Query gi|254780146|ref|YP_003064559.1| 50S ribosomal protein L1 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 232
No_of_seqs 118 out of 1923
Neff 6.3
Searched_HMMs 33803
Date Sun May 22 20:09:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780146.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2ftc_A Mitochondrial ribosoma 100.0 0 0 394.0 18.3 185 43-230 1-188 (189)
2 >3fik_5 50S ribosomal protein 100.0 0 0 329.5 15.7 168 2-231 1-168 (172)
3 >3bbo_D Ribosomal protein L1; 100.0 1.1E-40 2.8E-45 272.4 7.6 143 1-231 114-256 (264)
4 >1ad2_A TL2, ribosomal protein 100.0 6.5E-38 1.9E-42 255.2 13.7 137 3-229 1-137 (137)
5 >1ad2_A TL2, ribosomal protein 100.0 3.1E-31 9.2E-36 213.8 8.1 90 71-160 1-91 (91)
6 >3bbo_D Ribosomal protein L1; 100.0 1.1E-31 3.2E-36 216.6 5.1 88 71-158 1-88 (88)
7 >2zkr_5 60S ribosomal protein 100.0 5.4E-29 1.6E-33 199.9 14.7 114 21-225 3-118 (119)
8 >1mzp_A 50S ribosomal protein 100.0 1.3E-29 3.7E-34 203.8 10.3 119 16-226 3-122 (123)
9 >1i2a_A 50S ribosomal protein 100.0 4.5E-28 1.3E-32 194.2 13.6 118 22-231 4-123 (125)
10 >1mzp_A 50S ribosomal protein 99.9 1.9E-27 5.6E-32 190.3 7.8 86 71-158 1-94 (94)
11 >1i2a_A 50S ribosomal protein 99.9 1.6E-27 4.8E-32 190.7 7.3 87 71-159 1-94 (94)
12 >2zkr_5 60S ribosomal protein 99.9 3E-27 8.8E-32 189.1 6.6 86 71-158 1-93 (93)
13 >2ov7_A 50S ribosomal protein 99.9 4.3E-28 1.3E-32 194.3 0.1 118 104-229 3-120 (120)
14 >2noq_G 60S ribosomal protein 99.9 1.4E-26 4.3E-31 184.8 5.9 86 71-158 1-93 (93)
15 >2noq_G 60S ribosomal protein 99.9 2.2E-20 6.6E-25 146.5 14.2 111 23-225 5-120 (120)
16 >3fik_5 50S ribosomal protein 99.8 7.9E-21 2.3E-25 149.3 -1.8 62 73-134 1-62 (62)
17 >2aze_B Transcription factor E 34.6 20 0.00059 16.5 1.6 14 211-224 33-46 (52)
18 >1q16_A Respiratory nitrate re 31.5 32 0.00096 15.2 2.3 28 83-112 216-243 (339)
19 >3i1n_I 50S ribosomal protein 29.2 32 0.00096 15.2 2.0 47 127-177 23-72 (84)
20 >2vqp_A Matrix protein; viral 27.4 41 0.0012 14.6 2.2 46 170-230 33-78 (124)
21 >1pii_A N-(5'phosphoribosyl)an 27.4 35 0.001 15.0 1.9 26 72-97 64-92 (212)
22 >3gqv_A Enoyl reductase; mediu 27.2 42 0.0012 14.5 4.1 52 73-124 62-120 (156)
23 >1nsj_A PRAI, phosphoribosyl a 25.9 17 0.0005 17.0 0.0 39 72-110 53-99 (205)
24 >1tvm_A PTS system, galactitol 25.1 19 0.00056 16.7 0.2 53 70-122 18-80 (95)
25 >3bkw_A MLL3908 protein, S-ade 24.8 46 0.0014 14.2 3.8 86 70-155 41-161 (201)
26 >3dzc_A UDP-N-acetylglucosamin 22.3 52 0.0015 13.9 4.7 22 61-82 13-34 (211)
27 >1k1g_A SF1-BO isoform; splici 21.7 22 0.00066 16.2 -0.0 17 120-136 16-32 (131)
28 >1x1o_A Nicotinate-nucleotide 21.1 55 0.0016 13.8 2.7 76 19-97 10-91 (143)
29 >1xpp_A TA1416, DNA-directed R 20.8 56 0.0016 13.7 2.1 51 62-112 51-103 (115)
30 >1uuf_A YAHK, zinc-type alcoho 20.4 36 0.0011 14.9 0.9 64 75-140 49-115 (143)
31 >1vky_A S-adenosylmethionine:t 20.2 40 0.0012 14.6 1.0 46 73-120 72-117 (250)
No 1
>>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (A:)
Probab=100.00 E-value=0 Score=394.02 Aligned_cols=185 Identities=22% Similarity=0.452 Sum_probs=178.2
Q ss_pred EEEEEEECCCCCCCCCCCEEEEEECCCCCCCC-CEEEEECH-HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHH
Q ss_conf 99999953787645443013799527788654-06999750-44576874120000278999997517533346886446
Q gi|254780146|r 43 VEIAMNLGIDPRHANQMVRGVVTMPNGTGVNV-RVAVFATS-SKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD 120 (232)
Q Consensus 43 vel~i~L~id~~k~~~~irg~v~LPh~~gk~~-kV~Vf~~~-~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~ 120 (232)
||++++|+++++|+++++||+|.|||+++++. ||||||++ +.+++|++|||++||++|||++|++||++||+|||||+
T Consensus 1 idl~l~l~~~~kk~~~~~rg~v~LPh~~~k~~~kv~Vfa~~~~~~~~A~~aGA~~vG~~eli~kI~~g~~~~D~~ia~~~ 80 (189)
T 2ftc_A 1 LDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPE 80 (189)
T ss_pred CEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEECHH
T ss_conf 95999917787667663678997789999843699998488256999985565201367788898726622450023177
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7788886433200100174223356665579999998601-110223575267875315778989999999999999986
Q gi|254780146|r 121 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSG-AVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVK 199 (232)
Q Consensus 121 ~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g-~i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~ 199 (232)
|||+|++|||+|||| |||||.||+++|+.++|+++++| +++||.++.|++|++||+++|+++||.||+.+++++|++
T Consensus 81 ~m~~l~klg~iLGpk--mP~~k~gTv~~di~~~i~~~k~g~~~~~r~~k~g~i~~~IG~~~m~~e~l~eNi~~~i~~i~~ 158 (189)
T 2ftc_A 81 IMPELNRLRKKLNKK--YPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCR 158 (189)
T ss_pred HHHHHHHHHHHHCCC--CCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 899899999875235--888776656754899999973694566503544168851366667889999999999999997
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCEEEECHHC
Q ss_conf 0866254433779999923897277400100
Q gi|254780146|r 200 AKPSVAKGDYVKRVTLSSTMGCGIKVDLSSF 230 (232)
Q Consensus 200 ~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~ 230 (232)
++|.+. |+||+++|||||||||++||+++|
T Consensus 159 ~kp~~~-g~~i~~~~i~stmgp~~~i~~~~~ 188 (189)
T 2ftc_A 159 HRPLNL-GPFVVRAFLRSSTSEGLLLKIDPL 188 (189)
T ss_pred HCCCCC-CCCEEEEEEECCCCCCEEEECCCC
T ss_conf 287456-872889999898999721546878
No 2
>>3fik_5 50S ribosomal protein L1; ribosome, decoding, tRNA, EF-TU, ternary complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding; 6.70A {Escherichia coli} PDB: 2rdo_9 2gya_2 2gyc_2 (5:1-71,5:134-234)
Probab=100.00 E-value=0 Score=329.46 Aligned_cols=168 Identities=49% Similarity=0.846 Sum_probs=164.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEC
Q ss_conf 74223437989851384768898999999986087899862999999537876454430137995277886540699975
Q gi|254780146|r 2 VSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFAT 81 (232)
Q Consensus 2 m~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~ 81 (232)
|+|+||||+++.+.+|..+.|+++||++++++.+.+|||||||++++|++|++++||++||+|.||||+|
T Consensus 1 m~k~~k~~~~~~~~~~~~~~y~~~ea~~~~k~~~~~kFdetve~~~~l~id~~~~dq~vRg~v~lP~g~g---------- 70 (172)
T 3fik_5 1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTG---------- 70 (172)
T ss_dssp CCCSCHHHHHHHHHSCCCCCBCHHHHHHHHHHTCCSSSCCEEEEEEECCCCCSSSCCCCCBCCBCSSCCS----------
T ss_pred CCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCC----------
T ss_conf 9841489999886166355669999999999727789875189999987656543323320353113566----------
