Query         gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 172
No_of_seqs    125 out of 1666
Neff          6.9 
Searched_HMMs 33803
Date          Mon May 23 05:03:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780145.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3i8i_Y Elongation Complex Of T 100.0 8.5E-39 2.5E-43  276.7 -16.9  169    1-170     1-172 (173)
  2 >3a1y_G Acidic ribosomal prote 100.0 5.3E-33 1.6E-37  238.4   4.8  170    2-171     4-186 (206)
  3 >1zav_A 50S ribosomal protein   99.9 1.4E-25 4.1E-30  189.4  14.0  127    1-127     3-136 (136)
  4 >1vq8_G Acidic ribosomal prote  99.9 2.1E-26 6.2E-31  194.8   3.8  167    2-169    12-181 (348)
  5 >2zkr_g 60S acidic ribosomal p  99.8   2E-22   6E-27  168.4   0.0  157    3-168     7-170 (317)
  6 >3jyw_8 60S ribosomal protein   99.8 4.5E-20 1.3E-24  152.9   3.1  111    2-115     2-118 (118)
  7 >1zav_A 50S ribosomal protein   98.8 8.3E-09 2.5E-13   78.4   6.4   44  128-171     1-44  (44)
  8 >2orm_A Probable tautomerase H  32.7      33 0.00097   15.0   2.7   19    1-19     14-32  (50)
  9 >2z6i_A Trans-2-enoyl-ACP redu  31.4      20  0.0006   16.3   1.2   33   44-76      9-45  (49)
 10 >1dzf_A DNA-directed RNA polym  22.5      49  0.0015   13.8   2.4   54   75-128    23-77  (92)

No 1  
>3i8i_Y Elongation Complex Of The 70s Ribosome With Three Trnas And Mrna. This Entry 3i8i Contains 50s Ribosomal Subnit. {Thermus thermophilus} (Y:)
Probab=100.00  E-value=8.5e-39  Score=276.72  Aligned_cols=169  Identities=24%  Similarity=0.480  Sum_probs=161.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC-EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf             974899999999999995089-7999982799889999999999656958998615799999731374212001578437
Q gi|254780145|r    1 MNRQGKSVEISELSKIFSSSG-SIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTSIRGISDLFVGQSL   79 (172)
Q Consensus         1 m~r~~K~~~V~~l~~~l~~s~-~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~~a   79 (172)
                      |+|++|+++|+++++.|++++ ++++++|+||+++++++||++||+.|++++|+||||+++|+++++++.+ +.|+|||+
T Consensus         1 m~r~~K~~~v~~l~~~l~~s~~~i~i~~~~gl~~~~~~~lR~~lr~~~~~~~v~KNtl~k~Al~~t~~e~l-~~l~G~~a   79 (173)
T 3i8i_Y            1 MPNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELGLPEL-DGLQGPSA   79 (173)
T ss_dssp             CCCTTSTHHHHHTTSSTTSSCSSBCCCCCSCCSCSSSCSCSCSSSSCCSSCCCCTTHHHHHHCCCSSCCCC-CBTCCCSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCHH-HHCCCCEE
T ss_conf             98588999999999999841898899962387889999999999867967998653999999850683002-32148658


Q ss_pred             EEEECCCCHHHHHHHHHHHH--CCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87622342157887888641--0001223210241107989999984699989999999999998999999999776879
Q gi|254780145|r   80 IVYSDSPVIAPKISVSFSND--NNEFRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQ  157 (172)
Q Consensus        80 ~~f~~d~~~~aK~~~~f~k~--~~~l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~~  157 (172)
                      ++|++|++.+++.+.+|.++  ++.+.++||++||++++.+++..|++|||+++++++++|+|++|+++++++|++++++
T Consensus        80 ~~f~~~~~~~~~~~~~~~~~~k~~~~~~~gg~~~g~il~~~~i~~la~lPs~~~l~~~l~~~l~~~~~~l~~~l~~~~~~  159 (173)
T 3i8i_Y           80 VVFYEDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTAKDVEALAELPTMDELRAELVGVLQAPMAELVGVLGGVARE  159 (173)
T ss_dssp             CCCCCCSCHHHHHHTTSCCCSSCSSSCCCCCCCBSSSCCBCCHHHHSSSCCCSTTSTTTSSCSSCC--------------
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCCHHHEEEECCCEEECHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99865863237999999984166402420022076154687776541577468999999998744488999998650899


