BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10
[Candidatus Liberibacter asiaticus str. psy62]
         (172 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 172

 Score =  337 bits (863), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 172/172 (100%), Positives = 172/172 (100%)

Query: 1   MNRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKI 60
           MNRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKI
Sbjct: 1   MNRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKI 60

Query: 61  AIRDTSIRGISDLFVGQSLIVYSDSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSI 120
           AIRDTSIRGISDLFVGQSLIVYSDSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSI
Sbjct: 61  AIRDTSIRGISDLFVGQSLIVYSDSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSI 120

Query: 121 KQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDKNQQG 172
           KQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDKNQQG
Sbjct: 121 KQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDKNQQG 172


>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score = 25.8 bits (55), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 83  SDSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQ 122
           S+  V + +  V +++D+NE RVLGG +  G    D++++
Sbjct: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEE 394


>gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide
          formyltransferase/IMP cyclohydrolase [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 536

 Score = 23.9 bits (50), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 15 KIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVK--IAIRD 64
          KI S+ G+  +   +GI V  + D+ K     GG VK    ++    ++IRD
Sbjct: 42 KIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGGRVKTLHPKIYGGILSIRD 93


>gi|254780713|ref|YP_003065126.1| 16S rRNA-processing protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 190

 Score = 23.5 bits (49), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 82  YSDSPVIAPKISVSFSNDNNEFRVL 106
           Y+++P+   +  V +SNDN E R+L
Sbjct: 28  YANNPIDLNRY-VLYSNDNRELRIL 51


>gi|254780418|ref|YP_003064831.1| 50S ribosomal protein L25/general stress protein Ctc [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 191

 Score = 23.1 bits (48), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 56  RLVKIAIRDTSIRGISDLFVGQSLIVYSDSPVIAPKISVSFSNDNNEFRVLGGVVEKGVL 115
            LV +  +D  +  +SD+ +    +  S+   +   + V F N+N       G+ + G L
Sbjct: 72  ELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKS----PGIKQGGKL 127

Query: 116 N 116
           N
Sbjct: 128 N 128


>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 461

 Score = 21.6 bits (44), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 36  IKDLRKKMREAGGGVKVAK-NRLVKI 60
           IK  RKK   AG G   AK N+L+K+
Sbjct: 394 IKHSRKKRIAAGSGTNAAKINKLLKL 419


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.133    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,341
Number of Sequences: 1233
Number of extensions: 3768
Number of successful extensions: 19
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 9
length of query: 172
length of database: 328,796
effective HSP length: 68
effective length of query: 104
effective length of database: 244,952
effective search space: 25475008
effective search space used: 25475008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)