HHsearch alignment for GI: 254780147 and conserved domain: COG0080
>COG0080 RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=361.69 Aligned_cols=140 Identities=50% Similarity=0.870 Sum_probs=136.5
Q ss_pred CCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHHH
Q ss_conf 84236899999944556689704468664299989999999999775437975138999838952999985974899999
Q gi|254780147|r 2 AKVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQPPVSFFLK 81 (142)
Q Consensus 2 ~k~v~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i~~P~~s~lik 81 (142)
T Consensus 1 a~k~~~~ikl~v~aGkA~p~PpvGPALG~~Gvni~~f~k~fN~~T~~~~-G~~vPV~Itv~~drsftf~vktPPas~Llk 79 (141)
T COG0080 1 AKKVVKIIKLQVPAGKANPSPPVGPALGQLGVNIMEFCKEFNAATKDEK-GLPVPVVITVYEDRSFTFIVKTPPASALLK 79 (141)
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCEEEEEEEEECCCCEEEEECCCCHHHHHH
T ss_conf 9762169999832665689999874312348788999999999841369-984417999974872799977998799999
Q ss_pred HHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCEEEEC
Q ss_conf 6337666788999630101259999999999885406787899999977430214528939
Q gi|254780147|r 82 KEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGISVVD 142 (142)
Q Consensus 82 k~~g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~~ 142 (142)
T Consensus 80 Ka~g~~~Gs~~p~k~~vG~lt~~qv~eIA~~K~~dl~a~~l~aA~k~I~GTa~SMGv~Veg 140 (141)
T COG0080 80 KAAGIEKGSGKPNKNKVGKLTLAQVREIAKTKMPDLNAKDLEAAVKEILGTARSMGVTVEG 140 (141)
T ss_pred HHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEC
T ss_conf 9868998899977543510429999999998643012677999999986124324478636