Query gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 172
No_of_seqs 125 out of 1666
Neff 6.9
Searched_HMMs 13730
Date Wed Jun 1 02:52:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780145.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zava1 d.58.62.1 (A:1-177) Ri 100.0 7.8E-44 0 307.4 20.0 169 1-169 2-177 (177)
2 d1a9xb2 c.23.16.1 (B:1653-1880 71.6 2.7 0.0002 19.5 4.4 79 22-115 41-123 (228)
3 d1luza_ b.40.4.5 (A:) Viral st 43.4 7.7 0.00056 16.5 2.6 35 22-56 34-68 (85)
4 d1x87a_ e.51.1.1 (A:) Urocanat 17.8 21 0.0015 13.6 1.2 60 29-88 266-361 (545)
5 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 16.7 27 0.0019 12.9 2.9 38 1-38 12-53 (76)
6 d1h1js_ a.140.2.1 (S:) S/mar D 16.5 26 0.0019 13.1 1.4 36 26-64 3-38 (44)
7 d1uwka_ e.51.1.1 (A:) Urocanat 15.9 19 0.0014 13.9 0.6 60 29-88 274-369 (554)
8 d1uoua1 a.46.2.1 (A:33-100) Th 15.7 28 0.0021 12.8 2.0 13 110-122 12-24 (68)
9 d1jjga_ b.40.4.5 (A:) Viral st 15.6 11 0.00079 15.5 -0.7 33 23-55 59-91 (102)
10 d2b4ya1 c.31.1.5 (A:36-302) NA 11.2 38 0.0027 12.0 1.6 32 10-41 5-37 (267)
No 1
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=7.8e-44 Score=307.45 Aligned_cols=169 Identities=29% Similarity=0.518 Sum_probs=163.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHC---CCEEEEECHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9748999999999999950897999982799889999999999656---9589986157999997313742120015784
Q gi|254780145|r 1 MNRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREA---GGGVKVAKNRLVKIAIRDTSIRGISDLFVGQ 77 (172)
Q Consensus 1 m~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~---~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~ 77 (172)
|+|++|+++|+++++.|++++++++++|+||||+|+++||+++|++ |++++|+||||+|+|+++++++++.++|.||
T Consensus 2 m~r~~K~~~v~~l~~~l~~s~~vv~~~y~gLtv~e~~~LR~~lre~~~~g~~~kV~KNtL~k~Al~~t~~~~l~~~l~g~ 81 (177)
T d1zava1 2 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGP 81 (177)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 98799999999999999759989999638998899999999999734698399996269999998557852136777525
Q ss_pred EEEEEE--CCCCHHHHHHHHHHHHCCH--HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 378762--2342157887888641000--122321024110798999998469998999999999999899999999977
Q gi|254780145|r 78 SLIVYS--DSPVIAPKISVSFSNDNNE--FRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGT 153 (172)
Q Consensus 78 ~a~~f~--~d~~~~aK~~~~f~k~~~~--l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~ 153 (172)
++++|+ +||+.++|++.+|.|+++. ++++||++||+++|.+++++||+|||+||++|+|+|+|++|+++++++|++
T Consensus 82 ~a~~~~~~~d~~~~aK~l~~f~k~~k~~~~~i~gg~~eg~~l~~~~i~~la~LPs~eel~a~l~~~L~ap~~~l~~~L~~ 161 (177)
T d1zava1 82 TAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSG 161 (177)
T ss_dssp EEEEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 41013425870456567777766403333302378743766699999999649999999999999998689999999975
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6879999999999976
Q gi|254780145|r 154 PQTQVVRAISAFVDKN 169 (172)
Q Consensus 154 ~~~~l~~~L~~~~~k~ 169 (172)
++++|+++|+++.+|+
T Consensus 162 ~~~~l~~~L~a~~~kk 177 (177)
T d1zava1 162 ILRNLVYVLNAIKEKK 177 (177)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 8999999999997339
No 2
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=71.57 E-value=2.7 Score=19.49 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=46.1
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH--HHHHHHHHHH
Q ss_conf 79999827998899999999996569589986157999997313742120015784378762234215--7887888641
Q gi|254780145|r 22 SIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTSIRGISDLFVGQSLIVYSDSPVIA--PKISVSFSND 99 (172)
Q Consensus 22 ~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~~a~~f~~d~~~~--aK~~~~f~k~ 99 (172)
-++++|| |..-+.+ +.+|+.|+.+.|++++. ..+.+. -..|.++++|+.|..+ +....+..++
T Consensus 41 ~i~~~D~-G~k~~il----r~l~~~~~~~~v~p~~~--------~~~~i~--~~~pdgivlS~GPg~P~~~~~~~~~~~~ 105 (228)
T d1a9xb2 41 HVVAYDF-GAKRNIL----RMLVDRGCRLTIVPAQT--------SAEDVL--KMNPDGIFLSNGPGDPAPCDYAITAIQK 105 (228)
T ss_dssp EEEEEES-SCCHHHH----HHHHHTTEEEEEEETTC--------CHHHHH--TTCCSEEEECCCSBCSTTCHHHHHHHHH
T ss_pred EEEEEEC-CCCHHHH----HHHHHCCCEEEECCCCC--------CHHHHH--HCCCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 6999957-8727767----67875596578758889--------999998--4499999982887765321127899999
Q ss_pred -C-CHHHHHHHHCCCCCC
Q ss_conf -0-001223210241107
Q gi|254780145|r 100 -N-NEFRVLGGVVEKGVL 115 (172)
Q Consensus 100 -~-~~l~i~gg~~eg~~l 115 (172)
. .++.|.|-|+.-+++
T Consensus 106 ~~~~~iPILGIClG~Qli 123 (228)
T d1a9xb2 106 FLETDIPVFGICLGHQLL 123 (228)
T ss_dssp HTTSCCCEEEETHHHHHH
T ss_pred HHHCCCCEEEEECCHHHH
T ss_conf 981799889997675899
No 3
>d1luza_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Vaccinia virus [TaxId: 10245]}
Probab=43.37 E-value=7.7 Score=16.52 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=30.0
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHH
Q ss_conf 79999827998899999999996569589986157
Q gi|254780145|r 22 SIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNR 56 (172)
Q Consensus 22 ~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNt 56 (172)
-.++++|-.+..+.+..+|++|-..-++.+|++-.
