Query gi|254780146|ref|YP_003064559.1| 50S ribosomal protein L1 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 232
No_of_seqs 118 out of 1923
Neff 6.3
Searched_HMMs 13730
Date Sun May 22 15:24:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780146.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ad2a_ e.24.1.1 (A:) Ribosoma 100.0 0 0 484.3 21.7 223 7-229 1-224 (224)
2 d1mzpa_ e.24.1.1 (A:) Ribosoma 100.0 0 0 406.6 21.0 198 23-226 7-216 (217)
3 d1i2aa_ e.24.1.1 (A:) Ribosoma 100.0 0 0 396.3 21.0 200 22-226 4-212 (212)
4 d1v5xa_ c.1.2.4 (A:) N-(5'phos 63.2 0.69 5E-05 23.1 -0.1 23 74-96 54-79 (200)
5 d1piia1 c.1.2.4 (A:255-452) N- 61.2 0.91 6.6E-05 22.4 0.3 22 75-96 53-77 (198)
6 d1nsja_ c.1.2.4 (A:) N-(5'phos 60.1 0.84 6.1E-05 22.6 -0.1 20 139-158 153-173 (205)
7 d1qora2 c.2.1.1 (A:113-291) Qu 41.0 8.4 0.00061 16.4 2.5 114 74-198 54-176 (179)
8 d1pqwa_ c.2.1.1 (A:) Putative 39.7 10 0.00074 15.9 2.8 114 74-199 51-174 (183)
9 d1uufa2 c.2.1.1 (A:145-312) Hy 34.2 5.9 0.00043 17.4 0.9 65 75-139 56-121 (168)
10 d1llua2 c.2.1.1 (A:144-309) Al 30.6 15 0.0011 14.9 2.5 102 26-139 15-121 (166)
11 d1k1ga_ d.51.1.1 (A:) RNA spli 28.0 5.8 0.00042 17.4 -0.0 17 120-136 12-28 (122)
12 d2azeb1 e.63.1.2 (B:201-301) T 27.5 13 0.00091 15.3 1.6 13 211-223 82-94 (101)
13 d2bl5a1 d.51.1.1 (A:1-134) Qua 26.3 8.3 0.00061 16.4 0.5 15 122-136 13-27 (134)
14 d1kzyc2 c.15.1.4 (C:1867-1972) 23.5 11 0.00082 15.6 0.8 65 68-133 1-72 (106)
15 d1jvba2 c.2.1.1 (A:144-313) Al 21.9 21 0.0016 13.9 2.5 65 75-139 55-125 (170)
16 d1yb5a2 c.2.1.1 (A:121-294) Qu 21.9 21 0.0016 13.9 3.6 66 74-140 54-125 (174)
17 d1iz0a2 c.2.1.1 (A:99-269) Qui 20.9 21 0.0015 13.9 1.7 62 75-139 54-117 (171)
No 1
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=484.29 Aligned_cols=223 Identities=45% Similarity=0.796 Sum_probs=218.9
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHH
Q ss_conf 43798985138476889899999998608789986299999953787645443013799527788654069997504457
Q gi|254780146|r 7 KRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKAD 86 (232)
Q Consensus 7 Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~ 86 (232)
|||+++.+.+|..+.|+++||+++||+.+.++|+||||++++|++|++|++++|||+|.|||++|++.+|||||+++.++
T Consensus 1 kr~~~~~~~~d~~k~ysi~EAi~~lk~~~~~kF~esvel~i~L~~~~~k~~~~i~g~v~LP~~~~k~~ki~v~~~~e~~~ 80 (224)
T d1ad2a_ 1 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIK 80 (224)
T ss_dssp CCCTTTTTSCCTTCCBCHHHHHHHHHTTCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHH
T ss_pred CCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEECCHHHHH
T ss_conf 94677765067667769999999999718899995299999974566655554312677414666640378854637799
Q ss_pred HHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 6874120000278999997517533346886446778888-643320010017422335666557999999860111022
Q gi|254780146|r 87 EAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVG-RLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFR 165 (232)
Q Consensus 87 ~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~-klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r 165 (232)
+|+++||++||++|++++|+++|++||+|||||+||++++ +|||+||||||||||+.||+++|+.++|+++++|+++||
