BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780147|ref|YP_003064560.1| 50S ribosomal protein L11
[Candidatus Liberibacter asiaticus str. psy62]
         (142 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780147|ref|YP_003064560.1| 50S ribosomal protein L11 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 142

 Score =  284 bits (726), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MAKVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVT 60
           MAKVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVT
Sbjct: 1   MAKVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVT 60

Query: 61  CYKDKSFTFTMSQPPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAI 120
           CYKDKSFTFTMSQPPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAI
Sbjct: 61  CYKDKSFTFTMSQPPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAI 120

Query: 121 DIEGAMRMVEGSACSMGISVVD 142
           DIEGAMRMVEGSACSMGISVVD
Sbjct: 121 DIEGAMRMVEGSACSMGISVVD 142


>gi|254780898|ref|YP_003065311.1| hypothetical protein CLIBASIA_03975 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 207

 Score = 24.6 bits (52), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 69 FTMSQPPVSF--FLKKEVGIKSGSKLPGK 95
          +  +QP  +F  +LKKE GIKS   L GK
Sbjct: 53 YRSAQPNGTFIEYLKKEYGIKSILNLRGK 81


>gi|254780444|ref|YP_003064857.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 223

 Score = 23.1 bits (48), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 75  PVSFFLKKEVGIKSGSKLPGKESCGSI---TRENIRKIAQLKMQD 116
           P SF   K  GI+  ++ P  ES   I   T E I ++  L   D
Sbjct: 35  PTSFNKSKRFGIEGRNRWPSTESIFKILAATNETICQLLDLPFSD 79


>gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 623

 Score = 22.3 bits (46), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 42  FNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQPPVS 77
           FN+ TEG+ +GI I    +   D       S P +S
Sbjct: 377 FNSNTEGIARGISINRDCSLGDDVHRENMFSAPEIS 412


>gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 554

 Score = 21.9 bits (45), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 92  LPGKESCGSITRENIRK 108
           L G+ +CGS+TR+ I +
Sbjct: 187 LVGEGACGSLTRQLIER 203


>gi|254781218|ref|YP_003065631.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 205

 Score = 21.9 bits (45), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 104 ENIRKIAQLKMQDM--GAIDIEGAMRMVEGSACSMGI 138
           ++IRK      ++M  GA  +E A+ + E   CS  I
Sbjct: 37  KDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSI 73


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.133    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,202
Number of Sequences: 1233
Number of extensions: 2958
Number of successful extensions: 10
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 328,796
effective HSP length: 66
effective length of query: 76
effective length of database: 247,418
effective search space: 18803768
effective search space used: 18803768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)