HHsearch alignment for GI: 254780148 and conserved domain: TIGR00922
>TIGR00922 nusG transcription termination/antitermination factor NusG; InterPro: IPR001062 Bacterial transcription antitermination protein, nusG, is a component of the transcription complex and interacts with the termination factor Rho and RNA polymerase , . NusG is a bacterial transcriptional elongation factor involved in transcription termination and anti-termination .; GO: 0003711 transcription elongation regulator activity, 0006355 regulation of transcription DNA-dependent.
Probab=100.00 E-value=0 Score=330.55 Aligned_cols=172 Identities=47% Similarity=0.861 Sum_probs=167.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEE-CCEEE---EEECCEECEEEEEEEECCCCCHHHHH
Q ss_conf 189995288538999999999997798111432663131012772-02035---66412033099999961865224442
Q gi|254780148|r 5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKV---NSERRFFPGYVLIKAVMTDKVYHTIK 80 (177)
Q Consensus 5 Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~-~g~~~---~~~~plfpgYiFv~~~~~~~~~~~i~ 80 (177)
T Consensus 1 WYvvq~~SG~E~~Vk~~l~~~~~~~~~~D~i~~v~vP~E~v~Ei~~~Gk~~~KI~~erK~fPGYvLv~m~l~D~~W~~v~ 80 (193)
T TIGR00922 1 WYVVQTYSGYEKKVKKNLEELIELLGMTDVIFEVIVPTEEVVEIKKKGKKKTKIVVERKIFPGYVLVKMDLTDESWHLVK 80 (193)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCEEEEEEEEEEEECCCEEEEEEECCHHHHHHHH
T ss_conf 94886024783789999999998538886035788212233888547903201466211548648999973868898887
Q ss_pred C----CCEEEEEECCCCCCCCCCH-----------HHHHHHHHHHHHHH--HHHCCCCCCCCCCEEEEECCCCCCCEEEE
Q ss_conf 0----3303664327886100258-----------89999997653222--10000123478977999518778971999
Q gi|254780148|r 81 D----TPKVIGFLGTGENPSPVTD-----------SEIEHIMNQVEAAV--QRPVSSVFFEVGERVCVSDGPFASFNGIV 143 (177)
Q Consensus 81 ~----t~gV~~~l~~~~~P~~i~~-----------~ei~~l~~~~~~~~--~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v 143 (177)
T Consensus 81 n~i~k~PgV~gFvG~~~~~~~~~~~~~lLP~~~~~~Ev~~il~~~~~~~~~~~p~~~~~fE~Ge~Vrv~dGPF~~F~G~V 160 (193)
T TIGR00922 81 NEIRKTPGVTGFVGSGGKPKALSEDDFLLPRKLSKEEVKNILNKLEEGKADKKPKVKIDFEVGEQVRVNDGPFANFTGTV 160 (193)
T ss_pred HCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEE
T ss_conf 41764884400066788888777676257806328999999999874303454533432357988898038888851479
Q ss_pred EEECCCCCEEEEEEEECCCEEEEEECHHHHEEC
Q ss_conf 998288988999998168704788567871233
Q gi|254780148|r 144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 176 (177)
Q Consensus 144 ~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~ieki 176 (177)
T Consensus 161 eev~~Ek~kLkV~VSIFGR~TPVEL~F~QVEK~ 193 (193)
T TIGR00922 161 EEVDYEKSKLKVSVSIFGRETPVELEFTQVEKI 193 (193)
T ss_pred EEEEHHCCEEEEEEECCCCCCCEEECCCEEECC
T ss_conf 888021376999997168787146051112039