HHsearch alignment for GI: 254780148 and conserved domain: COG0250

>COG0250 NusG Transcription antiterminator [Transcription].
Probab=100.00  E-value=9.8e-45  Score=287.77  Aligned_cols=177  Identities=47%  Similarity=0.826  Sum_probs=167.2

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHH
Q ss_conf             98861899952885389999999999977981114326631310127720203566412033099999961865224442
Q gi|254780148|r    1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIK   80 (177)
Q Consensus         1 M~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~   80 (177)
T Consensus         1 ~~~~Wyvv~~~sg~E~~V~~~l~~~~~~~~~~~~~~~v~vp~E~v~e~~~~~~~~~e~~~fpGYVlVem~~~~~~w~~Vr   80 (178)
T COG0250           1 LMKRWYVVQTYSGQEKKVKENLERKAELLGMEDLIFEVLVPTEEVVEVKGKRKVIVERKLFPGYVLVEMDMTDEAWHLVR   80 (178)
T ss_pred             CCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECEEEEEEECCCEEEEEECCCCCCEEEEEEECCCCEEEEEE
T ss_conf             98528999943547999999999999866996302467723278998317558997126788579999982774589986


Q ss_pred             CCCEEEEEECCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEE
Q ss_conf             033036643278-8610025889999997653222100001234789779995187789719999982889889999981
Q gi|254780148|r   81 DTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI  159 (177)
Q Consensus        81 ~t~gV~~~l~~~-~~P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i  159 (177)
T Consensus        81 ~tpgV~GfVg~~~~~P~pi~~~ei~~~l~~~~~~~~~~~~~~~~e~Gd~VrI~~GpFa~f~g~V~evd~ek~~~~v~v~i  160 (178)
T COG0250          81 NTPGVTGFVGSGGAKPVPLSEEEIEHILGFLEEEVAPKKPKVDFEPGDVVRIIDGPFAGFKAKVEEVDEEKGKLKVEVSI  160 (178)
T ss_pred             CCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEEE
T ss_conf             48971798636899870268999998876401224588632467899889991667899517899984767689999997


Q ss_pred             CCCEEEEEECHHHHEECC
Q ss_conf             687047885678712339
Q gi|254780148|r  160 FGRVTPVELAYNQVEKIV  177 (177)
Q Consensus       160 ~Gr~~~v~l~~~~ieki~  177 (177)
T Consensus       161 fgr~tPVel~~~qVek~~  178 (178)
T COG0250         161 FGRPTPVELEFDQVEKLK  178 (178)
T ss_pred             ECCCEEEEEECCCEEEEC
T ss_conf             177407998601089709