Query gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 172 No_of_seqs 125 out of 1666 Neff 6.9 Searched_HMMs 33803 Date Mon May 23 05:03:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780145.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3i8i_Y Elongation Complex Of T 100.0 8.5E-39 2.5E-43 276.7 -16.9 169 1-170 1-172 (173) 2 >3a1y_G Acidic ribosomal prote 100.0 5.3E-33 1.6E-37 238.4 4.8 170 2-171 4-186 (206) 3 >1zav_A 50S ribosomal protein 99.9 1.4E-25 4.1E-30 189.4 14.0 127 1-127 3-136 (136) 4 >1vq8_G Acidic ribosomal prote 99.9 2.1E-26 6.2E-31 194.8 3.8 167 2-169 12-181 (348) 5 >2zkr_g 60S acidic ribosomal p 99.8 2E-22 6E-27 168.4 0.0 157 3-168 7-170 (317) 6 >3jyw_8 60S ribosomal protein 99.8 4.5E-20 1.3E-24 152.9 3.1 111 2-115 2-118 (118) 7 >1zav_A 50S ribosomal protein 98.8 8.3E-09 2.5E-13 78.4 6.4 44 128-171 1-44 (44) 8 >2orm_A Probable tautomerase H 32.7 33 0.00097 15.0 2.7 19 1-19 14-32 (50) 9 >2z6i_A Trans-2-enoyl-ACP redu 31.4 20 0.0006 16.3 1.2 33 44-76 9-45 (49) 10 >1dzf_A DNA-directed RNA polym 22.5 49 0.0015 13.8 2.4 54 75-128 23-77 (92) No 1 >3i8i_Y Elongation Complex Of The 70s Ribosome With Three Trnas And Mrna. This Entry 3i8i Contains 50s Ribosomal Subnit. {Thermus thermophilus} (Y:) Probab=100.00 E-value=8.5e-39 Score=276.72 Aligned_cols=169 Identities=24% Similarity=0.480 Sum_probs=161.5 Q ss_pred CCHHHHHHHHHHHHHHHHHCC-EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEE Q ss_conf 974899999999999995089-7999982799889999999999656958998615799999731374212001578437 Q gi|254780145|r 1 MNRQGKSVEISELSKIFSSSG-SIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTSIRGISDLFVGQSL 79 (172) Q Consensus 1 m~r~~K~~~V~~l~~~l~~s~-~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~~a 79 (172) |+|++|+++|+++++.|++++ ++++++|+||+++++++||++||+.|++++|+||||+++|+++++++.+ +.|+|||+ T Consensus 1 m~r~~K~~~v~~l~~~l~~s~~~i~i~~~~gl~~~~~~~lR~~lr~~~~~~~v~KNtl~k~Al~~t~~e~l-~~l~G~~a 79 (173) T 3i8i_Y 1 MPNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELGLPEL-DGLQGPSA 79 (173) T ss_dssp CCCTTSTHHHHHTTSSTTSSCSSBCCCCCSCCSCSSSCSCSCSSSSCCSSCCCCTTHHHHHHCCCSSCCCC-CBTCCCSS T ss_pred CCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCHH-HHCCCCEE T ss_conf 98588999999999999841898899962387889999999999867967998653999999850683002-32148658 Q ss_pred EEEECCCCHHHHHHHHHHHH--CCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 87622342157887888641--0001223210241107989999984699989999999999998999999999776879 Q gi|254780145|r 80 IVYSDSPVIAPKISVSFSND--NNEFRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQ 157 (172) Q Consensus 80 ~~f~~d~~~~aK~~~~f~k~--~~~l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~~ 157 (172) ++|++|++.+++.+.+|.++ ++.+.++||++||++++.+++..|++|||+++++++++|+|++|+++++++|++++++ T Consensus 80 ~~f~~~~~~~~~~~~~~~~~~k~~~~~~~gg~~~g~il~~~~i~~la~lPs~~~l~~~l~~~l~~~~~~l~~~l~~~~~~ 159 (173) T 3i8i_Y 80 VVFYEDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTAKDVEALAELPTMDELRAELVGVLQAPMAELVGVLGGVARE 159 (173) T ss_dssp CCCCCCSCHHHHHHTTSCCCSSCSSSCCCCCCCBSSSCCBCCHHHHSSSCCCSTTSTTTSSCSSCC-------------- T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCHHHEEEECCCEEECHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99865863237999999984166402420022076154687776541577468999999998744488999998650899 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999762 Q gi|254780145|r 158 VVRAISAFVDKNQ 170 (172) Q Consensus 158 l~~~L~~~~~k~e 170 (172) |+++|+++.