BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780146|ref|YP_003064559.1| 50S ribosomal protein L1 [Candidatus Liberibacter asiaticus str. psy62] (232 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780146|ref|YP_003064559.1| 50S ribosomal protein L1 [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 466 bits (1198), Expect = e-133, Method: Compositional matrix adjust. Identities = 232/232 (100%), Positives = 232/232 (100%) Query: 1 MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMV 60 MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMV Sbjct: 1 MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMV 60 Query: 61 RGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD 120 RGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD Sbjct: 61 RGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD 120 Query: 121 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS 180 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS Sbjct: 121 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS 180 Query: 181 FENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFSV 232 FENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFSV Sbjct: 181 FENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFSV 232 >537021.9.peg.33_1 Length = 100 Score = 25.4 bits (54), Expect = 0.80, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 17/84 (20%) Query: 105 VKGGQIDFDR-------CIATPDMMPLVGRLGRILGPRGI-MPNLRVGTVTTDVATAVRE 156 +K +I+FD CI D++ +V +G ILG GI + + +G + Sbjct: 10 IKIQEINFDVDIGRLMICIVNADILGIVVFVGNILGEYGINIAHFHLGR---------SQ 60 Query: 157 SKSGAVDFRSEKAGIIHAGIGKVS 180 S A+ F I+++ + K+S Sbjct: 61 STEHAISFLCIDGSILNSVLEKLS 84 >gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 673 Score = 23.9 bits (50), Expect = 2.4, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%) Query: 136 GIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS 180 GI PNL+ ++ T TA+RE + I H+ + K+S Sbjct: 127 GIDPNLQSESLPTIPGTAIRE---------DDDIDIFHSDMAKLS 162 >gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 23.9 bits (50), Expect = 2.5, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 184 KKIEENVLAFVSAVVKAKPSVAKGDYV 210 K EEN L +S + K +++ DYV Sbjct: 144 KHTEENFLFILSKQMNEKDKISRADYV 170 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 22.3 bits (46), Expect = 7.2, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 18/24 (75%) Query: 2 VSKISKRMQQISQGIDRSALYGLS 25 + K+S +M++ ++ I+ S +YG+S Sbjct: 790 IEKVSPQMRRHAKTINFSIIYGIS 813 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.134 0.367 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 130,772 Number of Sequences: 1233 Number of extensions: 5058 Number of successful extensions: 19 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 11 length of query: 232 length of database: 328,796 effective HSP length: 71 effective length of query: 161 effective length of database: 241,253 effective search space: 38841733 effective search space used: 38841733 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 37 (18.9 bits)