T Consensus 34 ea~l~dy~~~~~d~~~klk~kLVGKtIkvqVIR~d 68 (85)
T d1luza_ 34 EAILAESVKMHMDRYVEYRDKLVGKTVKVKVIRVD 68 (85)
T ss_dssp EEEEGGGSSCCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEC
T ss_conf 37755154660689999999852956999999973
No 4
>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus stearothermophilus [TaxId: 1422]}
Probab=17.85 E-value=21 Score=13.61 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHH----------------------HHHHCCCEEEEECHHHHHHHHHH----C-CCCCCCC--------C
Q ss_conf 7998899999999----------------------99656958998615799999731----3-7421200--------1
Q gi|254780145|r 29 KGISVAQIKDLRK----------------------KMREAGGGVKVAKNRLVKIAIRD----T-SIRGISD--------L 73 (172)
Q Consensus 29 ~gltv~~~~~lR~----------------------~lr~~~~~~~VvKNtL~k~A~~~----~-~~~~l~~--------~ 73 (172)
.|+|..|.++||. +|.+.|+.+--|-|++...|.+. + .|+...| .
T Consensus 266 ~G~s~eEa~~lr~~dP~~f~~~v~~Sm~~Hv~Am~~l~~~G~~~FDYGNn~r~~A~~aG~~~aF~~PgfVp~yirPLFc~ 345 (545)
T d1x87a_ 266 AGLTLDEAAELRARDPKQYIARAKQSIAAHVRAMLAMQKQGAVTFDYGNNIRQVAKDEGVDDAFSFPGFVPAYIRPLFCE 345 (545)
T ss_dssp TTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCEECBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHHT
T ss_pred CCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99998999998665889999989989999999999999779858645578999999739977666775389885887606
Q ss_pred CCCCEEEEE-ECCCCH
Q ss_conf 578437876-223421
Q gi|254780145|r 74 FVGQSLIVY-SDSPVI 88 (172)
Q Consensus 74 l~G~~a~~f-~~d~~~ 88 (172)
-.||==++- |.||.-
T Consensus 346 G~GPFRWValSGdpeD 361 (545)
T d1x87a_ 346 GKGPFRWVALSGDPED 361 (545)
T ss_dssp TCEEEEEEETTCCHHH
T ss_pred CCCCCEEEECCCCHHH
T ss_conf 7688612442688788
No 5
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=16.68 E-value=27 Score=12.95 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHHHH----CCEEEEEEECCCCHHHHHH
Q ss_conf 9748999999999999950----8979999827998899999
Q gi|254780145|r 1 MNRQGKSVEISELSKIFSS----SGSIVVAHYKGISVAQIKD 38 (172)
Q Consensus 1 m~r~~K~~~V~~l~~~l~~----s~~~~v~~y~gltv~~~~~ 38 (172)
+|.++|+.+++++.+.+.+ ..-.+.+-+.-+...+|..
T Consensus 12 lT~EQK~~L~~~iT~a~~~~lg~~~e~V~V~i~Ev~~enW~~ 53 (76)
T d1gyxa_ 12 LDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQA 53 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECCGGGHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHH
T ss_conf 999999999999999999983969775999999879776000
No 6
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.53 E-value=26 Score=13.06 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=26.8
Q ss_pred EEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHH
Q ss_conf 982799889999999999656958998615799999731
Q gi|254780145|r 26 AHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRD 64 (172)
Q Consensus 26 ~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~ 64 (172)
.||+.|+|. +||..|++.|....=-|+.|+.+-.+.
