Query gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 172 No_of_seqs 125 out of 1666 Neff 6.9 Searched_HMMs 23785 Date Sun May 22 16:12:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780145.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2j01_J 50S ribosomal protein L 100.0 1.1E-44 0 314.5 19.7 169 1-170 1-172 (173) 2 1zav_A 50S ribosomal protein L 100.0 3.5E-44 0 311.4 20.0 171 1-171 3-180 (180) 3 3jyw_8 60S ribosomal protein L 99.7 5.4E-19 2.3E-23 144.8 3.1 105 2-110 2-112 (118) 4 3jsy_A Acidic ribosomal protei 99.7 1.1E-16 4.7E-21 129.4 11.3 94 3-97 2-103 (213) 5 3a1y_G Acidic ribosomal protei 99.7 6.1E-17 2.6E-21 131.2 5.7 95 2-96 4-106 (284) 6 1vq8_G Acidic ribosomal protei 99.6 1.9E-16 8.2E-21 127.9 3.8 93 4-97 14-109 (348) 7 2zkr_g 60S acidic ribosomal pr 99.4 1E-14 4.4E-19 116.4 0.0 95 1-96 1-105 (317) 8 2xr1_A Cleavage and polyadenyl 43.1 12 0.0005 16.8 2.4 35 8-42 399-433 (640) 9 1luz_A Protein K3, protein K2; 42.8 14 0.00058 16.4 2.6 35 22-56 37-71 (88) 10 3brc_A Conserved protein of un 29.9 24 0.001 14.9 2.2 51 4-54 20-70 (156) 11 1i1q_B Anthranilate synthase c 20.7 38 0.0016 13.5 3.9 55 23-87 3-58 (192) No 1 >2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I Probab=100.00 E-value=1.1e-44 Score=314.52 Aligned_cols=169 Identities=24% Similarity=0.491 Sum_probs=163.5 Q ss_pred CCHHHHHHHHHHHHHHHHHCC-EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEE Q ss_conf 974899999999999995089-7999982799889999999999656958998615799999731374212001578437 Q gi|254780145|r 1 MNRQGKSVEISELSKIFSSSG-SIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTSIRGISDLFVGQSL 79 (172) Q Consensus 1 m~r~~K~~~V~~l~~~l~~s~-~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~~a 79 (172) |+|++|+++|+++++.|++++ ++++++|+||||+|+++||++||++|++|+|+||||+|+|+++++++.+ +.|.||++ T Consensus 1 M~~~~K~~~v~~l~~~l~~a~~~~~~~~y~Gl~v~~~~~LR~~lr~~g~~~~VvKNtL~k~A~~~t~~~~l-~~~~G~~a 79 (173) T 2j01_J 1 MPNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELGLPEL-DGLQGPSA 79 (173) T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCHH-HHCCCCEE T ss_conf 99278999999999999838773999977999789999999999867987999704999999873796311-33048668 Q ss_pred EEEECCCCHHHHHHHHHHHHCCH--HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 87622342157887888641000--1223210241107989999984699989999999999998999999999776879 Q gi|254780145|r 80 IVYSDSPVIAPKISVSFSNDNNE--FRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQ 157 (172) Q Consensus 80 ~~f~~d~~~~aK~~~~f~k~~~~--l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~~ 157 (172) ++|++||+.++|++.+|.|++++ +.++||++||++++.+++++||+|||+|+++++++|+|++|+++++++|++++++ T Consensus 80 ~~f~~d~~~~ak~~~~f~k~~~k~~~~i~gg~~eg~~l~~~~i~~la~LPs~eel~a~lv~~l~~P~~~l~~~L~a~~~~ 159 (173) T 2j01_J 80 VVFYEDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTAKDVEALAELPTMDELRAELVGVLQAPMAELVGVLGGVARE 159 (173) T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99853664067888999984635363257998878870688999983599999999999999987999999999858999 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999762 Q gi|254780145|r 158 VVRAISAFVDKNQ 170 (172) Q Consensus 158 l~~~L~~~~~k~e 170 (172) |+++|+++++|++ T Consensus 160 l~~~L~a~~~kk~ 172 (173) T 2j01_J 160 LVGILEAYAEKKA 172 (173) T ss_pred HHHHHHHHHHHCC T ss_conf 9999999997404 No 2 >1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A Probab=100.00 E-value=3.5e-44 Score=311.36 Aligned_cols=171 Identities=29% Similarity=0.516 Sum_probs=165.0 Q ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHC---CCEEEEECHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 9748999999999999950897999982799889999999999656---9589986157999997313742120015784 Q gi|254780145|r 1 MNRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREA---GGGVKVAKNRLVKIAIRDTSIRGISDLFVGQ 77 (172) Q Consensus 1 m~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~---~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~ 77 (172) |+|++|+++|+++++.|+++++++++||+||+|+++++||+++|++ |++|+|+||||+++|+++++|+++.++|+|| T Consensus 3 m~r~~K~~~v~~l~~~l~~s~~v~~~~y~gltv~~~~~LR~~lre~~~~g~~~kVvKNtL~k~Al~~t~~~~l~~~l~g~ 82 (180) T 1zav_A 3 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGP 82 (180) T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSSS T ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCHHHHHHCCCC T ss_conf 87899999999999999759979999638997999999999998623698289996209999998667815678761587 Q ss_pred EEEEEE--CCCCHHHHHHHHHHHHCCH--HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 378762--2342157887888641000--122321024110798999998469998999999999999899999999977 Q gi|254780145|r 78 SLIVYS--DSPVIAPKISVSFSNDNNE--FRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGT 153 (172) Q Consensus 78 ~a~~f~--~d~~~~aK~~~~f~k~~~~--l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~ 153 (172) ++++|+ +||+.++|++.+|.|+++. +.++||++||+++|.+++++||+|||++|++||++|+|++|+++++++|++ T Consensus 83 ~a~~~~~~~d~~~~aK~~~~f~k~~~~~~~~i~gg~~eg~~l~~~~v~~la~LPs~eel~a~lv~~l~ap~~~l~~~L~a 162 (180) T 1zav_A 83 TAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSG 162 (180) T ss_dssp EEEEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 52787624771788887799998704545146788854875699999999459999999999999998799999999971 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 687999999999997626 Q gi|254780145|r 154 PQTQVVRAISAFVDKNQQ 171 (172) Q Consensus 154 ~~~~l~~~L~~~~~k~ee 171 (172) ++++|+++|+++++|++| T Consensus 163 ~~~~l~~~L~~~~~kk~e 180 (180) T 1zav_A 163 ILRNLVYVLNAIKEKKSE 180 (180) T ss_dssp HHHHHHHHHHHHHHTC-- T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 799999999999987259 No 3 >3jyw_8 60S ribosomal protein LP0; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Probab=99.74 E-value=5.4e-19 Score=144.75 Aligned_cols=105 Identities=22% Similarity=0.276 Sum_probs=93.8 Q ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC-----CCCCCCCCCCC Q ss_conf 7489999999999999508979999827998899999999996569589986157999997313-----74212001578 Q gi|254780145|r 2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT-----SIRGISDLFVG 76 (172) Q Consensus 2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~-----~~~~l~~~l~G 76 (172) ||++|+++|+++++.|++++++++++|+|++++++++||++||+. +.++|+||||+++|++++ +++.+.+++.