HHsearch results for GI: 254780145 and protein with PDBid: 2j01_J
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I
Probab=100.00 E-value=1.1e-44 Score=314.52 Aligned_cols=169 Identities=24% Similarity=0.491 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCC-EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 974899999999999995089-7999982799889999999999656958998615799999731374212001578437
Q gi|254780145|r 1 MNRQGKSVEISELSKIFSSSG-SIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTSIRGISDLFVGQSL 79 (172)
Q Consensus 1 m~r~~K~~~V~~l~~~l~~s~-~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~~a 79 (172)
|+|++|+++|+++++.|++++ ++++++|+||||+|+++||++||++|++|+|+||||+|+|+++++++.+ +.|.||++
T Consensus 1 M~~~~K~~~v~~l~~~l~~a~~~~~~~~y~Gl~v~~~~~LR~~lr~~g~~~~VvKNtL~k~A~~~t~~~~l-~~~~G~~a 79 (173)
T 2j01_J 1 MPNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELGLPEL-DGLQGPSA 79 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCHH-HHCCCCEE
T ss_conf 99278999999999999838773999977999789999999999867987999704999999873796311-33048668
Q ss_pred EEEECCCCHHHHHHHHHHHHCCH--HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87622342157887888641000--1223210241107989999984699989999999999998999999999776879
Q gi|254780145|r 80 IVYSDSPVIAPKISVSFSNDNNE--FRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQ 157 (172)
Q Consensus 80 ~~f~~d~~~~aK~~~~f~k~~~~--l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~~ 157 (172)
++|++||+.++|++.+|.|++++ +.++||++||++++.+++++||+|||+|+++++++|+|++|+++++++|++++++
T Consensus 80 ~~f~~d~~~~ak~~~~f~k~~~k~~~~i~gg~~eg~~l~~~~i~~la~LPs~eel~a~lv~~l~~P~~~l~~~L~a~~~~ 159 (173)
T 2j01_J 80 VVFYEDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTAKDVEALAELPTMDELRAELVGVLQAPMAELVGVLGGVARE 159 (173)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99853664067888999984635363257998878870688999983599999999999999987999999999858999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999762
Q gi|254780145|r 158 VVRAISAFVDKNQ 170 (172)
Q Consensus 158 l~~~L~~~~~k~e 170 (172)
|+++|+++++|++
T Consensus 160 l~~~L~a~~~kk~ 172 (173)
T 2j01_J 160 LVGILEAYAEKKA 172 (173)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997404