Query gi|254780147|ref|YP_003064560.1| 50S ribosomal protein L11 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 142
No_of_seqs 113 out of 1395
Neff 5.5
Searched_HMMs 33803
Date Sun May 22 21:11:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780147.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3egv_B 50S ribosomal protein 100.0 0 0 353.3 9.8 139 3-142 1-139 (146)
2 >1vq8_I 50S ribosomal protein 100.0 0 0 349.2 7.5 136 5-141 1-136 (162)
3 >2zkr_i 60S ribosomal protein 100.0 0 0 349.8 5.3 140 1-141 1-144 (165)
4 >2ftc_G L11MT, MRP-L11, 39S ri 100.0 5.8E-35 1.7E-39 226.8 10.1 84 2-85 1-84 (84)
5 >3i1n_I 50S ribosomal protein 100.0 8.3E-36 2.4E-40 231.8 -6.3 84 1-84 1-84 (84)
6 >1wib_A 60S ribosomal protein 100.0 5E-31 1.5E-35 203.6 3.8 82 1-85 7-92 (92)
7 >3cjs_B 50S ribosomal protein 100.0 3.8E-29 1.1E-33 192.5 10.2 71 3-74 2-72 (72)
8 >1mms_A Protein (ribosomal pro 100.0 2.3E-29 6.8E-34 193.8 7.9 72 2-74 1-72 (72)
9 >3bbo_K Ribosomal protein L11; 100.0 1.7E-29 5.2E-34 194.5 4.2 72 2-74 73-144 (144)
10 >1hc8_A Ribosomal protein L11; 99.9 1.9E-27 5.5E-32 182.5 5.7 76 67-142 1-76 (76)
11 >1mms_A Protein (ribosomal pro 99.9 2.4E-24 7.1E-29 164.2 7.5 68 75-142 1-68 (68)
12 >3bbo_K Ribosomal protein L11; 99.9 1.5E-23 4.4E-28 159.5 5.7 68 75-142 1-68 (80)
13 >1qa6_A Ribosomal protein L11; 99.9 1.3E-23 3.9E-28 159.9 5.3 67 72-138 1-67 (67)
14 >3i1n_I 50S ribosomal protein 99.8 7.2E-20 2.1E-24 137.8 -0.2 58 85-142 1-58 (58)
15 >2ftc_G L11MT, MRP-L11, 39S ri 99.7 1.7E-18 5E-23 129.7 5.6 57 86-142 1-61 (61)
16 >2k87_A Non-structural protein 25.9 49 0.0015 14.9 3.3 35 36-71 30-64 (116)
17 >1mzp_A 50S ribosomal protein 23.9 31 0.00093 16.0 1.1 43 66-108 48-91 (94)
18 >3bbo_D Ribosomal protein L1; 23.7 25 0.00075 16.6 0.6 25 63-87 38-62 (88)
19 >1i2a_A 50S ribosomal protein 22.6 35 0.001 15.8 1.1 20 66-85 47-66 (94)
20 >1ad2_A TL2, ribosomal protein 22.1 14 0.00043 18.0 -0.9 19 64-82 39-57 (91)
21 >2zkr_5 60S ribosomal protein 20.9 35 0.001 15.7 0.9 21 65-85 46-66 (93)
22 >2noq_G 60S ribosomal protein 20.8 35 0.001 15.7 0.9 14 67-80 48-61 (93)
No 1
>>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase, cytoplasm; HET: SAH 4MM; 1.75A {Thermus thermophilus} (B:)
Probab=100.00 E-value=0 Score=353.27 Aligned_cols=139 Identities=49% Similarity=0.836 Sum_probs=136.6
Q ss_pred CCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHHHH
Q ss_conf 42368999999445566897044686642999899999999997754379751389998389529999859748999996
Q gi|254780147|r 3 KVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQPPVSFFLKK 82 (142)
Q Consensus 3 k~v~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i~~P~~s~likk 82 (142)
|+++++++|+++||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+|++|+||+|+|++++||+||||++
T Consensus 1 K~v~~~ikl~v~aG~A~p~Pplgp~LG~~Gini~~f~k~fN~~Tk~~~-g~~ipV~i~v~~drsf~~~i~~pp~s~llk~ 79 (146)
T 3egv_B 1 KKVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAATANMG-DAIVPVEITIYADRSFTFVTKTPPASYLIRK 79 (146)
T ss_dssp CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHTTTST-TCEEEEEEEEETTSCEEEEECCCCHHHHC--
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCEEEEEECCCCHHHHHHH
T ss_conf 946899999975475379998751003358898999999999999755-9963179997189626999879987999997
Q ss_pred HCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCEEEEC
Q ss_conf 337666788999630101259999999999885406787899999977430214528939
Q gi|254780147|r 83 EVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGISVVD 142 (142)
Q Consensus 83 ~~g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~~ 142 (142)
++|+++||++|+++++|+||++|+||||+.|++||++.+|+++||+|+|||+||||+|+.