| T Consensus 2 tre~K~~~v~el~e~l~~~~~v~vv~~~gl~~~~~~~lR~~lr~~-~~~~v~Kntl~k~Al~~~~~~~~~~~~l~~~l~G 80 (118) T 3jyw_8 2 IREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGR-AVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKG 80 (118) T ss_dssp CHHHHHHHHHHHHHHHHHCCCCCCCBCCSCCTHHHHHHHTTSCSS-CCCSCCCHHHHHHHHHSCCSSSCCSTTCTTTCSS T ss_pred CCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCC-CEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHCCC T ss_conf 508899999999999986998999980798789999999997638-8699853899999998500025667888866678 Q ss_pred CEEEEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHC Q ss_conf 4378762-234215788788864100012232102 Q gi|254780145|r 77 QSLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVV 110 (172) Q Consensus 77 ~~a~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~ 110 (172) |++++|+ +||..++|++.+|.+..+ .++|.+ T Consensus 81 ~~~l~ft~~d~~~~~k~l~~~~~~~~---aK~G~i 112 (118) T 3jyw_8 81 YVGFVFTNEPLTEIKNVIVSNRVAAP---ARAGAV 112 (118) T ss_dssp SBCCCCSSSCHHHHHHHHHHHTTTTT---CCCCCB T ss_pred CEEEEEECCCHHHHHHHHHHHCCCCC---CCCCCC T ss_conf 87999979998999999998488666---778871 No 4 >3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii} Probab=99.70 E-value=1.1e-16 Score=129.44 Aligned_cols=94 Identities=16% Similarity=0.306 Sum_probs=84.7 Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC-------CCCCCCCCCC Q ss_conf 489999999999999508979999827998899999999996569589986157999997313-------7421200157 Q gi|254780145|r 3 RQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT-------SIRGISDLFV 75 (172) Q Consensus 3 r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~-------~~~~l~~~l~ 75 (172) +++|++.|+++++.+++++.+++++|+|+++++++++|++||. ++.++|+||||+++|++++ +++.+.++++ T Consensus 2 ~~wK~~~v~~l~e~l~~~~~v~v~~~~gl~~~~l~~lR~~lr~-~~~~~v~KNtL~~~Al~~~~~~~~~~~l~~L~~~L~ 80 (213) T 3jsy_A 2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRD-KVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVE 80 (213) T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTT-TEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCC T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHC T ss_conf 7169999999999997699899998069977999999999668-969999646999999985034321202788888836 Q ss_pred CCEEEEEEC-CCCHHHHHHHHHH Q ss_conf 843787622-3421578878886 Q gi|254780145|r 76 GQSLIVYSD-SPVIAPKISVSFS 97 (172) Q Consensus 76 G~~a~~f~~-d~~~~aK~~~~f~ 97 (172) |+++++|++ ||...++.+.+|. T Consensus 81 G~~~liFTn~dp~ev~k~l~~~~ 103 (213) T 3jsy_A 81 RGAAILVTDMNPFKLYKLLEENK 103 (213) T ss_dssp SSEEEEEESSCHHHHHHHHHHSC T ss_pred CCEEEEEECCCHHHHHHHHHHHC T ss_conf 77389995699899999999707 No 5 >3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii} Probab=99.66 E-value=6.1e-17 Score=131.18 Aligned_cols=95 Identities=21% Similarity=0.349 Sum_probs=85.0 Q ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC-------CCCCCCCCC Q ss_conf 7489999999999999508979999827998899999999996569589986157999997313-------742120015 Q gi|254780145|r 2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT-------SIRGISDLF 74 (172) Q Consensus 2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~-------~~~~l~~~l 74 (172) ..++|+++|+++++.+++++.+++++|+|+++++++++|++||+.++.++|+||||+++|++++ +++.|.+++ T Consensus 4 v~e~K~~~v~~L~e~l~~~~~v~vv~~~gl~s~ql~~lR~~Lr~~~~~l~v~KNtL~k~Al~~~~~~~~~~~le~L~~~L 83 (284) T 3a1y_G 4 VAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYI 83 (284) T ss_dssp SCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCC T ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 38999999999999997699899998179877999999999983596899972289999997322110211077899872 Q ss_pred CCCEEEEEEC-CCCHHHHHHHHH Q ss_conf 7843787622-342157887888 Q gi|254780145|r 75 VGQSLIVYSD-SPVIAPKISVSF 96 (172) Q Consensus 75 ~G~~a~~f~~-d~~~~aK~~~~f 96 (172) +|+++++|++ ||....