T Consensus 3 ~dy~~ltv~---eLK~~lk~rgL~~sG~Ka~Li~RL~~~ 38 (44)
T d1h1js_ 3 ADYSSLTVV---QLKDLLTKRNLSVGGLKNELVQRLIKD 38 (44)
T ss_dssp CSGGGCCHH---HHHHHHHHTTCCCCSSHHHHHHHHHHH
T ss_pred CCHHHCCHH---HHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 767778099---999999987789888899999999987
No 7
>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida [TaxId: 303]}
Probab=15.91 E-value=19 Score=13.89 Aligned_cols=60 Identities=17% Similarity=0.094 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHH----------------------HHHHCCCEEEEECHHHHHHHHHHC-----CCCCCCC--------C
Q ss_conf 7998899999999----------------------996569589986157999997313-----7421200--------1
Q gi|254780145|r 29 KGISVAQIKDLRK----------------------KMREAGGGVKVAKNRLVKIAIRDT-----SIRGISD--------L 73 (172)
Q Consensus 29 ~gltv~~~~~lR~----------------------~lr~~~~~~~VvKNtL~k~A~~~~-----~~~~l~~--------~ 73 (172)
.|+|..|..+||. ++.+.|+.+--|-|++...|.+.- .|+...| +
T Consensus 274 ~G~s~eEa~~lr~~dP~~f~~~v~~Sm~rHv~Am~~l~~~G~~~FDYGNn~r~~A~~aG~~~aF~~PgfVp~yirPlFc~ 353 (554)
T d1uwka_ 274 AGWTWEQYRDRAQTEPAAVVKAAKQSMAVHVQAMLDFQKQGVPTFDYGNNIRQMAKEEGVADAFDFPGFVPAYIRPLFCR 353 (554)
T ss_dssp TTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHTT
T ss_pred CCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99986899999876899999999999999999999999779758645568999998579866666774188885787606
Q ss_pred CCCCEEEEE-ECCCCH
Q ss_conf 578437876-223421
Q gi|254780145|r 74 FVGQSLIVY-SDSPVI 88 (172)
Q Consensus 74 l~G~~a~~f-~~d~~~ 88 (172)
-.||==++- |.||.-
T Consensus 354 G~GPFRWValSGdpeD 369 (554)
T d1uwka_ 354 GVGPFRWAALSGEAED 369 (554)
T ss_dssp TCBCEEEEETTCCHHH
T ss_pred CCCCCEEEECCCCCCC
T ss_conf 7688613551588442
No 8
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.69 E-value=28 Score=12.79 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=5.1
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 2411079899999
Q gi|254780145|r 110 VEKGVLNQDSIKQ 122 (172)
Q Consensus 110 ~eg~~l~~~~i~~ 122 (172)
.+|+-|+.+++..
T Consensus 12 ~~g~~Ls~~E~~~ 24 (68)
T d1uoua1 12 RDGGRLSEADIRG 24 (68)
T ss_dssp HTTCCCCHHHHHH
T ss_pred HCCCCCCHHHHHH
T ss_conf 7789999999999
No 9
>d1jjga_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Myxoma virus, m156r [TaxId: 10273]}
Probab=15.59 E-value=11 Score=15.52 Aligned_cols=33 Identities=9% Similarity=0.195 Sum_probs=21.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCEEEEECH
Q ss_conf 999982799889999999999656958998615
Q gi|254780145|r 23 IVVAHYKGISVAQIKDLRKKMREAGGGVKVAKN 55 (172)
Q Consensus 23 ~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKN 55 (172)
.++++|-.+..+.+..+|++|-..-+..+|++-
T Consensus 59 ail~dY~n~~~dr~~klkkkLVGKTIkVqVIRv 91 (102)
T d1jjga_ 59 CILLDYLNYRQDTLDRLKERLVGRVIKTRVVRA 91 (102)
T ss_dssp EEECTTCCSSCCCCCHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 566405456078999999975295699999996
No 10
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.24 E-value=38 Score=11.95 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=25.5
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCHHH-HHHHHH
Q ss_conf 99999999508979999827998899-999999
Q gi|254780145|r 10 ISELSKIFSSSGSIVVAHYKGISVAQ-IKDLRK 41 (172)
Q Consensus 10 V~~l~~~l~~s~~~~v~~y~gltv~~-~~~lR~ 41 (172)
++++++.|++++-++++-=.|+++.. +-++|.
T Consensus 5 l~~l~~~l~~ak~ivvlTGAGiS~~SGIPdfR~ 37 (267)
T d2b4ya1 5 MADFRKFFAKAKHIVIISGAGVSAESGVPTFRG 37 (267)
T ss_dssp HHHHHHHHHHCSEEEEEECGGGGGGGTC-----
T ss_pred HHHHHHHHHHCCCEEEEECCCEEHHHCCCCCCC
T ss_conf 999999998499499996820032019898339
Done!