T Consensus 81 ~Ak~aGa~~vg~~eli~ki~~~~~~fd~~ia~~~~m~~v~~~lgriLGprGlMP~pk~Gtv~~di~~~v~~~k~g~v~~r 160 (224)
T d1ad2a_ 81 EAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFR 160 (224)
T ss_dssp HHHHTTCSEEECGGGHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCSCCTTTTCBCSCHHHHHHHHHTTEEEEE
T ss_pred HHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
T ss_conf 98766762007377888875577530068868999999998640204765679987778866449999999868848986
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHH
Q ss_conf 3575267875315778989999999999999986086625443377999992389727740010
Q gi|254780146|r 166 SEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSS 229 (232)
Q Consensus 166 ~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~ 229 (232)
+++.|++|++||+++|+++||.||+.+++++|.+++|.+.+|.||+++|||||||||++||.+|
T Consensus 161 ~~k~g~i~~~IG~~~m~~e~i~eNi~~~i~~i~~~~p~~~k~~~ik~v~l~sTmGp~~~id~~s 224 (224)
T d1ad2a_ 161 NDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS 224 (224)
T ss_dssp CCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEEEECTTSCCEEECTTC
T ss_pred ECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEECCCC
T ss_conf 4787545102210248989999999999999998495645787486999989999897839999
No 2
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=100.00 E-value=0 Score=406.64 Aligned_cols=198 Identities=24% Similarity=0.408 Sum_probs=186.9
Q ss_pred CHHHHHHHHHHC---CCCCCCCCEEEEEEE-CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCH
Q ss_conf 989999999860---878998629999995-3787645443013799527788654069997504457687412000027
Q gi|254780146|r 23 GLSDAVVMLKER---ATARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGG 98 (232)
Q Consensus 23 si~eAi~~lk~~---~~~kf~esvel~i~L-~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~ 98 (232)
++.||++.+++. +++||+||||++|+| ++|++|++++|||+|.|||++|++.||||||+++.+++|+++||++||+
T Consensus 7 ~~~eai~~~~~~~~~~krkF~esvdl~v~Lk~iD~kk~d~~irg~v~LP~~~~k~~kI~Vfa~~e~~~~Ak~aGa~~Vg~ 86 (217)
T d1mzpa_ 7 SLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASPKVVIT 86 (217)
T ss_dssp HHHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGGGTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCCSEECC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHCCCCCCCH
T ss_conf 99999999986242556688625999998258788777641367997899888774499985740067886413320011
Q ss_pred HHHHHHHHCCCC-------CCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 899999751753-------33468864467788886-4332001001742233566655799999986011102235752
Q gi|254780146|r 99 EDLFEIVKGGQI-------DFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAG 170 (232)
Q Consensus 99 ~eli~~i~~~~~-------~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g 170 (232)
+|++++|.++|. +||+|+|+|++|+.+++ |||+||||||||||+.|| .|+.++|+++++| ++||.++.|
T Consensus 87 ~dli~ki~~~~~~~~kl~~~~d~fla~~~~m~~~~~~lGkiLGprgkMP~pk~gt--~di~~~v~~~k~~-v~~r~~k~~ 163 (217)
T d1mzpa_ 87 REELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNT--ADISEYINRFKRS-VLVKTKDQP 163 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCSS--SCCHHHHHHHHTE-EEEECSSSS