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999762
Q gi|254780145|r  158 VVRAISAFVDKNQ  170 (172)
Q Consensus       158 l~~~L~~~~~k~e  170 (172)
                      |+++|+++.+|+|
T Consensus       160 la~~L~~~~~kke  172 (173)
T 3i8i_Y          160 LVGILEAYAEKKA  172 (173)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999998621


No 2  
>>3a1y_G Acidic ribosomal protein P0; stalk, ribosomal protein,helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii} (G:1-206)
Probab=99.97  E-value=5.3e-33  Score=238.38  Aligned_cols=170  Identities=14%  Similarity=0.107  Sum_probs=160.3

Q ss_pred             CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCC-------CCCCCCCC
Q ss_conf             74899999999999995089799998279988999999999965695899861579999973137-------42120015
Q gi|254780145|r    2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTS-------IRGISDLF   74 (172)
Q Consensus         2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~-------~~~l~~~l   74 (172)
                      +|++|+++|+++++.|++++.+++++|+|++++++++||++||++|++++|+||||+++|+++++       ++.+.++|
T Consensus         4 ~~~~K~~~v~~l~~~l~~~~~v~vv~~~gl~~~~l~~lR~~lr~~~~~~~v~KNtL~~~Al~~~~~~~~~~~~~~l~~~l   83 (206)
T 3a1y_G            4 VAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYI   83 (206)
T ss_dssp             SCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             38999999999999997699899998379877999999999985697899974689999998431100222178999873


Q ss_pred             CCCEEEEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-----HH
Q ss_conf             784378762-234215788788864100012232102411079899999846999899999999999989999-----99
Q gi|254780145|r   75 VGQSLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATR-----LV  148 (172)
Q Consensus        75 ~G~~a~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~-----l~  148 (172)
                      +||++++|+ +||..++|++.+|.++++.+.+++|.+||.+++.+++..+++|||++++++++++++++|++.     ++
T Consensus        84 ~G~~~lifs~~d~~~~~K~~~~f~k~~~~~~~~~a~~d~~v~~~~~~~~~a~lps~~~~~~~~~~~~~~~i~~~~~~~la  163 (206)
T 3a1y_G           84 DRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVL  163 (206)
T ss_dssp             CTTEEEEEESSCHHHHHHHHHHCCCC------------------------------------------------------
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCEEECCEEEEECCEEEE
T ss_conf             68748999458979999999862673445555778852898178888899854578987699817708789993045997


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99977687999999999997626
Q gi|254780145|r  149 RLLGTPQTQVVRAISAFVDKNQQ  171 (172)
Q Consensus       149 ~~L~~~~~~l~~~L~~~~~k~ee  171 (172)
                      ...+.+.++++++|+++.+++++
T Consensus       164 ~~~~~~~~~~a~~L~~l~~k~~~  186 (206)
T 3a1y_G          164 KAGEVITPELANILNALGIQPLE  186 (206)
T ss_dssp             -------------------CCCC
T ss_pred             CCCCCCCHHHHHHHHHCCCCCEE
T ss_conf             47986489999999972988468


No 3  
>>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} (A:1-136)
Probab=99.94  E-value=1.4e-25  Score=189.37  Aligned_cols=127  Identities=31%  Similarity=0.605  Sum_probs=120.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHH---CCCEEEEECHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             974899999999999995089799998279988999999999965---69589986157999997313742120015784
Q gi|254780145|r    1 MNRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMRE---AGGGVKVAKNRLVKIAIRDTSIRGISDLFVGQ   77 (172)
Q Consensus         1 m~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~---~~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~   77 (172)
                      |+|++|+++|+++++.|++++.+++++|+|++++++++||+.||+   .++.++|+||+|+++|+++++++.+.++|+||
T Consensus         3 ~~~~~K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~lr~~~~~~~~~~v~kn~l~~~Al~~t~~~~l~~~l~G~   82 (136)
T 1zav_A            3 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGP   82 (136)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf             76899999999999999759979999748998899999999998624698089997059999998657842125665067


