HHsearch alignment for GI: 254780146 and conserved domain: PTZ00029
>PTZ00029 60S ribosomal protein L1/L10a; Provisional.
Probab=100.00 E-value=0 Score=380.12 Aligned_cols=198 Identities=23% Similarity=0.368 Sum_probs=181.6
Q ss_pred CHHHHHHHHHH---CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCHH
Q ss_conf 98999999986---087899862999999537876454430137995277886540699975044576874120000278
Q gi|254780146|r 23 GLSDAVVMLKE---RATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGE 99 (232)
Q Consensus 23 si~eAi~~lk~---~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~ 99 (232)
T Consensus 8 ~l~~ai~~v~~~~~~kkrkF~ETVel~i~Lk~~d~~~dq~vrg~v~LP~g~gk~~kV~Vfa~g~~~~~Ak~agad~v~~e 87 (217)
T PTZ00029 8 TLNKAISAVLEGSKTKKRKFVETVELQIGLKDYDTQRDKRFSGTVVLQNVPRKNMKVCVFGDAVHCEEAQKLGLDYMDIE 87 (217)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHHHHCCCCEECHH
T ss_conf 99999999986364667788614999996688898767364678986899999867999907177789998599788799
Q ss_pred HHHHHHHCCC------CCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 9999975175------333468864467788886-433200100174223356665579999998601110223575267
Q gi|254780146|r 100 DLFEIVKGGQ------IDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGII 172 (232)
Q Consensus 100 eli~~i~~~~------~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i 172 (232)
T Consensus 88 dl~~~~k~k~~~kk~a~~~D~fiA~~~~m~~i~r~LGp~L~p~gKmP~~~--~~~~~i~~~i~~~k~-~v~~r~kk~~~i 164 (217)
T PTZ00029 88 GMKKFNKNKTLVKKLAKKYDAFLASQVLLPQIPRLLGPGLNKAGKFPTQI--THNDKIEDKINELKS-SIKFQLKKVLCM 164 (217)
T ss_pred HHHHHHCCHHHHHHHHHHCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHC-EEEEEECCCCEE
T ss_conf 99976325079998763268799755898888887563466679989877--898889999999850-489996786678
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 87531577898999999999999998608662544337799999238972774
Q gi|254780146|r 173 HAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKV 225 (232)
Q Consensus 173 ~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~i 225 (232)
T Consensus 165 h~~VG~~~m~~e~l~eNi~~~i~~l~~~l~~--~~~nIk~v~iksTMGp~vrv 215 (217)
T PTZ00029 165 GVAVGNVNMTEEELRANIVLAINFLVSLLKK--NWHNIRGLTIKSTMGKPQRI 215 (217)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCCCEEEEECCCCCCEEC
T ss_conf 7877168799899999999999999986213--56772259998899988772