HHsearch alignment of GI: 254780146 and MMDB domain: 2noq_G_1-56_150-213

>2noq_G (G:1-56,G:150-213) 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_A
Probab=99.85  E-value=2.2e-20  Score=146.46  Aligned_cols=111  Identities=23%  Similarity=0.346  Sum_probs=96.2

Q ss_pred             CHHHHHHHHH-H---CCCCCCCCCEEEEEEEC-CCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCC
Q ss_conf             9899999998-6---08789986299999953-78764544301379952778865406999750445768741200002
Q gi|254780146|r   23 GLSDAVVMLK-E---RATARFDETVEIAMNLG-IDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVG   97 (232)
Q Consensus        23 si~eAi~~lk-~---~~~~kf~esvel~i~L~-id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg   97 (232)
                      .+.||+..+- .   .+.++|.|||||+|.|+ .|| +.|.+|.|+|.|||-.                           
T Consensus         5 ~l~~~v~~~l~~~~~~k~r~f~etvelqi~lknydp-qkdkrfsgtv~l~~~p---------------------------   56 (120)
T 2noq_G            5 QVREHVKELLKYSNETKKRNFLETVELQVGLKNYDP-QRDKRFSGSLKLPNCP---------------------------   56 (120)
T ss_dssp             HHHHHHHHHHHHCCSSSSCSSCCEEEEEEEECSCCT-TSTTCCEEEEECTTCC---------------------------
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC-CCCCCCCEEEECCCCC---------------------------
T ss_conf             999999999998775464579852999998478888-6565242589789988---------------------------


Q ss_pred             HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEC
Q ss_conf             78999997517533346886446778888643320010017422335666557999999860111022357526787531
Q gi|254780146|r   98 GEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIG  177 (232)
Q Consensus        98 ~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i~~~IG  177 (232)
                                                                                    |+++||+++.+++|++||
T Consensus        57 --------------------------------------------------------------gtVkfr~kK~~~l~v~VG   74 (120)
T 2noq_G           57 --------------------------------------------------------------STIKFQLKKVLCLAVAVG   74 (120)
T ss_dssp             --------------------------------------------------------------CEEEEECTTSSEEEEEEE
T ss_pred             --------------------------------------------------------------CCEEEECCCCCEEEEEEC
T ss_conf             --------------------------------------------------------------566884079867999863


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf             577898999999999999998608662544337799999238972774
Q gi|254780146|r  178 KVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKV  225 (232)
Q Consensus       178 ~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~i  225 (232)
                      +++|++|||.||+.+++++|.+.+|.+.  +||+++||+|||||+++|
T Consensus        75 ~~smt~eeL~eNi~a~in~Lvsllpk~~--knIksi~IKSTMGp~vrI  120 (120)
T 2noq_G           75 NVEMEEDVLVNQILMSVNFFVSLLKKNW--QNVGSLVVKSSMGPAFRL  120 (120)
T ss_dssp             ESSSCHHHHHHHHHHHHHHHHHHSSSGG--GGEEEEEEEESSSCCEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCC--CCEEEEEEECCCCCCCCC
T ss_conf             6789999999999999999986354567--647689998998977129