T ss_pred HHHHHHHHCCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHC-CEEECCCCE
T ss_conf 8888876335422220100267499807514667777634420022446655444--4489999999702-102025634
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 67875315778989999999999999986086625443377999992389727740
Q gi|254780146|r 171 IIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVD 226 (232)
Q Consensus 171 ~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id 226 (232)
++|++||+++|++|||.||+.+++++|.+..| ++.||+++|||||||||++||
T Consensus 164 ~i~~~IG~~~m~~e~L~eNi~a~i~~i~~~~~---~~~~Ik~v~iksTmGp~i~i~ 216 (217)
T d1mzpa_ 164 QVQVFIGTEDMKPEDLAENAIAVLNAIENKAK---VETNLRNIYVKTTMGKAVKVK 216 (217)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHHHCC---CTTTEEEEEEEETTSCCEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCCCCEECC
T ss_conf 79874045678999999999999999875346---687677899989999897668
No 3
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=0 Score=396.34 Aligned_cols=200 Identities=29% Similarity=0.421 Sum_probs=185.7
Q ss_pred CCHHHHHHHHHHCCC-CCCCCCEEEEEEE-CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCHH
Q ss_conf 898999999986087-8998629999995-37876454430137995277886540699975044576874120000278
Q gi|254780146|r 22 YGLSDAVVMLKERAT-ARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGE 99 (232)
Q Consensus 22 ysi~eAi~~lk~~~~-~kf~esvel~i~L-~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~ 99 (232)
.++.||++.+++.++ +||+||||++++| ++|++|++++|||+|.||||+|++.+|||||+++.+++|+++||+++|++
T Consensus 4 ~~~~~ai~~~~~~~k~rkF~esvel~i~Lk~iD~kk~d~~irg~v~LPh~~gk~~kV~Vf~~~e~~~~Ak~aga~~vg~~ 83 (212)
T d1i2aa_ 4 EALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKE 83 (212)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCEEECHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCH
T ss_conf 99999999999867755887449999962777887665002567627999887631899840666777652000003707
Q ss_pred HHHH------HHHCCCCCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 9999------975175333468864467788886-433200100174223356665579999998601110223575267
Q gi|254780146|r 100 DLFE------IVKGGQIDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGII 172 (232)
Q Consensus 100 eli~------~i~~~~~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i 172 (232)
||++ +++++|.+||+|||||+|||+|++ |||+||||||||||++|| +|+.++|+++++| +.|+.++.|++
T Consensus 84 el~~~~~~~~~~kk~~~~~D~~iat~~~m~~l~k~lgkiLGpkglmP~p~~~t--~di~~~v~~~k~~-~~~~~~~~~~i 160 (212)
T d1i2aa_ 84 EIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPAN--ANIKPLVERLKKT-VVINTRDKPYF 160 (212)
T ss_dssp HHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECTT--CCCHHHHHHHHTE-EEEECTTSSEE
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHHCC-EEEEECCCCEE
T ss_conf 78888743543421144577687523178787887544656410345577642--1046789997445-66430477347
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 875315778989999999999999986086625443377999992389727740
Q gi|254780146|r 173 HAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVD 226 (232)
Q Consensus 173 ~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id 226 (232)
|++||+++|+++||.||+.+++++|.+.+|.+. .||+++|||||||||++|.