|.+.+| T Consensus 84 ~G~~gliFTn~dp~ev~k~l~~~ 106 (284) T 3a1y_G 84 DRGAGILVTNMNPFKLYKFLQQN 106 (284) T ss_dssp CTTEEEEEESSCHHHHHHHHHHC T ss_pred CCCEEEEEECCCHHHHHHHHHHH T ss_conf 78717999468989999999970 No 6 >1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ... Probab=99.61 E-value=1.9e-16 Score=127.86 Aligned_cols=93 Identities=20% Similarity=0.346 Sum_probs=83.4 Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC--CCCCCCCCCCCCEEEE Q ss_conf 89999999999999508979999827998899999999996569589986157999997313--7421200157843787 Q gi|254780145|r 4 QGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT--SIRGISDLFVGQSLIV 81 (172) Q Consensus 4 ~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~--~~~~l~~~l~G~~a~~ 81 (172) ++|+++|+++++.|++++.+++++|.|+++++++++|+.||. ++.++|+||||+|+|+++. +++.|.++++|+++++ T Consensus 14 EwK~~~V~eL~e~l~~y~~v~vv~~~gv~s~ql~~iRk~LR~-~a~i~v~KNTLmr~AL~e~~~~le~L~~~L~G~~alv 92 (348) T 1vq8_G 14 EWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHG-TAELRVSRNTLLERALDDVDDGLEDLNGYITGQVGLI 92 (348) T ss_dssp HHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHTC------------------- T ss_pred HHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEEHHHHHHHHHHCCCCHHHHHHHHCCCEEEE T ss_conf 889999999999997699899998279988999999999767-9689998549999999870988899999837974899 Q ss_pred EEC-CCCHHHHHHHHHH Q ss_conf 622-3421578878886 Q gi|254780145|r 82 YSD-SPVIAPKISVSFS 97 (172) Q Consensus 82 f~~-d~~~~aK~~~~f~ 97 (172) |++ ||....+.+.+|. T Consensus 93 FTn~dp~ev~k~l~~~k 109 (348) T 1vq8_G 93 GTDDNPFSLFQELEASK 109 (348) T ss_dssp ----------------- T ss_pred EECCCHHHHHHHHHHHC T ss_conf 96688789999998725 No 7 >2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=99.42 E-value=1e-14 Score=116.40 Aligned_cols=95 Identities=16% Similarity=0.226 Sum_probs=81.7 Q ss_pred CCHH----HHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC-----CCCCCC Q ss_conf 9748----9999999999999508979999827998899999999996569589986157999997313-----742120 Q gi|254780145|r 1 MNRQ----GKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT-----SIRGIS 71 (172) Q Consensus 1 m~r~----~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~-----~~~~l~ 71 (172) |+|+ +|.++|+++++.+++++.+++++|.|+++++++++|+.||. ++.++|.||||+|+|++++ +++.|. T Consensus 1 m~r~~~a~wK~~~v~kL~ell~~y~~v~Iv~~~nv~s~qlq~IR~~LRg-~a~i~mgKNtLmr~AL~~~~e~~~~le~L~ 79 (317) T 2zkr_g 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRG-KAVVLMGKNTMMRKAIRGHLENNPALEKLL 79 (317) T ss_dssp -------------------------------------------------------------------------------- T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHCCCCCHHHHHHH T ss_conf 9970477999999999999997699899998279877999999999756-846999655699999985334541278889 Q ss_pred CCCCCCEEEEEEC-CCCHHHHHHHHH Q ss_conf 0157843787622-342157887888 Q gi|254780145|r 72 DLFVGQSLIVYSD-SPVIAPKISVSF 96 (172) Q Consensus 72 ~~l~G~~a~~f~~-d~~~~aK~~~~f 96 (172) ++++|+++++|++ ||....+.+.