T Consensus 80 ~~g~~~gs~~~~~~~vg~it~~~v~eIAk~K~~dl~~~~l~~~~k~vlGTa~SmGi~V~g 139 (146)
T 3egv_B 80 AAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEVVG 139 (146)
T ss_dssp ------------------------------------------------------------
T ss_pred HHCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEEECEEEEEE
T ss_conf 404445655553235554379999999999877655687999999645132668699993
No 2
>>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (I:)
Probab=100.00 E-value=0 Score=349.23 Aligned_cols=136 Identities=26% Similarity=0.564 Sum_probs=133.7
Q ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHC
Q ss_conf 36899999944556689704468664299989999999999775437975138999838952999985974899999633
Q gi|254780147|r 5 VSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQPPVSFFLKKEV 84 (142)
Q Consensus 5 v~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i~~P~~s~likk~~ 84 (142)
++++|+|+++||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+|++|+||+|+|++++||+||||++++
T Consensus 1 v~~~ikl~i~aG~A~p~Pplgp~LG~~Gini~~f~k~fN~~Tk~~~-G~~ipV~i~v~~dks~~~~i~~P~~s~ll~ka~ 79 (162)
T 1vq8_I 1 MAGTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFD-GTEVPVTVKYDDDGSFEIEVGVPPTAELIKDEA 79 (162)
T ss_dssp -------------------------------------------------------------------CCCCHHHHHHHTT
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEEEEECCCCEEEEEECCCHHHHHHHHH
T ss_conf 9469999987685079998651014569898999999999985337-974669999973885489992898799999985
Q ss_pred CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCEEEE
Q ss_conf 766678899963010125999999999988540678789999997743021452893
Q gi|254780147|r 85 GIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGISVV 141 (142)
Q Consensus 85 g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~ 141 (142)
|+++||++|+++++|+||++|+||||+.|++|+++.+|+++||+|+|||+||||+|+
T Consensus 80 g~~~gs~~p~~~~~g~it~~~v~eIAk~k~~~l~~~~l~~~~k~vlGTa~SmGi~V~ 136 (162)
T 1vq8_I 80 GFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIE 136 (162)
T ss_dssp SCCSCCSSTTTSCCEEECHHHHHHHHHHTTTTCCCSSHHHHHHHHHHHTTTTTEEEC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEECEEEEE
T ss_conf 546666787763267207999999999975140569999999998860414559997
No 3
>>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_K (i:)
Probab=100.00 E-value=0 Score=349.77 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=137.1
Q ss_pred CCCCE----EEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCH
Q ss_conf 98423----68999999445566897044686642999899999999997754379751389998389529999859748
Q gi|254780147|r 1 MAKVV----SRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQPPV 76 (142)
Q Consensus 1 M~k~v----~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i~~P~~ 76 (142)
|+|++ +++|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+|++|+||+|+|++++||+
T Consensus 1 Makk~~~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~-g~~vpV~itv~~dksf~~~i~~p~~ 79 (165)
T 2zkr_i 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWK-GLRITVKLTIQNRQAQIEVVPSASA 79 (165)
T ss_dssp -----------------------------------------------------------------------CCCCCCHHH
T ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCEEEEEECCCHH
T ss_conf 979888881699999961575489998750012468788999999999876505-9853159999436269999678439
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCEEEE
Q ss_conf 99999633766678899963010125999999999988540678789999997743021452893
Q gi|254780147|r 77 SFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGISVV 141 (142)
Q Consensus 77 s~likk~~g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~ 141 (142)
