HHsearch alignment for GI: 254780148 and conserved domain: smart00739
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=96.56 E-value=0.0021 Score=40.36 Aligned_cols=27 Identities=48% Similarity=0.642 Sum_probs=24.6
Q ss_pred CCCCCCEEEEECCCCCCCEEEEEEECC
Q ss_conf 347897799951877897199999828
Q gi|254780148|r 122 FFEVGERVCVSDGPFASFNGIVKNVDE 148 (177)
Q Consensus 122 ~~~~G~~V~I~~Gpf~g~~g~v~~i~~ 148 (177)
T Consensus 1 ~~~~G~~V~V~~G~~~g~~g~V~~i~~ 27 (28)
T smart00739 1 KFEVGDTVRVIAGPFKGKVGKVLEVDG 27 (28)
T ss_pred CCCCCCEEEEEECCCCCCCCEEEEECC
T ss_conf 940276889972255774113898238