++ T Consensus 80 ~~L~G~~gliFTn~dp~ev~~~l~~~ 105 (317) T 2zkr_g 80 PHIRGNVGFVFTKEDLTEIRDMLLAN 105 (317) T ss_dssp -------------------------- T ss_pred HHHCCCEEEEEECCCHHHHHHHHHHH T ss_conf 87258726888636718999999972 No 8 >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Probab=43.13 E-value=12 Score=16.83 Aligned_cols=35 Identities=6% Similarity=0.008 Sum_probs=19.3 Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHH Q ss_conf 99999999995089799998279988999999999 Q gi|254780145|r 8 VEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKK 42 (172) Q Consensus 8 ~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~ 42 (172) .+.+.+.+.+++...+++.-|.--.+.++..+-.. T Consensus 399 ~l~~~I~~tl~~gg~VlIp~~a~gR~qEI~~~l~~ 433 (640) T 2xr1_A 399 HLQMVVKNTIERGGIAVIPAFAVGRSQEVMIVLEE 433 (640) T ss_dssp HHHHHC--------CEEEECCTTTHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHH T ss_conf 99999999998299789986320369999999999 No 9 >1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus WR} SCOP: b.40.4.5 Probab=42.81 E-value=14 Score=16.43 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.8 Q ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHH Q ss_conf 79999827998899999999996569589986157 Q gi|254780145|r 22 SIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNR 56 (172) Q Consensus 22 ~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNt 56 (172) -.++++|-.+..+.+..+|++|-..-++.+|++-. T Consensus 37 eail~dy~~~~~d~~~klk~kLVGKtIkVqVIR~D 71 (88) T 1luz_A 37 EAILAESVKMHMDRYVEYRDKLVGKTVKVKVIRVD 71 (88) T ss_dssp EEEEGGGSSCCHHHHHHHHHHHTTCEEEEEEEEEE T ss_pred EEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEC T ss_conf 38877343551589999999753956999999983 No 10 >3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, structural genomics, MCSG, PSI-2; 1.60A {Methanothermobacterthermautotrophicus str} Probab=29.88 E-value=24 Score=14.86 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=37.3 Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEC Q ss_conf 899999999999995089799998279988999999999965695899861 Q gi|254780145|r 4 QGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAK 54 (172) Q Consensus 4 ~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvK 54 (172) -.|.+.|+.+++.+.+++-++|...++-.+.-.++.-.++-...+++--+. T Consensus 20 GD~~EEve~Iq~~I~~Ak~ivV~t~N~kK~~vi~~il~~~~~~~~~~l~i~ 70 (156) T 3brc_A 20 GDRSEEVEAIRKYIRSARRTVVPNWNAEKVDAINDVLRSFNLREAEHLQFN 70 (156) T ss_dssp SCCHHHHHHHHHHHHHCSCEEECCCCHHHHHHHHHHHHHTTCCCCEECCSC T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECC T ss_conf 655999999999985266499856970677999999998168630046546 No 11 >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Probab=20.73 E-value=38 Score=13.54 Aligned_cols=55 Identities=16% Similarity=0.330 Sum_probs=30.2 Q ss_pred EEEEE-ECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC Q ss_conf 99998-279988999999999965695899861579999973137421200157843787622342 Q gi|254780145|r 23 IVVAH-YKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTSIRGISDLFVGQSLIVYSDSPV 87 (172) Q Consensus 23 ~~v~~-y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~~a~~f~~d~~ 87 (172) ++++| |.-.| ..+-+.|++.|+.+.|++|..-.... .+.+ ....+.+++.|..|. T Consensus 3 iliiD~~dSFt----~Niv~~l~~~g~~v~V~~~~~~~~~~----~~~~--~~~~~dgiILsgGPg 58 (192) T 1i1q_B 3 ILLLDNIDSFT----WNLADQLRTNGHNVVIYRNHIPAQTL----IDRL--ATMKNPVLMLSPGPG 58 (192) T ss_dssp EEEEECSCSSH----HHHHHHHHHTTCEEEEEETTSCSHHH----HHHH--TTCSSEEEEECCCSS T ss_pred EEEEECCCCHH----HHHHHHHHHCCCCEEEEECCCCCCCC----HHHH--HHCCCCEEEEECCCC T ss_conf 99997888279----99999999789907999899877367----9999--834969699819998 Done!