+||+++++++++||++|+++++|+||++|+||||+.|++||++++|+++||+|+||||||||+|+
T Consensus 80 ~~l~~~~~~~~~gs~~p~~~~vG~it~~~v~eIAk~K~~~l~~~~l~~~~k~VlGTa~SmGi~V~ 144 (165)
T 2zkr_i 80 LIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVD 144 (165)
T ss_dssp HHHHHHTCSSCCSSTTTCSSCSEEECHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHTEEEC
T ss_pred HHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEEEEEEE
T ss_conf 99999826546788899870630353999999999864100689999999876377054479975
No 4
>>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_G (G:1-84)
Probab=100.00 E-value=5.8e-35 Score=226.83 Aligned_cols=84 Identities=39% Similarity=0.835 Sum_probs=82.0
Q ss_pred CCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHHH
Q ss_conf 84236899999944556689704468664299989999999999775437975138999838952999985974899999
Q gi|254780147|r 2 AKVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQPPVSFFLK 81 (142)
Q Consensus 2 ~k~v~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i~~P~~s~lik 81 (142)
.|++.+++||+|+||+|+|+|||||+|||+|||||+||++||++|++|+.|++|||+|++|+||||+|++++||+||||+
T Consensus 1 kK~v~~~ikl~i~AG~A~p~PPiGpaLG~~GiNi~~Fck~fN~~T~~~~~g~~ipv~I~v~~Dksf~~~ik~Pp~s~llk 80 (84)
T 2ftc_G 1 KPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLK 80 (84)
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCHHHHHH
T ss_conf 94311899999845763689997400033588889999999998786407986059999878976999978998799999
Q ss_pred HHCC
Q ss_conf 6337
Q gi|254780147|r 82 KEVG 85 (142)
Q Consensus 82 k~~g 85 (142)
+++|
T Consensus 81 kaaG 84 (84)
T 2ftc_G 81 AAAG 84 (84)
T ss_pred HHCC
T ss_conf 9708
No 5
>>3i1n_I 50S ribosomal protein L11; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_I 3e1b_5 3e1d_5 1vs6_I 3i1p_I 3i1r_I 3i1t_I 3i20_I 3i22_I 2qam_I* 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* ... (I:1-84)
Probab=99.98 E-value=8.3e-36 Score=231.82 Aligned_cols=84 Identities=58% Similarity=1.024 Sum_probs=82.8
Q ss_pred CCCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHH
Q ss_conf 98423689999994455668970446866429998999999999977543797513899983895299998597489999
Q gi|254780147|r 1 MAKVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQPPVSFFL 80 (142)
Q Consensus 1 M~k~v~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i~~P~~s~li 80 (142)
|+|++.+++||+|+||+|+|+|||||+|||+|||+|+||+|||++|++|+.|++|||+|++|+||||+|++++||+||||
T Consensus 1 MaKkv~~~ikl~i~aG~A~P~PPiGp~LG~~GINi~~Fck~fN~~T~~~~~g~~vpv~I~v~~Dksf~~~i~~Pp~s~ll 80 (84)
T 3i1n_I 1 MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLL 80 (84)
T ss_dssp -CCCCSSBCCCCSCGGGCSCTTTTTTTTCCSSCCTTGGGTTTHHHHHHHCSCSCCCCBCBCCSSSSCBCCCCCCCGGGTT
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEECCCCHHHHH
T ss_conf 98640279999975575479998740112358898999999999852434897567899994585068998699889999
Q ss_pred HHHC
Q ss_conf 9633
Q gi|254780147|r 81 KKEV 84 (142)
Q Consensus 81 kk~~ 84 (142)
+++|
T Consensus 81 kkaA 84 (84)
T 3i1n_I 81 KKAA 84 (84)
T ss_dssp TSSS
T ss_pred HHHC
T ss_conf 8643
No 6
>>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} (A:)
Probab=99.96 E-value=5e-31 Score=203.60 Aligned_cols=82 Identities=18% Similarity=0.302 Sum_probs=77.5
Q ss_pred CCCCE----EEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCH
Q ss_conf 98423----68999999445566897044686642999899999999997754379751389998389529999859748
Q gi|254780147|r 1 MAKVV----SRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQPPV 76 (142)
Q Consensus 1 M~k~v----~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i~~P~~ 76 (142)
