK  126 (126)
                      +++|||+|||+|++|++  +||+|||+||++|||||+|||+|||++|++|++|++|+|||++|++|+++||+|+||
T Consensus         1 aaeEkt~f~V~L~~~~~--~Ki~vIK~VR~itglgLkeAK~lVe~~P~~ike~v~keeAe~ik~~le~aGA~V~lk   74 (74)
T 1ctf_A            1 AAEEKTEFDVILKAAGA--NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK   74 (74)
T ss_dssp             ------CEEEEEEECGG--GHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCCCCEEEEEEEECCC--CHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             98656554899831785--414799999876599999999998718899973899999999999999859889849


No 7  
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=98.59  E-value=3.3e-08  Score=68.95  Aligned_cols=37  Identities=51%  Similarity=0.810  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             8999999960999999999999999937871000122
Q gi|254780144|r    4 IESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSV   40 (126)
Q Consensus         4 i~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~~   40 (126)
                      +++|++.|++||++|++||++.+|++|||++++|++.
T Consensus         3 ~e~iieaie~ltVlEl~eLvKa~EekfGVsAaAPVav   39 (40)
T 1dd4_C            3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAV   39 (40)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHTCCCSCC----
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             9999999984749999999999999858651444144


No 8  
>1rqt_A L8, 50S ribosomal protein L7/L12; protein L7/L12,ribosome,; NMR {Escherichia coli} SCOP: a.108.1.1
Probab=97.75  E-value=2.3e-05  Score=51.90  Aligned_cols=32  Identities=31%  Similarity=0.672  Sum_probs=30.3

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999996099999999999999993787100
Q gi|254780144|r    5 ESIVEKLSSLTLIEAAELSKRLEKEWGVSASA   36 (126)
Q Consensus         5 ~~ive~i~~LTllE~~eLv~~leekfgv~~~~   36 (126)
                      ++|++.|.+||++++.||+..+|+||||++++
T Consensus         5 e~ILeaia~mSVmdvveLisaMEeKFGVs~~~   36 (37)
T 1rqt_A            5 DQIIEAVAAMSVMDVVELISAMEEKFGVSAAA   36 (37)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHTTCCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999998832999999999999984877467


No 9  
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=97.05  E-value=0.00047  Score=43.97  Aligned_cols=29  Identities=45%  Similarity=0.737  Sum_probs=27.8

Q ss_pred             CHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf             18999999960999999999999999937
Q gi|254780144|r    3 NIESIVEKLSSLTLIEAAELSKRLEKEWG   31 (126)
Q Consensus         3 ki~~ive~i~~LTllE~~eLv~~leekfg   31 (126)
                      .+++|++.|..||+-|++|||+.++++||
T Consensus         2 ~~eeiv~aiekltvaelaelvk~ledkfg   30 (30)
T 1zav_U            2 TIDEIIEAIEKLTVSELAELVKKLEDKFG   30 (30)
T ss_dssp             CHHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             79999999999619999999999876648


No 10 
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=77.24  E-value=3.9  Score=20.33  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf             3578776776599889999998637
Q gi|254780144|r   72 IAVIKEVRAITDLGLKEAKELVESA   96 (126)
Q Consensus        72 i~vIK~vR~it~LgLkEAK~lVe~~   96 (126)
                      +..||.+|+.||-|+++.|+....+
T Consensus         4 ~~lvk~LR~~Tgag~~dcKkAL~e~   28 (196)
T 1aip_C            4 MELIKKLREATGAGMMDVKRALEDA   28 (196)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             7999999998797999999999984


No 11 
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=69.11  E-value=3.3  Score=20.80  Aligned_cols=41  Identities=17%  Similarity=0.202  Sum_probs=30.8

Q ss_pred             CCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHH
Q ss_conf             54335787767765998899999986379776609998999999999
Q gi|254780144|r   69 KKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKK  115 (126)
Q Consensus        69 ~~Ki~vIK~vR~it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~  115 (126)
                      ..-+..||.+|+.||.|+.+.|...+.+      +-+-+.|.++-.+
T Consensus         7 ~~s~elik~LR~~Tga~~~dcK~AL~e~------~gD~ekA~~~Lr~   47 (64)
T 2cp9_A            7 GSSKELLMKLRRKTGYSFVNCKKALETC------GGDLKQAEIWLHK   47 (64)
T ss_dssp             CCCCHHHHHHHHHHCCCHHHHHHHHHHH------TSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHC------CCCHHHHHHHHHH
T ss_conf             1309999999999798899999999992------8999999999999


No 12 
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=65.45  E-value=4.2  Score=20.12  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf             3578776776599889999998637
Q gi|254780144|r   72 IAVIKEVRAITDLGLKEAKELVESA   96 (126)
Q Consensus        72 i~vIK~vR~it~LgLkEAK~lVe~~   96 (126)
                      ...||.+|..||.|+++.|+..+.+
T Consensus         5 ~~lIK~LR~~TgagmmdCKkAL~e~   29 (291)
T 1xb2_B            5 KELLMKLRRKTGYSFINCKKALETC   29 (291)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             9999999988698699999999985


