HHsearch alignment for GI: 254780148 and conserved domain: COG0250
>COG0250 NusG Transcription antiterminator [Transcription].
Probab=100.00 E-value=9.8e-45 Score=287.77 Aligned_cols=177 Identities=47% Similarity=0.826 Sum_probs=167.2
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHH
Q ss_conf 98861899952885389999999999977981114326631310127720203566412033099999961865224442
Q gi|254780148|r 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIK 80 (177)
Q Consensus 1 M~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~ 80 (177)
T Consensus 1 ~~~~Wyvv~~~sg~E~~V~~~l~~~~~~~~~~~~~~~v~vp~E~v~e~~~~~~~~~e~~~fpGYVlVem~~~~~~w~~Vr 80 (178)
T COG0250 1 LMKRWYVVQTYSGQEKKVKENLERKAELLGMEDLIFEVLVPTEEVVEVKGKRKVIVERKLFPGYVLVEMDMTDEAWHLVR 80 (178)
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECEEEEEEECCCEEEEEECCCCCCEEEEEEECCCCEEEEEE
T ss_conf 98528999943547999999999999866996302467723278998317558997126788579999982774589986
Q ss_pred CCCEEEEEECCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEE
Q ss_conf 033036643278-8610025889999997653222100001234789779995187789719999982889889999981
Q gi|254780148|r 81 DTPKVIGFLGTG-ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVI 159 (177)
Q Consensus 81 ~t~gV~~~l~~~-~~P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i 159 (177)
T Consensus 81 ~tpgV~GfVg~~~~~P~pi~~~ei~~~l~~~~~~~~~~~~~~~~e~Gd~VrI~~GpFa~f~g~V~evd~ek~~~~v~v~i 160 (178)
T COG0250 81 NTPGVTGFVGSGGAKPVPLSEEEIEHILGFLEEEVAPKKPKVDFEPGDVVRIIDGPFAGFKAKVEEVDEEKGKLKVEVSI 160 (178)
T ss_pred CCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEEE
T ss_conf 48971798636899870268999998876401224588632467899889991667899517899984767689999997
Q ss_pred CCCEEEEEECHHHHEECC
Q ss_conf 687047885678712339
Q gi|254780148|r 160 FGRVTPVELAYNQVEKIV 177 (177)
Q Consensus 160 ~Gr~~~v~l~~~~ieki~ 177 (177)
T Consensus 161 fgr~tPVel~~~qVek~~ 178 (178)
T COG0250 161 FGRPTPVELEFDQVEKLK 178 (178)
T ss_pred ECCCEEEEEECCCEEEEC
T ss_conf 177407998601089709