HHsearch results for GI: 254780147 and protein with PDBid: 3ofq_I
>3ofq_I 50S ribosomal protein L11; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Probab=100.00 E-value=0 Score=365.46 Aligned_cols=141 Identities=55% Similarity=0.901 Sum_probs=139.3
Q ss_pred CCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHHH
Q ss_conf 84236899999944556689704468664299989999999999775437975138999838952999985974899999
Q gi|254780147|r 2 AKVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQPPVSFFLK 81 (142)
Q Consensus 2 ~k~v~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i~~P~~s~lik 81 (142)
||++.++|||+++||+|+|+|||||+|||+|||+|+||++||++|++|+.|+++||+|++|+||+|+|++++||+||||+
T Consensus 1 aK~v~~~ikl~v~aG~A~p~PplGP~LG~~Gini~~f~k~fN~~T~~~k~g~~vpV~Itv~~dksf~~~i~~Pp~s~li~ 80 (141)
T 3ofq_I 1 AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLK 80 (141)
T ss_dssp CCCCCCCCCCCCCTTCCSSSSSSSTTTCSSSCCSSTTTSTTSSTTTTTCSSSCCCCCCCCCSSSCCCCCCCCCCSTTTGG
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEEEECCCCHHHHHH
T ss_conf 97247999999755852799987511135698989999999998763107964778999957952999977997599998
Q ss_pred HHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCEEEEC
Q ss_conf 6337666788999630101259999999999885406787899999977430214528939
Q gi|254780147|r 82 KEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGISVVD 142 (142)
Q Consensus 82 k~~g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~~ 142 (142)
+++|+++||++|+++++|+||++|+||||+.|++||++.+|+++||+|+||||||||+|+|
T Consensus 81 k~~g~~kgs~~p~~~~vG~it~~~v~eIAk~K~~dl~~~~l~~~vk~V~GTa~SmGi~V~~ 141 (141)
T 3ofq_I 81 KAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED 141 (141)
T ss_dssp GSSSCSSCCSSSSSSCCCCCCTTSTTTSSSSSSSSSSCCSTTSSSHHHHTTTTTTSCCCCC
T ss_pred HHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEEECEEEEEC
T ss_conf 7427764468998642564719999999999888766788999999845312447589879