Q ss_pred             EEEEEE--CCCCHHHHHHHHHHHHC--CHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf             378762--23421578878886410--001223210241107989999984699
Q gi|254780145|r   78 SLIVYS--DSPVIAPKISVSFSNDN--NEFRVLGGVVEKGVLNQDSIKQIASLP  127 (172)
Q Consensus        78 ~a~~f~--~d~~~~aK~~~~f~k~~--~~l~i~gg~~eg~~l~~~~i~~lakLP  127 (172)
                      ++++|+  +||..++|++.+|.+++  +.+.++||+++|++++++++..||+||
T Consensus        83 ~~lift~~~~~~~~~K~i~~~~k~~k~~~~~~~g~~~~~~v~~~~~~~~la~lP  136 (136)
T 1zav_A           83 TAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLP  136 (136)
T ss_dssp             EEEEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHHHHHHTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCC
T ss_conf             634788626713443577777664034444022688638665889988985399


No 4  
>>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (G:)
Probab=99.92  E-value=2.1e-26  Score=194.79  Aligned_cols=167  Identities=14%  Similarity=0.083  Sum_probs=157.0

Q ss_pred             CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHH--HCCCCCCCCCCCCCEE
Q ss_conf             74899999999999995089799998279988999999999965695899861579999973--1374212001578437
Q gi|254780145|r    2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIR--DTSIRGISDLFVGQSL   79 (172)
Q Consensus         2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~--~~~~~~l~~~l~G~~a   79 (172)
                      +|++|+++|+++++.|++++.+++++|.|+++++++++|+.||. ++.++|+||||+++|++  +++++.|.++|+|+++
T Consensus        12 ~~e~K~~~v~~l~e~l~~~~~v~iv~~~gi~s~ql~~lR~~Lr~-~~~l~v~KNTL~r~ALe~~~~~~~~L~~~l~G~~a   90 (348)
T 1vq8_G           12 IPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHG-TAELRVSRNTLLERALDDVDDGLEDLNGYITGQVG   90 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHTC-----------------
T ss_pred             CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHHHCCCCHHHHHHHHCCCEE
T ss_conf             72889999999999997699899998279878999999999655-86799961189999998719888999988377759


Q ss_pred             EEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8762-234215788788864100012232102411079899999846999899999999999989999999997768799
Q gi|254780145|r   80 IVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQV  158 (172)
Q Consensus        80 ~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~~l  158 (172)
                      ++|+ +||..+.|++.+|.+.++.....+|.+|+.+.+.+.+..+++|||+.++++++++++++|+..+...+.....+.
T Consensus        91 liFT~~dp~~v~k~l~~~~~~~~ak~g~iA~~Dv~i~~g~t~~~p~~l~s~~q~lgi~t~i~~G~I~i~~~~~v~~~g~~  170 (348)
T 1vq8_G           91 LIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEE  170 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCEEECCCEEEEECCEEEECCCCC
T ss_conf             99966887899999886336322234466785189847766889985378998759973751886998303599737999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999976
Q gi|254780145|r  159 VRAISAFVDKN  169 (172)
Q Consensus       159 ~~~L~~~~~k~  169 (172)
                      ++..++...++
T Consensus       171 v~~~~A~lLk~  181 (348)
T 1vq8_G          171 VSQELSNVLNE  181 (348)
T ss_dssp             -----------
T ss_pred             CCHHHHHHHHH
T ss_conf             68999999996