No 13 
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=61.86  E-value=8.6  Score=18.26  Aligned_cols=92  Identities=12%  Similarity=0.097  Sum_probs=55.3

Q ss_pred             HHHHHHHHHCCHH---HHH---------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCH
Q ss_conf             9999999609999---999---------9999999993787100012235544443222222243115777437755433
Q gi|254780144|r    5 ESIVEKLSSLTLI---EAA---------ELSKRLEKEWGVSASAPVSVVAPVAAEAGSAASEKTEFEVVLKGFDDPKKKI   72 (126)
Q Consensus         5 ~~ive~i~~LTll---E~~---------eLv~~leekfgv~~~~~~~~~~~~~~~~~~~~~EKt~fdV~L~~~~~~~~Ki   72 (126)
                      +.|...+++.+--   +..         +|-..+.+.+|+++..+.........   ......++|.-....+ . .+||
T Consensus       463 ~n~~~~l~~~~~~~i~~~~~~~~~~~d~~~~~~v~~~lg~~~p~~~~~~~~~~~---~~~~s~~~~~~~~~tl-~-grKV  537 (715)
T 1sy7_A          463 NAFGFELDHCEDPVVYGRMVQRLADIDLGLAQTIAEMVGGEAPTTTNHPNHGRK---TINLSQTEFPPATPTI-K-SRRV  537 (715)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHTTTCHHHHHHHHHHHCSCCCSCCSSCCCCCC---CSSCSGGGCCCSSSCC-T-TCEE
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCCHHHCCCCCCCC-C-CCEE
T ss_conf             999998628995899999999998629999999999749999987778998888---9773400047766345-6-7679


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             57877677659988999999863797766099989999999999974857993
Q gi|254780144|r   73 AVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVEL  125 (126)
Q Consensus        73 ~vIK~vR~it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~Vei  125 (126)
                      .|+                        +-.|....|+..++..|+++|+.|.|
T Consensus       538 aIL------------------------vadGfEe~E~~~~~~~L~~aG~~V~v  566 (715)
T 1sy7_A          538 AII------------------------IADGYDNVAYDAAYAAISANQAIPLV  566 (715)
T ss_dssp             EEE------------------------CCTTBCHHHHHHHHHHHHHTTCEEEE
T ss_pred             EEE------------------------ECCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             998------------------------16873489999999999977996799


No 14 
>1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=57.29  E-value=10  Score=17.78  Aligned_cols=38  Identities=24%  Similarity=0.308  Sum_probs=27.2

Q ss_pred             CHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHH
Q ss_conf             33578776776599889999998637977660999899999999
Q gi|254780144|r   71 KIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKK  114 (126)
Q Consensus        71 Ki~vIK~vR~it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~  114 (126)
                      -.+.||.+|..||.|+++.|+..+.+..      +-+.|.+|-.
T Consensus         4 ta~lik~LR~~Tga~~~~CKkAL~~~~g------D~e~A~~~Lr   41 (282)
T 1efu_B            4 TASLVKELRERTGAGMMDCKKALTEANG------DIELAIENMR   41 (282)
T ss_dssp             CHHHHHHHHHHHCCCHHHHHHHHHHTTT------CHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHCCC------CHHHHHHHHH
T ss_conf             8999999998869869999999998589------8999999999


No 15 
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=36.16  E-value=20  Score=15.99  Aligned_cols=16  Identities=19%  Similarity=0.418  Sum_probs=13.5

Q ss_pred             HHHHHHHHHCCCEEEE
Q ss_conf             9999999974857993
Q gi|254780144|r  110 NEMKKKLEDAGATVEL  125 (126)
Q Consensus       110 E~ik~~Le~aGa~Vei  125 (126)
                      +..+.++|.+|++|+|
T Consensus       131 ~sA~ekIE~aGG~V~l  146 (148)
T 2zkr_l          131 RRAEEKIKSVGGACVL  146 (148)
T ss_dssp             HHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHCCCEEEE
T ss_conf             8999999986988999


No 16 
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=31.92  E-value=7.8  Score=18.52  Aligned_cols=17  Identities=12%  Similarity=0.001  Sum_probs=8.1

Q ss_pred             HCCHHHHHHHHHHHHHH
Q ss_conf             09999999999999999
Q gi|254780144|r   13 SLTLIEAAELSKRLEKE   29 (126)
Q Consensus        13 ~LTllE~~eLv~~leek   29 (126)
                      ++|-.++.++++.+-+.
T Consensus        15 ~~~~~~~~~~v~~~~~~   31 (90)
T 1mul_A           15 ELSKTQAKAALESTLAA   31 (90)
T ss_dssp             TCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             97999999999999999


