HHSEARCH alignment of GI: 254780146 and SCOP domain: d1mzpa_

Alignment
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=100.00  E-value=0  Score=406.64  Aligned_cols=198  Identities=24%  Similarity=0.408  Sum_probs=186.9

Q ss_pred             CHHHHHHHHHHC---CCCCCCCCEEEEEEE-CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCH
Q ss_conf             989999999860---878998629999995-3787645443013799527788654069997504457687412000027
Q gi|254780146|r   23 GLSDAVVMLKER---ATARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGG   98 (232)
Q Consensus        23 si~eAi~~lk~~---~~~kf~esvel~i~L-~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~   98 (232)
                      ++.||++.+++.   +++||+||||++|+| ++|++|++++|||+|.|||++|++.||||||+++.+++|+++||++||+
T Consensus         7 ~~~eai~~~~~~~~~~krkF~esvdl~v~Lk~iD~kk~d~~irg~v~LP~~~~k~~kI~Vfa~~e~~~~Ak~aGa~~Vg~   86 (217)
T d1mzpa_           7 SLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASPKVVIT   86 (217)
T ss_dssp             HHHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGGGTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCCSEECC
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHCCCCCCCH
T ss_conf             99999999986242556688625999998258788777641367997899888774499985740067886413320011


Q ss_pred             HHHHHHHHCCCC-------CCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             899999751753-------33468864467788886-4332001001742233566655799999986011102235752
Q gi|254780146|r   99 EDLFEIVKGGQI-------DFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAG  170 (232)
Q Consensus        99 ~eli~~i~~~~~-------~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g  170 (232)
                      +|++++|.++|.       +||+|+|+|++|+.+++ |||+||||||||||+.||  .|+.++|+++++| ++||.++.|
T Consensus        87 ~dli~ki~~~~~~~~kl~~~~d~fla~~~~m~~~~~~lGkiLGprgkMP~pk~gt--~di~~~v~~~k~~-v~~r~~k~~  163 (217)
T d1mzpa_          87 REELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNT--ADISEYINRFKRS-VLVKTKDQP  163 (217)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCSS--SCCHHHHHHHHTE-EEEECSSSS
T ss_pred             HHHHHHHHCCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHC-CEEECCCCE
T ss_conf             8888876335422220100267499807514667777634420022446655444--4489999999702-102025634


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf             67875315778989999999999999986086625443377999992389727740
Q gi|254780146|r  171 IIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVD  226 (232)
Q Consensus       171 ~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id  226 (232)
                      ++|++||+++|++|||.||+.+++++|.+..|   ++.||+++|||||||||++||
T Consensus       164 ~i~~~IG~~~m~~e~L~eNi~a~i~~i~~~~~---~~~~Ik~v~iksTmGp~i~i~  216 (217)
T d1mzpa_         164 QVQVFIGTEDMKPEDLAENAIAVLNAIENKAK---VETNLRNIYVKTTMGKAVKVK  216 (217)
T ss_dssp             EEEEEEEETTSCHHHHHHHHHHHHHHHHHHCC---CTTTEEEEEEEETTSCCEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCCCCEECC
T ss_conf             79874045678999999999999999875346---687677899989999897668


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]