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 04457687412000027899999751753334688644677888864332001001742233566655799999986011
Q gi|254780146|r 82 SSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGA 161 (232)
Q Consensus 82 ~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~ 161 (232)
.|||||||+.||+++|+.++|+++++|+
T Consensus 71 ----------------------------------------------------kkglMPnpk~gTvt~Dl~~~I~~~k~Gt 98 (172)
T 3fik_5 71 ----------------------------------------------------RRGLMPNPKVGTVTPNVAEAVKNAKAGQ 98 (172)
T ss_dssp ----------------------------------------------------SSSSSCCSCCSCCCCCSHHHHHHHHHCB
T ss_pred ----------------------------------------------------CCCCCCCCCCCCCCCCHHHHHHHHHCCE
T ss_conf ----------------------------------------------------4666688898987614999999985883
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHCC
Q ss_conf 1022357526787531577898999999999999998608662544337799999238972774001005
Q gi|254780146|r 162 VDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS 231 (232)
Q Consensus 162 i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~~ 231 (232)
++||+++.|++|++||+++|+++||.||+.+++++|.+++|.+.+|+||+++||+||||||++||+++|.
T Consensus 99 v~fr~dk~g~i~v~IGk~sm~~eqI~ENi~a~i~~I~~~~P~~~kg~~Iksi~iksTmgp~i~I~~~~~~ 168 (172)
T 3fik_5 99 VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLS 168 (172)
T ss_dssp CCBCBCSSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHSCCTTTTSCCCSSEEECCSSSCCEEESCSSSS
T ss_pred EEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEHHHHH
T ss_conf 8995157746888753456998999999999999999839664467458889998999998898878956
No 3
>>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (D:1-183,D:272-352)
Probab=100.00 E-value=1.1e-40 Score=272.43 Aligned_cols=143 Identities=34% Similarity=0.564 Sum_probs=139.0
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEE
Q ss_conf 97422343798985138476889899999998608789986299999953787645443013799527788654069997
Q gi|254780146|r 1 MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFA 80 (232)
Q Consensus 1 mm~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~ 80 (232)
||.|++|||+++.+.+|..+.|++.|||+++|+.+.+|||||||++++||+|++++||+|||+|.||||+.
T Consensus 114 ~m~k~~Kr~~~~~~~vd~~k~Y~l~eAi~l~K~~a~aKFdETVev~v~L~iDpkksDQ~vRGtv~LPhGtk--------- 184 (264)
T 3bbo_D 114 SDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTK--------- 184 (264)
T ss_dssp --CCCCCSSTTTTTSCCSSSCCCTTTTHHHHSTTCCSSSCCEECCEEEECSCTTSSTTCCEEEECCTTTST---------
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCC---------
T ss_conf 24440788999985145567669999999999746688674299999968888777772588998898888---------
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 50445768741200002789999975175333468864467788886433200100174223356665579999998601
Q gi|254780146|r 81 TSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSG 160 (232)
Q Consensus 81 ~~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g 160 (232)
|
T Consensus 185 -------------------------------------------------------------------------------G 185 (264)
T 3bbo_D 185 -------------------------------------------------------------------------------G 185 (264)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
T ss_conf -------------------------------------------------------------------------------9
Q ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHCC
Q ss_conf 11022357526787531577898999999999999998608662544337799999238972774001005
Q gi|254780146|r 161 AVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS 231 (232)
Q Consensus 161 ~i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~~ 231 (232)
+++||+||.|+||++||+++|+++||.||+.+++++|.+.+|++.||+||+++|||||||||++||+.+++
T Consensus 186 kVefR~DK~GiIhv~IGK~sF~~eqL~ENi~Avl~~I~k~KPs~~KG~yIksv~ISSTMGPgIkId~~~~~ 256 (264)
T 3bbo_D 186 KVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREML 256 (264)
T ss_dssp CEEEECCSSCEECCCCEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEECCBSSSCCCEECTTC--
T ss_pred CEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEHHHHC
T ss_conf 38984278867998760788999999999999999999749654588668899998999998898736704
No 4
>>1ad2_A TL2, ribosomal protein L1; RNA binding, protein synthesis, mutant; 1.90A {Thermus thermophilus} (A:1-68,A:160-228)
Probab=100.00 E-value=6.5e-38 Score=255.23 Aligned_cols=137 Identities=40% Similarity=0.728 Sum_probs=132.8
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEECH
Q ss_conf 42234379898513847688989999999860878998629999995378764544301379952778865406999750
Q gi|254780146|r 3 SKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFATS 82 (232)
Q Consensus 3 ~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~ 82 (232)
.|+||||+++.+.+|..+.|+++||++++++.+.+|||||||++++||+||+|+||+|||+|.||||+
T Consensus 1 pk~~Kr~~~~~~~v~~~~~y~~~eAi~l~k~~~~aKFdetve~~~~L~iDprk~dQ~vRg~v~LP~G~------------ 68 (137)
T 1ad2_A 1 PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGL------------ 68 (137)
T ss_dssp ----CCCTTTTTSCCTTCCBCHHHHHHHHHTTCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSC------------
T ss_pred CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCC------------
T ss_conf 97248899988515756676999999999982789988528999997446765452201145412666------------
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 44576874120000278999997517533346886446778888643320010017422335666557999999860111
Q gi|254780146|r 83 SKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAV 162 (232)
Q Consensus 83 ~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i 162 (232)
++
T Consensus 69 ------------------------------------------------------------------------------~V 70 (137)
T 1ad2_A 69 ------------------------------------------------------------------------------RI 70 (137)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------EE
T ss_conf ------------------------------------------------------------------------------58
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHH
Q ss_conf 0223575267875315778989999999999999986086625443377999992389727740010
Q gi|254780146|r 163 DFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSS 229 (232)
Q Consensus 163 ~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~ 229 (232)
+||+|+.|+||++||+++|+++||.||+.+++++|.+.+|.+.||.||+++|||||||||++||+++
T Consensus 71 efR~dk~g~ih~~IGk~sf~~e~L~eNi~a~i~~i~k~kP~~~Kg~yIk~i~issTMGPgi~Id~~s 137 (137)
T 1ad2_A 71 EFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS 137 (137)
