HHsearch alignment of GI: 254780145 and MMDB domain: 2zkr_g_
>2zkr_g (g:) 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.84 E-value=2e-22 Score=168.43 Aligned_cols=157 Identities=11% Similarity=0.128 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC-----CCCCCCCCCCCC
Q ss_conf 489999999999999508979999827998899999999996569589986157999997313-----742120015784
Q gi|254780145|r 3 RQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT-----SIRGISDLFVGQ 77 (172)
Q Consensus 3 r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~-----~~~~l~~~l~G~ 77 (172)
|++|+++|+++++.|++++.+++++|.|+++++++++|+.||. +++++|+||||+|+|++++ +++.+.++++|+
T Consensus 7 ~e~K~~~v~~l~e~l~~~~~v~iv~~~gl~s~ql~~iR~~lr~-~a~l~vgKNtL~r~AL~~~~~e~~~~~~L~~~l~G~ 85 (317)
T 2zkr_g 7 ATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRG-KAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGN 85 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHCCC
T ss_conf 7899999999999998699899998079877999999999756-846999533399999875013452089999984678
Q ss_pred EEEEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 378762-2342157887888641000122321024110798999998469998999999999999899999999977687
Q gi|254780145|r 78 SLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQT 156 (172)
Q Consensus 78 ~a~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~ 156 (172)
++++|+ +||..++|++.+|.+.++ .++..++++++...+.+|++++++.++++.|+.|.....+.+.....
T Consensus 86 ~gliFT~~dp~~v~k~l~~f~~~~~--------ar~g~ia~~dV~i~ag~t~~~~~~~~~l~~L~iPtki~~G~I~i~~~ 157 (317)
T 2zkr_g 86 VGFVFTKEDLTEIRDMLLANKVPAA--------ARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSD 157 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEECCCCHHHHHHHHHCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCEEEEECC
T ss_conf 3899970570789999997046001--------34556789737975898888987266898659981762766999416
Q ss_pred -HHHHHHHHHHHH
Q ss_conf -999999999997
Q gi|254780145|r 157 -QVVRAISAFVDK 168 (172)
Q Consensus 157 -~l~~~L~~~~~k 168 (172)
.++...+.+..+
T Consensus 158 ~~v~k~G~~v~~~ 170 (317)
T 2zkr_g 158 VQLIKTGDKVGAS 170 (317)
T ss_dssp -------------
T ss_pred EEEECCCCCCCHH
T ss_conf 2896589885899