HHsearch results for GI: 254780147 and protein with PDBid: 1qa6_A

>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C

Probab=99.89  E-value=3.9e-24  Score=162.03  Aligned_cols=67  Identities=51%  Similarity=0.837  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCE
Q ss_conf             5974899999633766678899963010125999999999988540678789999997743021452
Q gi|254780147|r   72 SQPPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGI  138 (142)
Q Consensus        72 ~~P~~s~likk~~g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi  138 (142)
                      ++||+||||++++|+++||++|+++++|+||++|+||||+.|++|||+.+++++||+|+||||||||
T Consensus         1 KtPP~s~llkkaagi~kGs~~p~~~~vG~it~~qv~eIAk~K~~dl~~~~l~~a~k~v~GtArSMGI   67 (67)
T 1qa6_A            1 KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGI   67 (67)
T ss_dssp             CCSCHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHGGGCCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             9898899999997889788999983220126999999999875103899999999999988983489