HHsearch alignment for GI: 254780148 and conserved domain: smart00738

>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=99.96  E-value=7e-29  Score=192.93  Aligned_cols=105  Identities=39%  Similarity=0.779  Sum_probs=102.1

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCCC
Q ss_conf             61899952885389999999999977981114326631310127720203566412033099999961865224442033
Q gi|254780148|r    4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDTP   83 (177)
Q Consensus         4 ~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t~   83 (177)
T Consensus         1 nWYvv~t~~g~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~r~gk~~~~~~~lFPGYiFv~~~~~~~~~~~i~~t~   80 (106)
T smart00738        1 NWYAVRTTSGQEKRVAENLERKAEALGLEDKIVSILVPTEEVKEIRRGKKKVVERPLFPGYIFVEADLEDEVWTAIRGTP   80 (106)
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCEEEEEEEECCCEEEEEEECCCCCEEEEECCC
T ss_conf             98999998980999999999987665675241799897199999847826999886218589999883877031021699


Q ss_pred             EEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             0366432788610025889999997
Q gi|254780148|r   84 KVIGFLGTGENPSPVTDSEIEHIMN  108 (177)
Q Consensus        84 gV~~~l~~~~~P~~i~~~ei~~l~~  108 (177)
T Consensus        81 gV~~fv~~~~~P~~v~~~ei~~il~  105 (106)
T smart00738       81 GVRGFVGGGGKPTPVPDDEIEKILK  105 (106)
T ss_pred             CCEEECCCCCEEEECCHHHHHHHHC
T ss_conf             9629738999853679999999738