HHsearch results for GI: 254780146 and protein with PDBid: 2noq_G
>2noq_G 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 3jyw_A 1s1i_A
Probab=100.00 E-value=0 Score=347.72 Aligned_cols=198 Identities=23% Similarity=0.367 Sum_probs=182.9
Q ss_pred CCHHHHHHHHHHCCCCCCCCCEEEEEEEC-CCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCHHH
Q ss_conf 89899999998608789986299999953-78764544301379952778865406999750445768741200002789
Q gi|254780146|r 22 YGLSDAVVMLKERATARFDETVEIAMNLG-IDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGED 100 (232)
Q Consensus 22 ysi~eAi~~lk~~~~~kf~esvel~i~L~-id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~e 100 (232)
+.++||++.+++.+.++|+||||++|+|+ +|+++ ++++||+|.|||+.+++.+|||||+++.+++|+++||+++|++|
T Consensus 8 ~ai~~~l~~~~~~~k~kf~Etvel~v~lk~~d~~k-~~~i~~~i~LPh~~~k~~~v~vf~~~~~~~~ak~~g~~~ig~~~ 86 (213)
T 2noq_G 8 EHVKELLKYSNETKKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDD 86 (213)
T ss_dssp HHHHHHHHHCCSSSSCSSCCEEEEEEEECSCCTTS-TTCCEEEEECTTCCSCCCCEEEEECTTHHHHHHHHTCEEEETTH
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCC-CCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCHHH
T ss_conf 99999999876546468985289999956889865-66043489799988887079998371669998752424447999
Q ss_pred HHHHHHCCC------CCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 999975175------333468864467788886-4332001001742233566655799999986011102235752678
Q gi|254780146|r 101 LFEIVKGGQ------IDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIH 173 (232)
Q Consensus 101 li~~i~~~~------~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i~ 173 (232)
|++.+++.+ .+||+|+|++++|+++++ ||++|||||+||+|+. +++|+.+.|+++++ ++.||.++.+++|
T Consensus 87 l~~~~k~~~~~rkl~~~~D~fla~~~~~~~l~~~LGk~l~~kgkmP~pv~--~~~~~~~~i~~~~~-~v~~r~~k~~~~~ 163 (213)
T 2noq_G 87 LKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS--HNDDLYGKVTDVRS-TIKFQLKKVLCLA 163 (213)
T ss_dssp HHHHHHCHHHHHHHHHHCSEEEEEGGGGTHHHHHTHHHHHHHTCCCEEEC--TTCCCHHHHHHHCC-EEEEECTTSSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHHHHHC-CEEEECCCCCEEE
T ss_conf 99987668899877604899987889999887765245223788787868--64559999999867-7389608986799
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 7531577898999999999999998608662544337799999238972774
Q gi|254780146|r 174 AGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKV 225 (232)
Q Consensus 174 ~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~i 225 (232)
++||+++|+++||.||+.++++.|.+..|. ++.||+++||||||||+++|
T Consensus 164 v~VG~~~m~~eel~eNi~a~~~~l~~~lp~--~~~~Iksv~lksTmgp~~~~ 213 (213)
T 2noq_G 164 VAVGNVEMEEDVLVNQILMSVNFFVSLLKK--NWQNVGSLVVKSSMGPAFRL 213 (213)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHHHHHHSSS--GGGGEEEEEEEESSSCCEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCEEEEEEECCCCCCCCC
T ss_conf 975267899999999999999999873655--66647689998998977039