No 5  
>>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (g:)
Probab=99.84  E-value=2e-22  Score=168.43  Aligned_cols=157  Identities=11%  Similarity=0.128  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC-----CCCCCCCCCCCC
Q ss_conf             489999999999999508979999827998899999999996569589986157999997313-----742120015784
Q gi|254780145|r    3 RQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT-----SIRGISDLFVGQ   77 (172)
Q Consensus         3 r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~-----~~~~l~~~l~G~   77 (172)
                      |++|+++|+++++.|++++.+++++|.|+++++++++|+.||. +++++|+||||+|+|++++     +++.+.++++|+
T Consensus         7 ~e~K~~~v~~l~e~l~~~~~v~iv~~~gl~s~ql~~iR~~lr~-~a~l~vgKNtL~r~AL~~~~~e~~~~~~L~~~l~G~   85 (317)
T 2zkr_g            7 ATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRG-KAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGN   85 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHCCC
T ss_conf             7899999999999998699899998079877999999999756-846999533399999875013452089999984678


Q ss_pred             EEEEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             378762-2342157887888641000122321024110798999998469998999999999999899999999977687
Q gi|254780145|r   78 SLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQT  156 (172)
Q Consensus        78 ~a~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~  156 (172)
                      ++++|+ +||..++|++.+|.+.++        .++..++++++...+.+|++++++.++++.|+.|.....+.+.....
T Consensus        86 ~gliFT~~dp~~v~k~l~~f~~~~~--------ar~g~ia~~dV~i~ag~t~~~~~~~~~l~~L~iPtki~~G~I~i~~~  157 (317)
T 2zkr_g           86 VGFVFTKEDLTEIRDMLLANKVPAA--------ARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSD  157 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEECCCCHHHHHHHHHCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCEEEEECC
T ss_conf             3899970570789999997046001--------34556789737975898888987266898659981762766999416


Q ss_pred             -HHHHHHHHHHHH
Q ss_conf             -999999999997
Q gi|254780145|r  157 -QVVRAISAFVDK  168 (172)
Q Consensus       157 -~l~~~L~~~~~k  168 (172)
                       .++...+.+..+
T Consensus       158 ~~v~k~G~~v~~~  170 (317)
T 2zkr_g          158 VQLIKTGDKVGAS  170 (317)
T ss_dssp             -------------
T ss_pred             EEEECCCCCCCHH
T ss_conf             2896589885899


No 6  
>>3jyw_8 60S ribosomal protein LP0; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (8:)
Probab=99.78  E-value=4.5e-20  Score=152.88  Aligned_cols=111  Identities=21%  Similarity=0.256  Sum_probs=100.7

Q ss_pred             CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCC-----CCCCCCCCCC
Q ss_conf             74899999999999995089799998279988999999999965695899861579999973137-----4212001578
Q gi|254780145|r    2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTS-----IRGISDLFVG   76 (172)
Q Consensus         2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~-----~~~l~~~l~G   76 (172)
                      +|++|+++|+++++.+++++.+++++|+|+++.+++++|+.||+ +++++|+||||+++|+++++     ++.+.++|.|
T Consensus         2 ~r~~K~~~v~~l~~~l~~~~~v~i~~~~gl~~~~l~~lR~~lr~-~~~~~v~KNtl~~~Al~~~~~~~~~~~~l~~~l~G   80 (118)
T 3jyw_8            2 IREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRG-RAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKG   80 (118)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCCCCCBCCSCCTHHHHHHHTTSCS-SCCCSCCCHHHHHHHHHSCCSSSCCSTTCTTTCSS
T ss_pred             CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHCCC
T ss_conf             50889999999999998699899997079867999999985334-86699728899999998522125226778875578


Q ss_pred             CEEEEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCC
Q ss_conf             4378762-23421578878886410001223210241107
Q gi|254780145|r   77 QSLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVL  115 (172)
Q Consensus        77 ~~a~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~eg~~l  115 (172)
                      |++++|+ +||..++|++.+|.+.++  ...|++.+++++
T Consensus        81 ~~ai~ft~~dp~~v~k~~~~f~k~~~--ak~G~ia~~~vy  118 (118)
T 3jyw_8           81 YVGFVFTNEPLTEIKNVIVSNRVAAP--ARAGAVAPEDIW  118 (118)
T ss_dssp             SBCCCCSSSCHHHHHHHHHHHTTTTT--CCCCCBTTBCCC
T ss_pred             CEEEEEECCCHHHHHHHHHHHCCCCC--CCCCCCCCCCCC
T ss_conf             87999979998999999998388666--668870674249