+|+| T Consensus 160 la~~L~~~~~kke 172 (173) T 3i8i_Y 160 LVGILEAYAEKKA 172 (173) T ss_dssp ------------- T ss_pred HHHHHHHHHHHHC T ss_conf 9999999998621 No 2 >>3a1y_G Acidic ribosomal protein P0; stalk, ribosomal protein,helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii} (G:1-206) Probab=99.97 E-value=5.3e-33 Score=238.38 Aligned_cols=170 Identities=14% Similarity=0.107 Sum_probs=160.3 Q ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCC-------CCCCCCCC Q ss_conf 74899999999999995089799998279988999999999965695899861579999973137-------42120015 Q gi|254780145|r 2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTS-------IRGISDLF 74 (172) Q Consensus 2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~-------~~~l~~~l 74 (172) +|++|+++|+++++.|++++.+++++|+|++++++++||++||++|++++|+||||+++|+++++ ++.+.++| T Consensus 4 ~~~~K~~~v~~l~~~l~~~~~v~vv~~~gl~~~~l~~lR~~lr~~~~~~~v~KNtL~~~Al~~~~~~~~~~~~~~l~~~l 83 (206) T 3a1y_G 4 VAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYI 83 (206) T ss_dssp SCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCC T ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 38999999999999997699899998379877999999999985697899974689999998431100222178999873 Q ss_pred CCCEEEEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-----HH Q ss_conf 784378762-234215788788864100012232102411079899999846999899999999999989999-----99 Q gi|254780145|r 75 VGQSLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATR-----LV 148 (172) Q Consensus 75 ~G~~a~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~-----l~ 148 (172) +||++++|+ +||..++|++.+|.++++.+.+++|.+||.+++.+++..+++|||++++++++++++++|++. ++ T Consensus 84 ~G~~~lifs~~d~~~~~K~~~~f~k~~~~~~~~~a~~d~~v~~~~~~~~~a~lps~~~~~~~~~~~~~~~i~~~~~~~la 163 (206) T 3a1y_G 84 DRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVL 163 (206) T ss_dssp CTTEEEEEESSCHHHHHHHHHHCCCC------------------------------------------------------ T ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCEEECCEEEEECCEEEE T ss_conf 68748999458979999999862673445555778852898178888899854578987699817708789993045997 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99977687999999999997626 Q gi|254780145|r 149 RLLGTPQTQVVRAISAFVDKNQQ 171 (172) Q Consensus 149 ~~L~~~~~~l~~~L~~~~~k~ee 171 (172) ...+.+.++++++|+++.+++++ T Consensus 164 ~~~~~~~~~~a~~L~~l~~k~~~ 186 (206) T 3a1y_G 164 KAGEVITPELANILNALGIQPLE 186 (206) T ss_dssp -------------------CCCC T ss_pred CCCCCCCHHHHHHHHHCCCCCEE T ss_conf 47986489999999972988468 No 3 >>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} (A:1-136) Probab=99.94 E-value=1.4e-25 Score=189.37 Aligned_cols=127 Identities=31% Similarity=0.605 Sum_probs=120.9 Q ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHH---CCCEEEEECHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 974899999999999995089799998279988999999999965---69589986157999997313742120015784 Q gi|254780145|r 1 MNRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMRE---AGGGVKVAKNRLVKIAIRDTSIRGISDLFVGQ 77 (172) Q Consensus 1 m~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~---~~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~ 77 (172) |+|++|+++|+++++.|++++.+++++|+|++++++++||+.||+ .++.++|+||+|+++|+++++++.+.