HHsearch alignment of GI: 254780146 and MMDB domain: 2noq_G_57-149
>2noq_G (G:57-149) 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_A
Probab=99.93 E-value=1.4e-26 Score=184.84 Aligned_cols=86 Identities=23% Similarity=0.376 Sum_probs=79.5
Q ss_pred CCCCCEEEEECHHHHHHHHHCCCCCCCHHHHHHH------HHCCCCCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCC
Q ss_conf 8654069997504457687412000027899999------75175333468864467788886-4332001001742233
Q gi|254780146|r 71 GVNVRVAVFATSSKADEAREAGADIVGGEDLFEI------VKGGQIDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRV 143 (232)
Q Consensus 71 gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~eli~~------i~~~~~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~ 143 (232)
.++.+|||||+++++++|+++||+++|++||++. ++++|.+||+|||||++||+|++ |||+||||||||||++
T Consensus 1 rk~~kI~Vf~~~~~~~~A~~aGa~~vg~eeL~~~~k~~k~~kk~~~~~d~~ia~~~~m~~l~k~lg~~LGprgkmP~~k~ 80 (93)
T 2noq_G 1 RPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS 80 (93)
T ss_dssp SCCCCEEEEECTTHHHHHHHHTCEEEETTHHHHHHHCHHHHHHHHHHCSEEEEEGGGGTHHHHHTHHHHHHHTCCCEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 87716999726512677765200224668888886201678877520688996505776777654123203553234666
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 566655799999986
Q gi|254780146|r 144 GTVTTDVATAVRESK 158 (232)
Q Consensus 144 GTv~~di~~~i~~~k 158 (232)
|| .|+.++|+++|
T Consensus 81 gt--~di~~~i~~~k 93 (93)
T 2noq_G 81 HN--DDLYGKVTDVR 93 (93)
T ss_dssp TT--CCCHHHHHHHC
T ss_pred CC--CCHHHHHHHHH
T ss_conf 53--43999999985