HHsearch alignment of GI: 254780146 and MMDB domain: 3fik_5_1-71_134-234
>3fik_5 (5:1-71,5:134-234) 50S ribosomal protein L1; ribosome, decoding, tRNA, EF-TU, ternary complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding; 6.70A {Escherichia coli} PDB: 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=0 Score=329.46 Aligned_cols=168 Identities=49% Similarity=0.846 Sum_probs=164.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEC
Q ss_conf 74223437989851384768898999999986087899862999999537876454430137995277886540699975
Q gi|254780146|r 2 VSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFAT 81 (232)
Q Consensus 2 m~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~ 81 (232)
|+|+||||+++.+.+|..+.|+++||++++++.+.+|||||||++++|++|++++||++||+|.||||+|
T Consensus 1 m~k~~k~~~~~~~~~~~~~~y~~~ea~~~~k~~~~~kFdetve~~~~l~id~~~~dq~vRg~v~lP~g~g---------- 70 (172)
T 3fik_5 1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTG---------- 70 (172)
T ss_dssp CCCSCHHHHHHHHHSCCCCCBCHHHHHHHHHHTCCSSSCCEEEEEEECCCCCSSSCCCCCBCCBCSSCCS----------
T ss_pred CCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCC----------
T ss_conf 9841489999886166355669999999999727789875189999987656543323320353113566----------
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 04457687412000027899999751753334688644677888864332001001742233566655799999986011
Q gi|254780146|r 82 SSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGA 161 (232)
Q Consensus 82 ~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~ 161 (232)
.|||||||+.||+++|+.++|+++++|+
T Consensus 71 ----------------------------------------------------kkglMPnpk~gTvt~Dl~~~I~~~k~Gt 98 (172)
T 3fik_5 71 ----------------------------------------------------RRGLMPNPKVGTVTPNVAEAVKNAKAGQ 98 (172)
T ss_dssp ----------------------------------------------------SSSSSCCSCCSCCCCCSHHHHHHHHHCB
T ss_pred ----------------------------------------------------CCCCCCCCCCCCCCCCHHHHHHHHHCCE
T ss_conf ----------------------------------------------------4666688898987614999999985883
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHCC
Q ss_conf 1022357526787531577898999999999999998608662544337799999238972774001005
Q gi|254780146|r 162 VDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS 231 (232)
Q Consensus 162 i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~~ 231 (232)
++||+++.|++|++||+++|+++||.||+.+++++|.+++|.+.+|+||+++||+||||||++||+++|.
T Consensus 99 v~fr~dk~g~i~v~IGk~sm~~eqI~ENi~a~i~~I~~~~P~~~kg~~Iksi~iksTmgp~i~I~~~~~~ 168 (172)
T 3fik_5 99 VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLS 168 (172)
T ss_dssp CCBCBCSSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHSCCTTTTSCCCSSEEECCSSSCCEEESCSSSS
T ss_pred EEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEHHHHH
T ss_conf 8995157746888753456998999999999999999839664467458889998999998898878956