BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780146|ref|YP_003064559.1| 50S ribosomal protein L1
[Candidatus Liberibacter asiaticus str. psy62]
         (232 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780146|ref|YP_003064559.1| 50S ribosomal protein L1 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 232

 Score =  466 bits (1198), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/232 (100%), Positives = 232/232 (100%)

Query: 1   MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMV 60
           MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMV
Sbjct: 1   MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMV 60

Query: 61  RGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD 120
           RGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD
Sbjct: 61  RGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD 120

Query: 121 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS 180
           MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS
Sbjct: 121 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS 180

Query: 181 FENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFSV 232
           FENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFSV
Sbjct: 181 FENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFSV 232


>537021.9.peg.33_1 
          Length = 100

 Score = 25.4 bits (54), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 17/84 (20%)

Query: 105 VKGGQIDFDR-------CIATPDMMPLVGRLGRILGPRGI-MPNLRVGTVTTDVATAVRE 156
           +K  +I+FD        CI   D++ +V  +G ILG  GI + +  +G           +
Sbjct: 10  IKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGR---------SQ 60

Query: 157 SKSGAVDFRSEKAGIIHAGIGKVS 180
           S   A+ F      I+++ + K+S
Sbjct: 61  STEHAISFLCIDGSILNSVLEKLS 84


>gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 673

 Score = 23.9 bits (50), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)

Query: 136 GIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS 180
           GI PNL+  ++ T   TA+RE          +   I H+ + K+S
Sbjct: 127 GIDPNLQSESLPTIPGTAIRE---------DDDIDIFHSDMAKLS 162


>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 199

 Score = 23.9 bits (50), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 184 KKIEENVLAFVSAVVKAKPSVAKGDYV 210
           K  EEN L  +S  +  K  +++ DYV
Sbjct: 144 KHTEENFLFILSKQMNEKDKISRADYV 170


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 22.3 bits (46), Expect = 7.2,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 18/24 (75%)

Query: 2   VSKISKRMQQISQGIDRSALYGLS 25
           + K+S +M++ ++ I+ S +YG+S
Sbjct: 790 IEKVSPQMRRHAKTINFSIIYGIS 813


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.134    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,772
Number of Sequences: 1233
Number of extensions: 5058
Number of successful extensions: 19
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 11
length of query: 232
length of database: 328,796
effective HSP length: 71
effective length of query: 161
effective length of database: 241,253
effective search space: 38841733
effective search space used: 38841733
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 37 (18.9 bits)