++|+|| T Consensus 3 ~~~~~K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~lr~~~~~~~~~~v~kn~l~~~Al~~t~~~~l~~~l~G~ 82 (136) T 1zav_A 3 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGP 82 (136) T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSSS T ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHCCCCCHHHHHHHCC T ss_conf 76899999999999999759979999748998899999999998624698089997059999998657842125665067 Q ss_pred EEEEEE--CCCCHHHHHHHHHHHHC--CHHHHHHHHCCCCCCCHHHHHHHHCCC Q ss_conf 378762--23421578878886410--001223210241107989999984699 Q gi|254780145|r 78 SLIVYS--DSPVIAPKISVSFSNDN--NEFRVLGGVVEKGVLNQDSIKQIASLP 127 (172) Q Consensus 78 ~a~~f~--~d~~~~aK~~~~f~k~~--~~l~i~gg~~eg~~l~~~~i~~lakLP 127 (172) ++++|+ +||..++|++.+|.+++ +.+.++||+++|++++++++..||+|| T Consensus 83 ~~lift~~~~~~~~~K~i~~~~k~~k~~~~~~~g~~~~~~v~~~~~~~~la~lP 136 (136) T 1zav_A 83 TAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLP 136 (136) T ss_dssp EEEEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHHHHHHTCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCC T ss_conf 634788626713443577777664034444022688638665889988985399 No 4 >>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (G:) Probab=99.92 E-value=2.1e-26 Score=194.79 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=157.0 Q ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHH--HCCCCCCCCCCCCCEE Q ss_conf 74899999999999995089799998279988999999999965695899861579999973--1374212001578437 Q gi|254780145|r 2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIR--DTSIRGISDLFVGQSL 79 (172) Q Consensus 2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~--~~~~~~l~~~l~G~~a 79 (172) +|++|+++|+++++.|++++.+++++|.|+++++++++|+.||. ++.++|+||||+++|++ +++++.|.++|+|+++ T Consensus 12 ~~e~K~~~v~~l~e~l~~~~~v~iv~~~gi~s~ql~~lR~~Lr~-~~~l~v~KNTL~r~ALe~~~~~~~~L~~~l~G~~a 90 (348) T 1vq8_G 12 IPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHG-TAELRVSRNTLLERALDDVDDGLEDLNGYITGQVG 90 (348) T ss_dssp CCHHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHTC----------------- T ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHHHCCCCHHHHHHHHCCCEE T ss_conf 72889999999999997699899998279878999999999655-86799961189999998719888999988377759 Q ss_pred EEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8762-234215788788864100012232102411079899999846999899999999999989999999997768799 Q gi|254780145|r 80 IVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQV 158 (172) Q Consensus 80 ~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~~l 158 (172) ++|+ +||..+.|++.+|.+.++.....+|.+|+.+.+.+.+..+++|||+.++++++++++++|+..+...+.....+. T Consensus 91 liFT~~dp~~v~k~l~~~~~~~~ak~g~iA~~Dv~i~~g~t~~~p~~l~s~~q~lgi~t~i~~G~I~i~~~~~v~~~g~~ 170 (348) T 1vq8_G 91 LIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEE 170 (348) T ss_dssp -------------------------------------------------------------------------------- T ss_pred EEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCEEECCCEEEEECCEEEECCCCC T ss_conf 99966887899999886336322234466785189847766889985378998759973751886998303599737999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999976 Q gi|254780145|r 159 VRAISAFVDKN 169 (172) Q Consensus 159 ~~~L~~~~~k~ 169 (172) ++..++...