HHsearch alignment for GI: 254780148 and conserved domain: TIGR00922

>TIGR00922 nusG transcription termination/antitermination factor NusG; InterPro: IPR001062 Bacterial transcription antitermination protein, nusG, is a component of the transcription complex and interacts with the termination factor Rho and RNA polymerase , . NusG is a bacterial transcriptional elongation factor involved in transcription termination and anti-termination .; GO: 0003711 transcription elongation regulator activity, 0006355 regulation of transcription DNA-dependent.
Probab=100.00  E-value=0  Score=330.55  Aligned_cols=172  Identities=47%  Similarity=0.861  Sum_probs=167.6

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEE-CCEEE---EEECCEECEEEEEEEECCCCCHHHHH
Q ss_conf             189995288538999999999997798111432663131012772-02035---66412033099999961865224442
Q gi|254780148|r    5 WYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVR-KGRKV---NSERRFFPGYVLIKAVMTDKVYHTIK   80 (177)
Q Consensus         5 Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~-~g~~~---~~~~plfpgYiFv~~~~~~~~~~~i~   80 (177)
T Consensus         1 WYvvq~~SG~E~~Vk~~l~~~~~~~~~~D~i~~v~vP~E~v~Ei~~~Gk~~~KI~~erK~fPGYvLv~m~l~D~~W~~v~   80 (193)
T TIGR00922         1 WYVVQTYSGYEKKVKKNLEELIELLGMTDVIFEVIVPTEEVVEIKKKGKKKTKIVVERKIFPGYVLVKMDLTDESWHLVK   80 (193)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCEEEEEEEEEEEECCCEEEEEEECCHHHHHHHH
T ss_conf             94886024783789999999998538886035788212233888547903201466211548648999973868898887


Q ss_pred             C----CCEEEEEECCCCCCCCCCH-----------HHHHHHHHHHHHHH--HHHCCCCCCCCCCEEEEECCCCCCCEEEE
Q ss_conf             0----3303664327886100258-----------89999997653222--10000123478977999518778971999
Q gi|254780148|r   81 D----TPKVIGFLGTGENPSPVTD-----------SEIEHIMNQVEAAV--QRPVSSVFFEVGERVCVSDGPFASFNGIV  143 (177)
Q Consensus        81 ~----t~gV~~~l~~~~~P~~i~~-----------~ei~~l~~~~~~~~--~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v  143 (177)
T Consensus        81 n~i~k~PgV~gFvG~~~~~~~~~~~~~lLP~~~~~~Ev~~il~~~~~~~~~~~p~~~~~fE~Ge~Vrv~dGPF~~F~G~V  160 (193)
T TIGR00922        81 NEIRKTPGVTGFVGSGGKPKALSEDDFLLPRKLSKEEVKNILNKLEEGKADKKPKVKIDFEVGEQVRVNDGPFANFTGTV  160 (193)
T ss_pred             HCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEE
T ss_conf             41764884400066788888777676257806328999999999874303454533432357988898038888851479


Q ss_pred             EEECCCCCEEEEEEEECCCEEEEEECHHHHEEC
Q ss_conf             998288988999998168704788567871233
Q gi|254780148|r  144 KNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI  176 (177)
Q Consensus       144 ~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~ieki  176 (177)
T Consensus       161 eev~~Ek~kLkV~VSIFGR~TPVEL~F~QVEK~  193 (193)
T TIGR00922       161 EEVDYEKSKLKVSVSIFGRETPVELEFTQVEKI  193 (193)
T ss_pred             EEEEHHCCEEEEEEECCCCCCCEEECCCEEECC
T ss_conf             888021376999997168787146051112039