HHsearch alignment of GI: 254780146 and MMDB domain: 3bbo_D_1-183_272-352
>3bbo_D (D:1-183,D:272-352) Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.1e-40 Score=272.43 Aligned_cols=143 Identities=34% Similarity=0.564 Sum_probs=139.0
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEE
Q ss_conf 97422343798985138476889899999998608789986299999953787645443013799527788654069997
Q gi|254780146|r 1 MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFA 80 (232)
Q Consensus 1 mm~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~ 80 (232)
||.|++|||+++.+.+|..+.|++.|||+++|+.+.+|||||||++++||+|++++||+|||+|.||||+.
T Consensus 114 ~m~k~~Kr~~~~~~~vd~~k~Y~l~eAi~l~K~~a~aKFdETVev~v~L~iDpkksDQ~vRGtv~LPhGtk--------- 184 (264)
T 3bbo_D 114 SDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTK--------- 184 (264)
T ss_dssp --CCCCCSSTTTTTSCCSSSCCCTTTTHHHHSTTCCSSSCCEECCEEEECSCTTSSTTCCEEEECCTTTST---------
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCC---------
T ss_conf 24440788999985145567669999999999746688674299999968888777772588998898888---------
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 50445768741200002789999975175333468864467788886433200100174223356665579999998601
Q gi|254780146|r 81 TSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSG 160 (232)
Q Consensus 81 ~~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g 160 (232)
|
T Consensus 185 -------------------------------------------------------------------------------G 185 (264)
T 3bbo_D 185 -------------------------------------------------------------------------------G 185 (264)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
T ss_conf -------------------------------------------------------------------------------9
Q ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHCC
Q ss_conf 11022357526787531577898999999999999998608662544337799999238972774001005
Q gi|254780146|r 161 AVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS 231 (232)
Q Consensus 161 ~i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~~ 231 (232)
+++||+||.|+||++||+++|+++||.||+.+++++|.+.+|++.||+||+++|||||||||++||+.+++
T Consensus 186 kVefR~DK~GiIhv~IGK~sF~~eqL~ENi~Avl~~I~k~KPs~~KG~yIksv~ISSTMGPgIkId~~~~~ 256 (264)
T 3bbo_D 186 KVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREML 256 (264)
T ss_dssp CEEEECCSSCEECCCCEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEECCBSSSCCCEECTTC--
T ss_pred CEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEHHHHC
T ss_conf 38984278867998760788999999999999999999749654588668899998999998898736704