T ss_dssp EEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEEEECTTSCCEEECTTC
T ss_pred EEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEECCCC
T ss_conf 9864788646202220258999999999999999998495645787486999989989897829999
No 5
>>1ad2_A TL2, ribosomal protein L1; RNA binding, protein synthesis, mutant; 1.90A {Thermus thermophilus} (A:69-159)
Probab=99.97 E-value=3.1e-31 Score=213.80 Aligned_cols=90 Identities=51% Similarity=0.859 Sum_probs=88.1
Q ss_pred CCCCCEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 865406999750445768741200002789999975175333468864467788886-4332001001742233566655
Q gi|254780146|r 71 GVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTD 149 (232)
Q Consensus 71 gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~d 149 (232)
|++.||||||+++.+++|+++||++||++||+++|+++|++||+|||||+|||+|++ +||+||||||||||+.||+++|
T Consensus 1 Gk~~kI~Vf~~~~~~~~A~~aGa~~vg~~eli~~ik~~~~~~d~~la~~~~m~~l~~~lg~iLGprglmP~~k~gTv~~d 80 (91)
T 1ad2_A 1 GKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFN 80 (91)
T ss_dssp STTSCEEEECCTHHHHHHHHTTCSEEECGGGHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCSCCTTTTCBCSC
T ss_pred CCCCEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 54301321067678999987687202727777888568852126876799999999865120376567998777886556
Q ss_pred HHHHHHHHHCC
Q ss_conf 79999998601
Q gi|254780146|r 150 VATAVRESKSG 160 (232)
Q Consensus 150 i~~~i~~~k~g 160 (232)
|.++|+++++|
T Consensus 81 i~~~i~~~k~G 91 (91)
T 1ad2_A 81 IGEIIREIKAG 91 (91)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
T ss_conf 99999998588
No 6
>>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (D:184-271)
Probab=99.97 E-value=1.1e-31 Score=216.65 Aligned_cols=88 Identities=61% Similarity=0.948 Sum_probs=86.0
Q ss_pred CCCCCEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 86540699975044576874120000278999997517533346886446778888643320010017422335666557
Q gi|254780146|r 71 GVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDV 150 (232)
Q Consensus 71 gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di 150 (232)
||+.+|||||+++.+++|++|||++||++|||++|+++|++||+|||||++||+|++|||+||||||||||+.||+++||
T Consensus 1 Gk~~kV~Vf~~~e~~~~A~~aGA~~vG~~eli~~I~~~~~~~d~~ia~~~~m~~l~~lg~iLGPrglMP~~k~gTv~~di 80 (88)
T 3bbo_D 1 GKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNV 80 (88)
T ss_dssp SSSSCEEEECCTTTTHHHHTTTCSEEECTTTHHHHTTTCCCCSEEEECSSSHHHHGGGGGTTTTTTCSCCTTTTCBSSCH
T ss_pred CCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCH
T ss_conf 87536999617255999986310213145667776336632001111614555553431110000024567888878318
Q ss_pred HHHHHHHH
Q ss_conf 99999986
Q gi|254780146|r 151 ATAVRESK 158 (232)
Q Consensus 151 ~~~i~~~k 158 (232)
.++|+++|
T Consensus 81 ~~~I~~~K 88 (88)
T 3bbo_D 81 AQAVEEFK 88 (88)
T ss_dssp HHHHTTTT
T ss_pred HHHHHHHH
T ss_conf 99999985
No 7
>>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (5:1-54,5:148-212)
Probab=99.96 E-value=5.4e-29 Score=199.90 Aligned_cols=114 Identities=25% Similarity=0.375 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHCCC-CCCCCCEEEEEEE-CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCH
Q ss_conf 8898999999986087-8998629999995-3787645443013799527788654069997504457687412000027
Q gi|254780146|r 21 LYGLSDAVVMLKERAT-ARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGG 98 (232)
Q Consensus 21 ~ysi~eAi~~lk~~~~-~kf~esvel~i~L-~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~ 98 (232)
.|++.||++.+++.++ +||+||||++++| |+|++|++|++||+|.||||+|
T Consensus 3 ~~~l~eai~~~~~~~~~~kF~esVe~~i~Lk~iD~~k~dq~vrg~v~LP~g~g--------------------------- 55 (119)
T 2zkr_5 3 DQEIENAVSRALEDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTN--------------------------- 55 (119)
T ss_dssp CTTHHHHHHHHHHTSCCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCT---------------------------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCH---------------------------
T ss_conf 77899999999985751589724999998458887761412678998345674---------------------------
Q ss_pred HHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECC
Q ss_conf 89999975175333468864467788886433200100174223356665579999998601110223575267875315
Q gi|254780146|r 99 EDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGK 178 (232)
Q Consensus 99 ~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i~~~IG~ 178 (232)
+++||+|+.|++|++||+
T Consensus 56 --------------------------------------------------------------~V~fr~dk~g~ihv~VGk 73 (119)
T 2zkr_5 56 --------------------------------------------------------------TVQLRSGERRTFHTRVGA 73 (119)
T ss_dssp --------------------------------------------------------------EEECCCSSSSEEEEEEEE
T ss_pred --------------------------------------------------------------HEEEECCCCEEEEECCCC
T ss_conf --------------------------------------------------------------012220330023101344
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 77898999999999999998608662544337799999238972774
Q gi|254780146|r 179 VSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKV 225 (232)
Q Consensus 179 ~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~i 225 (232)
++|++|||.||+.+++++|.+.+|.+.+| |+++|||||||||++|
T Consensus 74 ~sf~~e~i~eNi~a~l~~i~~~~p~~~k~--Iksi~lksTMGp~i~i 118 (119)
T 2zkr_5 74 EDMSAENIADNIDVILRRLHADLEKGPLN--IDTVYVKTTMGPAMEV 118 (119)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCTTT--EEEEEEEESSSCCEEC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCC--EEEEEEECCCCCCEEC
T ss_conf 56799999999999998612001158643--5589998999988768
No 8
>>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} (A:1-58,A:153-217)
Probab=99.96 E-value=1.3e-29 Score=203.82 Aligned_cols=119 Identities=19% Similarity=0.357 Sum_probs=103.9
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEE-CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCC
Q ss_conf 3847688989999999860878998629999995-378764544301379952778865406999750445768741200
Q gi|254780146|r 16 IDRSALYGLSDAVVMLKERATARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGAD 94 (232)
Q Consensus 16 ~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L-~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~ 94 (232)
+|++.+|...+++...++.+.++|+||||++++| |+|++|++|+|||+|.||||+|
T Consensus 3 vd~~~l~~av~~~~~~~~~k~~kF~esVel~i~Lk~iD~~k~dq~vrg~v~LP~g~g----------------------- 59 (123)
T 1mzp_A 3 ADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDXKKGDLKLREIVPLPKQPR----------------------- 59 (123)