No 17 
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=30.40  E-value=28  Score=15.18  Aligned_cols=16  Identities=44%  Similarity=0.709  Sum_probs=12.6

Q ss_pred             HHHHHHHHHCCCEEEE
Q ss_conf             9999999974857993
Q gi|254780144|r  110 NEMKKKLEDAGATVEL  125 (126)
Q Consensus       110 E~ik~~Le~aGa~Vei  125 (126)
                      +..+.++|.+|++|+|
T Consensus       128 ~sA~ekIE~aGG~v~l  143 (165)
T 1vq8_L          128 EGAREKVEGAGGSVEL  143 (165)
T ss_dssp             HHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHCCCEEEE
T ss_conf             9999999984998999


No 18 
>1hue_A HU protein; DNA-binding; NMR {Geobacillus stearothermophilus} SCOP: a.55.1.1 PDB: 1huu_A
Probab=29.84  E-value=10  Score=17.85  Aligned_cols=18  Identities=11%  Similarity=0.060  Sum_probs=10.7

Q ss_pred             HCCHHHHHHHHHHHHHHH
Q ss_conf             099999999999999993
Q gi|254780144|r   13 SLTLIEAAELSKRLEKEW   30 (126)
Q Consensus        13 ~LTllE~~eLv~~leekf   30 (126)
                      +||--++.++++.+-+..
T Consensus        15 ~l~~~~~~~~v~~~~~~i   32 (90)
T 1hue_A           15 GLSKKDATKAVDAVFDSI   32 (90)
T ss_dssp             CCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
T ss_conf             989999999999999999


No 19 
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=25.40  E-value=31  Score=14.93  Aligned_cols=66  Identities=12%  Similarity=0.166  Sum_probs=38.1

Q ss_pred             CCEEEEEECCCCCCCHHHHHHH-HH-H--CCCCHHHHH-HHHHH-------CCHHHHHCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             3115777437755433578776-77-6--599889999-99863-------79776609998999999999997485799
Q gi|254780144|r   57 EFEVVLKGFDDPKKKIAVIKEV-RA-I--TDLGLKEAK-ELVES-------APKSLKTGLSKDEANEMKKKLEDAGATVE  124 (126)
Q Consensus        57 ~fdV~L~~~~~~~~Ki~vIK~v-R~-i--t~LgLkEAK-~lVe~-------~P~~ike~v~keeAE~ik~~Le~aGa~Ve  124 (126)
                      +-.+.|.+-+  +-|+.-+..+ ++ +  -|++++--. .-.+.       -.-.|++|+++|.|-+|-+.+.+.+-+|.
T Consensus        45 ~~~i~l~a~~--e~kl~~v~diL~~kl~KR~i~~k~l~~~~~e~~sg~~~rq~i~lk~GI~~e~AKkI~k~IKdsklKVq  122 (163)
T 1in0_A           45 NETIKITTES--DFQLEQLIEILIGSCIKRGIEHSSLDIPAESEHHGKLYSKEIKLKQGIETEMAKKITKLVKDSKIKVQ  122 (163)
T ss_dssp             TTEEEEEESC--HHHHHHHHHHHHHHHHHTTCCGGGEECCSSCEEETTEEEEEEEECCSCCHHHHHHHHHHHHHHTCSEE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHCCCCCE
T ss_conf             7369997097--99999999999999861699954322356422478718998647522488899999999971388405


No 20 
>3jyw_V 60S ribosomal protein L28; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_V
Probab=22.59  E-value=34  Score=14.64  Aligned_cols=16  Identities=38%  Similarity=0.549  Sum_probs=13.0

Q ss_pred             HHHHHHHHHCCCEEEE
Q ss_conf             9999999974857993
Q gi|254780144|r  110 NEMKKKLEDAGATVEL  125 (126)
Q Consensus       110 E~ik~~Le~aGa~Vei  125 (126)
                      +..+.++|.+|++|++
T Consensus       126 ~sA~ekIE~aGG~v~~  141 (142)
T 3jyw_V          126 KLAEEKIRAAGGVVEL  141 (142)
T ss_dssp             HHHHHHHHHHTCCEEC
T ss_pred             HHHHHHHHHCCCEEEE
T ss_conf             8999999983998996


No 21 
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=21.77  E-value=13  Score=17.10  Aligned_cols=17  Identities=0%  Similarity=-0.060  Sum_probs=10.2

Q ss_pred             HCCHHHHHHHHHHHHHH
Q ss_conf             09999999999999999
Q gi|254780144|r   13 SLTLIEAAELSKRLEKE   29 (126)
Q Consensus        13 ~LTllE~~eLv~~leek   29 (126)
                      ++|--++..+++.+-+.
T Consensus        15 ~~s~~~~~~~v~~~~~~   31 (90)
T 1b8z_A           15 GAKKKDVKLILDTILET   31 (90)
T ss_dssp             TCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             99999999999999999


Done!