HHsearch alignment of GI: 254780146 and MMDB domain: 1i2a_A_1-54_149-219
>1i2a_A (A:1-54,A:149-219) 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=4.5e-28 Score=194.20 Aligned_cols=118 Identities=23% Similarity=0.300 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHCC-CCCCCCCEEEEEEE-CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCHH
Q ss_conf 89899999998608-78998629999995-37876454430137995277886540699975044576874120000278
Q gi|254780146|r 22 YGLSDAVVMLKERA-TARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGE 99 (232)
Q Consensus 22 ysi~eAi~~lk~~~-~~kf~esvel~i~L-~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~ 99 (232)
+++.||++.+++.. .+||+||||++++| |+|++|++|+|||+|.||||+
T Consensus 4 ~~l~eai~~~~~~~~~~kF~esve~~~~Lk~iD~~k~dq~vrg~v~LP~gt----------------------------- 54 (125)
T 1i2a_A 4 EALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGR----------------------------- 54 (125)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCC-----------------------------
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCC-----------------------------
T ss_conf 999999999998566458774399999447778876665257999899998-----------------------------
Q ss_pred HHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCC
Q ss_conf 99999751753334688644677888864332001001742233566655799999986011102235752678753157
Q gi|254780146|r 100 DLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKV 179 (232)
Q Consensus 100 eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i~~~IG~~ 179 (232)
+++||+|+.|++|++||++
T Consensus 55 -------------------------------------------------------------~V~~r~dk~~~ihv~VGk~ 73 (125)
T 1i2a_A 55 -------------------------------------------------------------TVVINTRDKPYFQVLVGNE 73 (125)
T ss_dssp -------------------------------------------------------------EEEEECTTSSEEEEEEEET
T ss_pred -------------------------------------------------------------CEEEEECCCCEEEEEECCC
T ss_conf -------------------------------------------------------------5466523675144543036
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHCC
Q ss_conf 7898999999999999998608662544337799999238972774001005
Q gi|254780146|r 180 SFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS 231 (232)
Q Consensus 180 ~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~~ 231 (232)
+|+++||.||+.+++++|.+.+|.+. .||+++|||||||||++||+++++
T Consensus 74 sf~~e~l~ENi~a~i~~i~~~~p~g~--k~Iksi~iksTMGp~v~V~~~~~~ 123 (125)
T 1i2a_A 74 KMTDEQIVDNIEAVLNVVAKKYEKGL--YHIKDAYVKLTMGPAVKVKKEKAK 123 (125)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHSTTGG--GGEEEEEEEETTSCCEECC-----
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEEEECCCCCCEEEECHHHC
T ss_conf 58989999999999999986286886--248999998999999998653530