T ss_dssp CCHHHHHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGGGTTTCCEEEEECSSCCT-----------------------
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCC-----------------------
T ss_conf 778899999999985042557688606999996058789877655678897889993-----------------------
Q ss_pred CCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 00278999997517533346886446778888643320010017422335666557999999860111022357526787
Q gi|254780146|r 95 IVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHA 174 (232)
Q Consensus 95 ~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i~~ 174 (232)
+++||+|+.|++|+
T Consensus 60 ------------------------------------------------------------------~v~fR~dk~g~ih~ 73 (123)
T 1mzp_A 60 ------------------------------------------------------------------SVLVKTKDQPQVQV 73 (123)
T ss_dssp ------------------------------------------------------------------EEEEECSSSSEEEE
T ss_pred ------------------------------------------------------------------EEEEEECCCCEEEE
T ss_conf ------------------------------------------------------------------37999658867999
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 5315778989999999999999986086625443377999992389727740
Q gi|254780146|r 175 GIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVD 226 (232)
Q Consensus 175 ~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id 226 (232)
+||+++|+++||.||+.+++++|.+.+| +|.||+++|||||||||++||
T Consensus 74 ~VGk~sf~~e~l~eNi~a~l~~i~~~kp---~g~~Iksv~iksTMGp~v~vd 122 (123)
T 1mzp_A 74 FIGTEDXKPEDLAENAIAVLNAIENKAK---VETNLRNIYVKTTXGKAVKVK 122 (123)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHCC---CTTTEEEEEEEETTSCCEECC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCCCCEECC
T ss_conf 8716768989999999999999875446---688666899989999897757
No 9
>>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} (A:1-54,A:149-219)
Probab=99.96 E-value=4.5e-28 Score=194.20 Aligned_cols=118 Identities=23% Similarity=0.300 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHCC-CCCCCCCEEEEEEE-CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCHH
Q ss_conf 89899999998608-78998629999995-37876454430137995277886540699975044576874120000278
Q gi|254780146|r 22 YGLSDAVVMLKERA-TARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGE 99 (232)
Q Consensus 22 ysi~eAi~~lk~~~-~~kf~esvel~i~L-~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~ 99 (232)
+++.||++.+++.. .+||+||||++++| |+|++|++|+|||+|.||||+
T Consensus 4 ~~l~eai~~~~~~~~~~kF~esve~~~~Lk~iD~~k~dq~vrg~v~LP~gt----------------------------- 54 (125)
T 1i2a_A 4 EALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGR----------------------------- 54 (125)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCC-----------------------------
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCC-----------------------------
T ss_conf 999999999998566458774399999447778876665257999899998-----------------------------
Q ss_pred HHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCC
Q ss_conf 99999751753334688644677888864332001001742233566655799999986011102235752678753157
Q gi|254780146|r 100 DLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKV 179 (232)
Q Consensus 100 eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i~~~IG~~ 179 (232)
+++||+|+.|++|++||++
T Consensus 55 -------------------------------------------------------------~V~~r~dk~~~ihv~VGk~ 73 (125)
T 1i2a_A 55 -------------------------------------------------------------TVVINTRDKPYFQVLVGNE 73 (125)
T ss_dssp -------------------------------------------------------------EEEEECTTSSEEEEEEEET
T ss_pred -------------------------------------------------------------CEEEEECCCCEEEEEECCC
T ss_conf -------------------------------------------------------------5466523675144543036
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHCC
Q ss_conf 7898999999999999998608662544337799999238972774001005
Q gi|254780146|r 180 SFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS 231 (232)
Q Consensus 180 ~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~~ 231 (232)
+|+++||.||+.+++++|.+.+|.+. .||+++|||||||||++||+++++
T Consensus 74 sf~~e~l~ENi~a~i~~i~~~~p~g~--k~Iksi~iksTMGp~v~V~~~~~~ 123 (125)
T 1i2a_A 74 KMTDEQIVDNIEAVLNVVAKKYEKGL--YHIKDAYVKLTMGPAVKVKKEKAK 123 (125)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHSTTGG--GGEEEEEEEETTSCCEECC-----
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEEEECCCCCCEEEECHHHC
T ss_conf 58989999999999999986286886--248999998999999998653530
No 10
>>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} (A:59-152)
Probab=99.94 E-value=1.9e-27 Score=190.32 Aligned_cols=86 Identities=26% Similarity=0.403 Sum_probs=82.2
Q ss_pred CCCCCEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCC-------CCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCC
Q ss_conf 8654069997504457687412000027899999751753-------33468864467788886-433200100174223
Q gi|254780146|r 71 GVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQI-------DFDRCIATPDMMPLVGR-LGRILGPRGIMPNLR 142 (232)
Q Consensus 71 gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~eli~~i~~~~~-------~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k 142 (232)
|++.+|||||+++.+++|+++||++||++|++++|.++|+ +||+|||||+|||+|++ |||+||||||||||+
T Consensus 1 Gk~~kI~Vf~~~~~~~~Ak~aGad~vg~~eli~~i~~~~~~~kk~~~~fd~~ia~~~~m~~l~k~lG~iLGprGlmP~~k 80 (94)
T 1mzp_A 1 SKAKRVLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESXALAGRILGPALGPRGKFPTPL 80 (94)
T ss_dssp SSCCCEEEECCHHHHHHHHHTCCSEECCHHHHHHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCEEECCCEEEECCCHHHHHHHHCCCEECCCCCCCCCC
T ss_conf 99608999828336999987398630619899875324322211110267599828503333221253111256889750
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 3566655799999986
Q gi|254780146|r 143 VGTVTTDVATAVRESK 158 (232)
Q Consensus 143 ~GTv~~di~~~i~~~k 158 (232)
.|| .|+.++|+++|
T Consensus 81 ~gt--~di~~~v~~~K 94 (94)
T 1mzp_A 81 PNT--ADISEYINRFK 94 (94)
T ss_dssp CSS--SCCHHHHHHHH
T ss_pred CCC--CCHHHHHHHHH
T ss_conf 366--63799999760
No 11
>>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} (A:55-148)
Probab=99.94 E-value=1.6e-27 Score=190.74 Aligned_cols=87 Identities=34% Similarity=0.571 Sum_probs=81.1
Q ss_pred CCCCCEEEEECHHHHHHHHHCCCCCCCHHHHHHH------HHCCCCCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCC
Q ss_conf 8654069997504457687412000027899999------75175333468864467788886-4332001001742233
Q gi|254780146|r 71 GVNVRVAVFATSSKADEAREAGADIVGGEDLFEI------VKGGQIDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRV 143 (232)
