HHsearch alignment of GI: 254780147 and MMDB domain: 1qa6_A_

>1qa6_A (A:) Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus}
Probab=99.88  E-value=1.3e-23  Score=159.86  Aligned_cols=67  Identities=51%  Similarity=0.837  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCE
Q ss_conf             5974899999633766678899963010125999999999988540678789999997743021452
Q gi|254780147|r   72 SQPPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGI  138 (142)
Q Consensus        72 ~~P~~s~likk~~g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi  138 (142)
                      ++||+||||++++|+++||++|+++++|+||++|+||||+.|++|+++.+|+++||+|+||||||||
T Consensus         1 ktPp~s~ll~kaagi~kgs~~p~~~~vG~it~~~i~eIAk~K~~d~~~~~l~~~vk~v~GTa~SmGI   67 (67)
T 1qa6_A            1 KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGI   67 (67)
T ss_dssp             CCSCHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHGGGCCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             9798899999997878788999982220216999999999986413899999999999988983489