T Consensus 161 ~~~IG~~~m~~e~i~eNi~a~~~~i~~~~pkg~--~~Ik~v~lssTmgp~~~i~ 212 (212)
T d1i2aa_ 161 QVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGL--YHIKDAYVKLTMGPAVKVK 212 (212)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHSTTGG--GGEEEEEEEETTSCCEECC
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEEEECCCCCCEECC
T ss_conf 786411248999999999999999986475786--2488999989999888659
No 4
>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}
Probab=63.23 E-value=0.69 Score=23.15 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=12.2
Q ss_pred CCEEEEECHH--H-HHHHHHCCCCCC
Q ss_conf 4069997504--4-576874120000
Q gi|254780146|r 74 VRVAVFATSS--K-ADEAREAGADIV 96 (232)
Q Consensus 74 ~kV~Vf~~~~--~-~~~Ak~aGa~~v 96 (232)
.+|+||.+.+ . .+.+.+++.+++
T Consensus 54 ~~V~Vf~~~~~~~i~~~~~~~~~d~v 79 (200)
T d1v5xa_ 54 VRVGVFRDQPPEEVLRLMEEARLQVA 79 (200)
T ss_dssp EEEEEESSCCHHHHHHHHHHTTCSEE
T ss_pred EEEEEEEECHHHHHHHHHCCCCCCCC
T ss_conf 43320342006666643112444432
No 5
>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]}
Probab=61.22 E-value=0.91 Score=22.39 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=8.6
Q ss_pred CEEEEECHHH---HHHHHHCCCCCC
Q ss_conf 0699975044---576874120000
Q gi|254780146|r 75 RVAVFATSSK---ADEAREAGADIV 96 (232)
Q Consensus 75 kV~Vf~~~~~---~~~Ak~aGa~~v 96 (232)
.|+||.+.+. .+.++..+.+++
T Consensus 53 ~V~Vfv~~~~~~i~~~~~~~~~d~i 77 (198)
T d1piia1 53 YVGVFRNHDIADVVDKAKVLSLAAV 77 (198)
T ss_dssp EEEEESSCCHHHHHHHHHHHTCSEE
T ss_pred CCEEEECCCHHHHHHHHHCCCCCCE
T ss_conf 4035641420357776402466430
No 6
>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]}
Probab=60.15 E-value=0.84 Score=22.59 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=12.3
Q ss_pred CCCCCCCCC-CCHHHHHHHHH
Q ss_conf 422335666-55799999986
Q gi|254780146|r 139 PNLRVGTVT-TDVATAVRESK 158 (232)
Q Consensus 139 Pn~k~GTv~-~di~~~i~~~k 158 (232)
|--..|.++ +|+.++++..+
T Consensus 153 ~~~LAGGl~~~Nv~~ai~~~~ 173 (205)
T d1nsja_ 153 YLVLSGGLNPENVRSAIDVVR 173 (205)
T ss_dssp CEEEESSCCTTTHHHHHHHHC
T ss_pred CEEEECCCCHHHHHHHHHHHC
T ss_conf 334316789899999999758
No 7
>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}
Probab=40.98 E-value=8.4 Score=16.38 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=56.9
Q ss_pred CCEEEEE-CHHHHHHHHHCCCCCC---CHHHHHHHHHCC--CCCCCEEEECHHHHHHHHHHHHHHHHHHCCCC---CCCC
Q ss_conf 4069997-5044576874120000---278999997517--53334688644677888864332001001742---2335
Q gi|254780146|r 74 VRVAVFA-TSSKADEAREAGADIV---GGEDLFEIVKGG--QIDFDRCIATPDMMPLVGRLGRILGPRGIMPN---LRVG 144 (232)
Q Consensus 74 ~kV~Vf~-~~~~~~~Ak~aGa~~v---g~~eli~~i~~~--~~~fd~~iAt~~~m~~i~klgriLGPkglMPn---~k~G 144 (232)
.+|.+.. ..+..+.+++.||+.+ ..+|+.+++++- -..+|+++.... -..+......|.|.|..-. +-..
T Consensus 54 a~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~ 132 (179)
T d1qora2 54 AKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFGNSSGA 132 (179)
T ss_dssp CEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEECCCTTCC
T ss_pred CEEEECCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 84753132037888887039729998999889999999858997099996764-78999999988169736441443477
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 666557999999860111022357526787531577898999999999999998
Q gi|254780146|r 145 TVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVV 198 (232)
Q Consensus 145 Tv~~di~~~i~~~k~g~i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~ 198 (232)
....+...... .+.+-+... .+...-...+++.|.++.+++-+.