|+|++ +++++|+++||+|+|+|||||+|||+|||+|+||+|||++|++|+ |++|||+|++ +||+|+|++ +||+
T Consensus 7 M~kK~~~~~v~~i~l~v~aG~A~p~pplGP~LG~~Gin~~~f~k~fN~~T~~~~-G~~vpV~itv-~drs~~~~v-~Pp~ 83 (92)
T 1wib_A 7 GPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWK-GLRITVKLTI-QNRQAQIEV-VPSA 83 (92)
T ss_dssp CCCCCCSSSCEEEEEEEETTCCCCSSCSHHHHTTTCSCHHHHHHHHHHHTTTTT-TSEEEEEEEE-ETTEEECCB-CSCC
T ss_pred CCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEEEE-ECCEEEEEE-CCCH
T ss_conf 999889781699999985574379997661104447789999999997552306-9877799999-585689998-3988
Q ss_pred HHHHHHHCC
Q ss_conf 999996337
Q gi|254780147|r 77 SFFLKKEVG 85 (142)
Q Consensus 77 s~likk~~g 85 (142)
||||++++|
T Consensus 84 s~ll~kaaG 92 (92)
T 1wib_A 84 SALSGPSSG 92 (92)
T ss_dssp CCCCCCSCC
T ss_pred HHHHHHHCC
T ss_conf 999887419
No 7
>>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} (B:)
Probab=99.96 E-value=3.8e-29 Score=192.54 Aligned_cols=71 Identities=54% Similarity=0.881 Sum_probs=68.6
Q ss_pred CCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCC
Q ss_conf 423689999994455668970446866429998999999999977543797513899983895299998597
Q gi|254780147|r 3 KVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQP 74 (142)
Q Consensus 3 k~v~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i~~P 74 (142)
|++.+++||+++||+|+|+|||||+|||+|||+|+||++||++|++++ |++|||+|++|+||||+|++++|
T Consensus 2 Kkv~~~ikl~i~aG~A~p~PpiGp~LG~~GiNi~~Fck~FN~~Tk~~~-g~~ipv~I~v~~Dksf~~~i~~P 72 (72)
T 3cjs_B 2 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMG-DAIVPVEITIYADRSFTFVTKTP 72 (72)
T ss_dssp CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHHGGGC-SCEEEEEEEEETTSCEEEEECCC
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCEEEEECCC
T ss_conf 652589999986477778999773002368789999999999986547-98066899997898389996188
No 8
>>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrepton; 2.57A {Thermotoga maritima} (A:1-72)
Probab=99.96 E-value=2.3e-29 Score=193.81 Aligned_cols=72 Identities=53% Similarity=0.958 Sum_probs=69.7
Q ss_pred CCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCC
Q ss_conf 8423689999994455668970446866429998999999999977543797513899983895299998597
Q gi|254780147|r 2 AKVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQP 74 (142)
Q Consensus 2 ~k~v~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i~~P 74 (142)
||++.+++||+++||+|+|+|||||+|||+|||||+||++||++|+++. |++|||+|++|+||||+|++++|
T Consensus 1 aK~v~~~ikl~i~aG~A~p~PPiGp~LG~~GiNi~~Fck~fN~~T~~~~-g~~ipV~I~v~~Dksf~~~i~~P 72 (72)
T 1mms_A 1 AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKA-GMILPVVITVYEDKSFTFIIKTP 72 (72)
T ss_dssp ------CEEEEEETTCCCCTTTTTHHHHTTTCCHHHHHHHHHHHTTTSC-SSEEEEEEEECTTSCEEEEECCC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCEEEEEECCCCEEEEECCC
T ss_conf 9725899999976476279998640003568898999999999987304-66753699997796169998699
No 9
>>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (K:1-144)
Probab=99.95 E-value=1.7e-29 Score=194.51 Aligned_cols=72 Identities=51% Similarity=0.947 Sum_probs=68.6
Q ss_pred CCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCC
Q ss_conf 8423689999994455668970446866429998999999999977543797513899983895299998597
Q gi|254780147|r 2 AKVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQP 74 (142)
Q Consensus 2 ~k~v~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i~~P 74 (142)
+|++.++|||+|+||+|+|+|||||+|||+|||||+||||||++|+++. |++|||+|++|+||+|+|++++|
T Consensus 73 aKkv~~~ikL~I~AGkA~P~PPiGPaLGq~GINIm~FcKeFN~~Tk~~~-G~piPV~ItVy~DKSF~f~iktP 144 (144)