Q Consensus 71 gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~eli~~------i~~~~~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~ 143 (232)
|++.||||||+++.+++|+++||++||++||++. ++++|.+||+|||||++||+|++ |||+||||||||||++
T Consensus 1 Gk~~kI~Vf~~~~~~~~A~~aga~~vg~eel~~~i~~~k~ikk~~~~fd~~ia~~~~m~~i~k~lg~iLGprGlmP~~kt 80 (94)
T 1i2a_A 1 GKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVP 80 (94)
T ss_dssp SSCCCEEEECCHHHHHHHHHTTCEEECHHHHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEEC
T ss_pred CCCEEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 98508999927766588987388624815688875116677644045667997222788899987178886289887676
Q ss_pred CCCCCCHHHHHHHHHC
Q ss_conf 5666557999999860
Q gi|254780146|r 144 GTVTTDVATAVRESKS 159 (232)
Q Consensus 144 GTv~~di~~~i~~~k~ 159 (232)
+| +|+.++|+++++
T Consensus 81 ~t--~di~~~I~~~ks 94 (94)
T 1i2a_A 81 AN--ANIKPLVERLKK 94 (94)
T ss_dssp TT--CCCHHHHHHHHT
T ss_pred CC--CHHHHHHHHHHC
T ss_conf 64--126788888740
No 12
>>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (5:55-147)
Probab=99.94 E-value=3e-27 Score=189.09 Aligned_cols=86 Identities=35% Similarity=0.499 Sum_probs=81.0
Q ss_pred CCCCCEEEEECHHHHHHHHHCCCCCCCHHHHHHH------HHCCCCCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCC
Q ss_conf 8654069997504457687412000027899999------75175333468864467788886-4332001001742233
Q gi|254780146|r 71 GVNVRVAVFATSSKADEAREAGADIVGGEDLFEI------VKGGQIDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRV 143 (232)
Q Consensus 71 gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~eli~~------i~~~~~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~ 143 (232)
||+.+|||||+++++++|+++||+++|++||++. ++++|++||+|||||++||+|++ |||+||||||||||++
T Consensus 1 Gk~~kI~Vf~~~~~~~~Ak~aGa~~vg~eeL~~~~k~kk~ikk~~~~~d~~iA~~~~m~~l~k~lg~iLGprg~mP~~k~ 80 (93)
T 2zkr_5 1 GQETTIVVFAEGETALRAEEVADDVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLD 80 (93)
T ss_dssp SSCCCEEEECCHHHHHHHHHHTSCCCCHHHHHHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECC
T ss_pred CCCCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCEEHHHCCCCCCCC
T ss_conf 77612899726677888763043002499999865145565540345775884377876654421761000002345566
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 566655799999986
Q gi|254780146|r 144 GTVTTDVATAVRESK 158 (232)
Q Consensus 144 GTv~~di~~~i~~~k 158 (232)
|| .|+.++|+++|
T Consensus 81 gt--~di~~~I~~~K 93 (93)
T 2zkr_5 81 PD--DDVVEVIERMK 93 (93)
T ss_dssp SS--SCCHHHHHHHH
T ss_pred CC--CHHHHHHHHHH
T ss_conf 65--30889999875
No 13
>>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A (A:18-137)
Probab=99.93 E-value=4.3e-28 Score=194.30 Aligned_cols=118 Identities=30% Similarity=0.464 Sum_probs=102.8
Q ss_pred HHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCH
Q ss_conf 97517533346886446778888643320010017422335666557999999860111022357526787531577898
Q gi|254780146|r 104 IVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFEN 183 (232)
Q Consensus 104 ~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i~~~IG~~~m~~ 183 (232)
+++++|++||+|||++++|+.|+++ ++|++||++|.||+..+..+. ++ |+++||.++.++++++||+++|++
T Consensus 3 k~~~~~~~fD~fla~~~i~~~l~~l----lgk~l~p~~K~p~~~~~~~~~---~~-~~~~~~~~k~~~i~v~IG~~~m~~ 74 (120)
T 2ov7_A 3 YTIDEAAHLVKELATAKFDETVEVH----AKLGIDPRRSDQNVRGTVSLP---HG-GRIEFRNDKTGAIHAPVGKASFPP 74 (120)
T ss_dssp BCHHHHHHHHHHTCCSSSCCEEEEE----EEESSCTTCSSCCCEEEEECT---TS-CEEEEECCTTSEEEEEEEETTSCH
T ss_pred CCHHHHHHHHHHHCCCCCCCCEEEE----EEECCCCCCCCHHHHHHHHHH---HH-CCCCCCCCCCCCEEEEEECCCCCH
T ss_conf 7999999999982546776505677----771548565405599999999---86-385105678870454450334898
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHH
Q ss_conf 9999999999999986086625443377999992389727740010
Q gi|254780146|r 184 KKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSS 229 (232)
Q Consensus 184 e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~ 229 (232)
|||.||+.+++++|.+++|.+.+|.||+++||+|||||++.||+++
T Consensus 75 e~l~eNi~a~i~~i~~~~p~~~~~~~I~~v~lkst~g~~l~I~~~s 120 (120)
T 2ov7_A 75 EKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS 120 (120)
T ss_dssp HHHHHHHHHHHHHHHTTSCSSCCSCSEEEEEEEETTSCCEEBCTTC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEECCCC
T ss_conf 9999999999999998398645677797899989889988709999
No 14
>>2noq_G 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_A (G:57-149)
Probab=99.93 E-value=1.4e-26 Score=184.84 Aligned_cols=86 Identities=23% Similarity=0.376 Sum_probs=79.5
Q ss_pred CCCCCEEEEECHHHHHHHHHCCCCCCCHHHHHHH------HHCCCCCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCC
Q ss_conf 8654069997504457687412000027899999------75175333468864467788886-4332001001742233
Q gi|254780146|r 71 GVNVRVAVFATSSKADEAREAGADIVGGEDLFEI------VKGGQIDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRV 143 (232)
Q Consensus 71 gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~eli~~------i~~~~~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~ 143 (232)
.++.+|||||+++++++|+++||+++|++||++. ++++|.+||+|||||++||+|++ |||+||||||||||++
T Consensus 1 rk~~kI~Vf~~~~~~~~A~~aGa~~vg~eeL~~~~k~~k~~kk~~~~~d~~ia~~~~m~~l~k~lg~~LGprgkmP~~k~ 80 (93)
T 2noq_G 1 RPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS 80 (93)
T ss_dssp SCCCCEEEEECTTHHHHHHHHTCEEEETTHHHHHHHCHHHHHHHHHHCSEEEEEGGGGTHHHHHTHHHHHHHTCCCEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 87716999726512677765200224668888886201678877520688996505776777654123203553234666
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 566655799999986
Q gi|254780146|r 144 GTVTTDVATAVRESK 158 (232)
Q Consensus 144 GTv~~di~~~i~~~k 158 (232)
|| .|+.++|+++|
T Consensus 81 gt--~di~~~i~~~k 93 (93)
T 2noq_G 81 HN--DDLYGKVTDVR 93 (93)
T ss_dssp TT--CCCHHHHHHHC
T ss_pred CC--CCHHHHHHHHH
T ss_conf 53--43999999985
No 15
>>2noq_G 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_A (G:1-56,G:150-213)
Probab=99.85 E-value=2.2e-20 Score=146.46 Aligned_cols=111 Identities=23% Similarity=0.346 Sum_probs=96.2
Q ss_pred CHHHHHHHHH-H---CCCCCCCCCEEEEEEEC-CCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCC
Q ss_conf 9899999998-6---08789986299999953-78764544301379952778865406999750445768741200002
Q gi|254780146|r 23 GLSDAVVMLK-E---RATARFDETVEIAMNLG-IDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVG 97 (232)
Q Consensus 23 si~eAi~~lk-~---~~~~kf~esvel~i~L~-id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg 97 (232)
.+.||+..+- . .+.++|.|||||+|.|+ .|| +.|.+|.|+|.|||-.