No 7  
>>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} (A:137-180)
Probab=98.82  E-value=8.3e-09  Score=78.40  Aligned_cols=44  Identities=20%  Similarity=0.247  Sum_probs=43.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98999999999999899999999977687999999999997626
Q gi|254780145|r  128 DLEGIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDKNQQ  171 (172)
Q Consensus       128 s~~el~a~lv~~l~~p~~~l~~~L~~~~~~l~~~L~~~~~k~ee  171 (172)
                      ||||++|+++|.+++|+++|+++|++++++++++|+++.||+||
T Consensus         1 Sre~Lla~llg~m~AP~~~lv~~L~~~~~klv~~L~Ai~~kKe~   44 (44)
T 1zav_A            1 SKEELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEKKSE   44 (44)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999998689999999972799999999999987259


No 8  
>>2orm_A Probable tautomerase HP0924; homohexamer, 4-OT, 4-oxalocrotonate tautomerase homologue, isomerase; 2.10A {Helicobacter pylori J99} (A:1-50)
Probab=32.67  E-value=33  Score=14.95  Aligned_cols=19  Identities=16%  Similarity=0.170  Sum_probs=15.1

Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q ss_conf             9748999999999999950
Q gi|254780145|r    1 MNRQGKSVEISELSKIFSS   19 (172)
Q Consensus         1 m~r~~K~~~V~~l~~~l~~   19 (172)
                      .|+++|.++|+++.+.+.+
T Consensus        14 ~T~EQK~~li~~vT~~l~~   32 (50)
T 2orm_A           14 PTNEQKQQLIEGVSDLMVK   32 (50)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999


No 9  
>>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* (A:215-263)
Probab=31.44  E-value=20  Score=16.35  Aligned_cols=33  Identities=15%  Similarity=0.028  Sum_probs=23.6

Q ss_pred             HHCCCEEEEECHHHHHHHHH----HCCCCCCCCCCCC
Q ss_conf             65695899861579999973----1374212001578
Q gi|254780145|r   44 REAGGGVKVAKNRLVKIAIR----DTSIRGISDLFVG   76 (172)
Q Consensus        44 r~~~~~~~VvKNtL~k~A~~----~~~~~~l~~~l~G   76 (172)
                      |..|.-++|.||.+.+..++    ++.++.+..+..|
T Consensus         9 r~~GhPvR~lkNk~tr~~~~lE~~ga~~eele~l~~G   45 (49)
T 2z6i_A            9 QHFGHAVRAIKNQLTRDFELAEKDAFKQEDPDLEIFE   45 (49)
T ss_dssp             GGGTCCEEEECSHHHHHHHHHHHHHHTC---CCHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf             2448854655768999999742133334564304798


No 10 
>>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} (A:53-144)
Probab=22.55  E-value=49  Score=13.78  Aligned_cols=54  Identities=20%  Similarity=0.372  Sum_probs=34.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHH-CCCCCCCHHHHHHHHCCCC
Q ss_conf             78437876223421578878886410001223210-2411079899999846999
Q gi|254780145|r   75 VGQSLIVYSDSPVIAPKISVSFSNDNNEFRVLGGV-VEKGVLNQDSIKQIASLPD  128 (172)
Q Consensus        75 ~G~~a~~f~~d~~~~aK~~~~f~k~~~~l~i~gg~-~eg~~l~~~~i~~lakLPs  128 (172)
                      .|+..+.|++|+....|.+..|...-+.-.+..|+ +-..-+++.--..+...|+
T Consensus        23 ~~~i~V~F~~~~~Vgvk~ir~~~~~~~~en~~r~IlV~q~~itp~Akk~i~~~~~   77 (92)
T 1dzf_A           23 MGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPP   77 (92)
T ss_dssp             CCCEEEEECSSSEECHHHHHHHHHHHHHTTCSEEEEEESSEECHHHHTTTTSSTT
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC
T ss_conf             8739999789985358999999999975676547999768889799999975688


Done!