HHsearch alignment of GI: 254780146 and MMDB domain: 2noq_G_1-56_150-213
>2noq_G (G:1-56,G:150-213) 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_A
Probab=99.85 E-value=2.2e-20 Score=146.46 Aligned_cols=111 Identities=23% Similarity=0.346 Sum_probs=96.2
Q ss_pred CHHHHHHHHH-H---CCCCCCCCCEEEEEEEC-CCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCC
Q ss_conf 9899999998-6---08789986299999953-78764544301379952778865406999750445768741200002
Q gi|254780146|r 23 GLSDAVVMLK-E---RATARFDETVEIAMNLG-IDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVG 97 (232)
Q Consensus 23 si~eAi~~lk-~---~~~~kf~esvel~i~L~-id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg 97 (232)
.+.||+..+- . .+.++|.|||||+|.|+ .|| +.|.+|.|+|.|||-.
T Consensus 5 ~l~~~v~~~l~~~~~~k~r~f~etvelqi~lknydp-qkdkrfsgtv~l~~~p--------------------------- 56 (120)
T 2noq_G 5 QVREHVKELLKYSNETKKRNFLETVELQVGLKNYDP-QRDKRFSGSLKLPNCP--------------------------- 56 (120)
T ss_dssp HHHHHHHHHHHHCCSSSSCSSCCEEEEEEEECSCCT-TSTTCCEEEEECTTCC---------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC-CCCCCCCEEEECCCCC---------------------------
T ss_conf 999999999998775464579852999998478888-6565242589789988---------------------------
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEC
Q ss_conf 78999997517533346886446778888643320010017422335666557999999860111022357526787531
Q gi|254780146|r 98 GEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIG 177 (232)
Q Consensus 98 ~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i~~~IG 177 (232)
|+++||+++.+++|++||
T Consensus 57 --------------------------------------------------------------gtVkfr~kK~~~l~v~VG 74 (120)
T 2noq_G 57 --------------------------------------------------------------STIKFQLKKVLCLAVAVG 74 (120)
T ss_dssp --------------------------------------------------------------CEEEEECTTSSEEEEEEE
T ss_pred --------------------------------------------------------------CCEEEECCCCCEEEEEEC
T ss_conf --------------------------------------------------------------566884079867999863
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 577898999999999999998608662544337799999238972774
Q gi|254780146|r 178 KVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKV 225 (232)
Q Consensus 178 ~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~i 225 (232)
+++|++|||.||+.+++++|.+.+|.+. +||+++||+|||||+++|
T Consensus 75 ~~smt~eeL~eNi~a~in~Lvsllpk~~--knIksi~IKSTMGp~vrI 120 (120)
T 2noq_G 75 NVEMEEDVLVNQILMSVNFFVSLLKKNW--QNVGSLVVKSSMGPAFRL 120 (120)
T ss_dssp ESSSCHHHHHHHHHHHHHHHHHHSSSGG--GGEEEEEEEESSSCCEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCC--CCEEEEEEECCCCCCCCC
T ss_conf 6789999999999999999986354567--647689998998977129