++ T Consensus 171 v~~~~A~lLk~ 181 (348) T 1vq8_G 171 VSQELSNVLNE 181 (348) T ss_dssp ----------- T ss_pred CCHHHHHHHHH T ss_conf 68999999996 No 5 >>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (g:) Probab=99.84 E-value=2e-22 Score=168.43 Aligned_cols=157 Identities=11% Similarity=0.128 Sum_probs=137.3 Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC-----CCCCCCCCCCCC Q ss_conf 489999999999999508979999827998899999999996569589986157999997313-----742120015784 Q gi|254780145|r 3 RQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT-----SIRGISDLFVGQ 77 (172) Q Consensus 3 r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~-----~~~~l~~~l~G~ 77 (172) |++|+++|+++++.|++++.+++++|.|+++++++++|+.||. +++++|+||||+|+|++++ +++.+.++++|+ T Consensus 7 ~e~K~~~v~~l~e~l~~~~~v~iv~~~gl~s~ql~~iR~~lr~-~a~l~vgKNtL~r~AL~~~~~e~~~~~~L~~~l~G~ 85 (317) T 2zkr_g 7 ATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRG-KAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGN 85 (317) T ss_dssp -------------------------------------------------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHCCC T ss_conf 7899999999999998699899998079877999999999756-846999533399999875013452089999984678 Q ss_pred EEEEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 378762-2342157887888641000122321024110798999998469998999999999999899999999977687 Q gi|254780145|r 78 SLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQT 156 (172) Q Consensus 78 ~a~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~ 156 (172) ++++|+ +||..++|++.+|.+.++ .++..++++++...+.+|++++++.++++.|+.|.....+.+..... T Consensus 86 ~gliFT~~dp~~v~k~l~~f~~~~~--------ar~g~ia~~dV~i~ag~t~~~~~~~~~l~~L~iPtki~~G~I~i~~~ 157 (317) T 2zkr_g 86 VGFVFTKEDLTEIRDMLLANKVPAA--------ARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSD 157 (317) T ss_dssp -------------------------------------------------------------------------------- T ss_pred EEEEEECCCCHHHHHHHHHCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCEEEEECC T ss_conf 3899970570789999997046001--------34556789737975898888987266898659981762766999416 Q ss_pred -HHHHHHHHHHHH Q ss_conf -999999999997 Q gi|254780145|r 157 -QVVRAISAFVDK 168 (172) Q Consensus 157 -~l~~~L~~~~~k 168 (172) .++...+.+..+ T Consensus 158 ~~v~k~G~~v~~~ 170 (317) T 2zkr_g 158 VQLIKTGDKVGAS 170 (317) T ss_dssp ------------- T ss_pred EEEECCCCCCCHH T ss_conf 2896589885899 No 6 >>3jyw_8 60S ribosomal protein LP0; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (8:) Probab=99.78 E-value=4.5e-20 Score=152.88 Aligned_cols=111 Identities=21% Similarity=0.256 Sum_probs=100.7 Q ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCC-----CCCCCCCCCC Q ss_conf 74899999999999995089799998279988999999999965695899861579999973137-----4212001578 Q gi|254780145|r 2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTS-----IRGISDLFVG 76 (172) Q Consensus 2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~-----~~~l~~~l~G 76 (172) +|++|+++|+++++.+++++.+++++|+|+++.+++++|+.||+ +++++|+||||+++|+++++ ++.+.++|.| T Consensus 2 ~r~~K~~~v~~l~~~l~~~~~v~i~~~~gl~~~~l~~lR~~lr~-~~~~~v~KNtl~~~Al~~~~~~~~~~~~l~~~l~G 80 (118) T 3jyw_8 2 IREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRG-RAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKG 80 (118) T ss_dssp CHHHHHHHHHHHHHHHHHCCCCCCCBCCSCCTHHHHHHHTTSCS-SCCCSCCCHHHHHHHHHSCCSSSCCSTTCTTTCSS T ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHCCC T ss_conf 50889999999999998699899997079867999999985334-86699728899999998522125226778875578 Q ss_pred CEEEEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCC Q ss_conf 4378762-23421578878886410001223210241107 Q gi|254780145|r 77 QSLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVL 115 (172) Q Consensus 77 ~~a~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~eg~~l 115 (172) |++++|+ +||..