T Consensus 133 ~~~~~~~~~~~---~~~~~~~~~-------~l~~~~~~~~~~~~~~~~l~~lv~ 176 (179)
T d1qora2 133 VTGVNLGILNQ---KGSLYVTRP-------SLQGYITTREELTEASNELFSLIA 176 (179)
T ss_dssp CCCBCTHHHHH---TTSCEEECC-------CHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHC---CCEEEEEEE-------EEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 65554023311---441899701-------775310899999999999999998
No 8
>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=39.73 E-value=10 Score=15.87 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=55.2
Q ss_pred CCEEEEEC-HHHHHHHHHCCCCCCC---HHHHHHHHHCC--CCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCC--CCCC
Q ss_conf 40699975-0445768741200002---78999997517--533346886446778888643320010017422--3356
Q gi|254780146|r 74 VRVAVFAT-SSKADEAREAGADIVG---GEDLFEIVKGG--QIDFDRCIATPDMMPLVGRLGRILGPRGIMPNL--RVGT 145 (232)
Q Consensus 74 ~kV~Vf~~-~~~~~~Ak~aGa~~vg---~~eli~~i~~~--~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~--k~GT 145 (232)
.++.+.+. .+..+.+++.|++.+- .+++.+.+++. ...||.++.+..- ..+...-+.|.|.|.+=.. ..+.
T Consensus 51 ~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~G~~~~~ 129 (183)
T d1pqwa_ 51 ARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG-EAIQRGVQILAPGGRFIELGKKDVY 129 (183)
T ss_dssp CEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEEEEEEEEECSCGGGT
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCC-HHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 322011014421000122233212457755799999998389977999953554-6799989976589779998567777
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCEEEE-E-ECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 66557999999860111022357526787-5-315778989999999999999986
Q gi|254780146|r 146 VTTDVATAVRESKSGAVDFRSEKAGIIHA-G-IGKVSFENKKIEENVLAFVSAVVK 199 (232)
Q Consensus 146 v~~di~~~i~~~k~g~i~~r~~k~g~i~~-~-IG~~~m~~e~i~eNi~~~~~~i~~ 199 (232)
.... .....+. +...+.. . .+....+.++..+.+..+++.+..
T Consensus 130 ~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 174 (183)
T d1pqwa_ 130 ADAS---------LGLAALA--KSASFSVVDLDLNLKLQPARYRQLLQHILQHVAD 174 (183)
T ss_dssp TTCE---------EEGGGGT--TTCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred CCCC---------CCHHHHH--CCCEEEEEECCCEECCCHHHHHHHHHHHHHHHHC
T ss_conf 7766---------4367874--7757999975620136999999999999999987
No 9
>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}
Probab=34.21 E-value=5.9 Score=17.37 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=34.1
Q ss_pred CEEEEEC-HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0699975-0445768741200002789999975175333468864467788886433200100174
Q gi|254780146|r 75 RVAVFAT-SSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMP 139 (232)
Q Consensus 75 kV~Vf~~-~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMP 139 (232)
++.++.. .+..+.|++.||+.+-..............||.++-....-..+...-..|.|.|.+=
T Consensus 56 ~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv 121 (168)
T d1uufa2 56 HVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMT 121 (168)
T ss_dssp EEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEE
T ss_pred CCHHHCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCEEE
T ss_conf 100101305599997524994999784156789863788641366652332899999974698899
No 10
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.56 E-value=15 Score=14.86 Aligned_cols=102 Identities=22% Similarity=0.189 Sum_probs=48.2
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEC-HHHHHHHHHCCCCCCC---HHHH
Q ss_conf 99999986087899862999999537876454430137995277886540699975-0445768741200002---7899
Q gi|254780146|r 26 DAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFAT-SSKADEAREAGADIVG---GEDL 101 (232)
Q Consensus 26 eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~-~~~~~~Ak~aGa~~vg---~~el 101 (232)
.|..-++... .++.++|=+ ++..+ -- .-.+.+=+-.| .+|.++.. ++..+.|++.||+.+- .++.