T Consensus 5 ~l~~~v~~~l~~~~~~k~r~f~etvelqi~lknydp-qkdkrfsgtv~l~~~p--------------------------- 56 (120)
T 2noq_G 5 QVREHVKELLKYSNETKKRNFLETVELQVGLKNYDP-QRDKRFSGSLKLPNCP--------------------------- 56 (120)
T ss_dssp HHHHHHHHHHHHCCSSSSCSSCCEEEEEEEECSCCT-TSTTCCEEEEECTTCC---------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC-CCCCCCCEEEECCCCC---------------------------
T ss_conf 999999999998775464579852999998478888-6565242589789988---------------------------
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEC
Q ss_conf 78999997517533346886446778888643320010017422335666557999999860111022357526787531
Q gi|254780146|r 98 GEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIG 177 (232)
Q Consensus 98 ~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i~~~IG 177 (232)
|+++||+++.+++|++||
T Consensus 57 --------------------------------------------------------------gtVkfr~kK~~~l~v~VG 74 (120)
T 2noq_G 57 --------------------------------------------------------------STIKFQLKKVLCLAVAVG 74 (120)
T ss_dssp --------------------------------------------------------------CEEEEECTTSSEEEEEEE
T ss_pred --------------------------------------------------------------CCEEEECCCCCEEEEEEC
T ss_conf --------------------------------------------------------------566884079867999863
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 577898999999999999998608662544337799999238972774
Q gi|254780146|r 178 KVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKV 225 (232)
Q Consensus 178 ~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~i 225 (232)
+++|++|||.||+.+++++|.+.+|.+. +||+++||+|||||+++|
T Consensus 75 ~~smt~eeL~eNi~a~in~Lvsllpk~~--knIksi~IKSTMGp~vrI 120 (120)
T 2noq_G 75 NVEMEEDVLVNQILMSVNFFVSLLKKNW--QNVGSLVVKSSMGPAFRL 120 (120)
T ss_dssp ESSSCHHHHHHHHHHHHHHHHHHSSSGG--GGEEEEEEEESSSCCEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCC--CCEEEEEEECCCCCCCCC
T ss_conf 6789999999999999999986354567--647689998998977129
No 16
>>3fik_5 50S ribosomal protein L1; ribosome, decoding, tRNA, EF-TU, ternary complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding; 6.70A {Escherichia coli} PDB: 2rdo_9 2gya_2 2gyc_2 (5:72-133)
Probab=99.78 E-value=7.9e-21 Score=149.26 Aligned_cols=62 Identities=52% Similarity=0.913 Sum_probs=60.7
Q ss_pred CCCEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHH
Q ss_conf 54069997504457687412000027899999751753334688644677888864332001
Q gi|254780146|r 73 NVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGP 134 (232)
Q Consensus 73 ~~kV~Vf~~~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGP 134 (232)
++||||||+++.+++|+++||++||++|||++|++||++||+|||||+|||+|++|||+|||
T Consensus 1 ~vkV~Vfa~~~~~~~A~~aGAd~vG~~elie~I~~g~~~fd~~iAtp~~mp~l~klgriLGP 62 (62)
T 3fik_5 1 SVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGP 62 (62)
T ss_dssp SCCCCEECCTTSSSSTTTSCCSCBCSSTTTGGGGGTCCCCSCCEECTTTHHHHSCSCSCCCS
T ss_pred CEEEEEECCHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHCCC
T ss_conf 24789852706588998779978654777788754773114344052034556666542154
No 17
>>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} (B:55-106)
Probab=34.58 E-value=20 Score=16.50 Aligned_cols=14 Identities=21% Similarity=0.043 Sum_probs=10.5
Q ss_pred EEEEEEECCCCCEE
Q ss_conf 79999923897277
Q gi|254780146|r 211 KRVTLSSTMGCGIK 224 (232)
Q Consensus 211 k~v~lssTmGp~i~ 224 (232)
-+++|+||+||--.
T Consensus 33 ~qi~LkS~~GPIdV 46 (52)
T 2aze_B 33 FQISLKSKQGPIDV 46 (52)
T ss_dssp EEEEEECSSSCCEE
T ss_pred EEEEEECCCCCEEE
T ss_conf 79999659998789
No 18
>>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} (A:94-232,A:592-791)
Probab=31.47 E-value=32 Score=15.19 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=14.8
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 445768741200002789999975175333
Q gi|254780146|r 83 SKADEAREAGADIVGGEDLFEIVKGGQIDF 112 (232)
Q Consensus 83 ~~~~~Ak~aGa~~vg~~eli~~i~~~~~~f 112 (232)
+.+++|.++|++.+ +-+.+++++|+++|
T Consensus 216 ~~~~~a~~~g~~~~--~~~~~~l~~g~l~~ 243 (339)
T 1q16_A 216 TIAGEAEKAGMNPV--DYTVKSLKEGSIRF 243 (339)
T ss_dssp SHHHHHHHTTSCHH--HHHHHHHHHTSSCB
T ss_pred HHHHHHHHCCCCHH--HHHHHHHHHCCCCC
T ss_conf 66889987288726--65699886345563
No 19
>>3i1n_I 50S ribosomal protein L11; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_I 3e1b_5 3e1d_5 1vs6_I 3i1p_I 3i1r_I 3i1t_I 3i20_I 3i22_I 2qam_I* 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* ... (I:1-84)
Probab=29.16 E-value=32 Score=15.18 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC---CCCCCCCCCEEEEEEC
Q ss_conf 64332001001742233566655799999986011---1022357526787531
Q gi|254780146|r 127 RLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGA---VDFRSEKAGIIHAGIG 177 (232)
Q Consensus 127 klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~---i~~r~~k~g~i~~~IG 177 (232)
.+|+.|||+|+--. ....++.+.-++++.|. +.+..+.+..+.+.|+
T Consensus 23 PiGp~LG~~GINi~----~Fck~fN~~T~~~~~g~~vpv~I~v~~Dksf~~~i~ 72 (84)
T 3i1n_I 23 PVGPALGQQGVNIM----EFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTK 72 (84)
T ss_dssp TTTTTTCCSSCCTT----GGGTTTHHHHHHHCSCSCCCCBCBCCSSSSCBCCCC
T ss_pred CCCHHHCCCCCCHH----HHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEC
T ss_conf 87401123588989----999999998524348975678999945850689986
No 20
>>2vqp_A Matrix protein; viral protein, peripheral membrane protein, RSV, virion, envelope protein; HET: GOL; 1.60A {Human respiratory syncytial virus A2} (A:1-124)
Probab=27.43 E-value=41 Score=14.57 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=32.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHC
Q ss_conf 2678753157789899999999999999860866254433779999923897277400100
Q gi|254780146|r 170 GIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSF 230 (232)
Q Consensus 170 g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~ 230 (232)
-++-+|.=+.+++..-|.+- +. .-.|-..|++|-.||.+++|+++-
