HHsearch results for GI: 254780146 and protein with PDBid: 2noq_G

>2noq_G 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 3jyw_A 1s1i_A
Probab=100.00  E-value=0  Score=347.72  Aligned_cols=198  Identities=23%  Similarity=0.367  Sum_probs=182.9

Q ss_pred             CCHHHHHHHHHHCCCCCCCCCEEEEEEEC-CCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCHHH
Q ss_conf             89899999998608789986299999953-78764544301379952778865406999750445768741200002789
Q gi|254780146|r   22 YGLSDAVVMLKERATARFDETVEIAMNLG-IDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGED  100 (232)
Q Consensus        22 ysi~eAi~~lk~~~~~kf~esvel~i~L~-id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~e  100 (232)
                      +.++||++.+++.+.++|+||||++|+|+ +|+++ ++++||+|.|||+.+++.+|||||+++.+++|+++||+++|++|
T Consensus         8 ~ai~~~l~~~~~~~k~kf~Etvel~v~lk~~d~~k-~~~i~~~i~LPh~~~k~~~v~vf~~~~~~~~ak~~g~~~ig~~~   86 (213)
T 2noq_G            8 EHVKELLKYSNETKKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDD   86 (213)
T ss_dssp             HHHHHHHHHCCSSSSCSSCCEEEEEEEECSCCTTS-TTCCEEEEECTTCCSCCCCEEEEECTTHHHHHHHHTCEEEETTH
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCC-CCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCHHH
T ss_conf             99999999876546468985289999956889865-66043489799988887079998371669998752424447999


Q ss_pred             HHHHHHCCC------CCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf             999975175------333468864467788886-4332001001742233566655799999986011102235752678
Q gi|254780146|r  101 LFEIVKGGQ------IDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIH  173 (232)
Q Consensus       101 li~~i~~~~------~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i~  173 (232)
                      |++.+++.+      .+||+|+|++++|+++++ ||++|||||+||+|+.  +++|+.+.|+++++ ++.||.++.+++|
T Consensus        87 l~~~~k~~~~~rkl~~~~D~fla~~~~~~~l~~~LGk~l~~kgkmP~pv~--~~~~~~~~i~~~~~-~v~~r~~k~~~~~  163 (213)
T 2noq_G           87 LKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS--HNDDLYGKVTDVRS-TIKFQLKKVLCLA  163 (213)
T ss_dssp             HHHHHHCHHHHHHHHHHCSEEEEEGGGGTHHHHHTHHHHHHHTCCCEEEC--TTCCCHHHHHHHCC-EEEEECTTSSEEE
T ss_pred             HHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHHHHHC-CEEEECCCCCEEE
T ss_conf             99987668899877604899987889999887765245223788787868--64559999999867-7389608986799


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf             7531577898999999999999998608662544337799999238972774
Q gi|254780146|r  174 AGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKV  225 (232)
Q Consensus       174 ~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~i  225 (232)
                      ++||+++|+++||.||+.++++.|.+..|.  ++.||+++||||||||+++|
T Consensus       164 v~VG~~~m~~eel~eNi~a~~~~l~~~lp~--~~~~Iksv~lksTmgp~~~~  213 (213)
T 2noq_G          164 VAVGNVEMEEDVLVNQILMSVNFFVSLLKK--NWQNVGSLVVKSSMGPAFRL  213 (213)
T ss_dssp             EEEEESSSCHHHHHHHHHHHHHHHHHHSSS--GGGGEEEEEEEESSSCCEEC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCEEEEEEECCCCCCCCC
T ss_conf             975267899999999999999999873655--66647689998998977039