T Consensus 15 Ta~~al~~~~-~~~g~~VlV---~GaG~----vG-~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~ 83 (166)
T d1llua2 15 TVYKGLKQTN-ARPGQWVAI---SGIGG----LG-HVAVQYARAMG--LHVAAIDIDDAKLELARKLGASLTVNARQEDP 83 (166)
T ss_dssp HHHHHHHHHT-CCTTCEEEE---ECCSH----HH-HHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEEEETTTSCH
T ss_pred HHHHHHHHHC-CCCCCEEEE---EECCC----CH-HHHHHHHHHCC--CCCCEECCHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 9999999859-999998999---41560----17-89999998739--86512201046787640358643322221247
Q ss_pred HHHHHCCCCCC-CEEEECHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99975175333-468864467788886433200100174
Q gi|254780146|r 102 FEIVKGGQIDF-DRCIATPDMMPLVGRLGRILGPRGIMP 139 (232)
Q Consensus 102 i~~i~~~~~~f-d~~iAt~~~m~~i~klgriLGPkglMP 139 (232)
.+.+......+ +.++++.. -..+...-+.|.|.|..-
T Consensus 84 ~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~~l~~~G~iv 121 (166)
T d1llua2 84 VEAIQRDIGGAHGVLVTAVS-NSAFGQAIGMARRGGTIA 121 (166)
T ss_dssp HHHHHHHHSSEEEEEECCSC-HHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHCCCCEEE
T ss_conf 88989860587421223332-207999999864995899
No 11
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.95 E-value=5.8 Score=17.38 Aligned_cols=17 Identities=41% Similarity=0.880 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 67788886433200100
Q gi|254780146|r 120 DMMPLVGRLGRILGPRG 136 (232)
Q Consensus 120 ~~m~~i~klgriLGPkg 136 (232)
+-.|...-+|++|||||
T Consensus 12 ~~~P~fNfvG~IlGPrG 28 (122)
T d1k1ga_ 12 DEYPEINFVGLLIGPRG 28 (122)
T ss_dssp TTCCSHHHHHHHHCSSS
T ss_pred CCCCCCCEEEEEECCCC
T ss_conf 66889980015767897
No 12
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.49 E-value=13 Score=15.31 Aligned_cols=13 Identities=23% Similarity=0.089 Sum_probs=10.5
Q ss_pred EEEEEEECCCCCE
Q ss_conf 7999992389727
Q gi|254780146|r 211 KRVTLSSTMGCGI 223 (232)
Q Consensus 211 k~v~lssTmGp~i 223 (232)
-++||+||+||--
T Consensus 82 yqi~lkS~~GpI~ 94 (101)
T d2azeb1 82 FQISLKSKQGPID 94 (101)
T ss_dssp EEEEEECSSSCCE
T ss_pred EEEEEECCCCCEE
T ss_conf 7999965999878
No 13
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=26.33 E-value=8.3 Score=16.42 Aligned_cols=15 Identities=60% Similarity=1.050 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 788886433200100
Q gi|254780146|r 122 MPLVGRLGRILGPRG 136 (232)
Q Consensus 122 m~~i~klgriLGPkg 136 (232)
.|...-.|++|||||
T Consensus 13 ~P~~NfvG~IiGPrG 27 (134)
T d2bl5a1 13 YPDFNFVGRILGPRG 27 (134)
T ss_dssp CSSSCHHHHHTTTTH
T ss_pred CCCCCEEEEEECCCC
T ss_conf 899986578877997
No 14
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.48 E-value=11 Score=15.61 Aligned_cols=65 Identities=18% Similarity=0.095 Sum_probs=37.4
Q ss_pred CCCCCCCCEEEEECHH-----H-HHHHHHCCCCCCCHHHHHHHHHCC-CCCCCEEEECHHHHHHHHHHHHHHH
Q ss_conf 7788654069997504-----4-576874120000278999997517-5333468864467788886433200
Q gi|254780146|r 68 NGTGVNVRVAVFATSS-----K-ADEAREAGADIVGGEDLFEIVKGG-QIDFDRCIATPDMMPLVGRLGRILG 133 (232)
Q Consensus 68 h~~gk~~kV~Vf~~~~-----~-~~~Ak~aGa~~vg~~eli~~i~~~-~~~fd~~iAt~~~m~~i~klgriLG 133 (232)
||| +..||++.++.. . ..-.+-+||..|-.....+..++. -..||+++..+++=+.+-+-+..||
T Consensus 1 npF-~~l~vl~vs~~~~~F~e~Ws~IL~~~Ga~vV~~~~~~~~~sd~~~~~~DVvvTD~scp~~vl~~a~~~~ 72 (106)
T d1kzyc2 1 NPF-QNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQ 72 (106)
