HHsearch alignment for GI: 254780146 and conserved domain: CHL00129

>CHL00129 rpl1 ribosomal protein L1; Reviewed.
Probab=100.00  E-value=0  Score=535.27  Aligned_cols=228  Identities=45%  Similarity=0.768  Sum_probs=225.4

Q ss_pred             CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEC
Q ss_conf             74223437989851384768898999999986087899862999999537876454430137995277886540699975
Q gi|254780146|r    2 VSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFAT   81 (232)
Q Consensus         2 m~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~   81 (232)
T Consensus         1 m~k~~k~~~~~~~~~~-~k~y~~~eAi~~lk~~~~~kF~Esvdv~i~L~iD~k~~dq~irg~v~LPhg~gK~~kV~Vfa~   79 (229)
T CHL00129          1 MKKRSRRLKELLSKVE-PKLYSPIEAINLLKETATAKFVETAEAHIRLNIDPKYADQQLRTTVVLPKGTGKTVRIAVITN   79 (229)
T ss_pred             CCCCCHHHHHHHHHCC-CCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEEEEEEC
T ss_conf             9962589999997511-565799999999986276898875899999688987667602578989999998459999918


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             04457687412000027899999751753334688644677888864332001001742233566655799999986011
Q gi|254780146|r   82 SSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGA  161 (232)
Q Consensus        82 ~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~  161 (232)
T Consensus        80 g~~~~~Ak~aGAd~vG~~eli~~i~~g~~~fD~~iAtp~~M~~l~kLgriLGPrGlMPnPk~GTvt~di~~av~~~K~g~  159 (229)
T CHL00129         80 GEKINEAKNAGADIVGSEDLIDEIAKGRLDFDLLIATPDMMPKIAKLGRVLGPRGLMPSPKSGTVTTDLAEAINEFKKGK  159 (229)
T ss_pred             CHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCE
T ss_conf             13699998769959864878788757984454687661789999998575074457999999976606999999986890


Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHC
Q ss_conf             102235752678753157789899999999999999860866254433779999923897277400100
Q gi|254780146|r  162 VDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSF  230 (232)
Q Consensus       162 i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~  230 (232)
T Consensus       160 v~~r~dk~g~ih~~IGk~sf~~e~L~eNi~a~~~~i~~~kp~~~kg~~ik~i~issTMGp~i~id~~~l  228 (229)
T CHL00129        160 LEYRADKTGIVHVNFGKSNFSEEDLLENLKALQESIDQNRPSGVKGKYWKSFYICSTMGPSIQLDINSL  228 (229)
T ss_pred             EEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEHHHC
T ss_conf             899867888688876277589899999999999999973987658755978999899899889505555