T 3bbo_K 73 AKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKP-GFVIPVEITVFDDKSFTFILKTP 144 (144)
T ss_dssp CCCCSSEEEECCBTTBCCCSTTTTTTTTTTSSCTTSSHHHHHHHGGGSC-SSBCCEEEEECSSSCEEEEECCC
T ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCEEEEEECCCCEEEEECCC
T ss_conf 7447899999985475079998740013469898999999999973558-99674489994698459998798
No 10
>>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} (A:)
Probab=99.94 E-value=1.9e-27 Score=182.53 Aligned_cols=76 Identities=50% Similarity=0.817 Sum_probs=74.9
Q ss_pred EEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCEEEEC
Q ss_conf 9999859748999996337666788999630101259999999999885406787899999977430214528939
Q gi|254780147|r 67 FTFTMSQPPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGISVVD 142 (142)
Q Consensus 67 f~~~i~~P~~s~likk~~g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~~ 142 (142)
|+|++++||+||||++++|+++||++|+++++|+||++|+||||+.|++||++.+|+++||+|+||||||||+||+
T Consensus 1 f~~~i~~Pp~s~ll~kaagi~kGs~~p~~~~~G~it~~~i~eIAk~K~~dl~~~~l~~~~k~V~GTa~SmGi~V~g 76 (76)
T 1hc8_A 1 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVEN 76 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHTCSCCCSSTTTCCCEEECHHHHHHHHHHSGGGCCCSSHHHHHHHHHHHHHHHTEEEC-
T ss_pred CEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEC
T ss_conf 9489768989999999968898889998720200549999999999876407999999999989648417689769
No 11
>>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrepton; 2.57A {Thermotoga maritima} (A:73-140)
Probab=99.90 E-value=2.4e-24 Score=164.20 Aligned_cols=68 Identities=50% Similarity=0.806 Sum_probs=67.3
Q ss_pred CHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCEEEEC
Q ss_conf 48999996337666788999630101259999999999885406787899999977430214528939
Q gi|254780147|r 75 PVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGISVVD 142 (142)
Q Consensus 75 ~~s~likk~~g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~~ 142 (142)
|+||||++++|+++||++|+++++|+||++|+||||+.|++|+++.+++++||+|+||||||||+|||
T Consensus 1 P~s~ll~kaagi~kGs~~p~~~~vG~it~~qv~eIAk~K~~dl~~~~l~~~~k~v~Gta~SmGi~V~~ 68 (68)
T 1mms_A 1 PASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD 68 (68)
T ss_dssp CHHHHHHHHHTCSSCCSSTTTSCCEEECHHHHHHHHHHHGGGCCCSSHHHHHHHHHHHHTTTTEEEC-
T ss_pred CHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEHEECEEEEEC
T ss_conf 77999997237766667999724315439999999999876646577999999524133447479989
No 12
>>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (K:145-224)
Probab=99.89 E-value=1.5e-23 Score=159.53 Aligned_cols=68 Identities=41% Similarity=0.636 Sum_probs=66.7
Q ss_pred CHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCEEEEC
Q ss_conf 48999996337666788999630101259999999999885406787899999977430214528939
Q gi|254780147|r 75 PVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGISVVD 142 (142)
Q Consensus 75 ~~s~likk~~g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~~ 142 (142)
|+||||++++|+++||++|+++++|+||++|+||||+.|++|+++.+|+++||+|+||||||||+|+.
T Consensus 1 Pts~ll~kaagi~kgs~~p~~~~vG~it~~~i~eIAk~K~~d~~~~~l~~~vk~v~GtarSmGi~V~g 68 (80)
T 3bbo_K 1 PASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDP 68 (80)
T ss_dssp CTTHHHHHHHTCSSCCSSTTTSCCEEECHHHHHHHHHHTCTTSCCSSHHHHHHHHHHHHTTTTEEEC-
T ss_pred CHHHHHHHHCCCCCCCCCCCCCHHCEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEEECEEEEEC
T ss_conf 67899987507777778876321106639999999999887627666999999845132258689978
No 13
>>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} (A:)