T ss_dssp CTT-TTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHT
T ss_pred CCC-CCEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 987-662899980664018999999999679468640346502224764436589967989899999988719
No 15
>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=21.94 E-value=21 Score=13.88 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=36.2
Q ss_pred CEEEEEC-HHHHHHHHHCCCCCCC---HHHHHHHHHCCC--CCCCEEEECHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0699975-0445768741200002---789999975175--333468864467788886433200100174
Q gi|254780146|r 75 RVAVFAT-SSKADEAREAGADIVG---GEDLFEIVKGGQ--IDFDRCIATPDMMPLVGRLGRILGPRGIMP 139 (232)
Q Consensus 75 kV~Vf~~-~~~~~~Ak~aGa~~vg---~~eli~~i~~~~--~~fd~~iAt~~~m~~i~klgriLGPkglMP 139 (232)
+|.+... .+..+.|++.||+.+- .+|..+++.+.. -.||.++.....-..+...-+.+.|.|.+-
T Consensus 55 ~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv 125 (170)
T d1jvba2 55 TIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYV 125 (170)
T ss_dssp EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHCCCCCEEE
T ss_conf 22222220255799998299502235775889999997641431233101222057776664034697999
No 16
>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.90 E-value=21 Score=13.87 Aligned_cols=66 Identities=14% Similarity=0.021 Sum_probs=40.9
Q ss_pred CCEEEEEC-HHHHHHHHHCCCCCCC---HHHHHHHHHCC--CCCCCEEEECHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 40699975-0445768741200002---78999997517--53334688644677888864332001001742
Q gi|254780146|r 74 VRVAVFAT-SSKADEAREAGADIVG---GEDLFEIVKGG--QIDFDRCIATPDMMPLVGRLGRILGPRGIMPN 140 (232)
Q Consensus 74 ~kV~Vf~~-~~~~~~Ak~aGa~~vg---~~eli~~i~~~--~~~fd~~iAt~~~m~~i~klgriLGPkglMPn 140 (232)
.+|.+.+. .+..+.|++.||+.+- .+++.++++.. ...||.++.+..- +.+...-+.|.|.|.+=.
T Consensus 54 ~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 54 LKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN-VNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp CEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHH-HHHHHHHHHEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCH-HHHHHHHHCCCCCCEEEE
T ss_conf 610024322111222012686332233343478775543225773588612547-789998752389988999
No 17
>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}
Probab=20.93 E-value=21 Score=13.95 Aligned_cols=62 Identities=19% Similarity=0.103 Sum_probs=35.2
Q ss_pred CEEEEEC-HHHHHHHHHCCCCCC-CHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0699975-044576874120000-2789999975175333468864467788886433200100174
Q gi|254780146|r 75 RVAVFAT-SSKADEAREAGADIV-GGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMP 139 (232)
Q Consensus 75 kV~Vf~~-~~~~~~Ak~aGa~~v-g~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMP 139 (232)
+|.+.+. .+..+.+++.||+.+ ...|..+.+..+. .+|.++-... +.+...=+.|.|.|.+=
T Consensus 54 ~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~-g~D~v~d~~G--~~~~~~~~~l~~~G~~v 117 (171)
T d1iz0a2 54 RVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWG-GLDLVLEVRG--KEVEESLGLLAHGGRLV 117 (171)
T ss_dssp EEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTT-SEEEEEECSC--TTHHHHHTTEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCC-CCCCCCCCCC--HHHHHHHHHHHCCCCEE
T ss_conf 3322335541111112344402222023555542135-5320114565--06999999876599699
Done!