RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780147|ref|YP_003064560.1| 50S ribosomal protein L11
[Candidatus Liberibacter asiaticus str. psy62]
         (142 letters)



>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal
          domain {Escherichia coli [TaxId: 562]}
          Length = 71

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 42/69 (60%), Positives = 51/69 (73%)

Query: 3  KVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCY 62
          K V   VKLQ+ +G A PSPPVGPA+GQ G+ IM FCKAFNA T+ +EKG+PIP  +T Y
Sbjct: 1  KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVY 60

Query: 63 KDKSFTFTM 71
           D+SFTF  
Sbjct: 61 ADRSFTFVT 69


>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 74

 Score = 97.0 bits (242), Expect = 5e-22
 Identities = 37/73 (50%), Positives = 48/73 (65%)

Query: 68  TFTMSQPPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMR 127
           TF    PP +  LKK  GI+SGS  P +    +I R+ +R+IA+LKM D+ A  IE AMR
Sbjct: 1   TFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMR 60

Query: 128 MVEGSACSMGISV 140
           M+EG+A SMGI V
Sbjct: 61  MIEGTARSMGIVV 73


>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal
          domain {Thermus thermophilus [TaxId: 274]}
          Length = 70

 Score = 90.5 bits (225), Expect = 5e-20
 Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 3  KVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCY 62
          K V  +VKLQ+ +G A P+PPVGPA+GQ G  IM F KAFNAAT  M   I +P  +T Y
Sbjct: 2  KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAI-VPVEITIY 60

Query: 63 KDKSFTFTM 71
           D+SFTF  
Sbjct: 61 ADRSFTFVT 69


>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain
           {Thermotoga maritima [TaxId: 2336]}
          Length = 70

 Score = 90.5 bits (225), Expect = 5e-20
 Identities = 34/68 (50%), Positives = 47/68 (69%)

Query: 74  PPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSA 133
           PP SF LKK  GI+ GS  P ++  G +TR+ I +IA+ KM D+ A  +E AM+++EG+A
Sbjct: 3   PPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTA 62

Query: 134 CSMGISVV 141
            SMGI VV
Sbjct: 63  KSMGIEVV 70


>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 68

 Score = 90.4 bits (225), Expect = 6e-20
 Identities = 33/67 (49%), Positives = 42/67 (62%)

Query: 74  PPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSA 133
           PP +  LKK  GIKSGS  P K+  G I+R  +++IAQ K  DM   DIE   R +EG+A
Sbjct: 1   PPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTA 60

Query: 134 CSMGISV 140
            SMG+ V
Sbjct: 61  RSMGLVV 67


>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal
          domain {Thermotoga maritima [TaxId: 2336]}
          Length = 63

 Score = 90.5 bits (225), Expect = 6e-20
 Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 1/63 (1%)

Query: 9  VKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFT 68
          +KLQ+ +G A P+PPVGPA+GQ G+ IM FCK FNA T     G+ +P  +T Y+DKSFT
Sbjct: 2  IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADK-AGMILPVVITVYEDKSFT 60

Query: 69 FTM 71
          F +
Sbjct: 61 FII 63


>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S ribosomal
           protein L11 [Deinococcus deserti VCD115] 
           gi|226317454|gb|ACO45450.1| putative 50S ribosomal
           protein L11 [Deinococcus deserti VCD115]  E=8e-31
           s/c=1.88 id=89% cov=101%
          Length = 72

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 25/68 (36%), Positives = 40/68 (58%)

Query: 74  PPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSA 133
           PP+S+ ++K  G+  GS  P K   G +  E + +IA+ KM D+ A  +E A   V G+A
Sbjct: 1   PPMSYLIRKAAGLSKGSATPNKAKVGKLNWEQVLEIAKTKMPDLNAGSLEAAANTVAGTA 60

Query: 134 CSMGISVV 141
            SMG+++ 
Sbjct: 61  RSMGVTIE 68


>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 67

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 29/65 (44%), Positives = 43/65 (66%)

Query: 74  PPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSA 133
           PP S+ ++K  G++ G+  PG+E  G IT E + +IA+ KM D+   D+E A RM+ GSA
Sbjct: 2   PPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSA 61

Query: 134 CSMGI 138
            SMG+
Sbjct: 62  RSMGV 66


>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain
           {Archaeon Haloarcula marismortui [TaxId: 2238]}
          Length = 70

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 18/67 (26%), Positives = 40/67 (59%)

Query: 74  PPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSA 133
           PP +  +K E G ++GS  P ++    ++ + +++IA+ K  D+ + D+  A + V G+ 
Sbjct: 3   PPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTC 62

Query: 134 CSMGISV 140
            S+G+++
Sbjct: 63  TSLGVTI 69


>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 92

 Score = 78.3 bits (193), Expect = 2e-16
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 7  RIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKS 66
          ++V L+   G    +  + P IG  G+           AT    KG+ I   +T  +++ 
Sbjct: 17 KVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDW-KGLRITVKLT-IQNRQ 74

Query: 67 FTFTMSQPPVSFFLKKEVG 85
              +  P  S       G
Sbjct: 75 AQIEVV-PSASALSGPSSG 92


>d1bsma2 d.44.1.1 (A:87-201) Cambialistic superoxide dismutase
          {Propionibacterium shermanii [TaxId: 1752]}
          Length = 115

 Score = 25.4 bits (55), Expect = 2.1
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 15 SGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGM 49
          S   +P+  +G AI +           F AA  G+
Sbjct: 1  SAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGI 35


>d1jlxa2 b.42.3.1 (A:154-299) Agglutinin {Love-lies-bleeding
           (Amaranthus caudatus) [TaxId: 3567]}
          Length = 146

 Score = 24.8 bits (54), Expect = 3.1
 Identities = 6/25 (24%), Positives = 15/25 (60%)

Query: 93  PGKESCGSITRENIRKIAQLKMQDM 117
           PG  +C +   +N+ + A L++ ++
Sbjct: 122 PGFINCMNAATQNVDETAILEIIEL 146


>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 166

 Score = 24.3 bits (52), Expect = 4.8
 Identities = 3/36 (8%), Positives = 16/36 (44%)

Query: 102 TRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMG 137
            +    ++ +    +    +++     ++GS+ ++G
Sbjct: 38  AQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALG 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0687    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 501,805
Number of extensions: 21394
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 18
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)