++|++.+|.+.++ ...|++.+++++ T Consensus 81 ~~ai~ft~~dp~~v~k~~~~f~k~~~--ak~G~ia~~~vy 118 (118) T 3jyw_8 81 YVGFVFTNEPLTEIKNVIVSNRVAAP--ARAGAVAPEDIW 118 (118) T ss_dssp SBCCCCSSSCHHHHHHHHHHHTTTTT--CCCCCBTTBCCC T ss_pred CEEEEEECCCHHHHHHHHHHHCCCCC--CCCCCCCCCCCC T ss_conf 87999979998999999998388666--668870674249 No 7 >>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} (A:137-180) Probab=98.82 E-value=8.3e-09 Score=78.40 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=43.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 98999999999999899999999977687999999999997626 Q gi|254780145|r 128 DLEGIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDKNQQ 171 (172) Q Consensus 128 s~~el~a~lv~~l~~p~~~l~~~L~~~~~~l~~~L~~~~~k~ee 171 (172) ||||++|+++|.+++|+++|+++|++++++++++|+++.||+|| T Consensus 1 Sre~Lla~llg~m~AP~~~lv~~L~~~~~klv~~L~Ai~~kKe~ 44 (44) T 1zav_A 1 SKEELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEKKSE 44 (44) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-- T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999998689999999972799999999999987259 No 8 >>2orm_A Probable tautomerase HP0924; homohexamer, 4-OT, 4-oxalocrotonate tautomerase homologue, isomerase; 2.10A {Helicobacter pylori J99} (A:1-50) Probab=32.67 E-value=33 Score=14.95 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=15.1 Q ss_pred CCHHHHHHHHHHHHHHHHH Q ss_conf 9748999999999999950 Q gi|254780145|r 1 MNRQGKSVEISELSKIFSS 19 (172) Q Consensus 1 m~r~~K~~~V~~l~~~l~~ 19 (172) .|+++|.++|+++.+.+.+ T Consensus 14 ~T~EQK~~li~~vT~~l~~ 32 (50) T 2orm_A 14 PTNEQKQQLIEGVSDLMVK 32 (50) T ss_dssp CCHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999 No 9 >>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* (A:215-263) Probab=31.44 E-value=20 Score=16.35 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=23.6 Q ss_pred HHCCCEEEEECHHHHHHHHH----HCCCCCCCCCCCC Q ss_conf 65695899861579999973----1374212001578 Q gi|254780145|r 44 REAGGGVKVAKNRLVKIAIR----DTSIRGISDLFVG 76 (172) Q Consensus 44 r~~~~~~~VvKNtL~k~A~~----~~~~~~l~~~l~G 76 (172) |..|.-++|.||.+.+..++ ++.++.+..+..| T Consensus 9 r~~GhPvR~lkNk~tr~~~~lE~~ga~~eele~l~~G 45 (49) T 2z6i_A 9 QHFGHAVRAIKNQLTRDFELAEKDAFKQEDPDLEIFE 45 (49) T ss_dssp GGGTCCEEEECSHHHHHHHHHHHHHHTC---CCHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH T ss_conf 2448854655768999999742133334564304798 No 10 >>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} (A:53-144) Probab=22.55 E-value=49 Score=13.78 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=34.1 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHH-CCCCCCCHHHHHHHHCCCC Q ss_conf 78437876223421578878886410001223210-2411079899999846999 Q gi|254780145|r 75 VGQSLIVYSDSPVIAPKISVSFSNDNNEFRVLGGV-VEKGVLNQDSIKQIASLPD 128 (172) Q Consensus 75 ~G~~a~~f~~d~~~~aK~~~~f~k~~~~l~i~gg~-~eg~~l~~~~i~~lakLPs 128 (172) .|+..+.|++|+....|.+..|...-+.-.+..|+ +-..-+++.--..+...|+ T Consensus 23 ~~~i~V~F~~~~~Vgvk~ir~~~~~~~~en~~r~IlV~q~~itp~Akk~i~~~~~ 77 (92) T 1dzf_A 23 MGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPP 77 (92) T ss_dssp CCCEEEEECSSSEECHHHHHHHHHHHHHTTCSEEEEEESSEECHHHHTTTTSSTT T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC T ss_conf 8739999789985358999999999975676547999768889799999975688 Done!