RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10
[Candidatus Liberibacter asiaticus str. psy62]
         (172 letters)



>3i8i_Y Elongation Complex Of The 70s Ribosome With Three Trnas And
           Mrna. This Entry 3i8i Contains 50s Ribosomal Subnit.
           {Thermus thermophilus} (Y:)
          Length = 173

 Score =  122 bits (307), Expect = 3e-29
 Identities = 43/173 (24%), Positives = 90/173 (52%), Gaps = 4/173 (2%)

Query: 1   MNRQGKSVEISELSKIFS-SSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVK 59
           M  +     ++ L +    + GS  + +Y+G+   +   LR+ +++ G  + VAKN L++
Sbjct: 1   MPNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIR 60

Query: 60  IAIRDTSIRGISDLFVGQSLIVYSDSPVIAPKISVSF--SNDNNEFRVLGGVVEKGVLNQ 117
           +A+++  +  +  L  G S +V+ + PV A K  V F  SN     +V  G+++  +L  
Sbjct: 61  LALKELGLPELDGLQ-GPSAVVFYEDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTA 119

Query: 118 DSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDKNQ 170
             ++ +A LP ++ +RA ++  +Q+    LV +LG    ++V  + A+ +K  
Sbjct: 120 KDVEALAELPTMDELRAELVGVLQAPMAELVGVLGGVARELVGILEAYAEKKA 172


>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S,
           protein-protein complex, RNA-RNA complex, protein-RNA
           complex, peptidyl transferase reaction; HET: 1MA OMU OMG
           UR3 PSU SPS; 2.20A {Haloarcula marismortui} (G:)
          Length = 348

 Score =  103 bits (258), Expect = 1e-23
 Identities = 23/169 (13%), Positives = 58/169 (34%), Gaps = 4/169 (2%)

Query: 3   RQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAI 62
            + K  E+  + ++  S  S+ V +  GI   Q++D+R+ +      ++V++N L++ A+
Sbjct: 13  PEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHG-TAELRVSRNTLLERAL 71

Query: 63  R--DTSIRGISDLFVGQSLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDS 119
              D  +  ++    GQ  ++ + D+P    +   +               +  +   D+
Sbjct: 72  DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDT 131

Query: 120 IKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDK 168
                                + +   L         + V    + V  
Sbjct: 132 GVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLN 180


>1zav_A 50S ribosomal protein L10; ribosome structure and function,
           L10-L12 complex structure, L10E structure, L7/12
           ribosomal stalk; 1.90A {Thermotoga maritima} (A:1-136)
          Length = 136

 Score =  101 bits (254), Expect = 4e-23
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)

Query: 1   MNRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMRE---AGGGVKVAKNRL 57
           + RQ K + + E+S+IF  +  I+ A + G +VA + +LR ++RE    G   +V KN L
Sbjct: 3   LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTL 62

Query: 58  VKIAIRDTSIRGISDLFVGQSLIVYS--DSPVIAPKISVSFSNDNNE--FRVLGGVVEKG 113
           + +A+++    G  +   G + ++Y     PV A KI  +F  D      R+ GG +E  
Sbjct: 63  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGK 122

Query: 114 VLNQDSIKQIASLP 127
               + ++ IA LP
Sbjct: 123 KFTAEEVENIAKLP 136


>3a1y_G Acidic ribosomal protein P0; stalk, ribosomal protein,helix
           SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
           (G:1-206)
          Length = 206

 Score = 99.8 bits (248), Expect = 2e-22
 Identities = 23/180 (12%), Positives = 57/180 (31%), Gaps = 13/180 (7%)

Query: 2   NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIA 61
             + K  E+ EL+K+  S   I +     +    +  +R+ +RE GG ++V++N L+++A
Sbjct: 4   VAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELA 63

Query: 62  IRDTSI-------RGISDLFVGQSLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKG 113
           I+  +          + +     + I+ +  +P    K                   +  
Sbjct: 64  IKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVV 123

Query: 114 VLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVR-----LLGTPQTQVVRAISAFVDK 168
           V    +      +              +   T                ++   ++A   +
Sbjct: 124 VPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQ 183


>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S
           ribosomal subunit, ribosomal protein/RNA complex; 8.70A
           {Canis familiaris} (g:)
          Length = 317

 Score = 89.0 bits (220), Expect = 3e-19
 Identities = 18/170 (10%), Positives = 47/170 (27%), Gaps = 16/170 (9%)

Query: 2   NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIA 61
               KS    ++ ++        +     +   Q++ +R  +R     V + KN +++ A
Sbjct: 6   RATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRG-KAVVLMGKNTMMRKA 64

Query: 62  IRDTS-----IRGISDLFVGQSLIVY-SDSPVIAPKISVSFSNDNNEFRVLGGVVEKGVL 115
           IR        +  +     G    V+  +       + ++                 G +
Sbjct: 65  IRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAA--------ARAGAI 116

Query: 116 NQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQ-TQVVRAISA 164
               +   A    L   +     A+          +      Q+++    
Sbjct: 117 APCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDK 166


>3jyw_8 60S ribosomal protein LP0; eukaryotic ribosome, RACK1
           protein, flexible fitting; 8.90A {Thermomyces
           lanuginosus} (8:)
          Length = 118

 Score = 77.6 bits (191), Expect = 9e-16
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 3   RQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAI 62
           R+ K+   ++L +      S+ V     +S  Q+ ++RK++R     V + KN +V+ AI
Sbjct: 3   REKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRG-RAVVLMGKNTMVRRAI 61

Query: 63  RDTSIRG-----ISDLFVGQSLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGV 114
           R           +     G    V++ +       + VS        R  G V  + +
Sbjct: 62  RGFLSDLPDFEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVA-APARA-GAVAPEDI 117


>1zav_A 50S ribosomal protein L10; ribosome structure and function,
           L10-L12 complex structure, L10E structure, L7/12
           ribosomal stalk; 1.90A {Thermotoga maritima} (A:137-180)
          Length = 44

 Score = 27.2 bits (61), Expect = 1.3
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 130 EGIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDKNQQ 171
           E + A ++  +++  T LV  L      +V  ++A  +K  +
Sbjct: 3   EELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEKKSE 44


>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA,
           acyltransferase, structural genomics; HET: MSE ACO;
           1.90A {Bacillus anthracis} PDB: 3e4f_A* (A:15-268)
          Length = 254

 Score = 24.4 bits (53), Expect = 8.2
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 128 DLE--GIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDKN 169
           DL   G++ G    + S+ + +  + G     VV A+   + + 
Sbjct: 9   DLRKLGLKKGXTVIVHSSLSSIGWISGGAVA-VVEALXEVITEE 51


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.133    0.349 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,122,194
Number of extensions: 45962
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 17
Length of query: 172
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 90
Effective length of database: 2,184,039
Effective search space: 196563510
Effective search space used: 196563510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)