HHsearch alignment for GI: 254780148 and conserved domain: smart00738
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=99.96 E-value=7e-29 Score=192.93 Aligned_cols=105 Identities=39% Similarity=0.779 Sum_probs=102.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCCC
Q ss_conf 61899952885389999999999977981114326631310127720203566412033099999961865224442033
Q gi|254780148|r 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTP 83 (177)
Q Consensus 4 ~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t~ 83 (177)
T Consensus 1 nWYvv~t~~g~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~r~gk~~~~~~~lFPGYiFv~~~~~~~~~~~i~~t~ 80 (106)
T smart00738 1 NWYAVRTTSGQEKRVAENLERKAEALGLEDKIVSILVPTEEVKEIRRGKKKVVERPLFPGYIFVEADLEDEVWTAIRGTP 80 (106)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCEEEEEEEECCCEEEEEEECCCCCEEEEECCC
T ss_conf 98999998980999999999987665675241799897199999847826999886218589999883877031021699
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 0366432788610025889999997
Q gi|254780148|r 84 KVIGFLGTGENPSPVTDSEIEHIMN 108 (177)
Q Consensus 84 gV~~~l~~~~~P~~i~~~ei~~l~~ 108 (177)
T Consensus 81 gV~~fv~~~~~P~~v~~~ei~~il~ 105 (106)
T smart00738 81 GVRGFVGGGGKPTPVPDDEIEKILK 105 (106)
T ss_pred CCEEECCCCCEEEECCHHHHHHHHC
T ss_conf 9629738999853679999999738