HHsearch alignment for GI: 254780145 and conserved domain: cd05797
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=100.00 E-value=8.7e-41 Score=290.31 Aligned_cols=156 Identities=39% Similarity=0.659 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 74899999999999995089799998279988999999999965695899861579999973137421200157843787
Q gi|254780145|r 2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTSIRGISDLFVGQSLIV 81 (172)
Q Consensus 2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~~a~~ 81 (172)
T Consensus 1 ~r~~K~~~v~~l~~~~~~s~~i~~~~y~gl~v~~~~~lR~~l~~~~~~~kVvKNtL~~~Al~~t~~~~l~~~l~G~~a~~ 80 (157)
T cd05797 1 NREKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGTGFEDLDDLLKGPTAIA 80 (157)
T ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCHHHHCCCCEEEE
T ss_conf 97889999999999998699799997689968999999999997698699961499999986158531255366776999
Q ss_pred EE-CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 62-23421578878886410001223210241107989999984699989999999999998999999999776879
Q gi|254780145|r 82 YS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQ 157 (172)
Q Consensus 82 f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~~ 157 (172)
T Consensus 81 f~~ed~~~~aK~i~~f~K~~~~~~~~gg~~eg~~l~~~~i~~lakLPs~eel~a~l~~~l~~p~~~l~~~L~~~~~~ 157 (157)
T cd05797 81 FSEEDPVAAAKVLKDFAKENKKLEIKGGVVEGKVLDAEEVKALAKLPSREELLAQLLGLLQAPATKLVRVLNAPASK 157 (157)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCEEEEEECCEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 93688538899999998752552012333257132899999997599999999999999998999999997366689