Probab=99.88 E-value=1.3e-23 Score=159.86 Aligned_cols=67 Identities=51% Similarity=0.837 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCE
Q ss_conf 5974899999633766678899963010125999999999988540678789999997743021452
Q gi|254780147|r 72 SQPPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGI 138 (142)
Q Consensus 72 ~~P~~s~likk~~g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi 138 (142)
++||+||||++++|+++||++|+++++|+||++|+||||+.|++|+++.+|+++||+|+||||||||
T Consensus 1 ktPp~s~ll~kaagi~kgs~~p~~~~vG~it~~~i~eIAk~K~~d~~~~~l~~~vk~v~GTa~SmGI 67 (67)
T 1qa6_A 1 KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGI 67 (67)
T ss_dssp CCSCHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHGGGCCCSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9798899999997878788999982220216999999999986413899999999999988983489
No 14
>>3i1n_I 50S ribosomal protein L11; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_I 3e1b_5 3e1d_5 1vs6_I 3i1p_I 3i1r_I 3i1t_I 3i20_I 3i22_I 2qam_I* 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* ... (I:85-142)
Probab=99.75 E-value=7.2e-20 Score=137.79 Aligned_cols=58 Identities=50% Similarity=0.732 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCEEEEC
Q ss_conf 7666788999630101259999999999885406787899999977430214528939
Q gi|254780147|r 85 GIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGISVVD 142 (142)
Q Consensus 85 g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~~ 142 (142)
|+++||++|+++.+|+||++|+||||+.|++||++.+|+++||+|+||||||||+|||
T Consensus 1 Gi~kGs~~p~~~~vG~it~~qv~eIA~~K~~Dl~~~~l~~a~k~v~GTArsMGI~V~~ 58 (58)
T 3i1n_I 1 GIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED 58 (58)
T ss_dssp SCSSCCSSCBTTBCBCCBSSTTHHHHHTCTTCCSCSCTTTHHHHHHHHTTTTSBCCBC
T ss_pred CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEEECEEEEEC
T ss_conf 6664456898633558649999999999887756898999999512442557589879
No 15
>>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_G (G:85-145)
Probab=99.74 E-value=1.7e-18 Score=129.68 Aligned_cols=57 Identities=37% Similarity=0.614 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCEEEEECHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHEEECCEEEEC
Q ss_conf 6667889996301012599999999998854----06787899999977430214528939
Q gi|254780147|r 86 IKSGSKLPGKESCGSITRENIRKIAQLKMQD----MGAIDIEGAMRMVEGSACSMGISVVD 142 (142)
Q Consensus 86 ~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d----~~~~~l~~~vk~VlGTa~SmGi~V~~ 142 (142)
+++||++|+++++|+||++|+||||+.|++| |++.+|+++||+|+||||||||+||.
T Consensus 1 I~kGs~~p~~~~vG~it~~qi~eIAk~K~~D~~~~l~~~~l~~a~k~i~GtArsmGI~V~k 61 (61)
T 2ftc_G 1 IEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVK 61 (61)
T ss_pred CCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHEECEEEEEC
T ss_conf 8877655775230113399999999997726432346878999999978104347479979
No 16
>>2k87_A Non-structural protein 3 of replicase polyprotein 1A; NSP3E, NAB, cytoplasm, hydrolase, membrane, metal-binding, protease; NMR {Sars coronavirus} (A:)
Probab=25.88 E-value=49 Score=14.85 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEE
Q ss_conf 999999999977543797513899983895299998
Q gi|254780147|r 36 MAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTM 71 (142)
Q Consensus 36 ~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i 71 (142)
..+|.+||+++. |....++.-.+|.+.+-+=+++.
T Consensus 30 ~~i~~~lN~~lg-f~k~~~~el~~T~~P~~~GDVVl 64 (116)
T 2k87_A 30 TKFADDLNQMTG-FTKPASRELSVTFFPDLNGDVVA 64 (116)
T ss_dssp HHHHHHHHHHTT-CCSSCSEEEEEEETTCCCSSEEE
T ss_pred CCHHHHHHHHHC-CCCCCCEEEEEEECCCCCCCEEE
