HHsearch alignment for GI: 254780146 and conserved domain: CHL00129
>CHL00129 rpl1 ribosomal protein L1; Reviewed.
Probab=100.00 E-value=0 Score=535.27 Aligned_cols=228 Identities=45% Similarity=0.768 Sum_probs=225.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEC
Q ss_conf 74223437989851384768898999999986087899862999999537876454430137995277886540699975
Q gi|254780146|r 2 VSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFAT 81 (232)
Q Consensus 2 m~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~ 81 (232)
T Consensus 1 m~k~~k~~~~~~~~~~-~k~y~~~eAi~~lk~~~~~kF~Esvdv~i~L~iD~k~~dq~irg~v~LPhg~gK~~kV~Vfa~ 79 (229)
T CHL00129 1 MKKRSRRLKELLSKVE-PKLYSPIEAINLLKETATAKFVETAEAHIRLNIDPKYADQQLRTTVVLPKGTGKTVRIAVITN 79 (229)
T ss_pred CCCCCHHHHHHHHHCC-CCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEEEEEEC
T ss_conf 9962589999997511-565799999999986276898875899999688987667602578989999998459999918
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 04457687412000027899999751753334688644677888864332001001742233566655799999986011
Q gi|254780146|r 82 SSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGA 161 (232)
Q Consensus 82 ~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~ 161 (232)
T Consensus 80 g~~~~~Ak~aGAd~vG~~eli~~i~~g~~~fD~~iAtp~~M~~l~kLgriLGPrGlMPnPk~GTvt~di~~av~~~K~g~ 159 (229)
T CHL00129 80 GEKINEAKNAGADIVGSEDLIDEIAKGRLDFDLLIATPDMMPKIAKLGRVLGPRGLMPSPKSGTVTTDLAEAINEFKKGK 159 (229)
T ss_pred CHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCE
T ss_conf 13699998769959864878788757984454687661789999998575074457999999976606999999986890
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHC
Q ss_conf 102235752678753157789899999999999999860866254433779999923897277400100
Q gi|254780146|r 162 VDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSF 230 (232)
Q Consensus 162 i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~ 230 (232)
T Consensus 160 v~~r~dk~g~ih~~IGk~sf~~e~L~eNi~a~~~~i~~~kp~~~kg~~ik~i~issTMGp~i~id~~~l 228 (229)
T CHL00129 160 LEYRADKTGIVHVNFGKSNFSEEDLLENLKALQESIDQNRPSGVKGKYWKSFYICSTMGPSIQLDINSL 228 (229)
T ss_pred EEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEHHHC
T ss_conf 899867888688876277589899999999999999973987658755978999899899889505555