T Consensus 33 LTvW~PmFQss~p~~~lld~-------L~--------~vtI~~~~~st~~GP~lkV~~ss~ 78 (124)
T 2vqp_A 33 LTIWVPMFQSSMPADLLIKE-------LA--------NVNILVKQISTPKGPSLRVMINSR 78 (124)
T ss_dssp EEEECCCEEECSCHHHHHHH-------HT--------TCEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEEECCCCCCHHHHHH-------HH--------CEEEEEEEECCCCCCEEEEEECCC
T ss_conf 99997801157980789997-------52--------027899982168896589971355
No 21
>>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} (A:241-452)
Probab=27.38 E-value=35 Score=14.99 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=17.9
Q ss_pred CCCCEEEEECHH---HHHHHHHCCCCCCC
Q ss_conf 654069997504---45768741200002
Q gi|254780146|r 72 VNVRVAVFATSS---KADEAREAGADIVG 97 (232)
Q Consensus 72 k~~kV~Vf~~~~---~~~~Ak~aGa~~vg 97 (232)
+...|.++.+.. ..+.|.++|++++-
T Consensus 64 ~~~~v~v~v~~~~~~~~~~~~~~g~d~v~ 92 (212)
T 1pii_A 64 PLQYVGVFRNHDIADVVDKAKVLSLAAVQ 92 (212)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHTCSEEE
T ss_pred CCCEEEEEECCCHHHHHHHHHHCCCCEEE
T ss_conf 98747999379999999999855998689
No 22
>>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NADP-binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* (A:128-283)
Probab=27.20 E-value=42 Score=14.50 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=32.7
Q ss_pred CCCEEEEECHHHHHHHHHCCCCCCC---HHHHHHHHHCCC-CCCCEEEEC---HHHHHH
Q ss_conf 5406999750445768741200002---789999975175-333468864---467788
Q gi|254780146|r 73 NVRVAVFATSSKADEAREAGADIVG---GEDLFEIVKGGQ-IDFDRCIAT---PDMMPL 124 (232)
Q Consensus 73 ~~kV~Vf~~~~~~~~Ak~aGa~~vg---~~eli~~i~~~~-~~fd~~iAt---~~~m~~ 124 (232)
..++.+-++.+..+.+++.|++.+- .++..+.+++.. -.+|++|-+ ++.+..
T Consensus 62 g~~~i~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~gg~d~vid~vg~~~~~~~ 120 (156)
T 3gqv_A 62 GYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTF 120 (156)
T ss_dssp TCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSHHHHHH
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHH
T ss_conf 76301330243112323357532236421146899999705884089985068278787
No 23
>>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} (A:)
Probab=25.90 E-value=17 Score=16.96 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=25.2
Q ss_pred CCCCEEEEECHH---HHHHHHHCCCCCCC--H---HHHHHHHHCCCC
Q ss_conf 654069997504---45768741200002--7---899999751753
Q gi|254780146|r 72 VNVRVAVFATSS---KADEAREAGADIVG--G---EDLFEIVKGGQI 110 (232)
Q Consensus 72 k~~kV~Vf~~~~---~~~~Ak~aGa~~vg--~---~eli~~i~~~~~ 110 (232)
....|.||.+.+ ..+.+.++|++++- + .+++..++.+..
T Consensus 53 ~~~~V~v~v~~~~~~i~~~~~~~~~d~iqlh~~~~~~~~~~l~~~~~ 99 (205)
T 1nsj_A 53 FVFRVGVFVNEEPEKILDVASYVQLNAVQLHGEEPIELCRKIAERIL 99 (205)
T ss_dssp SSEEEEEESSCCHHHHHHHHHHHTCSEEEECSCCCHHHHHHHHTTSE
T ss_pred CCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCC
T ss_conf 75289999556577655565415846886167400999986531454
No 24
>>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli} (A:1-95)
Probab=25.07 E-value=19 Score=16.65 Aligned_cols=53 Identities=6% Similarity=-0.079 Sum_probs=26.3
Q ss_pred CCCCCCEEEEECHHH--HHH----H----HHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHH
Q ss_conf 886540699975044--576----8----7412000027899999751753334688644677
Q gi|254780146|r 70 TGVNVRVAVFATSSK--ADE----A----REAGADIVGGEDLFEIVKGGQIDFDRCIATPDMM 122 (232)
Q Consensus 70 ~gk~~kV~Vf~~~~~--~~~----A----k~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m 122 (232)
.++..||++.|+.-. ... . .+.|.+..-...-+..+.+..-+||++++|+++-
T Consensus 18 ~~~~~~ilvvC~~G~~ts~ll~~kl~~~~~~~~~~~~i~~~~~~~~~~~~~~~DlIisT~~l~ 80 (95)
T 1tvm_A 18 QGSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVD 80 (95)
T ss_dssp SCSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTTSTTSCSEEEESSCCC
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHCCCCCCEEEEECCCC
T ss_conf 145228999999968999999999999999849864123411776631236776599950233
No 25
>>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1, methyltransferase domain, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti MAFF303099} (A:1-151,A:194-243)
Probab=24.77 E-value=46 Score=14.22 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=52.7
Q ss_pred CCCCCCEEEEE--CHHHHHHHHHCCCC-CCC---HHHHHHHHHCCC-------------------CCCCEEEECH-----
Q ss_conf 88654069997--50445768741200-002---789999975175-------------------3334688644-----
Q gi|254780146|r 70 TGVNVRVAVFA--TSSKADEAREAGAD-IVG---GEDLFEIVKGGQ-------------------IDFDRCIATP----- 119 (232)
Q Consensus 70 ~gk~~kV~Vf~--~~~~~~~Ak~aGa~-~vg---~~eli~~i~~~~-------------------~~fd~~iAt~----- 119 (232)
..+..+|+-++ .|.......+.|.. ++| ++++++..++.. -.||.++|.-
T Consensus 41 ~~~~~~VLDiGCG~G~~s~~l~~~~~~~v~gvDiS~~~i~~a~~~~~~~~i~~~~~D~~~~~~~~~~fD~V~~~~~L~~l 120 (201)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYV 120 (201)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEC
T ss_conf 87979999979989899999997303221244543222222222222222222222222222222320023554114414
Q ss_pred -HHHHHHHHHHHHHHHHHCC----CCCCCCCCCCCHHHHHH
Q ss_conf -6778888643320010017----42233566655799999
Q gi|254780146|r 120 -DMMPLVGRLGRILGPRGIM----PNLRVGTVTTDVATAVR 155 (232)
Q Consensus 120 -~~m~~i~klgriLGPkglM----Pn~k~GTv~~di~~~i~ 155 (232)
+.-.-+..+.++|.|-|.+ |+|-...|+.-+...|+
T Consensus 121 ~d~~~~L~ei~rvLkPGG~lils~~~p~~~~~~~~~~~~~~ 161 (201)
T 3bkw_A 121 EDVARLFRTVHQALSPGGHFVFSTEHPIYXAVGTTLNALIR 161 (201)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECHHHHCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 79999999999971999779999747874249999999998
No 26
>>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase; 2.35A {Vibrio cholerae} (A:1-196,A:382-396)
Probab=22.32 E-value=52 Score=13.93 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=17.1
Q ss_pred EEEEEECCCCCCCCCEEEEECH
Q ss_conf 1379952778865406999750
Q gi|254780146|r 61 RGVVTMPNGTGVNVRVAVFATS 82 (232)
Q Consensus 61 rg~v~LPh~~gk~~kV~Vf~~~ 82 (232)
.....+|....+..|||+++..
