HHsearch alignment of GI: 254780146 and MMDB domain: 3bbo_D_1-183_272-352

>3bbo_D (D:1-183,D:272-352) Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00  E-value=1.1e-40  Score=272.43  Aligned_cols=143  Identities=34%  Similarity=0.564  Sum_probs=139.0

Q ss_pred             CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEE
Q ss_conf             97422343798985138476889899999998608789986299999953787645443013799527788654069997
Q gi|254780146|r    1 MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFA   80 (232)
Q Consensus         1 mm~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~   80 (232)
                      ||.|++|||+++.+.+|..+.|++.|||+++|+.+.+|||||||++++||+|++++||+|||+|.||||+.         
T Consensus       114 ~m~k~~Kr~~~~~~~vd~~k~Y~l~eAi~l~K~~a~aKFdETVev~v~L~iDpkksDQ~vRGtv~LPhGtk---------  184 (264)
T 3bbo_D          114 SDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTK---------  184 (264)
T ss_dssp             --CCCCCSSTTTTTSCCSSSCCCTTTTHHHHSTTCCSSSCCEECCEEEECSCTTSSTTCCEEEECCTTTST---------
T ss_pred             CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCC---------
T ss_conf             24440788999985145567669999999999746688674299999968888777772588998898888---------


Q ss_pred             CHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             50445768741200002789999975175333468864467788886433200100174223356665579999998601
Q gi|254780146|r   81 TSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSG  160 (232)
Q Consensus        81 ~~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g  160 (232)
                                                                                                     |
T Consensus       185 -------------------------------------------------------------------------------G  185 (264)
T 3bbo_D          185 -------------------------------------------------------------------------------G  185 (264)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------C
T ss_conf             -------------------------------------------------------------------------------9


Q ss_pred             CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHCC
Q ss_conf             11022357526787531577898999999999999998608662544337799999238972774001005
Q gi|254780146|r  161 AVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS  231 (232)
Q Consensus       161 ~i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~~  231 (232)
                      +++||+||.|+||++||+++|+++||.||+.+++++|.+.+|++.||+||+++|||||||||++||+.+++
T Consensus       186 kVefR~DK~GiIhv~IGK~sF~~eqL~ENi~Avl~~I~k~KPs~~KG~yIksv~ISSTMGPgIkId~~~~~  256 (264)
T 3bbo_D          186 KVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREML  256 (264)
T ss_dssp             CEEEECCSSCEECCCCEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEECCBSSSCCCEECTTC--
T ss_pred             CEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEHHHHC
T ss_conf             38984278867998760788999999999999999999749654588668899998999998898736704