T ss_conf 707898988768-99887568899976678777999
No 17
>>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} (A:59-152)
Probab=23.90 E-value=31 Score=16.02 Aligned_cols=43 Identities=5% Similarity=-0.079 Sum_probs=20.9
Q ss_pred EEEEEECCCCHHHHHHHHCCCCCCC-CCCCCCEEEEECHHHHHH
Q ss_conf 2999985974899999633766678-899963010125999999
Q gi|254780147|r 66 SFTFTMSQPPVSFFLKKEVGIKSGS-KLPGKESCGSITRENIRK 108 (142)
Q Consensus 66 sf~~~i~~P~~s~likk~~g~~kgs-~~p~~~~~g~it~~~i~e 108 (142)
.|++.+-+|..--.|-+.+|.--|. +.--....|+.++....+
T Consensus 48 ~fd~~ia~~~~m~~l~k~lG~iLGprGlmP~~k~gt~di~~~v~ 91 (94)
T 1mzp_A 48 QNEWFLINQESXALAGRILGPALGPRGKFPTPLPNTADISEYIN 91 (94)
T ss_dssp SCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCSSSCCHHHHH
T ss_pred CCCEEEECCCHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 26759982850333322125311125688975036663799999
No 18
>>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (D:184-271)
Probab=23.69 E-value=25 Score=16.58 Aligned_cols=25 Identities=8% Similarity=-0.129 Sum_probs=16.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHCCCC
Q ss_conf 8952999985974899999633766
Q gi|254780147|r 63 KDKSFTFTMSQPPVSFFLKKEVGIK 87 (142)
Q Consensus 63 ~dksf~~~i~~P~~s~likk~~g~~ 87 (142)
....|+|.+-+|..--.|.+...+-
T Consensus 38 ~~~~~d~~ia~~~~m~~l~~lg~iL 62 (88)
T 3bbo_D 38 GFMDFDKLIATSDMMAKVASLGRIL 62 (88)
T ss_dssp TCCCCSEEEECSSSHHHHGGGGGTT
T ss_pred CCCCCCEEECCCHHHHHHHHHHHHC
T ss_conf 6632001111614555553431110
No 19
>>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} (A:55-148)
Probab=22.56 E-value=35 Score=15.77 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=9.6
Q ss_pred EEEEEECCCCHHHHHHHHCC
Q ss_conf 29999859748999996337
Q gi|254780147|r 66 SFTFTMSQPPVSFFLKKEVG 85 (142)
Q Consensus 66 sf~~~i~~P~~s~likk~~g 85 (142)
.|++.+-+|..--.|-+.+|
T Consensus 47 ~fd~~ia~~~~m~~i~k~lg 66 (94)
T 1i2a_A 47 AHDFFIAQADLMPLIGRYMG 66 (94)
T ss_dssp HCSEEEEEGGGHHHHHHHTH
T ss_pred CCCEEEECCHHHHHHHHHHH
T ss_conf 56679972227888999871
No 20
>>1ad2_A TL2, ribosomal protein L1; RNA binding, protein synthesis, mutant; 1.90A {Thermus thermophilus} (A:69-159)
Probab=22.11 E-value=14 Score=18.01 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=10.3
Q ss_pred CCEEEEEECCCCHHHHHHH
Q ss_conf 9529999859748999996
Q gi|254780147|r 64 DKSFTFTMSQPPVSFFLKK 82 (142)
Q Consensus 64 dksf~~~i~~P~~s~likk 82 (142)
...|+|.+-+|..--.|.+
T Consensus 39 ~~~~d~~la~~~~m~~l~~ 57 (91)
T 1ad2_A 39 WMDFDAVVATPDVMGAVGS 57 (91)
T ss_dssp CCCCSEEEECGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 8521268767999999998
No 21
>>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (5:55-147)
Probab=20.88 E-value=35 Score=15.74 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=12.2
Q ss_pred CEEEEEECCCCHHHHHHHHCC
Q ss_conf 529999859748999996337
Q gi|254780147|r 65 KSFTFTMSQPPVSFFLKKEVG 85 (142)
Q Consensus 65 ksf~~~i~~P~~s~likk~~g 85 (142)
+.|+|.+-+|..--.+-+.+|
T Consensus 46 ~~~d~~iA~~~~m~~l~k~lg 66 (93)
T 2zkr_5 46 DDTDFFIAEKGLMQDIGRYLG 66 (93)
T ss_dssp HHCSEEEECTTTHHHHHHHTH
T ss_pred CCCCEEEECHHHHHHHHHHCC
T ss_conf 457758843778766544217
No 22
>>2noq_G 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_A (G:57-149)
Probab=20.80 E-value=35 Score=15.72 Aligned_cols=14 Identities=0% Similarity=-0.033 Sum_probs=5.3
Q ss_pred EEEEECCCCHHHHH
Q ss_conf 99998597489999
Q gi|254780147|r 67 FTFTMSQPPVSFFL 80 (142)
Q Consensus 67 f~~~i~~P~~s~li 80 (142)
|+|.+-+|..--.+
T Consensus 48 ~d~~ia~~~~m~~l 61 (93)
T 2noq_G 48 YNAFIASEVLIKQV 61 (93)
T ss_dssp CSEEEEEGGGGTHH
T ss_pred CCEEEECHHHHHHH
T ss_conf 68899650577677
Done!