T Consensus 13 ~~~~~~~~~~~~~~kI~~vtGt 34 (211)
T 3dzc_A 13 LGTENLYFQSNAMKKVLIVFGT 34 (211)
T ss_dssp -----------CCEEEEEEECS
T ss_pred CCHHHHHHHHCCCCEEEEEEEH
T ss_conf 8825555776698619999973
No 27
>>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} (A:)
Probab=21.69 E-value=22 Score=16.20 Aligned_cols=17 Identities=41% Similarity=0.880 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 67788886433200100
Q gi|254780146|r 120 DMMPLVGRLGRILGPRG 136 (232)
Q Consensus 120 ~~m~~i~klgriLGPkg 136 (232)
+-.|...-.|++|||+|
T Consensus 16 ~~~p~~NfvG~IlGP~G 32 (131)
T 1k1g_A 16 DEYPEINFVGLLIGPRG 32 (131)
T ss_dssp TTCCSHHHHHHHHCSSS
T ss_pred CCCCCCCEEEEEECCCC
T ss_conf 66899985647887985
No 28
>>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} (A:131-273)
Probab=21.06 E-value=55 Score=13.77 Aligned_cols=76 Identities=20% Similarity=0.098 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHCCCCC--CCCCEEEEEEECCCCCC---CCCCCEEEEEECCCCCCCCCEEEEEC-HHHHHHHHHCC
Q ss_conf 76889899999998608789--98629999995378764---54430137995277886540699975-04457687412
Q gi|254780146|r 19 SALYGLSDAVVMLKERATAR--FDETVEIAMNLGIDPRH---ANQMVRGVVTMPNGTGVNVRVAVFAT-SSKADEAREAG 92 (232)
Q Consensus 19 ~~~ysi~eAi~~lk~~~~~k--f~esvel~i~L~id~~k---~~~~irg~v~LPh~~gk~~kV~Vf~~-~~~~~~Ak~aG 92 (232)
.+.-+..|..+.+....... -++.+|+...++.+.-. .+..++..- ...+...+|.+-|. -+++.+|.++|
T Consensus 10 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~h~~~~~~~~~~~~---~~~~~~~~ig~s~~t~~e~~~a~~~G 86 (143)
T 1x1o_A 10 KTTPGLRALEKYAVRVGGGRNHRYGLFDGILLKENHVRAAGGVGEAVRRAK---ARAPHYLKVEVEVRSLEELEEALEAG 86 (143)
T ss_dssp CCCTTCHHHHHHHHHHHTCBCCCSSSSSCEEECHHHHHHHTSHHHHHHHHH---HHSCTTSCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHCCHHHHHHHHH---HHCCCCCEEEEEECCHHHHHHHHHCC
T ss_conf 435358999999999849756668886122014447877347166678888---75056736999703279999998559
Q ss_pred CCCCC
Q ss_conf 00002
Q gi|254780146|r 93 ADIVG 97 (232)
Q Consensus 93 a~~vg 97 (232)
+||++
T Consensus 87 aD~i~ 91 (143)
T 1x1o_A 87 ADLIL 91 (143)
T ss_dssp CSEEE
T ss_pred CCEEE
T ss_conf 98784
No 29
>>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} (A:)
Probab=20.79 E-value=56 Score=13.73 Aligned_cols=51 Identities=16% Similarity=0.046 Sum_probs=33.7
Q ss_pred EEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCH--HHHHHHHHCCCCCC
Q ss_conf 3799527788654069997504457687412000027--89999975175333
Q gi|254780146|r 62 GVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGG--EDLFEIVKGGQIDF 112 (232)
Q Consensus 62 g~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~--~eli~~i~~~~~~f 112 (232)
-.-..|||.-.+..+-|=+++....+|...++.-+.. +++.+.+.+.+-.|
T Consensus 51 AgY~ipHPl~~~~~lrIqT~~~~p~~al~~A~~~l~~~~~~l~~~f~~~~~~~ 103 (115)
T 1xpp_A 51 ARYYIKHPVIDNPQIYVRVKSGKPQSAIKRAVRKLSKLYEDLGTQFQKEFQRY 103 (115)
T ss_dssp EEEECSSTTTSCCEEEEEESSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98746897768718999818999799999999999999999999999999999
No 30
>>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} (A:172-314)
Probab=20.36 E-value=36 Score=14.86 Aligned_cols=64 Identities=22% Similarity=0.201 Sum_probs=29.4
Q ss_pred CEEEEE-CHHHHHHHHHCCCCCCCH--HHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 069997-504457687412000027--899999751753334688644677888864332001001742
Q gi|254780146|r 75 RVAVFA-TSSKADEAREAGADIVGG--EDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPN 140 (232)
Q Consensus 75 kV~Vf~-~~~~~~~Ak~aGa~~vg~--~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn 140 (232)
++.+.+ ..+..+.+++.|++.+-. ++.......+ .+|.++-....-..+...-+.|.|.|.+-.
T Consensus 49 ~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~l~~~G~i~~ 115 (143)
T 1uuf_A 49 HVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLK--SFDFILNTVAAPHNLDDFTTLLKRDGTMTL 115 (143)
T ss_dssp EEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTT--CEEEEEECCSSCCCHHHHHTTEEEEEEEEE
T ss_pred CCEEECCCCHHHHHHHHCCCCEEECCCCCHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 4054214323899998709840334520157887336--860999803575115668887207967988
No 31
>>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} (A:1-76,A:174-347)
Probab=20.25 E-value=40 Score=14.63 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=34.7
Q ss_pred CCCEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHH
Q ss_conf 540699975044576874120000278999997517533346886446
Q gi|254780146|r 73 NVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD 120 (232)
Q Consensus 73 ~~kV~Vf~~~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~ 120 (232)
+.||.||+...-+-+|=.||..+ .++|++++++.-+++.++-=|..
T Consensus 72 dTkViVyAk~~GsvAAPTAGLHF--t~~ll~~l~~kGv~~~~iTLHvG 117 (250)
T 1vky_A 72 VSKVIVYAKEEGSVAAPTAGLHF--TPELIEKLKKKGVQFAEVVLHVG 117 (250)
T ss_dssp EEECC------------CGGGGC--CHHHHHHHHHHTCEEEEEEEEC-
T ss_pred CCEEEHHHHHCCCEECCCCCCCC--CHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 99998976425854367688677--89999999984992688999973
Done!