PSIBLAST alignment of GI: 254780146 and protein with PDB id: 1eg0
gi|7245459|pdb|1EG0|N Chain N, Fitting Of Components With Known Structure Into An 11.5 A Cryo-Em Map Of The E.Coli 70s Ribosome Length = 229
>gi|119389735|pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 229
Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats.
Identities = 101/229 (44%), Positives = 155/229 (67%), Gaps = 1/229 (0%)
Query: 2 VSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVR 61
+ K KR + + + +D + +Y + +A ++KE ATA+FDETVE+ LGIDPR ++Q VR
Sbjct: 1 MPKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVR 60
Query: 62 GVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDM 121
G V++P+G G VRV A K EA EAGAD VGGE++ + + G +DFD +ATPD+
Sbjct: 61 GTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDV 120
Query: 122 MPLV-GRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS 180
M V +LGRILGPRG++PN + GTV ++ +RE K+G ++FR++K G IHA +GK S
Sbjct: 121 MGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKAS 180
Query: 181 FENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSS 229
F +K+ +N+ AF+ A+ KP AKG +++ V +++TMG ++++ S
Sbjct: 181 FPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS 229